Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 162 of 190
Found at i:26326591 original size:66 final size:64
Alignment explanation
Indices: 26326390--26326583 Score: 205
Period size: 66 Copynumber: 3.0 Consensus size: 64
26326380 AAGACCTCCA
* * *
26326390 GCATAATGTCTAAGACCTTCGGGCATGATTCTGTAAGA-CCTCCGGCATGATTTCTAAGATCTCC
1 GCATGATGTCTAAGACCTTCGGGCATGATTCTGTAAGATCTTCGGGCATGA-TTCTAAGA-C-CC
26326454 GG
63 GG
* * * *
26326456 GCATGATTTCTAAGACCTTC--GAATAATTTTGTAAGATCTTCGGGCATGATTCTGTAAGACCTT
1 GCATGATGTCTAAGACCTTCGGGCATGATTCTGTAAGATCTTCGGGCATGATTC--TAAGACC--
26326519 CGG
62 CGG
* * *
26326522 GCATGATGTCTAAAACCTCCGGGCATGATTCTGTATGATCTTCGGGCATGACTTCTAAGACC
1 GCATGATGTCTAAGACCTTCGGGCATGATTCTGTAAGATCTTCGGGCATGA-TTCTAAGACC
26326584 ACTGGCATAA
Statistics
Matches: 106, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
64 17 0.16
65 11 0.10
66 43 0.41
67 7 0.07
68 25 0.24
69 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (64 bp):
GCATGATGTCTAAGACCTTCGGGCATGATTCTGTAAGATCTTCGGGCATGATTCTAAGACCCGG
Found at i:26326844 original size:48 final size:49
Alignment explanation
Indices: 26326768--26327449 Score: 873
Period size: 48 Copynumber: 14.1 Consensus size: 49
26326758 AAATTTGAAA
* *
26326768 AAGATGAAAATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC
1 AAGATGAGAA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * *
26326818 -AGATGAGATTTTTAAAGTTGTAGAGCCTCTGTTGAGATGAGCTTTTTC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * *
26326866 AAGAAGA-AATTTTAAAGTTGTTGAGCCT-TAGTTGAGATGAGCTTTTTC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCT-GCTGAGAGGAGCTTTTTC
* ** *
26326914 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTATTGAGAGGAGCTTTTTT
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
26326963 AAGAAGA-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * * *
26327011 AAGATGAGATTTTTAAAATTATTGAACCTCTGCTGAGAGGAGCTTTTCC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* ** *
26327060 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTATTGAGAGGAGTTTTTTC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * ** *
26327109 AAGAAGA-AATTTTAAAGTTGTTGAACCTCTATTGAGAGAAGCTTTTTC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * *
26327157 AAGA-AAAAATTTTAAAGTTGTTGAGCCTCTGCTGAAAAGAGCTTTTTC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * *
26327205 AAGATGAGAATTTTAAACTTGTAGAGCCTCTGTTGAAAGGAGCTTTTTC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
26327254 AAGAAGA-AATTTTAAAGTTGTTGAGCCTCCGCTGAGAGGAGCTTTTTC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
*
26327302 AAGATGAGAATTTTTAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
26327351 -AGAAGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
*
26327399 -AGATGAG-ATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAG-TTTTTCC
1 AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTT-C
26327446 AAGA
1 AAGA
26327450 GAATTTATTT
Statistics
Matches: 556, Mismatches: 66, Indels: 22
0.86 0.10 0.03
Matches are distributed among these distances:
46 5 0.01
47 34 0.06
48 297 0.53
49 219 0.39
50 1 0.00
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.35
Consensus pattern (49 bp):
AAGATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
Found at i:26326942 original size:97 final size:97
Alignment explanation
Indices: 26326779--26327449 Score: 924
Period size: 97 Copynumber: 6.9 Consensus size: 97
26326769 AGATGAAAAT
* * *
26326779 TTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC-AGATGAGATTTTTAAAGTTGTAGAG
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTTGAG
*
26326843 CCTCTGTTGAGATGAGCTTTTTCAAGAAGAAA
66 CCTCTGTTGAGAGGAGCTTTTTCAAGAAGAAA
* * *
26326875 TTTTAAAGTTGTTGAGCCT-TAGTTGAGATGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTAGA
1 TTTTAAAGTTGTTGAGCCTCT-GCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTTGA
* *
26326939 GCCTCTATTGAGAGGAGCTTTTTTAAGAAGAAA
65 GCCTCTGTTGAGAGGAGCTTTTTCAAGAAGAAA
* * * * *
26326972 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGATTTTTAAAATTATTGAA
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTTGAG
* * *
26327037 CCTCTGCTGAGAGGAGCTTTTCCAAGATGAGAA
66 CCTCTGTTGAGAGGAGCTTTTTCAAGAAGA-AA
* ** * * *
26327070 TTTTAAAGTTGTAGAGCCTCTATTGAGAGGAGTTTTTTCAAGAAGA-AATTTTAAAGTTGTTGAA
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTTGAG
* * *
26327134 CCTCTATTGAGAGAAGCTTTTTCAAGAAAAAA
66 CCTCTGTTGAGAGGAGCTTTTTCAAGAAGAAA
* * * *
26327166 TTTTAAAGTTGTTGAGCCTCTGCTGAAAAGAGCTTTTTCAAGATGAGAATTTTAAACTTGTAGAG
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTTGAG
*
26327231 CCTCTGTTGAAAGGAGCTTTTTCAAGAAGAAA
66 CCTCTGTTGAGAGGAGCTTTTTCAAGAAGAAA
* *
26327263 TTTTAAAGTTGTTGAGCCTCCGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAGTTGTTGAG
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTTGAG
* *
26327328 CCTCTGCTGAGAGGAGCTTTTTC-AGAAGAGAT
66 CCTCTGTTGAGAGGAGCTTTTTCAAGAAGA-AA
26327360 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC-AGATGAG-ATTTTAAAGTTGTTGAG
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTTGAG
**
26327423 CCTCTACTGAGAGGAG-TTTTTCCAAGA
66 CCTCTGTTGAGAGGAGCTTTTT-CAAGA
26327450 GAATTTATTT
Statistics
Matches: 506, Mismatches: 61, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
94 5 0.01
95 33 0.07
96 91 0.18
97 334 0.66
98 43 0.08
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (97 bp):
TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTTGAG
CCTCTGTTGAGAGGAGCTTTTTCAAGAAGAAA
Found at i:26327612 original size:15 final size:15
Alignment explanation
Indices: 26327592--26327626 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
26327582 AATATTTAAC
26327592 AAAACAAACAAAAAA
1 AAAACAAACAAAAAA
26327607 AAAACAAACAAAAAA
1 AAAACAAACAAAAAA
26327622 AAAAC
1 AAAAC
26327627 GAAAATAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAACAAACAAAAAA
Found at i:26327631 original size:11 final size:12
Alignment explanation
Indices: 26327589--26327631 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
26327579 AATAATATTT
26327589 AACAAAACAAACA
1 AACAAAA-AAACA
26327602 AA-AAAAAAACA
1 AACAAAAAAACA
26327613 AACAAAAAAA-A
1 AACAAAAAAACA
26327624 AACGAAAA
1 AAC-AAAA
26327632 TAAGACAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
11 11 0.39
12 15 0.54
13 2 0.07
ACGTcount: A:0.84, C:0.14, G:0.02, T:0.00
Consensus pattern (12 bp):
AACAAAAAAACA
Found at i:26327719 original size:21 final size:21
Alignment explanation
Indices: 26327693--26327734 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
26327683 CCTGTCAGCC
26327693 ACCCAACCAACTCCCC-GACCA
1 ACCCAACCAA-TCCCCTGACCA
26327714 ACCCAACCAATCCCCTGACCA
1 ACCCAACCAATCCCCTGACCA
26327735 GCCACCCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.33, C:0.55, G:0.05, T:0.07
Consensus pattern (21 bp):
ACCCAACCAATCCCCTGACCA
Found at i:26327756 original size:22 final size:22
Alignment explanation
Indices: 26327731--26327773 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
26327721 CAATCCCCTG
*
26327731 ACCAGCCACCCTATAGCCACCA
1 ACCAGCCACCCTACAGCCACCA
* *
26327753 ACCAGCTACTCTACAGCCACC
1 ACCAGCCACCCTACAGCCACC
26327774 TAGATCCCCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.49, G:0.09, T:0.12
Consensus pattern (22 bp):
ACCAGCCACCCTACAGCCACCA
Found at i:26328601 original size:21 final size:20
Alignment explanation
Indices: 26328572--26328610 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
26328562 CTGTCGAACC
*
26328572 GATCGAATCGCCTGAACCGTA
1 GATCCAATCGCC-GAACCGTA
*
26328593 GATCCAATCGTCGAACCG
1 GATCCAATCGCCGAACCG
26328611 GTCAGATCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.28, C:0.31, G:0.23, T:0.18
Consensus pattern (20 bp):
GATCCAATCGCCGAACCGTA
Found at i:26329136 original size:32 final size:33
Alignment explanation
Indices: 26329094--26329185 Score: 109
Period size: 32 Copynumber: 2.8 Consensus size: 33
26329084 ATCATAAGTT
*
26329094 TCTAAAACCCCTAAAAATCCAAAATCCCTT-AAA
1 TCTAAAACCCC-AAAAATTCAAAATCCCTTAAAA
*
26329127 TC-CAAACCCCATAAAATTCAAAAT-CCTTAAAA
1 TCTAAAACCCCA-AAAATTCAAAATCCCTTAAAA
*
26329159 TCTAAAACCCCCAAAAGTTCAAAATCC
1 TCTAAAA-CCCCAAAAATTCAAAATCC
26329186 TCGAAATCCA
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
31 5 0.10
32 23 0.46
33 16 0.32
34 6 0.12
ACGTcount: A:0.48, C:0.30, G:0.01, T:0.21
Consensus pattern (33 bp):
TCTAAAACCCCAAAAATTCAAAATCCCTTAAAA
Found at i:26329193 original size:33 final size:33
Alignment explanation
Indices: 26329094--26329193 Score: 98
Period size: 33 Copynumber: 3.1 Consensus size: 33
26329084 ATCATAAGTT
* * *
26329094 TCTAAAACCCCTAAAAATCCAAAATCC-CTTAAA
1 TCTAAAACCCCCAAAAATTCAAAATCCTC-AAAA
* *
26329127 TC-CAAA-CCCCATAAAATTCAAAATCCTTAAAA
1 TCTAAAACCCCCA-AAAATTCAAAATCCTCAAAA
* *
26329159 TCTAAAACCCCCAAAAGTTCAAAATCCTCGAAA
1 TCTAAAACCCCCAAAAATTCAAAATCCTCAAAA
26329192 TC
1 TC
26329194 CAAAGTCTTA
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
31 4 0.07
32 21 0.39
33 24 0.44
34 5 0.09
ACGTcount: A:0.47, C:0.30, G:0.02, T:0.21
Consensus pattern (33 bp):
TCTAAAACCCCCAAAAATTCAAAATCCTCAAAA
Found at i:26330912 original size:3 final size:3
Alignment explanation
Indices: 26330906--26330944 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
26330896 GATTTTTTTC
26330906 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26330945 TTATGAAAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26331465 original size:60 final size:60
Alignment explanation
Indices: 26331401--26331517 Score: 155
Period size: 60 Copynumber: 1.9 Consensus size: 60
26331391 TGATGTTGCA
* * * *
26331401 AGTCGAAAAGTGATCAAGA-TCGAGTCGAGGTCATAAATCAATGACTGGACTAATGTCGCG
1 AGTCGAAAAGTGACCAAAACT-GAGTCAAAGTCATAAATCAATGACTGGACTAATGTCGCG
* * *
26331461 AGTCGAAAGGTGACCAAAACTGAGTCAAAGTCGTAAATCAATGATTGGACTAATGTC
