Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 160 of 190
Found at i:26039567 original size:13 final size:13
Alignment explanation
Indices: 26039551--26039576 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26039541 AAAAATTTAG
26039551 AAATAAAAATAAA
1 AAATAAAAATAAA
26039564 AAATAAAAATAAA
1 AAATAAAAATAAA
26039577 GTTTAATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAATAAAAATAAA
Found at i:26040609 original size:117 final size:114
Alignment explanation
Indices: 26040403--26040835 Score: 568
Period size: 117 Copynumber: 3.7 Consensus size: 114
26040393 TTTTGTGCAG
* *
26040403 GGAAAATTAATACTTTCAACTTTTCCCCAAAATATTTTTTTG-AAACTTTAATTTCGAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATA-TTTTTTGAAAACTTTAATTTCGAGGAAAAT
* *
26040467 TGATACTTTCAACTTTTCCTTAAAAATTCATTTTTGAAAATTTATTTTTAA
65 TGATACTTTCAAC-TTTCCTCAAAAATTCTTTTTTGAAAATTTATTTTTAA
*
26040518 GAAAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTGGAAAACTTTAATTTCGA-GAGAA
1 GGAAAATTGATACTTTCAACTTTTC-CCAAAAATATTTTTT-GAAAACTTTAATTTCGAGGA-AA
**
26040582 ATTGATACTTTCAACTTTACCTCAAAAAAACCTTTTTTGAAAATTTATTTTTAA
63 ATTGATACTTTCAACTTT-CCTC-AAAAATTCTTTTTTGAAAATTTATTTTTAA
*
26040636 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTTTAATTTCGA-AAGAAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTGAAAACTTTAATTTCGAGGA-AAA
* **
26040700 TTGATACTTTCAACTTTCCTTCAAAAACCTTTTTTTTTTTTTAAATTTATTTTTAA
64 TTGATACTTTCAACTTTCC-TCAAAAA----TTCTTTTTTGAAAATTTATTTTTAA
* * **
26040756 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTGAAAA-TTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTGAAAACTTTAATTTCGAGGAAAAT
26040820 TGATACTTTCAACTTT
65 TGATACTTTCAACTTT
26040836 TTCCCAAAAA
Statistics
Matches: 285, Mismatches: 19, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
115 29 0.10
116 21 0.07
117 76 0.27
118 65 0.23
119 31 0.11
120 63 0.22
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.44
Consensus pattern (114 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAAACTTTAATTTCGAGGAAAATT
GATACTTTCAACTTTCCTCAAAAATTCTTTTTTGAAAATTTATTTTTAA
Found at i:26040865 original size:57 final size:57
Alignment explanation
Indices: 26040403--26040853 Score: 502
Period size: 57 Copynumber: 7.7 Consensus size: 57
26040393 TTTTGTGCAG
* * * * **
26040403 GGAAAATTAATACTTTCAACTTTTCC-CCAAAATATTTTTTTGAAACTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTGAAAATTTATTTTTAA
*
26040460 GGAAAATTGATACTTTCAACTTTTCCTTAAAAAT-TCATTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATAT--TTTTTGAAAATTTATTTTTAA
* * **
26040518 GAAAAATTGATACTTTCAACTTTT-CTCCAAAAATATTTTTTGGAAAACTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCT-CAAAAATATTTTTT-GAAAA-TTTATTTTTAA
* *
26040577 -GAGAAATTGATACTTTCAACTTTACCTCAAAAAAACCTTTTTTGAAAATTTATTTTTAA
1 GGA-AAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTTGAAAATTTATTTTTAA
* **
26040636 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTTTAATTTCGAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAA-TTT-ATTTTTAA
* * **
26040695 AG-AAATTGATACTTTCAAC-TTTCCTTCAAAAACCTTTTTTTTTTTTTAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-TCAAAAA-----TATTTTTTGAAAATTTATTTTTAA
*
26040756 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAA
26040813 GGAAAATTGATACTTTCAACTTTTTCC-CAAAAATATTTTTT
1 GGAAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTTT
26040854 TTTATTTTAT
Statistics
Matches: 336, Mismatches: 35, Indels: 46
0.81 0.08 0.11
Matches are distributed among these distances:
56 1 0.00
57 102 0.30
58 89 0.26
59 80 0.24
60 9 0.03
61 13 0.04
62 27 0.08
63 15 0.04
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.44
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAA
Found at i:26040904 original size:30 final size:31
Alignment explanation
Indices: 26040869--26040942 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
26040859 TTTATTTAAA
* *
26040869 GAAAATAAAATAAT-AAAACAAAATAAAAGT
1 GAAAATAAAATAATAAAAACAAAACAAAAAT
* *
26040899 GAAAATAAAAAAATAAAAATAAAACAAAAAT
1 GAAAATAAAATAATAAAAACAAAACAAAAAT
*
26040930 AAAAATAAAATAA
1 GAAAATAAAATAA
26040943 AGATAAAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 13 0.35
31 24 0.65
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.15
Consensus pattern (31 bp):
GAAAATAAAATAATAAAAACAAAACAAAAAT
Found at i:26040916 original size:6 final size:6
Alignment explanation
Indices: 26040870--26040950 Score: 62
Period size: 6 Copynumber: 13.5 Consensus size: 6
26040860 TTATTTAAAG
* *
26040870 AAAAT- AAAATA ATAAA-A CAAAATA AAAGTGA AAATAAA AAAATA AAAAT-
1 AAAATA AAAATA A-AAATA -AAAATA AAAAT-A AAA-ATA AAAATA AAAATA
* *
26040919 AAAACA AAAATA AAAAT- AAAATA AAGATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAA
26040951 GAATATTAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
5 14 0.23
6 33 0.55
7 13 0.22
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:26040924 original size:36 final size:39
Alignment explanation
Indices: 26040865--26040945 Score: 116
Period size: 36 Copynumber: 2.2 Consensus size: 39
26040855 TTATTTTATT
*
26040865 TAAAGAAAATAAAATAATAAAAC-AAAATAAAAGTGAAAA
1 TAAAGAAAATAAAATAATAAAACAAAAATAAAAAT-AAAA
26040904 TAAA-AAAAT-AAA-AATAAAACAAAAATAAAAATAAAA
1 TAAAGAAAATAAAATAATAAAACAAAAATAAAAATAAAA
26040940 TAAAGA
1 TAAAGA
26040946 TAAAAGAATA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
36 16 0.41
37 14 0.36
38 5 0.13
39 4 0.10
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (39 bp):
TAAAGAAAATAAAATAATAAAACAAAAATAAAAATAAAA
Found at i:26040927 original size:17 final size:17
Alignment explanation
Indices: 26040870--26040950 Score: 74
Period size: 17 Copynumber: 4.5 Consensus size: 17
26040860 TTATTTAAAG
26040870 AAAATAAAATAATAAAAC-
1 AAAAT-AAA-AATAAAACA
* *
26040888 AAAATAAAAGTGAAAATAAA
1 AAAATAAAAAT--AAA-ACA
26040908 AAAATAAAAATAAAACA
1 AAAATAAAAATAAAACA
*
26040925 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAACA
*
26040942 AAGATAAAA
1 AAAATAAAA
26040951 GAATATTAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
16 2 0.04
17 29 0.55
18 11 0.21
19 1 0.02
20 10 0.19
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (17 bp):
AAAATAAAAATAAAACA
Found at i:26040948 original size:11 final size:11
Alignment explanation
Indices: 26040870--26040950 Score: 65
Period size: 11 Copynumber: 6.8 Consensus size: 11
26040860 TTATTTAAAG
26040870 AAAATAAAATAA
1 AAAATAAAAT-A
*
26040882 TAAAACAAAATA
1 -AAAATAAAATA
*
26040894 AAAGTGAAAATAAA
1 AAAAT-AAAAT--A
26040908 AAAATAAAAATA
1 AAAAT-AAAATA
26040920 AAACA-AAAATA
1 AAA-ATAAAATA
26040931 AAAATAAAATA
1 AAAATAAAATA
*
26040942 AAGATAAAA
1 AAAATAAAA
26040951 GAATATTAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
10 1 0.02
11 26 0.46
12 10 0.18
13 10 0.18
14 10 0.18
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:26040955 original size:25 final size:24
Alignment explanation
Indices: 26040870--26040964 Score: 81
Period size: 26 Copynumber: 3.9 Consensus size: 24
26040860 TTATTTAAAG
*
26040870 AAAATAAAATAAT-AAAACAAAAT
1 AAAATAAAATAATAAAAATAAAAT
26040893 AAAAGTGAAAATAA-AAAAATAAAAAT
1 AAAA-T-AAAATAATAAAAAT-AAAAT
*
26040919 AAAA-CAAA-AATAAAAATAAAAT
1 AAAATAAAATAATAAAAATAAAAT
* *
26040941 AAAGATAAAAGAATATTAAATAAA
1 AAA-ATAAAATAATA-AAAATAAA
26040965 CCTAATCTAA
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
22 10 0.17
23 14 0.24
24 4 0.07
25 15 0.25
26 16 0.27
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (24 bp):
AAAATAAAATAATAAAAATAAAAT
Found at i:26041847 original size:23 final size:23
Alignment explanation
Indices: 26041821--26041866 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
26041811 TTCCAACCGC
26041821 ATAAATCAAA-AAATCAAATAAAA
1 ATAAATCAAATAAATCAAA-AAAA
26041844 ATAAATCAAATAAATCAAAAAAA
1 ATAAATCAAATAAATCAAAAAAA
26041867 TTAACAGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (23 bp):
ATAAATCAAATAAATCAAAAAAA
Found at i:26041856 original size:9 final size:9
Alignment explanation
Indices: 26041821--26041867 Score: 57
Period size: 9 Copynumber: 5.7 Consensus size: 9
26041811 TTCCAACCGC
26041821 ATAAATCAA
1 ATAAATCAA
26041830 A-AAATCAA
1 ATAAATCAA
26041838 AT-AA--AA
1 ATAAATCAA
26041844 ATAAATCAA
1 ATAAATCAA
26041853 ATAAATCAA
1 ATAAATCAA
*
26041862 AAAAAT
1 ATAAAT
26041868 TAACAGATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
6 4 0.12
7 2 0.06
8 10 0.30
9 17 0.52
ACGTcount: A:0.72, C:0.09, G:0.00, T:0.19
Consensus pattern (9 bp):
ATAAATCAA
Found at i:26041877 original size:21 final size:21
Alignment explanation
Indices: 26041836--26041901 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
26041826 TCAAAAAATC
* *
26041836 AAATAAAAATAAAT--CAAAT
1 AAATCAAAATAAATAACAGAT
26041855 AAATCAAAA-AAATTAACAGAT
1 AAATCAAAATAAA-TAACAGAT
*
26041876 AAATTAAAATTAAATAACAGAT
1 AAATCAAAA-TAAATAACAGAT
26041898 AAAT
1 AAAT
26041902 TATAACATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 3 0.08
19 9 0.23
21 12 0.31
22 12 0.31
23 3 0.08
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.23
Consensus pattern (21 bp):
AAATCAAAATAAATAACAGAT
Found at i:26041881 original size:12 final size:12
Alignment explanation
Indices: 26041864--26041903 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
26041854 TAAATCAAAA
26041864 AAATTAACAGAT
1 AAATTAACAGAT
26041876 AAATTAA-A-ATT
1 AAATTAACAGA-T
26041887 AAA-TAACAGAT
1 AAATTAACAGAT
26041898 AAATTA
1 AAATTA
26041904 TAACATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (12 bp):
AAATTAACAGAT
Found at i:26041961 original size:3 final size:3
Alignment explanation
Indices: 26041955--26042060 Score: 76
Period size: 3 Copynumber: 33.7 Consensus size: 3
26041945 AGAAAAAAAT
26041955 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A GATA TATA TATAA ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -ATA -AT-A AT-A
* * *
26042004 ATAA ATA CATA A-A ATA AAA ATA A-A AGA A-A AAA CATA TATA ATA ATA
1 AT-A ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -ATA ATA ATA
26042050 ATA ATA ATA AT
1 ATA ATA ATA AT
26042061 GGAAATAAAA
Statistics
Matches: 90, Mismatches: 5, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
2 7 0.08
3 57 0.63
4 25 0.28
5 1 0.01
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:26042112 original size:83 final size:82
Alignment explanation
Indices: 26041940--26042116 Score: 213
Period size: 83 Copynumber: 2.1 Consensus size: 82
26041930 ATATTAACAG
*
26041940 AAAAAAGAAAAAAATATAATAATAATAATAATAATAATAATAATAAAGATATATATATAAATAAA
1 AAAAAAGAAAAAAATATAATAATAATAATAATAATAATAATAATAAAGATATAAATATAAATAAA
*
26042005 TAAATACATAAAATAAA
66 TAAATACAAAAAATAAA
*
26042022 AATAAAAGAAAAAACATAT-ATAATAATAATAATAATAATGGA-AATAAA-ATA-AAATATAAAT
1 AA-AAAAGAAAAAA-ATATAATAATAATAATAATAATAAT-AATAATAAAGATATAAATATAAA-
26042083 GTAAAATATAA-A-AAAATAATAAA
62 -T-AAATA-AATACAAAA-AATAAA
26042106 AAAAAAGAAAA
1 AAAAAAGAAAA
26042117 TAGACTTACC
Statistics
Matches: 84, Mismatches: 3, Indels: 15
0.82 0.03 0.15
Matches are distributed among these distances:
81 8 0.10
82 5 0.06
83 50 0.60
84 19 0.23
85 2 0.02
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.23
Consensus pattern (82 bp):
AAAAAAGAAAAAAATATAATAATAATAATAATAATAATAATAATAAAGATATAAATATAAATAAA
TAAATACAAAAAATAAA
Found at i:26042280 original size:11 final size:11
Alignment explanation
