Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 161 of 190
Found at i:26201493 original size:20 final size:21
Alignment explanation
Indices: 26201464--26201504 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
26201454 TTTCAAAGTC
*
26201464 AAAGACATGGTAGAAAAGGAT
1 AAAGACATGGAAGAAAAGGAT
*
26201485 AAAGA-ATGGAAGATAAGGAT
1 AAAGACATGGAAGAAAAGGAT
26201505 GCCATCAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.54, C:0.02, G:0.29, T:0.15
Consensus pattern (21 bp):
AAAGACATGGAAGAAAAGGAT
Found at i:26203586 original size:36 final size:36
Alignment explanation
Indices: 26203532--26203607 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
26203522 TAATTTGATT
* *
26203532 TTTTAATATTAATTTTGATTTTGGTTTTAATTCTAA
1 TTTTAATATTAATATTGATTTTAGTTTTAATTCTAA
* * * *
26203568 TTTTGATATTGATATTGATTTTAGTTTTACTTTTAA
1 TTTTAATATTAATATTGATTTTAGTTTTAATTCTAA
26203604 TTTT
1 TTTT
26203608 TACTTTTATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.03, G:0.09, T:0.63
Consensus pattern (36 bp):
TTTTAATATTAATATTGATTTTAGTTTTAATTCTAA
Found at i:26203601 original size:12 final size:11
Alignment explanation
Indices: 26203586--26203629 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 11
26203576 TTGATATTGA
26203586 TTTTAGTTTTAC
1 TTTTA-TTTTAC
26203598 TTTTAATTTTTAC
1 TTTT-A-TTTTAC
26203611 TTTTATTCTTAC
1 TTTTATT-TTAC
26203623 TTTTATT
1 TTTTATT
26203630 AGTCAAAGTC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 2 0.07
12 16 0.55
13 11 0.38
ACGTcount: A:0.18, C:0.09, G:0.02, T:0.70
Consensus pattern (11 bp):
TTTTATTTTAC
Found at i:26203610 original size:13 final size:13
Alignment explanation
Indices: 26203592--26203627 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
26203582 TTGATTTTAG
26203592 TTTTACTTTTAAT
1 TTTTACTTTTAAT
26203605 TTTTACTTTT-AT
1 TTTTACTTTTAAT
*
26203617 TCTTACTTTTA
1 TTTTACTTTTA
26203628 TTAGTCAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTACTTTTAAT
Found at i:26204567 original size:15 final size:16
Alignment explanation
Indices: 26204547--26204580 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
26204537 CGATCGCAAG
*
26204547 TTTTTTCTTTTC-TTT
1 TTTTTTCATTTCATTT
26204562 TTTTTTCATTTCATTT
1 TTTTTTCATTTCATTT
26204578 TTT
1 TTT
26204581 ATTTTCTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTTCATTTCATTT
Found at i:26204635 original size:12 final size:12
Alignment explanation
Indices: 26204547--26204642 Score: 54
Period size: 12 Copynumber: 7.9 Consensus size: 12
26204537 CGATCGCAAG
* *
26204547 TTTTTTCTTTTC
1 TTTTTTATTTTA
*
26204559 TTTTTT-TTTCA
1 TTTTTTATTTTA
*
26204570 TTTCATT-TTTTA
1 TTT-TTTATTTTA
* *
26204582 TTTTCTATTTTC
1 TTTTTTATTTTA
*
26204594 TATTTTGATTTTGA
1 T-TTTTTATTTT-A
**
26204608 -TTTTGGTTTTA
1 TTTTTTATTTTA
26204619 TTTTTTATTTTA
1 TTTTTTATTTTA
26204631 TTTTTTGATTTT
1 TTTTTT-ATTTT
26204643 TTCCTTTATA
Statistics
Matches: 65, Mismatches: 13, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
11 8 0.12
12 44 0.68
13 13 0.20
ACGTcount: A:0.11, C:0.06, G:0.05, T:0.77
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:26204820 original size:26 final size:28
Alignment explanation
Indices: 26204773--26204830 Score: 75
Period size: 26 Copynumber: 2.1 Consensus size: 28
26204763 TTTTGATCTT
26204773 TTTTGCATGAAAATATAATTGATTG-ATA
1 TTTTGCATG-AAATATAATTGATTGCATA
* *
26204801 TTTTGCATG-AATTTACTTGATTGCATA
1 TTTTGCATGAAATATAATTGATTGCATA
26204828 TTT
1 TTT
26204831 AATATTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 12 0.44
27 6 0.22
28 9 0.33
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48
Consensus pattern (28 bp):
TTTTGCATGAAATATAATTGATTGCATA
Found at i:26204942 original size:16 final size:17
Alignment explanation
Indices: 26204904--26204966 Score: 83
Period size: 16 Copynumber: 3.6 Consensus size: 17
26204894 TCAAATTTAA
*
26204904 TTGCATGATTTATTATAT
1 TTGCATGA-TTATGATAT
26204922 TTGCATGATTATGAT-T
1 TTGCATGATTATGATAT
26204938 TTGCATGATTATGATATCT
1 TTGCATGATTATGATA--T
26204957 TTGCATGATT
1 TTGCATGATT
26204967 GTTGTAGGAT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
16 16 0.39
17 6 0.15
18 8 0.20
19 11 0.27
ACGTcount: A:0.25, C:0.08, G:0.16, T:0.51
Consensus pattern (17 bp):
TTGCATGATTATGATAT
Found at i:26205717 original size:3 final size:3
Alignment explanation
Indices: 26205709--26205912 Score: 64
Period size: 3 Copynumber: 69.0 Consensus size: 3
26205699 TTATTTTATC
* * * * * * *
26205709 TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA CTA CTA CTA CTA CTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * *
26205757 CTA CTA TTA -TA ATA ATA ATA ATA ATA ATA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
26205804 TTA TCA CTA CTA TTAA TAA TT- TTA TTT TTA TTT TTA TCT- TTAA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA T-TA TT-A TTA
* * ** *
26205850 TTA TT- TTA CTCA -TA TT- TTA -AA TTGA ACA AT- TTA TTA TTA TTA
1 TTA TTA TTA -TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA
*
26205892 TTA TAA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
26205913 CTACTACCAC
Statistics
Matches: 165, Mismatches: 23, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
2 12 0.07
3 145 0.88
4 8 0.05
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (3 bp):
TTA
Found at i:26205917 original size:3 final size:3
Alignment explanation
Indices: 26205911--26205941 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
26205901 TTATTATTAT
*
26205911 TAC TAC TAC CAC TAC TAC TAC TAC TAC TAC T
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T
26205942 TACCTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.35, G:0.00, T:0.32
Consensus pattern (3 bp):
TAC
Found at i:26212561 original size:55 final size:55
Alignment explanation
Indices: 26212477--26212592 Score: 223
Period size: 55 Copynumber: 2.1 Consensus size: 55
26212467 GGAGGATCAA
26212477 CTTATAATTGTGGCTAAAGATGAAGATTTATTACTAACCTAGCTTATGAATACTC
1 CTTATAATTGTGGCTAAAGATGAAGATTTATTACTAACCTAGCTTATGAATACTC
26212532 CTTATAATTGTGGCTAAAGATGAAGATTTATTACTAACCTAGCTTATGAATACTC
1 CTTATAATTGTGGCTAAAGATGAAGATTTATTACTAACCTAGCTTATGAATACTC
*
26212587 CCTATA
1 CTTATA
26212593 GAAGTAGCAG
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 60 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (55 bp):
CTTATAATTGTGGCTAAAGATGAAGATTTATTACTAACCTAGCTTATGAATACTC
Found at i:26218000 original size:64 final size:65
Alignment explanation
Indices: 26217871--26218013 Score: 162
Period size: 64 Copynumber: 2.2 Consensus size: 65
26217861 ACTCATCTTC
* * * * * * * *
26217871 GATCATTTACTTTTTTAACCTGTAGTTTAATCTCAGTTACTCATGTTCGATCTTGATTTAATCTA
1 GATCATTTATTTTTTTAACCTATAGTTTAATCCCAGTCAATCATCTTCGATCTTGACTCAATCTA
* * *
26217936 GATCATTTATTTTTTTAA-CTATGGTTTAATCCCAGTCAATCATCTTCGATCTTGGCTCAGTCTA
1 GATCATTTATTTTTTTAACCTATAGTTTAATCCCAGTCAATCATCTTCGATCTTGACTCAATCTA
* *
26218000 GACCATTCATTTTT
1 GATCATTTATTTTT
26218014 CTATCTTATG
Statistics
Matches: 65, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
64 48 0.74
65 17 0.26
ACGTcount: A:0.24, C:0.19, G:0.11, T:0.46
Consensus pattern (65 bp):
GATCATTTATTTTTTTAACCTATAGTTTAATCCCAGTCAATCATCTTCGATCTTGACTCAATCTA
Found at i:26218448 original size:26 final size:28
Alignment explanation
Indices: 26218412--26218467 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 28
26218402 ACAAATTGAT
*
26218412 AATTAATAAACA-ACAAAAAAAA-GAAA
1 AATTAAAAAACAGACAAAAAAAAGGAAA
*
26218438 AATTAAAAAACAGATAAAAAAAAGGAAA
1 AATTAAAAAACAGACAAAAAAAAGGAAA
26218466 AA
1 AA
26218468 GAACCAAGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 11 0.42
27 9 0.35
28 6 0.23
ACGTcount: A:0.77, C:0.05, G:0.07, T:0.11
Consensus pattern (28 bp):
AATTAAAAAACAGACAAAAAAAAGGAAA
Found at i:26219331 original size:3 final size:3
Alignment explanation
Indices: 26219325--26219350 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26219315 TTATCATCAG
26219325 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
26219351 TTATTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:26219355 original size:3 final size:3
Alignment explanation
Indices: 26219349--26219375 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
26219339 ATAATAATAA
26219349 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
26219376 ATTTTTACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:26219659 original size:37 final size:38
Alignment explanation
Indices: 26219576--26219663 Score: 97
Period size: 37 Copynumber: 2.3 Consensus size: 38
26219566 TGTTTGATCC
* * * *
26219576 TATCAAACTATTGAAGGATTTTAATCTTAAATTAAATCT
1 TATCAAACTATTGAAAGATCTGAATC-TAAAGTAAATCT
* * *
26219615 CACCAAACTATTGAAAGATCTGCATC-AAAGTAAATCT
1 TATCAAACTATTGAAAGATCTGAATCTAAAGTAAATCT
26219652 TATCAAACTATT
1 TATCAAACTATT
26219664 AGAGAATTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
37 20 0.50
39 20 0.50
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.34
Consensus pattern (38 bp):
TATCAAACTATTGAAAGATCTGAATCTAAAGTAAATCT
Found at i:26222399 original size:46 final size:47
Alignment explanation
Indices: 26222286--26222401 Score: 130
Period size: 46 Copynumber: 2.5 Consensus size: 47
26222276 CAGTTTTGTG
* *
26222286 AACTATTGGATCTTTAAACTTTTACAAATCTTAGAAACCCTTTTGTGA
1 AACT-TTGAATCTTTAAACTTTTACAAATCTTAGAAACCCTTTTCTGA
*
26222334 AACTTTGGATCTTTAAACTTTTACAAATC-TAGAAA-CCTTTCTACT-A
1 AACTTTGAATCTTTAAACTTTTACAAATCTTAGAAACCCTTT-T-CTGA
* * *
26222380 ACCTTTGAATTTTTTAACTTTT
1 AACTTTGAATCTTTAAACTTTT
26222402 GTGAATCCTT
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
45 5 0.08
46 26 0.43
47 26 0.43
48 4 0.07
ACGTcount: A:0.32, C:0.17, G:0.08, T:0.43
Consensus pattern (47 bp):
AACTTTGAATCTTTAAACTTTTACAAATCTTAGAAACCCTTTTCTGA
Found at i:26222470 original size:49 final size:49
Alignment explanation
Indices: 26222223--26222678 Score: 248
Period size: 47 Copynumber: 9.4 Consensus size: 49
26222213 ATGAATCTCA
* ** * *
26222223 GAAACCCTTTTGCT-AACCTTTGGA-TTTTAAATTTCTTTTGTAGATCTTC
1 GAAA-CCTTTTG-TGAACCTTTGCATTTTTAAATTTCTTTTACAAATCTTT
* * * * *
26222272 AAAACAGTTTTGTGAA-CTATTGGATCTTTAAA---CTTTTACAAATCTTA
1 GAAAC-CTTTTGTGAACCT-TTGCATTTTTAAATTTCTTTTACAAATCTTT
* * * *
26222319 GAAACCCTTTTGTGAAACTTTGGATCTTTAAA---CTTTTACAAATC-TA
1 GAAA-CCTTTTGTGAACCTTTGCATTTTTAAATTTCTTTTACAAATCTTT
* * * *** *
26222365 GAAACCTTTCTACT-AACCTTTGAATTTTTTAA---CTTTTGTGAATCCTT
1 GAAACCTTT-T-GTGAACCTTTGCATTTTTAAATTTCTTTTACAAATCTTT
*
26222412 GAAACCTTTTGTGGACCTTTGCATTTTTAAATTTCTTTTACAAATCTTT
1 GAAACCTTTTGTGAACCTTTGCATTTTTAAATTTCTTTTACAAATCTTT
* * * *
26222461 GAAATCTTTTGTGAACCTTTG--GTTTTAAATTTCTTTTGCAGAT-TATT
1 GAAACCTTTTGTGAACCTTTGCATTTTTAAATTTCTTTTACAAATCT-TT
* ** * *
26222508 AAAACCATTTTACGAACCTTTGGC-TCTTTAAATTTCTTTTACAAATCATT
1 GAAACC-TTTTGTGAACCTTT-GCATTTTTAAATTTCTTTTACAAATCTTT
* * * * * *
26222558 AAAACCTTTT-TCAAACCTTTACATTTTAAAATTCCTTTTACGAATCTTT
1 GAAACCTTTTGT-GAACCTTTGCATTTTTAAATTTCTTTTACAAATCTTT
*** * * **
26222607 GAAACCATTTTACAAATCTTTGAATTTTTAAATTTCTTTTATGAATCTTT
1 GAAACC-TTTTGTGAACCTTTGCATTTTTAAATTTCTTTTACAAATCTTT
* *
26222657 GAAACCCTTTTGTAAATCTTTG
1 GAAA-CCTTTTGTGAACCTTTG
26222679 GATCTTTTGT
Statistics
Matches: 326, Mismatches: 58, Indels: 45
0.76 0.14 0.10
Matches are distributed among these distances:
45 6 0.02
46 47 0.14
47 84 0.26
48 20 0.06
49 83 0.25
50 84 0.26
51 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.45
Consensus pattern (49 bp):
GAAACCTTTTGTGAACCTTTGCATTTTTAAATTTCTTTTACAAATCTTT
