Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 153 of 190
Found at i:24712129 original size:14 final size:13
Alignment explanation
Indices: 24712097--24712137 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
24712087 TTTACTTTTA
24712097 TATAATTTTTATT
1 TATAATTTTTATT
*
24712110 TTTAATTTTTATAT
1 TATAATTTTTAT-T
24712124 TATAATTTTTATT
1 TATAATTTTTATT
24712137 T
1 T
24712138 TTTATATACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TATAATTTTTATT
Found at i:24712133 original size:21 final size:21
Alignment explanation
Indices: 24712082--24712144 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
24712072 TTATTAAACT
* *
24712082 TAATTTTTACTTTTATATAATTT
1 TAATTTTTAATTTT-TAT-ATTA
*
24712105 TTATTTTTAATTTTTATATTA
1 TAATTTTTAATTTTTATATTA
*
24712126 TAATTTTTATTTTTTATAT
1 TAATTTTTAATTTTTATAT
24712145 ACATGCGAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 20 0.57
22 3 0.09
23 12 0.34
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.70
Consensus pattern (21 bp):
TAATTTTTAATTTTTATATTA
Found at i:24713305 original size:10 final size:10
Alignment explanation
Indices: 24713290--24713331 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
24713280 AGCACATTTG
24713290 CATAAAAAAA
1 CATAAAAAAA
24713300 CATAAAAAAA
1 CATAAAAAAA
*
24713310 CA-AACAATAA
1 CATAA-AAAAA
24713320 CAATAAAAAAA
1 C-ATAAAAAAA
24713331 C
1 C
24713332 CATAGTAGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 2 0.07
10 17 0.63
11 6 0.22
12 2 0.07
ACGTcount: A:0.76, C:0.14, G:0.00, T:0.10
Consensus pattern (10 bp):
CATAAAAAAA
Found at i:24720059 original size:23 final size:23
Alignment explanation
Indices: 24720032--24720080 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
24720022 TTAACAGCCA
24720032 TAAAACTTGGTTACAAAAAATCT
1 TAAAACTTGGTTACAAAAAATCT
*
24720055 TAAAACTTGGTTACAAAAAGTCT
1 TAAAACTTGGTTACAAAAAATCT
24720078 TAA
1 TAA
24720081 GTAATAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (23 bp):
TAAAACTTGGTTACAAAAAATCT
Found at i:24725205 original size:103 final size:101
Alignment explanation
Indices: 24725080--24725416 Score: 391
Period size: 103 Copynumber: 3.3 Consensus size: 101
24725070 TTATTTTAAG
* *
24725080 AAAATTCATTAAATCTTTCAATAGTTT-AGTAAGATCTAATTCAATATTTAAATCCTCCAATAGT
1 AAAATTCATTAAGTCTTCCAATAGTTTGA-TAAGA-CTAATTCAATATTTAAATCCTCCAATAGT
*
24725144 TTGATTGGATTTAAAATTTTAGTATTATTTTTTTTACAA
64 TTGATAGGATTTAAAATTTTAGTATTATTTTTTTT-CAA
* *
24725183 AAAATTCATTAAGTCTTCCAATATTTTGATAAAACCTAATTCAATATTTAAATCCTCCAATAGTT
1 AAAATTCATTAAGTCTTCCAATAGTTTGATAAGA-CTAATTCAATATTTAAATCCTCCAATAGTT
* * *
24725248 TGATAGGA-TTAAAATTTTTGTTATTATTATTTCT-AA
65 TGATAGGATTTAAAATTTTAG-TATTATTTTTTTTCAA
* * * *
24725284 AAAATTCATTAAGTCCTCCAATAGTTTGATAAGACTTAATTCAATATTTAAATCTTTCAATAATT
1 AAAATTCATTAAGTCTTCCAATAGTTTGATAAGAC-TAATTCAATATTTAAATCCTCCAATAGTT
* *
24725349 T-AGTAGGATTGAATATTTTA-TATTA--TTTTTTCAA
65 TGA-TAGGATTTAAAATTTTAGTATTATTTTTTTTCAA
* *
24725383 AAAATTCATTATGTAATTCTCATATAGTTTGATA
1 AAAATTCATTAAGT-CTTC-CA-ATAGTTTGATA
24725417 GAATTCATAA
Statistics
Matches: 202, Mismatches: 23, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
98 4 0.02
99 15 0.07
100 9 0.04
101 67 0.33
102 30 0.15
103 76 0.38
104 1 0.00
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (101 bp):
AAAATTCATTAAGTCTTCCAATAGTTTGATAAGACTAATTCAATATTTAAATCCTCCAATAGTTT
GATAGGATTTAAAATTTTAGTATTATTTTTTTTCAA
Found at i:24725333 original size:101 final size:100
Alignment explanation
Indices: 24725070--24725416 Score: 382
Period size: 101 Copynumber: 3.4 Consensus size: 100
24725060 AGTATGAAAT
* *
24725070 TTATTT-TAAGAAAATTCATTAAATCTTTCAATAGTTT-AGTAAGA-TCTAATTCAATATTTAAA
1 TTATTTCTAA-AAAATTCATTAAGTCTTCCAATAGTTTGA-TAAGACT-TAATTCAATATTTAAA
* *
24725132 TCCTCCAATAGTTTGATTGGATTTAAAATTTTAGTATTA
63 TCCTCCAATAGTTTGATAGGA-TTAAAATTTTTGTATTA
* * * * *
24725171 TTTTTTTTACAAAAAATTCATTAAGTCTTCCAATATTTTGATAAAACCTAATTCAATATTTAAAT
1 TTATTTCT--AAAAAATTCATTAAGTCTTCCAATAGTTTGATAAGACTTAATTCAATATTTAAAT
24725236 CCTCCAATAGTTTGATAGGATTAAAATTTTTGTTATTA
64 CCTCCAATAGTTTGATAGGATTAAAATTTTTG-TATTA
* *
24725274 TTATTTCTAAAAAATTCATTAAGTCCTCCAATAGTTTGATAAGACTTAATTCAATATTTAAATCT
1 TTATTTCTAAAAAATTCATTAAGTCTTCCAATAGTTTGATAAGACTTAATTCAATATTTAAATCC
* * * *
24725339 TTCAATAATTT-AGTAGGATT-GAATATTTTATATTA
66 TCCAATAGTTTGA-TAGGATTAAAAT-TTTTGTATTA
* * *
24725374 TTTTTTC-AAAAAATTCATTATGTAATTCTCATATAGTTTGATA
1 TTATTTCTAAAAAATTCATTAAGT-CTTC-CA-ATAGTTTGATA
24725417 GAATTCATAA
Statistics
Matches: 212, Mismatches: 23, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
99 15 0.07
100 17 0.08
101 79 0.37
102 23 0.11
103 75 0.35
104 3 0.01
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (100 bp):
TTATTTCTAAAAAATTCATTAAGTCTTCCAATAGTTTGATAAGACTTAATTCAATATTTAAATCC
TCCAATAGTTTGATAGGATTAAAATTTTTGTATTA
Found at i:24726100 original size:27 final size:26
Alignment explanation
Indices: 24726069--24726137 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 26
24726059 TTTTAAAACC
*
24726069 AGATAAATAAAAGATTAAAACATAATA
1 AGATAAATAAAAGAATAAAACA-AATA
*
24726096 AGATAAATAAATA-AATAAGACAAATA
1 AGATAAATAAA-AGAATAAAACAAATA
*
24726122 AGATATAAAAAAAGAA
1 AGATA-AATAAAAGAA
24726138 ATATAGGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
26 10 0.28
27 25 0.69
28 1 0.03
ACGTcount: A:0.70, C:0.03, G:0.09, T:0.19
Consensus pattern (26 bp):
AGATAAATAAAAGAATAAAACAAATA
Found at i:24726120 original size:9 final size:9
Alignment explanation
Indices: 24726092--24726126 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
24726082 ATTAAAACAT
24726092 AATAAGATA
1 AATAAGATA
24726101 AATAA-ATA
1 AATAAGATA
*
24726109 AATAAGACA
1 AATAAGATA
24726118 AATAAGATA
1 AATAAGATA
24726127 TAAAAAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.69, C:0.03, G:0.09, T:0.20
Consensus pattern (9 bp):
AATAAGATA
Found at i:24728267 original size:19 final size:19
Alignment explanation
Indices: 24728248--24728285 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
24728238 AAAAGTGAAA
*
24728248 GAAAAAATATTAAAAAAAAG
1 GAAAAAA-ATGAAAAAAAAG
24728268 GAAAAAAATGAAAAAAAA
1 GAAAAAAATGAAAAAAAA
24728286 ATTGATAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (19 bp):
GAAAAAAATGAAAAAAAAG
Found at i:24728593 original size:18 final size:17
Alignment explanation
Indices: 24728570--24728625 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 17
24728560 ATGTGTAGAA
24728570 AAAAATGAAAGAAAAATG
1 AAAAATGAAA-AAAAATG
24728588 AAAAATG-AAAAAAATG
1 AAAAATGAAAAAAAATG
24728604 AGGAAAATGAGAAAAAAATG
1 A--AAAATGA-AAAAAAATG
24728624 AA
1 AA
24728626 GACTTAAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
16 8 0.24
17 2 0.06
18 14 0.41
20 10 0.29
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.11
Consensus pattern (17 bp):
AAAAATGAAAAAAAATG
Found at i:24728602 original size:9 final size:9
Alignment explanation
Indices: 24728567--24728625 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
24728557 ATGATGTGTA
24728567 GAAAAAAAT
1 GAAAAAAAT
24728576 GAAAGAAAAAT
1 G-AA-AAAAAT
24728587 G--AAAAAT
1 GAAAAAAAT
24728594 GAAAAAAAT
1 GAAAAAAAT
**
24728603 GAGGAAAAT
1 GAAAAAAAT
24728612 GAGAAAAAAAT
1 --GAAAAAAAT
24728623 GAA
1 GAA
24728626 GACTTAAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
7 7 0.17
9 17 0.43
10 2 0.05
11 14 0.35
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (9 bp):
GAAAAAAAT
Found at i:24729773 original size:46 final size:47
Alignment explanation
Indices: 24729679--24729972 Score: 201
Period size: 44 Copynumber: 6.6 Consensus size: 47
24729669 AATAAGAATC
* * * * * *
24729679 TCAAATG-CGAATCTTT-AAATGTTATATGTGAATTTTTAA-AATTT
1 TCAAATGTAGAATCTTTGAAATTTTAGATGTGAATCTCTAAGATTTT
*
24729723 TCAAATGTA-AATCTTTGAAATTTTAGATGT-AAGTCCCTAAGATTTT
1 TCAAATGTAGAATCTTTGAAATTTTAGATGTGAA-TCTCTAAGATTTT
* * *
24729769 TCAAATG-AGAGTTTTTG-AATTTTAGAT-TGAATCTCTAAAATTTT
1 TCAAATGTAGAATCTTTGAAATTTTAGATGTGAATCTCTAAGATTTT
* * * * *
24729813 TCAAAT-AAGAATCCTAGAATTTTTTGATGTGAATCTCTAAGA-TTT
1 TCAAATGTAGAATCTTTGAAATTTTAGATGTGAATCTCTAAGATTTT
* * * * *
24729858 TCAAATGTA-AA-CTTTTG-AATCTTGGATATGGATCTCTATGA-TTT
1 TCAAATGTAGAATC-TTTGAAATTTTAGATGTGAATCTCTAAGATTTT
* * * *
24729902 TCGAATGT-GAATATTTGAAAGTTTAGATGTGAATCTC-AAAATTTATT
1 TCAAATGTAGAATCTTTGAAATTTTAGATGTGAATCTCTAAGA-TT-TT
*
24729949 TCAAATGTA-AATATTTG-AATTTTA
1 TCAAATGTAGAATCTTTGAAATTTTA
24729973 AAAGCTTTAT
Statistics
Matches: 194, Mismatches: 38, Indels: 34
0.73 0.14 0.13
Matches are distributed among these distances:
44 77 0.40
45 63 0.32
46 37 0.19
47 17 0.09
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.43
Consensus pattern (47 bp):
TCAAATGTAGAATCTTTGAAATTTTAGATGTGAATCTCTAAGATTTT
Found at i:24729833 original size:44 final size:44
Alignment explanation
Indices: 24729741--24729863 Score: 124
Period size: 45 Copynumber: 2.8 Consensus size: 44
