Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 151 of 190
Found at i:24364780 original size:58 final size:58
Alignment explanation
Indices: 24364712--24365222 Score: 742
Period size: 59 Copynumber: 8.7 Consensus size: 58
24364702 CTTTAAATCA
24364712 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
* * *
24364770 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
** *
24364828 AAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAACAAATTTCC
1 AAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
*
24364887 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCAAAATTTCC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTCC
* *
24364947 AAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCA
1 -AAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTCC
*
24365007 AAAAAAAGAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
1 AAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
* *
24365066 -AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
* * * *
24365123 AAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATCAAAACTTCC
1 AAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT--AAATTTCC
*
24365184 -AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
24365223 TCCTACACAA
Statistics
Matches: 409, Mismatches: 30, Indels: 27
0.88 0.06 0.06
Matches are distributed among these distances:
57 49 0.12
58 111 0.27
59 136 0.33
60 60 0.15
61 53 0.13
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.34
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
Found at i:24364832 original size:117 final size:119
Alignment explanation
Indices: 24364709--24365222 Score: 756
Period size: 117 Copynumber: 4.4 Consensus size: 119
24364699 ATTCTTTAAA
24364709 TCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAA
1 TCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAA
*
24364774 AAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTT
66 AAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAATTT
*** *
24364826 TCAAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAACAAATTTCCAAAA
1 TCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAA
* *
24364891 AAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTT
66 AAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATC-AAATTT
* * *
24364945 CCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
1 TCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTCCAA
* *
24365009 AAAAAGAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAA-TT
64 AAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAATTT
* * *
24365063 TC-CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAA
1 TCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAA
* * **
24365127 AAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATCAAAACT
66 AAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAATTT
* *
24365181 TC-CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 TCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
24365223 TCCTACACAA
Statistics
Matches: 363, Mismatches: 26, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
116 51 0.14
117 158 0.44
118 47 0.13
119 57 0.16
120 11 0.03
121 39 0.11
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (119 bp):
TCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAA
AAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAATTT
Found at i:24366323 original size:8 final size:8
Alignment explanation
Indices: 24366310--24366371 Score: 74
Period size: 8 Copynumber: 7.9 Consensus size: 8
24366300 TTTGAATCTC
*
24366310 TTTTTTCA
1 TTTTTTCT
24366318 TTTTTTC-
1 TTTTTTCT
*
24366325 TTCTTTCT
1 TTTTTTCT
*
24366333 TTCTTTTTT
1 TT-TTTTCT
24366342 TTTTTTCT
1 TTTTTTCT
24366350 TTTTTTCT
1 TTTTTTCT
24366358 TTTTTT-T
1 TTTTTTCT
24366365 TTTTTTC
1 TTTTTTC
24366372 ATCTATTGTT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
7 13 0.28
8 28 0.60
9 6 0.13
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTTCT
Found at i:24366339 original size:25 final size:23
Alignment explanation
Indices: 24366308--24366371 Score: 78
Period size: 23 Copynumber: 2.7 Consensus size: 23
24366298 AATTTGAATC
24366308 TCTTTTTTCATTTTTTCTTCTTTCTT
1 TCTTTTTT--TTTTTT-TTCTTTCTT
*
24366334 TC--TTTTTTTTTTTTCTTTTTT
1 TCTTTTTTTTTTTTTTCTTTCTT
24366355 TCTTTTTTTTTTTTTTC
1 TCTTTTTTTTTTTTTTC
24366372 ATCTATTGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
21 10 0.29
22 6 0.17
23 13 0.37
24 4 0.11
26 2 0.06
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (23 bp):
TCTTTTTTTTTTTTTTCTTTCTT
Found at i:24366340 original size:1 final size:1
Alignment explanation
Indices: 24366336--24366370 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
24366326 TCTTTCTTTC
* *
24366336 TTTTTTTTTTTTCTTTTTTTCTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
24366371 CATCTATTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:24366352 original size:7 final size:7
Alignment explanation
Indices: 24366308--24366368 Score: 60
Period size: 7 Copynumber: 9.1 Consensus size: 7
24366298 AATTTGAATC
24366308 TCTTTTT
1 TCTTTTT
24366315 TCATTTTT
1 TC-TTTTT
*
24366323 TCTTCTT
1 TCTTTTT
24366330 TC---TT
1 TCTTTTT
24366334 TCTTTTT
1 TCTTTTT
24366341 T-TTTTT
1 TCTTTTT
24366347 TCTTTTTT
1 TC-TTTTT
24366355 TCTTTTT
1 TCTTTTT
24366362 T-TTTTT
1 TCTTTTT
24366368 T
1 T
24366369 TTCATCTATT
Statistics
Matches: 47, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
4 4 0.09
6 12 0.26
7 17 0.36
8 14 0.30
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (7 bp):
TCTTTTT
Found at i:24366366 original size:21 final size:21
Alignment explanation
Indices: 24366318--24366368 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
24366308 TCTTTTTTCA
*
24366318 TTTTTTCTTCTTTCTTTCTTT
1 TTTTTTTTTCTTTCTTTCTTT
*
24366339 TTTTTTTTTCTTTTTTTCTTT
1 TTTTTTTTTCTTTCTTTCTTT
24366360 TTTTTTTTT
1 TTTTTTTTT
24366369 TTCATCTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (21 bp):
TTTTTTTTTCTTTCTTTCTTT
Found at i:24370201 original size:12 final size:12
Alignment explanation
Indices: 24370184--24370218 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
24370174 GTTTAAAGAC
*
24370184 AAATCAAAATCA
1 AAATCAAAATAA
24370196 AAATCAAAATAA
1 AAATCAAAATAA
*
24370208 AAATCAGAATA
1 AAATCAAAATA
24370219 GAAAGGAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.69, C:0.11, G:0.03, T:0.17
Consensus pattern (12 bp):
AAATCAAAATAA
Found at i:24370209 original size:5 final size:6
Alignment explanation
Indices: 24370184--24370213 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
24370174 GTTTAAAGAC
*
24370184 AAATCA AAATCA AAATCA AAATAA AAATCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA
24370214 GAATAGAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATCA
Found at i:24370577 original size:58 final size:58
Alignment explanation
Indices: 24370254--24370704 Score: 596
Period size: 59 Copynumber: 7.7 Consensus size: 58
24370244 TTGTGTAGGA
24370254 AAAATTGATACTTTCAACTTTT-CTCCAAAAATATTTTTTTTTGAAAATTTATTT-TAAGG
1 AAAATTGATACTTTCAACTTTTCCT-CAAAAATA--TTTTTTTGAAAATTTATTTCTAAGG
* *
24370313 AAAATTGATACTTTCAACTTTTCC-CTAAAAATA-TTTTTTGGAAATTTA-TTCTTAAAG
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGAAAATTTATTTC-TAAGG
*
24370370 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTTCAAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATA---TTTTTTTGAAAATTTATTTCTAAGG
* *
24370431 AAAATTGATACTTTCAACTTTTCC-CTAAAAATA-CTTTTCGAAAATTTTGATTT-TCAAGG
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGAAAA-TTT-ATTTCT-AAGG
* *
24370490 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTCTAAGG
* ** *
24370548 AAAATTAATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTTTTTGAAAATTTATTTCTAAGG
*
24370607 AAAATTGATACTTTCAACTTTT-CTCCAAAAATATTTTTTTGGAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCT-CAAAAATATTTTTTTGAAAATTTATTTCTAAGG
*
24370665 AAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
24370705 TCATTTAAAG
Statistics
Matches: 349, Mismatches: 23, Indels: 41
0.85 0.06 0.10
Matches are distributed among these distances:
55 2 0.01
56 14 0.04
57 43 0.12
58 105 0.30
59 123 0.35
60 11 0.03
61 48 0.14
62 3 0.01
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTCTAAGG
Found at i:24370705 original size:117 final size:116
Alignment explanation
Indices: 24370254--24370703 Score: 651
Period size: 117 Copynumber: 3.8 Consensus size: 116
24370244 TTGTGTAGGA
24370254 AAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTTTTGAAAATTTATTT-TAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCTCCAAAAATA-TTTTTTTTGAAAATTTATTTCTAAGGAAAAT
* * *
24370318 TGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTCTTAAAG
65 TGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTTAAGG
*
24370370 AAAATTGATACTTTCAACTTTTC-CTCAAAAATATTTTTTTTTTCAAAATTTATTTCTAAGGAAA
1 AAAATTGATACTTTCAACTTTTCTC-CAAAAATA--TTTTTTTTGAAAATTTATTTCTAAGGAAA
* * *
24370434 ATTGATACTTTCAACTTTTCCCTAAAAATACTTTTCGAAAATTTTGATTTTCAAGG
63 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAA-TTT-ATTTTTAAGG
* *
24370490 AAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAAATTTATTTCTAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTTTGAAAATTTATTTCTAAGGAAAATT
* *
24370554 AATACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTGAAAATTTATTTTTAAGG
66 GATACTTTCAACTTTTCCCT-AAAAAT--ATTTTTTGAAAATTTATTTTTAAGG
*
24370607 AAAATTGATACTTTCAACTTTTCTCCAAAAATA-TTTTTTTGGAAATTTATTTCTAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTTTGAAAATTTATTTCTAAGGAAAATT
*
24370671 GATACTTTCAACTTTT-CTTCAAAAATATTTTTT
66 GATACTTTCAACTTTTCCCT-AAAAATATTTTTT
24370704 TTCATTTAAA
Statistics
Matches: 307, Mismatches: 18, Indels: 19
0.89 0.05 0.06
Matches are distributed among these distances:
115 7 0.02
116 34 0.11
117 166 0.54
118 49 0.16
119 12 0.04
120 38 0.12
121 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (116 bp):
AAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTTTGAAAATTTATTTCTAAGGAAAATT
GATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTTAAGG
Found at i:24370760 original size:21 final size:20
Alignment explanation
Indices: 24370718--24370787 Score: 58
Period size: 21 Copynumber: 3.6 Consensus size: 20
24370708 TTTAAAGAAT
*
24370718 ACAAAACAAAATAAAAGTAAA
1 ACAAAATAAAA-AAAAGTAAA
** *
24370739 AGTAAAT--AAAGAAG-AAA
1 ACAAAATAAAAAAAAGTAAA
24370756 A-AAAATAAAAAAAAGTAAA
1 ACAAAATAAAAAAAAGTAAA
24370775 ACAAAAATAAAAA
1 AC-AAAATAAAAA
24370788 TAAGATAAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
16 4 0.11
17 4 0.11
18 10 0.26
19 6 0.16