Indices: 26042266--26042315 Score: 55
Period size: 11 Copynumber: 4.2 Consensus size: 11
26042256 ATTTTCATTC
26042266 TTTTTTTATTT
1 TTTTTTTATTT
26042277 TTTTTATTATTATT
1 TTTTT-TTA-T-TT
*
26042291 ATTTTTTTATTA
1 -TTTTTTTATTT
26042303 TTTTTTTATTT
1 TTTTTTTATTT
26042314 TT
1 TT
26042316 GACTAAAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
11 17 0.52
12 4 0.12
13 2 0.06
14 5 0.15
15 5 0.15
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTTATTT
Found at i:26042389 original size:43 final size:44
Alignment explanation
Indices: 26042327--26042445 Score: 134
Period size: 49 Copynumber: 2.6 Consensus size: 44
26042317 ACTAAAGCTA
*
26042327 CTCTAAGT-AGAGGCTCAACGACTTTGA-GAAACATAAATGGCTC
1 CTCTAA-TCAGAGGCTCAACGACTTTGATGAAAAATAAATGGCTC
*
26042370 TTCTAATCAGAGGCTCAACGACTTTGAAAAATTGAAAAATAAATGGCTC
1 CTCTAATCAGAGGCTCAACGACTTTG----A-TGAAAAATAAATGGCTC
* *
26042419 CTCTAATCAGAGGCACCACGACTTTGA
1 CTCTAATCAGAGGCTCAACGACTTTGA
26042446 AAGTAAATTA
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
42 1 0.02
43 23 0.36
45 1 0.02
47 1 0.02
49 38 0.59
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (44 bp):
CTCTAATCAGAGGCTCAACGACTTTGATGAAAAATAAATGGCTC
Found at i:26042431 original size:49 final size:49
Alignment explanation
Indices: 26042354--26042447 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
26042344 ACGACTTTGA
* * *
26042354 GAAACATAAATGGCTCTTCTAATCAGAGGCTCAACGACTTTGAAAAATT
1 GAAAAATAAATGGCTCCTCTAATCAGAGGCACAACGACTTTGAAAAATT
*
26042403 GAAAAATAAATGGCTCCTCTAATCAGAGGCACCACGACTTTGAAA
1 GAAAAATAAATGGCTCCTCTAATCAGAGGCACAACGACTTTGAAA
26042448 GTAAATTACT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.23
Consensus pattern (49 bp):
GAAAAATAAATGGCTCCTCTAATCAGAGGCACAACGACTTTGAAAAATT
Found at i:26042501 original size:41 final size:40
Alignment explanation
Indices: 26042409--26042505 Score: 151
Period size: 40 Copynumber: 2.4 Consensus size: 40
26042399 AATTGAAAAA
*
26042409 TAAATGGCTCCTCTAATCAGAGGCACCACGACTTTGAAAG
1 TAAATTGCTCCTCTAATCAGAGGCACCACGACTTTGAAAG
*
26042449 TAAATTACTCCTCT-ATACAGAGGCACCACGACTTTGGAAAG
1 TAAATTGCTCCTCTAAT-CAGAGGCACCACGACTTT-GAAAG
26042490 TAAATTGCTCCTCTAA
1 TAAATTGCTCCTCTAA
26042506 ACATGTTCCA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
39 2 0.04
40 30 0.59
41 18 0.35
42 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (40 bp):
TAAATTGCTCCTCTAATCAGAGGCACCACGACTTTGAAAG
Found at i:26043559 original size:10 final size:10
Alignment explanation
Indices: 26043546--26043584 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
26043536 TTTTTCATTC
26043546 ATTTTTTTTT
1 ATTTTTTTTT
26043556 ATTTTTTTTTT
1 A-TTTTTTTTT
*
26043567 ATTTTTTTTC
1 ATTTTTTTTT
26043577 ATTTTTTT
1 ATTTTTTT
26043585 CAAGCATAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 17 0.63
11 10 0.37
ACGTcount: A:0.10, C:0.03, G:0.00, T:0.87
Consensus pattern (10 bp):
ATTTTTTTTT
Found at i:26043561 original size:11 final size:11
Alignment explanation
Indices: 26043547--26043584 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
26043537 TTTTCATTCA
26043547 TTTTTTTTTAT
1 TTTTTTTTTAT
26043558 TTTTTTTTTA-
1 TTTTTTTTTAT
*
26043568 TTTTTTTTCAT
1 TTTTTTTTTAT
26043579 TTTTTT
1 TTTTTT
26043585 CAAGCATAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 9 0.36
11 16 0.64
ACGTcount: A:0.08, C:0.03, G:0.00, T:0.89
Consensus pattern (11 bp):
TTTTTTTTTAT
Found at i:26043561 original size:21 final size:21
Alignment explanation
Indices: 26043533--26043582 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
26043523 CCTTGAGTCC
26043533 TCATTTTTCATTCATTTTTTT
1 TCATTTTTCATTCATTTTTTT
* ** *
26043554 TTATTTTTTTTTTATTTTTTT
1 TCATTTTTCATTCATTTTTTT
26043575 TCATTTTT
1 TCATTTTT
26043583 TTCAAGCATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.80
Consensus pattern (21 bp):
TCATTTTTCATTCATTTTTTT
Found at i:26043586 original size:9 final size:10
Alignment explanation
Indices: 26043533--26043584 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
26043523 CCTTGAGTCC
*
26043533 TCATTTTTCAT
1 TCATTTTT-TT
26043544 TCATTTTTTT
1 TCATTTTTTT
*
26043554 TTATTTTTTTT
1 TCA-TTTTTTT
*
26043565 TTATTTTTTT
1 TCATTTTTTT
26043575 TCATTTTTTT
1 TCATTTTTTT
26043585 CAAGCATAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
10 19 0.51
11 18 0.49
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.81
Consensus pattern (10 bp):
TCATTTTTTT
Found at i:26052382 original size:57 final size:56
Alignment explanation
Indices: 26052285--26052787 Score: 515
Period size: 57 Copynumber: 8.7 Consensus size: 56
26052275 TTTGTGCAGA
* * * **
26052285 GAAAATTGATACTTTCAACTTTTCCCCAAAATATTTTTTTGAAACTTTAATTTCGAG
1 GAAAATTGATACTTTCAACTTTTCCCAAAAATA-TTTTTTGAAAATTTATTTTTAAG
* * **
26052342 GAAAATTGATACTTTCAACTTTTCTCCAAAAATATCTTTTGGAAAACTTTAATTTCGAG
1 GAAAATTGATACTTTCAACTTTTC-CCAAAAATAT-TTTTTGAAAA-TTTATTTTTAAG
* * * *
26052401 GGAAATTGATACTTTTAACTTTCCCTCAAAAAAACCTTTTTTGAAAATTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCC-CAAAAATA--TTTTTTGAAAATTTATTTTTAAG
* * * **
26052460 AAAAATTGATACTTTCAACCTTTTTCCAAAAATATTTTTTGAAAACATTAATTTCGAAG
1 GAAAATTGATACTTTCAA-CTTTTCCCAAAAATATTTTTTG-AAA-ATTTATTTTTAAG
* ** *
26052519 G-AAATTGATACTTTCAAC-TTTCCTTCAAAAACCTCTTTTTTTTAAATTTATTTTAAAG
1 GAAAATTGATACTTTCAACTTTTCC--CAAAAA--TATTTTTTGAAAATTTATTTTTAAG
* *
26052577 GAAAATTGATACTTTCAACTTTCCCTCAAAAACTTTTTTTTGAAAATTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCC-CAAAAA-TATTTTTTGAAAATTTATTTTTAAG
* *** *
26052635 AAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTGAAAATTTATTTTTAAA
1 GAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTGAAAATTTATTTTTAAG
****
26052692 GAAAATTGATACTTTCAACTTTTCCTCAAAAACCCGTTTTGAAAATTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTGAAAATTTATTTTTAAG
* *
26052749 GAAAATTGATACTTTTAACTTTTCCAAAAAATATTTTTT
1 GAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTT
26052788 TATTTTATTT
Statistics
Matches: 383, Mismatches: 48, Indels: 31
0.83 0.10 0.07
Matches are distributed among these distances:
56 13 0.03
57 132 0.34
58 105 0.27
59 107 0.28
60 25 0.07
61 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.42
Consensus pattern (56 bp):
GAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAAATTTATTTTTAAG
Found at i:26052527 original size:58 final size:55
Alignment explanation
Indices: 26052287--26052787 Score: 412
Period size: 58 Copynumber: 8.7 Consensus size: 55
26052277 TGTGCAGAGA
* * *
26052287 AAATTGATACTTTCAACTTTTCCCCAAAATATTTTTTTGAAACTTTAATTTCG-AGG
1 AAATTGATACTTTCAACTTTTCCCAAAAATA-TTTTTTGAAA-ATTAATTTTGAAGG
* * *
26052343 AAAATTGATACTTTCAACTTTTCTCCAAAAATATCTTTTGGAAAACTTTAATTTCGAGGG
1 -AAATTGATACTTTCAACTTTTC-CCAAAAATAT-TTTTTGAAAA--TTAATTTTGAAGG
* * * * * *
26052403 AAATTGATACTTTTAACTTTCCCTCAAAAAAACCTTTTTTGAAAATTTATTTTTAAGAA
1 AAATTGATACTTTCAACTTTTCC-CAAAAATA--TTTTTTGAAAATTAATTTTGAAG-G
* *
26052462 AAATTGATACTTTCAACCTTTTTCCAAAAATATTTTTTGAAAACATTAATTTCGAAGG
1 AAATTGATACTTTCAA-CTTTTCCCAAAAATATTTTTTG-AAA-ATTAATTTTGAAGG
* ** * *
26052520 AAATTGATACTTTCAAC-TTTCCTTCAAAAACCTCTTTTTTTTAAATTTATTTTAAAGG
1 AAATTGATACTTTCAACTTTTCC--CAAAAA--TATTTTTTGAAAATTAATTTTGAAGG
* * * * *
26052578 AAAATTGATACTTTCAACTTTCCCTCAAAAACTTTTTTTTGAAAATTTATTTTTAAGAA
1 -AAATTGATACTTTCAACTTTTCC-CAAAAA-TATTTTTTGAAAATTAATTTTGAAG-G
*** * * *
26052637 AAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTGAAAATTTATTTTTAAAGA
1 AAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTGAAAA-TTAATTTTGAAGG
**** * *
26052694 AAATTGATACTTTCAACTTTTCCTCAAAAACCCGTTTTGAAAATTTATTTTTAAGG
1 AAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTGAAAATTAATTTTGAAGG
* *
26052750 AAAATTGATACTTTTAACTTTTCCAAAAAATATTTTTT
1 -AAATTGATACTTTCAACTTTTCCCAAAAATATTTTTT
26052788 TATTTTATTT
Statistics
Matches: 371, Mismatches: 52, Indels: 43
0.80 0.11 0.09
Matches are distributed among these distances:
56 22 0.06
57 106 0.29
58 121 0.33
59 94 0.25
60 27 0.07
61 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.43
Consensus pattern (55 bp):
AAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAAATTAATTTTGAAGG
Found at i:26052538 original size:117 final size:116
Alignment explanation
Indices: 26052287--26052723 Score: 503
Period size: 117 Copynumber: 3.8 Consensus size: 116
26052277 TGTGCAGAGA
* * * * ** *
26052287 AAATTGATACTTTCAACTTTTCCC-CAAAATA-TTTTTTTGAAACTTTAATTTCGAGGAAAATTG
1 AAATTGATACTTTCAAC-TTTCCCTCAAAAAACCTTTTTTGAAAATTTATTTTTAAGAAAAATTG
* * *
26052350 ATACTTTCAACTTTT-CTCCAAAAATATCTTTTGGAAAACTTTAATTTCGAGGG
65 ATACTTTCAACTTTTCCT-CAAAAATAT-TTTTTGAAAACATTAATTTCGAAGG
*
26052403 AAATTGATACTTTTAACTTTCCCTCAAAAAAACCTTTTTTGAAAATTTATTTTTAAGAAAAATTG
1 AAATTGATACTTTCAACTTTCCCTC-AAAAAACCTTTTTTGAAAATTTATTTTTAAGAAAAATTG
*
26052468 ATACTTTCAACCTTTTTC-CAAAAATATTTTTTGAAAACATTAATTTCGAAGG
65 ATACTTTCAA-CTTTTCCTCAAAAATATTTTTTGAAAACATTAATTTCGAAGG
* * ** * *
26052520 AAATTGATACTTTCAACTTTCCTTCAAAAACCTCTTTTTTTTAAATTTATTTTAAAGGAAAATTG
1 AAATTGATACTTTCAACTTTCCCTCAAAAAAC-CTTTTTTGAAAATTTATTTTTAAGAAAAATTG
* * * ** *
26052585 ATACTTTCAACTTTCCCTCAAAAACTTTTTTTTG-AAA-ATTTATTTTTAAGAA
65 ATACTTTCAACTTTTCCTCAAAAA-TATTTTTTGAAAACATTAATTTCGAAG-G
* *
26052637 AAATTGATACTTTCAACTTTTCCTC-AAAAACCCTTTTTGAAAATTTATTTTTAA-AGAAAATTG
1 AAATTGATACTTTCAACTTTCCCTCAAAAAACCTTTTTTGAAAATTTATTTTTAAGA-AAAATTG
26052700 ATACTTTCAACTTTTCCTCAAAAA
65 ATACTTTCAACTTTTCCTCAAAAA
26052724 CCCGTTTTGA
Statistics
Matches: 277, Mismatches: 34, Indels: 21
0.83 0.10 0.06
Matches are distributed among these distances:
115 55 0.20
116 43 0.16
117 120 0.43
118 53 0.19
119 5 0.02
120 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.42
Consensus pattern (116 bp):
AAATTGATACTTTCAACTTTCCCTCAAAAAACCTTTTTTGAAAATTTATTTTTAAGAAAAATTGA
TACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAACATTAATTTCGAAGG
Found at i:26052840 original size:22 final size:20
Alignment explanation
Indices: 26052812--26052883 Score: 65
Period size: 22 Copynumber: 3.4 Consensus size: 20
26052802 AAAATAAAAT
26052812 AATAAAACAAAATAAAAGTGAA
1 AATAAAA-AAAATAAAAGT-AA
*
26052834 AATAAAAAAATAGAAAAGTAA
1 AATAAAAAAA-ATAAAAGTAA
*
26052855 AACAAAATAAAAATAAAA-TAA
1 AA-TAAA-AAAAATAAAAGTAA
26052876 AGATAAAA
1 A-ATAAAA
26052884 GAATATTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
20 1 0.02
21 14 0.33
22 23 0.55
23 4 0.10
ACGTcount: A:0.76, C:0.03, G:0.07, T:0.14
Consensus pattern (20 bp):
AATAAAAAAAATAAAAGTAA
Found at i:26052856 original size:6 final size:5
Alignment explanation
Indices: 26052802--26052897 Score: 63
Period size: 5 Copynumber: 18.6 Consensus size: 5
26052792 TTATTTAAAG
* *
26052802 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAATAG
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAA-AT
* * * *
26052847 AAAAGT AAAAC AAAAT AAAAAT AAAAT AAAGAT AAAAG AATAT TAAAT
1 AAAA-T AAAAT AAAAT -AAAAT AAAAT AAA-AT AAAAT AAAAT AAAAT
26052895 AAA
1 AAA
26052898 CCTAATCTAA
Statistics
Matches: 71, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
3 3 0.04
4 3 0.04
5 42 0.59
6 19 0.27
7 4 0.06
ACGTcount: A:0.75, C:0.02, G:0.06, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:26052856 original size:38 final size:38
Alignment explanation
Indices: 26052797--26052878 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
26052787 TTATTTTATT
*
