Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 167 of 190
Found at i:27249102 original size:23 final size:22
Alignment explanation
Indices: 27249048--27249095 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
27249038 ACATAAAAAA
27249048 TAAAATTTTAAATATATATATT
1 TAAAATTTTAAATATATATATT
* *
27249070 TATAATTTTAAA-ATATTTATT
1 TAAAATTTTAAATATATATATT
27249091 TAAAA
1 TAAAA
27249096 ATATTTACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TAAAATTTTAAATATATATATT
Found at i:27249147 original size:14 final size:13
Alignment explanation
Indices: 27249125--27249162 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
27249115 AAAAAAATTT
27249125 AAAAT-TAAAAAA
1 AAAATATAAAAAA
27249137 CAAAATATAAATAAA
1 -AAAATATAAA-AAA
27249152 AAAATATAAAA
1 AAAATATAAAA
27249163 TGGTAGCCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 6 0.26
14 14 0.61
15 3 0.13
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (13 bp):
AAAATATAAAAAA
Found at i:27252093 original size:21 final size:21
Alignment explanation
Indices: 27252064--27252106 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
27252054 TGTTATAAAC
27252064 TAATGTGATGTATAAGCCTTT
1 TAATGTGATGTATAAGCCTTT
* *
27252085 TAATTTGATGTATAGGCCTTT
1 TAATGTGATGTATAAGCCTTT
27252106 T
1 T
27252107 GTTGTGCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.47
Consensus pattern (21 bp):
TAATGTGATGTATAAGCCTTT
Found at i:27252175 original size:46 final size:46
Alignment explanation
Indices: 27252123--27252217 Score: 127
Period size: 46 Copynumber: 2.1 Consensus size: 46
27252113 CATTTTGTGT
* * *
27252123 TGGTCTTATAAACTAATGGGTTGTTTTTGTTCAATAAAAATGATGA
1 TGGTCTTATAAACCAATGGCTTATTTTTGTTCAATAAAAATGATGA
* * **
27252169 TGGTCTTATAAACCAGTGGCTTATTTTTGTTTAATAGGAATGATGA
1 TGGTCTTATAAACCAATGGCTTATTTTTGTTCAATAAAAATGATGA
27252215 TGG
1 TGG
27252218 CCTATTTTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.41
Consensus pattern (46 bp):
TGGTCTTATAAACCAATGGCTTATTTTTGTTCAATAAAAATGATGA
Found at i:27252226 original size:30 final size:30
Alignment explanation
Indices: 27252185--27252303 Score: 112
Period size: 30 Copynumber: 3.7 Consensus size: 30
27252175 TATAAACCAG
*
27252185 TGGCTTATTTTTGTTTAATAGGAATGATGA
1 TGGCCTATTTTTGTTTAATAGGAATGATGA
*
27252215 TGGCCTATTTTTATTTAATAGGAATGTTGTACTAGCATA
1 TGGCCTATTTTTGTTTAATAGGAA---TG-A-T-G---A
*
27252254 TAGCCTATTTTTGTTTAATAGGAATGATGA
1 TGGCCTATTTTTGTTTAATAGGAATGATGA
* *
27252284 TGACCTATTTTTGTTCAATA
1 TGGCCTATTTTTGTTTAATA
27252304 AAAATGTGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 18
0.74 0.07 0.18
Matches are distributed among these distances:
30 40 0.55
33 3 0.04
34 2 0.03
35 2 0.03
36 3 0.04
39 23 0.32
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.45
Consensus pattern (30 bp):
TGGCCTATTTTTGTTTAATAGGAATGATGA
Found at i:27252363 original size:23 final size:24
Alignment explanation
Indices: 27252333--27252377 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
27252323 TTACTAGCAG
* *
27252333 ATGGCCTT-ATTTTTTTCAATATA
1 ATGGCCTTCAATTTTTACAATATA
27252356 ATGGCCTTCAATTTTTACAATA
1 ATGGCCTTCAATTTTTACAATA
27252378 AGAATGCTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.47
Consensus pattern (24 bp):
ATGGCCTTCAATTTTTACAATATA
Found at i:27252383 original size:25 final size:23
Alignment explanation
Indices: 27252333--27252383 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
27252323 TTACTAGCAG
* * *
27252333 ATGGCCTTATTTTTTTCAATATA
1 ATGGCCTTAATTTTTACAATAGA
27252356 ATGGCCTTCAATTTTTACAATAAGA
1 ATGGCCTT-AATTTTTACAAT-AGA
27252381 ATG
1 ATG
27252384 CTAGCTTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 8 0.35
24 10 0.43
25 5 0.22
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (23 bp):
ATGGCCTTAATTTTTACAATAGA
Found at i:27255299 original size:14 final size:14
Alignment explanation
Indices: 27255280--27255315 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
27255270 AACAATTTTA
27255280 AATTATAAT-TAATT
1 AATTATAATATAA-T
27255294 AATTATAATATAAT
1 AATTATAATATAAT
27255308 AATTATAA
1 AATTATAA
27255316 GTGATACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 18 0.86
15 3 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AATTATAATATAAT
Found at i:27258875 original size:26 final size:26
Alignment explanation
Indices: 27258845--27258896 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
27258835 CTTAAGAGTG
27258845 GCAAGTAACTTTTGATTGGTCACTTT
1 GCAAGTAACTTTTGATTGGTCACTTT
*
27258871 GCAAGTAGCTTTTGATTGGTCACTTT
1 GCAAGTAACTTTTGATTGGTCACTTT
27258897 CAATGCTGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.42
Consensus pattern (26 bp):
GCAAGTAACTTTTGATTGGTCACTTT