21 14 0.37
ACGTcount: A:0.79, C:0.04, G:0.07, T:0.10
Consensus pattern (20 bp):
ACAAAATAAAAAAAAGTAAA
Found at i:24370853 original size:25 final size:26
Alignment explanation
Indices: 24370825--24370873 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
24370815 AATCTAATCT
*
24370825 AATAAATAAAAAAAT-AAAAAAAACA
1 AATAAACAAAAAAATGAAAAAAAACA
*
24370850 AATAAACAAATAAATGAAAAAAAA
1 AATAAACAAAAAAATGAAAAAAAA
24370874 AAACCTGGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.82, C:0.04, G:0.02, T:0.12
Consensus pattern (26 bp):
AATAAACAAAAAAATGAAAAAAAACA
Found at i:24370973 original size:10 final size:10
Alignment explanation
Indices: 24370958--24370983 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
24370948 GGCTTAGGAA
24370958 GCTCGGCTTG
1 GCTCGGCTTG
24370968 GCTCGGCTTG
1 GCTCGGCTTG
24370978 GCTCGG
1 GCTCGG
24370984 AGGGGGGCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.31, G:0.42, T:0.27
Consensus pattern (10 bp):
GCTCGGCTTG
Found at i:24371868 original size:23 final size:22
Alignment explanation
Indices: 24371828--24371876 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
24371818 TATAATATTA
* *
24371828 ATATAATAATAAATATATAACT
1 ATATAATAATAAACATATAAAT
*
24371850 ATATAAATAATATACATATAAAT
1 ATAT-AATAATAAACATATAAAT
24371873 ATAT
1 ATAT
24371877 TCTAAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (22 bp):
ATATAATAATAAACATATAAAT
Found at i:24371885 original size:15 final size:15
Alignment explanation
Indices: 24371835--24371885 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
24371825 TTAATATAAT
24371835 AATAAATATATAACTA
1 AATAAATATAT-ACTA
*
24371851 TATAAATAATATAC-A
1 AATAAAT-ATATACTA
* *
24371866 TATAAATATATTCTA
1 AATAAATATATACTA
24371881 AATAA
1 AATAA
24371886 TAAAAATAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 5 0.17
15 13 0.43
16 8 0.27
17 4 0.13
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAAATATATACTA
Found at i:24372886 original size:58 final size:58
Alignment explanation
Indices: 24372461--24372914 Score: 590
Period size: 59 Copynumber: 7.7 Consensus size: 58
24372451 TCTTGTGTAG
*
24372461 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGAAAATTTTGATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAA-TTT-ATTTCTAA
* * *
24372520 AGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTTGAAAATTTATTTCTAA
* *
24372579 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATA-TTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTCTAA
* * ** * *
24372636 GGAGAATTGATACTTTCAACTTTTTCTTAAAAATCCTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTTGAAAATTTATTTCTAA
* * * *
24372695 GAAAAATTGATACTTTCAACTATTCCCTAAAAATATTTTTTTTGGAAATTTTGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTT-GAAAATTT-ATTTCT-AA
* * ** *
24372756 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTTGAAAATTTATTTCTAA
*
24372815 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTCTAA
* *
24372873 GGAAAATTAATACTTTCAACTTTTCCTCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
24372915 TGATTTAAAG
Statistics
Matches: 347, Mismatches: 38, Indels: 21
0.85 0.09 0.05
Matches are distributed among these distances:
57 50 0.14
58 60 0.17
59 164 0.47
60 19 0.05
61 54 0.16
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTCTAA
Found at i:24372914 original size:236 final size:234
Alignment explanation
Indices: 24372463--24372914 Score: 737
Period size: 236 Copynumber: 1.9 Consensus size: 234
24372453 TTGTGTAGGG
* *
24372463 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTTGATTTTTAAAGAAAATT
1 AAAATTGATACTTTCAACTATTCCCCAAAAATATTTTTTGAAAATTTTGATTTTCAAAGAAAATT
**
24372528 GATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTATTTCTAAGGAAAATTGATACT
66 GATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTGAAAATTTATTTCTAAGGAAAATTGATACT
* * *
24372593 TTCAACTTTTCTCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAGAATTGATACTTTCAACTT
131 TTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTAATACTTTCAACTT
* * *
24372658 TTTCTTAAAAATCCTTTTTTTGAAAATTTATTTTTAAGA
196 TTCCTCAAAAATCATTTTTTTGAAAATTTATTTTTAAGA
* *
24372697 AAAATTGATACTTTCAACTATTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTC-AAGAAAA
1 AAAATTGATACTTTCAACTATTCCCCAAAAATA--TTTTTTGAAAATTTTGATTTTCAAAG-AAA
*
24372761 ATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
63 ATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTGAAAATTTATTTCTAAGGAAAATTGAT
24372826 ACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTCTAAGGAAAATTAATACTTTCA
128 ACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTATTTCTAAGGAAAATTAATACTTTCA
24372891 ACTTTTCCTCAAAAAT-ATTTTTTT
192 ACTTTTCCTCAAAAATCATTTTTTT
24372915 TGATTTAAAG
Statistics
Matches: 201, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
234 31 0.15
235 3 0.01
236 115 0.57
237 52 0.26
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (234 bp):
AAAATTGATACTTTCAACTATTCCCCAAAAATATTTTTTGAAAATTTTGATTTTCAAAGAAAATT
GATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTGAAAATTTATTTCTAAGGAAAATTGATACT
TTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTAATACTTTCAACTT
TTCCTCAAAAATCATTTTTTTGAAAATTTATTTTTAAGA
Found at i:24372980 original size:21 final size:21
Alignment explanation
Indices: 24372963--24373017 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 21
24372953 AATAAAGAAG
24372963 AAAAAAAATAAAGAAAAGTAA
1 AAAAAAAATAAAGAAAAGTAA
*
24372984 AACAAAAATAAA-AATAAGATAA
1 AAAAAAAATAAAGAA-AAG-TAA
24373006 AGATAAAAAATA
1 A-A-AAAAAATA
24373018 TTAAATAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
20 2 0.07
21 14 0.50
22 4 0.14
23 1 0.04
24 7 0.25
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (21 bp):
AAAAAAAATAAAGAAAAGTAA
Found at i:24373063 original size:25 final size:26
Alignment explanation
Indices: 24373035--24373090 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 26
24373025 AATCTAATCT
* *
24373035 AATAAATAAAAAAAT-AGAAAAAACA
1 AATAAACAAAAAAATGACAAAAAACA
*
24373060 AATAAACAAATAAATGACAAAAAA-A
1 AATAAACAAAAAAATGACAAAAAACA
24373085 AA-AAAC
1 AATAAAC
24373091 CTGGAGCAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 4 0.15
25 16 0.59
26 7 0.26
ACGTcount: A:0.79, C:0.07, G:0.04, T:0.11
Consensus pattern (26 bp):
AATAAACAAAAAAATGACAAAAAACA
Found at i:24373451 original size:20 final size:20
Alignment explanation
Indices: 24373426--24373465 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
24373416 TCCATCAGAT
24373426 TCTGG-AAATTATCACCGGAA
1 TCTGGAAAATT-TCACCGGAA
24373446 TCTGGAAAATTTCACCGGAA
1 TCTGGAAAATTTCACCGGAA
24373466 GTTCGCCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (20 bp):
TCTGGAAAATTTCACCGGAA
Found at i:24374074 original size:59 final size:57
Alignment explanation
Indices: 24373982--24374316 Score: 451
Period size: 59 Copynumber: 5.7 Consensus size: 57
24373972 TCTTGTGTAG
*
24373982 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAT-ATTTTTTGAAAATTTCGATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATCATTTTTTGAAAATTT--ATTTCTAA
*
24374041 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATCCTTTTATTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTC-CCAAAAATCATTTT-TTGAAAATTTATTTCTAA
* *
24374100 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTGTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAT-CATTTTTTGAAAATTTATTTCTAA
* * *
24374159 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTGAGAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAT-CATTTTTTGAAAATTTATTTCTAA
*
24374218 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATCA-TTTTTTGAAAATTTATTTCTAA
* *
24374276 GGAAAATTGATTCTTTCAACTTTTCTTCAAAAAT-ATTTTTT
1 GGAAAATTGATACTTTCAACTTTTC-CCAAAAATCATTTTTT
24374317 TTGATTTAAA
Statistics
Matches: 255, Mismatches: 13, Indels: 18
0.89 0.05 0.06
Matches are distributed among these distances:
57 7 0.03
58 51 0.20
59 174 0.68
60 13 0.05
61 10 0.04
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATCATTTTTTGAAAATTTATTTCTAA
Found at i:24374318 original size:118 final size:117
Alignment explanation
Indices: 24373982--24374320 Score: 509
Period size: 118 Copynumber: 2.9 Consensus size: 117
24373972 TCTTGTGTAG
* *
24373982 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGAAAATTTCGATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTT--ATTTCTAAGGAAA
* *
24374046 ATTGATACTTTCAACTTTTCTCCAAAAATCCTTTTATTGAAAATTTATTTCTAA
64 ATTGATACTTTCAACTTTTCTTCAAAAATCCTTTTTTTGAAAATTTATTTCTAA
* * *
24374100 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTGTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTTGAAAATTTATTTCTAAGGAAAA
* * * *
24374165 TTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTGAGAATTTATTTTTAA
65 TTGATACTTTCAACTTTTCTTCAAAAATCCTTTTTTTGAAAATTTATTTCTAA
*
24374218 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTCTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTCTAAGGAAAAT
* **
24374283 TGATTCTTTCAACTTTTCTTCAAAAATATTTTTTTTGA
66 TGATACTTTCAACTTTTCTTCAAAAATCCTTTTTTTGA
24374321 TTTAAAGAAT
Statistics
Matches: 200, Mismatches: 19, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
117 61 0.31
118 125 0.62
120 14 0.07
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTCTAAGGAAAAT
TGATACTTTCAACTTTTCTTCAAAAATCCTTTTTTTGAAAATTTATTTCTAA
Found at i:24374387 original size:31 final size:35
Alignment explanation
Indices: 24374323--24374388 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 35
24374313 TTTTTTGATT
*
24374323 TAAAGAATACAAAACAAAATAAAAGTAAAAGTAAA
1 TAAAGAAGACAAAACAAAATAAAAGTAAAAGTAAA
24374358 TAAAGAAGA-AAAA-AAAAT-AAAG-AAAAGTAAA
1 TAAAGAAGACAAAACAAAATAAAAGTAAAAGTAAA
24374389 ACAAAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 9 0.30
32 4 0.13
33 5 0.17
34 4 0.13
35 8 0.27
ACGTcount: A:0.74, C:0.03, G:0.11, T:0.12
Consensus pattern (35 bp):
TAAAGAAGACAAAACAAAATAAAAGTAAAAGTAAA
Found at i:24374426 original size:27 final size:27
Alignment explanation
Indices: 24374333--24374417 Score: 72
Period size: 27 Copynumber: 3.1 Consensus size: 27
24374323 TAAAGAATAC
* *
24374333 AAAAC-AAAATAAAAGTAAAAGTAAA-T
1 AAAACAAAAATAAAAAT-AAAGAAAAGT
24374359 AAAGA-AGAAAA-AAAAATAAAGAAAAGT
1 AAA-ACA-AAAATAAAAATAAAGAAAAGT
24374386 AAAACAAAAATAAAAAT-AAGATAAAGAT
1 AAAACAAAAATAAAAATAAAGA-AAAG-T
24374414 AAAA
1 AAAA
24374418 AATATTAAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
26 19 0.39
27 21 0.43
28 9 0.18
ACGTcount: A:0.76, C:0.02, G:0.09, T:0.12
Consensus pattern (27 bp):
AAAACAAAAATAAAAATAAAGAAAAGT
Found at i:24374465 original size:21 final size:21
Alignment explanation