1 AGTCGAAAAGTGACCAAAACTGAGTCAAAGTCATAAATCAATGACTGGACTAATGTC
26331518 ACAAGTCTGA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
60 48 0.98
61 1 0.02
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (60 bp):
AGTCGAAAAGTGACCAAAACTGAGTCAAAGTCATAAATCAATGACTGGACTAATGTCGCG
Found at i:26331617 original size:60 final size:60
Alignment explanation
Indices: 26331553--26331678 Score: 139
Period size: 60 Copynumber: 2.1 Consensus size: 60
26331543 AGTCAAGATC
* * *
26331553 AAATGAATATGA-TGATACCGCAAGTCGAAAGGTGACCAAGATCGAGTTGAAGTT-GTAAAT
1 AAATGAATA-GACTGATACCACAAGTCAAAAGGTGACCAAGATCGAG-TCAAGTTCGTAAAT
* ** * *
26331613 AAATGACTAGACTGATGTCACAAGTTAAAAGGTGGCCAAGATCGAGTCAAGTTCGTAAAT
1 AAATGAATAGACTGATACCACAAGTCAAAAGGTGACCAAGATCGAGTCAAGTTCGTAAAT
*
26331673 CAATGA
1 AAATGA
26331679 CTGGACTAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
59 8 0.15
60 47 0.85
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (60 bp):
AAATGAATAGACTGATACCACAAGTCAAAAGGTGACCAAGATCGAGTCAAGTTCGTAAAT
Found at i:26331679 original size:60 final size:60
Alignment explanation
Indices: 26331580--26331697 Score: 175
Period size: 60 Copynumber: 2.0 Consensus size: 60
26331570 CCGCAAGTCG
* *
26331580 AAAGGTGACCAAGATCGAGTTGAAGTTGTAAATAAATGACTAGACTGATGTCACAAGTTA
1 AAAGGTGACCAAGATCGAGTTCAAGTTGTAAATAAATGACTAGACTAATGTCACAAGTTA
* * *
26331640 AAAGGTGGCCAAGATCGAG-TCAAGTTCGTAAATCAATGACTGGACTAATGTCACAAGT
1 AAAGGTGACCAAGATCGAGTTCAAGTT-GTAAATAAATGACTAGACTAATGTCACAAGT
26331698 CTGAGGCTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
59 6 0.12
60 46 0.88
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (60 bp):
AAAGGTGACCAAGATCGAGTTCAAGTTGTAAATAAATGACTAGACTAATGTCACAAGTTA
Found at i:26331738 original size:99 final size:99
Alignment explanation
Indices: 26331608--26331800 Score: 323
Period size: 99 Copynumber: 1.9 Consensus size: 99
26331598 GTTGAAGTTG
* * *
26331608 TAAATAAATGACTAGACTGATGTCACAAGTTAAAAGGTGGCCAAGATCGAGTCAAGTTCGTAAAT
1 TAAATAAATGACTAGACTGATGTCACAAGTTAAAAGGTGACCAAGATCGAGTCAAGATCATAAAT
26331673 CAATGACTGGACTAATGTCACAAGTCTGAGGCTA
66 CAATGACTGGACTAATGTCACAAGTCTGAGGCTA
* * *
26331707 TAAATAAATGACTAGACTGATGTCGCGAGTTAGAAGGTGACCAAGATCGAGTCAAGATCATAAAT
1 TAAATAAATGACTAGACTGATGTCACAAGTTAAAAGGTGACCAAGATCGAGTCAAGATCATAAAT
*
26331772 CAATGACTGGACTAATGTCACGAGTCTGA
66 CAATGACTGGACTAATGTCACAAGTCTGA
26331801 AAATGATCTT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 87 1.00
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (99 bp):
TAAATAAATGACTAGACTGATGTCACAAGTTAAAAGGTGACCAAGATCGAGTCAAGATCATAAAT
CAATGACTGGACTAATGTCACAAGTCTGAGGCTA
Found at i:26331921 original size:114 final size:114
Alignment explanation
Indices: 26331740--26331958 Score: 321
Period size: 114 Copynumber: 1.9 Consensus size: 114
26331730 CGCGAGTTAG
* *
26331740 AAGGTGACCAAGATCGAGTCAAGATCATAAATCAATGACTGGACTAATGTCACGAGTCTGAAAAT
1 AAGGTGACCAAGATCGAGTCAAGATCATAAATAAATAACTGGACTAATGTCACGAGTCTGAAAAT
* * *
26331805 GATCTTACCCGAGTTGAGATTAAATGACTAGGACGATGCCGTGAGTCGA
66 GATCTGACCCAAATTGAGATTAAATGACTAGGACGATGCCGTGAGTCGA
* * * * * * *
26331854 AAGGTGACTAAGATCGAGTTAAGGTCATAAATAAATAACTGGACTGATGTCGCGAGTTTGAAGAT
1 AAGGTGACCAAGATCGAGTCAAGATCATAAATAAATAACTGGACTAATGTCACGAGTCTGAAAAT
*
26331919 GATCTGACCCAAATTGAGATTAAATGATTAGGACGATGCC
66 GATCTGACCCAAATTGAGATTAAATGACTAGGACGATGCC
26331959 ACGAGTCAAA
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
114 92 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.24
Consensus pattern (114 bp):
AAGGTGACCAAGATCGAGTCAAGATCATAAATAAATAACTGGACTAATGTCACGAGTCTGAAAAT
GATCTGACCCAAATTGAGATTAAATGACTAGGACGATGCCGTGAGTCGA
Found at i:26332112 original size:52 final size:52
Alignment explanation
Indices: 26332056--26332173 Score: 148
Period size: 52 Copynumber: 2.3 Consensus size: 52
26332046 TTTAACAAAA
* *
26332056 TCACAAGGTTTCAAGATTT-GCAAAGATTTTCAAATTTACAAGAATGGAAGAT
1 TCACAAGATTTCAAG-TTTCACAAAGATTTTCAAATTTACAAGAATGGAAGAT
* * * ** *
26332108 TCACAAGATTTCAAGTTTCACAAAGGTTTTTAGATTTGTAAGAATGGAATAT
1 TCACAAGATTTCAAGTTTCACAAAGATTTTCAAATTTACAAGAATGGAAGAT
26332160 TCACAAGATTTCAA
1 TCACAAGATTTCAA
26332174 AATTCGCAGA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
51 3 0.05
52 54 0.95
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (52 bp):
TCACAAGATTTCAAGTTTCACAAAGATTTTCAAATTTACAAGAATGGAAGAT
Found at i:26332127 original size:17 final size:17
Alignment explanation
Indices: 26332056--26332130 Score: 55
Period size: 17 Copynumber: 4.4 Consensus size: 17
26332046 TTTAACAAAA
*
26332056 TCACAAGGTTTCAAGATT
1 TCACAAGATTTCAAG-TT
*
26332074 TGCA-AAGATTTTCAAATT
1 T-CACAAGA-TTTCAAGTT
* ** *
26332092 T-ACAAGAATGGAAGAT
1 TCACAAGATTTCAAGTT
26332108 TCACAAGATTTCAAGTT
1 TCACAAGATTTCAAGTT
26332125 TCACAA
1 TCACAA
26332131 AGGTTTTTAG
Statistics
Matches: 42, Mismatches: 11, Indels: 9
0.68 0.18 0.15
Matches are distributed among these distances:
16 6 0.14
17 21 0.50
18 7 0.17
19 8 0.19
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (17 bp):
TCACAAGATTTCAAGTT
Found at i:26332252 original size:86 final size:86
Alignment explanation
Indices: 26332162--26332355 Score: 203
Period size: 86 Copynumber: 2.3 Consensus size: 86
26332152 TGGAATATTC
* * * * * * * *
26332162 ACAAGATTTCAAAATTCGCAGAGGTTCTAGATTCGTAAAGA-TTCAATGTTCGTAAGGA-TTTTC
1 ACAAGATTTCAAAATTCACAAAAGTTCTACATTAGCAAAGATTTC-AGGTTCGCAAGGACTTTT-
* *
26332225 AAATTCGTAAGAAAGACAGACTA
64 AAATTCGCAAGAAAGAAAGACTA
** * *
26332248 ACAAGATTTCAAGTTTCACAAAAGTTCTACATTAGCAAAGATTTCAGGTTTGCAAGGACTTTTAG
1 ACAAGATTTCAAAATTCACAAAAGTTCTACATTAGCAAAGATTTCAGGTTCGCAAGGACTTTTAA
* *
26332313 ATTCGCACGAAAGAAAGACTC
66 ATTCGCAAGAAAGAAAGACTA
*
26332334 ACAAGATTTCAAAATTTACAAA
1 ACAAGATTTCAAAATTCACAAA
26332356 GGTACAACGT
Statistics
Matches: 87, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
86 80 0.92
87 7 0.08
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (86 bp):
ACAAGATTTCAAAATTCACAAAAGTTCTACATTAGCAAAGATTTCAGGTTCGCAAGGACTTTTAA
ATTCGCAAGAAAGAAAGACTA
Found at i:26332424 original size:121 final size:121
Alignment explanation
Indices: 26332293--26332564 Score: 321
Period size: 121 Copynumber: 2.2 Consensus size: 121
26332283 CAAAGATTTC
* * *
26332293 AGGTTTGCAAGGACTTTTAGATTCGCACGAAAGAAAGACTCACAAGATTTCAAAATTT-ACAAAG
1 AGGTTCGCAAGGACTTTTAGATTCGCAAGAAAGAAAGACTCACAAGATTT-AAAATTTCACAAAA
* * * *
26332357 GTACAACGTTCGCAAGGACTTTCAGATTCATAAGACTCCAAGTTTCGCAAGGGTGCA
65 GTACAAAGTTCACAAGGACTTTCAGATTCATAAGACTCCAAATTTCGCAAAGGTGCA
* * * * * *
26332414 AGGTTCGCAAGGATTTTTAGATTTGCAAGAAAGAAAGATTTACAAGATTTTAAGTTTCACAAAAG
1 AGGTTCGCAAGGACTTTTAGATTCGCAAGAAAGAAAGACTCACAAGATTTAAAATTTCACAAAAG
* * * * * * * *
26332479 TGCAAAGTTCATAAGGATTTTCAGATTCGTAAGATTTCAAATTTCGTAAAGGTGTA
66 TACAAAGTTCACAAGGACTTTCAGATTCATAAGACTCCAAATTTCGCAAAGGTGCA
* *
26332535 AGGTTCGCAAGAACTTTTAGATTCACAAGA
1 AGGTTCGCAAGGACTTTTAGATTCGCAAGA
26332565 TTCCAAGTTT
Statistics
Matches: 125, Mismatches: 25, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
120 5 0.04
121 120 0.96
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (121 bp):
AGGTTCGCAAGGACTTTTAGATTCGCAAGAAAGAAAGACTCACAAGATTTAAAATTTCACAAAAG
TACAAAGTTCACAAGGACTTTCAGATTCATAAGACTCCAAATTTCGCAAAGGTGCA
Found at i:26332616 original size:52 final size:52
Alignment explanation
Indices: 26332449--26332609 Score: 178
Period size: 52 Copynumber: 3.1 Consensus size: 52
26332439 CAAGAAAGAA
* * * * * * *
26332449 AGATTTACAAGATTTTAAGTTTCACAAAAGTGCAAAGTTCATAAGGATTTTC
1 AGATTCACAAGATTTCAAGTTTCGCAAAGGTGCAAGGTTCACAAGGATTTTT
** * * * * * *
26332501 AGATTCGTAAGATTTCAAATTTCGTAAAGGTGTAAGGTTCGCAAGAACTTTT
1 AGATTCACAAGATTTCAAGTTTCGCAAAGGTGCAAGGTTCACAAGGATTTTT
*
26332553 AGATTCACAAGATTCCAAGTTTCGCAAAGGTGCAAGGTTCACAAGGATTTTT
1 AGATTCACAAGATTTCAAGTTTCGCAAAGGTGCAAGGTTCACAAGGATTTTT
26332605 AGATT
1 AGATT
26332610 TGCAAGAAAA
Statistics
Matches: 85, Mismatches: 24, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
52 85 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (52 bp):
AGATTCACAAGATTTCAAGTTTCGCAAAGGTGCAAGGTTCACAAGGATTTTT
Found at i:26332626 original size:121 final size:116
Alignment explanation
Indices: 26332501--26332797 Score: 292
Period size: 121 Copynumber: 2.5 Consensus size: 116
26332491 AAGGATTTTC
* * * *
26332501 AGATTCGTAAGATTTCAAATTTCGTAAAGGTGTAAGGTTCGCAAGAACTTTT-AGATTCACAAGA
1 AGATTCGTAAGATTTCAAATTTCGCAAAAGTGCAAGGTTCACAAGAA-TTTTCAGATTCACAAGA
* * *
26332565 TTCCAAGTTTCGCAAAGGTGCAAGGTTC-ACAAGGATTTTTAGATTTGCAAGAAAAAA
65 TTCCAAATTTCGCAAAGGTGCAAGGTTCGAC-A-GATTTTCAGATTAGCAAG----AA
* * * * * * **
26332622 AGATTTGCAAGATTTCAAGTTTCGCAAAAGTGCAAGGTTCATAAGGATTTTCATATTCGTAAGAT
1 AGATTCGTAAGATTTCAAATTTCGCAAAAGTGCAAGGTTCACAAGAATTTTCAGATTCACAAGAT
* *
26332687 TTCAAATTTCGCAAAGGTGTAAGGTTCGTACAGATTTTCAGATTAGCAAGAA
66 TCCAAATTTCGCAAAGGTGCAAGGTTCG-ACAGATTTTCAGATTAGCAAGAA
* ** * * *
26332739 AGATTCGTAAGATTTCAAGTTTTACAAAAGGTGTAAGGTGCACAAGGATTTTCAGATTC
1 AGATTCGTAAGATTTCAAATTTCGCAAAA-GTGCAAGGTTCACAAGAATTTTCAGATTC
26332798 GTAAGAAAGA
Statistics
Matches: 147, Mismatches: 25, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
117 27 0.18
118 25 0.17
120 4 0.03
121 88 0.60
122 1 0.01
123 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (116 bp):
AGATTCGTAAGATTTCAAATTTCGCAAAAGTGCAAGGTTCACAAGAATTTTCAGATTCACAAGAT
TCCAAATTTCGCAAAGGTGCAAGGTTCGACAGATTTTCAGATTAGCAAGAA
Found at i:26332626 original size:173 final size:173
Alignment explanation
Indices: 26332336--26332714 Score: 589
Period size: 173 Copynumber: 2.2 Consensus size: 173
26332326 AAAGACTCAC
* ** * * *
26332336 AAGATTTCAAAATTT-ACAAAGGTACAACGTTCGCAAGGACTTTCAGATTCATAAGACTCCAAGT
1 AAGATTTC-AAATTTCGCAAAGGTGTAAGGTTCGCAAGAACTTTCAGATTCACAAGACTCCAAGT
* * * *
26332400 TTCGCAAGGGTGCAAGGTTCGCAAGGATTTTTAGATTTGCAAGAAAGAAAGATTTACAAGATTTT