24729731 AAATCTTTGA
* * * ** *
24729741 AATTTTAGA-TGTAAGTCCCTAAGATTTTTCAAATGAGAGTTTTTG
1 AATTTTAGATTG-AA-TCTCTAAGATTTTTCAAATAAGAATCCTAG
*
24729786 AATTTTAGATTGAATCTCTAAAATTTTTCAAATAAGAATCCTAG
1 AATTTTAGATTGAATCTCTAAGATTTTTCAAATAAGAATCCTAG
*
24729830 AATTTTTTGATGTGAATCTCTAAGA-TTTTCAAAT
1 AA-TTTTAGAT-TGAATCTCTAAGATTTTTCAAAT
24729864 GTAAACTTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
44 25 0.38
45 27 0.41
46 14 0.21
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (44 bp):
AATTTTAGATTGAATCTCTAAGATTTTTCAAATAAGAATCCTAG
Found at i:24729865 original size:23 final size:23
Alignment explanation
Indices: 24729796--24729865 Score: 54
Period size: 23 Copynumber: 3.0 Consensus size: 23
24729786 AATTTTAGAT
* *
24729796 TGAATCTCTAAAATTTTTCAAATA
1 TGAATCTCTAAGA-TTTTCAAATG
* ***
24729820 AGAATC-CT-AGAATTTTTTGATG
1 TGAATCTCTAAG-ATTTTCAAATG
24729842 TGAATCTCTAAGATTTTCAAATG
1 TGAATCTCTAAGATTTTCAAATG
24729865 T
1 T
24729866 AAACTTTTGA
Statistics
Matches: 33, Mismatches: 10, Indels: 7
0.66 0.20 0.14
Matches are distributed among these distances:
22 12 0.36
23 14 0.42
24 7 0.21
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.41
Consensus pattern (23 bp):
TGAATCTCTAAGATTTTCAAATG
Found at i:24730169 original size:18 final size:18
Alignment explanation
Indices: 24730106--24730172 Score: 71
Period size: 18 Copynumber: 3.6 Consensus size: 18
24730096 GTTTGAGAAC
* *
24730106 CTTGAATTTTTTGCAAAA
1 CTTGAATCTTTTGCAAAT
* *
24730124 CTTTAATTTTTTTTGCAAAT
1 CTTGAA--TCTTTTGCAAAT
24730144 CATTGAATCTTTTGCAAAT
1 C-TTGAATCTTTTGCAAAT
24730163 CTTGAATCTT
1 CTTGAATCTT
24730173 GCGAATCTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
18 14 0.33
19 12 0.29
20 12 0.29
21 4 0.10
ACGTcount: A:0.28, C:0.13, G:0.09, T:0.49
Consensus pattern (18 bp):
CTTGAATCTTTTGCAAAT
Found at i:24730190 original size:18 final size:18
Alignment explanation
Indices: 24730136--24730222 Score: 83
Period size: 18 Copynumber: 4.9 Consensus size: 18
24730126 TTAATTTTTT
*
24730136 TTGCAAATCATTG-AATC
1 TTGCAAATCTTTGAAATC
24730153 TTTTGCAAATC-TTG-AATC
1 --TTGCAAATCTTTGAAATC
* **
24730171 TTGCGAATCTTTGACTTC
1 TTGCAAATCTTTGAAATC
*
24730189 TTGCAAATATTTGAAATC
1 TTGCAAATCTTTGAAATC
24730207 TTGCAAATCTTT-AAAT
1 TTGCAAATCTTTGAAAT
24730223 TTAATTATGA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
16 8 0.14
17 7 0.12
18 34 0.59
19 9 0.16
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.41
Consensus pattern (18 bp):
TTGCAAATCTTTGAAATC
Found at i:24730255 original size:22 final size:22
Alignment explanation
Indices: 24730225--24730269 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
24730215 CTTTAAATTT
24730225 AATTATGAATCC-TTGAATTTCA
1 AATTATGAA-CCATTGAATTTCA
*
24730247 AATTGTGAACCATTGAATTTCA
1 AATTATGAACCATTGAATTTCA
24730269 A
1 A
24730270 GTTGGGAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (22 bp):
AATTATGAACCATTGAATTTCA
Found at i:24730285 original size:22 final size:22
Alignment explanation
Indices: 24730237--24730278 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
24730227 TTATGAATCC
*
24730237 TTGAATTTCAAATTGTGAACCA
1 TTGAATTTCAAATTGGGAACCA
*
24730259 TTGAATTTCAAGTTGGGAAC
1 TTGAATTTCAAATTGGGAAC
24730279 TTTTGAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (22 bp):
TTGAATTTCAAATTGGGAACCA
Found at i:24731152 original size:28 final size:24
Alignment explanation
Indices: 24731095--24731201 Score: 80
Period size: 24 Copynumber: 4.5 Consensus size: 24
24731085 AGGATTTTTA
*
24731095 TTATTATATTTATTTGTATGATTT
1 TTATTATATTTATTTGCATGATTT
*
24731119 TTATTATGTTTATTTGCATGGCATTT
1 TTATTATATTTATTTGCAT-G-ATTT
* *
24731145 TTGCA-T-TA-TTACTTGCATCATTT
1 TT--ATTATATTTATTTGCATGATTT
*
24731168 TTATTAT-TTT-TTTGCATGGTTT
1 TTATTATATTTATTTGCATGATTT
*
24731190 ATTATGATATTT
1 -TTATTATATTT
24731202 TTACATGATA
Statistics
Matches: 65, Mismatches: 9, Indels: 18
0.71 0.10 0.20
Matches are distributed among these distances:
21 1 0.02
22 10 0.15
23 15 0.23
24 20 0.31
25 10 0.15
26 7 0.11
27 1 0.02
28 1 0.02
ACGTcount: A:0.21, C:0.07, G:0.11, T:0.61
Consensus pattern (24 bp):
TTATTATATTTATTTGCATGATTT
Found at i:24731254 original size:27 final size:27
Alignment explanation
Indices: 24731224--24731282 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
24731214 TTGTATGGAG
*
24731224 TTTATTTATTTGCAT-TATTAATTATGA
1 TTTATTT-TTTGCATGTATTAAATATGA
*
24731251 TTTA-TTTTTGCATGTTTTAAATATGA
1 TTTATTTTTTGCATGTATTAAATATGA
24731277 TATTAT
1 T-TTAT
24731283 AGCATGGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 7 0.26
26 13 0.48
27 7 0.26
ACGTcount: A:0.29, C:0.03, G:0.08, T:0.59
Consensus pattern (27 bp):
TTTATTTTTTGCATGTATTAAATATGA
Found at i:24734043 original size:2 final size:2
Alignment explanation
Indices: 24734036--24734060 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24734026 TGACAGTGAA
24734036 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
24734061 ATGCATTCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:24737775 original size:2 final size:2
Alignment explanation
Indices: 24737770--24737795 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
24737760 ACACACACAC
24737770 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
24737796 GATGGAGGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24748308 original size:16 final size:14
Alignment explanation
Indices: 24748273--24748305 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
24748263 TATTAATAAA
24748273 TAAAATTAATTTTT
1 TAAAATTAATTTTT
24748287 TAAAATTAATTTTT
1 TAAAATTAATTTTT
24748301 TAAAA
1 TAAAA
24748306 AATAAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TAAAATTAATTTTT
Found at i:24750859 original size:34 final size:34
Alignment explanation
Indices: 24750812--24750894 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 34
24750802 TTTATAACTT
* * * *
24750812 TCAAAAATGCATTTTTAATAAGTCATAATATTTC
1 TCAAAAATACATTTTAAAAAAATCATAATATTTC
* *
24750846 TTAGAAATACATTTTAAAAAAATCATAATATTTC
1 TCAAAAATACATTTTAAAAAAATCATAATATTTC
*
24750880 TCAAAAATAAATTTT
1 TCAAAAATACATTTT
24750895 CACTCCTAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.47, C:0.10, G:0.04, T:0.40
Consensus pattern (34 bp):
TCAAAAATACATTTTAAAAAAATCATAATATTTC
Found at i:24751467 original size:13 final size:13
Alignment explanation
Indices: 24751449--24751503 Score: 55
Period size: 15 Copynumber: 4.4 Consensus size: 13
24751439 ATTTTATGAT
24751449 TTTTTAATAATAA
1 TTTTTAATAATAA
24751462 TTTTTATTATAATAA
1 TTTTTA--ATAATAA
*
24751477 TTTAT-A-AATAA
1 TTTTTAATAATAA
24751488 -TTTTAATAA-AA
1 TTTTTAATAATAA
24751499 TTTTT
1 TTTTT
24751504 TTAATTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
10 3 0.09
11 8 0.23
12 7 0.20
13 6 0.17
15 11 0.31
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTTAATAATAA
Found at i:24753338 original size:28 final size:28
Alignment explanation
Indices: 24753278--24753339 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 28
24753268 AGTGTCAATA
*
24753278 AAATTTATTATAAATAATTATTTTAATT
1 AAATTTTTTATAAATAATTATTTTAATT
*
24753306 -TATTTTTTATATAATAA-T-TTTTATATT
1 AAATTTTTTATA-AATAATTATTTTA-ATT
24753333 AAATTTT
1 AAATTTT
24753340 ATTAATTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
26 5 0.18
27 13 0.46
28 10 0.36
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (28 bp):
AAATTTTTTATAAATAATTATTTTAATT
Found at i:24756358 original size:2 final size:2
Alignment explanation
Indices: 24756351--24756377 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24756341 AAAATGTAAA
24756351 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
24756378 ATCTAATGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24767168 original size:18 final size:18
Alignment explanation
Indices: 24767145--24767180 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
24767135 ACAATCCCTC
24767145 GTACGTTTGGAGGAGTAT
1 GTACGTTTGGAGGAGTAT
24767163 GTACGTTTGGAGGAGTAT
1 GTACGTTTGGAGGAGTAT
24767181 ATGCATAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.39, T:0.33
Consensus pattern (18 bp):
GTACGTTTGGAGGAGTAT
Found at i:24773681 original size:29 final size:29
Alignment explanation
Indices: 24773639--24773709 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
24773629 TTCATTTTTA
**
24773639 AAAT-AATTTTTATATTTTTATTT-TATTC
1 AAATAAATTTTTATATTTCAATTTGTA-TC
24773667 AAATAAATTTTTATATTTCAATTTGTATC
1 AAATAAATTTTTATATTTCAATTTGTATC
*
24773696 AAATAAATTCTTAT
1 AAATAAATTTTTAT
24773710 TTCGAATGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.11
29 32 0.84
30 2 0.05
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (29 bp):
AAATAAATTTTTATATTTCAATTTGTATC
Found at i:24773843 original size:24 final size:25
Alignment explanation
Indices: 24773810--24773867 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 25
24773800 TATTTAAATG
* *
24773810 TAAATTAAAAATTAAAG-AATTATT