Indices: 24374439--24374482 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
24374429 AATCTAATCT
*
24374439 AATAAATAAAAAAATAGAAAA
1 AATAAATAAAAAAATAAAAAA
*
24374460 AATAAATAAACAAATAAAAAA
1 AATAAATAAAAAAATAAAAAA
24374481 AA
1 AA
24374483 AACCTGGAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.14
Consensus pattern (21 bp):
AATAAATAAAAAAATAAAAAA
Found at i:24375041 original size:26 final size:24
Alignment explanation
Indices: 24375002--24375051 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
24374992 AATCTGGAAA
*
24375002 TTTCCCAGAAATTTCCAGAAAAATT
1 TTTCCCAAAAATTTCCA-AAAAATT
*
24375027 TTTCGCCAAAAATTTCTAAAAAATT
1 TTTC-CCAAAAATTTCCAAAAAATT
24375052 ATTTTCGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.42, C:0.18, G:0.06, T:0.34
Consensus pattern (24 bp):
TTTCCCAAAAATTTCCAAAAAATT
Found at i:24375520 original size:25 final size:25
Alignment explanation
Indices: 24375492--24375542 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
24375482 AGAAAAGAAA
*
24375492 ATAATTATA-ATATAATAATAAATAT
1 ATAATTATATAAAT-ATAATAAATAT
*
24375517 ATAATTATATAAATATAATACATAT
1 ATAATTATATAAATATAATAAATAT
24375542 A
1 A
24375543 AATATTAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 20 0.87
26 3 0.13
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (25 bp):
ATAATTATATAAATATAATAAATAT
Found at i:24375530 original size:16 final size:14
Alignment explanation
Indices: 24375501--24375547 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 14
24375491 AATAATTATA
24375501 ATATAATAATAAAT
1 ATATAATAATAAAT
24375515 ATATAATTATATAAAT
1 ATATAA-TA-ATAAAT
24375531 ATAATACAT-ATAAAT
1 AT-ATA-ATAATAAAT
24375546 AT
1 AT
24375548 TAACAGAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.21
15 10 0.34
16 8 0.28
17 4 0.14
18 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (14 bp):
ATATAATAATAAAT
Found at i:24375532 original size:14 final size:14
Alignment explanation
Indices: 24375491--24375547 Score: 64
Period size: 14 Copynumber: 4.0 Consensus size: 14
24375481 AAGAAAAGAA
24375491 AATAAT-TATAATAT
1 AATAATATA-AATAT
24375505 AATAATA-AATATAT
1 AATAATATAA-ATAT
*
24375519 AATTATATAAATAT
1 AATAATATAAATAT
24375533 AATACATATAAATAT
1 AATA-ATATAAATAT
24375548 TAACAGAGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
13 1 0.03
14 24 0.65
15 12 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (14 bp):
AATAATATAAATAT
Found at i:24375847 original size:9 final size:9
Alignment explanation
Indices: 24375833--24375915 Score: 82
Period size: 9 Copynumber: 9.3 Consensus size: 9
24375823 AACATTGTCA
24375833 TTTTTTG-T
1 TTTTTTGTT
24375841 TTTTTT-TT
1 TTTTTTGTT
**
24375849 TTTTTTGGA
1 TTTTTTGTT
**
24375858 AATTTTGTT
1 TTTTTTGTT
24375867 TTGTTTTGTTT
1 TT-TTTTG-TT
*
24375878 TTTTTTATT
1 TTTTTTGTT
24375887 TTTTTTGTT
1 TTTTTTGTT
24375896 TTTTTTGTT
1 TTTTTTGTT
24375905 TTTTTT-TT
1 TTTTTTGTT
24375913 TTT
1 TTT
24375916 GACCAAAGCT
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
8 18 0.30
9 30 0.49
10 9 0.15
11 4 0.07
ACGTcount: A:0.05, C:0.00, G:0.10, T:0.86
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:24375868 original size:5 final size:5
Alignment explanation
Indices: 24375860--24375916 Score: 66
Period size: 5 Copynumber: 12.0 Consensus size: 5
24375850 TTTTTGGAAA
* *
24375860 TTTTG TTTTG TTTTG TTTTT TTTTA TTTT- TTTTG TTTT- TTTTG TTTT-
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG
*
24375907 TTTTT TTTTG
1 TTTTG TTTTG
24375917 ACCAAAGCTC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
4 12 0.26
5 34 0.74
ACGTcount: A:0.02, C:0.00, G:0.11, T:0.88
Consensus pattern (5 bp):
TTTTG
Found at i:24375881 original size:1 final size:1
Alignment explanation
Indices: 24375860--24375915 Score: 58
Period size: 1 Copynumber: 56.0 Consensus size: 1
24375850 TTTTTGGAAA
* * * * * *
24375860 TTTTGTTTTGTTTTGTTTTTTTTTATTTTTTTTGTTTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
24375916 GACCAAAGCT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.02, C:0.00, G:0.09, T:0.89
Consensus pattern (1 bp):
T
Found at i:24376078 original size:41 final size:42
Alignment explanation
Indices: 24375923--24376208 Score: 394
Period size: 41 Copynumber: 7.0 Consensus size: 42
24375913 TTTGACCAAA
* *
24375923 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAATA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-AGTAAATT
24375966 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
24376006 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
24376048 GCTCCTCTAAACAGAGGCACCACGAC-TTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
24376088 GCTCCTCTAAACAGAGGCATCACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* **
24376129 GCTCCTCTAAACAGAGGCAACATAACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* * *
24376170 ACTCCTTTAAACAGAGGCA--ACGAAC-TTGGAAAGGTAAAT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAGTAAAT
24376209 ACTCCTAGAC
Statistics
Matches: 227, Mismatches: 11, Indels: 13
0.90 0.04 0.05
Matches are distributed among these distances:
39 5 0.02
40 81 0.36
41 82 0.36
42 32 0.14
43 27 0.12
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Found at i:24376207 original size:40 final size:40
Alignment explanation
Indices: 24375923--24376208 Score: 382
Period size: 40 Copynumber: 7.0 Consensus size: 40
24375913 TTTGACCAAA
* *
24375923 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAATATAAATT
1 GCTCCTCTAAACAGAGGCAC-ACGACTTTG-GAAA-GTAAATT
*
24375966 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAATAAATT
1 GCTCCTCTAAACAGAGGCA-CACGACTTTGGAAAGTAAATT
24376006 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCA-CACGACTTTGG-AAAGTAAATT
24376048 GCTCCTCTAAACAGAGGCACCACGAC-TTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCA-CACGACTTTGGAAAGTAAATT
24376088 GCTCCTCTAAACAGAGGCATCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCA-CACGACTTTGGAAAGTAAATT
**
24376129 GCTCCTCTAAACAGAGGCAACATAACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGC-ACACGACTTTGGAAAGTAAATT
* *
24376170 ACTCCTTTAAACAGAGGCA-ACGAAC-TTGGAAAGGTAAAT
1 GCTCCTCTAAACAGAGGCACACG-ACTTTGGAAA-GTAAAT
24376209 ACTCCTAGAC
Statistics
Matches: 227, Mismatches: 9, Indels: 17
0.90 0.04 0.07
Matches are distributed among these distances:
39 8 0.04
40 80 0.35
41 76 0.33
42 36 0.16
43 26 0.11
44 1 0.00
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (40 bp):
GCTCCTCTAAACAGAGGCACACGACTTTGGAAAGTAAATT
Found at i:24377494 original size:14 final size:16
Alignment explanation
Indices: 24377475--24377511 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
24377465 TTTTTTCTTT
24377475 TTTTTTC-CTTTT-TC
1 TTTTTTCTCTTTTCTC
24377489 TTTTTTCTCTTTTCTC
1 TTTTTTCTCTTTTCTC
*
24377505 ATTTTTC
1 TTTTTTC
24377512 ATCCATTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 5 0.25
16 8 0.40
ACGTcount: A:0.03, C:0.22, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTCTCTTTTCTC
Found at i:24377837 original size:17 final size:17
Alignment explanation
Indices: 24377815--24377848 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
24377805 GTCATGTGTG
*
24377815 GCTTTTATTTTTCTTTT
1 GCTTTTATTTCTCTTTT
*
24377832 GCTTTTCTTTCTCTTTT
1 GCTTTTATTTCTCTTTT
24377849 CATTTTTGAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.18, G:0.06, T:0.74
Consensus pattern (17 bp):
GCTTTTATTTCTCTTTT
Found at i:24381665 original size:54 final size:53
Alignment explanation
Indices: 24381352--24381658 Score: 515
Period size: 53 Copynumber: 5.6 Consensus size: 53
24381342 TCTTGTGTAG
24381352 GGAAAATTGATACTTTCAACTTTTCCCAAAAATTTTTTTGAAATTTATTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATTTTTTTGAAATTTATTTTAA
24381405 GGAAAATTGATACTTTCAACTTTTCCCAAAAATTTTTTTGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATTTTTTTGAAATTTATTT-TAA
24381459 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCC--AAAA-A-TTTTTTTGAAATTTATTTT-AA
24381517 GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAA-ATTTTTTTGAAATTTA-TTTTAA
*
24381573 GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTGAAATTTATTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATTTTTTTGAAATTTATTTTAA
*
24381626 GGAAAATTGATACTTTCAACTTTTCCTAAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAT
24381659 AATTTTTTAT
Statistics
Matches: 245, Mismatches: 2, Indels: 14
0.94 0.01 0.05
Matches are distributed among these distances:
53 88 0.36
54 45 0.18
55 4 0.02
56 48 0.20
57 13 0.05
58 47 0.19
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.44
Consensus pattern (53 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATTTTTTTGAAATTTATTTTAA
Found at i:24381691 original size:9 final size:9
Alignment explanation
Indices: 24381677--24381834 Score: 116
Period size: 9 Copynumber: 17.8 Consensus size: 9
24381667 ATTTAAAGAT
24381677 ATAAAAAAA
1 ATAAAAAAA
*
24381686 ATAAAATAA
1 ATAAAAAAA
24381695 AT--AAAAA
1 ATAAAAAAA
24381702 A-AAAAAAA
1 ATAAAAAAA
24381710 ATAAAAAAA
1 ATAAAAAAA
*
24381719 ATAAAACAA
1 ATAAAAAAA
*
24381728 A-AATAAAA
1 ATAAAAAAA
*
24381736 ATAAATAAAG
1 ATAAA-AAAA
24381746 ATAAAAAATA
1 ATAAAAAA-A
*
24381756 TTAAATAAACTA
1 ATAAA-AAA--A
** *
24381768 ATCTAATAA
1 ATAAAAAAA
24381777 AT-AAAAAA
1 ATAAAAAAA
24381785 ATAAAAACAA
1 ATAAAAA-AA
24381795 AT-AAAAAA
1 ATAAAAAAA
*
24381803 ATAAATAAA
1 ATAAAAAAA
24381812 AT-AAAAAA
1 ATAAAAAAA
*
24381820 TTAAAAAAA
1 ATAAAAAAA
24381829 A-AAAAA
1 ATAAAAA
24381835 CTAGAACGGC
Statistics
Matches: 118, Mismatches: 19, Indels: 25
0.73 0.12 0.15
Matches are distributed among these distances:
7 5 0.04
8 33 0.28
9 55 0.47
10 16 0.14
11 5 0.04
12 4 0.03
ACGTcount: A:0.80, C:0.03, G:0.01, T:0.16
Consensus pattern (9 bp):
ATAAAAAAA
Found at i:24381693 original size:5 final size:5
Alignment explanation
Indices: 24381677--24381817 Score: 81
Period size: 5 Copynumber: 29.2 Consensus size: 5
24381667 ATTTAAAGAT
* *
24381677 ATAAA A-AAA ATAAA AT-AA ATAAA AAAAA AAAAA ATAAA A-AAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
* * * *
24381724 ACAAAA ATAAA A-ATAA ATAAA GATAAA A-AAT ATTAA ATAAA CTAATCTA
1 A-TAAA ATAAA ATA-AA ATAAA -ATAAA ATAAA ATAAA ATAAA ATAA---A
24381773 AT-AA AT-AA A-AAA ATAAA A-ACAA AT-AA A-AAA AT-AA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATA-AA ATAAA ATAAA ATAAA ATAAA ATAAA
24381817 A
1 A
24381818 AATTAAAAAA
Statistics
Matches: 108, Mismatches: 10, Indels: 36
0.70 0.06 0.23
Matches are distributed among these distances:
4 36 0.33
5 59 0.55
6 10 0.09
7 1 0.01
8 2 0.02
ACGTcount: A:0.79, C:0.03, G:0.01, T:0.17
Consensus pattern (5 bp):
ATAAA