26052797 TAAAGAAAATAAAATAATAAAACAAAATAAAAGTGAAAA
1 TAAAGAAAATAAAATAATAAAACAAAATAAAAAT-AAAA
*
26052836 TAAA-AAAATAGAAA-AGTAAAACAAAATAAAAATAAAA
1 TAAAGAAAATA-AAATAATAAAACAAAATAAAAATAAAA
26052873 TAAAGA
1 TAAAGA
26052879 TAAAAGAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
37 8 0.21
38 24 0.62
39 7 0.18
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (38 bp):
TAAAGAAAATAAAATAATAAAACAAAATAAAAATAAAA
Found at i:26052881 original size:11 final size:11
Alignment explanation
Indices: 26052802--26052883 Score: 53
Period size: 11 Copynumber: 7.4 Consensus size: 11
26052792 TTATTTAAAG
26052802 AAAATAAAATAAT
1 AAAAT-AAA-AAT
*
26052815 AAAA-CAAAAT
1 AAAATAAAAAT
*
26052825 AAAAGTGAAAAT
1 AAAA-TAAAAAT
* *
26052837 AAAA-AAATAG
1 AAAATAAAAAT
*
26052847 AAAAGT-AAAAC
1 AAAA-TAAAAAT
26052858 AAAATAAAAAT
1 AAAATAAAAAT
*
26052869 AAAATAAAGAT
1 AAAATAAAAAT
26052880 AAAA
1 AAAA
26052884 GAATATTAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
10 15 0.27
11 27 0.49
12 9 0.16
13 4 0.07
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:26053361 original size:19 final size:19
Alignment explanation
Indices: 26053339--26053383 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
26053329 TGGAAATGTC
* *
26053339 GTCGAAAACTGGAAAGTTG
1 GTCGAAAACTGCAAACTTG
* *
26053358 GTCGAAAGCTTCAAACTTG
1 GTCGAAAACTGCAAACTTG
26053377 GTCGAAA
1 GTCGAAA
26053384 TCTTCGTCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.22
Consensus pattern (19 bp):
GTCGAAAACTGCAAACTTG
Found at i:26053760 original size:10 final size:10
Alignment explanation
Indices: 26053732--26053830 Score: 53
Period size: 10 Copynumber: 9.8 Consensus size: 10
26053722 TTCCAGTCGG
26053732 ATAAA-TAAA
1 ATAAATTAAA
* *
26053741 AAAAAATAAA
1 ATAAATTAAA
26053751 ATAAATTAAA
1 ATAAATTAAA
* *
26053761 TTAAATGAAA
1 ATAAATTAAA
* *
26053771 ATAAA-TCAG
1 ATAAATTAAA
*
26053780 ATAAATCAAA
1 ATAAATTAAA
*
26053790 A-AAATTTACAG
1 ATAAA-TTA-AA
26053801 ATAAATTAAA
1 ATAAATTAAA
26053811 ATTAAA-TAACA
1 A-TAAATTAA-A
26053822 GATAAATTA
1 -ATAAATTA
26053831 TAACATATAA
Statistics
Matches: 66, Mismatches: 15, Indels: 15
0.69 0.16 0.16
Matches are distributed among these distances:
9 13 0.20
10 33 0.50
11 14 0.21
12 6 0.09
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (10 bp):
ATAAATTAAA
Found at i:26053801 original size:21 final size:21
Alignment explanation
Indices: 26053762--26053828 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
26053752 TAAATTAAAT
*
26053762 TAAATGAAAATAAAT--CAGA
1 TAAATCAAAATAAATAACAGA
*
26053781 TAAATCAAAA-AAATTTACAGA
1 TAAATCAAAATAAA-TAACAGA
*
26053802 TAAATTAAAATTAAATAACAGA
1 TAAATCAAAA-TAAATAACAGA
26053824 TAAAT
1 TAAAT
26053829 TATAACATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 3 0.08
19 10 0.25
21 13 0.32
22 11 0.28
23 3 0.08
ACGTcount: A:0.63, C:0.06, G:0.06, T:0.25
Consensus pattern (21 bp):
TAAATCAAAATAAATAACAGA
Found at i:26059986 original size:8 final size:7
Alignment explanation
Indices: 26059968--26059999 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
26059958 AAAAATGAGA
26059968 AAAATTT
1 AAAATTT
*
26059975 AAATTTT
1 AAAATTT
26059982 AAAATTT
1 AAAATTT
26059989 AAAATTT
1 AAAATTT
26059996 AAAA
1 AAAA
26060000 AAAAATAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAAATTT
Found at i:26060916 original size:33 final size:33
Alignment explanation
Indices: 26060860--26060922 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
26060850 TTTACATTGT
***
26060860 ATGCATTGCATTTTTTAAGGTCTAGTGCATAAC
1 ATGCATTGCATTTGAGAAGGTCTAGTGCATAAC
*
26060893 ATGCATTGCATTTGAGAATGTCTAGTGCAT
1 ATGCATTGCATTTGAGAAGGTCTAGTGCAT
26060923 GAATTTAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (33 bp):
ATGCATTGCATTTGAGAAGGTCTAGTGCATAAC
Found at i:26061264 original size:44 final size:43
Alignment explanation
Indices: 26061201--26061657 Score: 267
Period size: 44 Copynumber: 10.6 Consensus size: 43
26061191 AAGATTGTCA
*
26061201 AGGAGCTTTATTTATTTTTCAAAAGTTGTTGAGCTTCTATTTAG
1 AGGAGCTTTATTTA-TTTTCAAAAGTTGTTGAGCTTCTACTTAG
* * * *
26061245 AGGAGTTTTATTTAATTTTCAAAAGTTATTAAGTCTT-TACTTAA
1 AGGAGCTTTATTT-ATTTTCAAAAGTTGTTGAG-CTTCTACTTAG
* * *
26061289 ATGAGCCTTATTTATTTTCCAAAGTTGTTGAGCCTT-TACTTAG
1 AGGAGCTTTATTTATTTTCAAAAGTTGTTGAG-CTTCTACTTAG
** * * * *
26061332 AAAAGCTTTATTTATTTTGCAAAAGTCGTTAAGCCTCTATTTAG
1 AGGAGCTTTATTTATTTT-CAAAAGTTGTTGAGCTTCTACTTAG
* ** * *
26061376 ATGAGCTTTATTTATTTTTTAAAGTTGTTGAGCCTT-TGCTTAT
1 AGGAGCTTTATTTATTTTCAAAAGTTGTTGAG-CTTCTACTTAG
* * ** * *
26061419 ATGAGTTTTATTTATTTTACAAAAGTCATTGAGCCTCTGCTTAG
1 AGGAGCTTTATTTATTTT-CAAAAGTTGTTGAGCTTCTACTTAG
* *** *
26061463 AGGAGCCTTATTTACTTTTTC-AAAGTCAATGAGCCTCTACTTAG
1 AGGAGCTTTATTTA--TTTTCAAAAGTTGTTGAGCTTCTACTTAG
* * *
26061507 AGGGGTTTTTATTTATTTTTCAAAAGTTGTTAAG------CTTAG
1 AGGAG-CTTTATTTA-TTTTCAAAAGTTGTTGAGCTTCTACTTAG
* * * *
26061546 AGGAGCCTTATTTATTTGTCAAAA-TCGTTAAGCCTT-TGCTTAG
1 AGGAGCTTTATTTATTT-TCAAAAGTTGTTGAG-CTTCTACTTAG
* * * * * *
26061589 AAGAACCTTATTTAGTTTTTAAAA-TTGTTAAG-TCTCTATTTAG
1 AGGAGCTTTATTTA-TTTTCAAAAGTTGTTGAGCT-TCTACTTAG
* *
26061632 AAGAGTTTTATTTATTTTTCAAAAGT
1 AGGAGCTTTATTTA-TTTTCAAAAGT
26061658 CATGGAGCCT
Statistics
Matches: 326, Mismatches: 65, Indels: 44
0.75 0.15 0.10
Matches are distributed among these distances:
37 10 0.03
38 13 0.04
39 9 0.03
41 1 0.00
42 1 0.00
43 128 0.39
44 140 0.43
45 20 0.06
46 4 0.01
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.45
Consensus pattern (43 bp):
AGGAGCTTTATTTATTTTCAAAAGTTGTTGAGCTTCTACTTAG
Found at i:26061314 original size:87 final size:88
Alignment explanation
Indices: 26061203--26061533 Score: 337
Period size: 87 Copynumber: 3.8 Consensus size: 88
26061193 GATTGTCAAG
* * * *
26061203 GAGCTTTATTTATTTTTCAAAAGTTGTTGAG-CTTCTATTTAGAGGAGTTTTATTTAATTTT-CA
1 GAGCCTTATTTACTTTTCCAAAGTTGTTGAGCCTT-TACTTAGAGGAGTTTTATTT-ATTTTACA
* * * *
26061266 AAAGTTATTAAGTCTTTACTTAAAT
64 AAAGTCATTAAGCCTCTACTTAGAT
** * *
26061291 GAGCCTTATTTA-TTTTCCAAAGTTGTTGAGCCTTTACTTAGAAAAGCTTTATTTATTTTGCAAA
1 GAGCCTTATTTACTTTTCCAAAGTTGTTGAGCCTTTACTTAGAGGAGTTTTATTTATTTTACAAA
* *
26061355 AGTCGTTAAGCCTCTATTTAGAT
66 AGTCATTAAGCCTCTACTTAGAT
* ** * * *
26061378 GAGCTTTATTTA-TTTTTTAAAGTTGTTGAGCCTTTGCTTATATGAGTTTTATTTATTTTACAAA
1 GAGCCTTATTTACTTTTCCAAAGTTGTTGAGCCTTTACTTAGAGGAGTTTTATTTATTTTACAAA
* * *
26061442 AGTCATTGAGCCTCTGCTTAGAG
66 AGTCATTAAGCCTCTACTTAGAT
* *** * * *
26061465 GAGCCTTATTTACTTTTTCAAAGTCAATGAGCCTCTACTTAGAGGGGTTTTTATTTATTTTTCAA
1 GAGCCTTATTTACTTTTCCAAAGTTGTTGAGCCTTTACTTAGAGGAG-TTTTATTTATTTTACAA
26061530 AAGT
65 AAGT
26061534 TGTTAAGCTT
Statistics
Matches: 202, Mismatches: 37, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
86 5 0.02
87 138 0.68
88 39 0.19
89 20 0.10
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (88 bp):
GAGCCTTATTTACTTTTCCAAAGTTGTTGAGCCTTTACTTAGAGGAGTTTTATTTATTTTACAAA
AGTCATTAAGCCTCTACTTAGAT
Found at i:26061444 original size:131 final size:130
Alignment explanation
Indices: 26061204--26061657 Score: 408
Period size: 131 Copynumber: 3.5 Consensus size: 130
26061194 ATTGTCAAGG
* * *
26061204 AGCTTTATTTATTTTTCAAAAGTTGTTGAGCTTCTATTTAGAGGAGTTTTATTTAATTTTCAAAA
1 AGCTTTATTTATTTTTCAAAAGTCGTTGAGCCTCTATTTAGAGGAGTTTTATTT-ATTTTTAAAA
* * * ** *
26061269 GTTATTAAGTCTTTACTTAAATGAGCCTTATTTATTTTCCAAAGTTGTTGAGCCTTTACTTAGAA
65 GTTGTTAAGCCTTTACTTAAATGAGCCTTATTTATTTTCAAAAGTCATTGAGCCTCTACTTAGAA
26061334 A
130 A
* * * * *
26061335 AGCTTTATTTATTTTGCAAAAGTCGTTAAGCCTCTATTTAGATGAGCTTTATTTATTTTTTAAAG
1 AGCTTTATTTATTTTTCAAAAGTCGTTGAGCCTCTATTTAGAGGAGTTTTATTTATTTTTAAAAG
* * * ** * *
26061400 TTGTTGAGCCTTTGCTTATATGAGTTTTATTTATTTTACAAAAGTCATTGAGCCTCTGCTTAGAG
66 TTGTTAAGCCTTTACTTAAATGAGCCTTATTTATTTT-CAAAAGTCATTGAGCCTCTACTTAGAA
*
26061465 G
130 A
* ** * *
26061466 AGCCTTATTTACTTTTTC-AAAGTCAATGAGCCTCTACTTAGAGGGGTTTTTATTTATTTTTCAA
1 AGCTTTATTTA-TTTTTCAAAAGTCGTTGAGCCTCTATTTAGAGGAG-TTTTATTTATTTTT-AA
* * * * * *
26061530 AAGTTGTTAAG------CTTAGAGGAGCCTTATTTATTTGTCAAAA-TCGTTAAGCCTTTGCTTA
63 AAGTTGTTAAGCCTTTACTTAAATGAGCCTTATTTATTT-TCAAAAGTCATTGAGCCTCTACTTA
26061588 GAAGA
127 GAA-A
* * * * *
26061593 A-CCTTATTTAGTTTTT-AAAA-TTGTTAAGTCTCTATTTAGAAGAGTTTTATTTATTTTTCAAA
1 AGCTTTATTTA-TTTTTCAAAAGTCGTTGAGCCTCTATTTAGAGGAGTTTTATTTATTTTT-AAA
26061655 AGT
64 AGT
26061658 CATGGAGCCT
Statistics
Matches: 265, Mismatches: 51, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
124 21 0.08
125 16 0.06
126 34 0.13
127 24 0.09
128 1 0.00
130 39 0.15
131 101 0.38
132 18 0.07
133 11 0.04
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (130 bp):
AGCTTTATTTATTTTTCAAAAGTCGTTGAGCCTCTATTTAGAGGAGTTTTATTTATTTTTAAAAG
TTGTTAAGCCTTTACTTAAATGAGCCTTATTTATTTTCAAAAGTCATTGAGCCTCTACTTAGAAA
Found at i:26061726 original size:8 final size:8
Alignment explanation
Indices: 26061713--26061756 Score: 61
Period size: 8 Copynumber: 5.2 Consensus size: 8
26061703 TGAGTATGCT
26061713 TAAAAAAA
1 TAAAAAAA
26061721 TAAAAAAAA
1 T-AAAAAAA
26061730 TAAAAAAA
1 TAAAAAAA
*
26061738 AATAAAAAA
1 TA-AAAAAA
26061747 TAAAAAAA
1 TAAAAAAA
26061755 TA
1 TA
26061757 TTTGTTGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
8 17 0.53
9 15 0.47
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (8 bp):
TAAAAAAA
Found at i:26061727 original size:7 final size:7
Alignment explanation
Indices: 26061715--26061753 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
26061705 AGTATGCTTA
26061715 AAAAAAT
1 AAAAAAT
26061722 AAAAAA-
1 AAAAAAT
*
26061728 AATAAA-
1 AAAAAAT
26061734 AAAAAAT
1 AAAAAAT
26061741 AAAAAAT
1 AAAAAAT
26061748 AAAAAA
1 AAAAAA
26061754 ATATTTGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 10 0.34
7 19 0.66
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (7 bp):
AAAAAAT
Found at i:26061728 original size:9 final size:9
Alignment explanation
Indices: 26061714--26061754 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
26061704 GAGTATGCTT
26061714 AAAAAAATA
1 AAAAAAATA
26061723 AAAAAAATA
1 AAAAAAATA
26061732 AAAAAAA-A
1 AAAAAAATA
*
26061740 TAAAAAATA
1 AAAAAAATA
26061749 AAAAAA
1 AAAAAA
26061755 TATTTGTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 7 0.24
9 22 0.76
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAAATA
Found at i:26061735 original size:17 final size:18
Alignment explanation
Indices: 26061713--26061756 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 18
26061703 TGAGTATGCT
26061713 TAAAAAAATAA-AAAAAA
1 TAAAAAAATAATAAAAAA
26061730 TAAAAAAA-AATAAAAAA
1 TAAAAAAATAATAAAAAA
26061747 TAAAAAAATA
1 TAAAAAAATA
26061757 TTTGTTGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.08
17 22 0.88
18 1 0.04
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (18 bp):
TAAAAAAATAATAAAAAA
Found at i:26061754 original size:10 final size:10
Alignment explanation
Indices: 26061714--26061746 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
26061704 GAGTATGCTT
26061714 AAAAAAAT-A
1 AAAAAAATAA
26061723 AAAAAAATAA
1 AAAAAAATAA
26061733 AAAAAAATAA
1 AAAAAAATAA
26061743 AAAA
1 AAAA
26061747 TAAAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:26062717 original size:4 final size:4
Alignment explanation
Indices: 26062708--26062739 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
26062698 TTTTTAGTAT
26062708 TTTA TTTA TTTA TTTA TTTA TTATA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTT
26062740 TATAATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:26062723 original size:12 final size:13
Alignment explanation
Indices: 26062696--26062739 Score: 58
Period size: 12 Copynumber: 3.6 Consensus size: 13
26062686 AGCCGAGCCA
*
26062696 ATTT-TTTAGTAT
1 ATTTATTTATTAT
26062708 -TTTATTTATT-T
1 ATTTATTTATTAT
26062719 ATTTATTTATTAT
1 ATTTATTTATTAT
26062732 ATTTATTT
1 ATTTATTT
26062740 TATAATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 4 0.14
12 15 0.54
13 9 0.32
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (13 bp):
ATTTATTTATTAT
Found at i:26062747 original size:21 final size:21
Alignment explanation
Indices: 26062705--26062747 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
26062695 AATTTTTTAG
* *
26062705 TATTTTATTTATTTATTTATT
1 TATTATATTTATTTATTAATT
26062726 TATTATATTTATTT-TATAATT
1 TATTATATTTATTTAT-TAATT
26062747 T
1 T
26062748 TTTTGCATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (21 bp):
TATTATATTTATTTATTAATT
Found at i:26063261 original size:24 final size:25
Alignment explanation
Indices: 26063229--26063279 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
26063219 TTTATTAATT
* *
26063229 AATACAAAAATATA-AAATACAAAA
1 AATACAAAAAAATAGAAAAACAAAA
26063253 AATACAAAAAAATAGAAAAACAAAA
1 AATACAAAAAAATAGAAAAACAAAA
26063278 AA
1 AA
26063280 GGGGGGGTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.78, C:0.08, G:0.02, T:0.12
Consensus pattern (25 bp):
AATACAAAAAAATAGAAAAACAAAA
Found at i:26063343 original size:16 final size:16
Alignment explanation
Indices: 26063322--26063365 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
26063312 CACCACTGGC
26063322 CACCCA-CCACTCTGAT
1 CACCCATCC-CTCTGAT
*
26063338 CACCCATCCCTCTGGT
1 CACCCATCCCTCTGAT
26063354 CACCCATACCCT
1 CACCCAT-CCCT
26063366 GCAAACCTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.20, C:0.52, G:0.07, T:0.20
Consensus pattern (16 bp):
CACCCATCCCTCTGAT
Found at i:26066585 original size:2 final size:2
Alignment explanation
Indices: 26066578--26066607 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
26066568 ATTTTTGCAA
26066578 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26066608 TATCAATAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26067120 original size:23 final size:23
Alignment explanation
Indices: 26067094--26067138 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
26067084 AATATGAAAC
* *
26067094 TTAAATATATTTATTAATAAAAT
1 TTAAATACATCTATTAATAAAAT
* *
26067117 TTAAGTACGTCTATTAATAAAA
1 TTAAATACATCTATTAATAAAA
26067139 CGATGCTAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.42
Consensus pattern (23 bp):
TTAAATACATCTATTAATAAAAT
Found at i:26069045 original size:19 final size:19
Alignment explanation
Indices: 26069017--26069054 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
26069007 TATAGTAAAA
*
26069017 TTTTTAAAAAAATTATTAT
1 TTTTTAAAAAAAATATTAT
*
26069036 TTTTTTAAAAAAATATTAT
1 TTTTTAAAAAAAATATTAT
26069055 GAAATTTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTTAAAAAAAATATTAT
Found at i:26070306 original size:12 final size:12
Alignment explanation
Indices: 26070291--26070345 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 12
26070281 AATAAAGCTG
*
26070291 AAAACCAAAATT
1 AAAATCAAAATT
*
26070303 AAAATTAAAATT
1 AAAATCAAAATT
*
26070315 AAAATCAAAGTT
1 AAAATCAAAATT
**
26070327 AAAATTTAAATT
1 AAAATCAAAATT
*
26070339 AACATCA
1 AAAATCA
26070346 CATTACAATT
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.62, C:0.09, G:0.02, T:0.27
Consensus pattern (12 bp):
AAAATCAAAATT
Found at i:26070345 original size:24 final size:24
Alignment explanation
Indices: 26070291--26070361 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 24
26070281 AATAAAGCTG
*
26070291 AAAACCAAAATTAAAATTAAAATT
1 AAAATCAAAATTAAAATTAAAATT
* *
26070315 AAAATCAAAGTTAAAATTTAAATT
1 AAAATCAAAATTAAAATTAAAATT
* * *
26070339 AACATC-ACATTACAATTAAAATT
1 AAAATCAAAATTAAAATTAAAATT
26070362 GTGGGCTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
23 13 0.33
24 26 0.67
ACGTcount: A:0.59, C:0.10, G:0.01, T:0.30
Consensus pattern (24 bp):
AAAATCAAAATTAAAATTAAAATT
Found at i:26070356 original size:6 final size:6
Alignment explanation
Indices: 26070297--26070340 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
26070287 GCTGAAAACC
* * *
26070297 AAAATT AAAATT AAAATT AAAATC AAAGTT AAAATT TAAATT AA
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AA
26070341 CATCACATTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (6 bp):
AAAATT
Found at i:26070614 original size:44 final size:44
Alignment explanation
Indices: 26070551--26070687 Score: 145
Period size: 44 Copynumber: 3.1 Consensus size: 44
26070541 CAACTCATGC
* *
26070551 AATTTTGAAAAAATGTCTTCTAAATAGAGACATGCAACTTTTGGAA
1 AATTTT-AAAGAAT-TCTTCTAAATAGAGACATGCAACTTTAGGAA
* *
26070597 AATTTTAAAGAATTCTTCTAAACAGA-AGCATACAACTTTAGG-A
1 AATTTTAAAGAATTCTTCTAAATAGAGA-CATGCAACTTTAGGAA
* * * *
26070640 AATTTTAAAGAACTCCTT-TAAATAGAGGCAAGCAACTTTGGGAA
1 AATTTTAAAGAA-TTCTTCTAAATAGAGACATGCAACTTTAGGAA
26070684 AATT
1 AATT
26070688 AAAAAACTCT
Statistics
Matches: 77, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
43 32 0.42
44 33 0.43
45 6 0.08
46 6 0.08
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (44 bp):
AATTTTAAAGAATTCTTCTAAATAGAGACATGCAACTTTAGGAA
Found at i:26070676 original size:43 final size:43
Alignment explanation
Indices: 26070567--26070684 Score: 132
Period size: 43 Copynumber: 2.7 Consensus size: 43
26070557 GAAAAAATGT
* * * *
26070567 CTTCTAAATAGAGACATGCAACTTTTGGAAAATTTTAAAGAATT
1 CTTCTAAATAGAGGCAAGCAACTTTAGG-AAATTTTAAAGAATC
* *
26070611 CTTCTAAACAGAAGCATA-CAACTTTAGGAAATTTTAAAGAACTC
1 CTTCTAAATAGAGGCA-AGCAACTTTAGGAAATTTTAAAGAA-TC
*
26070655 CTT-TAAATAGAGGCAAGCAACTTTGGGAAA
1 CTTCTAAATAGAGGCAAGCAACTTTAGGAAA
26070685 ATTAAAAAAC
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
42 1 0.02
43 35 0.56
44 26 0.42
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (43 bp):
CTTCTAAATAGAGGCAAGCAACTTTAGGAAATTTTAAAGAATC
Found at i:26070824 original size:49 final size:49
Alignment explanation
Indices: 26070771--26070871 Score: 130
Period size: 49 Copynumber: 2.1 Consensus size: 49
26070761 TTAAAAAATG
* *
26070771 TTAAATTTGAATTAGGAAATGGGTTAATTTAAACAAAGGCTCAATAACT
1 TTAAATTTGAATTAAGAAATGGGTTAATTTAAACAAAGGCTCAACAACT
* ** * * *
26070820 TTAAATTTGAATTAAGAAATTGGTTTCTTTAAATAGAGGTTCAACAACT
1 TTAAATTTGAATTAAGAAATGGGTTAATTTAAACAAAGGCTCAACAACT
26070869 TTA
1 TTA
26070872 CAAAAAATTT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.37
Consensus pattern (49 bp):
TTAAATTTGAATTAAGAAATGGGTTAATTTAAACAAAGGCTCAACAACT
Found at i:26072718 original size:12 final size:12
Alignment explanation
Indices: 26072697--26072728 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26072687 GCCAAAACAT
26072697 GTAAAGTAATAG
1 GTAAAGTAATAG
*
26072709 GTAGAGTAATAG
1 GTAAAGTAATAG
26072721 GTAAAGTA
1 GTAAAGTA
26072729 TTGATTTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.28, T:0.25
Consensus pattern (12 bp):
GTAAAGTAATAG
Found at i:26082657 original size:20 final size:21
Alignment explanation
Indices: 26082617--26082663 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
26082607 TTTTTAAAAG
*
26082617 AAAATATTAATTAAAACAAAT
1 AAAATATTAAATAAAACAAAT
* *
26082638 CAAATA-TAAATAAAATAAAT
1 AAAATATTAAATAAAACAAAT
26082658 AAAATA
1 AAAATA
26082664 ATTTATCAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATATTAAATAAAACAAAT
Found at i:26083607 original size:22 final size:22
Alignment explanation
Indices: 26083567--26083608 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
26083557 TTCTTTTTCC
*
26083567 TTTTTTTATTTGTTCATTTTTA
1 TTTTTTTATTTGTTAATTTTTA
26083589 TTTTTTTAATTT-TTAATTTT
1 TTTTTTT-ATTTGTTAATTTT
26083609 ATCCTATGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (22 bp):
TTTTTTTATTTGTTAATTTTTA
Found at i:26084548 original size:38 final size:37
Alignment explanation
Indices: 26084462--26084533 Score: 126
Period size: 38 Copynumber: 1.9 Consensus size: 37
26084452 GAAGAACCAG
*
26084462 CATTAAGCAAATTGTTTTAGGAGAGGAAAGACACTGC
1 CATTTAGCAAATTGTTTTAGGAGAGGAAAGACACTGC
26084499 CATTTACGCAAATTGTTTTAGGAGAGGAAAGACAC
1 CATTTA-GCAAATTGTTTTAGGAGAGGAAAGACAC
26084534 GACTGTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
37 5 0.15
38 28 0.85
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.25
Consensus pattern (37 bp):
CATTTAGCAAATTGTTTTAGGAGAGGAAAGACACTGC
Found at i:26084798 original size:2 final size:2
Alignment explanation
Indices: 26084791--26084816 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26084781 CAATCTAGAA
26084791 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26084817 TACTTAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26091019 original size:22 final size:21
Alignment explanation
Indices: 26090974--26091030 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
26090964 AGATATGTGT
*
26090974 AAAGA-AAAGTGAAAGGAAGA
1 AAAGACAAAGTAAAAGGAAGA
26090994 AAAGACAAAG-AAAAGGTAAGGA
1 AAAGACAAAGTAAAAGG-AA-GA
26091016 AAAGACAAAGTAAAA
1 AAAGACAAAGTAAAA
26091031 AAACCAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
20 10 0.31
21 6 0.19
22 12 0.38
23 4 0.12
ACGTcount: A:0.67, C:0.04, G:0.25, T:0.05
Consensus pattern (21 bp):
AAAGACAAAGTAAAAGGAAGA
Found at i:26103433 original size:25 final size:22
Alignment explanation
Indices: 26103380--26103433 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 22
26103370 CAATTTGAAT
*
26103380 AAATAAGAAAGAAAGGTAAACA
1 AAATAAGAAAAAAAGGTAAACA
* *
26103402 ACATAAGAAAAAAATTGTAGAACAA
1 AAATAAGAAAAAAA-GGTA-AAC-A
26103427 AAATAAG
1 AAATAAG
26103434 CTACTGAGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 12 0.48
23 3 0.12
24 3 0.12
25 7 0.28
ACGTcount: A:0.67, C:0.06, G:0.15, T:0.13
Consensus pattern (22 bp):
AAATAAGAAAAAAAGGTAAACA
Found at i:26104298 original size:16 final size:16
Alignment explanation
Indices: 26104275--26104316 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
26104265 TATATCTAAA
*
26104275 AAAT-AATAGATAATG
1 AAATAAATAAATAATG
* *
26104290 AAATAAATAAATAGTT
1 AAATAAATAAATAATG
26104306 AAATAAATAAA
1 AAATAAATAAA
26104317 AAATACAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (16 bp):
AAATAAATAAATAATG
Found at i:26108888 original size:24 final size:24
Alignment explanation
Indices: 26108856--26108903 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
26108846 CAGCATCTAT
26108856 AGAATTGTAAAAATCAATGCCTTC
1 AGAATTGTAAAAATCAATGCCTTC
26108880 AGAATTGTAAAAATCAATGCCTTC
1 AGAATTGTAAAAATCAATGCCTTC
26108904 TATAGCACGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (24 bp):
AGAATTGTAAAAATCAATGCCTTC
Found at i:26110972 original size:16 final size:16
Alignment explanation
Indices: 26110949--26110990 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
26110939 TATATTTAGA
26110949 AAAT-AATAAATAATC
1 AAATAAATAAATAATC
* *
26110964 AAATAAATAAATAGTT
1 AAATAAATAAATAATC
26110980 AAATAAATAAA
1 AAATAAATAAA
26110991 AATAATACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 4 0.17
16 20 0.83
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (16 bp):
AAATAAATAAATAATC
Found at i:26111819 original size:19 final size:19