65 TTCGCAAAGGTGCAAGGTTCACAAGGATTTTTAGATTTGCAAGAAAAAAAGATTTACAAGATTTC
26332465 AAGTTTCACAAAAGTGCAAAGTTCATAAGGATTTTCAGATTCGT
130 AAGTTTCACAAAAGTGCAAAGTTCATAAGGATTTTCAGATTCGT
* * *
26332509 AAGATTTCAAATTTCGTAAAGGTGTAAGGTTCGCAAGAACTTTTAGATTCACAAGATTCCAAGTT
1 AAGATTTCAAATTTCGCAAAGGTGTAAGGTTCGCAAGAACTTTCAGATTCACAAGACTCCAAGTT
*
26332574 TCGCAAAGGTGCAAGGTTCACAAGGATTTTTAGATTTGCAAGAAAAAAAGATTTGCAAGATTTCA
66 TCGCAAAGGTGCAAGGTTCACAAGGATTTTTAGATTTGCAAGAAAAAAAGATTTACAAGATTTCA
* * *
26332639 AGTTTCGCAAAAGTGCAAGGTTCATAAGGATTTTCATATTCGT
131 AGTTTCACAAAAGTGCAAAGTTCATAAGGATTTTCAGATTCGT
26332682 AAGATTTCAAATTTCGCAAAGGTGTAAGGTTCG
1 AAGATTTCAAATTTCGCAAAGGTGTAAGGTTCG
26332715 TACAGATTTT
Statistics
Matches: 187, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
172 6 0.03
173 181 0.97
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (173 bp):
AAGATTTCAAATTTCGCAAAGGTGTAAGGTTCGCAAGAACTTTCAGATTCACAAGACTCCAAGTT
TCGCAAAGGTGCAAGGTTCACAAGGATTTTTAGATTTGCAAGAAAAAAAGATTTACAAGATTTCA
AGTTTCACAAAAGTGCAAAGTTCATAAGGATTTTCAGATTCGT
Found at i:26332789 original size:66 final size:65
Alignment explanation
Indices: 26332676--26332839 Score: 172
Period size: 70 Copynumber: 2.4 Consensus size: 65
26332666 GGATTTTCAT
* *
26332676 ATTCGTAAGATTTCAAATTTCGCAAAGGTGTAAGGTTCGTACAGATTTTCAGATTAGCAAGAAAG
1 ATTCGTAAGATTTCAAATTTCACAAAGGTGTAAGGTTCGCACAGATTTTCAGATTAGCAAGAAAG
* * *
26332741 ATTCGTAAGATTTCAAGTTTTACAAAAGGTGTAAGG-T-GCACAAGGATTTTCAGATTCGTAAGA
1 ATTCGTAAGATTTCAAATTTCAC-AAAGGTGTAAGGTTCGCAC-A-GATTTTCAGA-T--T-AGC
*
26332804 AAGAAAA
59 AAGAAAG
*
26332811 ATTCGTAAGA-TTCTAAGTTTCACAAAGGT
1 ATTCGTAAGATTTC-AAATTTCACAAAGGT
26332840 TCTATATTCA
Statistics
Matches: 84, Mismatches: 7, Indels: 12
0.82 0.07 0.12
Matches are distributed among these distances:
64 3 0.04
65 22 0.26
66 22 0.26
67 1 0.01
69 10 0.12
70 26 0.31
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (65 bp):
ATTCGTAAGATTTCAAATTTCACAAAGGTGTAAGGTTCGCACAGATTTTCAGATTAGCAAGAAAG
Found at i:26333796 original size:29 final size:27
Alignment explanation
Indices: 26333754--26333835 Score: 76
Period size: 29 Copynumber: 2.9 Consensus size: 27
26333744 TTCTCTTTTA
26333754 TTTTTTTTAT-TTTTTATTTTTTTTCTTGC
1 TTTTTTTT-TCTTTTT-TTTTTTTTCTT-C
* *
26333783 TTTTTTTTTCTTTTTCCTTTTTTGCTTC
1 TTTTTTTTTCTTTTT-TTTTTTTTCTTC
*
26333811 TTTATTTTTTCATTTTTTTCTTTTT
1 TTT-TTTTTTC-TTTTTTTTTTTTT
26333836 GTACACCTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
28 5 0.11
29 34 0.77
30 5 0.11
ACGTcount: A:0.05, C:0.11, G:0.02, T:0.82
Consensus pattern (27 bp):
TTTTTTTTTCTTTTTTTTTTTTTCTTC
Found at i:26333819 original size:16 final size:16
Alignment explanation
Indices: 26333740--26333820 Score: 64
Period size: 16 Copynumber: 5.2 Consensus size: 16
26333730 TAAGTCTTCC
26333740 TTTTTTC-TCTTTTATT
1 TTTTTTCTTC-TTTATT
* *
26333756 TTTTTTATTTTTTATT
1 TTTTTTCTTCTTTATT
26333772 TTTTTTCTTGC--T-TT
1 TTTTTTCTT-CTTTATT
**
26333786 TTTTTTCTT-TTTCCT
1 TTTTTTCTTCTTTATT
*
26333801 TTTTTGCTTCTTTATT
1 TTTTTTCTTCTTTATT
26333817 TTTT
1 TTTT
26333821 CATTTTTTTC
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
14 12 0.24
15 10 0.20
16 28 0.55
17 1 0.02
ACGTcount: A:0.05, C:0.11, G:0.02, T:0.81
Consensus pattern (16 bp):
TTTTTTCTTCTTTATT
Found at i:26334176 original size:45 final size:44
Alignment explanation
Indices: 26334107--26334201 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
26334097 GTCCCATTAA
* *
26334107 TTTTTTTTTTTATAGAGCATATTGGCATTTTACCCCAACAATTT
1 TTTTTTTTTTTATAGAGCACATTGGCATCTTACCCCAACAATTT
* * *
26334151 TTTTTTTTTTTAGTGGAGCACATTGGCATCTTGCCCCATCAATTT
1 TTTTTTTTTTTA-TAGAGCACATTGGCATCTTACCCCAACAATTT
26334196 TTTTTT
1 TTTTTT
26334202 CAATAAAAGG
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 12 0.27
45 33 0.73
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.52
Consensus pattern (44 bp):
TTTTTTTTTTTATAGAGCACATTGGCATCTTACCCCAACAATTT
Found at i:26337626 original size:20 final size:21
Alignment explanation
Indices: 26337583--26337627 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
26337573 TTAAAAGATA
*
26337583 AAAATTATTTTTGTTTATTTG
1 AAAATTATATTTGTTTATTTG
26337604 AAAATATATATTT-TTTA-TTG
1 AAAAT-TATATTTGTTTATTTG
26337624 AAAA
1 AAAA
26337628 GATTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 7 0.32
21 9 0.41
22 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (21 bp):
AAAATTATATTTGTTTATTTG
Found at i:26337637 original size:20 final size:21
Alignment explanation
Indices: 26337590--26337637 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
26337580 ATAAAAATTA
* *
26337590 TTTTTGTTTATTTGAAAATAT
1 TTTTTTTTTATTTGAAAAGAT
* *
26337611 ATATTTTTTA-TTGAAAAGAT
1 TTTTTTTTTATTTGAAAAGAT
26337631 TTTTTTT
1 TTTTTTT
26337638 AAAGATTTTT
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.62
Consensus pattern (21 bp):
TTTTTTTTTATTTGAAAAGAT
Found at i:26337708 original size:18 final size:19
Alignment explanation
Indices: 26337670--26337712 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
26337660 TTTTGAAAAC
26337670 TTTATTTACAAAGATTTTT
1 TTTATTTACAAAGATTTTT
26337689 TTTATTTGA-AAAGATTTTT
1 TTTATTT-ACAAAGATTTTT
26337708 TTTAT
1 TTTAT
26337713 ACTCGTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 22 0.96
20 1 0.04
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.60
Consensus pattern (19 bp):
TTTATTTACAAAGATTTTT
Found at i:26339871 original size:134 final size:133
Alignment explanation
Indices: 26339631--26339890 Score: 468
Period size: 134 Copynumber: 2.0 Consensus size: 133
26339621 GTGTTATATC
26339631 TTCAATTTTAACACTAGAAGTTGAGGTTTAATCTGCAGATACCATCAACTTCGTTAGAATTCTAA
1 TTCAATTTTAACACTAGAAGTTGAGGTTTAATCTGCAGATACCATCAACTTCGTTAGAATTCTAA
*
26339696 GGCATATACAGTAATTGAAAGTTTAAATCAAAAGATATTTTTTGTATTCATAATATTTTATTTTT
66 GGCATATACAATAATTGAAAGTTTAAATCAAAAGATATTTTTTGTATTCATAATA-TTTATTTTT
26339761 TGTA
130 TGTA
* *
26339765 TTCAATTTTAACACTAGGAGTTGAGGTTTAATCTGTAGATACCATCAACTTCGTTAGAATTCTAA
1 TTCAATTTTAACACTAGAAGTTGAGGTTTAATCTGCAGATACCATCAACTTCGTTAGAATTCTAA
*
26339830 GGTATATACAATAATTGAAAG-TTAAATCAAAAGATATTTTTTGTATTCATAATATTTATTT
66 GGCATATACAATAATTGAAAGTTTAAATCAAAAGATATTTTTTGTATTCATAATATTTATTT
26339891 GTGTGAAAGG
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
132 7 0.06
133 33 0.27
134 82 0.67
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.41
Consensus pattern (133 bp):
TTCAATTTTAACACTAGAAGTTGAGGTTTAATCTGCAGATACCATCAACTTCGTTAGAATTCTAA
GGCATATACAATAATTGAAAGTTTAAATCAAAAGATATTTTTTGTATTCATAATATTTATTTTTT
GTA
Found at i:26347872 original size:30 final size:30
Alignment explanation
Indices: 26347838--26347908 Score: 72
Period size: 30 Copynumber: 2.4 Consensus size: 30
26347828 AAAATTTAAG
26347838 ATAAAATTTTTTGAATGTTCAAAATCTTAC
1 ATAAAATTTTTTGAATGTTCAAAATCTTAC
* ** * * **
26347868 ATAAAGTTACTTGAATTTTTAATGTCTTAC
1 ATAAAATTTTTTGAATGTTCAAAATCTTAC
26347898 AT-AAATTTTTT
1 ATAAAATTTTTT
26347909 AAAAAGATAA
Statistics
Matches: 31, Mismatches: 10, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
29 6 0.19
30 25 0.81
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.48
Consensus pattern (30 bp):
ATAAAATTTTTTGAATGTTCAAAATCTTAC
Found at i:26348082 original size:7 final size:7
Alignment explanation
Indices: 26348070--26348094 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26348060 AAAAAAATAA
26348070 ATTTCAT
1 ATTTCAT
26348077 ATTTCAT
1 ATTTCAT
26348084 ATTTCAT
1 ATTTCAT
26348091 ATTT
1 ATTT
26348095 TAGAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTTCAT
Found at i:26348681 original size:56 final size:55
Alignment explanation
Indices: 26348555--26348681 Score: 139
Period size: 56 Copynumber: 2.3 Consensus size: 55
26348545 TTAAAACCCG
* * *
26348555 TCAGTATAGATTTGTATGTTTTAATTTTTTCACCTAGACCGAAGGCTAGCGCCTA
1 TCAGTATAGATTTATATGTTTGAATTTTTTCACCTAGACCGAAGGCTAACGCCTA
* * * * * * *
26348610 TTAGTATAAAATTATATGTTTGAATTTTTTTGACCTATACCGACA-GTTAATGCCTA
1 TCAGTATAGATTTATATGTTTGAA-TTTTTTCACCTAGACCGA-AGGCTAACGCCTA
26348666 TCAGTATAGATTTATA
1 TCAGTATAGATTTATA
26348682 ATTTTTCTTA
Statistics
Matches: 57, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
55 19 0.33
56 37 0.65
57 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (55 bp):
TCAGTATAGATTTATATGTTTGAATTTTTTCACCTAGACCGAAGGCTAACGCCTA
Found at i:26348785 original size:55 final size:55
Alignment explanation
Indices: 26348726--26348854 Score: 168
Period size: 55 Copynumber: 2.3 Consensus size: 55
26348716 CAATATAAAC
* *
26348726 TTGTATTTTTTAATTTTTTTACCTATACCAACGGTTAGAGATTGTCAGTATATAA
1 TTGTATGTTTTAATTTTTTTACCTATACCAACGGTTAGAGATTGTCAGTATAGAA
* * * * ** *
26348781 TTGTATGCTTTAATTTTCTTACTTATACCGATTGTTAGAGATTGTCAGTATAGAC
1 TTGTATGTTTTAATTTTTTTACCTATACCAACGGTTAGAGATTGTCAGTATAGAA
*
26348836 TTATATGTTTTAATTTTTT
1 TTGTATGTTTTAATTTTTT
26348855 ATTATATTTT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 62 1.00
ACGTcount: A:0.26, C:0.10, G:0.13, T:0.50
Consensus pattern (55 bp):
TTGTATGTTTTAATTTTTTTACCTATACCAACGGTTAGAGATTGTCAGTATAGAA
Found at i:26349084 original size:22 final size:22
Alignment explanation
Indices: 26349061--26349101 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
26349051 AATAGCATTA
26349061 AAACTACTTA-AAACTACAAGT
1 AAACTACTTATAAACTACAAGT
* *
26349082 AAATTACTTATAATCTACAA
1 AAACTACTTATAAACTACAA
26349102 ACTTAGTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.51, C:0.17, G:0.02, T:0.29
Consensus pattern (22 bp):
AAACTACTTATAAACTACAAGT
Found at i:26349163 original size:15 final size:15
Alignment explanation
Indices: 26349143--26349180 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
26349133 TACCAACTCT
*
26349143 GATAAAAAAAACATC
1 GATAAAAAAAACATA
*
26349158 GATAAAACAAACATA
1 GATAAAAAAAACATA
26349173 GATAAAAA
1 GATAAAAA
26349181 GTTACACCCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.68, C:0.11, G:0.08, T:0.13