1 TAAATAAAAAATTAAAGAAATTATC
* *
24773834 TGAATAAAAAATTTAAGAAATTATC
1 TAAATAAAAAATTAAAGAAATTATC
24773859 TAAATAAAA
1 TAAATAAAA
24773868 TTATAAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 14 0.50
25 14 0.50
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (25 bp):
TAAATAAAAAATTAAAGAAATTATC
Found at i:24773849 original size:25 final size:24
Alignment explanation
Indices: 24773810--24773867 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
24773800 TATTTAAATG
* *
24773810 TAAATTAAAAATTAA-AGAATTATT
1 TAAATAAAAAATTAAGA-AATTATC
*
24773834 TGAATAAAAAATTTAAGAAATTATC
1 TAAATAAAAAA-TTAAGAAATTATC
24773859 TAAATAAAA
1 TAAATAAAA
24773868 TTATAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 9 0.32
25 18 0.64
26 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (24 bp):
TAAATAAAAAATTAAGAAATTATC
Found at i:24774295 original size:24 final size:24
Alignment explanation
Indices: 24774268--24774315 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
24774258 TGATAAAAAA
24774268 ATATAAAATTATTTT-TTAAAATTT
1 ATATAAAATT-TTTTATTAAAATTT
*
24774292 ATATATAATTTTTTATTAAAATTT
1 ATATAAAATTTTTTATTAAAATTT
24774316 TAATTCGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
ATATAAAATTTTTTATTAAAATTT
Found at i:24774341 original size:10 final size:10
Alignment explanation
Indices: 24774326--24774357 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
24774316 TAATTCGTGT
24774326 TATTTTTATA
1 TATTTTTATA
24774336 TATTTTTATA
1 TATTTTTATA
24774346 TTATTTTTATA
1 -TATTTTTATA
24774357 T
1 T
24774358 TATATTACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TATTTTTATA
Found at i:24774350 original size:11 final size:11
Alignment explanation
Indices: 24774325--24774360 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
24774315 TTAATTCGTG
24774325 TTATTTTTATA
1 TTATTTTTATA
24774336 -TATTTTTATA
1 TTATTTTTATA
24774346 TTATTTTTATA
1 TTATTTTTATA
24774357 TTAT
1 TTAT
24774361 ATTACTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTTTTATA
Found at i:24775618 original size:24 final size:25
Alignment explanation
Indices: 24775590--24775646 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 25
24775580 TTTCTTAAAA
**
24775590 CATAATCCA-TACAAAGTAAAATTT
1 CATAATCCATTACAAACCAAAATTT
*
24775614 CATAAT-CATTCCAAACCAAAATTT
1 CATAATCCATTACAAACCAAAATTT
*
24775638 CATATTCCA
1 CATAATCCA
24775647 AAAAACGATG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 2 0.07
24 23 0.85
25 2 0.07
ACGTcount: A:0.46, C:0.23, G:0.02, T:0.30
Consensus pattern (25 bp):
CATAATCCATTACAAACCAAAATTT
Found at i:24776295 original size:20 final size:20
Alignment explanation
Indices: 24776270--24776314 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
24776260 CAATATTAAT
*
24776270 AAAATAAAATTAACA-AAGTA
1 AAAAT-AAATTAAAATAAGTA
*
24776290 AAAATATATTAAAATAAGTA
1 AAAATAAATTAAAATAAGTA
24776310 AAAAT
1 AAAAT
24776315 TCATTAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.24
Consensus pattern (20 bp):
AAAATAAATTAAAATAAGTA
Found at i:24776320 original size:20 final size:20
Alignment explanation
Indices: 24776285--24776323 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
24776275 AAAATTAACA
24776285 AAGTAAAAATATATTAAAAT
1 AAGTAAAAATATATTAAAAT
24776305 AAGTAAAAAT-TCATTAAAA
1 AAGTAAAAATAT-ATTAAAA
24776324 ATAATATAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (20 bp):
AAGTAAAAATATATTAAAAT
Found at i:24788197 original size:13 final size:14
Alignment explanation
Indices: 24788179--24788212 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
24788169 TTATTCAACG
*
24788179 ATAAAAATTTTTA-
1 ATAAAAATATTTAT
24788192 ATAAAAATATTTAT
1 ATAAAAATATTTAT
24788206 ATAAAAA
1 ATAAAAA
24788213 CTTATATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATAAAAATATTTAT
Found at i:24789244 original size:11 final size:11
Alignment explanation
Indices: 24789228--24789258 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
24789218 AATCCCATAA
24789228 GAGATTTGTTT
1 GAGATTTGTTT
24789239 GAGATTTGTTT
1 GAGATTTGTTT
24789250 GAGATTTGT
1 GAGATTTGT
24789259 CAGATATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:24789369 original size:51 final size:52
Alignment explanation
Indices: 24789314--24789438 Score: 171
Period size: 52 Copynumber: 2.4 Consensus size: 52
24789304 AAGAGAAAAA
*
24789314 GGATTCTTAATAGGTAAGTTTGACTTACA-AAGAAGAATTCTAAAAAGAAAG
1 GGATTCTTAATAGGCAAGTTTGACTTACAGAAGAAGAATTCTAAAAAGAAAG
* * * * * *
24789365 GGATTCTTAATAGGCAAGTTTGACTTATAGGAGAATAATTCTAAGAGGAGAG
1 GGATTCTTAATAGGCAAGTTTGACTTACAGAAGAAGAATTCTAAAAAGAAAG
*
24789417 GGATTCTTAATGGGCAAGTTTG
1 GGATTCTTAATAGGCAAGTTTG
24789439 TATGGTTATA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
51 27 0.42
52 38 0.58
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (52 bp):
GGATTCTTAATAGGCAAGTTTGACTTACAGAAGAAGAATTCTAAAAAGAAAG
Found at i:24790049 original size:24 final size:25
Alignment explanation
Indices: 24790020--24790096 Score: 104
Period size: 25 Copynumber: 3.1 Consensus size: 25
24790010 AAGATATGAA
24790020 AAGAGCTAAAGGTTCGAGATGT-GG
1 AAGAGCTAAAGGTTCGAGATGTGGG
24790044 AAGAGCTGAAA-GTTCGAGATGTGGG
1 AAGAGCT-AAAGGTTCGAGATGTGGG
** *
24790069 AAGAGCTAAAGGTTTAAGATATGGG
1 AAGAGCTAAAGGTTCGAGATGTGGG
24790094 AAG
1 AAG
24790097 TGCATGGTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
24 21 0.45
25 26 0.55
ACGTcount: A:0.36, C:0.06, G:0.36, T:0.21
Consensus pattern (25 bp):
AAGAGCTAAAGGTTCGAGATGTGGG
Found at i:24790093 original size:25 final size:25
Alignment explanation
Indices: 24790007--24790096 Score: 94
Period size: 25 Copynumber: 3.6 Consensus size: 25
24789997 GAGTTGAAGA
**
24790007 TTCAAGATATGAAAAGAGCTAAAGG
1 TTCAAGATATGGGAAGAGCTAAAGG
* *
24790032 TTCGAGATGT-GGAAGAGCTGAAA-G
1 TTCAAGATATGGGAAGAGCT-AAAGG
* *
24790056 TTCGAGATGTGGGAAGAGCTAAAGG
1 TTCAAGATATGGGAAGAGCTAAAGG
*
24790081 TTTAAGATATGGGAAG
1 TTCAAGATATGGGAAG
24790097 TGCATGGTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
24 21 0.38
25 34 0.62
ACGTcount: A:0.38, C:0.07, G:0.33, T:0.22
Consensus pattern (25 bp):
TTCAAGATATGGGAAGAGCTAAAGG
Found at i:24790355 original size:11 final size:11
Alignment explanation
Indices: 24790339--24790380 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
24790329 AATCTCATAA
*
24790339 GAGATTTATTT
1 GAGATTTGTTT
*
24790350 GAGATTTGTTA
1 GAGATTTGTTT
*
24790361 AAGATTTGTTT
1 GAGATTTGTTT
24790372 GAGATTTGT
1 GAGATTTGT
24790381 CAGATATTGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:24790486 original size:52 final size:51
Alignment explanation
Indices: 24790405--24790508 Score: 138
Period size: 51 Copynumber: 2.0 Consensus size: 51
24790395 TGGACAAGAA
* *
24790405 GACTTGCAAAAGAAGAATTCCAAGAGAAAGTGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAAAGAAGAATTCCAAAAGAAAG-GGATTCTTAATAGGCAAGTTT
* * *
24790457 GACTTGCAAGAGAAG-ATTCTAAAAGGAAAGGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAAAGAAGAATTCCAAAA-GAAAGGGATTCTTAATAGGCAAGTTT
24790508 G
1 G
24790509 TATGGTTATA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 27 0.59
52 19 0.41
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.26
Consensus pattern (51 bp):
GACTTGCAAAAGAAGAATTCCAAAAGAAAGGGATTCTTAATAGGCAAGTTT
Found at i:24794983 original size:32 final size:31
Alignment explanation
Indices: 24794947--24795036 Score: 83
Period size: 32 Copynumber: 2.8 Consensus size: 31
24794937 AGAATTTGTG
*
24794947 TATTTTTATTATATAAAATATTAAAATTTATA
1 TATTTTTATTATAT-AAATATAAAAATTTATA
* ** *
24794979 TATTTATATTATATTTTATATGAAAA-TTATA
1 TATTTTTATTATA-TAAATATAAAAATTTATA
* *
24795010 TATTATGATTCATATAAATATAAAAAT
1 TATTTTTATT-ATATAAATATAAAAAT
24795037 ATTAAATAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
31 21 0.47
32 23 0.51
33 1 0.02
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (31 bp):
TATTTTTATTATATAAATATAAAAATTTATA
Found at i:24796667 original size:19 final size:19
Alignment explanation
Indices: 24796620--24796691 Score: 63
Period size: 20 Copynumber: 3.7 Consensus size: 19
24796610 AAAAGAAAGT
**
24796620 TTTTTTAAAAATTCAAAAAA
1 TTTTTTAAAAATT-TTAAAA
**
24796640 TTTAGTAAAAATTTTAAAA
1 TTTTTTAAAAATTTTAAAA
** *
24796659 TTTTTTAAAAAACTTGAAA
1 TTTTTTAAAAATTTTAAAA
24796678 TATTTTTAAAAATT
1 T-TTTTTAAAAATT
24796692 GTAGAAAATA
Statistics
Matches: 40, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
19 19 0.47
20 21 0.52
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (19 bp):
TTTTTTAAAAATTTTAAAA
Found at i:24797163 original size:28 final size:27
Alignment explanation
Indices: 24797119--24797171 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
24797109 TTTTAAGAAT
24797119 TTTTTTAAAAAATTTTAGAATTTTTTTA
1 TTTTTTAAAAAATTTTAG-ATTTTTTTA
*
24797147 TTTTTTAAAAGGA-TTTAGATTTTTT
1 TTTTTTAAAA-AATTTTAGATTTTTT
24797172 ACTTTAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 7 0.30