Found at i:24381700 original size:17 final size:17
Alignment explanation
Indices: 24381680--24381834 Score: 121
Period size: 17 Copynumber: 9.4 Consensus size: 17
24381670 TAAAGATATA
24381680 AAAAAAATAAAATAAAT
1 AAAAAAATAAAATAAAT
24381697 AAAAAAA-AAAA-AAAT
1 AAAAAAATAAAATAAAT
*
24381712 AAAAAAAATAAAACAAA-
1 -AAAAAAATAAAATAAAT
*
24381729 AATAAAAAT-AAATAAAG
1 AA-AAAAATAAAATAAAT
*
24381746 ATAAAAAAT--ATTAAAT
1 A-AAAAAATAAAATAAAT
** **
24381762 AAACTAATCTAATAAAT
1 AAAAAAATAAAATAAAT
*
24381779 AAAAAAATAAAAACAAAT
1 AAAAAAAT-AAAATAAAT
24381797 AAAAAAAT-AAATAAAAT
1 AAAAAAATAAAAT-AAAT
*
24381814 AAAAAATTAAAA-AAA-
1 AAAAAAATAAAATAAAT
24381829 AAAAAA
1 AAAAAA
24381835 CTAGAACGGC
Statistics
Matches: 114, Mismatches: 13, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
15 15 0.13
16 31 0.27
17 47 0.41
18 21 0.18
ACGTcount: A:0.81, C:0.03, G:0.01, T:0.16
Consensus pattern (17 bp):
AAAAAAATAAAATAAAT
Found at i:24381753 original size:1 final size:1
Alignment explanation
Indices: 24381679--24381736 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
24381669 TTAAAGATAT
* * * * * * *
24381679 AAAAAAAATAAAATAAATAAAAAAAAAAAAAATAAAAAAAATAAAACAAAAATAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
24381737 TAAATAAAGA
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.88, C:0.02, G:0.00, T:0.10
Consensus pattern (1 bp):
A
Found at i:24381825 original size:7 final size:7
Alignment explanation
Indices: 24381677--24381833 Score: 67
Period size: 7 Copynumber: 21.1 Consensus size: 7
24381667 ATTTAAAGAT
24381677 ATAAAAA
1 ATAAAAA
24381684 A-AATAAA
1 ATAA-AAA
*
24381691 ATAAATA
1 ATAAAAA
24381698 A-AAAAA
1 ATAAAAA
24381704 A-AAAAA
1 ATAAAAA
24381710 ATAAAAA
1 ATAAAAA
24381717 A-AATAAA
1 ATAA-AAA
*
24381724 A-CAAAA
1 ATAAAAA
24381730 AT-AAAA
1 ATAAAAA
24381736 ATAAATAAA
1 AT-AA-AAA
24381745 GATAAAAA
1 -ATAAAAA
**
24381753 ATATTAA
1 ATAAAAA
24381760 ATAAACTAA
1 ATAAA--AA
* *
24381769 TCTAATAA
1 -ATAAAAA
24381777 ATAAAAAA
1 AT-AAAAA
24381785 ATAAAAACAA
1 AT--AAA-AA
24381795 ATAAAAAA
1 AT-AAAAA
24381803 ATAAATAAA
1 AT-AA-AAA
24381812 ATAAAAA
1 ATAAAAA
24381819 ATTAAAAA
1 A-TAAAAA
24381827 A-AAAAA
1 ATAAAAA
24381833 A
1 A
24381834 ACTAGAACGG
Statistics
Matches: 122, Mismatches: 11, Indels: 35
0.73 0.07 0.21
Matches are distributed among these distances:
6 31 0.25
7 32 0.26
8 30 0.25
9 20 0.16
10 9 0.07
ACGTcount: A:0.80, C:0.03, G:0.01, T:0.17
Consensus pattern (7 bp):
ATAAAAA
Found at i:24383361 original size:6 final size:7
Alignment explanation
Indices: 24383351--24383425 Score: 50
Period size: 7 Copynumber: 10.7 Consensus size: 7
24383341 TTGAATTCTC
24383351 TTTTTTA
1 TTTTTTA
24383358 TTTTTTA
1 TTTTTTA
*
24383365 TTTTCTCA
1 TTTT-TTA
*
24383373 TTTTTTCC
1 TTTTTT-A
24383381 TCTTTTT-
1 T-TTTTTA
24383388 TTTCTTT-
1 TTT-TTTA
24383395 TTTTTT-
1 TTTTTTA
*
24383401 TTTTTTT
1 TTTTTTA
*
24383408 TTTTTTC
1 TTTTTTA
24383415 TTTTTT-
1 TTTTTTA
24383421 TTTTT
1 TTTTT
24383426 CTCATTTTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
6 16 0.27
7 31 0.53
8 7 0.12
9 5 0.08
ACGTcount: A:0.04, C:0.09, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTTA
Found at i:24383389 original size:11 final size:9
Alignment explanation
Indices: 24383349--24383427 Score: 65
Period size: 9 Copynumber: 8.3 Consensus size: 9
24383339 ATTTGAATTC
24383349 TCTTTTTTAT
1 TCTTTTTT-T
24383359 T-TTTTATTT
1 TCTTTT-TTT
24383368 TCTCATTTTTT
1 TCT--TTTTTT
24383379 CCTCTTTTTTT
1 --TCTTTTTTT
24383390 TCTTTTTTT
1 TCTTTTTTT
24383399 T-TTTTTTT
1 TCTTTTTTT
24383407 T-TTTTTTCT
1 TCTTTTTT-T
*
24383416 TTTTTTTTT
1 TCTTTTTTT
24383425 TCT
1 TCT
24383428 CATTTTTCAT
Statistics
Matches: 60, Mismatches: 1, Indels: 17
0.77 0.01 0.22
Matches are distributed among these distances:
8 14 0.23
9 21 0.35
10 10 0.17
11 9 0.15
12 3 0.05
13 3 0.05
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.85
Consensus pattern (9 bp):
TCTTTTTTT
Found at i:24383399 original size:23 final size:23
Alignment explanation
Indices: 24383373--24383434 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
24383363 TATTTTCTCA
*
24383373 TTTTTTCCTCTTTTTTTTCTTTT
1 TTTTTTTCTCTTTTTTTTCTTTT
* *
24383396 TTTTTTTTTTTTTTTTTTCTTTT
1 TTTTTTTCTCTTTTTTTTCTTTT
*
24383419 TTTTTTTCTCATTTTT
1 TTTTTTTCTCTTTTTT
24383435 CATCCATTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.02, C:0.11, G:0.00, T:0.87
Consensus pattern (23 bp):
TTTTTTTCTCTTTTTTTTCTTTT
Found at i:24383433 original size:12 final size:12
Alignment explanation
Indices: 24383359--24383434 Score: 68
Period size: 12 Copynumber: 6.5 Consensus size: 12
24383349 TCTTTTTTAT
24383359 TTTTTATTTTCTC
1 TTTTT-TTTTCTC
* *
24383372 -ATTTTTTCCTC
1 TTTTTTTTTCTC
24383383 -TTTTTTTTCT-
1 TTTTTTTTTCTC
* *
24383393 TTTTTTTTTTTT
1 TTTTTTTTTCTC
*
24383405 TTTTTTTTTCTT
1 TTTTTTTTTCTC
24383417 TTTTTTTTTCTC
1 TTTTTTTTTCTC
*
24383429 ATTTTT
1 TTTTTT
24383435 CATCCATTGT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
11 23 0.43
12 30 0.57
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTTTTCTC
Found at i:24383434 original size:1 final size:1
Alignment explanation
Indices: 24383383--24383425 Score: 68
Period size: 1 Copynumber: 43.0 Consensus size: 1
24383373 TTTTTTCCTC
* *
24383383 TTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
24383426 CTCATTTTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.00, C:0.05, G:0.00, T:0.95
Consensus pattern (1 bp):
T
Found at i:24383434 original size:11 final size:11
Alignment explanation
Indices: 24383346--24383422 Score: 70
Period size: 11 Copynumber: 7.2 Consensus size: 11
24383336 TCAATTTGAA
24383346 TTCTCTTTTTT
1 TTCTCTTTTTT
*
24383357 ATT-T-TTTATT
1 -TTCTCTTTTTT
*
24383367 TTCTCATTTTT
1 TTCTCTTTTTT
*
24383378 TCCTCTTTTTT
1 TTCTCTTTTTT
24383389 TTCT-TTTTTT
1 TTCTCTTTTTT
* *
24383399 TTTTTTTTTTT
1 TTCTCTTTTTT
*
24383410 TTTTCTTTTTT
1 TTCTCTTTTTT
24383421 TT
1 TT
24383423 TTTCTCATTT
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
9 2 0.04
10 15 0.28
11 35 0.65
12 2 0.04
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (11 bp):
TTCTCTTTTTT
Found at i:24383434 original size:14 final size:12
Alignment explanation
Indices: 24383373--24383427 Score: 85
Period size: 12 Copynumber: 4.7 Consensus size: 12
24383363 TATTTTCTCA
* *
24383373 TTTTTTCCTCTT
1 TTTTTTCTTTTT
24383385 TTTTTTCTTTTT
1 TTTTTTCTTTTT
24383397 TTTTTT-TTTTT
1 TTTTTTCTTTTT
24383408 TTTTTTCTTTTT
1 TTTTTTCTTTTT
24383420 TTTTTTCT
1 TTTTTTCT
24383428 CATTTTTCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
11 11 0.28
12 29 0.73
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:24387490 original size:58 final size:56
Alignment explanation
Indices: 24387275--24387607 Score: 481
Period size: 57 Copynumber: 5.7 Consensus size: 56
24387265 TCTTGTGTAG
* * *
24387275 GGAAAATTGATACTTTCAACTTTTCCTCAATAATCCTTTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAT--ATTTTTTGGAAATTTATTTCTAA
24387334 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTGGAAATTTATTTCTAA
24387391 GGAAAATTGATAC-TTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATA--TTTTTTGGAAA-TTT-ATTTCT-AA
*
24387451 GGAAAATTGATACTTTCAACTTTTCGCCAAAAATATTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTC-CCAAAAATA-TTTTTTGGAAATTTATTTCTAA
24387509 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTGGAAATTTATTTCTAA
24387566 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTT
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATAT-TTTTT
24387608 TTTTATTTAA
Statistics
Matches: 257, Mismatches: 4, Indels: 27
0.89 0.01 0.09
Matches are distributed among these distances:
55 7 0.03
56 15 0.06
57 88 0.34
58 55 0.21
59 35 0.14
60 37 0.14
61 18 0.07
62 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (56 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGGAAATTTATTTCTAA
Found at i:24387567 original size:175 final size:179
Alignment explanation
Indices: 24387275--24387610 Score: 574
Period size: 175 Copynumber: 1.9 Consensus size: 179
24387265 TCTTGTGTAG
* *
24387275 GGAAAATTGATACTTTCAACTTTTCCTCAATAATCCTTTTTTTGAAAATTTATTTCTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAAATTTATTTCTAAGGAAAA
*
24387340 TTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGATAC-
66 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGATACT
*
24387404 TTCAACTTTTCC-CTAAAA-ATATTTTTTTTGGAAATTTTGATTTTCAA
131 TTCAACTTTTCCTCAAAAATATATTTTTTTTGGAAATTTTGATTTTCAA
* *
24387451 GGAAAATTGATACTTTCAACTTTTCGC-CAAAAAT-ATTTTTTTGGAAATTTATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTC-CTCAAAAATCATTTTTTTGAAAATTTATTTCTAAGGAAA
24387514 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGATAC
65 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGATAC
24387579 TTTCAACTTTTCCTCAAAAATATATTTTTTTT
130 TTTCAACTTTTCCTCAAAAATATATTTTTTTT
24387611 TATTTAAAGA
Statistics
Matches: 150, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
175 90 0.60
176 43 0.29
177 6 0.04
178 11 0.07
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.45
Consensus pattern (179 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAAATTTATTTCTAAGGAAAA
TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGATACT
TTCAACTTTTCCTCAAAAATATATTTTTTTTGGAAATTTTGATTTTCAA
Found at i:24387769 original size:12 final size:11
Alignment explanation
Indices: 24387731--24387792 Score: 52
Period size: 12 Copynumber: 5.2 Consensus size: 11
24387721 AATCTAATCT
24387731 AATAAATAAAAA
1 AATAAA-AAAAA
*
24387743 AATAGAAAAACA
1 AATA-AAAAAAA
*
24387755 AATAAACAAATA
1 AATAAA-AAAAA
24387767 AATGAAAATAAAA
1 AAT-AAAA-AAAA
*
24387780 ATTAAAAAAAA
1 AATAAAAAAAA
24387791 AA
1 AA
24387793 AAACTTAGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
11 7 0.17
12 24 0.59
13 10 0.24
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (11 bp):
AATAAAAAAAA
Found at i:24387781 original size:24 final size:24
Alignment explanation
Indices: 24387731--24387793 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
24387721 AATCTAATCT
* *
24387731 AATAAATAAAAAAATAGAAAAACA
1 AATAAACAAAAAAATAGAAAAAAA
*
24387755 AATAAACAAATAAAT-GAAAATAAA
1 AATAAACAAAAAAATAGAAAA-AAA
*
24387779 AATTAAAAAAAAAAA
1 AA-TAAACAAAAAAA
24387794 AACTTAGAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
23 5 0.16
24 17 0.53
25 10 0.31
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.14
Consensus pattern (24 bp):
AATAAACAAAAAAATAGAAAAAAA
Found at i:24392083 original size:15 final size:15
Alignment explanation
Indices: 24392063--24392127 Score: 103
Period size: 15 Copynumber: 4.2 Consensus size: 15
24392053 ATACTATGCT