Consensus pattern (15 bp):
GATAAAAAAAACATA
Found at i:26356110 original size:33 final size:33
Alignment explanation
Indices: 26356048--26356110 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
26356038 ATAAAATTAT
* *
26356048 ATTTAATTTAAAAATTTAAATTAAAACAATAGC
1 ATTTAATTTAAAAATCTAAATAAAAACAATAGC
*
26356081 ATTTAATTTAAACA-CTAAATAAAATACAAT
1 ATTTAATTTAAAAATCTAAATAAAA-ACAAT
26356111 TATGTAAGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 8 0.31
33 18 0.69
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.35
Consensus pattern (33 bp):
ATTTAATTTAAAAATCTAAATAAAAACAATAGC
Found at i:26359962 original size:17 final size:17
Alignment explanation
Indices: 26359940--26359972 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
26359930 TTTGTTGACC
26359940 CAAATTTCATTAGTGAA
1 CAAATTTCATTAGTGAA
26359957 CAAATTTCATTAGTGA
1 CAAATTTCATTAGTGA
26359973 GTTAATGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAAATTTCATTAGTGAA
Found at i:26360832 original size:24 final size:25
Alignment explanation
Indices: 26360800--26360846 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
26360790 TAGATTGGGG
*
26360800 TATTGGTTTAATAT-TATTGGTATC
1 TATTGGTTTAATATGAATTGGTATC
* *
26360824 TATTTGTTTTATATGAATTGGTA
1 TATTGGTTTAATATGAATTGGTA
26360847 GCTTATATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.26, C:0.02, G:0.17, T:0.55
Consensus pattern (25 bp):
TATTGGTTTAATATGAATTGGTATC
Found at i:26362927 original size:43 final size:43
Alignment explanation
Indices: 26362792--26363142 Score: 304
Period size: 43 Copynumber: 8.3 Consensus size: 43
26362782 TGCTAAGGAA
* *
26362792 CATTATTTATTTTTCCAAAGTTGTTGAGCCTCTATTTAAAAGAG
1 CATTATTTATTTTT-TAAAGTTGTTGAGCCTCTATTTAGAAGAG
* * *
26362836 C--T-TTTATTTTTTAAATTTGTTGAGCCTCTGTTTAAAAGAG
1 CATTATTTATTTTTTAAAGTTGTTGAGCCTCTATTTAGAAGAG
* * * *
26362876 C----TTT-TTTTTTAAATTTGTTGAGCCTCTGTTTATAATAG
1 CATTATTTATTTTTTAAAGTTGTTGAGCCTCTATTTAGAAGAG
* * *
26362914 CATTATTTATTTTTTCAAAATTGTTAAGCCTCTATTTAGAGGAG
1 CATTATTTATTTTTT-AAAGTTGTTGAGCCTCTATTTAGAAGAG
* ** * *
26362958 CATTATTTATTTTTCAAAGTCATTGAGCCTCTAATTAGAGGAG
1 CATTATTTATTTTTTAAAGTTGTTGAGCCTCTATTTAGAAGAG
* * * * * * *
26363001 CTTTGTTTATTTTTTAAAGTCGTTGAGCTTATAATTAGAAAAG
1 CATTATTTATTTTTTAAAGTTGTTGAGCCTCTATTTAGAAGAG
* * * ** *
26363044 CTTTGTTTACTTTTTAAAGTCATTGAGCCTCTATTTAAAAGAG
1 CATTATTTATTTTTTAAAGTTGTTGAGCCTCTATTTAGAAGAG
* * * *
26363087 CTTTATTTATATTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAG
1 CATTATTTAT-TTTTTAAAGTTGTTGAGCCTCTATTTAGAAGAG
*
26363131 CTTTATTTATTT
1 CATTATTTATTT
26363143 CTGTTTAAAG
Statistics
Matches: 260, Mismatches: 40, Indels: 15
0.83 0.13 0.05
Matches are distributed among these distances:
38 33 0.13
39 3 0.01
40 27 0.10
41 9 0.03
42 4 0.02
43 110 0.42
44 74 0.28
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (43 bp):
CATTATTTATTTTTTAAAGTTGTTGAGCCTCTATTTAGAAGAG
Found at i:26363154 original size:25 final size:25
Alignment explanation
Indices: 26363117--26363167 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
26363107 TTGTTGAGCC
*
26363117 TCTGTTTAGAGGAGCTTTATTTATT
1 TCTGTTTAAAGGAGCTTTATTTATT
26363142 TCTGTTTAAAGGAGCTTTATTTATT
1 TCTGTTTAAAGGAGCTTTATTTATT
26363167 T
1 T
26363168 TTTCAAAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.08, G:0.18, T:0.53
Consensus pattern (25 bp):
TCTGTTTAAAGGAGCTTTATTTATT
Found at i:26363160 original size:69 final size:69
Alignment explanation
Indices: 26363077--26363211 Score: 225
Period size: 69 Copynumber: 2.0 Consensus size: 69
26363067 TGAGCCTCTA
* *
26363077 TTTAAAAGAGCTTTATTTATATTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTATTTATT
1 TTTAAAAGAGCTTTATTTATATTTTCAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTTTATTTATT
26363142 TCTG
66 TCTG
* * *
26363146 TTTAAAGGAGCTTTATTTATTTTTTCAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTTTGTTTATT
1 TTTAAAAGAGCTTTATTTATATTTTCAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTTTATTTATT
26363211 T
66 T
26363212 TTCAAAAGTT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.24, C:0.10, G:0.18, T:0.48
Consensus pattern (69 bp):
TTTAAAAGAGCTTTATTTATATTTTCAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTTTATTTATT
TCTG
Found at i:26363229 original size:43 final size:44
Alignment explanation
Indices: 26363142--26363231 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
26363132 TTTATTTATT
*
26363142 TCTGTTTAAAGGAGCTTTATTTATTTTTTCAAAGTCGTTGAGCC
1 TCTGTTTAAAGGAGCTTTATTTATTTTTTCAAAGTCGTTAAGCC
* *
26363186 TCTGTTTAAAGGAGCTTTGTTTA-TTTTTCAAAAGTTG-TAAGCC
1 TCTGTTTAAAGGAGCTTTATTTATTTTTTC-AAAGTCGTTAAGCC
26363229 TCT
1 TCT
26363232 ACTTATAAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 14 0.33
44 28 0.67
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (44 bp):
TCTGTTTAAAGGAGCTTTATTTATTTTTTCAAAGTCGTTAAGCC
Found at i:26364665 original size:2 final size:2
Alignment explanation
Indices: 26364658--26364692 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
26364648 GTTCTTAGAA
26364658 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
26364693 AAGTGAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:26369798 original size:50 final size:50
Alignment explanation
Indices: 26369694--26369803 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 50
26369684 GTCATGCATT
* ** * *
26369694 TGCATCATTTAAGAAATCTATAAACTGCATAATTATTTGGATCACACATT
1 TGCATCATTTAAGAAATCTATAAACTACATAATTATTTAAACCACACATG
* * * * *
26369744 TGCATCATTTAGGAAATTTATAAATTACATATTTATTTAAACCATACATG
1 TGCATCATTTAAGAAATCTATAAACTACATAATTATTTAAACCACACATG
26369794 TGCATCATTT
1 TGCATCATTT
26369804 GGTGAGAATT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (50 bp):
TGCATCATTTAAGAAATCTATAAACTACATAATTATTTAAACCACACATG
Found at i:26369846 original size:46 final size:45
Alignment explanation
Indices: 26369794--26369888 Score: 154
Period size: 46 Copynumber: 2.1 Consensus size: 45
26369784 ACCATACATG
*
26369794 TGCATCATTTGGTGAGAATTTAAATCATTGTTTTAAATATTGCATT
1 TGCATCATTTGGTGAGAATCTAAATCATTG-TTTAAATATTGCATT
* *
26369840 TGCATCATTTGGTGAGTATCTAAATCATTGTTTGAATATTGCATT
1 TGCATCATTTGGTGAGAATCTAAATCATTGTTTAAATATTGCATT
26369885 TGCA
1 TGCA
26369889 GCACAATTAC
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
45 18 0.39
46 28 0.61
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.44
Consensus pattern (45 bp):
TGCATCATTTGGTGAGAATCTAAATCATTGTTTAAATATTGCATT
Found at i:26370681 original size:42 final size:42
Alignment explanation
Indices: 26370588--26370681 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
26370578 CTAGTTAAAG
* *
26370588 GAACTTTTTAAAATTTTAAACTTTCAATGCTTTTGAATATAA
1 GAACTTTTTAAAATTTTAAACTTTCAATGCTTCTGAATAGAA
* * * * *
26370630 AAACCTTTTAAAATTTTAAAGTTTCAATGCTTCTG-TTGAGAT
1 GAACTTTTTAAAATTTTAAACTTTCAATGCTTCTGAAT-AGAA
26370672 GAACTTTTTA
1 GAACTTTTTA
26370682 TTTTGAATTT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
41 1 0.02
42 41 0.98
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.45
Consensus pattern (42 bp):
GAACTTTTTAAAATTTTAAACTTTCAATGCTTCTGAATAGAA
Found at i:26373078 original size:12 final size:12
Alignment explanation
Indices: 26373058--26373126 Score: 54
Period size: 12 Copynumber: 5.8 Consensus size: 12
26373048 ATCTTTAATA
26373058 TTTTT-TTTTGT
1 TTTTTATTTTGT
*
26373069 TTTTTATTTTGA
1 TTTTTATTTTGT
* *
26373081 TTTTTGTTTTGG
1 TTTTTATTTTGT
* *
26373093 TTTTGATTTTAT
1 TTTTTATTTTGT
26373105 TTTTT-TTTCTAG-
1 TTTTTATTT-T-GT
26373117 TTTTTATTTT
1 TTTTTATTTT
26373127 TTATTAATTG
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
11 8 0.18
12 34 0.76
13 3 0.07
ACGTcount: A:0.09, C:0.01, G:0.10, T:0.80
Consensus pattern (12 bp):
TTTTTATTTTGT
Found at i:26373085 original size:24 final size:22
Alignment explanation
Indices: 26373058--26373126 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 22
26373048 ATCTTTAATA
26373058 TTTTTTTTTGTTTTTTATTTTGAT
1 TTTTTTTTTG-TTTTTATTTT-AT
* *
26373082 TTTTGTTTTGGTTTTGATTTTAT
1 TTTT-TTTTTGTTTTTATTTTAT
26373105 TTTTTTTTCTAGTTTTTATTTT
1 TTTTTTTT-T-GTTTTTATTTT
26373127 TTATTAATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
22 4 0.11
23 6 0.16
24 23 0.61
25 5 0.13
ACGTcount: A:0.09, C:0.01, G:0.10, T:0.80
Consensus pattern (22 bp):
TTTTTTTTTGTTTTTATTTTAT
Found at i:26373090 original size:18 final size:19
Alignment explanation
Indices: 26373062--26373102 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
26373052 TTAATATTTT
*
26373062 TTTTTGTTTTTTATTTTGA
1 TTTTTGTTTTTGATTTTGA
*
26373081 TTTTTG-TTTTGGTTTTGA
1 TTTTTGTTTTTGATTTTGA
26373099 TTTT
1 TTTT
26373103 ATTTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.07, C:0.00, G:0.15, T:0.78
Consensus pattern (19 bp):
TTTTTGTTTTTGATTTTGA
Found at i:26373338 original size:51 final size:51
Alignment explanation
Indices: 26373281--26373407 Score: 166
Period size: 51 Copynumber: 2.4 Consensus size: 51
26373271 TAATTATAAT
*
26373281 TTATATATTTGGATGATATTTTGAATGGA-TCTAATTTATTTGTATGATTTA
1 TTATATATTTGCATGATATTTTGAATGGAGT-TAATTTATTTGTATGATTTA
* * * *
26373332 TTATATATTTGCATGTTATTTTGTATGGAGTTTATTTATTTGTATTATTTA
1 TTATATATTTGCATGATATTTTGAATGGAGTTAATTTATTTGTATGATTTA
26373383 TTATGATTTATTTGCATGATATTTT
1 TTAT-A--TATTTGCATGATATTTT
26373408 TGCATGATCT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
51 48 0.73
52 2 0.03
54 16 0.24
ACGTcount: A:0.26, C:0.02, G:0.14, T:0.57
Consensus pattern (51 bp):
TTATATATTTGCATGATATTTTGAATGGAGTTAATTTATTTGTATGATTTA
Found at i:26374791 original size:11 final size:11
Alignment explanation
Indices: 26374775--26374801 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
26374765 ATTATGTTGC
26374775 CCAAGCCTTGA
1 CCAAGCCTTGA
26374786 CCAAGCCTTGA
1 CCAAGCCTTGA
26374797 CCAAG
1 CCAAG