28 15 0.65
29 1 0.04
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (27 bp):
TTTTTTAAAAAATTTTAGATTTTTTTA
Found at i:24797266 original size:18 final size:17
Alignment explanation
Indices: 24797234--24797267 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
24797224 TATTTTTATT
*
24797234 AAAATTTTTATTTTTTG
1 AAAATTTTTAATTTTTG
24797251 AAAATTTTTGAATTTTT
1 AAAATTTTT-AATTTTT
24797268 TAAAGTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
AAAATTTTTAATTTTTG
Found at i:24797268 original size:19 final size:17
Alignment explanation
Indices: 24797221--24797259 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
24797211 ATTGAGAAGC
*
24797221 TTTTATTTTTATTAAAAT
1 TTTTATTTTT-TGAAAAT
24797239 TTTTATTTTTTGAAAAT
1 TTTTATTTTTTGAAAAT
24797256 TTTT
1 TTTT
24797260 GAATTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (17 bp):
TTTTATTTTTTGAAAAT
Found at i:24797343 original size:19 final size:18
Alignment explanation
Indices: 24797316--24797430 Score: 56
Period size: 19 Copynumber: 6.2 Consensus size: 18
24797306 AAATATTTCA
24797316 TATATATTTTTTAATTTTTT
1 TATA-ATTTTTTAA-TTTTT
* * * *
24797336 TATAATTTTTAAAATATA
1 TATAATTTTTTAATTTTT
*
24797354 T-TAATTTTTTTATTTTT
1 TATAATTTTTTAATTTTT
*
24797371 TA-AA-ATTTTAATTATTTT
1 TATAATTTTTTAA-T-TTTT
* **
24797389 TAAAATATTTTGGATTTTT
1 TATAAT-TTTTTAATTTTT
*
24797408 TAAAATTTTTTGAAATTTTT
1 TATAATTTTTT--AATTTTT
24797428 TAT
1 TAT
24797431 TAATACTAAT
Statistics
Matches: 70, Mismatches: 17, Indels: 16
0.68 0.17 0.16
Matches are distributed among these distances:
16 5 0.07
17 15 0.21
18 13 0.19
19 20 0.29
20 13 0.19
21 4 0.06
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (18 bp):
TATAATTTTTTAATTTTT
Found at i:24797366 original size:28 final size:26
Alignment explanation
Indices: 24797324--24797399 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 26
24797314 CATATATATT
24797324 TTTTAATTTTTTTATAATTTTTAAAA
1 TTTTAATTTTTTTATAATTTTTAAAA
24797350 TATATTAATTTTTTTAT--TTTTTAAAA
1 T-T-TTAATTTTTTTATAATTTTTAAAA
*
24797376 TTTTAATTATTTTTAAAATATTTT
1 TTTTAATT-TTTTTATAAT-TTTT
24797400 GGATTTTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
24 6 0.14
25 7 0.16
26 11 0.26
27 2 0.05
28 17 0.40
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (26 bp):
TTTTAATTTTTTTATAATTTTTAAAA
Found at i:24797377 original size:18 final size:18
Alignment explanation
Indices: 24797356--24797418 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
24797346 AAAATATATT
24797356 AATTTTTTTATTTTTTAA
1 AATTTTTTTATTTTTTAA
*
24797374 AATTTTAATTA-TTTTTAA
1 AATTTT-TTTATTTTTTAA
**
24797392 AATATTTTGGATTTTTTAA
1 AAT-TTTTTTATTTTTTAA
24797411 AATTTTTT
1 AATTTTTT
24797419 GAAATTTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
18 21 0.57
19 16 0.43
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (18 bp):
AATTTTTTTATTTTTTAA
Found at i:24806907 original size:24 final size:24
Alignment explanation
Indices: 24806880--24806927 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
24806870 ATGTATAGAC
24806880 TCTCCGATATACTCTCATGGACTT
1 TCTCCGATATACTCTCATGGACTT
*
24806904 TCTCTGATATACTCTCATGGACTT
1 TCTCCGATATACTCTCATGGACTT
24806928 CAAGTGTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.40
Consensus pattern (24 bp):
TCTCCGATATACTCTCATGGACTT
Found at i:24810719 original size:30 final size:29
Alignment explanation
Indices: 24810692--24810752 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
24810682 TTTTTTAAGA
*
24810692 AAAATCAATTAAGATAAATAAAATTTAAAT
1 AAAATAAATTAA-ATAAATAAAATTTAAAT
* *
24810722 CAAATAAATTAAATAGATAAAA-TTAAAT
1 AAAATAAATTAAATAAATAAAATTTAAAT
24810750 AAA
1 AAA
24810753 TTACCAATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 8 0.30
29 9 0.33
30 10 0.37
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (29 bp):
AAAATAAATTAAATAAATAAAATTTAAAT
Found at i:24810735 original size:14 final size:14
Alignment explanation
Indices: 24810698--24810753 Score: 69
Period size: 14 Copynumber: 3.9 Consensus size: 14
24810688 AAGAAAAATC
24810698 AATTAAGATAAATAA
1 AATTAA-ATAAATAA
24810713 AATTTAAATCAAAT-A
1 AA-TTAAAT-AAATAA
*
24810728 AATTAAATAGATAA
1 AATTAAATAAATAA
24810742 AATTAAATAAAT
1 AATTAAATAAAT
24810754 TACCAATGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
13 3 0.08
14 18 0.50
15 7 0.19
16 8 0.22
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (14 bp):
AATTAAATAAATAA
Found at i:24811290 original size:20 final size:21
Alignment explanation
Indices: 24811253--24811291 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
24811243 AAAATTTTGC
*
24811253 TAAAAAAATCAACCAAAAATT
1 TAAAAAAATAAACCAAAAATT
*
24811274 TAAAAAAA-AAACTAAAAA
1 TAAAAAAATAAACCAAAAA
24811292 ATTCTAGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.74, C:0.10, G:0.00, T:0.15
Consensus pattern (21 bp):
TAAAAAAATAAACCAAAAATT
Found at i:24812809 original size:17 final size:17
Alignment explanation
Indices: 24812786--24812833 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
24812776 AAATACTTAT
*
24812786 AAAATAAATATAA-TAA
1 AAAATAAATAAAATTAA
24812802 ATAAATAAATAAAATTAA
1 A-AAATAAATAAAATTAA
*
24812820 AAAATAAAAAAAAT
1 AAAATAAATAAAAT
24812834 GGCTCAGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 1 0.04
17 23 0.82
18 4 0.14
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAATAAATAAAATTAA
Found at i:24812816 original size:9 final size:9
Alignment explanation
Indices: 24812784--24812833 Score: 59
Period size: 9 Copynumber: 5.8 Consensus size: 9
24812774 AAAAATACTT
24812784 ATAAAATAA
1 ATAAAATAA
*
24812793 ATATAATAA
1 ATAAAATAA
24812802 AT-AAATAA
1 ATAAAATAA
*
24812810 ATAAAATTA
1 ATAAAATAA
24812819 A-AAAATAA
1 ATAAAATAA
*
24812827 AAAAAAT
1 ATAAAAT
24812834 GGCTCAGCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
8 14 0.40
9 21 0.60
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAAAATAA
Found at i:24812828 original size:13 final size:14
Alignment explanation
Indices: 24812784--24812828 Score: 53
Period size: 13 Copynumber: 3.4 Consensus size: 14
24812774 AAAAATACTT
24812784 ATAAAA-TAAATATA
1 ATAAAATTAAATA-A
24812798 AT-AAA-TAAATAA
1 ATAAAATTAAATAA
24812810 ATAAAATTAAA-AA
1 ATAAAATTAAATAA
24812823 ATAAAA
1 ATAAAA
24812829 AAAATGGCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.10
13 20 0.69
14 6 0.21
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
ATAAAATTAAATAA
Found at i:24814818 original size:44 final size:44
Alignment explanation
Indices: 24814750--24814836 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 44
24814740 CATTGTAAGG
* * * *
24814750 CATTAAGAGGAAAAGATAAGGAATGGAATGAAAAATGAAATATT
1 CATTAAAAGGAAAAGAGAAAGAATGAAATGAAAAATGAAATATT
24814794 CATTAAAAGGAAAAGAGAAAGAATGAAATGAAAAATGAAATAT
1 CATTAAAAGGAAAAGAGAAAGAATGAAATGAAAAATGAAATAT
24814837 CTCTTCTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.59, C:0.02, G:0.21, T:0.18
Consensus pattern (44 bp):
CATTAAAAGGAAAAGAGAAAGAATGAAATGAAAAATGAAATATT
Found at i:24816023 original size:15 final size:15
Alignment explanation
Indices: 24816003--24816039 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
24815993 GTAAGCAAAG
24816003 CATAGATCTTATCAA
1 CATAGATCTTATCAA
24816018 CATAGATCTTATCAA
1 CATAGATCTTATCAA
24816033 CATAGAT
1 CATAGAT
24816040 TTGGCATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (15 bp):
CATAGATCTTATCAA
Found at i:24826091 original size:95 final size:94
Alignment explanation
Indices: 24825910--24826268 Score: 411
Period size: 96 Copynumber: 3.8 Consensus size: 94
24825900 TTGTCTTAAG
** *
24825910 AAAAATCATTAAATCTTTCAATAGTTTCATAAGATTTAATTTTGAGATTTAAATCTT-TCAATAG
1 AAAAATCATTAAATCTTTCAATAGTTTGGTAAGATTTAATTTAGAGATTTAAATCTTCT-AATAG
* * *
24825974 TTTAGTAGGATTAAAAGCTTTATTTTTTCAT
65 TTTGGTAGGATTAAAA-TTTTATTTTTTTAT
** * * *
24826005 AAAACCCATTAAATCTTTTAATAGTTTGGTAAGATTTAATTTAGACATTTAAATATTCTAATAGT
1 AAAAATCATTAAATCTTTCAATAGTTTGGTAAGATTTAATTTAGAGATTTAAATCTTCTAATAGT
*
24826070 TTGGTAAGATTGAAAATTTTATTTTCTTTAT
66 TTGGTAGGATT-AAAATTTTATTTT-TTTAT
* * *
24826101 AAAAATCATTAAATCTTTCAATAGTTTTGG-AAGATTTAATTTAGAGATTTAAATCCTCCACTAG
1 AAAAATCATTAAATCTTTCAATAG-TTTGGTAAGATTTAATTTAGAGATTTAAATCTTCTAATAG
* *
24826165 TTTGTTAGGATTAAAAATTTCATTTTATTTTAT
65 TTTGGTAGGATT-AAAATTTTA-TTT-TTTTAT
* * * *
24826198 AAAAATCATTTAATCCTTT-AATACTTTGGTAATATGTAATTTAGAGATTTAAAT-TCTCTAATA
1 AAAAATCATTAAAT-CTTTCAATAGTTTGGTAAGATTTAATTTAGAGATTTAAATCT-TCTAATA
24826261 GTTTGGTA
64 GTTTGGTA
24826269 TGATGAATTC
Statistics
Matches: 223, Mismatches: 32, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
95 72 0.32
96 82 0.37
97 64 0.29
98 5 0.02
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.45
Consensus pattern (94 bp):
AAAAATCATTAAATCTTTCAATAGTTTGGTAAGATTTAATTTAGAGATTTAAATCTTCTAATAGT
TTGGTAGGATTAAAATTTTATTTTTTTAT
Found at i:24830308 original size:20 final size:21
Alignment explanation