Found at i:26222638 original size:99 final size:97
Alignment explanation
Indices: 26222426--26222677 Score: 249
Period size: 99 Copynumber: 2.6 Consensus size: 97
26222416 CCTTTTGTGG
* * * * * **
26222426 ACCTTTGCATTTTTAAATTTCTTTTACAAATCTTTGAAATCTTTTGTGAACCTTTGGTTTTAAAT
1 ACCTTTGAATTTTTAAATTTCTTTTACAAATCATTAAAACCTTTTGTAAACCTTTCATTTTAAAT
* * *
26222491 TTCTTTTGCAGATTATTAAAACCATTTTACGA
66 TCCTTTTACAGATTATTAAAACCATTTTACAA
** *
26222523 ACCTTTGGCTCTTTAAATTTCTTTTACAAATCATTAAAACCTTTT-TCAAACCTTTACATTTTAA
1 ACCTTTGAATTTTTAAATTTCTTTTACAAATCATTAAAACCTTTTGT-AAACCTTT-CATTTT-A
*
26222587 AATTCCTTTTAC-GAATCT-TTGAAACCATTTTACAA
63 AATTCCTTTTACAG-AT-TATTAAAACCATTTTACAA
* ** * * *
26222622 ATCTTTGAATTTTTAAATTTCTTTTATGAATCTTTGAAACCCTTTTGTAAATCTTT
1 ACCTTTGAATTTTTAAATTTCTTTTACAAATCATT-AAAACCTTTTGTAAACCTTT
26222678 GGATCTTTTG
Statistics
Matches: 126, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
96 1 0.01
97 46 0.37
98 5 0.04
99 56 0.44
100 17 0.13
101 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.07, T:0.48
Consensus pattern (97 bp):
ACCTTTGAATTTTTAAATTTCTTTTACAAATCATTAAAACCTTTTGTAAACCTTTCATTTTAAAT
TCCTTTTACAGATTATTAAAACCATTTTACAA
Found at i:26222655 original size:50 final size:49
Alignment explanation
Indices: 26222351--26222667 Score: 220
Period size: 50 Copynumber: 6.5 Consensus size: 49
26222341 GATCTTTAAA
* * * *
26222351 CTTTTACAAATC-TAGAAACCTTTCTACTAACCTTTGAATTTTTTAA---
1 CTTTTACGAATCTTTGAAACCTTT-TACAAACCTTTGAATTTTTAAATTT
** * **** *
26222397 CTTTTGTGAATCCTTGAAACCTTTTGTGGACCTTTGCATTTTTAAATTT
1 CTTTTACGAATCTTTGAAACCTTTTACAAACCTTTGAATTTTTAAATTT
* * *** *
26222446 CTTTTACAAATCTTTGAAATCTTTTGTGAACCTTTG--GTTTTAAATTT
1 CTTTTACGAATCTTTGAAACCTTTTACAAACCTTTGAATTTTTAAATTT
* * * ** *
26222493 CTTTTGC-AGAT-TATTAAAACCATTTTACGAACCTTTGGCTCTTTAAATTT
1 CTTTTACGA-ATCT-TTGAAACC-TTTTACAAACCTTTGAATTTTTAAATTT
* * * * * *
26222543 CTTTTACAAATCATTAAAACCTTTTTCAAACCTTT-ACATTTTAAAATTC
1 CTTTTACGAATCTTTGAAACCTTTTACAAACCTTTGA-ATTTTTAAATTT
*
26222592 CTTTTACGAATCTTTGAAACCATTTTACAAATCTTTGAATTTTTAAATTT
1 CTTTTACGAATCTTTGAAACC-TTTTACAAACCTTTGAATTTTTAAATTT
*
26222642 CTTTTATGAATCTTTGAAACCCTTTT
1 CTTTTACGAATCTTTGAAA-CCTTTT
26222668 GTAAATCTTT
Statistics
Matches: 215, Mismatches: 41, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
46 27 0.13
47 34 0.16
48 13 0.06
49 68 0.32
50 69 0.32
51 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.08, T:0.47
Consensus pattern (49 bp):
CTTTTACGAATCTTTGAAACCTTTTACAAACCTTTGAATTTTTAAATTT
Found at i:26222666 original size:21 final size:21
Alignment explanation
Indices: 26222642--26222708 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
26222632 TTTTAAATTT
26222642 CTTTTATGAATCTTTGAAACC
1 CTTTTATGAATCTTTGAAACC
* * * *
26222663 CTTTTGTAAATCTTTG-GA-T
1 CTTTTATGAATCTTTGAAACC
* *
26222682 CTTTTGTGAATTTTTGAAACC
1 CTTTTATGAATCTTTGAAACC
26222703 CTTTTA
1 CTTTTA
26222709 CAAATCATTG
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
19 14 0.40
20 2 0.06
21 19 0.54
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.49
Consensus pattern (21 bp):
CTTTTATGAATCTTTGAAACC
Found at i:26222730 original size:18 final size:17
Alignment explanation
Indices: 26222703--26222737 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26222693 TTTTGAAACC
26222703 CTTTTACAAATCATTGAA
1 CTTTTACAAATC-TTGAA
*
26222721 CTTTTGCAAATCTTGAA
1 CTTTTACAAATCTTGAA
26222738 AACTATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (17 bp):
CTTTTACAAATCTTGAA
Found at i:26222927 original size:21 final size:20
Alignment explanation
Indices: 26222903--26223014 Score: 79
Period size: 21 Copynumber: 5.3 Consensus size: 20
26222893 GTTAACCTTA
26222903 AAACCTCTGATGTGAAATTTG
1 AAACCT-TGATGTGAAATTTG
26222924 AAACCTTCGATGTG-AATCTTG
1 AAACCTT-GATGTGAAAT-TTG
* *
26222945 AAACTCTTTGATGTGAAA-GTC
1 AAAC-C-TTGATGTGAAATTTG
*
26222966 AAAGCCTTCAATGTG-AATCTTG
1 AAA-CCTT-GATGTGAAAT-TTG
*
26222988 AAACCTTTGATGTGAATTTTG
1 AAACC-TTGATGTGAAATTTG
26223009 -AACCTT
1 AAACCTT
26223015 CAAATGTGAA
Statistics
Matches: 73, Mismatches: 7, Indels: 24
0.70 0.07 0.23
Matches are distributed among these distances:
19 2 0.03
20 12 0.16
21 39 0.53
22 16 0.22
23 4 0.05
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (20 bp):
AAACCTTGATGTGAAATTTG
Found at i:26222974 original size:43 final size:42
Alignment explanation
Indices: 26222888--26223028 Score: 151
Period size: 42 Copynumber: 3.3 Consensus size: 42
26222878 ATCAGAACTA
* * * * * *
26222888 TCAATGTTAACCTTAAAACCTCTGATGTGAAATTTGAAACCT
1 TCAATGTGAATCTTGAAACCTTTGATGTGAAATGTCAAACCT
*
26222930 TCGATGTGAATCTTGAAACTCTTTGATGTGAAA-GTCAAAGCCT
1 TCAATGTGAATCTTGAAAC-CTTTGATGTGAAATGTCAAA-CCT
* **
26222973 TCAATGTGAATCTTGAAACCTTTGATGTG-AATTTTGAACCT
1 TCAATGTGAATCTTGAAACCTTTGATGTGAAATGTCAAACCT
26223014 TCAAATGTGAATCTT
1 TC-AATGTGAATCTT
26223029 TGATTTTTTT
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
41 7 0.08
42 44 0.52
43 33 0.39
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (42 bp):
TCAATGTGAATCTTGAAACCTTTGATGTGAAATGTCAAACCT
Found at i:26223021 original size:21 final size:20
Alignment explanation
Indices: 26222970--26223031 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 20
26222960 AAAGTCAAAG
*
26222970 CCTTCAATGTGAATCTTGAAA
1 CCTTCAATGTGAATTTTG-AA
**
26222991 CCTTTGATGTGAATTTTGAA
1 CCTTCAATGTGAATTTTGAA
26223011 CCTTCAAATGTGAATCTTTGA
1 CCTTC-AATGTGAAT-TTTGA
26223032 TTTTTTTGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 6 0.18
21 23 0.68
22 5 0.15
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (20 bp):
CCTTCAATGTGAATTTTGAA
Found at i:26223133 original size:23 final size:22
Alignment explanation
Indices: 26223098--26223155 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
26223088 TTCAAATGTA
* *
26223098 AATCTTTGA-TTTTTAGACATG
1 AATCTTTAATTTTTTAAACATG
**
26223119 AATCTCTTAATTTTTTAAATGTG
1 AATCT-TTAATTTTTTAAACATG
26223142 AATCTTTAATTTTT
1 AATCTTTAATTTTT
26223156 CGATGAGAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 5 0.16
22 12 0.39
23 14 0.45
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (22 bp):
AATCTTTAATTTTTTAAACATG
Found at i:26223165 original size:21 final size:22
Alignment explanation
Indices: 26223118--26223235 Score: 80
Period size: 21 Copynumber: 5.4 Consensus size: 22
26223108 TTTTAGACAT
*
26223118 GAATCTCTTAATTTTTTAAATGT
1 GAATCT-TTAATTTTTTAAATGA
**
26223141 GAATCTTTAA-TTTTTCGATGA
1 GAATCTTTAATTTTTTAAATGA
* * *
26223162 GAATCTTTGAA-CTTTCAAATGT
1 GAATCTTT-AATTTTTTAAATGA
* * *
26223184 GAATCTTTAAACTATTCAAATGA
1 GAATCTTT-AATTTTTTAAATGA
* * *
26223207 GAATCTTTGA-TTTTTATATAA
1 GAATCTTTAATTTTTTAAATGA
26223228 GAATCTTT
1 GAATCTTT
26223236 GAACTTTCCA
Statistics
Matches: 76, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
21 31 0.41
22 23 0.30
23 22 0.29
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.46
Consensus pattern (22 bp):
GAATCTTTAATTTTTTAAATGA
Found at i:26223166 original size:44 final size:44
Alignment explanation
Indices: 26223082--26223193 Score: 122
Period size: 44 Copynumber: 2.5 Consensus size: 44
26223072 TTAAGATTAA
* *
26223082 AATTTTTTCAAATGTAAATCTTTGATTTTTAGACATGAATCTCTT-
1 AATTTTTT-AAATGTGAATCTTTAATTTTTAGACATGAATCT-TTG
* *
26223127 AATTTTTTAAATGTGAATCTTTAATTTTTCGATGA-GAATCTTTG
1 AATTTTTTAAATGTGAATCTTTAATTTTTAGA-CATGAATCTTTG
* *
26223171 AA-CTTTCAAATGTGAATCTTTAA
1 AATTTTTTAAATGTGAATCTTTAA
26223194 ACTATTCAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
43 21 0.36
44 29 0.49
45 9 0.15
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.47
Consensus pattern (44 bp):
AATTTTTTAAATGTGAATCTTTAATTTTTAGACATGAATCTTTG
Found at i:26223205 original size:23 final size:21
Alignment explanation
Indices: 26223135--26223248 Score: 86
Period size: 21 Copynumber: 5.2 Consensus size: 21
26223125 TTAATTTTTT
* *
26223135 AAATGTGAATCTTTAATTTTTC
1 AAATGAGAATCTTTAA-CTTTC
*
26223157 -GATGAGAATCTTTGAACTTTC
1 AAATGAGAATCTTT-AACTTTC
*
26223178 AAATGTGAATCTTTAAACTATTC
1 AAATGAGAATCTTT-AACT-TTC
* * *
26223201 AAATGAGAATCTTTGATTTTT
1 AAATGAGAATCTTTAACTTTC
* *
26223222 ATATAAGAATCTTTGAACTTTC
1 AAATGAGAATCTTT-AACTTTC
*
26223244 CAATG
1 AAATG
26223249 TTAATCTTCA
Statistics
Matches: 70, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
21 29 0.41
22 25 0.36
23 16 0.23
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.42
Consensus pattern (21 bp):
AAATGAGAATCTTTAACTTTC
Found at i:26223329 original size:23 final size:21
Alignment explanation
Indices: 26223277--26223378 Score: 73
Period size: 21 Copynumber: 4.6 Consensus size: 21
26223267 CTTTGAACCC
* *
26223277 TTCAAATGAGAATCTTTG-ATT
1 TTCAAATGTGAAT-TTTGAAAT
* *
26223298 TTTAGATGTGAATTTCTGAACAT
1 TTCAAATGTGAATTT-TGAA-AT
*
26223321 TTCAAATGTGAATATTTG-ATT
1 TTCAAATGTGAAT-TTTGAAAT
*
26223342 TTTAAATGTGAATTTATGAAAAAT
1 TTCAAATGTGAATTT-TG--AAAT
26223366 TTCAAATGTGAAT
1 TTCAAATGTGAAT
26223379 CTTTATTTTT
Statistics
Matches: 63, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
20 4 0.06
21 27 0.43
22 2 0.03
23 14 0.22
24 16 0.25
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.43
Consensus pattern (21 bp):
TTCAAATGTGAATTTTGAAAT
Found at i:26223339 original size:44 final size:44
Alignment explanation
Indices: 26223277--26223578 Score: 215
Period size: 44 Copynumber: 7.1 Consensus size: 44
26223267 CTTTGAACCC
* * *
26223277 TTCAAATGAGAATCTTTGATTTTTAGATGTGAATTTCTGAACAT
1 TTCAAATGTGAATATTTGATTTTTAGATGTGAATTTCTGAAAAT
* *
26223321 TTCAAATGTGAATATTTGATTTTTAAATGTGAATTTATGAAAAAT
1 TTCAAATGTGAATATTTGATTTTTAGATGTGAATTTCTG-AAAAT
* *
26223366 TTCAAATGTGAATCTTT-ATTTTTAGATATGAATCTT-TGAAAAT
1 TTCAAATGTGAATATTTGATTTTTAGATGTGAAT-TTCTGAAAAT
* * **
26223409 ATTCAAATATGAATATTTGA-CTTT---TG-G-A-TT-TGAACCT
1 -TTCAAATGTGAATATTTGATTTTTAGATGTGAATTTCTGAAAAT
* * * * ** *
26223446 TTGAAATGTGAATCTTTGACTTTTCGATGCAAATCTCTGAAAAAT
1 TTCAAATGTGAATATTTGATTTTTAGATGTGAATTTCTG-AAAAT
* * * *
26223491 TTCAAATATGAATATTTGACTTTTGGATCTGAA--TCT-----T
1 TTCAAATGTGAATATTTGATTTTTAGATGTGAATTTCTGAAAAT
* * *
26223528 TTCAAATATGAATATTTGATTTTTAGATGTGAATCTCTAAAAATT
1 TTCAAATGTGAATATTTGATTTTTAGATGTGAATTTCTGAAAA-T
26223573 TTCAAA
1 TTCAAA
26223579 CGAGAACGTA
Statistics
Matches: 205, Mismatches: 32, Indels: 41
0.74 0.12 0.15
Matches are distributed among these distances:
36 16 0.08
37 41 0.20
39 4 0.02
40 3 0.01
41 1 0.00
42 1 0.00
43 9 0.04
44 71 0.35
45 59 0.29
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.43
Consensus pattern (44 bp):
TTCAAATGTGAATATTTGATTTTTAGATGTGAATTTCTGAAAAT
Found at i:26223441 original size:37 final size:37
Alignment explanation
Indices: 26223400--26223560 Score: 119
Period size: 37 Copynumber: 4.2 Consensus size: 37
26223390 GATATGAATC
26223400 TTTGAAAATATTCAAATATGAATATTTGACTTTTGGA
1 TTTGAAAATATTCAAATATGAATATTTGACTTTTGGA
** * * *
26223437 TTTGAACCT-TTGAAATGTGAATCTTTGACTTTTCGATGCAAA
1 TTTGAAAATATTCAAATATGAATATTTGACTTTT-G--G---A
26223479 TCTCTGAAAA-ATTTCAAATATGAATATTTGACTTTTGGA
1 T-T-TGAAAATA-TTCAAATATGAATATTTGACTTTTGGA
* ** * * *
26223518 TCTGAATCTTTTCAAATATGAATATTTGATTTTTAGA
1 TTTGAAAATATTCAAATATGAATATTTGACTTTTGGA
*
26223555 TGTGAA
1 TTTGAA
26223561 TCTCTAAAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
36 21 0.22
37 42 0.44
39 3 0.03
42 3 0.03
43 1 0.01
44 5 0.05
45 21 0.22
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (37 bp):
TTTGAAAATATTCAAATATGAATATTTGACTTTTGGA
Found at i:26223451 original size:89 final size:89