24392063 TGAAAAAATGAAAAA
1 TGAAAAAATGAAAAA
*
24392078 TGAAAAAATAAAAAA
1 TGAAAAAATGAAAAA
24392093 TGAAAAAAATGAAAAAA
1 TG-AAAAAATG-AAAAA
24392110 TGAAAAAATGAAAAA
1 TGAAAAAATGAAAAA
24392125 TGA
1 TGA
24392128 TGAAAAAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
15 24 0.52
16 15 0.33
17 7 0.15
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.14
Consensus pattern (15 bp):
TGAAAAAATGAAAAA
Found at i:24392152 original size:8 final size:8
Alignment explanation
Indices: 24392063--24392151 Score: 110
Period size: 8 Copynumber: 10.9 Consensus size: 8
24392053 ATACTATGCT
24392063 TGAAAAAA
1 TGAAAAAA
24392071 TG-AAAAA
1 TGAAAAAA
24392078 TGAAAAAA
1 TGAAAAAA
24392086 T-AAAAAA
1 TGAAAAAA
24392093 TGAAAAAAA
1 TG-AAAAAA
24392102 TGAAAAAA
1 TGAAAAAA
24392110 TGAAAAAA
1 TGAAAAAA
24392118 TGAAAAATGA
1 TGAAAAA--A
24392128 TGAAAAAAA
1 TG-AAAAAA
* *
24392137 AGAAAAAG
1 TGAAAAAA
24392145 TGAAAAA
1 TGAAAAA
24392152 GGAGGACTCA
Statistics
Matches: 72, Mismatches: 3, Indels: 12
0.83 0.03 0.14
Matches are distributed among these distances:
7 14 0.19
8 40 0.56
9 10 0.14
10 3 0.04
11 5 0.07
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.12
Consensus pattern (8 bp):
TGAAAAAA
Found at i:24393224 original size:41 final size:41
Alignment explanation
Indices: 24393161--24393372 Score: 354
Period size: 41 Copynumber: 5.1 Consensus size: 41
24393151 ATGATTGTCA
24393161 AGGAGCAATTTA-TTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
24393202 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
24393243 AAGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
24393285 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
24393326 AGGAGCAATTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
24393367 AGGAGC
1 AGGAGC
24393373 TTTGGTCAAA
Statistics
Matches: 162, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
41 118 0.73
42 44 0.27
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:24393271 original size:83 final size:82
Alignment explanation
Indices: 24393163--24393372 Score: 357
Period size: 83 Copynumber: 2.5 Consensus size: 82
24393153 GATTGTCAAG
*
24393163 GAGCAATTTATTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGT
1 GAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGT
24393228 GGTGCCTCTGTTTAGAA
66 GGTGCCTCTGTTTAGAA
*
24393245 GAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTCG
1 GAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCG
*
24393310 TGGTGCCTCTGTTTAGAG
65 TGGTGCCTCTGTTTAGAA
* * *
24393328 GAGCAATTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGC
1 GAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
24393373 TTTGGTCAAA
Statistics
Matches: 120, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
82 41 0.34
83 79 0.66
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (82 bp):
GAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGT
GGTGCCTCTGTTTAGAA
Found at i:24393401 original size:16 final size:15
Alignment explanation
Indices: 24393379--24393423 Score: 81
Period size: 16 Copynumber: 2.9 Consensus size: 15
24393369 GAGCTTTGGT
24393379 CAAAAAAATAAAAAA
1 CAAAAAAATAAAAAA
24393394 CAAAAAAAATAAAAAA
1 C-AAAAAAATAAAAAA
24393410 CAAAAAAATAAAAA
1 CAAAAAAATAAAAA
24393424 GTGACAACGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 14 0.48
16 15 0.52
ACGTcount: A:0.87, C:0.07, G:0.00, T:0.07
Consensus pattern (15 bp):
CAAAAAAATAAAAAA
Found at i:24393609 original size:10 final size:11
Alignment explanation
Indices: 24393591--24393620 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
24393581 TTATCCTGTA
24393591 TATTTTTTTTC
1 TATTTTTTTTC
*
24393602 TATTTTTTTTG
1 TATTTTTTTTC
24393613 TATTTTTT
1 TATTTTTT
24393621 GTATTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.03, G:0.03, T:0.83
Consensus pattern (11 bp):
TATTTTTTTTC
Found at i:24393636 original size:20 final size:19
Alignment explanation
Indices: 24393591--24393637 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
24393581 TTATCCTGTA
24393591 TATT-TTTTTTCTATTTTT
1 TATTATTTTTTCTATTTTT
* *
24393609 TTTGTATTTTTTGTATTTTAT
1 TAT-TATTTTTTCTATTTT-T
24393630 TATTATTT
1 TATTATTT
24393638 ATTATTATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 2 0.09
19 1 0.04
20 17 0.74
21 3 0.13
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (19 bp):
TATTATTTTTTCTATTTTT
Found at i:24393638 original size:10 final size:10
Alignment explanation
Indices: 24393625--24393729 Score: 53
Period size: 10 Copynumber: 10.6 Consensus size: 10
24393615 TTTTTTGTAT
24393625 TTTATTATTA
1 TTTATTATTA
24393635 TTTATTATTA
1 TTTATTATTA
24393645 -TTATTATT-
1 TTTATTATTA
*
24393653 TATTAATATATA
1 T-TTATTAT-TA
*
24393665 TTTATT-TTT
1 TTTATTATTA
*
24393674 TTTAGTATTA
1 TTTATTATTA
* *
24393684 --GATTA-GA
1 TTTATTATTA
24393691 TTTA-TATGTA
1 TTTATTAT-TA
*
24393701 TATAGTTATATA
1 TTTA-TTAT-TA
24393713 TTTATTATTA
1 TTTATTATTA
24393723 TTATATT
1 TT-TATT
24393730 TTTTTTTTTA
Statistics
Matches: 70, Mismatches: 13, Indels: 23
0.66 0.12 0.22
Matches are distributed among these distances:
7 1 0.01
8 5 0.07
9 15 0.21
10 27 0.39
11 13 0.19
12 9 0.13
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (10 bp):
TTTATTATTA
Found at i:24393644 original size:13 final size:13
Alignment explanation
Indices: 24393625--24393670 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
24393615 TTTTTTGTAT
24393625 TTTATTATTATT-
1 TTTATTATTATTA
24393637 TATTATTATTATTA
1 T-TTATTATTATTA
*
24393651 TTTATTAATATATA
1 TTTATTATTAT-TA
24393665 TTTATT
1 TTTATT
24393671 TTTTTTAGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 1 0.03
13 20 0.67
14 9 0.30
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTATTATTATTA
Found at i:24393760 original size:24 final size:24
Alignment explanation
Indices: 24393728--24393775 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
24393718 TATTATTATA
* *
24393728 TTTTTTTTTTTAAT-TTTTTTTTG
1 TTTTTTTTTGTAATATATTTTTTG
24393751 TTTTTGTTTTGTAATATATTTTTTG
1 TTTTT-TTTTGTAATATATTTTTTG
24393776 GTTTATCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.24
24 8 0.38
25 8 0.38
ACGTcount: A:0.12, C:0.00, G:0.08, T:0.79
Consensus pattern (24 bp):
TTTTTTTTTGTAATATATTTTTTG
Found at i:24394237 original size:25 final size:25
Alignment explanation
Indices: 24394184--24394237 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
24394174 CTGGGAGTGA
*
24394184 GAAAAATTTTTTAAAAATTTTTGGC
1 GAAAAATTTTTTAAAAATTTCTGGC
**
24394209 GAAAAATTTTTTTGGAAATTTCTGG-
1 GAAAAA-TTTTTTAAAAATTTCTGGC
24394234 GAAA
1 GAAA
24394238 TTTCCAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.39, C:0.04, G:0.17, T:0.41
Consensus pattern (25 bp):
GAAAAATTTTTTAAAAATTTCTGGC
Found at i:24394813 original size:22 final size:21
Alignment explanation
Indices: 24394788--24394829 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
24394778 TTAGATTAGA
24394788 TTTATTTAATATTTTTTTTATC
1 TTTATTTAAT-TTTTTTTTATC
*
24394810 TTTATTTTATTTTTTTTTAT
1 TTTATTTAATTTTTTTTTAT
24394830 TATTTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTATTTAATTTTTTTTTATC
Found at i:24394820 original size:5 final size:5
Alignment explanation
Indices: 24394797--24394873 Score: 67
Period size: 5 Copynumber: 15.8 Consensus size: 5
24394787 ATTTATTTAA
*
24394797 TATTT T-TTT TATCTT TATTT TATTT T-TTT T-TAT TATTT TATTT T-TATT
1 TATTT TATTT TAT-TT TATTT TATTT TATTT TATTT TATTT TATTT TAT-TT
24394845 TATTT TCACTTT TA-TT T-TTT TATTT TATT
1 TATTT T-A-TTT TATTT TATTT TATTT TATT
24394874 ATTCTATTTT
Statistics
Matches: 61, Mismatches: 2, Indels: 18
0.75 0.02 0.22
Matches are distributed among these distances:
4 18 0.30
5 31 0.51
6 8 0.13
7 4 0.07
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:24394832 original size:24 final size:23
Alignment explanation
Indices: 24394799--24394850 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 23
24394789 TTATTTAATA
24394799 TTTTTTTTATCTTTA-TTTTATTT
1 TTTTTTTTAT-TTTATTTTTATTT
24394822 TTTTTTATTATTTTATTTTTATTT
1 TTTTTT-TTATTTTATTTTTATTT
*
24394846 ATTTT
1 TTTTT
24394851 CACTTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (23 bp):
TTTTTTTTATTTTATTTTTATTT
Found at i:24394839 original size:38 final size:41
Alignment explanation
Indices: 24394797--24394888 Score: 111
Period size: 43 Copynumber: 2.3 Consensus size: 41
24394787 ATTTATTTAA
*
24394797 TATTTTTTTTATCTTT-A-TTTTA-TTTTT-TTTTATTATTT
1 TATTTTTTTTAT-TTTCACTTTTATTTTTTATTTTATTATTC
24394835 TATTTTTATTTATTTTCACTTTTATTTTTTTATTTTATTATTC
1 TATTTTT-TTTATTTTCACTTTTA-TTTTTTATTTTATTATTC
*
24394878 TATTTTCTTTA
1 TATTTTTTTTA
24394889 AATAAAAATC
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
38 10 0.22
39 6 0.13
40 5 0.11
42 9 0.20
43 16 0.35
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.77
Consensus pattern (41 bp):
TATTTTTTTTATTTTCACTTTTATTTTTTATTTTATTATTC
Found at i:24394842 original size:29 final size:29
Alignment explanation
Indices: 24394803--24394887 Score: 84
Period size: 30 Copynumber: 2.8 Consensus size: 29
24394793 TTAATATTTT
* *
24394803 TTTTATCTTTATTTTATTTT-TTTTTATTA
1 TTTTATTTTTA-TTTATTTTACTTTTATTA
*
24394832 TTTTATTTTTATTTATTTTCACTTTTATTT
1 TTTTATTTTTATTTATTTT-ACTTTTATTA
24394862 TTTTATTTTATTATTCTATTTT-CTTT
1 TTTTA-TTT-TTATT-TATTTTACTTT
24394888 AAATAAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 8 0.17
29 10 0.21
30 12 0.25
31 7 0.15
32 5 0.10
33 6 0.12
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (29 bp):
TTTTATTTTTATTTATTTTACTTTTATTA
Found at i:24394847 original size:33 final size:37
Alignment explanation
Indices: 24394792--24394882 Score: 104
Period size: 33 Copynumber: 2.6 Consensus size: 37
24394782 ATTAGATTTA
* *
24394792 TTTAATATTTT-TTTTATCTTTATTTT-A-TTTT-TT
1 TTTATTATTTTATTTTATATTTATTTTCACTTTTATT
24394825 TTTATTATTTTATTTT-TATTTATTTTCACTTTTATT
1 TTTATTATTTTATTTTATATTTATTTTCACTTTTATT
*
24394861 TTT-TTATTTTATTATTCTATTT
1 TTTATTATTTTATT-TTATATTT
24394883 TCTTTAAATA
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
33 19 0.38
34 5 0.10
35 14 0.28
36 7 0.14
37 5 0.10
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (37 bp):
TTTATTATTTTATTTTATATTTATTTTCACTTTTATT
Found at i:24394863 original size:23 final size:20
Alignment explanation
Indices: 24394788--24394873 Score: 90
Period size: 18 Copynumber: 4.3 Consensus size: 20
24394778 TTAGATTAGA
*
24394788 TTTATTTAATATTTTTTTTAT
1 TTTATTTTAT-TTTTTTTTAT
24394809 CTTTATTTTATTTTTTTTTA-
1 -TTTATTTTATTTTTTTTTAT
*
24394829 -TTATTTTATTTTTATTTAT
1 TTTATTTTATTTTTTTTTAT
24394848 TTTCACTTTTA--TTTTTTTAT
1 TTT-A-TTTTATTTTTTTTTAT
24394868 TTTATT