Indices: 24830283--24830341 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
24830273 TCAAACAAAA
24830283 AAATAAAATAAAAAATAA-AT
1 AAATAAAATAAAAAATAATAT
* *
24830303 AAATAAATTATAAAATAATAT
1 AAATAAAATAAAAAATAATAT
*
24830324 TAATAATAATAATAAAAT
1 AAATAA-AATAA-AAAAT
24830342 TTAATTATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 16 0.52
21 7 0.23
22 3 0.10
23 5 0.16
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (21 bp):
AAATAAAATAAAAAATAATAT
Found at i:24833381 original size:23 final size:23
Alignment explanation
Indices: 24833351--24833429 Score: 95
Period size: 23 Copynumber: 3.4 Consensus size: 23
24833341 ATCTTTGCTC
*
24833351 TGCATATGGGTTGTTAAGGGATT
1 TGCATATGGGTTGTTAAGGGATA
* * * *
24833374 TGCATATGGGCTATTAAGGTACA
1 TGCATATGGGTTGTTAAGGGATA
*
24833397 TGCATAAGGGTTGTTAAGGGATA
1 TGCATATGGGTTGTTAAGGGATA
*
24833420 TGCATGTGGG
1 TGCATATGGG
24833430 CTATTAAGAG
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.25, C:0.08, G:0.34, T:0.33
Consensus pattern (23 bp):
TGCATATGGGTTGTTAAGGGATA
Found at i:24833418 original size:46 final size:46
Alignment explanation
Indices: 24833351--24833454 Score: 156
Period size: 46 Copynumber: 2.3 Consensus size: 46
24833341 ATCTTTGCTC
* *
24833351 TGCATATGGGTTGTTAAGGGATTTGCATATGGGCTATTAAG-GTACA
1 TGCATAAGGGTTGTTAAGGGATATGCATATGGGCTATTAAGAG-ACA
* *
24833397 TGCATAAGGGTTGTTAAGGGATATGCATGTGGGCTATTAAGAGACG
1 TGCATAAGGGTTGTTAAGGGATATGCATATGGGCTATTAAGAGACA
24833443 TGCATAAGGGTT
1 TGCATAAGGGTT
24833455 TACAGCTTCA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
46 52 0.98
47 1 0.02
ACGTcount: A:0.27, C:0.09, G:0.33, T:0.32
Consensus pattern (46 bp):
TGCATAAGGGTTGTTAAGGGATATGCATATGGGCTATTAAGAGACA
Found at i:24833961 original size:21 final size:22
Alignment explanation
Indices: 24833937--24833980 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
24833927 AGATTTATGC
*
24833937 AAAAAAAAT-TAATAATAAAAT
1 AAAAAAAATATAAAAATAAAAT
*
24833958 -AAAAATATATAAAAATAAAAT
1 AAAAAAAATATAAAAATAAAAT
24833979 AA
1 AA
24833981 TAATATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
20 7 0.37
21 11 0.58
22 1 0.05
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (22 bp):
AAAAAAAATATAAAAATAAAAT
Found at i:24834114 original size:5 final size:5
Alignment explanation
Indices: 24834104--24834162 Score: 50
Period size: 5 Copynumber: 11.4 Consensus size: 5
24834094 TTAAATATTA
*
24834104 AAAAT AAAAT AAAAT AAAAT --AAT AATAAT AACAAT AATAT AATAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AA-AAT AAAAT AA-AAT
*
24834150 AATAT AATAAT AA
1 AAAAT AA-AAT AA
24834163 TTTTAAGGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
3 3 0.07
5 23 0.52
6 18 0.41
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (5 bp):
AAAAT
Found at i:24834129 original size:3 final size:3
Alignment explanation
Indices: 24834106--24834163 Score: 72
Period size: 3 Copynumber: 21.0 Consensus size: 3
24834096 AAATATTAAA
*
24834106 AAT AA- AAT AA- AAT AA- AAT AAT AAT AAT AAC AAT AAT -AT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
24834150 AAT -AT AAT AAT AAT
1 AAT AAT AAT AAT AAT
24834164 TTTAAGGAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
2 10 0.21
3 38 0.79
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:24834130 original size:11 final size:11
Alignment explanation
Indices: 24834106--24834163 Score: 73
Period size: 11 Copynumber: 5.3 Consensus size: 11
24834096 AAATATTAAA
24834106 AATAAAATAA-
1 AATAAAATAAT
24834116 AATAAAATAAT
1 AATAAAATAAT
*
24834127 AATAATAACAAT
1 AATAA-AATAAT
*
24834139 AATATAATAAT
1 AATAAAATAAT
*
24834150 AATATAATAAT
1 AATAAAATAAT
24834161 AAT
1 AAT
24834164 TTTAAGGAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
10 10 0.23
11 24 0.56
12 9 0.21
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:24834145 original size:20 final size:19
Alignment explanation
Indices: 24834106--24834159 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
24834096 AAATATTAAA
24834106 AATAA-AATAAAATAAAAT
1 AATAATAATAAAATAAAAT
*
24834124 AATAATAATAACAATAATAT
1 AATAATAATAA-AATAAAAT
*
24834144 AATAATAATATAATAA
1 AATAATAATAAAATAA
24834160 TAATTTTAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
18 5 0.16
19 10 0.31
20 17 0.53
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (19 bp):
AATAATAATAAAATAAAAT
Found at i:24834163 original size:14 final size:15
Alignment explanation
Indices: 24834106--24834163 Score: 72
Period size: 14 Copynumber: 4.2 Consensus size: 15
24834096 AAATATTAAA
24834106 AATAA-AATAA-AAT
1 AATAATAATAATAAT
24834119 AA-AATAATAATAAT
1 AATAATAATAATAAT
*
24834133 AACAATAAT-ATAAT
1 AATAATAATAATAAT
24834147 AATAAT-ATAATAAT
1 AATAATAATAATAAT
24834161 AAT
1 AAT
24834164 TTTAAGGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
12 2 0.05
13 9 0.22
14 23 0.57
15 6 0.15
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (15 bp):
AATAATAATAATAAT
Found at i:24834332 original size:19 final size:19
Alignment explanation
Indices: 24834308--24834353 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
24834298 TCCTAAAATA
* *
24834308 AAACTCTAGGTGAAACCTT
1 AAACTCTAAGTGAAACCCT
24834327 AAACTCTAAGTGAAACCCT
1 AAACTCTAAGTGAAACCCT
*
24834346 AAATTCTA
1 AAACTCTA
24834354 TATAAAATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (19 bp):
AAACTCTAAGTGAAACCCT
Found at i:24835628 original size:10 final size:10
Alignment explanation
Indices: 24835613--24835642 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
24835603 GATATACTAC
24835613 TTTGCACATT
1 TTTGCACATT
24835623 TTTGCACATT
1 TTTGCACATT
24835633 TTTGCACATT
1 TTTGCACATT
24835643 CATTTTCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50
Consensus pattern (10 bp):
TTTGCACATT
Found at i:24838317 original size:3 final size:3
Alignment explanation
Indices: 24838311--24838349 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
24838301 AAAAAAGCAA
24838311 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
24838350 GATTATACCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:24842694 original size:95 final size:95
Alignment explanation
Indices: 24842531--24842708 Score: 232
Period size: 95 Copynumber: 1.9 Consensus size: 95
24842521 AATTCTCAAG
* * * ** * * **
24842531 AAAAATTTAGATCTAATTTTTTTGGCACTTTAGAAAGAATTTAAGCCTAGTTTAGTTGGCACCCA
1 AAAAATTTAAATCTAATTTTTCTAGCACTCGAGAAAGAATTTAAGCCCAATTTAACTGGCACCCA
24842596 AGTTTTAAGCTCAATTTAGTTGGCACTCAT
66 AGTTTTAAGCTCAATTTAGTTGGCACTCAT
**
24842626 AAAAATTTAAAT-TCAATTTTTCTAGCACTCGAGAAAGAATTTAAGCCCAATTTAACTGGCACTT
1 AAAAATTTAAATCT-AATTTTTCTAGCACTCGAGAAAGAATTTAAGCCCAATTTAACTGGCACCC
*
24842690 AAGTTTTAAGCTCAGTTTA
65 AAGTTTTAAGCTCAATTTA
24842709 ATTAACATGC
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
94 1 0.01
95 69 0.99
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (95 bp):
AAAAATTTAAATCTAATTTTTCTAGCACTCGAGAAAGAATTTAAGCCCAATTTAACTGGCACCCA
AGTTTTAAGCTCAATTTAGTTGGCACTCAT
Found at i:24842813 original size:22 final size:22
Alignment explanation
Indices: 24842725--24842813 Score: 61
Period size: 22 Copynumber: 4.0 Consensus size: 22
24842715 ATGCAAGCTA
* * *
24842725 AGATTAGCTAGTACATAAGCTT
1 AGATTAGCTTGCACATAAACTT
* * ** **
24842747 AGTTTAGCTTACATGTAAACCC
1 AGATTAGCTTGCACATAAACTT
* * * *
24842769 AGATTAGCTGGCATACAAGCTT
1 AGATTAGCTTGCACATAAACTT
24842791 AGATTAGCTTGCACATAAACTT
1 AGATTAGCTTGCACATAAACTT
24842813 A
1 A
24842814 ATTTAGTTGG
Statistics
Matches: 46, Mismatches: 21, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (22 bp):
AGATTAGCTTGCACATAAACTT
Found at i:24842819 original size:22 final size:22
Alignment explanation
Indices: 24842794--24842865 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 22
24842784 CAAGCTTAGA
**
24842794 TTAGCTTGCACATAAACTTAAT
1 TTAGCTTGCACATAAACCCAAT
*
24842816 TTAG-TTGGCATATAAACCCAAT
1 TTAGCTT-GCACATAAACCCAAT
* * * *
24842838 TTATCTGGCACATAAGCCCAAA
1 TTAGCTTGCACATAAACCCAAT
24842860 TTAGCT
1 TTAGCT
24842866 ACAAAAATAC
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
21 2 0.05
22 36 0.92
23 1 0.03
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (22 bp):
TTAGCTTGCACATAAACCCAAT
Found at i:24843105 original size:33 final size:32
Alignment explanation
Indices: 24843068--24843164 Score: 88
Period size: 33 Copynumber: 2.9 Consensus size: 32
24843058 AGTTTAGCTT
24843068 ACACCCCATAAAAATTTAAGCCTAGATTGTCTA
1 ACACCCCATAAAAATTTAAGCCTAGATTG-CTA
* * *
24843101 ACACCCCATAATGAAAATTTAAGTCTAG-TCCAGCTG
1 ACACCCCAT-A--AAAATTTAAGCCTAGAT--TGCTA
* *
24843137 GCACCCAATAAAAATTTAAGCCTAGATT
1 ACACCCCATAAAAATTTAAGCCTAGATT
24843165 AGTTAGCACT
Statistics
Matches: 51, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
33 23 0.45
34 2 0.04
35 2 0.04
36 23 0.45
37 1 0.02
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (32 bp):
ACACCCCATAAAAATTTAAGCCTAGATTGCTA