Alignment explanation
Indices: 26223277--26223514 Score: 228
Period size: 89 Copynumber: 2.8 Consensus size: 89
26223267 CTTTGAACCC
* * * *
26223277 TTCAAATGAGAATCTTTGATTTTTAGATGTGAATTTCTGAACATTTCAAATGTGAATATTTGATT
1 TTCAAATGAGAATCTTTGATTTTTAGATATGAATTTCTGAAAATTTCAAATATGAATATTTGACT
*
26223342 TTTAAATGTGAATTTATGAAAAAT
66 TTTAAATGTGAACTTATGAAAAAT
*
26223366 TTCAAATGTGAATCTTT-ATTTTTAGATATGAATCTT-TGAAAATATTCAAATATGAATATTTGA
1 TTCAAATGAGAATCTTTGATTTTTAGATATGAAT-TTCTGAAAAT-TTCAAATATGAATATTTGA
**
26223429 C-TTT---TG-G-A-TT-TG-AACCT
64 CTTTTAAATGTGAACTTATGAAAAAT
* * * * *** *
26223446 TTGAAATGTGAATCTTTGACTTTTCGATGCAAATCTCTGAAAAATTTCAAATATGAATATTTGAC
1 TTCAAATGAGAATCTTTGATTTTTAGATATGAATTTCTG-AAAATTTCAAATATGAATATTTGAC
26223511 TTTT
65 TTTT
26223515 GGATCTGAAT
Statistics
Matches: 129, Mismatches: 14, Indels: 19
0.80 0.09 0.12
Matches are distributed among these distances:
80 20 0.16
81 35 0.27
82 10 0.08
83 1 0.01
84 1 0.01
85 2 0.02
88 24 0.19
89 36 0.28
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.44
Consensus pattern (89 bp):
TTCAAATGAGAATCTTTGATTTTTAGATATGAATTTCTGAAAATTTCAAATATGAATATTTGACT
TTTAAATGTGAACTTATGAAAAAT
Found at i:26223495 original size:81 final size:82
Alignment explanation
Indices: 26223365--26223578 Score: 283
Period size: 81 Copynumber: 2.6 Consensus size: 82
26223355 TTATGAAAAA
* *
26223365 TTTCAAATGTGAATCTTT-ATTTTTAGATATGAATCTTTG-AAAATATTCAAATATGAATATTTG
1 TTTCAAATGTGAATCTTTGATTTTTAGATGTGAATCTCTGAAAAAT-TTCAAATATGAATATTTG
*
26223428 ACTTTTGGATTTGAA-CC
65 ACTTTTGGATCTGAATCC
* * * **
26223445 TTTGAAATGTGAATCTTTGACTTTTCGATGCAAATCTCTGAAAAATTTCAAATATGAATATTTGA
1 TTTCAAATGTGAATCTTTGATTTTTAGATGTGAATCTCTGAAAAATTTCAAATATGAATATTTGA
*
26223510 CTTTTGGATCTGAATCT
66 CTTTTGGATCTGAATCC
* *
26223527 TTTCAAATATGAATATTTGATTTTTAGATGTGAATCTCT-AAAAATTTTCAAA
1 TTTCAAATGTGAATCTTTGATTTTTAGATGTGAATCTCTGAAAAA-TTTCAAA
26223579 CGAGAACGTA
Statistics
Matches: 114, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
80 17 0.15
81 52 0.46
82 45 0.39
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.43
Consensus pattern (82 bp):
TTTCAAATGTGAATCTTTGATTTTTAGATGTGAATCTCTGAAAAATTTCAAATATGAATATTTGA
CTTTTGGATCTGAATCC
Found at i:26223526 original size:45 final size:44
Alignment explanation
Indices: 26223449--26223578 Score: 114
Period size: 37 Copynumber: 3.1 Consensus size: 44
26223439 TGAACCTTTG
* * * *
26223449 AAATGTGAATCTTTGACTTTTCGATGC-AAATCTCTGAAAAATTTC
1 AAATATGAATATTTGACTTTTAGAT-CTGAATCTCT-AAAAATTTC
*
26223494 AAATATGAATATTTGACTTTTGGATCTGAA--TCT-----TTTC
1 AAATATGAATATTTGACTTTTAGATCTGAATCTCTAAAAATTTC
* *
26223531 AAATATGAATATTTGATTTTTAGATGTGAATCTCTAAAAATTTTC
1 AAATATGAATATTTGACTTTTAGATCTGAATCTCTAAAAA-TTTC
26223576 AAA
1 AAA
26223579 CGAGAACGTA
Statistics
Matches: 69, Mismatches: 7, Indels: 18
0.73 0.07 0.19
Matches are distributed among these distances:
37 31 0.45
39 3 0.04
43 3 0.04
44 1 0.01
45 31 0.45
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (44 bp):
AAATATGAATATTTGACTTTTAGATCTGAATCTCTAAAAATTTC
Found at i:26223561 original size:37 final size:37
Alignment explanation
Indices: 26223490--26223563 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
26223480 CTCTGAAAAA
*
26223490 TTTCAAATATGAATATTTGACTTTTGGATCTGAATCT
1 TTTCAAATATGAATATTTGACTTTTAGATCTGAATCT
* *
26223527 TTTCAAATATGAATATTTGATTTTTAGATGTGAATCT
1 TTTCAAATATGAATATTTGACTTTTAGATCTGAATCT
26223564 CTAAAAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.47
Consensus pattern (37 bp):
TTTCAAATATGAATATTTGACTTTTAGATCTGAATCT
Found at i:26224143 original size:26 final size:26
Alignment explanation
Indices: 26224127--26224244 Score: 84
Period size: 25 Copynumber: 4.7 Consensus size: 26
26224117 CACAAGTTGG
26224127 GAATTTAAGCCCATGGCAGCAGTTAA
1 GAATTTAAGCCCATGGCAGCAGTTAA
* * **
26224153 GAATTTAAG-CCATGACACCAAATAA
1 GAATTTAAGCCCATGGCAGCAGTTAA
* * * * *
26224178 G-ATTTAAACCCATAGAACCAGATAA
1 GAATTTAAGCCCATGGCAGCAGTTAA
* *
26224203 G-ATTTAA-ACCATGGCA-CTAGTTGA
1 GAATTTAAGCCCATGGCAGC-AGTTAA
*
26224227 GATTTTAAGCCCATGGCA
1 GAATTTAAGCCCATGGCA
26224245 TCAATTAAAA
Statistics
Matches: 72, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
23 1 0.01
24 17 0.24
25 37 0.51
26 17 0.24
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (26 bp):
GAATTTAAGCCCATGGCAGCAGTTAA
Found at i:26224234 original size:50 final size:50
Alignment explanation
Indices: 26224114--26224382 Score: 208
Period size: 50 Copynumber: 5.6 Consensus size: 50
26224104 TTTAATTCCG
* * * * * *
26224114 TGGCACAAGTTGGGAATTTAAGCCCATGGCAGCAGTTAAGAATTTAAGCCA
1 TGGCACAAGTTGAGATTTTAAGCCCATGGAACCAGATAAG-ATTTAAACCA
* * * * *
26224165 TGACACCAA-ATAAGA-TTTAAACCCATAGAACCAGATAAGATTTAAACCA
1 TGGCA-CAAGTTGAGATTTTAAGCCCATGGAACCAGATAAGATTTAAACCA
* *
26224214 TGGCACTAGTTGAGATTTTAAGCCCATGG---C--ATCA-A-TTAAA--A
1 TGGCACAAGTTGAGATTTTAAGCCCATGGAACCAGATAAGATTTAAACCA
* * * *
26224255 T-GCACAAGTTGGGAATTTAAGCCCATGGCAA-CAGTTAAGAATTTAAGCCA
1 TGGCACAAGTTGAGATTTTAAGCCCATGG-AACCAGATAAG-ATTTAAACCA
* *
26224305 TGGCACCAAATT-AGA-TTTAAACCCATGGAACCAGATAAGATTTAAACCA
1 TGGCA-CAAGTTGAGATTTTAAGCCCATGGAACCAGATAAGATTTAAACCA
*
26224354 TGGCACTAGTTGAGATTTTAAGCCCATGG
1 TGGCACAAGTTGAGATTTTAAGCCCATGG
26224383 CATCAATTAA
Statistics
Matches: 169, Mismatches: 31, Indels: 37
0.71 0.13 0.16
Matches are distributed among these distances:
40 24 0.14
41 2 0.01
43 6 0.04
44 1 0.01
45 5 0.03
47 2 0.01
48 10 0.06
49 36 0.21
50 63 0.37
51 12 0.07
52 8 0.05
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.25
Consensus pattern (50 bp):
TGGCACAAGTTGAGATTTTAAGCCCATGGAACCAGATAAGATTTAAACCA
Found at i:26224330 original size:25 final size:24
Alignment explanation
Indices: 26224290--26224359 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
26224280 TGGCAACAGT
*
26224290 TAAGAATTTAAGCCATGGCACCAAA
1 TAAG-ATTTAAACCATGGCACCAAA
* * *
26224315 TTAGATTTAAACCCATGGAACCAGA
1 TAAGATTTAAA-CCATGGCACCAAA
26224340 TAAGATTTAAACCATGGCAC
1 TAAGATTTAAACCATGGCAC
26224360 TAGTTGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 14 0.37
25 24 0.63
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (24 bp):
TAAGATTTAAACCATGGCACCAAA
Found at i:26224374 original size:25 final size:23
Alignment explanation
Indices: 26224277--26224371 Score: 75
Period size: 25 Copynumber: 3.9 Consensus size: 23
26224267 GAATTTAAGC
*
26224277 CCATGGCAACAGTTAAGAATTTAAG
1 CCATGGC-ACAGTTAAG-ATTTAAA
*
26224302 CCATGGCACCAAATT-AGATTTAAA
1 CCATGGCA-C-AGTTAAGATTTAAA
* *
26224326 CCCATGGAACCAGATAAGATTTAAA
1 -CCATGGCA-CAGTTAAGATTTAAA
*
26224351 CCATGGCACTAGTTGAGATTT
1 CCATGGCAC-AGTTAAGATTT
26224372 TAAGCCCATG
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
23 1 0.02
24 25 0.44
25 28 0.49
26 3 0.05
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (23 bp):
CCATGGCACAGTTAAGATTTAAA
Found at i:26224403 original size:140 final size:140
Alignment explanation
Indices: 26224116--26224395 Score: 524
Period size: 140 Copynumber: 2.0 Consensus size: 140
26224106 TAATTCCGTG
*
26224116 GCACAAGTTGGGAATTTAAGCCCATGGCAGCAGTTAAGAATTTAAGCCATGACACCAAATAAGAT
1 GCACAAGTTGGGAATTTAAGCCCATGGCAACAGTTAAGAATTTAAGCCATGACACCAAATAAGAT
26224181 TTAAACCCATAGAACCAGATAAGATTTAAACCATGGCACTAGTTGAGATTTTAAGCCCATGGCAT
66 TTAAACCCATAGAACCAGATAAGATTTAAACCATGGCACTAGTTGAGATTTTAAGCCCATGGCAT
26224246 CAATTAAAAT
131 CAATTAAAAT
* *
26224256 GCACAAGTTGGGAATTTAAGCCCATGGCAACAGTTAAGAATTTAAGCCATGGCACCAAATTAGAT
1 GCACAAGTTGGGAATTTAAGCCCATGGCAACAGTTAAGAATTTAAGCCATGACACCAAATAAGAT
*
26224321 TTAAACCCATGGAACCAGATAAGATTTAAACCATGGCACTAGTTGAGATTTTAAGCCCATGGCAT
66 TTAAACCCATAGAACCAGATAAGATTTAAACCATGGCACTAGTTGAGATTTTAAGCCCATGGCAT
26224386 CAATTAAAAT
131 CAATTAAAAT
26224396 TATCAAGTAA
Statistics
Matches: 136, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
140 136 1.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.25
Consensus pattern (140 bp):
GCACAAGTTGGGAATTTAAGCCCATGGCAACAGTTAAGAATTTAAGCCATGACACCAAATAAGAT
TTAAACCCATAGAACCAGATAAGATTTAAACCATGGCACTAGTTGAGATTTTAAGCCCATGGCAT
CAATTAAAAT
Found at i:26224558 original size:28 final size:28
Alignment explanation
Indices: 26224518--26224576 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
26224508 ACATGATGAT
*
26224518 AGTTTCAAGCCCAATATAGGTGGTACAA
1 AGTTTCAAGCCCAATATAGGTGGCACAA
* *
26224546 AGTTTCAAGCCCAATCTAGTTGGCACAA
1 AGTTTCAAGCCCAATATAGGTGGCACAA
26224574 AGT
1 AGT
26224577 GTTAAACCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (28 bp):
AGTTTCAAGCCCAATATAGGTGGCACAA
Found at i:26224586 original size:28 final size:28
Alignment explanation
Indices: 26224518--26224596 Score: 88
Period size: 28 Copynumber: 2.8 Consensus size: 28
26224508 ACATGATGAT
* * * *
26224518 AGTTTCAAGCCCAATATAGGTGGTACAA
1 AGTTTCAAACCCAATCTAGTTGGCACAA
*
26224546 AGTTTCAAGCCCAATCTAGTTGGCACAA
1 AGTTTCAAACCCAATCTAGTTGGCACAA
*
26224574 AGTGTT-AAACCCAATCAAGTTGG
1 AGT-TTCAAACCCAATCTAGTTGG
26224597 TATATATGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
28 43 0.96
29 2 0.04
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (28 bp):
AGTTTCAAACCCAATCTAGTTGGCACAA
Found at i:26224797 original size:45 final size:46
Alignment explanation
Indices: 26224623--26224916 Score: 266
Period size: 45 Copynumber: 6.5 Consensus size: 46
26224613 AAAATTCCAA
* * * *
26224623 AGCCTCTAATGAGAGGAGCCTTTTCAGTGTAATTCTT-TAAGTTATCG
1 AGCCTCTAATGAAAGGAG-CTTTTCAATTTAATT-TTCTAAGTTGTCG
* *
26224670 AGCCTCTAATGAAATGAGCATTTCAATTTAA-TTTCTAAGTTGTCG
1 AGCCTCTAATGAAAGGAGCTTTTCAATTTAATTTTCTAAGTTGTCG
* *
26224715 A-CCTCTAATG-AAGAAGCTTTT-AATTTAATTTTCTAAGTTGTTG
1 AGCCTCTAATGAAAGGAGCTTTTCAATTTAATTTTCTAAGTTGTCG
* *
26224758 AGCCTCTAATGAAAGGAG-TTTTCGAA-TTAATTTTTTAAGTTGTTG
1 AGCCTCTAATGAAAGGAGCTTTTC-AATTTAATTTTCTAAGTTGTCG
* * * * * *
26224803 AGCCTTTAATGAAA-AAGCCTTTCAATTTAAATTTCTAAATTGTCA
1 AGCCTCTAATGAAAGGAGCTTTTCAATTTAATTTTCTAAGTTGTCG
* * ** *
26224848 AGCCTCTCATGAGAGGAGCCATTCCATTTAATTTTCTAAGTTGT-G
1 AGCCTCTAATGAAAGGAGCTTTTCAATTTAATTTTCTAAGTTGTCG
* *
26224893 -GCAACTCTAATGAGAGGAGTTTTT
1 AGC--CTCTAATGAAAGGAGCTTTT
26224917 ATAAATAAAA
Statistics
Matches: 203, Mismatches: 33, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
42 7 0.03
43 22 0.11
44 30 0.15
45 76 0.37
46 52 0.26
47 16 0.08
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (46 bp):
AGCCTCTAATGAAAGGAGCTTTTCAATTTAATTTTCTAAGTTGTCG
Found at i:26229639 original size:14 final size:13
Alignment explanation
Indices: 26229622--26229664 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
26229612 TGTAAAATTT
26229622 TTTAATATAAATAA
1 TTTAATATAAA-AA
*
26229636 TTTAAT-TAAAAT
1 TTTAATATAAAAA
26229648 TTTAATA-AAAAA
1 TTTAATATAAAAA
26229660 TTTAA
1 TTTAA
26229665 ATTGATAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 16 0.62
13 4 0.15
14 6 0.23
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTAATATAAAAA
Found at i:26229725 original size:17 final size:18
Alignment explanation
Indices: 26229687--26229724 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
26229677 ATAAAATTCA
26229687 ATAAAAAATTAATAATAT
1 ATAAAAAATTAATAATAT
*
26229705 ATAAAAATATTAAAAATAT
1 ATAAAAA-ATTAATAATAT
26229724 A
1 A
26229725 ATTTATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAAAAATTAATAATAT
Found at i:26229915 original size:11 final size:12
Alignment explanation
Indices: 26229880--26229916 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
26229870 CATTTATTCG
26229880 TTTTGATTTTAA