Alignment explanation
Indices: 26111792--26111832 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
26111782 TTGTATATTA
*
26111792 TATTATTGCATGATTATCT
1 TATTATTGCATGATTATAT
*
26111811 TATTTTTGCATGATTATAT
1 TATTATTGCATGATTATAT
26111830 TAT
1 TAT
26111833 GCTTGCATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.27, C:0.07, G:0.10, T:0.56
Consensus pattern (19 bp):
TATTATTGCATGATTATAT
Found at i:26111838 original size:19 final size:19
Alignment explanation
Indices: 26111797--26111841 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
26111787 TATTATATTA
* **
26111797 TTGCATGATTATCTTATTT
1 TTGCATGATTATATTATGC
26111816 TTGCATGATTATATTATGC
1 TTGCATGATTATATTATGC
26111835 TTGCATG
1 TTGCATG
26111842 GTATTATTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.22, C:0.11, G:0.16, T:0.51
Consensus pattern (19 bp):
TTGCATGATTATATTATGC
Found at i:26112136 original size:18 final size:18
Alignment explanation
Indices: 26112093--26112139 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
26112083 GATATTTTTT
*
26112093 AAAATAAATTGTTTTCAC
1 AAAAAAAATTGTTTTCAC
* *
26112111 AAATAAAAATTTTTTTTAC
1 AAA-AAAAATTGTTTTCAC
26112130 AAAAAAAATT
1 AAAAAAAATT
26112140 AAATAAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.38
Consensus pattern (18 bp):
AAAAAAAATTGTTTTCAC
Found at i:26119984 original size:6 final size:6
Alignment explanation
Indices: 26119973--26119997 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26119963 GTAATCAAAA
26119973 TATATT TATATT TATATT TATATT T
1 TATATT TATATT TATATT TATATT T
26119998 GTCATAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TATATT
Found at i:26122856 original size:14 final size:14
Alignment explanation
Indices: 26122837--26122864 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26122827 AATAAACATA
26122837 TATTTTATTTTTTT
1 TATTTTATTTTTTT
26122851 TATTTTATTTTTTT
1 TATTTTATTTTTTT
26122865 AATCTCTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
TATTTTATTTTTTT
Found at i:26123935 original size:11 final size:12
Alignment explanation
Indices: 26123911--26123939 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
26123901 TTGAAAACTT
26123911 AAAATGAACAAA
1 AAAATGAACAAA
26123923 AAAATGAACAAA
1 AAAATGAACAAA
26123935 AAAAT
1 AAAAT
26123940 AAAGCATGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.76, C:0.07, G:0.07, T:0.10
Consensus pattern (12 bp):
AAAATGAACAAA
Found at i:26125379 original size:73 final size:73
Alignment explanation
Indices: 26125260--26125395 Score: 204
Period size: 73 Copynumber: 1.9 Consensus size: 73
26125250 AATATTTTTC
*
26125260 AAGATAGAATACACAATCTTTTATGAAAATATGAAAAAAATATTTTTCAAAATTCAACAAAAACA
1 AAGATAGAATACACAATCTTTTATAAAAATATGAAAAAAATATTTTTCAAAATTCAACAAAAACA
26125325 ATGCTTGT
66 ATGCTTGT
* * *
26125333 AAGATAGGAA-ACACAGTC-TTTATTAAAAATATGAAAGAAATATTTTTCAAAATTTAACAAAAA
1 AAGATA-GAATACACAATCTTTTA-TAAAAATATGAAAAAAATATTTTTCAAAATTCAACAAAAA
26125396 TGATGTTTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
72 4 0.07
73 50 0.88
74 3 0.05
ACGTcount: A:0.52, C:0.10, G:0.09, T:0.29
Consensus pattern (73 bp):
AAGATAGAATACACAATCTTTTATAAAAATATGAAAAAAATATTTTTCAAAATTCAACAAAAACA
ATGCTTGT
Found at i:26125494 original size:40 final size:40
Alignment explanation
Indices: 26125427--26125773 Score: 194
Period size: 40 Copynumber: 8.8 Consensus size: 40
26125417 GTAGTTTTTG
* * ** * * *
26125427 TTGAAAAGACAATATTTCCAAGGTAAAAAAGCAATATTTG
1 TTGAAAAGATAACATTTTTAAGATAAAAATGCAATATTTA
* * * * * *
26125467 TTGAAAATATGACATTTTAAAGATAAAAATACAGTATTTG
1 TTGAAAAGATAACATTTTTAAGATAAAAATGCAATATTTA
* * * *
26125507 TTGAAAAAATAACATTTTTAAGAT-TAAATGTAGTATTTA
1 TTGAAAAGATAACATTTTTAAGATAAAAATGCAATATTTA
* * * *
26125546 TTGAAAAGACAACTTTTTTAATAT-AAAA-GCATAGTTTTTA
1 TTGAAAAGATAACATTTTTAAGATAAAAATGCA-A-TATTTA
* * * * *
26125586 TTAAAAAGATGACGTTTTTAAGAT-AAAATGTAATCTTTA
1 TTGAAAAGATAACATTTTTAAGATAAAAATGCAATATTTA
* * *
26125625 TTGAAAAGACAATATTTTTAAGATAAAAATGCAATATTTG
1 TTGAAAAGATAACATTTTTAAGATAAAAATGCAATATTTA
*
26125665 TT--AAACAT-ACTATATTTCTAAGAT-AAAATGCAACCT-TTTA
1 TTGAAAAGATAAC-AT-TTT-TAAGATAAAAATGCAA--TATTTA
* * * * * * *
26125705 TTGAAAATATGACATTTTAAAGATAAAAACGTAGTTTTTCA
1 TTGAAAAGATAACATTTTTAAGATAAAAATGCAATATTT-A
* *
26125746 -TGAAAAGAT-ACATTTCTAAAATAAAAAT
1 TTGAAAAGATAACATTTTTAAGATAAAAAT
26125774 ACACTTTGTT
Statistics
Matches: 238, Mismatches: 54, Indels: 31
0.74 0.17 0.10
Matches are distributed among these distances:
37 1 0.00
38 8 0.03
39 86 0.36
40 121 0.51
41 13 0.05
42 7 0.03
43 2 0.01
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (40 bp):
TTGAAAAGATAACATTTTTAAGATAAAAATGCAATATTTA
Found at i:26125550 original size:79 final size:77
Alignment explanation
Indices: 26125459--26125733 Score: 230
Period size: 79 Copynumber: 3.5 Consensus size: 77
26125449 GTAAAAAAGC
* * **
26125459 AATATTTGTTGAAAATATGACATTTTAAAGATAAAAATACAGTATTTGTTGAAAAAATAACATTT
1 AATATTTATTGAAAAGACAACATTTTAAAGATAAAAATACAGTATTTGTT-AAAAAAT-ACATTT
*
26125524 TTAAGATTAAATGT
64 TTAAGATAAAATGT
* * * * ** * * * *
26125538 AGTATTTATTGAAAAGACAACTTTTTTAATATAAAAGCATAGTTTTTATTAAAAAGATGACGTTT
1 AATATTTATTGAAAAGACAACATTTTAAAGATAAAAATACAGTATTTGTTAAAAA-AT-ACATTT
26125603 TTAAGATAAAATGT
64 TTAAGATAAAATGT
* * * * * *
26125617 AATCTTTATTGAAAAGACAATATTTTTAAGATAAAAATGCAATATTTGTT-AAACATACTATATT
1 AATATTTATTGAAAAGACAACATTTTAAAGATAAAAATACAGTATTTGTTAAAAAATAC-AT-TT
*
26125681 TCTAAGATAAAATGC
64 T-TAAGATAAAATGT
* **
26125696 AACCT-TTTATTGAAAATATGACATTTTAAAGATAAAAA
1 AA--TATTTATTGAAAAGACAACATTTTAAAGATAAAAA
26125734 CGTAGTTTTT
Statistics
Matches: 154, Mismatches: 36, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
76 2 0.01
77 3 0.02
78 11 0.07
79 109 0.71
80 28 0.18
81 1 0.01
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (77 bp):
AATATTTATTGAAAAGACAACATTTTAAAGATAAAAATACAGTATTTGTTAAAAAATACATTTTT
AAGATAAAATGT
Found at i:26125564 original size:39 final size:39
Alignment explanation
Indices: 26125499--26125648 Score: 133
Period size: 39 Copynumber: 3.8 Consensus size: 39
26125489 ATAAAAATAC
* * * *
26125499 AGTATTTGTTGAAAAAATAACATTTTTAAGATTAAATGT
1 AGTATTTATTGAAAAGACAACTTTTTTAAGATTAAATGT
* *
26125538 AGTATTTATTGAAAAGACAACTTTTTTAATA-TAAAAGCAT
1 AGTATTTATTGAAAAGACAACTTTTTTAAGATTAAATG--T
* * ** * *
26125578 AGTTTTTATTAAAAAGATGACGTTTTTAAGATAAAATGT
1 AGTATTTATTGAAAAGACAACTTTTTTAAGATTAAATGT
* *
26125617 AATCTTTATTGAAAAGACAA-TATTTTTAAGAT
1 AGTATTTATTGAAAAGACAACT-TTTTTAAGAT
26125649 AAAAATGCAA
Statistics
Matches: 87, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
38 5 0.06
39 52 0.60
40 26 0.30
41 4 0.05
ACGTcount: A:0.43, C:0.05, G:0.12, T:0.40
Consensus pattern (39 bp):
AGTATTTATTGAAAAGACAACTTTTTTAAGATTAAATGT
Found at i:26125583 original size:20 final size:21
Alignment explanation
Indices: 26125560--26125613 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
26125550 AAAGACAACT
26125560 TTTTTAATATAAAAGCAT-A-G
1 TTTTTAATATAAAAG-ATGACG
*
26125580 TTTTTATTA-AAAAGATGACG
1 TTTTTAATATAAAAGATGACG
*
26125600 TTTTTAAGATAAAA
1 TTTTTAATATAAAA
26125614 TGTAATCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 2 0.07
19 6 0.21
20 16 0.57
21 4 0.14
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.41
Consensus pattern (21 bp):
TTTTTAATATAAAAGATGACG
Found at i:26125764 original size:79 final size:77
Alignment explanation
Indices: 26125478--26125771 Score: 180
Period size: 79 Copynumber: 3.7 Consensus size: 77
26125468 TGAAAATATG
* * * * * * *
26125478 ACATTTTAAAGATAAAAATACAGTATTTGTTGAAAAAATAACATTTTTAAGATTAAATGTAGTAT
1 ACATTTTAAAGATAAAAACACAGTATTT-ATGAAAAGATAACATTTCTAAGATAAAATGAACT-T
26125543 TTATTGAAAAGACA
64 TTATTGAAAAGACA
* * * * * * * * * *
26125557 ACTTTTTTAATATAAAAGCATAGTTTTTATTAAAAAGATGACGTTTTTAAGATAAAATGTAA-TC
1 ACATTTTAAAGATAAAAACACAGTATTTA-TGAAAAGATAACATTTCTAAGATAAAATG-AACT-
26125621 TTTATTGAAAAGACA
63 TTTATTGAAAAGACA
* * ** * * * * *
26125636 ATATTTTTAAGATAAAAATGCAATATTTGT-TAAACATACTATATTTCTAAGATAAAATGCAACC
1 ACATTTTAAAGATAAAAACACAGTATTTATGAAAAGATA--ACATTTCTAAGATAAAATG-AA-C
* **
26125700 TTTTATTGAAAATATG
62 TTTTATTGAAAAGACA
** * *
26125716 ACATTTTAAAGATAAAAACGTAGTTTTTCATGAAAAGAT-ACATTTCTAAAATAAAA
1 ACATTTTAAAGATAAAAACACAGTATTT-ATGAAAAGATAACATTTCTAAGATAAAA
26125772 ATACACTTTG
Statistics
Matches: 161, Mismatches: 46, Indels: 16
0.72 0.21 0.07
Matches are distributed among these distances:
77 5 0.03
78 1 0.01
79 113 0.70
80 35 0.22
81 2 0.01
82 5 0.03
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.37
Consensus pattern (77 bp):
ACATTTTAAAGATAAAAACACAGTATTTATGAAAAGATAACATTTCTAAGATAAAATGAACTTTT
ATTGAAAAGACA
Found at i:26129451 original size:162 final size:160
Alignment explanation
Indices: 26129198--26130529 Score: 920
Period size: 162 Copynumber: 8.2 Consensus size: 160
26129188 ATTGGACACA
** * * * * * *
26129198 TTTAATATCATGTAAAAGGAGCTA-CATAAATTGTTAAAACAGAACA-ATAATTGTAAATTTGCA
1 TTTAATATCATGT-ATTGAAGCTATC-TAAATTGTTAAAACA-AAAATATAACTATAAAATTACA
* * * ** * * *
26129261 TTTTTACCTTTTAACATTGCAAAAAGTCCTAAACAGACATAAATCATAACTTATTCATACATATC
63 TTTTTGCCTTTTAATAGTATAAAAAGTCCTAAAAAGACATAAA-CATAACTTTTTCACACATATC
* * * *
26129326 AAATAATGGAAATCAAGTTCAATCATTCGAACAAG
127 -AATCATGGAAACCAAGTTCAATCATTCAAAAAAG
* * * *
26129361 TTTAATATAATGTATTTAAGCTACCTAAATTGTTAAAACAAAAATATAACTGTAAAATTACATTT
1 TTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAACAAAAATATAACTATAAAATTACATTT
* * ** *
26129426 TTGCC-TTTAATGGTATAATAAAGTCCTAAAAAAACATAAATGGT-ACTTTTTTCACATATATCA
66 TTGCCTTTTAATAGTATAA-AAAGTCCTAAAAAGACATAAA-CATAAC-TTTTTCACACATATCA
** * * * *
26129489 ATTGTGGAAACCAAGTTCAATCATTTAGATAGG
128 ATCATGGAAACCAAGTTCAATCATTCAAAAAAG
* * * * *
26129522 TTTAATATCATATATTGAAGCTATCTAAATTGTAAAAACATAAATATAACTACAAAATTATATTT
1 TTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAACAAAAATATAACTATAAAATTACATTT
* * * * * * * *
26129587 TTACCCTTTAAATCTGTA-ACAAAGTCTTAAAAAAACATAAACAGTAACTTTTTCACATATAT-T
66 TT-GCCTTTTAAT-AGTATAAAAAGTCCTAAAAAGACATAAACA-TAACTTTTTCACACATATCA
* *
26129650 AGCTATGGAAACCAAGTTCAATCATTCATAAAAG
128 ATC-ATGGAAACCAAGTTCAATCATTCAAAAAAG
* ** * * * *
26129684 TTT-ATATCAT-TGATTGAAGCTATCTTAACAGTTAAAATAGAATAATA-AAC-ACAAATTTGCA
1 TTTAATATCATGT-ATTGAAGCTATCTAAATTGTTAAAACA-AA-AATATAACTATAAAATTACA
* * * * * ** *
26129745 TTTTGGCCTTTTAACAGCATAAAAAAAAATGCTAAACGGACATAAACAGTAACTATTTCACACAT
63 TTTTTGCCTTTTAATAG--T-ATAAAAAGTCCTAAAAAGACATAAACA-TAACTTTTTCACACAT
* * * *
26129810 ATTAATCGTGAAAACCAAGTTCAATCATTTAAAAAAG
124 ATCAATCATGGAAACCAAGTTCAATCATTCAAAAAAG
* * * * *
26129847 TTTAATATCATGTATTTAAACTATCTAAATTGTTAAAACATAAATATGACTATAAAATTATATTT
1 TTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAACAAAAATATAACTATAAAATTACATTT
* ** * **
26129912 TTGCCTTTTAAAAGCGTAACAAAGTCTTAAAAAGACATAAATGGTAACTTTTTCACACATATCAA
66 TTGCCTTTTAATAGTATAA-AAAGTCCTAAAAAGACATAAA-CATAACTTTTTCACACATATCAA
* * * *
26129977 -C-TGTGAAAACCAAGTTTAATAATTCGAATAAG
129 TCATG-G-AAACCAAGTTCAATCATTCAAAAAAG
* * * *
26130009 TTTAATATCATGTATTGAAGCTATTTAAATTGTTAAAACATAATAATA-AAC-ACAAATTTGCAT
1 TTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAACA-AA-AATATAACTATAAAATTACAT
* * * * * ** * *
26130072 TTTAGCCTATTAATGGCACAAAAAAAGTGTTAAACAGATATAAACAATAACTTTTTCACACATAT
64 TTTTGCCTTTTAATAG--TATAAAAAGTCCTAAAAAGACATAAAC-ATAACTTTTTCACACATAT
* * *
26130137 CAATCATGAAAACTAAGTTCAATCATTCAAAAAAT