Found at i:24843476 original size:1 final size:1
Alignment explanation
Indices: 24843470--24843521 Score: 50
Period size: 1 Copynumber: 52.0 Consensus size: 1
24843460 GTTTTAAGGT
* * * * * *
24843470 AAAAAAAAAAAAAGAAAAAAAATAACAATAAAAATAAAAAATAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
24843522 CTTATGAAGC
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.88, C:0.02, G:0.02, T:0.08
Consensus pattern (1 bp):
A
Found at i:24843489 original size:12 final size:12
Alignment explanation
Indices: 24843469--24843521 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
24843459 CGTTTTAAGG
24843469 TAAAAAAAAAAA
1 TAAAAAAAAAAA
*
24843481 -AAGAAAAAAAA
1 TAAAAAAAAAAA
* *
24843492 TAACAATAAAAA
1 TAAAAAAAAAAA
24843504 TAAAAAATAAAAA
1 TAAAAAA-AAAAA
24843517 -AAAAA
1 TAAAAA
24843522 CTTATGAAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
11 10 0.29
12 19 0.56
13 5 0.15
ACGTcount: A:0.87, C:0.02, G:0.02, T:0.09
Consensus pattern (12 bp):
TAAAAAAAAAAA
Found at i:24845458 original size:23 final size:23
Alignment explanation
Indices: 24845432--24845480 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
24845422 TTTGCTCTGT
**
24845432 ATGTGGGCTGTTAAGGGGCGTGC
1 ATGTGGGCTGTTAAGGAACGTGC
*
24845455 ATGTGGGTTGTTAAGGAACGTGC
1 ATGTGGGCTGTTAAGGAACGTGC
24845478 ATG
1 ATG
24845481 AGGACTACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.18, C:0.10, G:0.43, T:0.29
Consensus pattern (23 bp):
ATGTGGGCTGTTAAGGAACGTGC
Found at i:24845952 original size:16 final size:17
Alignment explanation
Indices: 24845931--24845969 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
24845921 TTAATGCATT
24845931 AATTTA-CTTTTTATAC
1 AATTTATCTTTTTATAC
*
24845947 AATTTATTTTTTTATAC
1 AATTTATCTTTTTATAC
*
24845964 ATTTTA
1 AATTTA
24845970 GATTTATGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (17 bp):
AATTTATCTTTTTATAC
Found at i:24846024 original size:16 final size:14
Alignment explanation
Indices: 24845979--24846034 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 14
24845969 AGATTTATGC
24845979 TAAAAAATATAATAA
1 TAAAAAATA-AATAA
*
24845994 TAAAATATAAA-AA
1 TAAAAAATAAATAA
24846007 TAGAAAAATGAAATAA
1 TA-AAAAAT-AAATAA
*
24846023 T-AATAATAAATA
1 TAAAAAATAAATA
24846035 TATATTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
13 9 0.26
14 12 0.34
15 11 0.31
16 3 0.09
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (14 bp):
TAAAAAATAAATAA
Found at i:24846369 original size:19 final size:20
Alignment explanation
Indices: 24846327--24846370 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
24846317 AACTCTAAAA
*
24846327 TTAAACCTTAGGTGAAATCC
1 TTAAACCCTAGGTGAAATCC
24846347 -TAAACCCTAGGTGAAA-CC
1 TTAAACCCTAGGTGAAATCC
24846365 TTAAAC
1 TTAAAC
24846371 TCTAAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.25
Consensus pattern (20 bp):
TTAAACCCTAGGTGAAATCC
Found at i:24855376 original size:2 final size:2
Alignment explanation
Indices: 24855363--24855394 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
24855353 TTGACACCAA
*
24855363 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24855395 TAAGATTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:24856242 original size:2 final size:2
Alignment explanation
Indices: 24856225--24856268 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
24856215 CCATGATGTG
* *
24856225 TA TA TA AA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24856267 TA
1 TA
24856269 ACTTCATCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:24857168 original size:17 final size:16
Alignment explanation
Indices: 24857123--24857166 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
24857113 TTTGAATTGG
*
24857123 AAAAAATTCAAATTAA
1 AAAAAATTTAAATTAA
* *
24857139 AAAAAATCTAAATTTA
1 AAAAAATTTAAATTAA
24857155 AAAAAATTTAAA
1 AAAAAATTTAAA
24857167 ATCGATGCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAAATTTAAATTAA
Found at i:24857284 original size:2 final size:2
Alignment explanation
Indices: 24857277--24857306 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
24857267 TAGCTCAAAC
24857277 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24857307 AATAAACATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24857864 original size:13 final size:13
Alignment explanation
Indices: 24857846--24857872 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24857836 AAATAGTCCT
24857846 TCCCACATATATA
1 TCCCACATATATA
24857859 TCCCACATATATA
1 TCCCACATATATA
24857872 T
1 T
24857873 ATATATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.30, G:0.00, T:0.33
Consensus pattern (13 bp):
TCCCACATATATA
Found at i:24858005 original size:15 final size:16
Alignment explanation
Indices: 24857985--24858017 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24857975 TGGCACATCA
24857985 ATTTTA-TTAAATATT
1 ATTTTATTTAAATATT
*
24858000 ATTTTATTTAATTATT
1 ATTTTATTTAAATATT
24858016 AT
1 AT
24858018 ATTTTCTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATTTTATTTAAATATT
Found at i:24858224 original size:15 final size:15
Alignment explanation
Indices: 24858183--24858225 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
24858173 CACCACCGCC
*
24858183 GTCAGCATCACCACT
1 GTCACCATCACCACT
* * *
24858198 CTCACAAGCACCACT
1 GTCACCATCACCACT
24858213 GTCACCATCACCA
1 GTCACCATCACCA
24858226 TTAATCACCA
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.30, C:0.44, G:0.09, T:0.16
Consensus pattern (15 bp):
GTCACCATCACCACT
Found at i:24859793 original size:13 final size:13
Alignment explanation
Indices: 24859775--24859799 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24859765 TTCTATTTGC
24859775 AAAAAATAAAATA
1 AAAAAATAAAATA
24859788 AAAAAATAAAAT
1 AAAAAATAAAAT
24859800 GACCAAGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAAATAAAATA
Found at i:24859890 original size:16 final size:15
Alignment explanation
Indices: 24859873--24859918 Score: 53
Period size: 13 Copynumber: 3.3 Consensus size: 15
24859863 TAAAATTTTA
24859873 AAAATATATAATAAT
1 AAAATATATAATAAT
24859888 -AAATATA-AAT-AT
1 AAAATATATAATAAT
* *
24859900 AAAATACATAAAAAT
1 AAAATATATAATAAT
24859915 AAAA
1 AAAA
24859919 ATTGTTTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 2 0.08
13 9 0.35
14 9 0.35
15 6 0.23
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATATATAATAAT
Found at i:24859899 original size:20 final size:21
Alignment explanation
Indices: 24859874--24859917 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
24859864 AAAATTTTAA
* *
24859874 AAATATATAATA-ATAAATAT
1 AAATATAAAATACATAAAAAT
24859894 AAATATAAAATACATAAAAAT
1 AAATATAAAATACATAAAAAT
24859915 AAA
1 AAA
24859918 AATTGTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
AAATATAAAATACATAAAAAT
Found at i:24860649 original size:31 final size:31
Alignment explanation
Indices: 24860614--24860678 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
24860604 AATAGCGATG
* *
24860614 TTTTATACGAAATGCTATTAATTTAGCAGCA
1 TTTTATACGAAATGCTACTAATTTAACAGCA
* *
24860645 TTTTATACGAAATGCTGCTAATTTAACGGCA
1 TTTTATACGAAATGCTACTAATTTAACAGCA
24860676 TTT
1 TTT
24860679 GTAAGCACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (31 bp):
TTTTATACGAAATGCTACTAATTTAACAGCA
Found at i:24862568 original size:160 final size:162
Alignment explanation
Indices: 24862211--24862959 Score: 847
Period size: 160 Copynumber: 4.7 Consensus size: 162
24862201 GCATTTAGGC
* * * * * * *
24862211 TTTTCACACATATCAA-TCATGAAAACCAAGTTCAATCATTTGAAAAAGTTTAATATTACGTATT
1 TTTTCACACATATCAACT-ATGGAAACCAAGTTCAATTATTCGGATAAGTTTAATATCATGTATT
* ** *
24862275 GAAGCCATCCAAACTATTAAAATAGATTAATAAAAAT-AAATTTGTATTTTTGCCTTTTAACAGC
65 GAAGCTATCCAAACTATTAAAATAGAACAAT-AATATCAAATTTGTATTTTTGCCTTTTAACAGC
* *
24862339 A-AAAATAGTCCTAAATAGATGTAAACGATAACT
129 ATAAAATAGTCCTAAACAAATGTAAACGATAACT
** * *
24862372 TTTTCACACATATCAACCGTAGAAACCAAGTTCAATTATTCAGATAAGTTTAATATCATGTATTG
1 TTTTCACACATATCAACTATGGAAACCAAGTTCAATTATTCGGATAAGTTTAATATCATGTATTG
* *
24862437 AAGCTATCCAAACTGTTAAAATAGAACAATAATATCAAATTTGTA-TTTTGCCTTTTAATAGCAT
66 AAGCTATCCAAACTATTAAAATAGAACAATAATATCAAATTTGTATTTTTGCCTTTTAACAGCAT
* *
24862501 AAAATA-TCCTAAACAAATGTAAACGTTAGCT
131 AAAATAGTCCTAAACAAATGTAAACGATAACT
* * * *
24862532 TTTTCACACATATTAACTATGGAAGCCAAGTTCAATTATTCTGACAAGTTTAATATCATGTATTG
1 TTTTCACACATATCAACTATGGAAACCAAGTTCAATTATTCGGATAAGTTTAATATCATGTATTG
* * * ** * * *
24862597 AAGCTATGCAAACTATTAAAATAGAACAATAACAACAAATTTACATGTTTGCCTCTTAACAGCAC
66 AAGCTATCCAAACTATTAAAATAGAACAATAATATCAAATTTGTATTTTTGCCTTTTAACAGCAT
* *
24862662 AAAA-AGTCTTAAACAAATGTAAACGATAATT
131 AAAATAGTCCTAAACAAATGTAAACGATAACT
* * * *
24862693 TTTTCA-ACATATCAACTATGGAAACCAAGTTCAATTGTTTGGAGAA-TTTAATATCATATATT-
1 TTTTCACACATATCAACTATGGAAACCAAGTTCAATTATTCGGATAAGTTTAATATCATGTATTG
* * * * * * *
24862755 AGAGCTATCCAAACTGTTAAAATATAACAAT-TTGTCCAAATTTGTATTTTTACCTATTAACGGC