1 TTTATT
24394874 ATTCTATTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
18 19 0.33
19 1 0.02
20 13 0.23
21 10 0.18
22 14 0.25
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTATTTTATTTTTTTTTAT
Found at i:24394963 original size:59 final size:57
Alignment explanation
Indices: 24394900--24395178 Score: 393
Period size: 59 Copynumber: 4.7 Consensus size: 57
24394890 ATAAAAATCA
24394900 AAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
1 AAATTTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTA-AAAT
24394959 AAATTTTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
1 AAA-TTTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTA-AAAT
*
24395018 AAATTTTCAAAAAAAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAGAAT
1 AAATTTTC---AAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAA-AAT
*
24395080 AAA-TTTC-CAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAT
1 AAATTTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAT
*
24395136 AAATTTCCAAAAAAATATATTTTTGGGAAAAAGTTGAAAGTAT
1 AAATTTTCAAAAAAA-ATATTTTTGGG-AAAAGTTGAAAGTAT
24395179 TTAATTTTTT
Statistics
Matches: 202, Mismatches: 6, Indels: 24
0.87 0.03 0.10
Matches are distributed among these distances:
56 6 0.03
57 45 0.22
58 14 0.07
59 78 0.39
60 5 0.02
61 6 0.03
62 48 0.24
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (57 bp):
AAATTTTCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAT
Found at i:24396202 original size:41 final size:39
Alignment explanation
Indices: 24396157--24396235 Score: 140
Period size: 41 Copynumber: 2.0 Consensus size: 39
24396147 AATAAATGAG
24396157 ATTTGATTTGAAAAAAAATAAAAAAAAAAGAAGGAAATCAT
1 ATTTGATTTGAAAAAAAA-AAAAAAAAAA-AAGGAAATCAT
24396198 ATTTGATTTGAAAAAAAAAAAAAAAAAAAAGGAAATCA
1 ATTTGATTTGAAAAAAAAAAAAAAAAAAAAGGAAATCA
24396236 ACAGTTTATC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
39 10 0.26
40 10 0.26
41 18 0.47
ACGTcount: A:0.66, C:0.03, G:0.11, T:0.20
Consensus pattern (39 bp):
ATTTGATTTGAAAAAAAAAAAAAAAAAAAAGGAAATCAT
Found at i:24398286 original size:27 final size:25
Alignment explanation
Indices: 24398245--24398294 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
24398235 ATTAATTATA
*
24398245 ATTAACATATTTTTATTTAAAAAATAT
1 ATTAACATATATTTA--TAAAAAATAT
*
24398272 ATTAATATATATTTATAAAAAAT
1 ATTAACATATATTTATAAAAAAT
24398295 TGTATAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.38
27 13 0.62
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTAACATATATTTATAAAAAATAT
Found at i:24398466 original size:17 final size:18
Alignment explanation
Indices: 24398440--24398473 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
24398430 ATATTCGTTG
*
24398440 AATATAAATATGAAAATA
1 AATATAAATATAAAAATA
24398458 AATAT-AATATAAAAAT
1 AATATAAATATAAAAAT
24398474 TCATATGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (18 bp):
AATATAAATATAAAAATA
Found at i:24400542 original size:15 final size:15
Alignment explanation
Indices: 24400519--24400548 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24400509 ATATTAAAAT
24400519 AATAAAAAAATTTTA
1 AATAAAAAAATTTTA
*
24400534 AATATAAAAATTTTA
1 AATAAAAAAATTTTA
24400549 TTAAATTCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AATAAAAAAATTTTA
Found at i:24402793 original size:12 final size:12
Alignment explanation
Indices: 24402776--24402800 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24402766 TATAAAAATA
24402776 AATTTTTTAATT
1 AATTTTTTAATT
24402788 AATTTTTTAATT
1 AATTTTTTAATT
24402800 A
1 A
24402801 TATATATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
AATTTTTTAATT
Found at i:24402827 original size:30 final size:30
Alignment explanation
Indices: 24402787--24402854 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
24402777 ATTTTTTAAT
* * *
24402787 TAAT-TTTTTAATTATATATATTTATATAA
1 TAATATTTTTAAATATATATATTTAAAAAA
* *
24402816 TGATATTTTTAAATATTTATATTTAAAAAA
1 TAATATTTTTAAATATATATATTTAAAAAA
24402846 TAATATTTT
1 TAATATTTT
24402855 ATTAATTTCG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 3 0.09
30 29 0.91
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (30 bp):
TAATATTTTTAAATATATATATTTAAAAAA
Found at i:24403832 original size:14 final size:14
Alignment explanation
Indices: 24403815--24403868 Score: 63
Period size: 14 Copynumber: 3.7 Consensus size: 14
24403805 ATATATCACT
*
24403815 TTTAAAATATAACA
1 TTTAAAATTTAACA
*
24403829 TTTAGTAAATTTAAAA
1 TTTA--AAATTTAACA
*
24403845 TTTAAAATTTCACA
1 TTTAAAATTTAACA
24403859 TTTAAAATTT
1 TTTAAAATTT
24403869 TTATTTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
14 22 0.65
16 12 0.35
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (14 bp):
TTTAAAATTTAACA
Found at i:24403847 original size:7 final size:7
Alignment explanation
Indices: 24403815--24403868 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
24403805 ATATATCACT
24403815 TTTAAAA
1 TTTAAAA
* *
24403822 TATAACA
1 TTTAAAA
24403829 TTTAGTAAA
1 TTTA--AAA
24403838 TTTAAAA
1 TTTAAAA
24403845 TTTAAAA
1 TTTAAAA
* *
24403852 TTTCACA
1 TTTAAAA
24403859 TTTAAAA
1 TTTAAAA
24403866 TTT
1 TTT
24403869 TTATTTTTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
7 31 0.84
9 6 0.16
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (7 bp):
TTTAAAA
Found at i:24404976 original size:6 final size:6
Alignment explanation
Indices: 24404965--24405006 Score: 84
Period size: 6 Copynumber: 7.0 Consensus size: 6
24404955 CTAACTCCAT
24404965 GAGTGA GAGTGA GAGTGA GAGTGA GAGTGA GAGTGA GAGTGA
1 GAGTGA GAGTGA GAGTGA GAGTGA GAGTGA GAGTGA GAGTGA
24405007 TACTCTCAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.50, T:0.17
Consensus pattern (6 bp):
GAGTGA
Found at i:24405394 original size:13 final size:12
Alignment explanation
Indices: 24405386--24405418 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
24405376 TTAAATTTAT
24405386 TTAAAAAATATA
1 TTAAAAAATATA
24405398 TTAAAATAATATA
1 TTAAAA-AATATA
24405411 -TAAAAAAT
1 TTAAAAAAT
24405419 TAAAAATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 3 0.15
12 11 0.55
13 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TTAAAAAATATA
Found at i:24411720 original size:36 final size:37
Alignment explanation
Indices: 24411656--24411737 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 37
24411646 TTCTATATAG
* *
24411656 TCATATTTTTTTGTTTAAATAAACTTTATTT-AAACAA
1 TCATGTTTTTTTGTTCAAATAAACTTTATTTGAAAC-A
* * *
24411693 TCATGTTTTTTTGTTCAGATATA-TTTATTTGAATCA
1 TCATGTTTTTTTGTTCAAATAAACTTTATTTGAAACA
24411729 TCATGTTTT
1 TCATGTTTT
24411738 CTTATATTCA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
36 17 0.44
37 22 0.56
ACGTcount: A:0.29, C:0.09, G:0.07, T:0.55
Consensus pattern (37 bp):
TCATGTTTTTTTGTTCAAATAAACTTTATTTGAAACA
Found at i:24417144 original size:18 final size:19
Alignment explanation
Indices: 24417130--24417170 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
24417120 TTAAAAATAT
24417130 GAAAATA-AACGAAAATTG
1 GAAAATAGAACGAAAATTG
*
24417148 GAAAATAGAATGAAAA-TG
1 GAAAATAGAACGAAAATTG
24417166 GAAAA
1 GAAAA
24417171 GGAAACCTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.63, C:0.02, G:0.20, T:0.15
Consensus pattern (19 bp):
GAAAATAGAACGAAAATTG
Found at i:24417770 original size:11 final size:11
Alignment explanation
Indices: 24417751--24417780 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
24417741 CCTACTACCA
24417751 AAAAATTTTCC
1 AAAAATTTTCC
*
24417762 AAAATTTTTCC
1 AAAAATTTTCC
24417773 AAAAATTT
1 AAAAATTT
24417781 CTTGAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (11 bp):
AAAAATTTTCC
Found at i:24418178 original size:43 final size:42
Alignment explanation
Indices: 24418116--24418213 Score: 103
Period size: 43 Copynumber: 2.3 Consensus size: 42
24418106 GATGATGATG
*
24418116 ATACTAATAATAATAATAATACG-GTACAATAATA-ATATTAATA
1 ATACT-ATAATAATAATAATA-GTATACAATAATATATATT-ATA
* *
24418159 ATACTATAATAATTTATAATAGTATACCATAATATTATATTATA
1 ATACTATAATAA-TAATAATAGTATACAATAATA-TATATTATA
24418203 ATA-TATAATAA
1 ATACTATAATAA
24418214 CAAAAATACT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
42 8 0.17
43 29 0.60
44 6 0.12
45 5 0.10
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (42 bp):
ATACTATAATAATAATAATAGTATACAATAATATATATTATA
Found at i:24418179 original size:18 final size:20
Alignment explanation
Indices: 24418116--24418195 Score: 65
Period size: 20 Copynumber: 3.9 Consensus size: 20
24418106 GATGATGATG
*
24418116 ATACTAATAATAATAATAATA
1 ATACT-ATAATAATATTAATA
* *
24418137 CGGTACAATAATAATATTAATA
1 --ATACTATAATAATATTAATA
24418159 ATACTATAATAAT-TT-ATA
1 ATACTATAATAATATTAATA
*
24418177 ATAGTATACCATAATATTA
1 ATACTATA--ATAATATTA
24418196 TATTATAATA
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
18 10 0.21
19 2 0.04
20 16 0.34
21 2 0.04
22 14 0.30
23 3 0.06
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (20 bp):
ATACTATAATAATATTAATA
Found at i:24418185 original size:23 final size:22
Alignment explanation
Indices: 24418144--24418209 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 22
24418134 ATACGGTACA
* *
24418144 ATAATAATAT-TAATA-ATACT
1 ATAATAATTTATAATATATACC
24418164 ATAATAATTTATAATAGTATACC
1 ATAATAATTTATAATA-TATACC
24418187 ATAATATTATATTATAATATATA
1 ATAATA--AT-TTATAATATATA
24418210 ATAACAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
20 9 0.24
21 5 0.13
23 10 0.26
25 6 0.16
26 8 0.21
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATAATTTATAATATATACC
Found at i:24419057 original size:26 final size:26
Alignment explanation
Indices: 24419017--24419077 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
24419007 TGGTGTAGAT
*
24419017 GCCCATTTTGGTTCG-GACCCAATTAG
1 GCCCATTTTGATTCGAG-CCCAATTAG
* *
24419043 GCCCATTTTGATTCGAGCTCGATTAG
1 GCCCATTTTGATTCGAGCCCAATTAG
24419069 GCCCATTTT
1 GCCCATTTT
24419078 AGTTTGGGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 30 0.97
27 1 0.03
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.34
Consensus pattern (26 bp):
GCCCATTTTGATTCGAGCCCAATTAG
Found at i:24419091 original size:26 final size:25
Alignment explanation
Indices: 24419017--24419091 Score: 78
Period size: 26 Copynumber: 2.9 Consensus size: 25
24419007 TGGTGTAGAT
* *
24419017 GCCCATTTTGGTTCGGACCCAATTAG
1 GCCCATTTT-GTTCGGGCCCGATTAG
* *
24419043 GCCCATTTTGATTCGAGCTCGATTAG
1 GCCCATTTTG-TTCGGGCCCGATTAG
*
24419069 GCCCATTTTAGTTTGGGCCCGAT
1 GCCCATTTT-GTTCGGGCCCGAT
24419092 ATGGTTCGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.03
26 38 0.95
27 1 0.03
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.33
Consensus pattern (25 bp):