126 CAATCATGGAAACCAAGTTCAATCATTCAAAAAAG
* * * * *
26130172 TTTAATATCATGTATTTAAGCTCTCTAAACTGTTAAAACATAAATATAACTATAAAATGACATTT
1 TTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAACAAAAATATAACTATAAAATTACATTT
* * * * * *
26130237 TTACC-CTTAACAGCATAATAAAGTCTTAAAAAGACATAAATAATAACTTTTTCACACATATCAA
66 TTGCCTTTTAATAGTATAA-AAAGTCCTAAAAAGACATAAA-CATAACTTTTTCACACATATCAA
** * ** * ** *
26130301 TTGTGAAAATTAAGTTCAATTATTCGGACAAG
129 TCATGGAAACCAAGTTCAATCATTCAAAAAAG
* * * * * * * * * *
26130333 TTTAAAATTATGTATTGAAACTGTCTAAACTGTTAAAATGGAATAATA-AA-TGTAAATTTACAC
1 TTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAA--CAAAAATATAACTATAAAATTACAT
* * * * * *
26130396 TTTGGCCTTTTAATA--ACAAAAAATCCTAAATAGACATAAACGATAATTTTTTCATACATATCA
64 TTTTGCCTTTTAATAGTATAAAAAGTCCTAAAAAGACATAAAC-ATAACTTTTTCACACATATCA
* * * *
26130459 ATCATGCAAACTAAATTCAATCATTCAAATAAG
128 ATCATGGAAACCAAGTTCAATCATTCAAAAAAG
* * * * * *
26130492 CTTAATATCATATATAGAAGCTATATAAACTATTAAAA
1 TTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAA
26130530 TAGAATAATA
Statistics
Matches: 918, Mismatches: 210, Indels: 86
0.76 0.17 0.07
Matches are distributed among these distances:
159 91 0.10
160 17 0.02
161 258 0.28
162 278 0.30
163 208 0.23
164 63 0.07
165 3 0.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (160 bp):
TTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAACAAAAATATAACTATAAAATTACATTT
TTGCCTTTTAATAGTATAAAAAGTCCTAAAAAGACATAAACATAACTTTTTCACACATATCAATC
ATGGAAACCAAGTTCAATCATTCAAAAAAG
Found at i:26129569 original size:161 final size:161
Alignment explanation
Indices: 26129281--26130370 Score: 921
Period size: 162 Copynumber: 6.7 Consensus size: 161
26129271 TTAACATTGC
* * * * ** * *
26129281 AAAAAGTCCTAAACAGACATAAATCA-TAACTTATTCATACATATCAAATAATGGAAATCAAGTT
1 AAAAAGTCTTAAAAAGACATAAA-CAGTAACTTTTTCACACATATC-AATTGTGAAAACCAAGTT
* * * * *
26129345 CAATCA-TTCGAACAAGTTTAATATAATGTATTTAAGCTACCTAAATTGTTAAAACAAAAATATA
64 CAATCATTTAGAA-AAGTTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAACATAAATATA
** *
26129409 ACTGTAAAATTACATTTTTGCCTTTAATGGTATA
128 ACTACAAAATTACATTTTTGCCTTTAATGGCATA
* * * ** * *
26129443 ATAAAGTCCTAAAAAAACATAAATGGT-ACTTTTTTCACATATATCAATTGTGGAAACCAAGTTC
1 AAAAAGTCTTAAAAAGACATAAACAGTAAC-TTTTTCACACATATCAATTGTGAAAACCAAGTTC
* * * *
26129507 AATCATTTAGATAGGTTTAATATCATATATTGAAGCTATCTAAATTGTAAAAACATAAATATAAC
65 AATCATTTAGAAAAGTTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAACATAAATATAAC
* * *
26129572 TACAAAATTATATTTTTACCCTTTAAAT--CTGTA
130 TACAAAATTACATTTTT-GCCTTT-AATGGC-ATA
* * * * ** * *
26129605 ACAAAGTCTTAAAAAAACATAAACAGTAACTTTTTCACATATATTAGCTATGGAAACCAAGTTCA
1 AAAAAGTCTTAAAAAGACATAAACAGTAACTTTTTCACACATATCAATTGTGAAAACCAAGTTCA
* * * **
26129670 ATCATTCATAAAAGTTT-ATATCAT-TGATTGAAGCTATCTTAACAGTT-AAA-ATAGAATAATA
66 ATCATTTAGAAAAGTTTAATATCATGT-ATTGAAGCTATCTAAATTGTTAAAACATA-AAT-AT-
* * * **
26129731 AAC-ACAAATTTGCATTTTGGCCTTTTAACAGCATAAA
127 AACTACAAAATTACATTTTTGCC-TTTAATGGCAT--A
* ** * * *
26129768 AAAAAATGC-TAAACGGACATAAACAGTAACTATTTCACACATATTAATCGTGAAAACCAAGTTC
1 AAAAAGT-CTTAAAAAGACATAAACAGTAACTTTTTCACACATATCAATTGTGAAAACCAAGTTC
* * * *
26129832 AATCATTTAAAAAAGTTTAATATCATGTATTTAAACTATCTAAATTGTTAAAACATAAATATGAC
65 AATCATTTAGAAAAGTTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAACATAAATATAAC
* * ** *
26129897 TATAAAATTATATTTTTGCCTTTTAAAAGCGTA
130 TACAAAATTACATTTTTGCC-TTTAATGGCATA
* ** * *
26129930 ACAAAGTCTTAAAAAGACATAAATGGTAACTTTTTCACACATATCAACTGTGAAAACCAAGTTTA
1 AAAAAGTCTTAAAAAGACATAAACAGTAACTTTTTCACACATATCAATTGTGAAAACCAAGTTCA
* * *
26129995 AT-AATTCGAATAAGTTTAATATCATGTATTGAAGCTATTTAAATTGTTAAAACAT-AATAATAA
66 ATCATTTAGAA-AAGTTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAACATAAAT-AT-A
* * * *
26130058 AC-ACAAATTTGCATTTTAGCCTATTAATGGCACAA
128 ACTACAAAATTACATTTTTGCCT-TTAATGGCA-TA
* * * * ** *
26130093 AAAAAGTGTTAAACAGATATAAACAATAACTTTTTCACACATATCAATCATGAAAACTAAGTTCA
1 AAAAAGTCTTAAAAAGACATAAACAGTAACTTTTTCACACATATCAATTGTGAAAACCAAGTTCA
* * * * * *
26130158 ATCATTCAAAAAATTTTAATATCATGTATTTAAGCTCTCTAAACTGTTAAAACATAAATATAACT
66 ATCATTTAGAAAAGTTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAACATAAATATAACT
* * * * **
26130223 ATAAAATGACATTTTTACCCTTAACAGCATA
131 ACAAAATTACATTTTTGCCTTTAATGGCATA
* * * **
26130254 ATAAAGTCTTAAAAAGACATAAATAATAACTTTTTCACACATATCAATTGTGAAAATTAAGTTCA
1 AAAAAGTCTTAAAAAGACATAAACAGTAACTTTTTCACACATATCAATTGTGAAAACCAAGTTCA
* ** * * * * * *
26130319 ATTATTCGGACAAGTTTAAAATTATGTATTGAAACTGTCTAAACTGTTAAAA
66 ATCATTTAGAAAAGTTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAA
26130371 TGGAATAATA
Statistics
Matches: 745, Mismatches: 152, Indels: 63
0.78 0.16 0.07
Matches are distributed among these distances:
159 3 0.00
160 11 0.01
161 235 0.32
162 243 0.33
163 186 0.25
164 57 0.08
165 7 0.01
166 3 0.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (161 bp):
AAAAAGTCTTAAAAAGACATAAACAGTAACTTTTTCACACATATCAATTGTGAAAACCAAGTTCA
ATCATTTAGAAAAGTTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAACATAAATATAACT
ACAAAATTACATTTTTGCCTTTAATGGCATA
Found at i:26129857 original size:325 final size:323
Alignment explanation
Indices: 26129473--26130529 Score: 1155
Period size: 325 Copynumber: 3.3 Consensus size: 323
26129463 AAATGGTACT
* ** * * * * *
26129473 TTTTTCACATATATCAATTGTGGAAACCAAGTTCAATCATTTAGATAGGTTTAATATCATATATT
1 TTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTCAAAAAAGTTTAATATCATATATT
* * *
26129538 GAAGCTATCTAAATTGTAAAAACATAAATATAACTACAAAATTATATTTTTACCCTTTAAATCTG
66 GAAGCTATCTAAATTGTTAAAACATAAATATAACTATAAAATTATATTTTTACCCTTTAAAGC-G
* * * * * * *
26129603 TAACAAAGTCTTAAAAAAACATAAACAGTAACTTTTTCACATATATTAGCTATGGAAACCAAGTT
130 TAACAAAGTCTTAAAAAGACATAAATAGTAACTTTTTCACACATATCAACTGTGAAAACCAAGTT
*
26129668 CAATCATTCATAAAAGTTT-ATATCAT-TGATTGAAGCTATCTTAACAGTTAAAATAGAATAATA
195 CAATAATTCA-AAAAGTTTAATATCATGT-ATTGAAGCTATCTTAACAGTTAAAATAGAATAATA
*
26129731 AACACAAATTTGCATTTTGGCCTTTTAACAGCATAAAAAAAAATGCTAAACGGACATAAACAGTA
258 AACACAAATTTGCATTTTGGCCTTTTAA-AGCATAAAAAAAAATGCTAAACAGACATAAACAGTA
26129796 AC
322 AC
* * * * *
26129798 TATTTCACACATATTAATCGTGAAAACCAAGTTCAATCATTTAAAAAAGTTTAATATCATGTATT
1 TTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTCAAAAAAGTTTAATATCATATATT
* * * * *
26129863 TAAACTATCTAAATTGTTAAAACATAAATATGACTATAAAATTATATTTTTGCCTTTTAAAAGCG
66 GAAGCTATCTAAATTGTTAAAACATAAATATAACTATAAAATTATATTTTTACCCTTT-AAAGCG
*
26129928 TAACAAAGTCTTAAAAAGACATAAATGGTAACTTTTTCACACATATCAACTGTGAAAACCAAGTT
130 TAACAAAGTCTTAAAAAGACATAAATAGTAACTTTTTCACACATATCAACTGTGAAAACCAAGTT
* * * *
26129993 TAATAATTCGAATAAGTTTAATATCATGTATTGAAGCTAT-TTAA-ATTGTTAAAACATAATAAT
195 CAATAATTC-AAAAAGTTTAATATCATGTATTGAAGCTATCTTAACA--GTTAAAATAGAATAAT
* * * * * * * *
26130056 AAACACAAATTTGCATTTTAGCCTATTAATGGCA-CAAAAAAAGTGTTAAACAGATATAAACAAT
257 AAACACAAATTTGCATTTTGGCCTTTTAA-AGCATAAAAAAAAATGCTAAACAGACATAAACAGT
26130120 AAC
321 AAC
* * *
26130123 TTTTTCACACATATCAATCATGAAAACTAAGTTCAATCATTCAAAAAATTTTAATATCATGTATT
1 TTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTCAAAAAAGTTTAATATCATATATT
* * * * * *
26130188 TAAGCTCTCTAAACTGTTAAAACATAAATATAACTATAAAATGACATTTTTACCC-TTAACAGCA
66 GAAGCTATCTAAATTGTTAAAACATAAATATAACTATAAAATTATATTTTTACCCTTTAA-AGCG
* * * **
26130252 TAATAAAGTCTTAAAAAGACATAAATAATAACTTTTTCACACATATCAATTGTGAAAATTAAGTT
130 TAACAAAGTCTTAAAAAGACATAAATAGTAACTTTTTCACACATATCAACTGTGAAAACCAAGTT
* * * * * * * * * *
26130317 CAATTATTCGGACAAGTTTAAAATTATGTATTGAAACTGTCTAAACTGTTAAAATGGAATAATAA
195 CAATAATTC-AAAAAGTTTAATATCATGTATTGAAGCTATCTTAACAGTTAAAATAGAATAATAA
*** * * * * *
26130382 ATGTAAATTTACACTTTGGCCTTTT--A--ATAACAAAAAATCCTAAATAGACATAAAC-GATAA
259 ACACAAATTTGCATTTTGGCCTTTTAAAGCATAAAAAAAAATGCTAAACAGACATAAACAG-TAA
*
26130442 T
323 C
* * * * * * *
26130443 TTTTTCATACATATCAATCATGCAAACTAAATTCAATCATTCAAATAAGCTTAATATCATATATA
1 TTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTCAAAAAAGTTTAATATCATATATT
* * *
26130508 GAAGCTATATAAACTATTAAAA
66 GAAGCTATCTAAATTGTTAAAA
26130530 TAGAATAATA
Statistics
Matches: 618, Mismatches: 103, Indels: 27
0.83 0.14 0.04
Matches are distributed among these distances:
319 1 0.00
320 98 0.16
323 2 0.00
324 130 0.21
325 319 0.52
326 67 0.11
327 1 0.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (323 bp):
TTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTCAAAAAAGTTTAATATCATATATT
GAAGCTATCTAAATTGTTAAAACATAAATATAACTATAAAATTATATTTTTACCCTTTAAAGCGT
AACAAAGTCTTAAAAAGACATAAATAGTAACTTTTTCACACATATCAACTGTGAAAACCAAGTTC
AATAATTCAAAAAGTTTAATATCATGTATTGAAGCTATCTTAACAGTTAAAATAGAATAATAAAC
ACAAATTTGCATTTTGGCCTTTTAAAGCATAAAAAAAAATGCTAAACAGACATAAACAGTAAC
Found at i:26133009 original size:7 final size:7
Alignment explanation
Indices: 26132997--26133021 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26132987 GCCTTAGAAT
26132997 TTTAAGA
1 TTTAAGA
26133004 TTTAAGA
1 TTTAAGA
26133011 TTTAAGA
1 TTTAAGA
26133018 TTTA
1 TTTA
26133022 TCCTGTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (7 bp):
TTTAAGA
Found at i:26133187 original size:28 final size:25
Alignment explanation
Indices: 26133138--26133188 Score: 75
Period size: 28 Copynumber: 1.9 Consensus size: 25
26133128 TTGTTATATT
26133138 TATAATTTAAAATATATATTTGTTA
1 TATAATTTAAAATATATATTTGTTA
26133163 TATAATTTAATTATATATATATTTGT
1 TATAATTTAA--A-ATATATATTTGT
26133189 AAATATTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 10 0.43
27 1 0.04
28 12 0.52
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (25 bp):
TATAATTTAAAATATATATTTGTTA
Found at i:26133423 original size:4 final size:4
Alignment explanation
Indices: 26133414--26133442 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
26133404 TAGTTATATT
26133414 TTAA TTAA TTAA TTAA TTAA TTAA TTAA T
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA T
26133443 CAATGATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:26138032 original size:18 final size:19
Alignment explanation
Indices: 26138011--26138056 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
26138001 TTCACTTATT
**
26138011 AAATTTTATATTTTAA-TA
1 AAATTTTATAAATTAATTA
*
26138029 AAATTTTTTAAATTAATTA
1 AAATTTTATAAATTAATTA
26138048 AAATTTTAT
1 AAATTTTAT
26138057 CACAAAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
AAATTTTATAAATTAATTA
Found at i:26139362 original size:3 final size:3
Alignment explanation
Indices: 26139354--26139408 Score: 56
Period size: 3 Copynumber: 17.0 Consensus size: 3
26139344 GTTTTTAAAA
* *
26139354 ATT ATT ATT ATT ATT ATT ATT ACT CTT ATTT ATTT ATT ATTT ATT ATTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT A-TT ATT A-TT ATT A-TT
26139403 ATT ATT
1 ATT ATT
26139409 TATAATATCA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
3 32 0.71
4 13 0.29
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:26139395 original size:7 final size:7
Alignment explanation
Indices: 26139354--26139411 Score: 68
Period size: 7 Copynumber: 8.3 Consensus size: 7
26139344 GTTTTTAAAA
26139354 ATTA-TT
1 ATTATTT
26139360 ATTA-TT
1 ATTATTT
26139366 ATTA-TT
1 ATTATTT
26139372 ATTACTCTT
1 ATTA-T-TT
26139381 ATTTATTT
1 A-TTATTT
26139389 ATTATTT
1 ATTATTT
26139396 ATTATTT
1 ATTATTT
26139403 ATTATTT
1 ATTATTT
26139410 AT
1 AT
26139412 AATATCATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