66 A-AGCTATCCAAACTATTAAAATAGAACAATAATAT-CAAATTTGTATTTTTGCCTTTTAACAGC
* * * *
24862819 ATAAAAT-GTCCTAAATAGACGTAAACAATAACT
129 ATAAAATAGTCCTAAACAAATGTAAACGATAACT
* ** * * *
24862852 TTTTCATACATATCAACCGTGGAAACTAAGTTCAATAATTTGGATAAGTTTAATATCATGTATTG
1 TTTTCACACATATCAACTATGGAAACCAAGTTCAATTATTCGGATAAGTTTAATATCATGTATTG
* *
24862917 AAACTATCAAAACTATTAAAATAGAACAATAACTAT-AAATTTG
66 AAGCTATCCAAACTATTAAAATAGAACAATAA-TATCAAATTTG
24862960 CATTATTACC
Statistics
Matches: 493, Mismatches: 82, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
158 1 0.00
159 94 0.19
160 208 0.42
161 187 0.38
162 1 0.00
163 2 0.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (162 bp):
TTTTCACACATATCAACTATGGAAACCAAGTTCAATTATTCGGATAAGTTTAATATCATGTATTG
AAGCTATCCAAACTATTAAAATAGAACAATAATATCAAATTTGTATTTTTGCCTTTTAACAGCAT
AAAATAGTCCTAAACAAATGTAAACGATAACT
Found at i:24864170 original size:13 final size:13
Alignment explanation
Indices: 24864149--24864182 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
24864139 ATAAAAGCGA
24864149 ATATATAAAAAAC
1 ATATATAAAAAAC
* *
24864162 ATATGTAAAGAAC
1 ATATATAAAAAAC
24864175 ATATATAA
1 ATATATAA
24864183 GGACATTTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26
Consensus pattern (13 bp):
ATATATAAAAAAC
Found at i:24868531 original size:17 final size:17
Alignment explanation
Indices: 24868509--24868541 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
24868499 TGGGTTCCAA
24868509 ATGGGTATTTA-AGAAAG
1 ATGGGT-TTTAGAGAAAG
24868526 ATGGGTTTTAGAGAAA
1 ATGGGTTTTAGAGAAA
24868542 AATTTTATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.39, C:0.00, G:0.30, T:0.30
Consensus pattern (17 bp):
ATGGGTTTTAGAGAAAG
Found at i:24869149 original size:69 final size:68
Alignment explanation
Indices: 24869021--24869157 Score: 156
Period size: 69 Copynumber: 2.0 Consensus size: 68
24869011 CATTTTAGGC
* * * * *
24869021 AAAAAATGCCTTCAATAATCTCCTTAAATTTTGATGAACATATTATTGAATGTATTTTTAGTAAA
1 AAAAAAAGCCTTCAATAATCTCCTTAAATTTTAAAGAACATATTAGTGAATGTATTTTTA-CAAA
24869086 AAAA
65 AAAA
24869090 AAAAAAAGCCTTCAATAATC-CCTTAAAATTTTTAAAGAA-A-ATTAGTGAAAGTGTA-TTTTAC
1 AAAAAAAGCCTTCAATAATCTCCTT-AAA-TTTTAAAGAACATATTAGTG-AA-TGTATTTTTAC
24869151 AAAAAAA
62 AAAAAAA
24869158 TGGCTTTAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
68 17 0.29
69 30 0.51
70 12 0.20
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (68 bp):
AAAAAAAGCCTTCAATAATCTCCTTAAATTTTAAAGAACATATTAGTGAATGTATTTTTACAAAA
AAA
Found at i:24869675 original size:128 final size:125
Alignment explanation
Indices: 24869354--24869713 Score: 395
Period size: 128 Copynumber: 2.9 Consensus size: 125
24869344 ATTATTAAAG
* *
24869354 AAAATTATTGAAGGCA--TTTTTTGTAGAAAATGTTTTTAATAATCCCCAATAATTTTTTATCAG
1 AAAATTATTGAAGGCATTTTTTTTGTAGAAAATG-CTTTAATAATCCTCAATAATTTTTTATCAG
* * * ** * * **
24869417 GGGATTATTGAAGGTATTTTTAGTACCAAACACCTTAAACAATTTGCGAAATATTTTTTAA
65 GGGATTATTGAAGGTATTTTTAGTAACAAACACCTTCAATAATTCCCCAAAAATTTTGAAA
* * ** * *
24869478 AAAATTATTGAAGGTATTTTTTTTAT-GAAAAATGGCTTTAATAATCCT-TTTCAATTTTGTATT
1 AAAATTATTGAAGGCATTTTTTTTGTAG-AAAAT-GCTTTAATAATCCTCAAT-AATTTTTTATC
*
24869541 AGGGGATTATTGAAGGTATTTTTAGTAAAAAAACACCTTCAATAATTCCCTCAAAAATTTTGAAA
63 AGGGGATTATTGAAGGTATTTTTAGT-AACAAACACCTTCAATAATTCCC-CAAAAATTTTGAAA
* * * * *
24869606 AAAATTATTAAAGGCATTTTTTTTGTAGAAAATACATTCAATAGTCCTCAATAATTTTTTATCAA
1 AAAATTATTGAAGGCATTTTTTTTGTAGAAAATGC-TTTAATAATCCTCAATAATTTTTTATCAG
* * *
24869671 GGGATTATTGAAGGCATTTTTAGTCACAAACGCCTTCAATAAT
65 GGGATTATTGAAGGTATTTTTAGTAACAAACACCTTCAATAAT
24869714 CTCTTTCAAT
Statistics
Matches: 193, Mismatches: 33, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
124 15 0.08
125 2 0.01
126 58 0.30
127 35 0.18
128 81 0.42
129 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40
Consensus pattern (125 bp):
AAAATTATTGAAGGCATTTTTTTTGTAGAAAATGCTTTAATAATCCTCAATAATTTTTTATCAGG
GGATTATTGAAGGTATTTTTAGTAACAAACACCTTCAATAATTCCCCAAAAATTTTGAAA
Found at i:24871968 original size:21 final size:21
Alignment explanation
Indices: 24871939--24871983 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
24871929 ATTCACTTAA
* *
24871939 TATTTATTTGTTTATTA-TATT
1 TATTGATTTGGTT-TTATTATT
24871960 TATTGATTTGGTTTTATTATT
1 TATTGATTTGGTTTTATTATT
24871981 TAT
1 TAT
24871984 ATTTCATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (21 bp):
TATTGATTTGGTTTTATTATT
Found at i:24872400 original size:40 final size:40
Alignment explanation
Indices: 24872342--24872424 Score: 121
Period size: 40 Copynumber: 2.1 Consensus size: 40
24872332 ACGAGACAAA
* * *
24872342 TGACCTATAGATTTAGATTCGTTGATCTAAATTTCATTAG
1 TGACCCATAGATTCAGATTCGTTGACCTAAATTTCATTAG
* *
24872382 TGACCCATAGATTCAGATTTGTTGACCTGAATTTCATTAG
1 TGACCCATAGATTCAGATTCGTTGACCTAAATTTCATTAG
24872422 TGA
1 TGA
24872425 ATAGAGTGGC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (40 bp):
TGACCCATAGATTCAGATTCGTTGACCTAAATTTCATTAG
Found at i:24887214 original size:8 final size:8
Alignment explanation
Indices: 24887184--24887277 Score: 60
Period size: 8 Copynumber: 12.0 Consensus size: 8
24887174 AGAATTTTGC
24887184 AATAAAAGT
1 AATAAAA-T
24887193 AA-ATAAAT
1 AATA-AAAT
24887201 AATAAAAT
1 AATAAAAT
*
24887209 AGTAAAAT
1 AATAAAAT
24887217 AA-ATAAAT
1 AATA-AAAT
*
24887225 AA-AAACT
1 AATAAAAT
24887232 -A-AAAAT
1 AATAAAAT
24887238 AA-AATAAT
1 AATAA-AAT
24887246 AATAAAAGT
1 AATAAAA-T
24887255 -ATAAAAT
1 AATAAAAT
24887262 AATAAAA-
1 AATAAAAT
24887269 AATTAAAAT
1 AA-TAAAAT
24887278 TAAAATAGAA
Statistics
Matches: 71, Mismatches: 4, Indels: 20
0.75 0.04 0.21
Matches are distributed among these distances:
6 5 0.07
7 10 0.14
8 47 0.66
9 9 0.13
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.23
Consensus pattern (8 bp):
AATAAAAT
Found at i:24887220 original size:24 final size:23
Alignment explanation
Indices: 24887185--24887284 Score: 102
Period size: 24 Copynumber: 4.3 Consensus size: 23
24887175 GAATTTTGCA
24887185 ATAAAAGTAAATAAATAATAAAAT
1 ATAAAA-TAAATAAATAATAAAAT
*
24887209 AGTAAAATAAATAAATAA-AAACT
1 A-TAAAATAAATAAATAATAAAAT
24887232 A-AAAATAAA-ATAATAATAAAAGT
1 ATAAAATAAATA-AATAATAAAA-T
*
24887255 ATAAAAT-AATAAAAAATTAAAAT
1 ATAAAATAAATAAATAA-TAAAAT
24887278 -TAAAATA
1 ATAAAATA
24887285 GAAAAAGGAA
Statistics
Matches: 65, Mismatches: 3, Indels: 17
0.76 0.04 0.20
Matches are distributed among these distances:
20 1 0.02
21 13 0.20
22 9 0.14
23 14 0.22
24 23 0.35
25 5 0.08
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.24
Consensus pattern (23 bp):
ATAAAATAAATAAATAATAAAAT
Found at i:24888087 original size:3 final size:3
Alignment explanation
Indices: 24888079--24888198 Score: 66
Period size: 3 Copynumber: 43.7 Consensus size: 3
24888069 AAGGAAAGAG
* *
24888079 AAT AAT AAT AAT AAT ATT AAT -AT AAT -AC AAT -AT AAT -AT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
24888122 AAT CAT AAT -AT AAT -AT AAT -AT AGT AAT -AT AAT ACT AGT AACA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
* *
24888164 AAT AAT AA- AA- AAT ACT AAT AAT AA- AAA AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
24888199 CAGTAATAGT
Statistics
Matches: 89, Mismatches: 16, Indels: 24
0.69 0.12 0.19
Matches are distributed among these distances:
2 23 0.26
3 64 0.72
4 2 0.02
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:24888115 original size:21 final size:21
Alignment explanation
Indices: 24888089--24888143 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
24888079 AATAATAATA
24888089 ATAATATTAATATAAT-ACAAT
1 ATAATA-TAATATAATCACAAT
*
24888110 ATAATATAATATAATCATAAT
1 ATAATATAATATAATCACAAT
24888131 ATAATATAATATA
1 ATAATATAATATA
24888144 GTAATATAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 9 0.28
21 23 0.72
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAATATAATATAATCACAAT
Found at i:24888120 original size:26 final size:26
Alignment explanation
Indices: 24888083--24888143 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
24888073 AAAGAGAATA
24888083 ATAATAATAATATTAAT-ATAATACAAT
1 ATAAT-ATAATA-TAATCATAATACAAT
*
24888110 ATAATATAATATAATCATAATATAAT
1 ATAATATAATATAATCATAATACAAT
24888136 ATAATATA
1 ATAATATA
24888144 GTAATATAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 4 0.12
26 23 0.72
27 5 0.16
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (26 bp):
ATAATATAATATAATCATAATACAAT
Found at i:24888150 original size:13 final size:14
Alignment explanation
Indices: 24888132--24888161 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
24888122 AATCATAATA
24888132 TAATATAATA-TAG
1 TAATATAATACTAG
24888145 TAATATAATACTAG
1 TAATATAATACTAG
24888159 TAA
1 TAA
24888162 CAAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (14 bp):
TAATATAATACTAG
Found at i:24888154 original size:5 final size:5
Alignment explanation
Indices: 24888083--24888143 Score: 86
Period size: 5 Copynumber: 11.6 Consensus size: 5