26374802 TTGATCGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.37, G:0.19, T:0.15
Consensus pattern (11 bp):
CCAAGCCTTGA
Found at i:26379721 original size:75 final size:75
Alignment explanation
Indices: 26379582--26379723 Score: 187
Period size: 75 Copynumber: 1.9 Consensus size: 75
26379572 CGATTTTTTT
* * * * *
26379582 ATTTTTTATTTTTTGATTTGAAATTCAATCCGAACATAATATGTACATATTATTTATTTGATTTA
1 ATTTTTTATTTTTTGATTTAAAATTCAATCCGAACATAATATATACATATTATATATATAATTTA
26379647 ATTTAGTTTG
66 ATTTAGTTTG
* ** *
26379657 ATTTTTTTTTTTTTGATTTAAAATTCAATCCGAGTATAATATATATATATT-TAATATATAATTT
1 ATTTTTTATTTTTTGATTTAAAATTCAATCCGAACATAATATATACATATTAT-ATATATAATTT
26379721 AAT
65 AAT
26379724 CCAAATTAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
74 1 0.02
75 56 0.98
ACGTcount: A:0.34, C:0.06, G:0.07, T:0.54
Consensus pattern (75 bp):
ATTTTTTATTTTTTGATTTAAAATTCAATCCGAACATAATATATACATATTATATATATAATTTA
ATTTAGTTTG
Found at i:26380493 original size:27 final size:27
Alignment explanation
Indices: 26380463--26380531 Score: 129
Period size: 27 Copynumber: 2.6 Consensus size: 27
26380453 AGTTATGATT
26380463 AAAAAAATAATTTTTGTTAAAAATATA
1 AAAAAAATAATTTTTGTTAAAAATATA
26380490 AAAAAAATAATTTTTGTTAAAAATATA
1 AAAAAAATAATTTTTGTTAAAAATATA
*
26380517 AAAAAAATATTTTTT
1 AAAAAAATAATTTTT
26380532 ATATTTCAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (27 bp):
AAAAAAATAATTTTTGTTAAAAATATA
Found at i:26380565 original size:23 final size:24
Alignment explanation
Indices: 26380539--26380584 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
26380529 TTTATATTTC
26380539 AAAAAAGATGATATTT-TTAAAAT
1 AAAAAAGATGATATTTGTTAAAAT
* *
26380562 AAAAAATATGATTTTTGTTAAAA
1 AAAAAAGATGATATTTGTTAAAA
26380585 ATATGAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (24 bp):
AAAAAAGATGATATTTGTTAAAAT
Found at i:26380967 original size:40 final size:41
Alignment explanation
Indices: 26380890--26380969 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
26380880 AAAAATGATG
*
26380890 TTTTCTAAATAAAAAAACGTAATTTTTGTTGATAATATGAC
1 TTTTCTAAATAAAAAAACGTAATTTTTGCTGATAATATGAC
*
26380931 TTTTCTAAGAT-AAAAAACGTATTTTTTGCTGA-AATATGA
1 TTTTCTAA-ATAAAAAAACGTAATTTTTGCTGATAATATGA
26380970 AAAAAATAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
40 7 0.19
41 27 0.75
42 2 0.06
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.41
Consensus pattern (41 bp):
TTTTCTAAATAAAAAAACGTAATTTTTGCTGATAATATGAC
Found at i:26381152 original size:16 final size:18
Alignment explanation
Indices: 26381118--26381155 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26381108 AAATAATATG
*
26381118 TTATTTATATATCACATA
1 TTATTCATATATCACATA
26381136 TTATTCATATAT-A-ATA
1 TTATTCATATATCACATA
26381152 TTAT
1 TTAT
26381156 AAATGTCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 11 0.58
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (18 bp):
TTATTCATATATCACATA
Found at i:26382051 original size:21 final size:20
Alignment explanation
Indices: 26382021--26382059 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
26382011 AATTTAAAAT
26382021 TTTAAAAAAATCATAAATAAA
1 TTTAAAAAAATCA-AAATAAA
*
26382042 TTTAATAAAATCAAAATA
1 TTTAAAAAAATCAAAATA
26382060 TTATATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (20 bp):
TTTAAAAAAATCAAAATAAA
Found at i:26382521 original size:17 final size:16
Alignment explanation
Indices: 26382469--26382521 Score: 63
Period size: 15 Copynumber: 3.3 Consensus size: 16
26382459 AAACTATATC
* *
26382469 AATAATTTAAATTATA
1 AATAATTTTAATAATA
*
26382485 AA-AATTTTAATAAAA
1 AATAATTTTAATAATA
26382500 AATAATTTTAACTAATA
1 AATAATTTTAA-TAATA
26382517 AATAA
1 AATAA
26382522 ATTATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
15 12 0.39
16 10 0.32
17 9 0.29
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
AATAATTTTAATAATA
Found at i:26386924 original size:22 final size:21
Alignment explanation
Indices: 26386872--26386928 Score: 89
Period size: 20 Copynumber: 2.7 Consensus size: 21
26386862 AATCAAAAGA
26386872 TATTTTTTGTATTCATAATAT
1 TATTTTTTGTATTCATAATAT
*
26386893 T-TGTTTTGTATTCATAATATT
1 TATTTTTTGTATTCATAATA-T
26386914 TATTTTTTGTATTCA
1 TATTTTTTGTATTCA
26386929 ATTTTAACAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
20 17 0.53
21 3 0.09
22 12 0.38
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.63
Consensus pattern (21 bp):
TATTTTTTGTATTCATAATAT
Found at i:26388478 original size:4 final size:4
Alignment explanation
Indices: 26388469--26388494 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
26388459 GTGTATAACC
26388469 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
26388495 CGATAAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:26393217 original size:2 final size:2
Alignment explanation
Indices: 26393210--26393246 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
26393200 ATGTAATACC
26393210 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26393247 GTTAGATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26393886 original size:13 final size:13
Alignment explanation
Indices: 26393868--26393892 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26393858 TTAAATAGAT
26393868 ATTTTTTAAATTA
1 ATTTTTTAAATTA
26393881 ATTTTTTAAATT
1 ATTTTTTAAATT
26393893 TTAAATGGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTTTTTAAATTA
Found at i:26394055 original size:30 final size:30
Alignment explanation
Indices: 26394021--26394091 Score: 72
Period size: 30 Copynumber: 2.4 Consensus size: 30
26394011 CAAATTTAAG
26394021 ATAAAATTTTTTGAATGTTCAAAATCTTAC
1 ATAAAATTTTTTGAATGTTCAAAATCTTAC
* ** * * **
26394051 ATAAAGTTACTTGAATTTTTAATGTCTTAC
1 ATAAAATTTTTTGAATGTTCAAAATCTTAC
26394081 AT-AAATTTTTT
1 ATAAAATTTTTT
26394092 AGAAAGATAA
Statistics
Matches: 31, Mismatches: 10, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
29 6 0.19
30 25 0.81
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.48
Consensus pattern (30 bp):
ATAAAATTTTTTGAATGTTCAAAATCTTAC
Found at i:26394264 original size:7 final size:7
Alignment explanation
Indices: 26394252--26394283 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
26394242 AAAAAAATAA
26394252 ATTTCAT
1 ATTTCAT
26394259 ATTTCAT
1 ATTTCAT
26394266 ATTTCAT
1 ATTTCAT
26394273 ATTTCAT
1 ATTTCAT
26394280 ATTT
1 ATTT
26394284 TAGAAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTCAT
Found at i:26394753 original size:48 final size:49
Alignment explanation
Indices: 26394671--26394766 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 49
26394661 TATGTTTTAG
* * *
26394671 TTTTTCTTGCCTATACTGACGGTTAATGCTCGTCAGTATAGACTTGTAA
1 TTTTTCTTACCTATACTGACGGTTAAAGCCCGTCAGTATAGACTTGTAA
* * *
26394720 TTTTT-TTACCTATATTGACGTTTAAAGCCCGTCAGTATAGATTTGTA
1 TTTTTCTTACCTATACTGACGGTTAAAGCCCGTCAGTATAGACTTGTA
26394767 TGTTTTAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
48 36 0.88
49 5 0.12
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.43
Consensus pattern (49 bp):
TTTTTCTTACCTATACTGACGGTTAAAGCCCGTCAGTATAGACTTGTAA
Found at i:26394939 original size:159 final size:158
Alignment explanation
Indices: 26394643--26394946 Score: 362
Period size: 159 Copynumber: 1.9 Consensus size: 158
26394633 ACGGTTAACA
* * * ** * * *
26394643 CCTATCAGTATAGACTTATATGTTTTAGTTTTTCTTGCCTATACTGACGGTTAATGCTCGTCAGT
1 CCTATCAGTATAAAATTATATGTTTTAATTTTTCTTGCCTATACCAACAGTTAATCCTCATCAGT
* ** * * * *
26394708 ATAGACTTGTAATTTTTTTACCTATATTGACGTTTAAAGCCCGTCAGTATAGATTTGTATGTTTT
66 ATAGACTTATAATTTTTTTACCTATACCGACGTTT-AAGCCCATCAATATAAACTTGTATGTTTT
26394773 AATTTTTTCACCTAGACCGAAGACTAGTG
130 AATTTTTTCACCTAGACCGAAGACTAGTG
*
26394802 CCTATTAGTATAAAATTATATGTTTTAATTTTT-TTGACCTATACCAACAGTTAATACCT-ATCA
1 CCTATCAGTATAAAATTATATGTTTTAATTTTTCTTG-CCTATACCAACAGTTAAT-CCTCATCA
* *
26394865 GTATAGATTTATAATTTTTCTTACCTATACCGACGTTT-AGCATCCATCAATATAAACTTGTATT
64 GTATAGACTTATAATTTTT-TTACCTATACCGACGTTTAAGC--CCATCAATATAAACTTGTATG
*
26394929 TTTTAATTTTTTTACCTA
126 TTTTAATTTTTTCACCTA
26394947 TACCAACGGT
Statistics
Matches: 121, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
158 6 0.05
159 64 0.53
160 51 0.42
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (158 bp):
CCTATCAGTATAAAATTATATGTTTTAATTTTTCTTGCCTATACCAACAGTTAATCCTCATCAGT
ATAGACTTATAATTTTTTTACCTATACCGACGTTTAAGCCCATCAATATAAACTTGTATGTTTTA
ATTTTTTCACCTAGACCGAAGACTAGTG
Found at i:26394981 original size:55 final size:55
Alignment explanation
Indices: 26394876--26395050 Score: 174
Period size: 55 Copynumber: 3.2 Consensus size: 55
26394866 TATAGATTTA
* * * * * *
26394876 TAATTTTTCTTACCTATACCGACGTTTAG-CATCCATCAATATA-AACTTGTATTTTT
1 TAATTTTT-TTACCTATACCAACGGTTAGAGAT-TATCAGTATAGAA-TTGTATGTTT
* * *
26394932 TAATTTTTTTACCTATACCAACGGTTAGAGATTGTCAGTATATAATTGTATGCTT
1 TAATTTTTTTACCTATACCAACGGTTAGAGATTATCAGTATAGAATTGTATGTTT
* * ** * *
26394987 TAATTTTCTTACTTATACCAATTGTTAGAGATTATCAGTATAGACTTATATGTTT
1 TAATTTTTTTACCTATACCAACGGTTAGAGATTATCAGTATAGAATTGTATGTTT
26395042 TAATTTTTT
1 TAATTTTTT
26395051 ATTATATTTT
Statistics
Matches: 99, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
55 87 0.88
56 12 0.12
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.47
Consensus pattern (55 bp):
TAATTTTTTTACCTATACCAACGGTTAGAGATTATCAGTATAGAATTGTATGTTT
Found at i:26395282 original size:22 final size:22
Alignment explanation
Indices: 26395259--26395299 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
26395249 AATAGCATTA
26395259 AAACTACTTA-AAACTACAAGT
1 AAACTACTTATAAACTACAAGT
* *
26395280 AAATTACTTATAATCTACAA
1 AAACTACTTATAAACTACAA
26395300 ACTTAGTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.51, C:0.17, G:0.02, T:0.29
Consensus pattern (22 bp):
AAACTACTTATAAACTACAAGT
Found at i:26395361 original size:14 final size:14
Alignment explanation