6 16 0.33
7 22 0.46
8 3 0.06
9 4 0.08
10 3 0.06
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.67
Consensus pattern (7 bp):
ATTATTT
Found at i:26142470 original size:8 final size:8
Alignment explanation
Indices: 26142457--26142495 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
26142447 TTTGAATGAT
26142457 TTTTTTTA
1 TTTTTTTA
26142465 TTTTTTTA
1 TTTTTTTA
*
26142473 TTTGTTTGAA
1 TTT-TTT-TA
26142483 TTTTTTTA
1 TTTTTTTA
26142491 TTTTT
1 TTTTT
26142496 CCTTTGAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 17 0.63
9 6 0.22
10 4 0.15
ACGTcount: A:0.13, C:0.00, G:0.05, T:0.82
Consensus pattern (8 bp):
TTTTTTTA
Found at i:26142476 original size:26 final size:25
Alignment explanation
Indices: 26142443--26142495 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
26142433 TTGATTTGAC
*
26142443 TTTTTTTGAATGATTTTTTTTATTT
1 TTTTTTTGAATGAATTTTTTTATTT
**
26142468 TTTTATTTGTTTGAATTTTTTTATTT
1 TTTT-TTTGAATGAATTTTTTTATTT
26142494 TT
1 TT
26142496 CCTTTGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (25 bp):
TTTTTTTGAATGAATTTTTTTATTT
Found at i:26142489 original size:21 final size:21
Alignment explanation
Indices: 26142465--26142532 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 21
26142455 ATTTTTTTTA
*
26142465 TTTTT-TTATTTGTTTGAATT
1 TTTTTATTTTTTGTTTGAATT
**
26142485 TTTTTATTTTTCCTTTGAAATT
1 TTTTTATTTTTTGTTTG-AATT
* * *
26142507 TTTTTAATTTTTGATTGATTT
1 TTTTTATTTTTTGTTTGAATT
26142528 TTTTT
1 TTTTT
26142533 GAATTTAACT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
20 5 0.13
21 16 0.42
22 17 0.45
ACGTcount: A:0.16, C:0.03, G:0.07, T:0.74
Consensus pattern (21 bp):
TTTTTATTTTTTGTTTGAATT
Found at i:26142524 original size:22 final size:21
Alignment explanation
Indices: 26142473--26142538 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 21
26142463 TATTTTTTTA
26142473 TTTGTTTGAATTTTTTT-ATT
1 TTTGTTTGAATTTTTTTAATT
*
26142493 TTTCCTTTGAAATTTTTTTAATT
1 TTT-GTTTG-AATTTTTTTAATT
* *
26142516 TTTGATTGATTTTTTTTGAATT
1 TTTGTTTGAATTTTTTT-AATT
26142538 T
1 T
26142539 AACTATTTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
20 3 0.08
21 12 0.32
22 17 0.45
23 6 0.16
ACGTcount: A:0.18, C:0.03, G:0.09, T:0.70
Consensus pattern (21 bp):
TTTGTTTGAATTTTTTTAATT
Found at i:26143262 original size:23 final size:22
Alignment explanation
Indices: 26143201--26143262 Score: 52
Period size: 23 Copynumber: 2.6 Consensus size: 22
26143191 GTCCTTCTTC
*
26143201 ATTTTTTATTTATCTTTTTTTGTG
1 ATTTTTT-TTT-TCTTTTTTTATG
* * *
26143225 ATTGATTTTTGTCTTTTTTTATT
1 ATT-TTTTTTTTCTTTTTTTATG
26143248 ATTTTTTCTTTTCTT
1 ATTTTTT-TTTTCTT
26143263 CATCTCTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
22 3 0.10
23 19 0.63
24 5 0.17
25 3 0.10
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.76
Consensus pattern (22 bp):
ATTTTTTTTTTCTTTTTTTATG
Found at i:26153993 original size:9 final size:9
Alignment explanation
Indices: 26153975--26154045 Score: 61
Period size: 9 Copynumber: 7.9 Consensus size: 9
26153965 CCTTTAATTA
*
26153975 TTATTGTTG
1 TTATTATTG
26153984 TTATTATTG
1 TTATTATTG
*
26153993 TTATTGTTG
1 TTATTATTG
* *
26154002 TTGTTGTTG
1 TTATTATTG
* *
26154011 TTGTTGTTG
1 TTATTATTG
* *
26154020 TTGTTATTA
1 TTATTATTG
*
26154029 TTATTATTA
1 TTATTATTG
26154038 TTATTATT
1 TTATTATT
26154046 ATTACCACCA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 56 1.00
ACGTcount: A:0.15, C:0.00, G:0.17, T:0.68
Consensus pattern (9 bp):
TTATTATTG
Found at i:26153998 original size:6 final size:6
Alignment explanation
Indices: 26153975--26154045 Score: 61
Period size: 6 Copynumber: 11.8 Consensus size: 6
26153965 CCTTTAATTA
* * * * * *
26153975 TTATTG TTGTTA TTATTG TTATTG TTGTTG TTGTTG TTGTTG TTGTTG
1 TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG
* * *
26154023 TTATTA TTATTA TTATTA TTATT
1 TTATTG TTATTG TTATTG TTATT
26154046 ATTACCACCA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 58 1.00
ACGTcount: A:0.15, C:0.00, G:0.17, T:0.68
Consensus pattern (6 bp):
TTATTG
Found at i:26154002 original size:3 final size:3
Alignment explanation
Indices: 26153978--26154024 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
26153968 TTAATTATTA
* * *
26153978 TTG TTG TTA TTA TTG TTA TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
26154025 ATTATTATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.06, C:0.00, G:0.26, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:26154061 original size:3 final size:3
Alignment explanation
Indices: 26154023--26154049 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
26154013 GTTGTTGTTG
26154023 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
26154050 CCACCATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26160342 original size:29 final size:29
Alignment explanation
Indices: 26160304--26160362 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
26160294 ATCTTATCTT
26160304 TGGCAGTTCATATTTATCTTCAATATTTG
1 TGGCAGTTCATATTTATCTTCAATATTTG
26160333 TGGCAGTTCATATTTATCTTCAATATTTG
1 TGGCAGTTCATATTTATCTTCAATATTTG
26160362 T
1 T
26160363 ATTTAATAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (29 bp):
TGGCAGTTCATATTTATCTTCAATATTTG
Found at i:26167370 original size:73 final size:73
Alignment explanation
Indices: 26167228--26167387 Score: 189
Period size: 73 Copynumber: 2.2 Consensus size: 73
26167218 TAGACAATAT
* * * ***
26167228 CGATCGATCCCTCTTGGATCGAATCGATTGGTTTTCCATCAAGTAGCCAAATTAAGGGAAAATGT
1 CGATCGATCCCCCTTGGATCGAATCAATTGGCTTTCCATCAAGTAGCCAAATTAAGGGAAAAACA
26167293 TGAGGAAC
66 TGAGGAAC
* * *
26167301 CGATCGATCCCCCTTGGA-CTGCATCAATTGGCTTTCTATCCAA-TAGCCAAATTAAGTGAAAAA
1 CGATCGATCCCCCTTGGATC-GAATCAATTGGCTTTCCAT-CAAGTAGCCAAATTAAGGGAAAAA
26167364 CATGAGGAAC
64 CATGAGGAAC
* *
26167374 TGATCAATCCCCCT
1 CGATCGATCCCCCT
26167388 ATGGTCCTGA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
72 1 0.01
73 70 0.95
74 3 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (73 bp):
CGATCGATCCCCCTTGGATCGAATCAATTGGCTTTCCATCAAGTAGCCAAATTAAGGGAAAAACA
TGAGGAAC
Found at i:26177407 original size:14 final size:13
Alignment explanation
Indices: 26177371--26177415 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 13
26177361 TATGCATTAG
*
26177371 AAAAATATAAACAA
1 AAAAATA-AAATAA
26177385 AATAAATAAAATTAA
1 AA-AAATAAAA-TAA
26177400 AAAAATAAAATAA
1 AAAAATAAAATAA
26177413 AAA
1 AAA
26177416 TCTTAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 6 0.21
14 13 0.46
15 9 0.32
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (13 bp):
AAAAATAAAATAA
Found at i:26177410 original size:19 final size:20
Alignment explanation
Indices: 26177372--26177414 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
26177362 ATGCATTAGA
26177372 AAAATATAAACAAAATAAAT
1 AAAATATAAACAAAATAAAT
26177392 AAAAT-TAAA-AAAATAAAAT
1 AAAATATAAACAAAAT-AAAT
26177411 AAAA
1 AAAA
26177415 ATCTTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.23
19 12 0.55
20 5 0.23
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (20 bp):
AAAATATAAACAAAATAAAT
Found at i:26178391 original size:19 final size:18
Alignment explanation
Indices: 26178358--26178393 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
26178348 TGATAGAGGT
26178358 TTGGTTAGAGGTTGGTGC
1 TTGGTTAGAGGTTGGTGC
*
26178376 TTGGTATAGGGGTTGGTG
1 TTGGT-TAGAGGTTGGTG
26178394 AAGGTGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.11, C:0.03, G:0.47, T:0.39
Consensus pattern (18 bp):
TTGGTTAGAGGTTGGTGC
Found at i:26183445 original size:19 final size:19
Alignment explanation
Indices: 26183421--26183489 Score: 68
Period size: 19 Copynumber: 3.4 Consensus size: 19
26183411 AAAAGCCCAA
26183421 AATTTTAATTTGATTTTTT
1 AATTTTAATTTGATTTTTT
26183440 AATTTTAATTTTGATTTTGGTTTT
1 AATTTTAA-TTTGA--TT--TTTT
*
26183464 AATTCTAATTTGGA-TTTTT
1 AATTTTAATTT-GATTTTTT
26183483 AATTTTA
1 AATTTTA
26183490 TTAATCAAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
19 18 0.43
20 5 0.12
21 1 0.02
22 2 0.05
23 3 0.07
24 13 0.31
ACGTcount: A:0.26, C:0.01, G:0.09, T:0.64
Consensus pattern (19 bp):
AATTTTAATTTGATTTTTT
Found at i:26183472 original size:24 final size:24
Alignment explanation
Indices: 26183436--26183481 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
26183426 TAATTTGATT
* *
26183436 TTTTAATTTTAATTTTGATTTTGG
1 TTTTAATTCTAATTTGGATTTTGG
26183460 TTTTAATTCTAATTTGGATTTT
1 TTTTAATTCTAATTTGGATTTT
26183482 TAATTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.22, C:0.02, G:0.11, T:0.65
Consensus pattern (24 bp):
TTTTAATTCTAATTTGGATTTTGG
Found at i:26183481 original size:18 final size:19
Alignment explanation
Indices: 26183441--26183486 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
26183431 TGATTTTTTA
* *
26183441 ATTTTAATTTTGATTTTGG
1 ATTTTAATTCTGAATTTGG
26183460 -TTTTAATTCT-AATTTGG
1 ATTTTAATTCTGAATTTGG
26183477 ATTTTTAATT
1 A-TTTTAATT
26183487 TTATTAATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 6 0.26
18 9 0.39
19 8 0.35
ACGTcount: A:0.24, C:0.02, G:0.11, T:0.63
Consensus pattern (19 bp):
ATTTTAATTCTGAATTTGG
Found at i:26184399 original size:14 final size:14
Alignment explanation
Indices: 26184357--26184401 Score: 58
Period size: 13 Copynumber: 3.4 Consensus size: 14
26184347 CCGATCATAG
26184357 ATTTTTTCTTTTC-
1 ATTTTTTCTTTTCT
*
26184370 CTTTTTTCTTTT-T
1 ATTTTTTCTTTTCT
*
26184383 ATTTTTTATTTTCT
1 ATTTTTTCTTTTCT
26184397 ATTTT
1 ATTTT
26184402 GATTTTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 21 0.78
14 6 0.22
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (14 bp):
ATTTTTTCTTTTCT
Found at i:26184732 original size:21 final size:21
Alignment explanation
Indices: 26184707--26184757 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
26184697 TCAAATTTAA
*
26184707 TTGCATGATTTATTATATAT-T
1 TTGCATGATTTATGAT-TATCT
26184728 TTGCATGA-TTATGATTATCT
1 TTGCATGATTTATGATTATCT
26184748 TTGCATGATT
1 TTGCATGATT
26184758 GTTGCATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 3 0.11
20 15 0.56
21 9 0.33
ACGTcount: A:0.25, C:0.08, G:0.14, T:0.53
Consensus pattern (21 bp):
TTGCATGATTTATGATTATCT
Found at i:26188953 original size:20 final size:22
Alignment explanation
Indices: 26188928--26188980 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
26188918 AGGTTTTCAT
26188928 AAAAAATGAAT-T-AAATGATA
1 AAAAAATGAATATAAAATGATA
* *
26188948 AAAAAATAAATATAAAAATGGTA
1 AAAAAATGAATAT-AAAATGATA
26188971 AAAAAATGAA
1 AAAAAATGAA
26188981 AATGAATGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 10 0.37
21 1 0.04
23 16 0.59
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (22 bp):
AAAAAATGAATATAAAATGATA
Found at i:26190989 original size:37 final size:38
Alignment explanation
Indices: 26190889--26190994 Score: 124
Period size: 37 Copynumber: 2.8 Consensus size: 38
26190879 AAATAATAAA
* *
26190889 ATAGTACATGCACTCCATCTTATGTACATCTTAATTAG
1 ATAGTACATGCACTCCATCTTATGCACATCTCAATTAG
* * ** *
26190927 ATAGTATATGCATTTTATCTCATGCACATCTCAA-TAG
1 ATAGTACATGCACTCCATCTTATGCACATCTCAATTAG
* *
26190964 ATAGTGCATGCACTCCATCTTATGCATATCT
1 ATAGTACATGCACTCCATCTTATGCACATCT
26190995 TAATGGTGTG
Statistics
Matches: 54, Mismatches: 14, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
37 27 0.50
38 27 0.50
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (38 bp):