GCCCATTTTGTTCGGGCCCGATTAG
Found at i:24419251 original size:3 final size:3
Alignment explanation
Indices: 24419243--24419300 Score: 80
Period size: 3 Copynumber: 19.3 Consensus size: 3
24419233 GTGCTTTTAC
* * * *
24419243 TAT TAT TAT TAT TAT CAT TTT TAT TAG TAT TAT TAG TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
24419291 TAT TAT TAT T
1 TAT TAT TAT T
24419301 TTCTTTTCCT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:24419872 original size:19 final size:19
Alignment explanation
Indices: 24419839--24419879 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
24419829 TCTGGCGAAA
**
24419839 TTTTCAGAATTCGATAGGT
1 TTTTCAGAAACCGATAGGT
*
24419858 TTTTCAGAAACCGATGGGT
1 TTTTCAGAAACCGATAGGT
24419877 TTT
1 TTT
24419880 CTAATTTTCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.41
Consensus pattern (19 bp):
TTTTCAGAAACCGATAGGT
Found at i:24420115 original size:9 final size:9
Alignment explanation
Indices: 24420094--24420136 Score: 52
Period size: 10 Copynumber: 4.7 Consensus size: 9
24420084 TTGTAGGTTT
24420094 TTTTTATTA
1 TTTTTATTA
24420103 -TTTTATTA
1 TTTTTATTA
*
24420111 TTTTTATTT
1 TTTTTATTA
24420120 TGTTTTATTTA
1 T-TTTTA-TTA
24420131 TTTTTA
1 TTTTTA
24420137 CCCATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
8 8 0.28
9 8 0.28
10 10 0.34
11 3 0.10
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (9 bp):
TTTTTATTA
Found at i:24420177 original size:9 final size:8
Alignment explanation
Indices: 24420162--24420191 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
24420152 TTGATTTAAA
24420162 AAAAAAAG
1 AAAAAAAG
24420170 AGAAAAAAG
1 A-AAAAAAG
24420179 AAAAAAAG
1 AAAAAAAG
24420187 AAAAA
1 AAAAA
24420192 TTATTCTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:24431480 original size:120 final size:119
Alignment explanation
Indices: 24431274--24431873 Score: 624
Period size: 120 Copynumber: 5.0 Consensus size: 119
24431264 ATTATCCCAC
* *
24431274 TCACTTGATCTTGGCTCAGTCTAGATTATTTTTTATGATTCGTGGTTCTGT-CTCGATCATTTAT
1 TCACTTGATCTTGGCTCAGTCCAGATTATTTTTCATGATTCGTGGTTCTGTCCT-GATCATTTAT
*
24431338 TTTTGACCTCGACTCGATCTTGGTCACTTCATTTTTGACTTATGGTTTCATCCCGA
65 TTTTGACCTTGACTCG-TCTTGGTCACTTCATTTTTGACTTATGGTTTCATCCCGA
* * * * *
24431394 TCACTT-AGTCTTGGCTCAGTCCAGATCATTCTTCATAATTCATGGTTTTGTCCTGATCATTTAT
1 TCACTTGA-TCTTGGCTCAGTCCAGATTATTTTTCATGATTCGTGGTTCTGTCCTGATCATTTAT
* * * *
24431458 TTTTGACATTGACTCAGTCTTGGTCACTTCATTTTTGACTTGTGGTTTCACCCCGG
65 TTTTGACCTTGACTC-GTCTTGGTCACTTCATTTTTGACTTATGGTTTCATCCCGA
* * * **
24431514 TCACTTGATCTTGGCTCAATCTAGATCATTTTTCATGATTCGTGGTTCCATCCCT-ATCATTTAT
1 TCACTTGATCTTGGCTCAGTCCAGATTATTTTTCATGATTCGTGGTTCTGT-CCTGATCATTTAT
* ** *
24431578 TTTCGACCTTGACTCGATCTTGGTCACTTTTTTTTTGACTTATGGTTTCACCCCGA
65 TTTTGACCTTGACTCG-TCTTGGTCACTTCATTTTTGACTTATGGTTTCATCCCGA
* * * * * * *
24431634 TCACCTGATTTTGGCTCAGTCCAAATTATTCTTCATAATTCTTGGTTCTGTCCCGATCATTTATT
1 TCACTTGATCTTGGCTCAGTCCAGATTATTTTTCATGATTCGTGGTTCTGTCCTGATCATTTATT
* * * * * ***
24431699 TTTTACCTTGACTCGGTCCTGGTCACTTTA-TTTTGAATTGTGGTTTCATCTTAA
66 TTTGACCTTGACTC-GTCTTGGTCACTTCATTTTTGACTTATGGTTTCATCCCGA
* * * *
24431753 TAATTTGATCTTGGCTCAGTCCAGATTATTTTTCATGATTTGTGGTT-TCAT-CTCGATCA-TTA
1 TCACTTGATCTTGGCTCAGTCCAGATTATTTTTCATGATTCGTGGTTCT-GTCCT-GATCATTTA
* * * * * * *
24431815 TTTTCGACCTCGACTTGGTCCTGGTCACTTCA--TTAGACTTATGGTTTAATCCTGA
64 TTTTTGACCTTGAC-TCGTCTTGGTCACTTCATTTTTGACTTATGGTTTCATCCCGA
24431870 TCAC
1 TCAC
24431874 CTAACCTTGG
Statistics
Matches: 397, Mismatches: 72, Indels: 25
0.80 0.15 0.05
Matches are distributed among these distances:
117 19 0.05
118 30 0.08
119 67 0.17
120 273 0.69
121 8 0.02
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.45
Consensus pattern (119 bp):
TCACTTGATCTTGGCTCAGTCCAGATTATTTTTCATGATTCGTGGTTCTGTCCTGATCATTTATT
TTTGACCTTGACTCGTCTTGGTCACTTCATTTTTGACTTATGGTTTCATCCCGA
Found at i:24431697 original size:240 final size:239
Alignment explanation
Indices: 24431269--24431861 Score: 780
Period size: 240 Copynumber: 2.5 Consensus size: 239
24431259 TTTGCATTAT
* * **
24431269 CCCACTCACTTGATCTTGGCTCAGTCTAGATTATTTTTTATGATTCGTGGTTCTGTCTCGATCAT
1 CCCAATCACTTGATCTTGGCTCAGTCTAGATTATTTTTCATGATTCGTGGTTCCATCTCGATCAT
* *
24431334 TTATTTTTGACCTCGACTCGATCTTGGTCACTTCATTTTTGACTTATGGTTTCATCCCGATCACT
66 TTATTTTCGACCTCGACTCGATCTTGGTCACTTCATTTTTGACTTATGGTTTCACCCCGATCACT
* * * *
24431399 TAGTCTTGGCTCAGTCCAGATCATTCTTCATAATTCATGGTTTTGTCCTGATCATTTATTTTTGA
131 GAGTCTTGGCTCAGTCCAAATCATTCTTCATAATTCATGGTTCTGTCCCGATCATTTATTTTTGA
* *
24431464 CATTGACTCAGTCTTGGTCACTTCATTTTTGACTTGTGGTTTCAC
196 CATTGACTCAGTCCTGGTCACTTCA-TTTTGAATTGTGGTTTCAC
** * * * *
24431509 CCCGGTCACTTGATCTTGGCTCAATCTAGATCATTTTTCATGATTCGTGGTTCCATCCCTATCAT
1 CCCAATCACTTGATCTTGGCTCAGTCTAGATTATTTTTCATGATTCGTGGTTCCATCTCGATCAT
* **
24431574 TTATTTTCGACCTTGACTCGATCTTGGTCACTTTTTTTTTGACTTATGGTTTCACCCCGATCACC
66 TTATTTTCGACCTCGACTCGATCTTGGTCACTTCATTTTTGACTTATGGTTTCACCCCGATCA-C
* * * *
24431639 TGA-TTTTGGCTCAGTCCAAATTATTCTTCATAATTCTTGGTTCTGTCCCGATCATTTATTTTTT
130 TGAGTCTTGGCTCAGTCCAAATCATTCTTCATAATTCATGGTTCTGTCCCGATCATTTATTTTTG
* * * *
24431703 ACCTTGACTCGGTCCTGGTCACTTTATTTTGAATTGTGGTTTCAT
195 ACATTGACTCAGTCCTGGTCACTTCATTTTGAATTGTGGTTTCAC
** * * * * *
24431748 CTTAATAATTTGATCTTGGCTCAGTCCAGATTATTTTTCATGATTTGTGGTTTCATCTCGATCA-
1 CCCAATCACTTGATCTTGGCTCAGTCTAGATTATTTTTCATGATTCGTGGTTCCATCTCGATCAT
* * * *
24431812 TTATTTTCGACCTCGACTTGGTCCTGGTCACTTCA--TTAGACTTATGGTTT
66 TTATTTTCGACCTCGACTCGATCTTGGTCACTTCATTTTTGACTTATGGTTT
24431862 AATCCTGATC
Statistics
Matches: 304, Mismatches: 48, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
236 14 0.05
238 29 0.10
239 68 0.22
240 190 0.62
241 3 0.01
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.45
Consensus pattern (239 bp):
CCCAATCACTTGATCTTGGCTCAGTCTAGATTATTTTTCATGATTCGTGGTTCCATCTCGATCAT
TTATTTTCGACCTCGACTCGATCTTGGTCACTTCATTTTTGACTTATGGTTTCACCCCGATCACT
GAGTCTTGGCTCAGTCCAAATCATTCTTCATAATTCATGGTTCTGTCCCGATCATTTATTTTTGA
CATTGACTCAGTCCTGGTCACTTCATTTTGAATTGTGGTTTCAC
Found at i:24432037 original size:25 final size:26
Alignment explanation
Indices: 24432004--24432066 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
24431994 ATCCGAACTT
* * *
24432004 GATTAGGCCCATTTTGG-TCGGGCTC
1 GATTAGGCCCATATTGGTTCGAGCCC
*
24432029 GATTAGGCCCATATTGGTTTGAGCCC
1 GATTAGGCCCATATTGGTTCGAGCCC
24432055 GATTAGGCCCAT
1 GATTAGGCCCAT
24432067 CTTAACCTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
25 16 0.48
26 17 0.52
ACGTcount: A:0.17, C:0.24, G:0.29, T:0.30
Consensus pattern (26 bp):
GATTAGGCCCATATTGGTTCGAGCCC
Found at i:24432201 original size:3 final size:3
Alignment explanation
Indices: 24432193--24432253 Score: 95
Period size: 3 Copynumber: 20.3 Consensus size: 3
24432183 GTGTTTTTAC
* * *
24432193 TAT TAT TAT TAT TGT TTT TAT TAT TAG TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
24432241 TAT TAT TAT TAT T
1 TAT TAT TAT TAT T
24432254 CATTTCTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:24433132 original size:19 final size:19
Alignment explanation
Indices: 24433108--24433148 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
24433098 TCGTAGGTTT
24433108 TTTTTTCATTTTCT-TTTTA
1 TTTTTTCA-TTTCTATTTTA
*
24433127 TTTTTTGATTTCTATTTTA
1 TTTTTTCATTTCTATTTTA
24433146 TTT
1 TTT
24433149 ATTTTTACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTTTTCATTTCTATTTTA
Found at i:24433196 original size:9 final size:8
Alignment explanation
Indices: 24433181--24433210 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
24433171 TTGATTTAAA
24433181 AAAAAAAG
1 AAAAAAAG
24433189 AGAAAAAAG
1 A-AAAAAAG
24433198 AAAAAAAG
1 AAAAAAAG
24433206 AAAAA
1 AAAAA
24433211 TTATTTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:24434270 original size:47 final size:46
Alignment explanation
Indices: 24434182--24434273 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 46
24434172 GAACTTTCTC
* *
24434182 TTTTTTTTTGTTCAAGCTGCCCTTTCGAGTTTTCAATTTAAACTTT
1 TTTTTTTTTGTTCAAGCCGCCCTTTCGAGTTTTCAACTTAAACTTT
* * *
24434228 TTTTTTTATTGTTCAAGCCGTCTTTTC-AGTTTTTTAACTTAAACTT
1 TTTTTTT-TTGTTCAAGCCGCCCTTTCGAG-TTTTCAACTTAAACTT
24434274 GAGCTTTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
46 9 0.23
47 30 0.77
ACGTcount: A:0.18, C:0.16, G:0.10, T:0.55
Consensus pattern (46 bp):
TTTTTTTTTGTTCAAGCCGCCCTTTCGAGTTTTCAACTTAAACTTT
Found at i:24439417 original size:5 final size:5
Alignment explanation
Indices: 24439409--24439434 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
24439399 TGCAATGCAT
24439409 AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
24439435 TATTTACCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:24443891 original size:18 final size:20
Alignment explanation
Indices: 24443851--24443937 Score: 60
Period size: 18 Copynumber: 4.5 Consensus size: 20
24443841 ATATGGTACA
* *
24443851 ATAATAATATTAATAATACT
1 ATAATAATATTAACAATAAT
24443871 ATAATAAT-TT-ACAATAAT
1 ATAATAATATTAACAATAAT
*
24443889 ATACCATAATATT----ATATT
1 ATA--ATAATATTAACAATAAT
*
24443907 ATAATATATATTAACAAAAAT
1 ATAATA-ATATTAACAATAAT
24443928 ATTAATAATA
1 A-TAATAATA
24443938 AAAGAAATTG
Statistics
Matches: 53, Mismatches: 5, Indels: 17
0.71 0.07 0.23
Matches are distributed among these distances:
16 3 0.06
17 5 0.09
18 16 0.30
19 2 0.04
20 13 0.25
21 9 0.17
22 5 0.09
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (20 bp):
ATAATAATATTAACAATAAT
Found at i:24444579 original size:15 final size:16
Alignment explanation
Indices: 24444559--24444588 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
24444549 AGAAATAGGC
24444559 AAAGAAGG-AAAGAAG
1 AAAGAAGGTAAAGAAG
24444574 AAAGAAGGTAAAGAA
1 AAAGAAGGTAAAGAA
24444589 TATCGGACGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.03
Consensus pattern (16 bp):
AAAGAAGGTAAAGAAG
Found at i:24445008 original size:29 final size:29
Alignment explanation
Indices: 24444956--24445014 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
24444946 TATCTCAACA
* *
24444956 TTTTTTATTTTTTAATAATAATAAATAAC
1 TTTTTTATTTGTAAATAATAATAAATAAC
* * *
24444985 TTTTTTATTTGTAAATTATCATAAGTAAC
1 TTTTTTATTTGTAAATAATAATAAATAAC
24445014 T
1 T
24445015 ATTTAAATAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.54
Consensus pattern (29 bp):
TTTTTTATTTGTAAATAATAATAAATAAC
Found at i:24447613 original size:13 final size:12
Alignment explanation
Indices: 24447584--24447614 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
24447574 AGAAATACAT
24447584 GAAAAATTGAAG
1 GAAAAATTGAAG
24447596 GAAAAATTGAAG
1 GAAAAATTGAAG
24447608 GAAAAAT
1 GAAAAAT