1 TTTTGATTTTAA
*
26229892 TTTTAATTTTAA
1 TTTTGATTTTAA
26229904 TTTTGA-TTTAA
1 TTTTGATTTTAA
26229915 TT
1 TT
26229917 ATTTTTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 7 0.30
12 16 0.70
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (12 bp):
TTTTGATTTTAA
Found at i:26232338 original size:19 final size:19
Alignment explanation
Indices: 26232314--26232365 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
26232304 CGAATGTTAC
* *
26232314 CTTGATGTGTTTTTTTTTT
1 CTTGATGTGTTTGTATTTT
**
26232333 CTTGATGTGAATGTATTTT
1 CTTGATGTGTTTGTATTTT
26232352 CTTGTATGTGTTTG
1 CTTG-ATGTGTTTG
26232366 AGATTGATCT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.12, C:0.06, G:0.21, T:0.62
Consensus pattern (19 bp):
CTTGATGTGTTTGTATTTT
Found at i:26234171 original size:51 final size:52
Alignment explanation
Indices: 26234079--26234224 Score: 217
Period size: 51 Copynumber: 2.8 Consensus size: 52
26234069 GACTTGTAAA
*
26234079 AGAAGAATTCTAA-AAGAAAGAGGATTCTTAATAGGTAAGTTTGACTTACAAG
1 AGAAGAATTCTAAGAGGAAAGA-GATTCTTAATAGGTAAGTTTGACTTACAAG
*
26234131 AGAAGAATTCTAAGGGGAAAGAG-TTCTTAATAGGTAAGTTTGACTTACAAG
1 AGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGTAAGTTTGACTTACAAG
* *
26234182 A-ATAGAATTCTAAGAGGAAAGAGATTCTTAATATGCAAGTTTG
1 AGA-AGAATTCTAAGAGGAAAGAGATTCTTAATAGGTAAGTTTG
26234225 TATGGTTATA
Statistics
Matches: 86, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
50 1 0.01
51 48 0.56
52 31 0.36
53 6 0.07
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.28
Consensus pattern (52 bp):
AGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGTAAGTTTGACTTACAAG
Found at i:26235159 original size:52 final size:52
Alignment explanation
Indices: 26235088--26235244 Score: 192
Period size: 52 Copynumber: 3.0 Consensus size: 52
26235078 TGGACAAGAA
* * * *
26235088 GACTTGCAAAAGAAGAATTCTAAAAGAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGTAAGAGAAAAATTCTAAAAGAAAGAGGATTCTTAATAGGCAAGTTT
* * *
26235140 GACTTGTAAGAGAAAAATTCTAAAAGAAAAAAGATTCTTAATAGGCAAATTT
1 GACTTGTAAGAGAAAAATTCTAAAAGAAAGAGGATTCTTAATAGGCAAGTTT
* * *
26235192 GACTTATAGGA-AAAGAATTCTAAGAGGAAAG-GGATTCTTAATAGGCAAGTTT
1 GACTTGTAAGAGAAA-AATTCTAA-AAGAAAGAGGATTCTTAATAGGCAAGTTT
26235244 G
1 G
26235245 TATGGTTATA
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
51 3 0.03
52 82 0.91
53 5 0.06
ACGTcount: A:0.45, C:0.08, G:0.21, T:0.27
Consensus pattern (52 bp):
GACTTGTAAGAGAAAAATTCTAAAAGAAAGAGGATTCTTAATAGGCAAGTTT
Found at i:26236246 original size:52 final size:52
Alignment explanation
Indices: 26236107--26236252 Score: 159
Period size: 52 Copynumber: 2.8 Consensus size: 52
26236097 CGGACAAGAA
* * *
26236107 GACTTACAAAAGAAGAA-TTTAAAAAAAAAAAGGATTCTTAATAGGTAAGTTT
1 GACTTACAAAAGAAGAATTTTAAGAGAAAAAA-GATTCTTAATAGGTAAATTT
* ** * * * * * *
26236159 AACTTGTAATAGAAGAATTCTAAGGGGAAAGAGATTTTTAATAGGTAAATTT
1 GACTTACAAAAGAAGAATTTTAAGAGAAAAAAGATTCTTAATAGGTAAATTT
*
26236211 GACTTACAAAAGAAAAATTTTAAGAGAAAAAAGATTCTTAAT
1 GACTTACAAAAGAAGAATTTTAAGAGAAAAAAGATTCTTAAT
26236253 GGGCAAGTTT
Statistics
Matches: 71, Mismatches: 22, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
52 63 0.89
53 8 0.11
ACGTcount: A:0.49, C:0.05, G:0.16, T:0.29
Consensus pattern (52 bp):
GACTTACAAAAGAAGAATTTTAAGAGAAAAAAGATTCTTAATAGGTAAATTT
Found at i:26238131 original size:971 final size:968
Alignment explanation
Indices: 26236171--26239226 Score: 3588
Period size: 971 Copynumber: 3.1 Consensus size: 968
26236161 CTTGTAATAG
** * * * *
26236171 AAGAATTCTAAGGGGAAAG-AGATTTTTAATAGGTAAATTTGACTTACAAAAGAAAAATTTTAAG
1 AAGAATTCTAA-AAGAAAGAAGATTCTTAATAGGTAAGTTTGACTTAC-AAAGAAGAATTCTAAG
* * **
26236235 A-GAAAAAAGATTCTTAATGGGCAAGTTTGTATGGTTATAAACA-A-GTGAAGTCTCTACAATAT
64 AGGAAAAAA-ATTCTTAATGGGCAAGTTTGTATAGTTATAAA-ATAGGTGAAGTCTCTATAAGGT
** * * *
26236297 TT-GATATGAGAAAAGTATGTAAGAGAGTTGTAGGGTTTTGTGGGATAGACACCCAATAGGAGTA
127 TTAG-TATGAGAAAAAAATGTAAGAGAGTTGTAGGATTTTGTGAGATAGACACCCCATAGGAGTA
* * * * * *
26236361 TTGAGGCTCTACGTCTTATGAGTGTATATGTTTGTTTATAAGTGGACTAGAAGAGACTAAGAGGG
191 TTGAGGCTCTACGTCTTATGGGTGTGTATGTTTGTTTGTGAGTGGACTAGAGGAGACTGAGAGGG
* *
26236426 TCCATATAGGTATGATGTATGGGAGCATATGGGTATGTGTTTGGTTATGTTGAAAAGGTGCACAA
256 TCCACATAGGTATGATGTAT-GGAGCATATGGGTATGTGTTTGGTTATGTTGAAAGGGTGCACAA
*
26236491 GGGTTT-GAGTTTGTGTTTGTTTGGGTTAAGAATACTTCATAGGACTA-AAGAAGATTGAGAGTG
320 GGGTTTAG-GTTTGTGTTTGTTTGGGTTGAGAATACTTCATAGGACTAGAAG-AGATTGAGAGTG
* * * *
26236554 TCTTATTAGTATTGATTATTGAGTGAGACAGATGATTTGATGTATGTTTGTAATTCTCTATAACT
383 TCTTATGAGTATTGATTGTTGAGTGAGGCAGATGATTTGATGTATATTTGTAATTCTCTATAACT
* * * *
26236619 AGTGGATCTTGTTTCTCATCCGTGGACGTAGTTTGATTGGATC-AAACAATGTTAAATTATTGTC
448 AGTGGATCTTGTTTCTCATTCGTAGACGTAGGTTGATTGGATCGAAAC-ACGTTAAATTATTGTC
* * * * *
26236683 TCTTATGTATTTGATTTATTATTTGATTTTGCTTCCGTTAGTGTGACTGGATTGGAGGCTTTTAG
512 TCTTGTGTGTTTGATTTATTATTTGATTTCGCTTCCGTTAGTGTGATTAGATTGGAGGCTTTTAG
* * *
26236748 CCCAACAAATGGTATCATAG-TAGTGGTGTTCTCCAACAAGTGATATCAGAGCTGATGGTTCGAG
577 CCCAACAAATAGTATCA-AGCTA-TGGTATTCCCCAACAAGTGATATCAGAGCTGATGGTTCGAG
** * * ** *
26236812 ACATGAAAAGAGTTGATAGTTTGAGATATGGGAAGAGCTTAGTTTGAGACTTGAGAAA-AAGTAA
640 ACATGGGAAGAGTTGACAGTTCGAGATATAAGAAGAGCTTGGTTTGAGACTTGA-AAAGAAGTAA
* *
26236876 GCTTAGAAGAACTCGATTCAAGAGAAGAGTTCGAGTTTAAGTTTTGAAGATTGAAGATCAGTTTG
704 GCTTAGAAGAGCTCGATTCAAGAGAAAAGTTCGAGTTTAAGTTTTGAAGATTGAAGATCAGTTTG
* * * * * *
26236941 TATGAAGCATGAAGACACACAAAAGAAGATGAGTGTGAGACTTCTATTATAGATGGAGCCAAGCA
769 TATGAAGCATGAAGACACACAAAAAAAGATGAGTGTAAGACTTCCATTATAGGTGAAACCAAGCA
* * * * *
26237006 TATCTAGTATAAAGACAGATGATTGATGAAATTTAAGTCAAGGTGAAGATTGTTAGAAATATTGA
834 TATCTAGTATGAAGACAGATGATTGATGAAATTTGAGTCAAAGTGGAGATTGTTAGGAATATTGA
* * * * **
26237071 CTCAAATCTTATAAGAGAGTTATTTGAGATTTGTTAGATATTGCTTGATAGACAAGAAAACTTGT
899 CTCAAATCTCATAAGAGATTTGTTTGAGATTTGTTAGATATTGCTTGATGGACAAGAAAACTTAC
26237136 AAAAA
964 AAAAA
* * * *
26237141 GAGAATTTTAAATGAAAGAAGATTCTTAATAGGTAAGTTTGACTTACAGAAGAAGAATTCTAAAA
1 AAGAATTCTAAAAGAAAGAAGATTCTTAATAGGTAAGTTTGACTTACA-AAGAAGAATTCTAAGA
26237206 GGAAAAAAATTCTTAATGGGCAAGTTTGTATAGTTATAAAATAGGTGAAGTCTCTATAAGGTTTA
65 GGAAAAAAATTCTTAATGGGCAAGTTTGTATAGTTATAAAATAGGTGAAGTCTCTATAAGGTTTA
* * * *
26237271 GTATGAGAAAAAAATGTAAGAGAGTTGTA-GAGTTTTATGAGATAAATACCCCATAAGAGTATTG
130 GTATGAGAAAAAAATGTAAGAGAGTTGTAGGA-TTTTGTGAGATAGACACCCCATAGGAGTATTG
* * * * *
26237335 AGGCTCTATGTCTTATGGGTATGTATGTTTGTTTGTGAGTAGATTAGAGGAAACTGAGAGGGTCC
194 AGGCTCTACGTCTTATGGGTGTGTATGTTTGTTTGTGAGTGGACTAGAGGAGACTGAGAGGGTCC
** *
26237400 ACATAGGTATGATGTATGGAAGCATATAAGTATGTGTTTGGTTATTTTGAAAGGGTGCACAAGGG
259 ACATAGGTATGATGTATGG-AGCATATGGGTATGTGTTTGGTTATGTTGAAAGGGTGCACAAGGG
* *
26237465 TTTAGGTTTGTGTTTGTTTGGGTTGAAAATACTTCATAGAACTAGAAGAGATTGAGAGTGTCTTA
323 TTTAGGTTTGTGTTTGTTTGGGTTGAGAATACTTCATAGGACTAGAAGAGATTGAGAGTGTCTTA
* * * *
26237530 TGAGTATTAATTGTTGAGTGAGACAGATGATTTGATGTATGTTTGTAATTCTTTATAACTAGTGG
388 TGAGTATTGATTGTTGAGTGAGGCAGATGATTTGATGTATATTTGTAATTCTCTATAACTAGTGG
* * * * *
26237595 ATCTTGTTTCTTATTCGTGGACGTAAGCTGATTGGATCGAATCACGTTAAATTATTGTCTCTTGT
453 ATCTTGTTTCTCATTCGTAGACGTAGGTTGATTGGATCGAAACACGTTAAATTATTGTCTCTTGT
* ** * * * *
26237660 GTGTTTGATTTATTATTTGATTTTGCTTCTATTAGTATGATTAGATTAGATGCTTTTAACCCAAC
518 GTGTTTGATTTATTATTTGATTTCGCTTCCGTTAGTGTGATTAGATTGGAGGCTTTTAGCCCAAC
* *
26237725 AAATAGTATCAAAGCTATGGTATTCCCCAATAAGTGGTATCAGAGCTGATGGTTCGAGACATGGG
583 AAATAGTATC-AAGCTATGGTATTCCCCAACAAGTGATATCAGAGCTGATGGTTCGAGACATGGG
*
26237790 AAGAGTTGACAGTTCGAGATATAAGAAGAGCTTGGTTTGAGACATGAAAAGAAGTAAGCTTAGAA
647 AAGAGTTGACAGTTCGAGATATAAGAAGAGCTTGGTTTGAGACTTGAAAAGAAGTAAGCTTAGAA
* * * * *
26237855 GAGCTTGATTCAAGAGAAAAGTTCGAGTTTAAGTCTTGAAGATTGAAAATTAGTTTGTATGAAGT
712 GAGCTCGATTCAAGAGAAAAGTTCGAGTTTAAGTTTTGAAGATTGAAGATCAGTTTGTATGAAGC
* * * * *
26237920 ATGAAGACACATAAGAGAAGATTAGTGTGAGACTTCCATTATAGGTGAAACCAAGCATATCTAGT
777 ATGAAGACACACAAAAAAAGATGAGTGTAAGACTTCCATTATAGGTGAAACCAAGCATATCTAGT
* * *
26237985 ATGAAGACAGATGATTGATGAAATTTGAGTCAAAGTAGAGATTGTTGGGAATATTGATTCAAATC
842 ATGAAGACAGATGATTGATGAAATTTGAGTCAAAGTGGAGATTGTTAGGAATATTGACTCAAATC
* *
26238050 TCATAAGAGATTTGTTTGAGATTTGTTAGATATTGCTTGATGGACAAGAAGACTTGCAAAAA
907 TCATAAGAGATTTGTTTGAGATTTGTTAGATATTGCTTGATGGACAAGAAAACTTACAAAAA
* * *
26238112 AAGAATTCTAAAAGAAAGAAGATTCTTAATAGGTAAGTTTGACTTGCAAGAGATGAATTCTAAGG
1 AAGAATTCTAAAAGAAAGAAGATTCTTAATAGGTAAGTTTGACTTACAA-AGAAGAATTCTAAGA
* * * * *
26238177 GGAAAAAGATTTTTAATAGGCAAGTTTGACTTATAGAAGAAGAATTTTAAGAGGAAAAGGATTCT
65 GGAAAAAAATTCTTAATGGGCAAGTTTG---TAT------AG--TTAT-A-A--AATAGG-----
* * ** *
26238242 TAATGGGCAAGTTTGTATGATTATAAATAGGTGAAGTCTCTACAAGATTTGGTATGAGAAAAAGA
110 ---T--G-AA----GTCT--CTAT--A-AGGTTTAG----T--ATGA--------GA-AAAAA-A
* *
26238307 TATAAGAGAGTTGTAGGATTTTGTGAGATAGACACCCCATAAGAGTATTG-GAGCTCTACGTCTT
144 TGTAAGAGAGTTGTAGGATTTTGTGAGATAGACACCCCATAGGAGTATTGAG-GCTCTACGTCTT
* * * *
26238371 ATGGGTGTGTATATTTATTTGTGAGTGGA-TCAAAAGAGACTGAGAGGGTCCACATAGGTATGAT
208 ATGGGTGTGTATGTTTGTTTGTGAGTGGACT-AGAGGAGACTGAGAGGGTCCACATAGGTATGAT
* * * * * * *
26238435 GTATGAAAACATATGGGTATGTGTTTGGTTATGTTGAAAGAGTGCACAAGAGTTTTGGTTTTTAT
272 GTATG-GAGCATATGGGTATGTGTTTGGTTATGTTGAAAGGGTGCACAAGGGTTTAGGTTTGTGT
* * ** *
26238500 TTGTTTAGGTTGAGAATATTTCATAAAACTAGAGGAGATTGAGAGTGTCTTATGAGTATTGATTG
336 TTGTTTGGGTTGAGAATACTTCATAGGACTAGAAGAGATTGAGAGTGTCTTATGAGTATTGATTG
* *
26238565 TTGAGTGAGGTAGATGATTTGATGTATATTTGTAATTCTCTACAACTAGTGGATCTTGTTTCTCA
401 TTGAGTGAGGCAGATGATTTGATGTATATTTGTAATTCTCTATAACTAGTGGATCTTGTTTCTCA
* * *
26238630 -TCTGTAGACGTAGGTTGATTGGATCGAACCACGTTAAATTATTTTCTCTTGTTTGTTTGATTTA
466 TTC-GTAGACGTAGGTTGATTGGATCGAAACACGTTAAATTATTGTCTCTTGTGTGTTTGATTTA
* * * *
26238694 TTATTTGATTTCGCTTCCGTT-GATGTGATTGGATTGGAGGCTTTTAGCCTAACAAATGGTATTA
530 TTATTTGATTTCGCTTCCGTTAG-TGTGATTAGATTGGAGGCTTTTAGCCCAACAAATAGTATCA
* * * * * ** *
26238758 GAGTTGTGGTGTTCCCTAACAAGTGATATCAAAGCTGATGGTTTAAGACATGGGAAGAGTTGAAA
594 -AGCTATGGTATTCCCCAACAAGTGATATCAGAGCTGATGGTTCGAGACATGGGAAGAGTTGACA
** * * *
26238823 GTTCGAGATATGGGAAGAGCTTGGTTTGAGACTTGGAAAGATGTAAGCTTAGAGGAGCTCGATTC
658 GTTCGAGATATAAGAAGAGCTTGGTTTGAGACTTGAAAAGAAGTAAGCTTAGAAGAGCTCGATTC
** *
26238888 AAGAGAAAAGTTTAAGTTTAAGTTTTGAGGATTGAAGATCAGTTTGTATGAAGCATGAAGACACA
723 AAGAGAAAAGTTCGAGTTTAAGTTTTGAAGATTGAAGATCAGTTTGTATGAAGCATGAAGACACA
* * * * * *
26238953 CAAGAAAAGATAAGTGCAAGACTTCCATTGTAGGT-AAAGCCAAGCATGTCTAGTATGAAGATAG
788 CAAAAAAAGATGAGTGTAAGACTTCCATTATAGGTGAAA-CCAAGCATATCTAGTATGAAGACAG
* * * *
26239017 ATGATTGATGAAATTTGAGTCAAGGTGGAGATTGTTAGGAATATTAACTCAAATTTTATAAGAGA
852 ATGATTGATGAAATTTGAGTCAAAGTGGAGATTGTTAGGAATATTGACTCAAATCTCATAAGAGA
* *
26239082 TTTGTTTGAGATTTGTTAGATATTGCTTGATGGATAAGAAAACTTACAAAAG
917 TTTGTTTGAGATTTGTTAGATATTGCTTGATGGACAAGAAAACTTACAAAAA
* * *
26239134 AAGAATTCTAAAAGAAAGAAGATTTTTAATAGGTAAGTTTGACTTACAAAAGAAAAATTCTAAGG
1 AAGAATTCTAAAAGAAAGAAGATTCTTAATAGGTAAGTTTGACTTAC-AAAGAAGAATTCTAAGA
** *
26239199 GGAAATGAATTCTTAATAGGCAAGTTTG
65 GGAAAAAAATTCTTAATGGGCAAGTTTG
26239227 ACTTATAGAA
Statistics
Matches: 1789, Mismatches: 222, Indels: 98
0.85 0.11 0.05
Matches are distributed among these distances:
969 7 0.00
970 87 0.05
971 831 0.46
972 11 0.01
974 3 0.00
980 2 0.00
982 3 0.00
983 1 0.00
984 1 0.00
986 5 0.00
994 1 0.00
996 1 0.00
997 2 0.00
1001 3 0.00
1003 3 0.00
1005 1 0.00
1006 6 0.00
1010 1 0.00
1012 3 0.00
1020 2 0.00
1021 14 0.01
1022 797 0.45
1023 4 0.00
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (968 bp):