ATAGTACATGCACTCCATCTTATGCACATCTCAATTAG
Found at i:26193309 original size:15 final size:15
Alignment explanation
Indices: 26193291--26193339 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
26193281 TGCTTTGCTA
26193291 AAAAAAAGAAAAAAG
1 AAAAAAAGAAAAAAG
* **
26193306 AAAAAAATAAGGAAG
1 AAAAAAAGAAAAAAG
26193321 --AAAAAG-AAAAAG
1 AAAAAAAGAAAAAAG
26193333 AAAAAAA
1 AAAAAAA
26193340 CTTTTTGTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 5
0.70 0.16 0.14
Matches are distributed among these distances:
12 4 0.15
13 5 0.19
14 5 0.19
15 12 0.46
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (15 bp):
AAAAAAAGAAAAAAG
Found at i:26196532 original size:83 final size:84
Alignment explanation
Indices: 26196405--26196944 Score: 294
Period size: 82 Copynumber: 6.6 Consensus size: 84
26196395 CACAATTTTT
* * * * * *
26196405 AAGACCTTCAAGCAAAAATCTC-AAATTTTTAAATGATTTTCAAAGATCTTTGAGTAAAACC-AA
1 AAGACCTCCGAGCAAAAATCTCAAAATTTTTAAATGATTTCCAAAGACCTTCGAGCAAAACCTAA
26196468 AAATTTTAAATGATTTTCA
66 AAATTTTAAATGATTTTCA
* * *
26196487 AAGACCGT-CGGGCAAAAATCTCAAAATTTTTAAATGATTTCCAAAGACCTTCGTGCAAAACCTC
1 AAGACC-TCCGAGCAAAAATCTCAAAATTTTTAAATGATTTCCAAAGACCTTCGAGCAAAACCTA
**
26196551 AATTTTTTAAATGATTTTCA
65 AAAATTTTAAATGATTTTCA
* * * ** *
26196571 AAGACCTCCGATCAAAAA-CTTAAAA-TTTTAAATGGTTTCCAGTGACCTAT-GAGCAAAACCTC
1 AAGACCTCCGAGCAAAAATCTCAAAATTTTTAAATGATTTCCAAAGACCT-TCGAGCAAAACCTA
** * * *
26196633 TTACTTTTGAATGATTTCCA
65 AAAATTTTAAATGATTTTCA
* ** * * * ** *
26196653 AAGATCTCTAAGC-AAAACCTC--AATTTTTGAATGATTTCCAAAGACC-TCTAGGCAAAATTTT
1 AAGACCTCCGAGCAAAAATCTCAAAATTTTTAAATGATTTCCAAAGACCTTCGA-GCAAAACCTA
* * * *
26196714 AGATTTTTAAATAATTTCCA
65 AAAATTTTAAATGATTTTCA
* * * * * *
26196734 AAGACCTCCCGA-C-AAAACCTC--AATTTTTGAATGATTTCCAAAGACTTTCAAGCAAAA-TTT
1 AAGACCT-CCGAGCAAAAATCTCAAAATTTTTAAATGATTTCCAAAGACCTTCGAGCAAAACCTA
** * ** *
26196794 TTAATCTTTGAATGA-TACCC
65 AAAAT-TTTAAATGATTTTCA
** * * * * *
26196814 AAGACCTCCGAG-AAAAAT-TTTAGATTTTTGAATGATTTTCCAAAGACCTTCAAGCAAAA-TTT
1 AAGACCTCCGAGCAAAAATCTCAAAATTTTTAAATGA-TTTCCAAAGACCTTCGAGCAAAACCTA
* * * * *
26196876 CAAGTTTTTAGTAATTTTCA
65 AAAATTTTAAATGATTTTCA
* * * * * *
26196896 AAGACCTTCGGGC-AAAATCT-TAAATTTTTAGATGATTTCCCATGACCTT
1 AAGACCTCCGAGCAAAAATCTCAAAATTTTTAAATGATTTCCAAAGACCTT
26196945 TCGGTAAAAA
Statistics
Matches: 365, Mismatches: 73, Indels: 41
0.76 0.15 0.09
Matches are distributed among these distances:
79 6 0.02
80 22 0.06
81 126 0.35
82 135 0.37
83 44 0.12
84 32 0.09
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (84 bp):
AAGACCTCCGAGCAAAAATCTCAAAATTTTTAAATGATTTCCAAAGACCTTCGAGCAAAACCTAA
AAATTTTAAATGATTTTCA
Found at i:26196692 original size:40 final size:40
Alignment explanation
Indices: 26196405--26196778 Score: 245
Period size: 41 Copynumber: 9.1 Consensus size: 40
26196395 CACAATTTTT
* *
26196405 AAGACCT-TCAAGCAAAAATCTCAAATTTTTAAATGATTTTCA
1 AAGACCTCT-AAGC-AAAACCTC-AATTTTTAAATGATTTCCA
* * * * ** * *
26196447 AAGATCTTTGAGTAAAACCAAAAATTTTAAATGATTTTCA
1 AAGACCTCTAAGCAAAACCTCAATTTTTAAATGATTTCCA
** *
26196487 AAGACCGTC-GGGCAAAAATCTCAAAATTTTTAAATGATTTCCA
1 AAGACC-TCTAAGC-AAAACCTC--AATTTTTAAATGATTTCCA
*
26196530 AAGACCTTCGT--GCAAAACCTCAATTTTTTAAATGATTTTCA
1 AAGACC-TC-TAAGCAAAACCTCAA-TTTTTAAATGATTTCCA
** * * * * *
26196571 AAGACCTCCGATCAAAAACTTAAAATTTTAAATGGTTTCCA
1 AAGACCTCTAAGC-AAAACCTCAATTTTTAAATGATTTCCA
** * * * * *
26196612 GTGACCTATGAGCAAAACCTCTTACTTTTGAATGATTTCCA
1 AAGACCTCTAAGCAAAACCTC-AATTTTTAAATGATTTCCA
* *
26196653 AAGATCTCTAAGCAAAACCTCAATTTTTGAATGATTTCCA
1 AAGACCTCTAAGCAAAACCTCAATTTTTAAATGATTTCCA
* ** * *
26196693 AAGACCTCTAGGCAAAATTTTAGATTTTTAAATAATTTCCA
1 AAGACCTCTAAGCAAAACCTCA-ATTTTTAAATGATTTCCA
** *
26196734 AAGACCTC-CCGACAAAACCTCAATTTTTGAATGATTTCCA
1 AAGACCTCTAAG-CAAAACCTCAATTTTTAAATGATTTCCA
26196774 AAGAC
1 AAGAC
26196779 TTTCAAGCAA
Statistics
Matches: 260, Mismatches: 58, Indels: 30
0.75 0.17 0.09
Matches are distributed among these distances:
40 91 0.35
41 118 0.45
42 23 0.09
43 28 0.11
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.32
Consensus pattern (40 bp):
AAGACCTCTAAGCAAAACCTCAATTTTTAAATGATTTCCA
Found at i:26196789 original size:81 final size:78
Alignment explanation
Indices: 26196511--26196935 Score: 264
Period size: 81 Copynumber: 5.2 Consensus size: 78
26196501 AAAATCTCAA
* ** ** * * *
26196511 AATTTTTAAATGATTTCCAAAGACCTTCGTGCAAAACCTCAATTTTTTAAATGATTTTCAAAGAC
1 AATTTTTGAATGATTTCCAAAGA-CTTCAAGCAAAATTTTAA-TTTTT-AATAATTTCCAAAGAC
* * *
26196576 CTCCGATCAAAAACTTA
63 CTCCGAGC-AAAACCTC
* * * ** * * * * *
26196593 AAATTTTAAATGGTTTCCAGTGACCTAT-GAGCAAAACCTCTTACTTTTGAATGATTTCCAAAGA
1 AATTTTTGAATGATTTCCAAAGA-CT-TCAAGCAAAA--TTTTAATTTTTAATAATTTCCAAAGA
* **
26196657 TCTCTAAGCAAAACCTC
62 CCTCCGAGCAAAACCTC
* *
26196674 AATTTTTGAATGATTTCCAAAGACCTCTAGGCAAAATTTTAGATTTTTAAATAATTTCCAAAGAC
1 AATTTTTGAATGATTTCCAAAGACTTC-AAGCAAAATTTTA-ATTTTT-AATAATTTCCAAAGAC
26196739 CTCCCGA-CAAAACCTC
63 CT-CCGAGCAAAACCTC
* * * *
26196755 AATTTTTGAATGATTTCCAAAGACTTTCAAGCAAAATTTTTAATCTTTGAATGA-TACCCAAGAC
1 AATTTTTGAATGATTTCCAAAGAC-TTCAAGCAAAA-TTTTAAT-TTTTAATAATTTCCAAAGAC
* ** *
26196819 CTCCGAGAAAAATTTT
63 CTCCGAGCAAAACCTC
* * *
26196835 AGATTTTTGAATGATTTTCCAAAGACCTTCAAGCAAAATTTCAAGTTTTTAGTAATTTTCAAAGA
1 A-ATTTTTGAATGA-TTTCCAAAGA-CTTCAAGCAAAATTTTAA-TTTTTAATAATTTCCAAAGA
* * * *
26196900 CCTTCGGGCAAAATCTTA
62 CCTCCGAGCAAAA-CCTC
26196918 AATTTTT-AGATGATTTCC
1 AATTTTTGA-ATGATTTCC
26196936 CATGACCTTT
Statistics
Matches: 271, Mismatches: 53, Indels: 39
0.75 0.15 0.11
Matches are distributed among these distances:
79 9 0.03
80 21 0.08
81 121 0.45
82 108 0.40
83 9 0.03
84 3 0.01
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (78 bp):
AATTTTTGAATGATTTCCAAAGACTTCAAGCAAAATTTTAATTTTTAATAATTTCCAAAGACCTC
CGAGCAAAACCTC
Found at i:26196831 original size:121 final size:122
Alignment explanation
Indices: 26196511--26196862 Score: 299
Period size: 122 Copynumber: 2.9 Consensus size: 122
26196501 AAAATCTCAA
* * * * **
26196511 AATTTTTAAATGATTTCCAAAGACCTTCGT--GCAAAACCTCAATTTTTTAAATGATTTTCAAAG
1 AATTTTTGAATGATTTCCAAAGATC-TC-TAAGCAAAACCTCAA-TCTTTGAATGATTACCAAAG
** * * * * ** **
26196574 ACCTCCGATCAAAAA-CTTAAAATTTTAAATG-GTTTCCAGTGACCT-ATGAGCAAAACCTC
63 ACCT-CGAGGAAAAATTTTAGATTTTTAAATGAATTTCCAAAGACCTCCCGA-CAAAACCTC
* * * *
26196633 TTACTTTTGAATGATTTCCAAAGATCTCTAAGCAAAACCTCAATTTTTGAATGATTTCCAAAGAC
1 -AATTTTTGAATGATTTCCAAAGATCTCTAAGCAAAACCTCAATCTTTGAATGATTACCAAAGAC
* *
26196698 CTCTAGGCAAAATTTTAGATTTTTAAAT-AATTTCCAAAGACCTCCCGACAAAACCTC
65 CTCGAGGAAAAATTTTAGATTTTTAAATGAATTTCCAAAGACCTCCCGACAAAACCTC
* ** * *
26196755 AATTTTTGAATGATTTCCAAAGA-CTTTCAAGCAAAATTTTTAATCTTTGAATGA-TACCCAAGA
1 AATTTTTGAATGATTTCCAAAGATCTCT-AAGCAAAA-CCTCAATCTTTGAATGATTACCAAAGA
* *
26196818 CCTCCGA-GAAAAATTTTAGATTTTTGAATGATTTTCCAAAGACCT
64 CCT-CGAGGAAAAATTTTAGATTTTTAAATGAATTTCCAAAGACCT
26196863 TCAAGCAAAA
Statistics
Matches: 189, Mismatches: 31, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
120 3 0.02
121 66 0.35
122 85 0.45
123 35 0.19
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (122 bp):
AATTTTTGAATGATTTCCAAAGATCTCTAAGCAAAACCTCAATCTTTGAATGATTACCAAAGACC
TCGAGGAAAAATTTTAGATTTTTAAATGAATTTCCAAAGACCTCCCGACAAAACCTC
Found at i:26196911 original size:40 final size:41
Alignment explanation
Indices: 26196687--26196926 Score: 113
Period size: 40 Copynumber: 5.9 Consensus size: 41
26196677 TTTTGAATGA
* * * *
26196687 TTTCCAAAGACC-TCTAGGCAAAATTTTAGATTTTTAAATAA-
1 TTTCCAAAGACCTTC-AAGCAAAATCTTAAATTTTT-AGTAAT
** * *
26196728 TTTCCAAAGACC-TCCCGACAAAA-CCTCAATTTTT-G-AAT
1 TTTCCAAAGACCTTCAAG-CAAAATCTTAAATTTTTAGTAAT
* * * *
26196766 GATTTCCAAAGACTTTCAAGCAAAATTTTTAATCTTT-G-AAT
1 --TTTCCAAAGACCTTCAAGCAAAATCTTAAATTTTTAGTAAT
* * * * * * * * * *
26196807 GATACCCAAGACCTCCGAGAAAAATTTTAGATTTTTGAATGAT
1 -TTTCCAAAGACCTTCAAGCAAAATCTTAAATTTTT-AGTAAT
*
26196850 TTTCCAAAGACCTTCAAGCAAAAT-TTCAAGTTTTTAGTAAT
1 TTTCCAAAGACCTTCAAGCAAAATCTT-AAATTTTTAGTAAT
**
26196891 TTT-CAAAGACCTTCGGGCAAAATCTTAAATTTTTAG
1 TTTCCAAAGACCTTCAAGCAAAATCTTAAATTTTTAG
26196927 ATGATTTCCC
Statistics
Matches: 148, Mismatches: 40, Indels: 23
0.70 0.19 0.11
Matches are distributed among these distances:
37 2 0.01
40 76 0.51
41 44 0.30
42 24 0.16
43 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (41 bp):
TTTCCAAAGACCTTCAAGCAAAATCTTAAATTTTTAGTAAT
Found at i:26196931 original size:122 final size:121
Alignment explanation
Indices: 26196637--26196920 Score: 272
Period size: 122 Copynumber: 2.3 Consensus size: 121
26196627 AACCTCTTAC
* * * * * * *
26196637 TTTTGAATGATTTCCAAAGATC-TCTAAGCAAAA-CCTCAATTTTTGAATGATTTCCAAAGACCT
1 TTTTGAATAATTTCCAAAGACCTTC-AAGCAAAATCTTAAATCTTTGAATGA-TACCCAAGACCT
* * **
26196700 -CTAGGCAAAATTTTAGATTTTTAAATAATTTCCAAAGACCTCCCGACAAAACCTCAAT
64 CCGA-GAAAAATTTTAGATTTTTAAATAATTTCCAAAGACCTCAAGACAAAACCTCAAT
* * * *
26196758 TTTTGAATGATTTCCAAAGACTTTCAAGCAAAATTTTTAATCTTTGAATGATACCCAAGACCTCC
1 TTTTGAATAATTTCCAAAGACCTTCAAGCAAAATCTTAAATCTTTGAATGATACCCAAGACCTCC
* * **
26196823 GAGAAAAATTTTAGATTTTTGAATGATTTTCCAAAGACCTTCAAG-CAAAATTTCAAGT
66 GAGAAAAATTTTAGATTTTTAAAT-AATTTCCAAAGACC-TCAAGACAAAACCTCAA-T
* * **
26196881 TTTT-AGTAATTTTCAAAGACCTTCGGGCAAAATCTTAAAT
1 TTTTGAATAATTTCCAAAGACCTTCAAGCAAAATCTTAAAT
26196921 TTTTAGATGA
Statistics
Matches: 133, Mismatches: 24, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
121 58 0.44
122 67 0.50
123 8 0.06
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (121 bp):
TTTTGAATAATTTCCAAAGACCTTCAAGCAAAATCTTAAATCTTTGAATGATACCCAAGACCTCC
GAGAAAAATTTTAGATTTTTAAATAATTTCCAAAGACCTCAAGACAAAACCTCAAT
Found at i:26197242 original size:21 final size:21
Alignment explanation
Indices: 26197208--26197250 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
26197198 AGAGCAATTT
26197208 TTCAAAAAAGAAAA-ACTAAAA
1 TTCAAAAAAGAAAATAC-AAAA
26197229 TTCAAAAGAA-AAAATACAAAA
1 TTCAAAA-AAGAAAATACAAAA
26197250 T
1 T
26197251 AAAAACTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.70, C:0.09, G:0.05, T:0.16
Consensus pattern (21 bp):
TTCAAAAAAGAAAATACAAAA
Found at i:26197254 original size:19 final size:19
Alignment explanation
Indices: 26197213--26197254 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
26197203 AATTTTTCAA
* *
26197213 AAAAGAAAAACTAAAATTC
1 AAAAGAAAAAATAAAAATC
26197232 AAAAGAAAAAATACAAAAT-
1 AAAAGAAAAAATA-AAAATC
26197251 AAAA
1 AAAA
26197255 ACTTTTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.76, C:0.07, G:0.05, T:0.12
Consensus pattern (19 bp):
AAAAGAAAAAATAAAAATC
Found at i:26199614 original size:15 final size:15
Alignment explanation
Indices: 26199596--26199629 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26199586 AAAAAAAAAT
26199596 TAAATGATAAAAA-GA
1 TAAAT-ATAAAAATGA
26199611 TAAATATAAAAATGA
1 TAAATATAAAAATGA
26199626 TAAA
1 TAAA
26199630 AAATGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.24
Consensus pattern (15 bp):
TAAATATAAAAATGA
Found at i:26199881 original size:12 final size:12
Alignment explanation
Indices: 26199866--26199892 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26199856 AATGAAAATG
26199866 AAAATAAATAAC
1 AAAATAAATAAC
26199878 AAAATAAATAAC
1 AAAATAAATAAC
26199890 AAA
1 AAA
26199893 TTTTTCTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAATAAATAAC
Done.