Indices: 26395342--26395375 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
26395332 ACCAACTCTG
*
26395342 ATAAAACAAACATC
1 ATAAAACAAACATA
26395356 ATAAAACAAACATA
1 ATAAAACAAACATA
26395370 ATAAAA
1 ATAAAA
26395376 AGTTACACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.71, C:0.15, G:0.00, T:0.15
Consensus pattern (14 bp):
ATAAAACAAACATA
Found at i:26403633 original size:107 final size:108
Alignment explanation
Indices: 26403377--26403637 Score: 303
Period size: 107 Copynumber: 2.4 Consensus size: 108
26403367 ATTTATGAGA
* * * *
26403377 AGATTATTGAAGGCGTTTTTGCCCAAAAAATACCTTGAATAATCTCTAACAAAATATTGAATAGG
1 AGATTATTGAAGGCGTTTTTGACC-AAAAATACCTTGAATAATCCCTAACAAAATATTGAAGAGA
* * * *
26403442 GTTATTGAAGGTATTTTTGGCCAAAAAAGCCTTGAATAATTCCT
65 GTTATTGAAAGCATTTCTAGCCAAAAAAGCCTTGAATAATTCCT
* * *
26403486 GGATTATTGAAGGCATTTTTGACCAAAAATGCCTTGAATAATCCCTAACAAAATATTGAACGA-A
1 AGATTATTGAAGGCGTTTTTGACCAAAAATACCTTGAATAATCCCTAACAAAATATTGAA-GAGA
* *
26403550 GTTATTGAAAGCGTTTCTAG-CAAAAATA-TCTTGAATAATTCCT
65 GTTATTGAAAGCATTTCTAGCCAAAAA-AGCCTTGAATAATTCCT
* * * * * *
26403593 AGATTATTAAAGGTGTCTTTGGCCAAAAACACCTTCAATAATCCC
1 AGATTATTGAAGGCGTTTTTGACCAAAAATACCTTGAATAATCCC
26403638 CTCCAATTTT
Statistics
Matches: 128, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
107 56 0.44
108 50 0.39
109 22 0.17
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (108 bp):
AGATTATTGAAGGCGTTTTTGACCAAAAATACCTTGAATAATCCCTAACAAAATATTGAAGAGAG
TTATTGAAAGCATTTCTAGCCAAAAAAGCCTTGAATAATTCCT
Found at i:26406323 original size:17 final size:17
Alignment explanation
Indices: 26406301--26406333 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
26406291 TTTGTTGACC
26406301 CAAATTTCATTAGTGAA
1 CAAATTTCATTAGTGAA
26406318 CAAATTTCATTAGTGA
1 CAAATTTCATTAGTGA
26406334 GTTAATGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAAATTTCATTAGTGAA
Found at i:26407190 original size:24 final size:25
Alignment explanation
Indices: 26407158--26407204 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
26407148 TAGATTGGGG
*
26407158 TATTGGTTTAATAT-TATTGGTATC
1 TATTGGTTTAATATGAATTGGTATC
* *
26407182 TATTTGTTTTATATGAATTGGTA
1 TATTGGTTTAATATGAATTGGTA
26407205 GCTTATATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.26, C:0.02, G:0.17, T:0.55
Consensus pattern (25 bp):
TATTGGTTTAATATGAATTGGTATC
Found at i:26409289 original size:43 final size:43
Alignment explanation
Indices: 26409176--26409487 Score: 211
Period size: 43 Copynumber: 7.3 Consensus size: 43
26409166 TGTTAAGGAA
*
26409176 CATTATTTATTTTTCCAAAGTTGTTGAGCCTCTGTTTAAAAGAG
1 CATTATTTATTTTT-CAAAATTGTTGAGCCTCTGTTTAAAAGAG
* * * * *
26409220 C--T-TTTATTTTTTAAATTTATTGAGCCTCTGTTTATAATAG
1 CATTATTTATTTTTCAAAATTGTTGAGCCTCTGTTTAAAAGAG
* * * *
26409260 CATTATTTATTTTTCAAAATTGTTAAGCCTCTATTTAGAGGAG
1 CATTATTTATTTTTCAAAATTGTTGAGCCTCTGTTTAAAAGAG
* ** ** * *
26409303 CATTATTTATTTTTCAAAGTCATTGAGCCTCTAATTAGAGGAG
1 CATTATTTATTTTTCAAAATTGTTGAGCCTCTGTTTAAAAGAG
* * * * * * ** *
26409346 CTTTGTTTATTTTTTAAAGTCGTTGAGCCTATAATT-AGAGAAG
1 CATTATTTATTTTTCAAAATTGTTGAGCCTCTGTTTAAAAG-AG
* * * ** * *
26409389 CTTTGTTTACTTTTT-AAAGTCATTGAGCCTCTATTTAAAGGAG
1 CATTATTTA-TTTTTCAAAATTGTTGAGCCTCTGTTTAAAAGAG
* * * *
26409432 CTTTATTTATATTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAG
1 CATTATTTAT-TTTTCAAAATTGTTGAGCCTCTGTTTAAAAGAG
*
26409476 CTTTATTTATTT
1 CATTATTTATTT
26409488 CTGTTTAAAG
Statistics
Matches: 224, Mismatches: 36, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
40 25 0.11
41 9 0.04
42 4 0.02
43 144 0.64
44 42 0.19
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (43 bp):
CATTATTTATTTTTCAAAATTGTTGAGCCTCTGTTTAAAAGAG
Found at i:26409329 original size:86 final size:84
Alignment explanation
Indices: 26409176--26409487 Score: 340
Period size: 86 Copynumber: 3.7 Consensus size: 84
26409166 TGTTAAGGAA
* * * * * *
26409176 CATTATTTATTTTTCCAAAGTTGTTGAGCCTCTGTTTAAAAGAGCTTT-TAT-TTTTTAAATTTA
1 CATTATTTATTTTT-CAAAGTTGTTGAGCCTCTATTTAGAGGAGCTTTATTTATTTTTAAAGTCA
* *
26409239 TTGAGCCTCTGTTTATAATAG
65 TTGAGCCTCTATTTA-AAGAG
* * *
26409260 CATTATTTATTTTTCAAAATTGTTAAGCCTCTATTTAGAGGAGCATTATTTATTTTTCAAAGTCA
1 CATTATTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCTTTATTTATTTTT-AAAGTCA
* *
26409325 TTGAGCCTCTAATTAGAGGAG
65 TTGAGCCTCTATTTA-AAGAG
* * * * * * * *
26409346 CTTTGTTTATTTTTTAAAGTCGTTGAGCCTATAATTAGAGAAGCTTTGTTTACTTTTTAAAGTCA
1 CATTATTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCTTTATTTA-TTTTTAAAGTCA
26409411 TTGAGCCTCTATTTAAAGGAG
65 TTGAGCCTCTATTTAAA-GAG
* *
26409432 CTTTATTTATATTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTATTTATTT
1 CATTATTTAT-TTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCTTTATTTATTT
26409488 CTGTTTAAAG
Statistics
Matches: 187, Mismatches: 35, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
83 27 0.14
84 16 0.09
85 6 0.03
86 98 0.52
87 40 0.21
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (84 bp):
CATTATTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCTTTATTTATTTTTAAAGTCAT
TGAGCCTCTATTTAAAGAG
Found at i:26409499 original size:25 final size:25
Alignment explanation
Indices: 26409462--26409512 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
26409452 TTGTTGAGCC
*
26409462 TCTGTTTAGAGGAGCTTTATTTATT
1 TCTGTTTAAAGGAGCTTTATTTATT
26409487 TCTGTTTAAAGGAGCTTTATTTATT
1 TCTGTTTAAAGGAGCTTTATTTATT
26409512 T
1 T
26409513 TTTCAAAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.08, G:0.18, T:0.53
Consensus pattern (25 bp):
TCTGTTTAAAGGAGCTTTATTTATT
Found at i:26409508 original size:69 final size:69
Alignment explanation
Indices: 26409422--26409556 Score: 234
Period size: 69 Copynumber: 2.0 Consensus size: 69
26409412 TGAGCCTCTA
* *
26409422 TTTAAAGGAGCTTTATTTATATTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTATTTATT
1 TTTAAAGGAGCTTTATTTATATTTTCAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTTTATTTATT
26409487 TCTG
66 TCTG
* *
26409491 TTTAAAGGAGCTTTATTTATTTTTTCAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTTTGTTTATT
1 TTTAAAGGAGCTTTATTTATATTTTCAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTTTATTTATT
26409556 T
66 T
26409557 TTCAAAAGTT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.23, C:0.10, G:0.19, T:0.48
Consensus pattern (69 bp):
TTTAAAGGAGCTTTATTTATATTTTCAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTTTATTTATT
TCTG
Found at i:26409574 original size:43 final size:44
Alignment explanation
Indices: 26409487--26409576 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
26409477 TTTATTTATT
*
26409487 TCTGTTTAAAGGAGCTTTATTTATTTTTTCAAAGTCGTTGAGCC
1 TCTGTTTAAAGGAGCTTTATTTATTTTTTCAAAGTCGTTAAGCC
* *
26409531 TCTGTTTAAAGGAGCTTTGTTTA-TTTTTCAAAAGTTG-TAAGCC
1 TCTGTTTAAAGGAGCTTTATTTATTTTTTC-AAAGTCGTTAAGCC
26409574 TCT
1 TCT
26409577 ACTTATAAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 14 0.33
44 28 0.67
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (44 bp):
TCTGTTTAAAGGAGCTTTATTTATTTTTTCAAAGTCGTTAAGCC
Found at i:26409636 original size:8 final size:8
Alignment explanation
Indices: 26409623--26409665 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
26409613 GTCCAACTTA
26409623 AAAAAAAT
1 AAAAAAAT
*
26409631 AAAAAAAGG
1 AAAAAAA-T
26409640 AAAAAAA-
1 AAAAAAAT
*
26409647 AAAAAAAC
1 AAAAAAAT
26409655 AAAAAAAT
1 AAAAAAAT
26409663 AAA
1 AAA
26409666 CATGTCGGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 7 0.23
8 17 0.55
9 7 0.23
ACGTcount: A:0.88, C:0.02, G:0.05, T:0.05
Consensus pattern (8 bp):
AAAAAAAT
Found at i:26409645 original size:16 final size:16
Alignment explanation
Indices: 26409623--26409665 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
26409613 GTCCAACTTA
*
26409623 AAAAAAATAAAAAAAGG
1 AAAAAAATAAAAAAA-C
26409640 AAAAAAA-AAAAAAAC
1 AAAAAAATAAAAAAAC
26409655 AAAAAAATAAA
1 AAAAAAATAAA
26409666 CATGTCGGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 7 0.29
16 10 0.42
17 7 0.29
ACGTcount: A:0.88, C:0.02, G:0.05, T:0.05
Consensus pattern (16 bp):
AAAAAAATAAAAAAAC
Found at i:26416139 original size:50 final size:50
Alignment explanation
Indices: 26416035--26416144 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 50
26416025 GTCATGCATT
* ** * *
26416035 TGCATCATTTAAGAAATCTATAAACTGCATAATTATTTGGATCACACATT
1 TGCATCATTTAAGAAATCTATAAACTACATAATTATTTAAACCACACATG
* * * * *
26416085 TGCATCATTTAGGAAATTTATAAATTACATATTTATTTAAACCATACATG
1 TGCATCATTTAAGAAATCTATAAACTACATAATTATTTAAACCACACATG
26416135 TGCATCATTT
1 TGCATCATTT
26416145 GGTGAGAATT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (50 bp):
TGCATCATTTAAGAAATCTATAAACTACATAATTATTTAAACCACACATG
Found at i:26419391 original size:12 final size:12
Alignment explanation
Indices: 26419370--26419440 Score: 56
Period size: 12 Copynumber: 5.9 Consensus size: 12
26419360 TATCTTTAAT
26419370 ATTTTT-TTTTG
1 ATTTTTATTTTG
*
26419381 TTTTTTATTTTG
1 ATTTTTATTTTG
**
26419393 ATTTTGGTTTTG
1 ATTTTTATTTTG
* *
26419405 GTTTTGATTTT-
1 ATTTTTATTTTG
*
26419416 ATTTTTATTTTCT
1 ATTTTTATTTT-G
26419429 AGTTTTTATTTT
1 A-TTTTTATTTT
26419441 TTATTAATTG
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
11 14 0.29
12 23 0.48
13 1 0.02
14 10 0.21
ACGTcount: A:0.11, C:0.01, G:0.11, T:0.76
Consensus pattern (12 bp):
ATTTTTATTTTG
Found at i:26419403 original size:18 final size:18
Alignment explanation
Indices: 26419376--26419426 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
26419366 TAATATTTTT
*
26419376 TTTTGTTTTTTATTTTGA
1 TTTTGATTTTTATTTTGA
* **
26419394 TTTTGGTTTTGGTTTTGA
1 TTTTGATTTTTATTTTGA
26419412 TTTT-ATTTTTATTTT
1 TTTTGATTTTTATTTT
26419427 CTAGTTTTTA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
17 8 0.30
18 19 0.70
ACGTcount: A:0.10, C:0.00, G:0.14, T:0.76
Consensus pattern (18 bp):
TTTTGATTTTTATTTTGA