AAGAATTCTAAAAGAAAGAAGATTCTTAATAGGTAAGTTTGACTTACAAAGAAGAATTCTAAGAG
GAAAAAAATTCTTAATGGGCAAGTTTGTATAGTTATAAAATAGGTGAAGTCTCTATAAGGTTTAG
TATGAGAAAAAAATGTAAGAGAGTTGTAGGATTTTGTGAGATAGACACCCCATAGGAGTATTGAG
GCTCTACGTCTTATGGGTGTGTATGTTTGTTTGTGAGTGGACTAGAGGAGACTGAGAGGGTCCAC
ATAGGTATGATGTATGGAGCATATGGGTATGTGTTTGGTTATGTTGAAAGGGTGCACAAGGGTTT
AGGTTTGTGTTTGTTTGGGTTGAGAATACTTCATAGGACTAGAAGAGATTGAGAGTGTCTTATGA
GTATTGATTGTTGAGTGAGGCAGATGATTTGATGTATATTTGTAATTCTCTATAACTAGTGGATC
TTGTTTCTCATTCGTAGACGTAGGTTGATTGGATCGAAACACGTTAAATTATTGTCTCTTGTGTG
TTTGATTTATTATTTGATTTCGCTTCCGTTAGTGTGATTAGATTGGAGGCTTTTAGCCCAACAAA
TAGTATCAAGCTATGGTATTCCCCAACAAGTGATATCAGAGCTGATGGTTCGAGACATGGGAAGA
GTTGACAGTTCGAGATATAAGAAGAGCTTGGTTTGAGACTTGAAAAGAAGTAAGCTTAGAAGAGC
TCGATTCAAGAGAAAAGTTCGAGTTTAAGTTTTGAAGATTGAAGATCAGTTTGTATGAAGCATGA
AGACACACAAAAAAAGATGAGTGTAAGACTTCCATTATAGGTGAAACCAAGCATATCTAGTATGA
AGACAGATGATTGATGAAATTTGAGTCAAAGTGGAGATTGTTAGGAATATTGACTCAAATCTCAT
AAGAGATTTGTTTGAGATTTGTTAGATATTGCTTGATGGACAAGAAAACTTACAAAAA
Found at i:26238186 original size:52 final size:52
Alignment explanation
Indices: 26238112--26238256 Score: 170
Period size: 52 Copynumber: 2.8 Consensus size: 52
26238102 CTTGCAAAAA
* *
26238112 AAGAATTCTAA-AAGAAAGAAGATTCTTAATAGGTAAGTTTGACTTGCA-AG-AG
1 AAGAATTCTAAGAGGAAA-AAGATTCTTAATAGGCAAGTTTGACTT--ATAGAAG
* * *
26238164 ATGAATTCTAAGGGGAAAAAGATTTTTAATAGGCAAGTTTGACTTATAGAAG
1 AAGAATTCTAAGAGGAAAAAGATTCTTAATAGGCAAGTTTGACTTATAGAAG
* * *
26238216 AAGAATTTTAAGAGGAAAAGGATTCTTAATGGGCAAGTTTG
1 AAGAATTCTAAGAGGAAAAAGATTCTTAATAGGCAAGTTTG
26238257 TATGATTATA
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
50 1 0.01
51 2 0.03
52 72 0.91
53 4 0.05
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.29
Consensus pattern (52 bp):
AAGAATTCTAAGAGGAAAAAGATTCTTAATAGGCAAGTTTGACTTATAGAAG
Found at i:26239215 original size:52 final size:51
Alignment explanation
Indices: 26239123--26239278 Score: 197
Period size: 52 Copynumber: 3.0 Consensus size: 51
26239113 GGATAAGAAA
* * *
26239123 ACTTACAAAAGAAGAATTCTAAAAGAAAGAAGATTTTTAATAGGTAAGTTTG
1 ACTTACAAAAGAAGAATTCTAAGAGAAAG-AGATTCTTAATAGGCAAGTTTG
* *
26239175 ACTTACAAAAGAAAAATTCTAAGGGGAAATGA-ATTCTTAATAGGCAAGTTTG
1 ACTTACAAAAGAAGAATTCTAA-GAGAAA-GAGATTCTTAATAGGCAAGTTTG
* * *
26239227 ACTTATAGAAGAAGAATTCTAAGAGAAAAGAGATTCTTAATGGGCAAGTTTG
1 ACTTACAAAAGAAGAATTCTAAGAG-AAAGAGATTCTTAATAGGCAAGTTTG
26239279 TATGATTATA
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
51 4 0.04
52 80 0.89
53 5 0.06
54 1 0.01
ACGTcount: A:0.45, C:0.08, G:0.20, T:0.28
Consensus pattern (51 bp):
ACTTACAAAAGAAGAATTCTAAGAGAAAGAGATTCTTAATAGGCAAGTTTG
Found at i:26240219 original size:52 final size:52
Alignment explanation
Indices: 26240118--26240273 Score: 194
Period size: 52 Copynumber: 3.0 Consensus size: 52
26240108 TGGACAAGAA
* * *
26240118 GACTTACAAAAGAAGAATTCTAA-A-AAAAGATGATTCTTAATAGGTAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGGAAAGA-GATTCTTAATAGGCAAGTTT
* *
26240169 GACTTGCAAGAGAAGAATTCTAAGGGGAAATG-GATTCTTAATAGGCAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGGAAA-GAGATTCTTAATAGGCAAGTTT
* *
26240221 GACTTATATGAGAAGAATTCTAAGAGGAAAGAGATTCTTAAT-GGACAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGG-CAAGTTT
26240273 G
1 G
26240274 TATGATTATA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
51 24 0.26
52 63 0.69
53 3 0.03
54 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (52 bp):
GACTTACAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
Found at i:26244067 original size:3 final size:3
Alignment explanation
Indices: 26244059--26244084 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26244049 CTTATGCAAA
26244059 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
26244085 CAGTAGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:26256182 original size:18 final size:18
Alignment explanation
Indices: 26256159--26256208 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
26256149 ATTTTTTAAT
*
26256159 AAATTTTAATTAATTTTA
1 AAATTTTAATTAATTGTA
26256177 AAA-TTT-ATTAAAATTGTA
1 AAATTTTAATT--AATTGTA
*
26256195 AAATTTTAAATAAT
1 AAATTTTAATTAAT
26256209 CAAATACACC
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
16 3 0.12
17 3 0.12
18 15 0.58
19 3 0.12
20 2 0.08
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
AAATTTTAATTAATTGTA
Found at i:26263647 original size:3 final size:3
Alignment explanation
Indices: 26263639--26263692 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
26263629 TTCTAAAAAT
26263639 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26263687 TTA TTA
1 TTA TTA
26263693 CACTAAAATG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26264642 original size:15 final size:15
Alignment explanation
Indices: 26264622--26264650 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26264612 ATCCCATCCT
26264622 CATAGATTTTGCTTG
1 CATAGATTTTGCTTG
26264637 CATAGATTTTGCTT
1 CATAGATTTTGCTT
26264651 ACTTTTCTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.17, T:0.48
Consensus pattern (15 bp):
CATAGATTTTGCTTG
Found at i:26264969 original size:3 final size:3
Alignment explanation
Indices: 26264961--26264997 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
26264951 ATCCTCAGAG
26264961 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
26264998 AATAAGTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:26266394 original size:17 final size:17
Alignment explanation
Indices: 26266374--26266408 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
26266364 TTTTTCAAGG
26266374 TTCTTTCTTTTTCTCTT
1 TTCTTTCTTTTTCTCTT
* *
26266391 TTCTTTTTTTTTTTCTT
1 TTCTTTCTTTTTCTCTT
26266408 T
1 T
26266409 GGTTTCCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (17 bp):
TTCTTTCTTTTTCTCTT
Found at i:26267438 original size:8 final size:8
Alignment explanation
Indices: 26267427--26267564 Score: 86
Period size: 8 Copynumber: 16.9 Consensus size: 8
26267417 AAGAAAGCTC
26267427 TTTTTTTG
1 TTTTTTTG
*
26267435 -TTTTTTA
1 TTTTTTTG
26267442 TTTTTTTG
1 TTTTTTTG
* *
26267450 ATTTCTTG
1 TTTTTTTG
**
26267458 ATTTCTTGGG
1 -TTT-TTTTG
26267468 TTTTTTTG
1 TTTTTTTG
*
26267476 TTTGTTTG
1 TTTTTTTG
*
26267484 -TTTGTTG
1 TTTTTTTG
26267491 TTTGCTTTTG
1 TTT--TTTTG
26267501 TTTTGTTT-
1 TTTT-TTTG
26267509 TGTTTTTTG
1 T-TTTTTTG
26267518 -TTTTTTG
1 TTTTTTTG
*
26267525 TATTTGTTG
1 T-TTTTTTG
*
26267534 TTTTATTG
1 TTTTTTTG
*
26267542 TTTTGTTG
1 TTTTTTTG
*
26267550 TTTTGTTG
1 TTTTTTTG
26267558 TTTTTTT
1 TTTTTTT
26267565 TAATGAATTT
Statistics
Matches: 101, Mismatches: 18, Indels: 22
0.72 0.13 0.16
Matches are distributed among these distances:
7 18 0.18
8 56 0.55
9 18 0.18
10 9 0.09
ACGTcount: A:0.04, C:0.02, G:0.17, T:0.77
Consensus pattern (8 bp):
TTTTTTTG
Found at i:26267448 original size:16 final size:16
Alignment explanation
Indices: 26267427--26267565 Score: 54
Period size: 17 Copynumber: 8.4 Consensus size: 16
26267417 AAGAAAGCTC
26267427 TTTTTTTGTTTTTTA-
1 TTTTTTTGTTTTTTAT
*
26267442 TTTTTTTGATTTCTTGAT
1 TTTTTTTG-TTT-TTTAT
* **
26267460 TTCTTGGGTTTTTT-T
1 TTTTTTTGTTTTTTAT
* * *
26267475 GTTTGTTTGTTTGTTGT
1 -TTTTTTTGTTTTTTAT
*
26267492 TTGCTTTTGTTTTGTT-T
1 TT-TTTTTGTTTT-TTAT
*
26267509 TGTTTTTTGTTTTTTGT
1 T-TTTTTTGTTTTTTAT
* *
26267526 ATTTGTTG--TTTTAT
1 TTTTTTTGTTTTTTAT
*
26267540 TGTTTTGTTGTTTTGTTGT
1 T-TTTT-TTGTTTT-TTAT
26267559 TTTTTTT
1 TTTTTTT
26267566 AATGAATTTG
Statistics
Matches: 90, Mismatches: 20, Indels: 26
0.66 0.15 0.19
Matches are distributed among these distances:
14 5 0.06
15 12 0.13
16 27 0.30
17 28 0.31
18 14 0.16
19 4 0.04
ACGTcount: A:0.04, C:0.02, G:0.17, T:0.77
Consensus pattern (16 bp):
TTTTTTTGTTTTTTAT
Found at i:26267481 original size:4 final size:4
Alignment explanation
Indices: 26267467--26267525 Score: 52
Period size: 4 Copynumber: 14.5 Consensus size: 4
26267457 GATTTCTTGG
*
26267467 GTTT TTTT GTTT GTTT GTTT G-TT GTTT GCTTTT GTTTT GTTTT GTTT
1 GTTT GTTT GTTT GTTT GTTT GTTT GTTT G--TTT G-TTT G-TTT GTTT
26267514 -TTT GTTT -TTT GT
1 GTTT GTTT GTTT GT
26267526 ATTTGTTGTT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
3 9 0.19
4 25 0.52
5 10 0.21
6 4 0.08
ACGTcount: A:0.00, C:0.02, G:0.20, T:0.78
Consensus pattern (4 bp):
GTTT
Found at i:26267499 original size:27 final size:27
Alignment explanation
Indices: 26267471--26267520 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
26267461 TCTTGGGTTT
26267471 TTTTG-TTTG-TTTGTTTGTTGTTTGC
1 TTTTGTTTTGTTTTGTTTGTTGTTTGC
*
26267496 TTTTGTTTTGTTTTGTTTTTTGTTT
1 TTTTGTTTTGTTTTGTTTGTTGTTT
26267521 TTTGTATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.23
26 4 0.18
27 13 0.59
ACGTcount: A:0.00, C:0.02, G:0.20, T:0.78
Consensus pattern (27 bp):
TTTTGTTTTGTTTTGTTTGTTGTTTGC
Found at i:26267506 original size:30 final size:30
Alignment explanation
Indices: 26267471--26267552 Score: 84
Period size: 30 Copynumber: 2.8 Consensus size: 30
26267461 TCTTGGGTTT
26267471 TTTTGTTTGTTTGTTTGTTGTTTGCT-TTTG
1 TTTTGTTTGTTTGTTTGTTGTTTG-TATTTG
*
26267501 TTTTGTTTTGTTT-TTTGTTTTTTGTATTTG
1 TTTTG-TTTGTTTGTTTGTTGTTTGTATTTG
26267531 --TTGTTT-TATTGTTTTGTTGTTT
1 TTTTGTTTGT-TTG-TTTGTTGTTT
26267553 TGTTGTTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
26 1 0.02
27 5 0.11
28 3 0.07
29 10 0.22
30 19 0.42
31 7 0.16
ACGTcount: A:0.02, C:0.01, G:0.20, T:0.77
Consensus pattern (30 bp):
TTTTGTTTGTTTGTTTGTTGTTTGTATTTG
Found at i:26267542 original size:24 final size:23
Alignment explanation
Indices: 26267471--26267563 Score: 95
Period size: 23 Copynumber: 4.0 Consensus size: 23
26267461 TCTTGGGTTT
*
26267471 TTTTGTT-TGTTTGTTTGTTGTTTG
1 TTTTGTTGT-TTTG-TTGTTTTTTG
26267495 CTTTTGTT-TTGTT-TTGTTTTTTG
1 -TTTTGTTGTT-TTGTTGTTTTTTG
26267518 TTTT-TTGTATTTGTTGTTTTATTG
1 TTTTGTTGT-TTTGTTGTTTT-TTG
26267542 TTTTGTTGTTTTGTTGTTTTTT
1 TTTTGTTGTTTTGTTGTTTTTT
26267564 TTAATGAATT
Statistics
Matches: 61, Mismatches: 1, Indels: 14
0.80 0.01 0.18
Matches are distributed among these distances:
21 2 0.03
22 7 0.11
23 19 0.31
24 19 0.31
25 14 0.23
ACGTcount: A:0.02, C:0.01, G:0.19, T:0.77
Consensus pattern (23 bp):
TTTTGTTGTTTTGTTGTTTTTTG
Found at i:26267847 original size:49 final size:48
Alignment explanation
Indices: 26267760--26267995 Score: 197
Period size: 49 Copynumber: 4.7 Consensus size: 48
26267750 CTCCTCTAAT
* * *
26267760 CAGAGGCCTTGAAACTTTTGAAAAGATTCTTGTCTAAAAATGGCTCCCCTCAAA
1 CAGAGGCTTTGAAAC-TTT--AAA-A-TCTTGTTTAAAAATGACTCCCC-CAAA
* * * *
26267814 CAAAGGTTTTAAAACTTTAAAATCTTGTTTAAAAAT-AGCTCATCCCAAA
1 CAGAGGCTTTGAAACTTTAAAATCTTGTTTAAAAATGA-CTC-CCCCAAA
* *
26267863 CAGAGGATTTGAAACTTTAAAATCCTT-TTTGAAAATGACTCCCCCTAAA
1 CAGAGGCTTTGAAACTTTAAAAT-CTTGTTTAAAAATGACTCCCCC-AAA
* * ** * *
26267912 TAGAGGCTTTGAAACTTTAAAAGCCTTGTTCGAAAATGACTATCCCTAAA
1 CAGAGGCTTTGAAACTTTAAAA-TCTTGTTTAAAAATGACT-CCCCCAAA
* *
26267962 TAGAGGCTTTGAAACTTTAAAATCTTATTTAAAA
1 CAGAGGCTTTGAAACTTTAAAATCTTGTTTAAAA
26267996 TGCCTTATGA
Statistics
Matches: 152, Mismatches: 22, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
48 3 0.02
49 85 0.56
50 44 0.29
51 6 0.04
53 3 0.02
54 11 0.07
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (48 bp):
CAGAGGCTTTGAAACTTTAAAATCTTGTTTAAAAATGACTCCCCCAAA
Found at i:26267964 original size:50 final size:49
Alignment explanation
Indices: 26267825--26267997 Score: 201
Period size: 49 Copynumber: 3.5 Consensus size: 49
26267815 AAAGGTTTTA
* * * *
26267825 AAACTTTAAAATCTTGTTTAAAAAT-AGCTCATCCC-AAACAGAGGATTTG