24888073 AAAGAGAATA
*
24888083 ATAAT AATAAT ATTAAT ATAAT ACAAT ATAAT ATAAT ATAAT CATAAT
1 ATAAT -ATAAT A-TAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT
24888131 ATAAT ATAAT ATA
1 ATAAT ATAAT ATA
24888144 GTAATATAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
5 36 0.71
6 15 0.29
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:24888586 original size:55 final size:55
Alignment explanation
Indices: 24888473--24888605 Score: 149
Period size: 55 Copynumber: 2.4 Consensus size: 55
24888463 GAATAACTGG
* * * * * ** *
24888473 GATTGAACCACAAGTCTAGAAAATGATTTGGACTGAACTGAGATCGAATGACCAA
1 GATTGAATCATAAGTCTGGAAAACGATTTGAACTGAACCAAGATCGAACGACCAA
* * * *
24888528 GATTGAATCATAAGTCTGGAAAACGATTTGAACTGAGCCAAGATTGAACGATCGA
1 GATTGAATCATAAGTCTGGAAAACGATTTGAACTGAACCAAGATCGAACGACCAA
*
24888583 GATTGAATCATAAGTCTGAAAAA
1 GATTGAATCATAAGTCTGGAAAA
24888606 TGATCTAGAC
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
55 65 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (55 bp):
GATTGAATCATAAGTCTGGAAAACGATTTGAACTGAACCAAGATCGAACGACCAA
Found at i:24888618 original size:55 final size:55
Alignment explanation
Indices: 24888527--24888738 Score: 173
Period size: 55 Copynumber: 3.8 Consensus size: 55
24888517 CGAATGACCA
* * * *
24888527 AGATTGAATCATAAGTCTGGAAAACGAT-TTGAACTGAGCCAAGATTGAACGATCG
1 AGATTGAATCATAAGTCTGAAAAATGATCTAG-ACTGAGTCAAGATTGAACGATCG
* * * *
24888582 AGATTGAATCATAAGTCTGAAAAATGATCTAGACTGAGTCGAGATCGAATGACCG
1 AGATTGAATCATAAGTCTGAAAAATGATCTAGACTGAGTCAAGATTGAACGATCG
* * * * *
24888637 AGATTGAAAT-AGAAGTC-GAAAAAACT-AACTTGGA-TCAAGTCAAGATTGAACGATTG
1 AGATTG-AATCATAAGTCTG-AAAAA-TGATC-TAGACT-GAGTCAAGATTGAACGATCG
* * * * *
24888693 GGATTGAACCATAAGTCTGAAAAATGATATAGATTGAGTCGAGATT
1 AGATTGAATCATAAGTCTGAAAAATGATCTAGACTGAGTCAAGATT
24888739 AAAACTGAGT
Statistics
Matches: 122, Mismatches: 25, Indels: 20
0.73 0.15 0.12
Matches are distributed among these distances:
54 1 0.01
55 79 0.65
56 41 0.34
57 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (55 bp):
AGATTGAATCATAAGTCTGAAAAATGATCTAGACTGAGTCAAGATTGAACGATCG
Found at i:24888653 original size:110 final size:111
Alignment explanation
Indices: 24888473--24888737 Score: 290
Period size: 111 Copynumber: 2.4 Consensus size: 111
24888463 GAATAACTGG
* * * *
24888473 GATTGAACCACAAGTCT-AGAAAATGATTTGGACTGA-ACTGAGATCGAATGACCAAGATTGAAT
1 GATTGAACCATAAGTCTGA-AAAATGATATAGACTGAGTC-GAGATCGAATGACCAAGATTGAAT
* * * * *
24888536 CATAAGTCTG-GAAAAC-GATTTGAA-CTGAGCCAAGATTGAACGATCGA
64 CAGAAGTC-GAAAAAACTAACTTGAATC-AAGCCAAGATTGAACGATCGA
* * *
24888583 GATTGAATCATAAGTCTGAAAAATGATCTAGACTGAGTCGAGATCGAATGACCGAGATTGAAAT-
1 GATTGAACCATAAGTCTGAAAAATGATATAGACTGAGTCGAGATCGAATGACCAAGATTG-AATC
* * * *
24888647 AGAAGTCGAAAAAACTAACTTGGATCAAGTCAAGATTGAACGATTGG
65 AGAAGTCGAAAAAACTAACTTGAATCAAGCCAAGATTGAACGATCGA
*
24888694 GATTGAACCATAAGTCTGAAAAATGATATAGATTGAGTCGAGAT
1 GATTGAACCATAAGTCTGAAAAATGATATAGACTGAGTCGAGAT
24888738 TAAAACTGAG
Statistics
Matches: 131, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
109 1 0.01
110 61 0.47
111 68 0.52
112 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.24
Consensus pattern (111 bp):
GATTGAACCATAAGTCTGAAAAATGATATAGACTGAGTCGAGATCGAATGACCAAGATTGAATCA
GAAGTCGAAAAAACTAACTTGAATCAAGCCAAGATTGAACGATCGA
Found at i:24889548 original size:27 final size:27
Alignment explanation
Indices: 24889518--24889569 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
24889508 TTTTCTCTTT
*
24889518 TTTTTTATTTTT-ATTGTTTTTTTTTCC
1 TTTTTCATTTTTGATT-TTTTTTTTTCC
*
24889545 TTTTTCGTTTTTGATTTTTTTTTTT
1 TTTTTCATTTTTGATTTTTTTTTTT
24889570 GCATACCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 19 0.86
28 3 0.14
ACGTcount: A:0.06, C:0.06, G:0.06, T:0.83
Consensus pattern (27 bp):
TTTTTCATTTTTGATTTTTTTTTTTCC
Found at i:24894760 original size:221 final size:221
Alignment explanation
Indices: 24894380--24894783 Score: 543
Period size: 221 Copynumber: 1.8 Consensus size: 221
24894370 ATATTGAAGA
* * *
24894380 TTTTTTATAAATATTTCAATACACTGGTAATATTTTACAAAAAATCTTCTCACCTAGAAATTTCT
1 TTTTTTATAAATACTCCAATACACTAGTAATATTTTACAAAAAATCTTCTCACCTAGAAATTTCT
* * * *
24894445 TAAAGCATCTCTACTCGGAATACTTTTAGAATCCCATCATTGGATAAAATTTCTTTTCTTCCTAT
66 TAAAGCATCACTACTCGGAATACCTTTAGAATCCCATCATCGGATAAAATTTCTTTTCTTCATAT
* *
24894510 TTTTATTACCTATATTTTAAATATATTAATCAATTTTTAT-TTATTATTATTTTATAACCAGAAA
131 TTTTATTACCTATATTCTAAATATATTAATCAATTTTAATATTATT-TTATTTTATAACCAGAAA
24894574 AGGAAAATTTTTATTTTTATTGAAATT
195 AGGAAAATTTTTATTTTTATTGAAATT
**
24894601 TTTTTTATAAATACTCCAATACACTAGTAATATTTTTTAAAAAATCTTCTCACCTA-AAGATTTC
1 TTTTTTATAAATACTCCAATACACTAGTAATATTTTACAAAAAATCTTCTCACCTAGAA-ATTTC
* *
24894665 TT-AGGCATCACTACTCGGAATACCTTT-GAATCTCATCATCGGATAAAAATTTCTTTTTCTCTC
65 TTAAAGCATCACTACTCGGAATACCTTTAGAATCCCATCATCGGAT-AAAATTTC-TTTTCT-TC
* * **
24894728 AT-TTTTTATTA-CTTTAGTATCTATAT-TATTAATTTATTTTAATATTATTTTATTTT
127 ATATTTTTATTACCTATA-T-TCTAAATATATTAATCAATTTTAATATTATTTTATTTT
24894784 TAAAGTTTTT
Statistics
Matches: 159, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
219 15 0.09
220 36 0.23
221 95 0.60
222 13 0.08
ACGTcount: A:0.33, C:0.14, G:0.06, T:0.47
Consensus pattern (221 bp):
TTTTTTATAAATACTCCAATACACTAGTAATATTTTACAAAAAATCTTCTCACCTAGAAATTTCT
TAAAGCATCACTACTCGGAATACCTTTAGAATCCCATCATCGGATAAAATTTCTTTTCTTCATAT
TTTTATTACCTATATTCTAAATATATTAATCAATTTTAATATTATTTTATTTTATAACCAGAAAA
GGAAAATTTTTATTTTTATTGAAATT
Found at i:24895909 original size:18 final size:18
Alignment explanation
Indices: 24895888--24895956 Score: 56
Period size: 18 Copynumber: 3.9 Consensus size: 18
24895878 TTTTTTTTGT
24895888 TTTTTGTATTTTGTATTA
1 TTTTTGTATTTTGTATTA
*
24895906 TTTTTGGTATTTT-TTTTA
1 TTTTT-GTATTTTGTATTA
**
24895924 TATTTCATATTTTGT-TT-
1 T-TTTTGTATTTTGTATTA
*
24895941 TTTTT-TATTTCGTATT
1 TTTTTGTATTTTGTATT
24895957 TTATTTTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
15 7 0.17
16 5 0.12
17 1 0.02
18 18 0.43
19 11 0.26
ACGTcount: A:0.14, C:0.03, G:0.09, T:0.74
Consensus pattern (18 bp):
TTTTTGTATTTTGTATTA
Found at i:24895967 original size:22 final size:22
Alignment explanation
Indices: 24895913--24895968 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
24895903 TTATTTTTGG
24895913 TATTTTTTTTATATTTCATATTT
1 TATTTTTTTT-TATTTCATATTT
* *
24895936 TGTTTTTTTTTATTTCGTATTT
1 TATTTTTTTTTATTTCATATTT
24895958 TATTTTTTTTT
1 TATTTTTTTTT
24895969 TCTGGACGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 21 0.70
23 9 0.30
ACGTcount: A:0.14, C:0.04, G:0.04, T:0.79
Consensus pattern (22 bp):
TATTTTTTTTTATTTCATATTT
Found at i:24896683 original size:24 final size:24
Alignment explanation
Indices: 24896642--24896719 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 24
24896632 TAAAATCAGT
*
24896642 AAAATAAAA-TAAATAAATAAAATA
1 AAAATAAAATTAGA-AAATAAAATA
* *
24896666 AAAATCAAATTATAAAATAATAA-A
1 AAAATAAAATTAGAAAATAA-AATA
* *
24896690 TAAATAAAATTAGAAAATAAAATT
1 AAAATAAAATTAGAAAATAAAATA
24896714 AAAATA
1 AAAATA
24896720 GAAAAAAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
23 2 0.05
24 37 0.84
25 5 0.11
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.24
Consensus pattern (24 bp):
AAAATAAAATTAGAAAATAAAATA
Found at i:24896713 original size:13 final size:12
Alignment explanation
Indices: 24896642--24896717 Score: 68
Period size: 13 Copynumber: 6.2 Consensus size: 12
24896632 TAAAATCAGT
*
24896642 AAAATAAAATAA
1 AAAATAAAATTA
24896654 ATAAATAAAA-TA
1 A-AAATAAAATTA
*
24896666 AAAATCAAATTA
1 AAAATAAAATTA
24896678 TAAAATAATAA--A
1 -AAAATAA-AATTA
*
24896690 TAAATAAAATTA
1 AAAATAAAATTA
24896702 GAAAATAAAATTA
1 -AAAATAAAATTA
24896715 AAA
1 AAA
24896718 TAGAAAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
10 2 0.04
11 13 0.25
12 10 0.19
13 25 0.48
14 2 0.04
ACGTcount: A:0.74, C:0.01, G:0.01, T:0.24
Consensus pattern (12 bp):
AAAATAAAATTA
Found at i:24896717 original size:35 final size:35
Alignment explanation
Indices: 24896649--24896719 Score: 101
Period size: 35 Copynumber: 2.0 Consensus size: 35
24896639 AGTAAAATAA
*
24896649 AATAAATAAATAAAATAAAAATCAAATTATAAAAT
1 AATAAATAAATAAAATAAAAATCAAAATATAAAAT
24896684 AATAAATAAATAAAATTAGAAAAT-AAAAT-TAAAAT
1 AATAAATAAATAAAA-TA-AAAATCAAAATATAAAAT
24896719 A
1 A
24896720 GAAAAAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
35 22 0.67
36 6 0.18
37 5 0.15
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (35 bp):
AATAAATAAATAAAATAAAAATCAAAATATAAAAT
Found at i:24896730 original size:19 final size:19
Alignment explanation
Indices: 24896694--24896729 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
24896684 AATAAATAAA
*
24896694 TAAAATTAGAAAATAAAAT
1 TAAAATTAGAAAAAAAAAT
24896713 TAAAA-TAGAAAAAAAAA
1 TAAAATTAGAAAAAAAAA
24896730 ACTTACGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (19 bp):
TAAAATTAGAAAAAAAAAT
Done.