24447615 CGAAACATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.23, T:0.16
Consensus pattern (12 bp):
GAAAAATTGAAG
Found at i:24454267 original size:13 final size:13
Alignment explanation
Indices: 24454249--24454282 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
24454239 TTTATTAGCT
24454249 TTTCTTTTCTTTC
1 TTTCTTTTCTTTC
*
24454262 TTTCTTTTTTTTC
1 TTTCTTTTCTTTC
*
24454275 TTTATTTT
1 TTTCTTTT
24454283 TCTTGCTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTCTTTTCTTTC
Found at i:24455097 original size:22 final size:23
Alignment explanation
Indices: 24455067--24455119 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
24455057 TAAGATGATC
* *
24455067 ATATAATTTTTTATCATTATAA-
1 ATATTATTTATTATCATTATAAT
*
24455089 ATGTTATTTATTATCATTATAAT
1 ATATTATTTATTATCATTATAAT
24455112 ATATTATT
1 ATATTATT
24455120 ATATATTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 19 0.73
23 7 0.27
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (23 bp):
ATATTATTTATTATCATTATAAT
Found at i:24455401 original size:20 final size:18
Alignment explanation
Indices: 24455378--24455416 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
24455368 TTTAATATGC
24455378 ATTTAACATATATTATATAT
1 ATTTAA-AT-TATTATATAT
*
24455398 ATTTAAATTTTTATATAT
1 ATTTAAATTATTATATAT
24455416 A
1 A
24455417 AATTACTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 2 0.11
20 6 0.33
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTTAAATTATTATATAT
Found at i:24455555 original size:18 final size:18
Alignment explanation
Indices: 24455525--24455563 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
24455515 TGATGTATTC
*
24455525 TATTAATATTATTATTTA
1 TATTAATATTATTATTAA
24455543 TATT-ATATATATTATTAA
1 TATTAATAT-TATTATTAA
24455561 TAT
1 TAT
24455564 AAAAAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTAATATTATTATTAA
Found at i:24455796 original size:17 final size:18
Alignment explanation
Indices: 24455762--24455803 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
24455752 CACTTATTAA
* *
24455762 ATTTTTTTTATATAATAT
1 ATTTTATTTAAATAATAT
24455780 ATTTTATTTAAAT-ATAT
1 ATTTTATTTAAATAATAT
*
24455797 TTTTTAT
1 ATTTTAT
24455804 ATTTTATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTATTTAAATAATAT
Found at i:24455818 original size:30 final size:30
Alignment explanation
Indices: 24455758--24455826 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 30
24455748 ATGTCACTTA
24455758 TTAAAT-T-TTTTTTATATAATATATTTTAT
1 TTAAATATATTTTTTATAT-ATATATTTTAT
*
24455787 TTAAATATATTTTTTATAT-TTTATTTGTAT
1 TTAAATATATTTTTTATATATATATTT-TAT
*
24455817 TTAAACATAT
1 TTAAATATAT
24455827 CAACGTATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 12 0.34
30 13 0.37
31 10 0.29
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (30 bp):
TTAAATATATTTTTTATATATATATTTTAT
Found at i:24466529 original size:64 final size:62
Alignment explanation
Indices: 24466461--24466580 Score: 159
Period size: 64 Copynumber: 1.9 Consensus size: 62
24466451 GTTTGGTATG
* * * * * *
24466461 AAAAACGCCTTATATAATCTTGTTCAATTTTTTTGGTGGATTATTTAAGGTATTTTTTATAGCA
1 AAAAACACCTTAAATAATCTTATGCAA-TTTTTT-GAGGATTATTTAAGGTAATTTTTATAGCA
*
24466525 AAAAATACCTTAAATAATCTTATGCAATTTTTTGAGGATTATTTAAGGTAATTTTT
1 AAAAACACCTTAAATAATCTTATGCAATTTTTTGAGGATTATTTAAGGTAATTTTT
24466581 GCTAGAAAAC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
62 21 0.43
63 6 0.12
64 22 0.45
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.46
Consensus pattern (62 bp):
AAAAACACCTTAAATAATCTTATGCAATTTTTTGAGGATTATTTAAGGTAATTTTTATAGCA
Found at i:24466702 original size:61 final size:61
Alignment explanation
Indices: 24466592--24466736 Score: 159
Period size: 61 Copynumber: 2.4 Consensus size: 61
24466582 CTAGAAAACC
* * * ** * *
24466592 CCTTAAATAATCCTTTATAAAAAATTGAATTGGATTATTTTAGTTATTTTCTAGCAAAAAATG
1 CCTTAAATAAT-C-TCATAAAAAATTGAATTGCATTATTTAAGGCATTTTCTAACAAAAAATA
* *
24466655 CCTTAAATAATCTCATAAAAAATTG-ATTAGCATTATTTAAGGCATTTTCTAACCAGAAATA
1 CCTTAAATAATCTCATAAAAAATTGAATT-GCATTATTTAAGGCATTTTCTAACAAAAAATA
*
24466716 CCTTAAATAATC-CAAAAAAAA
1 CCTTAAATAATCTCATAAAAAA
24466737 AAAAAAAAAG
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
60 11 0.15
61 48 0.68
62 1 0.01
63 11 0.15
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35
Consensus pattern (61 bp):
CCTTAAATAATCTCATAAAAAATTGAATTGCATTATTTAAGGCATTTTCTAACAAAAAATA
Found at i:24467230 original size:62 final size:62
Alignment explanation
Indices: 24467151--24467380 Score: 230
Period size: 63 Copynumber: 3.7 Consensus size: 62
24467141 ATTGAAGGGT
* * *
24467151 ATTATTTAAGGCATTTTTAACCAAAAATGCTTTAAATAATCCCTTGATACATTTTAAAGGAG
1 ATTATTTAAGGCATTTTTAACAAAAAATGCCTTAAATAATCCCTTAATACATTTTAAAGGAG
* * * ** * * **
24467213 ATTATTTAAGGTATTTTTGGATAAAAAACACCTTAAATAATCTCTTTATATTTTTTAAAGG-G
1 ATTATTTAAGGCATTTTT-AACAAAAAATGCCTTAAATAATCCCTTAATACATTTTAAAGGAG
* * * * * *
24467275 CATTATTTAAGACGTTTTTGGACAAAATATGCCTTAAATAATTCCC-TAATACATTTTAAAAGAT
1 -ATTATTTAAGGCATTTTT-AACAAAAAATGCCTTAAATAA-TCCCTTAATACATTTTAAAGGAG
*
24467339 ATTATTTAAGGCATTTTTTAACAAAAAATGACTTAAATAATC
1 ATTATTTAAGGCA-TTTTTAACAAAAAATGCCTTAAATAATC
24467381 TCTTTTAAAA
Statistics
Matches: 134, Mismatches: 29, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
62 20 0.15
63 106 0.79
64 8 0.06
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.39
Consensus pattern (62 bp):
ATTATTTAAGGCATTTTTAACAAAAAATGCCTTAAATAATCCCTTAATACATTTTAAAGGAG
Found at i:24467343 original size:126 final size:125
Alignment explanation
Indices: 24467145--24467385 Score: 308
Period size: 126 Copynumber: 1.9 Consensus size: 125
24467135 CCAAAAATTG
* * * * *
24467145 AAGGGTATTATTTAAGGCATTTTTAACCAAAAATGCTTTAAATAATCCCTTGATACATTTTAAAG
1 AAGGGCATTATTTAAGACATTTTTAACCAAAAATGCCTTAAATAATCCCTTAATACATTTTAAAA
* * *
24467210 GAGATTATTTAAGGTATTTTTGGATAAAAAA-CACCTTAAATAATCTCTTTATATTTTTTA
66 GAGATTATTTAAGGCATTTTTGAACAAAAAATCA-CTTAAATAATCTCTTTATATTTTTTA
* *
24467270 AAGGGCATTATTTAAGACGTTTTTGGA-CAAAATATGCCTTAAATAATTCCC-TAATACATTTTA
1 AAGGGCATTATTTAAGACATTTTT-AACCAAAA-ATGCCTTAAATAA-TCCCTTAATACATTTTA
* * *
24467333 AAAGATATTATTTAAGGCATTTTTTAACAAAAAATGACTTAAATAATCTCTTT
63 AAAGAGATTATTTAAGGCATTTTTGAACAAAAAATCACTTAAATAATCTCTTT
24467386 TAAAAAAATA
Statistics
Matches: 99, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
125 26 0.26
126 68 0.69
127 5 0.05
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (125 bp):
AAGGGCATTATTTAAGACATTTTTAACCAAAAATGCCTTAAATAATCCCTTAATACATTTTAAAA
GAGATTATTTAAGGCATTTTTGAACAAAAAATCACTTAAATAATCTCTTTATATTTTTTA
Found at i:24467406 original size:126 final size:125
Alignment explanation
Indices: 24467172--24467416 Score: 289
Period size: 126 Copynumber: 2.0 Consensus size: 125
24467162 CATTTTTAAC
* * * * * *
24467172 CAAAAATGCTTTAAATAATCCCTTGATACATTTTAAAGGAGATTATTTAAGGTATTTTTGGATAA
1 CAAAAATGCCTTAAATAATCCCTTAATACATTTTAAAAGAGATTATTTAAGGCATTTTTGAACAA
* **** * *
24467237 AAAACACCTTAAATAATCTCTTTATATTTTTTAAAGGGCATTATTTAAGACGTTTTTGGA
66 AAAACACCTTAAATAATCTCTTTAAAAAAATAAAAGAGCATTATTTAAGACGTTTTTGGA
* *
24467297 CAAAATATGCCTTAAATAATTCCC-TAATACATTTTAAAAGATATTATTTAAGGCATTTTTTAAC
1 CAAAA-ATGCCTTAAATAA-TCCCTTAATACATTTTAAAAGAGATTATTTAAGGCATTTTTGAAC
*
24467361 AAAAAATGA-CTTAAATAATCTCTTTTAAAAAAATAAAAGAG-ATTATTTAAGACGTT
64 AAAAAA-CACCTTAAATAATCTC-TTTAAAAAAATAAAAGAGCATTATTTAAGACGTT
24467417 CTTAAATAAT
Statistics
Matches: 100, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
125 5 0.05
126 79 0.79
127 16 0.16
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (125 bp):
CAAAAATGCCTTAAATAATCCCTTAATACATTTTAAAAGAGATTATTTAAGGCATTTTTGAACAA
AAAACACCTTAAATAATCTCTTTAAAAAAATAAAAGAGCATTATTTAAGACGTTTTTGGA
Found at i:24472739 original size:28 final size:28
Alignment explanation
Indices: 24472676--24472750 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
24472666 TCAGCATATG
* * *
24472676 ATTCAGCATACCAATATCATACAATACC
1 ATTCAGCAAAACAATATCATACAATAAC
* *
24472704 ATTAAGCAAAACAATATCATACAATAAG
1 ATTCAGCAAAACAATATCATACAATAAC
*
24472732 GTTCAGCAAATCACAATAT
1 ATTCAGCAAA--ACAATAT
24472751 TTAAAAAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 31 0.82
30 7 0.18
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (28 bp):
ATTCAGCAAAACAATATCATACAATAAC
Found at i:24473878 original size:186 final size:184
Alignment explanation
Indices: 24473428--24474085 Score: 784
Period size: 185 Copynumber: 3.5 Consensus size: 184
24473418 AACGAGTTAG
* *
24473428 TAAAGGCATTTTTCTAGAATAAACACCTTCACTAACCATCTTAAAATTTGAGTACTGAAATATTG
1 TAAAGGTATTTTTCTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGTACTGAAATATTG
* ** * **
24473493 AAGGCATTTTTCACTAAAAGACACCTTTAATAATCCCAAATATTTTTAAAAGGAAATTATTGAAT
66 AAGGC-TTTTTCACTAGAAGATGCCTTTAATAAT-CCAAAAATTTTTAAAAAAAAATTATT-AA-
* * * **
24473558 A-G-GTTTGTTCTCAAAAAATGCCTTTAATAATTATGTACATAAATTAAATGGAATTGG
127 AGGCGTTTGTTCT-AAAAAATGCCTTCAATAATTATGTACATAAATTAAAAGAAATTAT
* * * *** *
24473615 TGAAGGTGTTTTTCTATAATAAACGCCTTCACTAATTGTCTTAAAATTTGAGTAGTGAAATATTG
1 TAAAGGTATTTTTCTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGTACTGAAATATTG
* *
24473680 AAGGCATTTTCACTGGAAGATGCCTTTAATAATCTCAAAAATTTTTAAAAAAAAATTATTAAAGG
66 AAGGCTTTTTCACTAGAAGATGCCTTTAATAATC-CAAAAATTTTTAAAAAAAAATTATTAAAGG
*
24473745 CGTTTGTTCTAAAAAATGCCTTCAATAATTATGTACA-AAATTTAAAAAAAATTAT
130 CGTTTGTTCTAAAAAATGCCTTCAATAATTATGTACATAAA-TTAAAAGAAATTAT
* * * * **
24473800 TAAAGGTATTTTTTTGGAATAAATGCCTTCACTAACCATCTTAAAATTTAAGTACTGGTATATTG
1 TAAAGGTATTTTTCTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGTACTGAAATATTG
* * *
24473865 AAGTCGTTTTTCACTAGAAGATGCATTTAATAATCCTAAAATTTTTAAAAAAAAACTTATTAAAG
66 AAGGC-TTTTTCACTAGAAGATGCCTTTAATAATCCAAAAATTTTTAAAAAAAAA-TTATTAAAG
* *
24473930 GCGTTTATTCTTAAAAAATGCCTTCAATAATTATGTACATAAATTAACAGAAATTAAT
129 GCGTTTGTTC-TAAAAAATGCCTTCAATAATTATGTACATAAATTAAAAGAAATT-AT
* ** * * * *
24473988 TAAAGGTATTTTTCTAGAATAAATGCCTTCACTAACTGTCTTAAAATTTGAATAGTAAAATATTA
1 TAAAGGTATTTTTCTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGTACTGAAATATTG
* *
24474053 AAGG-TGTTTTGCATTAGAAGATGCCTTCAATAA
66 AAGGCT-TTTT-CACTAGAAGATGCCTTTAATAA
24474086 ATTTTTTCAA
Statistics
Matches: 401, Mismatches: 59, Indels: 21
0.83 0.12 0.04
Matches are distributed among these distances:
184 4 0.01
185 114 0.28
186 99 0.25
187 103 0.26
188 81 0.20
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (184 bp):
TAAAGGTATTTTTCTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGTACTGAAATATTG
AAGGCTTTTTCACTAGAAGATGCCTTTAATAATCCAAAAATTTTTAAAAAAAAATTATTAAAGGC
GTTTGTTCTAAAAAATGCCTTCAATAATTATGTACATAAATTAAAAGAAATTAT
Done.