1 AAACTTTAAAACCTTGTTTGAAAATGA-CT-ATCCCTAAATAGAGGCTTTG
**
26267874 AAACTTTAAAATCCTT-TTTGAAAATGACTCCCCCTAAATAGAGGCTTTG
1 AAACTTTAAAA-CCTTGTTTGAAAATGACTATCCCTAAATAGAGGCTTTG
*
26267923 AAACTTTAAAAGCCTTGTTCGAAAATGACTATCCCTAAATAGAGGCTTTG
1 AAACTTTAAAA-CCTTGTTTGAAAATGACTATCCCTAAATAGAGGCTTTG
* *
26267973 AAACTTTAAAATCTTATTT-AAAATG
1 AAACTTTAAAACCTTGTTTGAAAATG
26267998 CCTTATGACA
Statistics
Matches: 107, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
48 9 0.08
49 53 0.50
50 45 0.42
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (49 bp):
AAACTTTAAAACCTTGTTTGAAAATGACTATCCCTAAATAGAGGCTTTG
Found at i:26268950 original size:30 final size:31
Alignment explanation
Indices: 26268915--26268985 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
26268905 GAGTCTACCT
*
26268915 TTATTTTTTAT-TCATTGTTTT-TTTTTCCTC
1 TTATTTTTT-TCTCATTATTTTGTTTTTCCTC
* *
26268945 TTATTTTTTTCTCTTTATTTTGTTTTTCCTT
1 TTATTTTTTTCTCATTATTTTGTTTTTCCTC
*
26268976 TTTTTTTTTT
1 TTATTTTTTT
26268986 AATTTAACCT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.03
30 17 0.49
31 17 0.49
ACGTcount: A:0.07, C:0.11, G:0.03, T:0.79
Consensus pattern (31 bp):
TTATTTTTTTCTCATTATTTTGTTTTTCCTC
Found at i:26268984 original size:14 final size:14
Alignment explanation
Indices: 26268912--26268985 Score: 67
Period size: 14 Copynumber: 5.0 Consensus size: 14
26268902 TATGAGTCTA
*
26268912 CCTTTATTTTTTATT
1 CCTTT-TTTTTTTTT
* *
26268927 CATTGTTTTTTTTT
1 CCTTTTTTTTTTTT
* *
26268941 CCTCTTATTTTTTT
1 CCTTTTTTTTTTTT
26268955 CTCTTTATTTTGTTTTT
1 C-CTTT-TTTT-TTTTT
26268972 CCTTTTTTTTTTTT
1 CCTTTTTTTTTTTT
26268986 AATTTAACCT
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
14 24 0.51
15 10 0.21
16 7 0.15
17 6 0.13
ACGTcount: A:0.07, C:0.14, G:0.03, T:0.77
Consensus pattern (14 bp):
CCTTTTTTTTTTTT
Found at i:26276158 original size:389 final size:388
Alignment explanation
Indices: 26275434--26276209 Score: 1290
Period size: 389 Copynumber: 2.0 Consensus size: 388
26275424 CTCATTTTTA
26275434 GTCAAATATGATTGTACTTGAATAGCAAGATCCCTCTATCTATGAACATATTCTTTGAAGTTTCA
1 GTCAAATATGATTGTACTTGAATAGCAAGATCCCTCTATCTATGAACATATTCTTTGAAGTTTCA
26275499 TTAGCTCTTTTATCCATATTTTACAATGACAACCTATCAAAAGCCATGTCTAATATATGCTTATA
66 TTAGCTCTTTTATCCATATTTTACAATGACAACCTATCAAAAGCCATGTCTAATATATGCTTATA
*
26275564 TTGATCTAAAAAATATCTAGCAAGATTTTTTCAAGAATGTATACAACTCCTATCTAATTTGACAT
131 TTGATCTAAAAAAGATCTAGCAAGATTTTTTCAAGAATGTATACAACTCCTATCTAATTTGACAT
* *
26275629 ATCATCTAATCACAAACCCAATGAGGCTATCTTGGAAATAGTGAATCAAAAGCTTATCATTGTCA
196 ACCATCTAATCACAAACCCAATGAGGCTATCTAGGAAATAGTGAATCAAAAGCTTATCATTGTCA
** *
26275694 GTGTAACCTACCATCTTACGATAGAACATTGTGAGATGAGTCGATGGGCATTTAGTTTTGTCATG
261 GTGTAACCTACCATCTTACGATAGAACATTGTGAGATGAGTCGATGGGCATTTAGTTTCATCATA
* *
26275759 CTTTTCAAAATC-AAGAGTTTTAAACTTCAACGAAATTACTAGACTAGGGACTAAATTGAGTTT
326 CTTCTCAAAATCAAAGAGTTTTAAACTTCAACGAAATTACTAGAC-AGGGACTAAACTGAGTTT
* *
26275822 GTCAAATGTGATTGTACTTGAGTAGCAAGATCCCT-TCATCTAT-AGACATATTCTTTGAAAGTT
1 GTCAAATATGATTGTACTTGAATAGCAAGATCCCTCT-ATCTATGA-ACATATTCTTTG-AAGTT
* **
26275885 TCATTAGCTCTTTTATCCATATTTTACAATGACAACCTATTAGGAGCCATGTCTAATATATGCTT
63 TCATTAGCTCTTTTATCCATATTTTACAATGACAACCTATCAAAAGCCATGTCTAATATATGCTT
** *
26275950 ATATTGATCTAAAAAAGATCTAGCAAGATTTTTTCAAGAATGTATGTAACTCTTATCTAATTTGA
128 ATATTGATCTAAAAAAGATCTAGCAAGATTTTTTCAAGAATGTATACAACTCCTATCTAATTTGA
* * * *
26276015 CATACCATCT-AGCTGCAGACCCAATGAGGCTGTCTAGGAAATAGTGAATCAAAAGCTTATCATT
193 CATACCATCTAATC-ACAAACCCAATGAGGCTATCTAGGAAATAGTGAATCAAAAGCTTATCATT
*
26276079 GTCAGTGTGACCTACCATCTTACGATAGAACATTGTGAGATGAGTCGATGGGCATTTAGTTTCAT
257 GTCAGTGTAACCTACCATCTTACGATAGAACATTGTGAGATGAGTCGATGGGCATTTAGTTTCAT
26276144 CATACTTCTCAAAATCAAAGAGTTTTAAACTTCAACGAAATTACTAGACAGGGACTAAACTGAGT
322 CATACTTCTCAAAATCAAAGAGTTTTAAACTTCAACGAAATTACTAGACAGGGACTAAACTGAGT
26276209 T
387 T
26276210 CGTTTGCATC
Statistics
Matches: 362, Mismatches: 21, Indels: 9
0.92 0.05 0.02
Matches are distributed among these distances:
387 2 0.01
388 53 0.15
389 275 0.76
390 32 0.09
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (388 bp):
GTCAAATATGATTGTACTTGAATAGCAAGATCCCTCTATCTATGAACATATTCTTTGAAGTTTCA
TTAGCTCTTTTATCCATATTTTACAATGACAACCTATCAAAAGCCATGTCTAATATATGCTTATA
TTGATCTAAAAAAGATCTAGCAAGATTTTTTCAAGAATGTATACAACTCCTATCTAATTTGACAT
ACCATCTAATCACAAACCCAATGAGGCTATCTAGGAAATAGTGAATCAAAAGCTTATCATTGTCA
GTGTAACCTACCATCTTACGATAGAACATTGTGAGATGAGTCGATGGGCATTTAGTTTCATCATA
CTTCTCAAAATCAAAGAGTTTTAAACTTCAACGAAATTACTAGACAGGGACTAAACTGAGTTT
Found at i:26279946 original size:3 final size:3
Alignment explanation
Indices: 26279938--26279994 Score: 51
Period size: 3 Copynumber: 19.0 Consensus size: 3
26279928 TGTTTTCCTT
* * * * * *
26279938 TTA TTA TTA ATA TTG TTG TTA TTA TTA TTA TCA TTA TTA TCA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
26279986 CTA TTA TTA
1 TTA TTA TTA
26279995 GAAAAATAAA
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:26281058 original size:42 final size:42
Alignment explanation
Indices: 26281011--26281095 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
26281001 AGAACTTATG
*
26281011 AATATTCCAATACATT-AGCGATATTTTTAGAAGACTTTTCTC
1 AATATTCCAATACATTAAG-GATATTTTTAGAAAACTTTTCTC
*
26281053 AATATTCCAATACGTTAAGGATATTTTTAGAAAACTTTTCTC
1 AATATTCCAATACATTAAGGATATTTTTAGAAAACTTTTCTC
26281095 A
1 A
26281096 CCTAAAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
42 38 0.95
43 2 0.05
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.40
Consensus pattern (42 bp):
AATATTCCAATACATTAAGGATATTTTTAGAAAACTTTTCTC
Found at i:26281915 original size:53 final size:57
Alignment explanation
Indices: 26281804--26281945 Score: 184
Period size: 53 Copynumber: 2.5 Consensus size: 57
26281794 TCCCTTTATA
*
26281804 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTCTTTGAAATTGTTATTTT
1 CAAGAAAAATTGATACTTTCAATTTTTCCTC--AAAAATTTCTTTGAAATTGTTATTTT
* * * *
26281863 CAAGGAAAATTAATACTTTCAATTTTTCTTC-AAAATTT-TTT-TAATT-TTATTTT
1 CAAGAAAAATTGATACTTTCAATTTTTCCTCAAAAATTTCTTTGAAATTGTTATTTT
*
26281916 CAAGAAAAATTGATACTTTCAGTTTTTCCT
1 CAAGAAAAATTGATACTTTCAATTTTTCCT
26281946 TACTTTCAAG
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
53 33 0.45
54 4 0.05
55 3 0.04
56 7 0.09
59 27 0.36
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (57 bp):
CAAGAAAAATTGATACTTTCAATTTTTCCTCAAAAATTTCTTTGAAATTGTTATTTT
Found at i:26281953 original size:36 final size:36
Alignment explanation
Indices: 26281913--26281981 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
26281903 TTAATTTTAT
**
26281913 TTTCAAGAAAAATTGATACTTTCAGTTTTTCCTTAC
1 TTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAC
26281949 TTTCAAGAAAAATTGATACTTTCAACTTTTCCT
1 TTTCAAGAAAAATTGATACTTTCAACTTTTCCT
26281982 CAAAAATACC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.32, C:0.17, G:0.07, T:0.43
Consensus pattern (36 bp):
TTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAC
Found at i:26282039 original size:96 final size:89
Alignment explanation
Indices: 26281860--26282041 Score: 222
Period size: 96 Copynumber: 2.0 Consensus size: 89
26281850 AAATTGTTAT
* * * *
26281860 TTTCAAGGAAAATTAATACTTTCAATTTTTCTTCAAAATTTTTTTAATTTTATTTTCAAGAAAAA
1 TTTCAAGAAAAATTAATACTTTCAACTTTTCCTCAAAATTTTTTAAATTTTATTTTCAAGAAAAA
**
26281925 TTGATACTTTCAGTTTTTCCTTAC
66 TTGATACTTTCAACTTTTCCTTAC
*
26281949 TTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTCTAAAATTTTTATTTTCA
1 TTTCAAGAAAAATTAATACTTTCAACTTTTCCTC-AAAAT---TTTT-T-AAA-TTTTATTTTCA
26282014 A-ATAAAATTGATACTTTCAACTTTTCCT
59 AGA-AAAATTGATACTTTCAACTTTTCCT
26282042 CCAAAATATT
Statistics
Matches: 78, Mismatches: 7, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
89 30 0.38
90 5 0.06
93 4 0.05
94 1 0.01
95 3 0.04
96 35 0.45
ACGTcount: A:0.34, C:0.15, G:0.04, T:0.47
Consensus pattern (89 bp):
TTTCAAGAAAAATTAATACTTTCAACTTTTCCTCAAAATTTTTTAAATTTTATTTTCAAGAAAAA
TTGATACTTTCAACTTTTCCTTAC
Found at i:26282080 original size:119 final size:119
Alignment explanation
Indices: 26281949--26282216 Score: 394
Period size: 119 Copynumber: 2.3 Consensus size: 119
26281939 TTTTCCTTAC
*
26281949 TTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTCTAAAATTTT-TATTTTC
1 TTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCATTTCTAAAATTTTGTATTTTC
* * *
26282013 AAATAAAATTGATACTTTCAACTTTTCCTCCAAAATATTTTTTTAAAATTGTTAT
66 AAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-CTTTTTAAAATTGTTAT
* * *
26282068 TTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCATTTCTGAAATTTTGTATTTTC
1 TTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCATTTCTAAAATTTTGTATTTTC
* * * * *
26282133 AAGGAAAATTGATATTTTTAATTTTTCCTCAAAAATACTTTTTAAAATTTTTAT
66 AAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTAAAATTGTTAT
* *
26282187 TTTTAAGAAAAATTGATATTTTCAACTTTT
1 TTTCAAGAAAAATTGATACTTTCAACTTTT
26282217 TCTTAAAGTA
Statistics
Matches: 133, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
119 95 0.71
120 38 0.29
ACGTcount: A:0.35, C:0.13, G:0.05, T:0.46
Consensus pattern (119 bp):
TTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCATTTCTAAAATTTTGTATTTTC
AAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTAAAATTGTTAT
Found at i:26282089 original size:59 final size:59
Alignment explanation
Indices: 26281949--26282257 Score: 363
Period size: 59 Copynumber: 5.2 Consensus size: 59
26281939 TTTTCCTTAC
* *
26281949 TTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTCTAAAATTTTTAT
1 TTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATACATTTT-TAAAATTTTTAT
** * ** *
26282009 TTTCAAATAAAATTGATACTTTCAACTTTTCCTCCAAAATATTTTTTTAAAATTGTTAT
1 TTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATACATTTTTAAAATTTTTAT
* * *
26282068 TTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCATTTCTGAAATTTTGTAT
1 TTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-ACATTTTTAAAATTTT-TAT
* * *
26282129 TTTCAAGGAAAATTGATATTTTTAATTTTTCCTCAAAAATAC-TTTTTAAAATTTTTAT
1 TTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATACATTTTTAAAATTTTTAT
* * * * * * * *
26282187 TTTTAAGAAAAATTGATATTTTCAACTTTTTCT-TAAAGTATATTTTTAAAA-TTTGAT
1 TTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATACATTTTTAAAATTTTTAT
*
26282244 CTTCAAGGAAAATT
1 TTTCAAGGAAAATT
26282258 AATATTTTAG
Statistics
Matches: 213, Mismatches: 33, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
57 21 0.10
58 40 0.19
59 59 0.28
60 53 0.25
61 40 0.19
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.46
Consensus pattern (59 bp):
TTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATACATTTTTAAAATTTTTAT
Found at i:26282694 original size:2 final size:2
Alignment explanation
Indices: 26282687--26282711 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26282677 CCTCGATTAT
26282687 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
26282712 ACAACATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:26284909 original size:3 final size:3
Alignment explanation
Indices: 26284901--26284939 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
26284891 TCTGAGATTT
* *
26284901 TTA TTA TTA TTA TTA TTA TTA TTA -AA TTA TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26284940 ATATATAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 1 0.03
3 30 0.97
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:26288793 original size:17 final size:17
Alignment explanation