Found at i:26419653 original size:51 final size:51
Alignment explanation
Indices: 26419598--26419724 Score: 166
Period size: 51 Copynumber: 2.4 Consensus size: 51
26419588 TAATTATAAT
*
26419598 TTATATATTTGGATGATATTTTGAATGGA-TCTAATTTATTTGTATGATTTA
1 TTATATATTTGCATGATATTTTGAATGGAGT-TAATTTATTTGTATGATTTA
* * * *
26419649 TTATATATTTGCATGTTATTTTGTATGGAGTTTATTTATTTGTATTATTTA
1 TTATATATTTGCATGATATTTTGAATGGAGTTAATTTATTTGTATGATTTA
26419700 TTATGATTTATTTGCATGATATTTT
1 TTAT-A--TATTTGCATGATATTTT
26419725 TGCATGATCT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
51 48 0.73
52 2 0.03
54 16 0.24
ACGTcount: A:0.26, C:0.02, G:0.14, T:0.57
Consensus pattern (51 bp):
TTATATATTTGCATGATATTTTGAATGGAGTTAATTTATTTGTATGATTTA
Found at i:26425697 original size:21 final size:22
Alignment explanation
Indices: 26425658--26425698 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26425648 TTTTAATTCA
26425658 AATTTAAATCAATATTTTATAT
1 AATTTAAATCAATATTTTATAT
*
26425680 AATTTAAATTAA-ATTTTAT
1 AATTTAAATCAATATTTTAT
26425699 TAGTTCGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
AATTTAAATCAATATTTTATAT
Found at i:26425965 original size:83 final size:84
Alignment explanation
Indices: 26425827--26426005 Score: 247
Period size: 83 Copynumber: 2.2 Consensus size: 84
26425817 AATTTACAAT
* * * *
26425827 ATATATAAATAATTATTTTA--TAATTTGATTTTGTTCGATTTTTTTATTTTTTATTTTTTGATT
1 ATATATACAT-ATTATTTTATTTGATTTAATTTAGTTCGATTTTTTTATTTTTTATTTTTTGATT
*
26425890 TGAAATTCAATCCGAACATA
65 TAAAATTCAATCCGAACATA
* *
26425910 ATATGTACATATTATTTTATTTGATTTAATTTAGTTTGATTTTTTTA-TTTTTATTTTTTGATTT
1 ATATATACATATTATTTTATTTGATTTAATTTAGTTCGATTTTTTTATTTTTTATTTTTTGATTT
*
26425974 AAAATTCAATCCGAATATA
66 AAAATTCAATCCGAACATA
*
26425993 ATATATATATATT
1 ATATATACATATT
26426006 TAATATATAA
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
82 9 0.11
83 53 0.63
84 22 0.26
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.56
Consensus pattern (84 bp):
ATATATACATATTATTTTATTTGATTTAATTTAGTTCGATTTTTTTATTTTTTATTTTTTGATTT
AAAATTCAATCCGAACATA
Found at i:26427073 original size:20 final size:20
Alignment explanation
Indices: 26427050--26427116 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
26427040 TAAAGATGAT
26427050 ATTTTTAAGTTAAAAACATA
1 ATTTTTAAGTTAAAAACATA
*
26427070 ATTTTT--GTTAAAAAGATTA
1 ATTTTTAAGTTAAAAACA-TA
* *
26427089 TATTTTTAAGATAAAAACACA
1 -ATTTTTAAGTTAAAAACATA
26427110 ATTTTTA
1 ATTTTTA
26427117 TTGAAAATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 9 0.23
19 2 0.05
20 19 0.49
21 1 0.03
22 8 0.21
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.43
Consensus pattern (20 bp):
ATTTTTAAGTTAAAAACATA
Found at i:26427085 original size:40 final size:41
Alignment explanation
Indices: 26427036--26427115 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 41
26427026 TTTTTAGAAT
* *
26427036 TTAATAAAGATGATATTTTTAAGTTAAAAACATAATTTTTG
1 TTAATAAAGATGATATTTTTAAGATAAAAACACAATTTTTG
*
26427077 TTAA-AAAGATTATATTTTTAAGATAAAAACACAATTTTT
1 TTAATAAAGATGATATTTTTAAGATAAAAACACAATTTTT
26427116 ATTGAAAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
40 32 0.89
41 4 0.11
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.42
Consensus pattern (41 bp):
TTAATAAAGATGATATTTTTAAGATAAAAACACAATTTTTG
Found at i:26427211 original size:112 final size:113
Alignment explanation
Indices: 26426975--26427217 Score: 294
Period size: 112 Copynumber: 2.2 Consensus size: 113
26426965 TTGAAAAATA
* ** * * *
26426975 ATATTTCTAAAATAAAATTACAATTTTTTATTAAAAAGATGAAAATTATATTTTTTAGAATTTAA
1 ATATTTCTAAGATAAAAACACAATTTTTTATTAAAAAGATGAAAAATATATTTTTTAAAATTCAA
* * * *
26427040 TAAAGATGATATTTTTAAGTTAAAAACATAATTTTTGTTAAAAAGATT
66 TAAAAATGATATTTTTAAATAAAAAACATAATTTTTGTTAAAAAGATG
* * *
26427088 ATATTTTTAAGATAAAAACACAA-TTTTTATTGAAAATATGAAAAATATATTTTTTAAAATTCAA
1 ATATTTCTAAGATAAAAACACAATTTTTTATTAAAAAGATGAAAAATATATTTTTTAAAATTCAA
* * * *
26427152 TAAAAATGAT-TTTTCTAAATAAAAAACGTAATTTTTGTTGATAATATG
66 TAAAAATGATATTTT-TAAATAAAAAACATAATTTTTGTTAAAAAGATG
26427200 ACT-TTTCTAAGATAAAAA
1 A-TATTTCTAAGATAAAAA
26427218 AACGTATTTT
Statistics
Matches: 110, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
111 4 0.04
112 86 0.78
113 20 0.18
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (113 bp):
ATATTTCTAAGATAAAAACACAATTTTTTATTAAAAAGATGAAAAATATATTTTTTAAAATTCAA
TAAAAATGATATTTTTAAATAAAAAACATAATTTTTGTTAAAAAGATG
Found at i:26427229 original size:42 final size:39
Alignment explanation
Indices: 26427157--26427241 Score: 116
Period size: 42 Copynumber: 2.1 Consensus size: 39
26427147 TTCAATAAAA
* *
26427157 ATGATTTTTCTAAATAAAAAACGTAATTTTTGTTGATAAT
1 ATGACTTTTCTAAATAAAAAACGTAATTTTTGCTGA-AAT
*
26427197 ATGACTTTTCTAAGATAAAAAAACGTATTTTTTGCTGAAAT
1 ATGACTTTTCTAA-AT-AAAAAACGTAATTTTTGCTGAAAT
26427238 ATGA
1 ATGA
26427242 AAAAAATAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
40 12 0.30
41 9 0.22
42 19 0.47
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (39 bp):
ATGACTTTTCTAAATAAAAAACGTAATTTTTGCTGAAAT
Found at i:26427328 original size:37 final size:37
Alignment explanation
Indices: 26427247--26427330 Score: 105
Period size: 37 Copynumber: 2.3 Consensus size: 37
26427237 TATGAAAAAA
* ** * * *
26427247 ATAAAATGTAAAATATTTTTATTTAATATTATTATAT
1 ATAAAATTTAAAATACATTTACTTAATATTATTACAC
*
26427284 ATAAAATTTAAAATACATTTACTTAGTATTATTACAC
1 ATAAAATTTAAAATACATTTACTTAATATTATTACAC
26427321 ATAAAATTTA
1 ATAAAATTTA
26427331 TATATTTGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (37 bp):
ATAAAATTTAAAATACATTTACTTAATATTATTACAC
Found at i:26427422 original size:18 final size:17
Alignment explanation
Indices: 26427395--26427433 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
26427385 AAATAATGTG
*
26427395 TTATTTATATATCACATA
1 TTATTCATATATCA-ATA
*
26427413 TTATTCATATATTAATA
1 TTATTCATATATCAATA
26427430 TTAT
1 TTAT
26427434 AAATGTCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (17 bp):
TTATTCATATATCAATA
Found at i:26428331 original size:21 final size:20
Alignment explanation
Indices: 26428301--26428339 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
26428291 AATTTAAAAT
26428301 TTTAAAAAAATCATAAATAAA
1 TTTAAAAAAATCA-AAATAAA
*
26428322 TTTAATAAAATCAAAATA
1 TTTAAAAAAATCAAAATA
26428340 TTATATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (20 bp):
TTTAAAAAAATCAAAATAAA
Found at i:26428812 original size:17 final size:16
Alignment explanation
Indices: 26428760--26428812 Score: 63
Period size: 15 Copynumber: 3.3 Consensus size: 16
26428750 AAACTATATC
* *
26428760 AATAATTTAAATTATA
1 AATAATTTTAATAATA
*
26428776 AA-AATTTTAATAAAA
1 AATAATTTTAATAATA
26428791 AATAATTTTAACTAATA
1 AATAATTTTAA-TAATA
26428808 AATAA
1 AATAA
26428813 ATTATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
15 12 0.39
16 10 0.32
17 9 0.29
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
AATAATTTTAATAATA
Found at i:26428869 original size:15 final size:17
Alignment explanation
Indices: 26428850--26428888 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
26428840 TAAATATAAA
26428850 ATAATATAATATT-ATT
1 ATAATATAATATTAATT
*
26428866 -TAATCTAATATTAATT
1 ATAATATAATATTAATT
26428882 ATAATAT
1 ATAATAT
26428889 TATTCTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
15 11 0.58
16 3 0.16
17 5 0.26
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
ATAATATAATATTAATT
Found at i:26436181 original size:2 final size:2
Alignment explanation
Indices: 26436176--26436206 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26436166 GTTGTTTTCT
26436176 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26436207 TTTTTTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26448065 original size:11 final size:11
Alignment explanation
Indices: 26448048--26448088 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
26448038 TTGTACGGAT
26448048 AAAGAAATTGG
1 AAAGAAATTGG
*
26448059 CAAGAAATTGG
1 AAAGAAATTGG
*
26448070 AAAGAAATAGG
1 AAAGAAATTGG
26448081 AAAGAAAT
1 AAAGAAAT
26448089 AGGGGGGAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.59, C:0.02, G:0.24, T:0.15
Consensus pattern (11 bp):
AAAGAAATTGG
Found at i:26448971 original size:26 final size:26
Alignment explanation
Indices: 26448942--26449012 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 26
26448932 ACTGATTTGA
26448942 TATATATATATATATAAAAATTTAAT
1 TATATATATATATATAAAAATTTAAT
* ***
26448968 TATATATATTTATATATTTATTTAAT
1 TATATATATATATATAAAAATTTAAT
* *
26448994 TTTATATTTATAT-TAAAAA
1 TATATATATATATATAAAAA
26449013 ATAATATTTT
Statistics
Matches: 35, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
25 3 0.09
26 32 0.91
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (26 bp):
TATATATATATATATAAAAATTTAAT
Found at i:26448986 original size:22 final size:22
Alignment explanation
Indices: 26448946--26449006 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
26448936 ATTTGATATA
* * *
26448946 TATATATATATAAAAATTTAAT
1 TATATATATTTATATATTTAAT
*
26448968 TATATATATTTATATATTTATT
1 TATATATATTTATATATTTAAT
*
26448990 TAATTTTATATTTATAT
1 T-A-TATATATTTATAT
26449007 TAAAAAATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 19 0.59
23 1 0.03
24 12 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TATATATATTTATATATTTAAT
Found at i:26449025 original size:20 final size:21
Alignment explanation
Indices: 26449000--26449045 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
26448990 TAATTTTATA
26449000 TTTATA-TTAAAAAATAATAT
1 TTTATATTTAAAAAATAATAT
*
26449020 TTTATATTTTAAAAATAATAT
1 TTTATATTTAAAAAATAATAT
26449041 TTTAT
1 TTTAT
26449046 TAATTTCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTATATTTAAAAAATAATAT
Found at i:26449056 original size:21 final size:21
Alignment explanation
Indices: 26449000--26449051 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
26448990 TAATTTTATA
*
26449000 TTTAT-ATTAAAAAATAATAT
1 TTTATAATTTAAAAATAATAT
*
26449020 TTTATATTTTAAAAATAATAT
1 TTTATAATTTAAAAATAATAT
26449041 TTTATTAATTT
1 TTTA-TAATTT
26449052 CAAATCAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 5 0.19
21 17 0.63
22 5 0.19
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TTTATAATTTAAAAATAATAT
Found at i:26449096 original size:32 final size:31
Alignment explanation
Indices: 26449039--26449098 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
26449029 TAAAAATAAT
*
26449039 ATTTTATTAATTTCAAATCAAATCGAATACG
1 ATTTTATTAATATCAAATCAAATCGAATACG
* *
26449070 ATTTTATATAATATCGAATTAAATCGAAT
1 ATTTTAT-TAATATCAAATCAAATCGAAT
26449099 TCAAATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (31 bp):
ATTTTATTAATATCAAATCAAATCGAATACG
Found at i:26455690 original size:28 final size:27
Alignment explanation
Indices: 26455650--26455705 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
26455640 AAAAATACTC
*
26455650 ATAACAAACAAATAGAAACATCAAATAA
1 ATAACAAAAAAATAGAAA-ATCAAATAA
* * *
26455678 ATAATAAAAAAATATAAATTCAAATAA
1 ATAACAAAAAAATAGAAAATCAAATAA
26455705 A
1 A
26455706 ATTATATATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.70, C:0.09, G:0.02, T:0.20
Consensus pattern (27 bp):
ATAACAAAAAAATAGAAAATCAAATAA
Found at i:26455945 original size:14 final size:14
Alignment explanation
Indices: 26455909--26455951 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
26455899 AGTGAAAAAT
*
26455909 ATTTTTAAATATTTG
1 ATTTTTAAAT-TTAG
*
26455924 ATAATTTAAATTTAG
1 AT-TTTTAAATTTAG
26455939 ATTTTTAAATTTA
1 ATTTTTAAATTTA
26455952 AGGATAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 10 0.42
15 7 0.29
16 7 0.29
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (14 bp):
ATTTTTAAATTTAG
Found at i:26457576 original size:17 final size:18
Alignment explanation
Indices: 26457549--26457583 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
26457539 AAAATGTTTA
26457549 AAAATAAATTAAAAATTT
1 AAAATAAATTAAAAATTT
*
26457567 AAAA-AAATTAAATATTT
1 AAAATAAATTAAAAATTT
26457584 TATCATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
AAAATAAATTAAAAATTT
Found at i:26458517 original size:21 final size:21
Alignment explanation
Indices: 26458471--26458532 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 21
26458461 TAAATATATT
* *
26458471 TAAAAATATT-AAATATTTATA
1 TAAAAA-ATTAAAAAATTAATA
26458492 TTAAAATAA-TAAAAAATTAATA
1 -TAAAA-AATTAAAAAATTAATA
*
26458514 TAAAAAATTAATAAATTAA
1 TAAAAAATTAAAAAATTAA
26458533 ACCGATAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
20 2 0.06
21 16 0.47
22 15 0.44
23 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAAAATTAAAAAATTAATA
Found at i:26458518 original size:13 final size:13
Alignment explanation
Indices: 26458500--26458526 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26458490 TATTAAAATA
26458500 ATAAAAAATTAAT
1 ATAAAAAATTAAT
26458513 ATAAAAAATTAAT
1 ATAAAAAATTAAT
26458526 A
1 A
26458527 AATTAAACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAAAAAATTAAT
Found at i:26460932 original size:23 final size:23
Alignment explanation
Indices: 26460889--26460942 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
26460879 CACTTTACCC
*
26460889 AATAATT-TAACATTAAATATTT
1 AATAATTATAACATTAAATATTG
* *
26460911 AATAATTATAATATTAACTATTG
1 AATAATTATAACATTAAATATTG
26460934 AAT-ATTATA
1 AATAATTATA
26460943 TTAAATTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 13 0.46
23 15 0.54
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (23 bp):
AATAATTATAACATTAAATATTG
Found at i:26460957 original size:30 final size:29
Alignment explanation
Indices: 26460923--26461016 Score: 81
Period size: 25 Copynumber: 3.3 Consensus size: 29
26460913 TAATTATAAT
* *
26460923 ATTAACTATTGAATATTATATTAAATTTTA
1 ATTAAATATTGAATATTATA-TAAATATTA
**
26460953 ATTAAATATTTTATATTATAT-AA-A-T-
1 ATTAAATATTGAATATTATATAAATATTA
* *
26460978 ATTAAATATTTACTATTATAT-AATATCTA
1 ATTAAATATTGAATATTATATAAATAT-TA
26461007 ATTAAATATT
1 ATTAAATATT
26461017 ATGTAACGTT
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
25 21 0.39
26 2 0.04
28 3 0.06
29 11 0.20
30 17 0.31
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (29 bp):
ATTAAATATTGAATATTATATAAATATTA
Found at i:26460981 original size:25 final size:25
Alignment explanation
Indices: 26460900--26461000 Score: 98
Period size: 25 Copynumber: 3.9 Consensus size: 25
26460890 ATAATTTAAC
*
26460900 ATTAAATATTTAATAAT-TAT-AAT
1 ATTAAATATTTAATATTATATAAAT
* *
26460923 ATTAACTATTGAATATTATATTAAATTTT
1 ATTAAATATTTAATATTATA-TAAA---T
*
26460952 AATTAAATATTTTATATTATATAAAT
1 -ATTAAATATTTAATATTATATAAAT
*
26460978 ATTAAATATTTACTATTATATAA
1 ATTAAATATTTAATATTATATAA
26461001 TATCTAATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
23 14 0.22
24 2 0.03
25 22 0.35
26 3 0.05
29 5 0.08
30 17 0.27
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.50
Consensus pattern (25 bp):
ATTAAATATTTAATATTATATAAAT
Found at i:26461149 original size:26 final size:26
Alignment explanation
Indices: 26461096--26461153 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 26
26461086 ATATAATATT
*
26461096 TATTTAAATGTTATATAATATTTAAA
1 TATTTAAATGTTATATAATAATTAAA
26461122 TATTTAATAT-TTATATAATAAATT-AA
1 TATTTAA-ATGTTATATAAT-AATTAAA
26461148 TATTTA
1 TATTTA
26461154 TTTCAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (26 bp):
TATTTAAATGTTATATAATAATTAAA
Found at i:26461236 original size:22 final size:24
Alignment explanation
Indices: 26461200--26461244 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
26461190 GTAAGAAAAT
26461200 ATAATATTAAATAATTA-TATTTA
1 ATAATATTAAATAATTATTATTTA
*
26461223 ATAAT-TTATATAATTATTATTT
1 ATAATATTAAATAATTATTATTT
26461245 TTAGAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
ATAATATTAAATAATTATTATTTA
Found at i:26461513 original size:21 final size:20
Alignment explanation
Indices: 26461464--26461527 Score: 59
Period size: 16 Copynumber: 3.4 Consensus size: 20
26461454 TGTACATTTT
26461464 CAAAAATTTGAAAAC-AAAA
1 CAAAAATTTGAAAACAAAAA
26461483 C-AAAA--T-AAAACAAAAA
1 CAAAAATTTGAAAACAAAAA
26461499 CAAAAATTTTGAAAACTGAAAAA
1 CAAAAA-TTTGAAAAC--AAAAA
26461522 -AAAAAT
1 CAAAAAT
26461528 ATAAAACAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
15 5 0.14
16 6 0.16
17 4 0.11
18 4 0.11
19 1 0.03
20 1 0.03
21 6 0.16
22 5 0.14
23 5 0.14
ACGTcount: A:0.70, C:0.09, G:0.05, T:0.16
Consensus pattern (20 bp):
CAAAAATTTGAAAACAAAAA
Found at i:26463601 original size:26 final size:26
Alignment explanation
Indices: 26463572--26463623 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26463562 TATTTTCCTA
26463572 TTTTCTC--TTTCTTTTATTTATTTATT
1 TTTTCTCTGTTTC-TTTA-TTATTTATT
*
26463598 TTTTTTCTGTTTCTTTATTATTTATT
1 TTTTCTCTGTTTCTTTATTATTTATT
26463624 GTTTGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 15 0.65
27 4 0.17
28 4 0.17
ACGTcount: A:0.12, C:0.10, G:0.02, T:0.77
Consensus pattern (26 bp):
TTTTCTCTGTTTCTTTATTATTTATT
Found at i:26463797 original size:41 final size:41
Alignment explanation
Indices: 26463751--26463832 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
26463741 ATGATATTGT
* *
26463751 TATTTGCATAATT-ATATATTAATTGCCTGATTATGTATTTA
1 TATTTGCATAATTAAT-TATTAATTGCATGATTATATATTTA
* * *
26463792 TATTTGCATGATTAATTATTATTTGCATGGTTATATATTTA
1 TATTTGCATAATTAATTATTAATTGCATGATTATATATTTA
26463833 ATTATATGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 33 0.94
42 2 0.06
ACGTcount: A:0.30, C:0.06, G:0.11, T:0.52
Consensus pattern (41 bp):
TATTTGCATAATTAATTATTAATTGCATGATTATATATTTA
Found at i:26463826 original size:60 final size:58
Alignment explanation
Indices: 26463716--26463835 Score: 145
Period size: 60 Copynumber: 2.0 Consensus size: 58
26463706 GTACTTACTT
*
26463716 TTGCATGATTTGTATTATTACTTGCATGATATTGTTATTTGCATAATTATATA-TTAA
1 TTGCATGATTTGTATTATTACTTGCATGATATTATTATTTGCATAATTATATATTTAA
* * **
26463773 TTGCCTGATTATGTATT-TATATTTGCATGATTAATTATTATTTGCATGGTTATATATTTAA
1 TTGCATGATT-TGTATTAT-TACTTGCATGA-T-ATTATTATTTGCATAATTATATATTTAA
26463834 TT
1 TT
26463836 ATATGATTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
57 10 0.19
58 16 0.30
59 1 0.02
60 20 0.38
61 6 0.11
ACGTcount: A:0.28, C:0.07, G:0.12, T:0.53
Consensus pattern (58 bp):
TTGCATGATTTGTATTATTACTTGCATGATATTATTATTTGCATAATTATATATTTAA
Found at i:26463847 original size:20 final size:20
Alignment explanation
Indices: 26463822--26463885 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
26463812 ATTTGCATGG
26463822 TTATATATTTAATTATATGA
1 TTATATATTTAATTATATGA
* *
26463842 TTATATATTTAATTACATAA
1 TTATATATTTAATTATATGA
*
26463862 TTATATATTTAATTGTATGA
1 TTATATATTTAATTATATGA
26463882 TTAT
1 TTAT
26463886 TAATATATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (20 bp):
TTATATATTTAATTATATGA
Found at i:26463946 original size:19 final size:20
Alignment explanation
Indices: 26463915--26463953 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
26463905 TATTTGCATG
26463915 ATAATTATTGCATGATATTT
1 ATAATTATTGCATGATATTT
26463935 ATAATT-TTGCATGATATTT
1 ATAATTATTGCATGATATTT
26463954 TTGAATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (20 bp):
ATAATTATTGCATGATATTT
Found at i:26464056 original size:38 final size:38
Alignment explanation
Indices: 26463999--26464074 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
26463989 TATGGTATGG
*
26463999 TTTTATATTCATTGCATGATTTATTGCATGGTATGATA
1 TTTTATATTCATTGCATGATTTATTGCATGGCATGATA
* * *
26464037 TTTTATATTTATTGTATGATTTATTGCATTGCATGATA
1 TTTTATATTCATTGCATGATTTATTGCATGGCATGATA
26464075 AGTTTGGCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.26, C:0.07, G:0.14, T:0.53
Consensus pattern (38 bp):
TTTTATATTCATTGCATGATTTATTGCATGGCATGATA
Done.