Indices: 26288771--26288805 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
26288761 TATGTTGATG
26288771 GCTCTTTAGGAAAAGAT
1 GCTCTTTAGGAAAAGAT
26288788 GCTCTTTAGGAAAAGAT
1 GCTCTTTAGGAAAAGAT
26288805 G
1 G
26288806 GCTCAAGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (17 bp):
GCTCTTTAGGAAAAGAT
Found at i:26289585 original size:11 final size:12
Alignment explanation
Indices: 26289561--26289585 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26289551 TTAAATGTTT
26289561 AAAAACTTCAAA
1 AAAAACTTCAAA
26289573 AAAAACTTCAAA
1 AAAAACTTCAAA
26289585 A
1 A
26289586 CAATTTAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAACTTCAAA
Found at i:26289888 original size:13 final size:13
Alignment explanation
Indices: 26289866--26289895 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26289856 ATTTTTAATA
*
26289866 AAAAATAAAAATG
1 AAAAAGAAAAATG
26289879 AAAAAGAAAAATG
1 AAAAAGAAAAATG
26289892 AAAA
1 AAAA
26289896 TTTGAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (13 bp):
AAAAAGAAAAATG
Found at i:26290002 original size:17 final size:17
Alignment explanation
Indices: 26289976--26290022 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
26289966 AATTTTTTGG
*
26289976 AAAAATTATAAAATTTA
1 AAAAAATATAAAATTTA
*
26289993 AAAAAATATAAAATTTT
1 AAAAAATATAAAATTTA
**
26290010 TCAAAATATAAAA
1 AAAAAATATAAAA
26290023 AATTTTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAAAATATAAAATTTA
Found at i:26290015 original size:19 final size:18
Alignment explanation
Indices: 26289956--26290034 Score: 70
Period size: 19 Copynumber: 4.3 Consensus size: 18
26289946 TGAACTTTAA
* *
26289956 AAAAAATCTAAATTTTTT
1 AAAAAATATAAAATTTTT
* *
26289974 GGAAAAATTATAAAA-TTTA
1 --AAAAAATATAAAATTTTT
26289993 AAAAAATATAAAATTTTT
1 AAAAAATATAAAATTTTT
* *
26290011 CAAAATATAAAAAATTTTT
1 -AAAAAATATAAAATTTTT
26290030 AAAAA
1 AAAAA
26290035 GTTTTTGAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
17 12 0.25
18 7 0.15
19 19 0.40
20 10 0.21
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (18 bp):
AAAAAATATAAAATTTTT
Found at i:26290129 original size:29 final size:28
Alignment explanation
Indices: 26290072--26290150 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 28
26290062 ACTAGAAAAC
* * *
26290072 AATAAAAAAGATTTAAAAATTTGTGAAA
1 AATAAAAAAAATTTAAAATTTTATGAAA
26290100 AATAAAAAATAATTTAAAATTTTAAT-AAA
1 AATAAAAAA-AATTTAAAATTTT-ATGAAA
*
26290129 AATCCAAAAAAATTTTAAAATT
1 AAT--AAAAAAAATTTAAAATT
26290151 AAAAAAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
28 9 0.21
29 17 0.40
30 11 0.26
31 6 0.14
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.32
Consensus pattern (28 bp):
AATAAAAAAAATTTAAAATTTTATGAAA
Found at i:26290189 original size:33 final size:32
Alignment explanation
Indices: 26290138--26290201 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
26290128 AAATCCAAAA
* *
26290138 AAATTTTAAAATTAAAAAAATATATAAAAATTG
1 AAATTATAAAATTAAAAAAATAT-GAAAAATTG
* *
26290171 AAATTATAAGATTCAAAAAATATGAAAAATT
1 AAATTATAAAATTAAAAAAATATGAAAAATT
26290202 TTCAAAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 7 0.26
33 20 0.74
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (32 bp):
AAATTATAAAATTAAAAAAATATGAAAAATTG
Found at i:26290375 original size:18 final size:19
Alignment explanation
Indices: 26290343--26290395 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
26290333 TAAAATCTTT
** *
26290343 ATTTTTTAATTTTTTTTA-
1 ATTTTTTAAAATTTTTGAG
26290361 ATTTTTTAAAA-TTTTGAG
1 ATTTTTTAAAATTTTTGAG
26290379 ATTTTTTGAAAATTTTT
1 ATTTTTT-AAAATTTTT
26290396 AAGTTTCCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 5 0.17
18 16 0.55
19 4 0.14
20 4 0.14
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (19 bp):
ATTTTTTAAAATTTTTGAG
Found at i:26290507 original size:19 final size:19
Alignment explanation
Indices: 26290463--26290510 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
26290453 ATTGTTTAAA
26290463 ATTTTTAGAAAATATTTTAG
1 ATTTTTA-AAAATATTTTAG
* *
26290483 AATTTTAAAAA-ATTGTTTG
1 ATTTTTAAAAATATT-TTAG
26290502 ATTTTTAAA
1 ATTTTTAAA
26290511 TTGTTTTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 3 0.12
19 15 0.62
20 6 0.25
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (19 bp):
ATTTTTAAAAATATTTTAG
Found at i:26290563 original size:9 final size:9
Alignment explanation
Indices: 26290534--26290596 Score: 54
Period size: 9 Copynumber: 6.4 Consensus size: 9
26290524 TCTTTAAAGC
*
26290534 TTTTAAAAT
1 TTTTAGAAT
26290543 TATTTAAGAAT
1 T-TTT-AGAAT
26290554 TTTTAGAAT
1 TTTTAGAAT
**
26290563 TTTTTTAAGT
1 TTTTAGAA-T
26290573 TTTTAGAATTT
1 TTTTAGAA--T
26290584 TTTTAGAAT
1 TTTTAGAAT
26290593 TTTT
1 TTTT
26290597 TAATTTGAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
9 17 0.39
10 13 0.30
11 14 0.32
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (9 bp):
TTTTAGAAT
Found at i:26290567 original size:11 final size:11
Alignment explanation
Indices: 26290553--26290622 Score: 74
Period size: 11 Copynumber: 6.4 Consensus size: 11
26290543 TATTTAAGAA
26290553 TTTTTAGAATT
1 TTTTTAGAATT
*
26290564 TTTTT--AA-G
1 TTTTTAGAATT
26290572 TTTTTAGAATT
1 TTTTTAGAATT
26290583 TTTTTAGAATTT
1 TTTTTAGAA-TT
*
26290595 TTTAATTTGAATT
1 TTT--TTAGAATT
26290608 TTTTTAGAATT
1 TTTTTAGAATT
26290619 TTTT
1 TTTT
26290623 ATAATCTGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
8 5 0.10
9 2 0.04
10 2 0.04
11 25 0.51
12 5 0.10
13 5 0.10
14 5 0.10
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (11 bp):
TTTTTAGAATT
Found at i:26290575 original size:19 final size:19
Alignment explanation
Indices: 26290503--26290588 Score: 75
Period size: 19 Copynumber: 4.3 Consensus size: 19
26290493 AATTGTTTGA
* *
26290503 TTTTTAAATTGTTTTGAATT
1 TTTTTAAGTT-TTTAGAATT
* *
26290523 TTCTTTAAAGCTTTTA-AAAT
1 TT-TTT-AAGTTTTTAGAATT
*
26290543 TATTTAAGAATTTTTAGAATT
1 TTTTTAAG--TTTTTAGAATT
26290564 TTTTTAAGTTTTTAGAATT
1 TTTTTAAGTTTTTAGAATT
26290583 TTTTTA
1 TTTTTA
26290589 GAATTTTTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
18 3 0.06
19 20 0.38
20 11 0.21
21 16 0.30
22 3 0.06
ACGTcount: A:0.30, C:0.02, G:0.08, T:0.59
Consensus pattern (19 bp):
TTTTTAAGTTTTTAGAATT
Found at i:26290595 original size:19 final size:19
Alignment explanation
Indices: 26290534--26290595 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
26290524 TCTTTAAAGC
* * *
26290534 TTTTAAAATTATTTAAGAA
1 TTTTAGAATTTTTTTAGAA
*
26290553 TTTTTAGAATTTTTTTA-AGT
1 -TTTTAGAATTTTTTTAGA-A
26290573 TTTTAGAATTTTTTTAGAA
1 TTTTAGAATTTTTTTAGAA
26290592 TTTT
1 TTTT
26290596 TTAATTTGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
19 21 0.60
20 14 0.40
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (19 bp):
TTTTAGAATTTTTTTAGAA
Found at i:26290597 original size:10 final size:10
Alignment explanation
Indices: 26290534--26290623 Score: 67
Period size: 10 Copynumber: 8.5 Consensus size: 10
26290524 TCTTTAAAGC
*
26290534 TTTTAAAATT
1 TTTTAGAATT
*
26290544 ATTTAAGAA-T
1 -TTTTAGAATT
26290554 TTTTAGAATT
1 TTTTAGAATT
* *
26290564 TTTT-TAAGT
1 TTTTAGAATT
26290573 TTTTAGAATTT
1 TTTTAGAA-TT
26290584 TTTTAGAATT
1 TTTTAGAATT
26290594 TTTTAATTTGAATTT
1 TTTT-A---GAA-TT
26290609 TTTTAGAATT
1 TTTTAGAATT
26290619 TTTTA
1 TTTTA
26290624 TAATCTGAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 17
0.73 0.08 0.19
Matches are distributed among these distances:
9 14 0.22
10 21 0.33
11 19 0.30
14 4 0.06
15 6 0.09
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (10 bp):
TTTTAGAATT
Found at i:26290601 original size:19 final size:20
Alignment explanation
Indices: 26290503--26290621 Score: 91
Period size: 21 Copynumber: 5.7 Consensus size: 20
26290493 AATTGTTTGA
*
26290503 TTTTTA-AATTGTTTTGAATT
1 TTTTTAGAATT-TTTAGAATT
* *
26290523 TTCTTTA-AAGCTTTTAAAATT
1 TT-TTTAGAA-TTTTTAGAATT
* *
26290544 ATTTAAGAATTTTTAGAATT
1 TTTTTAGAATTTTTAGAATT
*
26290564 TTTTTA-AGTTTTTAGAATT
1 TTTTTAGAATTTTTAGAATT
26290583 TTTTTAGAATTTTTTAATTTGAATT
1 TTTTTAGAA-TTTTT-A---GAATT
26290608 TTTTTAGAATTTTT
1 TTTTTAGAATTTTT
26290622 TATAATCTGA
Statistics
Matches: 79, Mismatches: 11, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
19 18 0.23
20 19 0.24
21 21 0.27
22 2 0.03
24 5 0.06
25 14 0.18
ACGTcount: A:0.29, C:0.02, G:0.08, T:0.61
Consensus pattern (20 bp):
TTTTTAGAATTTTTAGAATT
Found at i:26290890 original size:29 final size:28
Alignment explanation
Indices: 26290833--26290887 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
26290823 AGGCTAATGG
26290833 TTTTATTTTTTTAGGTACCAAACTGACAA
1 TTTTATTTTTTTA-GTACCAAACTGACAA
* *
26290862 TTTTGTTTTTTT-GTACCAAATTGACA
1 TTTTATTTTTTTAGTACCAAACTGACA
26290888 CAAAATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 13 0.54
29 11 0.46
ACGTcount: A:0.27, C:0.13, G:0.11, T:0.49
Consensus pattern (28 bp):
TTTTATTTTTTTAGTACCAAACTGACAA
Found at i:26292932 original size:25 final size:24
Alignment explanation
Indices: 26292883--26292937 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
26292873 ACATTTACTA
*
26292883 TTATAGCACCAAGTTACAAGCAAG
1 TTATAGCACCAAGCTACAAGCAAG
* * *
26292907 TTTATAGCACTAAGCTATAAGTAAG
1 -TTATAGCACCAAGCTACAAGCAAG
26292932 TTATAG
1 TTATAG
26292938 TATTTTTAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (24 bp):
TTATAGCACCAAGCTACAAGCAAG
Found at i:26296381 original size:15 final size:14
Alignment explanation
Indices: 26296361--26296390 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26296351 GTATTTTAAT
26296361 AATAAATAAAATAAA
1 AATAAAT-AAATAAA
26296376 AATAAATAAATAAA
1 AATAAATAAATAAA
26296390 A
1 A
26296391 GCCAACATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AATAAATAAATAAA
Found at i:26297323 original size:12 final size:12
Alignment explanation
Indices: 26297306--26297333 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
26297296 AATAGTAATA
26297306 AAATATAAATTT
1 AAATATAAATTT
26297318 AAATATAAATTT
1 AAATATAAATTT
26297330 AAAT
1 AAAT
26297334 TTTAACTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AAATATAAATTT
Found at i:26297327 original size:18 final size:17
Alignment explanation
Indices: 26297302--26297335 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26297292 CATAAATAGT
26297302 AATAAAATATAAATTTA
1 AATAAAATATAAATTTA
*
26297319 AATATAAATTTAAATTT
1 AATA-AAATATAAATTT
26297336 TAACTATTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AATAAAATATAAATTTA
Found at i:26298848 original size:22 final size:23
Alignment explanation
Indices: 26298814--26298856 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
26298804 AACTTTAGCA
26298814 TTCTTCTTTCTTGA-ATTCTATC
1 TTCTTCTTTCTTGAGATTCTATC
26298836 TTCTT-TTTACTTGAGATTCTA
1 TTCTTCTTT-CTTGAGATTCTA
26298857 ATTGATGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 3 0.16
22 10 0.53
23 6 0.32
ACGTcount: A:0.16, C:0.19, G:0.07, T:0.58
Consensus pattern (23 bp):
TTCTTCTTTCTTGAGATTCTATC
Found at i:26302570 original size:25 final size:25
Alignment explanation
Indices: 26302529--26302579 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
26302519 AACATATTTT
*
26302529 ATGCATGGGATACAATGTATGTACA
1 ATGCATGGGATACAATGCATGTACA
* *
26302554 ATGCATGGGTTATAATGCATGTACA
1 ATGCATGGGATACAATGCATGTACA
26302579 A
1 A
26302580 ATCCAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (25 bp):
ATGCATGGGATACAATGCATGTACA
Found at i:26307266 original size:21 final size:21
Alignment explanation
Indices: 26307236--26307276 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
26307226 CTTAGTTGTA
26307236 AATAAAAATAAAATTAAAAAT
1 AATAAAAATAAAATTAAAAAT
*
26307257 AATAACAATAAAATTAAAAA
1 AATAAAAATAAAATTAAAAA
26307277 CAATTAATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (21 bp):
AATAAAAATAAAATTAAAAAT
Found at i:26310731 original size:16 final size:16
Alignment explanation
Indices: 26310710--26310765 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
26310700 ATTTTTTAAT
26310710 TAATTATTTAATTTTA
1 TAATTATTTAATTTTA
*
26310726 TAATTATTT--TTATA
1 TAATTATTTAATTTTA
26310740 T-A-TATTTAATTTTA
1 TAATTATTTAATTTTA
*
26310754 TATTTATATTAA
1 TAATTAT-TTAA
26310766 AAATAATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
12 5 0.16
13 1 0.03
14 10 0.31
16 12 0.38
17 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TAATTATTTAATTTTA
Found at i:26314594 original size:42 final size:42
Alignment explanation
Indices: 26314535--26314616 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
26314525 GTACTAGGCC
26314535 AGATATAGCTTTTGCTATTTGCAAGTTATCAAGATATACATA
1 AGATATAGCTTTTGCTATTTGCAAGTTATCAAGATATACATA
26314577 AGATATAGCTTTTGCTATTTGCAAGTTATCAAGATATACA
1 AGATATAGCTTTTGCTATTTGCAAGTTATCAAGATATACA
26314617 AGCCTAGTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (42 bp):
AGATATAGCTTTTGCTATTTGCAAGTTATCAAGATATACATA
Found at i:26315653 original size:26 final size:27
Alignment explanation
Indices: 26315594--26315653 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
26315584 ATAAAAATTA
*
26315594 TTTTTGTTTATTTGAAAATATAATTTT
1 TTTTTTTTTATTTGAAAATATAATTTT
*
26315621 TTATTTTTTTA-TT-AAAATATTATTTT
1 TT-TTTTTTTATTTGAAAATATAATTTT
*
26315647 CTTTTTT
1 TTTTTTT
26315654 AGAATTATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 5 0.17
26 13 0.45
27 4 0.14
28 7 0.24
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (27 bp):
TTTTTTTTTATTTGAAAATATAATTTT
Found at i:26316227 original size:5 final size:5
Alignment explanation
Indices: 26316217--26316275 Score: 57
Period size: 5 Copynumber: 11.4 Consensus size: 5
26316207 AATAATATTT
* * *
26316217 AACAA AACAA ACAAAA AACAAA AACAA AACAA AAC-A AACAA AAAAA AATAA
1 AACAA AACAA A-ACAA AAC-AA AACAA AACAA AACAA AACAA AACAA AACAA
26316268 AACGAA AA
1 AAC-AA AA
26316276 TAAGACAGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
4 4 0.09
5 28 0.62
6 13 0.29
ACGTcount: A:0.81, C:0.15, G:0.02, T:0.02
Consensus pattern (5 bp):
AACAA
Found at i:26316366 original size:21 final size:21
Alignment explanation
Indices: 26316337--26316378 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26316327 CCTGTCAGCC
*
26316337 ACCCGACCAA-CTCCCCGACCA
1 ACCCAACCAATCT-CCCGACCA
26316358 ACCCAACCAATCTCCCGACCA
1 ACCCAACCAATCTCCCGACCA
26316379 GCCATCTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.31, C:0.55, G:0.07, T:0.07
Consensus pattern (21 bp):
ACCCAACCAATCTCCCGACCA
Found at i:26317774 original size:16 final size:16
Alignment explanation
Indices: 26317742--26317852 Score: 75
Period size: 16 Copynumber: 6.8 Consensus size: 16
26317732 ATAGGTTTCT
*
26317742 AAAACCCCTAAAAATCC
1 AAAATCCCT-AAAATCC
*
26317759 AAAATCCCTTAAATCC
1 AAAATCCCTAAAATCC
* *
26317775 -AAACCCCATAAAATTC
1 AAAATCCC-TAAAATCC
*
26317791 AAAATCCCTAAAATCT
1 AAAATCCCTAAAATCC
* *
26317807 AAAACCCCCAAAAGTCC
1 AAAATCCCTAAAA-TCC
*
26317824 GAAAAT-CCTCGAAATCC
1 -AAAATCCCT-AAAATCC
*
26317841 AAAGT-CCTAAAA
1 AAAATCCCTAAAA
26317853 AATCCTAAAG
Statistics
Matches: 73, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
15 9 0.12
16 36 0.49
17 21 0.29
18 7 0.10
ACGTcount: A:0.49, C:0.31, G:0.04, T:0.17
Consensus pattern (16 bp):
AAAATCCCTAAAATCC
Found at i:26317781 original size:32 final size:32
Alignment explanation
Indices: 26317743--26317853 Score: 100
Period size: 32 Copynumber: 3.4 Consensus size: 32
26317733 TAGGTTTCTA
*
26317743 AAACCCCTAAAAATCCAAAATCCCTTAAATCC
1 AAACCCCTAAAAATCCAAAATCCCTAAAATCC
* *
26317775 AAACCCC-ATAAAATTCAAAATCCCTAAAATCTA
1 AAACCCCTA-AAAATCCAAAATCCCTAAAATC-C
* * *
26317808 AAACCCCCAAAAGTCCGAAAAT-CCTCGAAATCC
1 AAACCCCTAAAAATCC-AAAATCCCT-AAAATCC
**
26317841 AAAGTCCTAAAAA
1 AAACCCCTAAAAA
26317854 ATCCTAAAGA
Statistics
Matches: 63, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
31 1 0.02
32 27 0.43
33 24 0.38
34 11 0.17
ACGTcount: A:0.49, C:0.31, G:0.04, T:0.17
Consensus pattern (32 bp):
AAACCCCTAAAAATCCAAAATCCCTAAAATCC
Found at i:26318143 original size:15 final size:15
Alignment explanation
Indices: 26318123--26318161 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
26318113 TCTCATTTTA
26318123 CATGATATTCATTAG
1 CATGATATTCATTAG
* *
26318138 CATGATATACGTTAG
1 CATGATATTCATTAG
*
26318153 CATGTTATT
1 CATGATATT
26318162 ATCAGTATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (15 bp):
CATGATATTCATTAG
Found at i:26318909 original size:10 final size:10
Alignment explanation
Indices: 26318894--26318941 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
26318884 AACGGTTGGA
26318894 TTTATTTGAT
1 TTTATTTGAT
26318904 TTTATTTGAT
1 TTTATTTGAT
*
26318914 ATTTAATTTAAT
1 -TTT-ATTTGAT
*
26318926 TTT-TTTTAT
1 TTTATTTGAT
26318935 TTTATTT
1 TTTATTT
26318942 TTTTGAAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 8 0.24
10 13 0.39
11 6 0.18
12 6 0.18
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (10 bp):
TTTATTTGAT
Found at i:26325958 original size:40 final size:41
Alignment explanation
Indices: 26325914--26325990 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
26325904 GAAATCGTTC
26325914 TCAATCAA-AATTTAAAACCTCTGTTT-AAGAGGAACCAATT
1 TCAATCAAGAATTTAAAACCTCTGTTTAAAG-GGAACCAATT
* * *
26325954 TCAATCAAGATTTTAAAGCCTTTGTTTAAAGGGAACC
1 TCAATCAAGAATTTAAAACCTCTGTTTAAAGGGAACC
26325991 TTCTTCAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
40 8 0.25
41 21 0.66
42 3 0.09
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (41 bp):
TCAATCAAGAATTTAAAACCTCTGTTTAAAGGGAACCAATT
Found at i:26325981 original size:41 final size:40
Alignment explanation
Indices: 26325880--26325994 Score: 119
Period size: 40 Copynumber: 2.9 Consensus size: 40
26325870 CATGTTTTTA
* * * *
26325880 AAATTTTAAAGTCTTTGTTTAAGAGAAATCGTTCTCAATC
1 AAATTTTAAAGCCTTTGTTTAAGAGGAACCATTCTCAATC
* * *
26325920 AAAATTTAAAACCTCTGTTTAAGAGGAACCAATT-TCAATC
1 AAATTTTAAAGCCTTTGTTTAAGAGGAACC-ATTCTCAATC
26325960 AAGATTTTAAAGCCTTTGTTTAA-AGGGAACC-TTCT
1 AA-ATTTTAAAGCCTTTGTTTAAGA-GGAACCATTCT
26325995 TCAAAAAATA
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
39 2 0.03
40 34 0.56
41 25 0.41
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.36
Consensus pattern (40 bp):
AAATTTTAAAGCCTTTGTTTAAGAGGAACCATTCTCAATC
Found at i:26326143 original size:21 final size:21
Alignment explanation
Indices: 26326119--26326280 Score: 148
Period size: 21 Copynumber: 7.5 Consensus size: 21
26326109 TTTGAGATTC
26326119 TGTAAGACCTCCGGGCATGAT
1 TGTAAGACCTCCGGGCATGAT
* *
26326140 TGTAAGATCTCCGGGTATGATTT
1 TGTAAGACCTCCGGGCATGA--T
*
26326163 TGTAAGACCTTCGGGCATGAT
1 TGTAAGACCTCCGGGCATGAT
* *
26326184 GTCTAAGACCTCCGGGCAAT-TT
1 -TGTAAGACCTCCGGGC-ATGAT
*
26326206 TGTAAGACCTCCGGGTATGAT
1 TGTAAGACCTCCGGGCATGAT
* * *
26326227 GTCTAAGACCTCCGGGTAAT-TT
1 -TGTAAGACCTCCGGG-CATGAT
*
26326249 TGTAAGACCTCCGGGCATAACT
1 TGTAAGACCTCCGGGCATGA-T
*
26326271 TCTAAGACCT
1 TGTAAGACCT
26326281 TTCGGGTAGG
Statistics
Matches: 114, Mismatches: 18, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
20 4 0.04
21 48 0.42
22 40 0.35
23 22 0.19
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (21 bp):
TGTAAGACCTCCGGGCATGAT
Found at i:26326226 original size:43 final size:42
Alignment explanation
Indices: 26326119--26326311 Score: 226
Period size: 43 Copynumber: 4.4 Consensus size: 42
26326109 TTTGAGATTC
* *
26326119 TGTAAGACCTCCGGGCATGATTGTAAGATCTCCGGGTATGATTT
1 TGTAAGACCTCCGGGCATGATTCTAAGACCTCCGGGTA--ATTT
* *
26326163 TGTAAGACCTTCGGGCATGATGTCTAAGACCTCCGGGCAATTT
1 TGTAAGACCTCCGGGCATGAT-TCTAAGACCTCCGGGTAATTT
*
26326206 TGTAAGACCTCCGGGTATGATGTCTAAGACCTCCGGGTAATTT
1 TGTAAGACCTCCGGGCATGAT-TCTAAGACCTCCGGGTAATTT
* *
26326249 TGTAAGACCTCCGGGCATAACTTCTAAGACCTTTCGGGTAGGA-TT
1 TGTAAGACCTCCGGGCATGA-TTCTAAGACC-TCCGGGTA--ATTT
* *
26326294 TCTAAGACCTCTGGGCAT
1 TGTAAGACCTCCGGGCAT
26326312 AAATTTGATT
Statistics
Matches: 132, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
43 71 0.54
44 28 0.21
45 32 0.24
46 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCTCCGGGCATGATTCTAAGACCTCCGGGTAATTT
Found at i:26326428 original size:23 final size:23
Alignment explanation
Indices: 26326400--26326577 Score: 172
Period size: 22 Copynumber: 8.0 Consensus size: 23
26326390 GCATAATGTC
26326400 TAAGACCTTCGGGCATGATTCTG
1 TAAGACCTTCGGGCATGATTCTG
* *
26326423 TAAGACC-TCCGGCATGATT-TC
1 TAAGACCTTCGGGCATGATTCTG
* * *
26326444 TAAGATCTCCGGGCATGATT-TC
1 TAAGACCTTCGGGCATGATTCTG
* * *
26326466 TAAGACCTTC--GAATAATTTTG
1 TAAGACCTTCGGGCATGATTCTG
*
26326487 TAAGATCTTCGGGCATGATTCTG
1 TAAGACCTTCGGGCATGATTCTG
26326510 TAAGACCTTCGGGCATGATGTC--
1 TAAGACCTTCGGGCATGAT-TCTG
* *
26326532 TAAAACCTCCGGGCATGATTCTG
1 TAAGACCTTCGGGCATGATTCTG
* *
26326555 TATGATCTTCGGGCATGACTTCT
1 TAAGACCTTCGGGCATGA-TTCT
26326578 AAGACCACTG
Statistics
Matches: 126, Mismatches: 21, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
20 6 0.05
21 19 0.15
22 48 0.38
23 47 0.37
24 6 0.05
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (23 bp):
TAAGACCTTCGGGCATGATTCTG
Found at i:26326436 original size:22 final size:22
Alignment explanation
Indices: 26326373--26326556 Score: 130
Period size: 22 Copynumber: 8.4 Consensus size: 22
26326363 ATCTCAATCA
* *
26326373 ATTCTGTAAGACCTCCAGCATA
1 ATTCTGTAAGACCTCCGGCATG
*
26326395 ATGTC--TAAGACCTTCGGGCATG
1 AT-TCTGTAAGACC-TCCGGCATG
26326417 ATTCTGTAAGACCTCCGGCATG
1 ATTCTGTAAGACCTCCGGCATG
* *
26326439 ATT-TCTAAGATCTCCGGGCATG
1 ATTCTGTAAGACCTCC-GGCATG
* * * *
26326461 ATT-TCTAAGACCTTC-GAATA
1 ATTCTGTAAGACCTCCGGCATG
* * *
26326481 ATTTTGTAAGATCTTCGGGCATG
1 ATTCTGTAAGA-CCTCCGGCATG
*
26326504 ATTCTGTAAGACCTTCGGGCATG
1 ATTCTGTAAGACC-TCCGGCATG
*
26326527 ATGTC--TAAAACCTCCGGGCATG
1 AT-TCTGTAAGACCTCC-GGCATG
26326549 ATTCTGTA
1 ATTCTGTA
26326557 TGATCTTCGG
Statistics
Matches: 129, Mismatches: 20, Indels: 25
0.74 0.11 0.14
Matches are distributed among these distances:
20 6 0.05
21 29 0.22
22 57 0.44
23 35 0.27
24 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (22 bp):
ATTCTGTAAGACCTCCGGCATG
Found at i:26326446 original size:44 final size:44
Alignment explanation
Indices: 26326373--26326583 Score: 210
Period size: 44 Copynumber: 4.8 Consensus size: 44
26326363 ATCTCAATCA
* * * *
26326373 ATTCTGTAAGACCTCCAGCATAATGTCTAAGACCTTCGGGCATG
1 ATTCTGTAAGACCTCCGGCATGATTTCTAAGACCTCCGGGCATG
*
26326417 ATTCTGTAAGACCTCCGGCATGATTTCTAAGATCTCCGGGCATG
1 ATTCTGTAAGACCTCCGGCATGATTTCTAAGACCTCCGGGCATG
* * * * * * *
26326461 ATT-TCTAAGACCTTC-GAATAATTTTGTAAGATCTTCGGGCATG
1 ATTCTGTAAGACCTCCGGCATGA-TTTCTAAGACCTCCGGGCATG
* * *
26326504 ATTCTGTAAGACCTTCGGGCATGATGTCTAAAACCTCCGGGCATG
1 ATTCTGTAAGACC-TCCGGCATGATTTCTAAGACCTCCGGGCATG
* * * *
26326549 ATTCTGTATGATCTTCGGGCATGACTTCTAAGACC
1 ATTCTGTAAGA-CCTCCGGCATGATTTCTAAGACC
26326584 ACTGGCATAA
Statistics
Matches: 136, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
42 4 0.03
43 32 0.24
44 50 0.37
45 45 0.33
46 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (44 bp):
ATTCTGTAAGACCTCCGGCATGATTTCTAAGACCTCCGGGCATG
Done.