Found at i:27264422 original size:39 final size:39
Alignment explanation
Indices: 27264378--27264458 Score: 135
Period size: 39 Copynumber: 2.1 Consensus size: 39
27264368 AAAAAATAGA
*
27264378 AAACAAAACAAAATTATTTCAAAACATGGCAGGGATACC
1 AAACAAAACAAAACTATTTCAAAACATGGCAGGGATACC
* *
27264417 AAACAAAACAAAACTATTTGAAGACATGGCAGGGATACC
1 AAACAAAACAAAACTATTTCAAAACATGGCAGGGATACC
27264456 AAA
1 AAA
27264459 AGCATGTACA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.52, C:0.17, G:0.15, T:0.16
Consensus pattern (39 bp):
AAACAAAACAAAACTATTTCAAAACATGGCAGGGATACC
Found at i:27265673 original size:25 final size:27
Alignment explanation
Indices: 27265626--27265685 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 27
27265616 ATTATTATAT
* * *
27265626 TATAATTTTTGTTAATATATT-AAT-A
1 TATAATTTTTATAAAAATATTAAATAA
*
27265651 TATAATTTTTATAAAAATTTTAAATAA
1 TATAATTTTTATAAAAATATTAAATAA
27265678 TATAATTT
1 TATAATTT
27265686 ATTTTTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 17 0.59
26 3 0.10
27 9 0.31
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (27 bp):
TATAATTTTTATAAAAATATTAAATAA
Found at i:27267669 original size:3 final size:3
Alignment explanation
Indices: 27267661--27267688 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
27267651 TCAATAAAGA
27267661 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
27267689 TTATATTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:27269258 original size:21 final size:22
Alignment explanation
Indices: 27269205--27269258 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
27269195 TTAATGACTA
*
27269205 ATAATTATAAATACAAAAAAAG
1 ATAATTATATATACAAAAAAAG
*
27269227 ATAATTGATATATA-AATAAAA-
1 ATAATT-ATATATACAAAAAAAG
27269248 ATAAATTATAT
1 AT-AATTATAT
27269259 TTTTTTTTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 6 0.21
22 16 0.57
23 6 0.21
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (22 bp):
ATAATTATATATACAAAAAAAG
Found at i:27269287 original size:18 final size:19
Alignment explanation
Indices: 27269264--27269302 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
27269254 TATATTTTTT
27269264 TTTACA-AAAAAAAATAAA
1 TTTACAGAAAAAAAATAAA
* *
27269282 TTTACAGTATAAAAATAAA
1 TTTACAGAAAAAAAATAAA
27269301 TT
1 TT
27269303 AAATAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.31
Consensus pattern (19 bp):
TTTACAGAAAAAAAATAAA
Found at i:27270025 original size:23 final size:24
Alignment explanation
Indices: 27269981--27270036 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
27269971 ACTCGATTCG
27269981 AAAT-TAATAAAATATTATTTTTTA
1 AAATATAA-AAAATATTATTTTTTA
27270005 AAATATAAAAAATATTATTTTTT-
1 AAATATAAAAAATATTATTTTTTA
27270028 AAATATAAA
1 AAATATAAA
27270037 TATTTAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 9 0.29
24 19 0.61
25 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
AAATATAAAAAATATTATTTTTTA
Found at i:27270082 original size:28 final size:28
Alignment explanation
Indices: 27270005--27270088 Score: 73
Period size: 28 Copynumber: 3.0 Consensus size: 28
27269995 TTATTTTTTA
* *
27270005 AAATA-TAAAAAATATTATTTTTTAAATAT
1 AAATATTAAAAAATA-TA-ATTATAAATAT
* *
27270034 AAATATTTAAAAATATCATTATAAATAT
1 AAATATTAAAAAATATAATTATAAATAT
* *
27270062 ATATAATTAAAAAAT-TAATTAAAAATA
1 AAAT-ATTAAAAAATATAATTATAAATA
27270089 ATTTTTTATA
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
28 22 0.49
29 15 0.33
30 8 0.18
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (28 bp):
AAATATTAAAAAATATAATTATAAATAT
Found at i:27278915 original size:24 final size:24
Alignment explanation
Indices: 27278888--27278936 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
27278878 TGATCTTTTT
*
27278888 AATATAATAAATAT-ATAAAAATAA
1 AATAAAATAAA-ATGATAAAAATAA
27278912 AATAAAATAAAATGATAAAAATAA
1 AATAAAATAAAATGATAAAAATAA
27278936 A
1 A
27278937 GTTATATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 2 0.09
24 21 0.91
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (24 bp):
AATAAAATAAAATGATAAAAATAA
Found at i:27279110 original size:18 final size:17
Alignment explanation
Indices: 27279087--27279143 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 17
27279077 ACTTCCTTAG
27279087 AAATTTTAAAATATTTAA
1 AAATTTTAAAATA-TTAA
27279105 AAATTTTATTAAATATT-A
1 AAATTTTA--AAATATTAA
*
27279123 AAATTTTAAAAAATTAA
1 AAATTTTAAAATATTAA
27279140 AAAT
1 AAAT
27279144 GAAAAAAGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
16 6 0.17
17 5 0.14
18 17 0.49
19 2 0.06
20 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AAATTTTAAAATATTAA
Found at i:27283664 original size:65 final size:67
Alignment explanation
Indices: 27283595--27283753 Score: 196
Period size: 68 Copynumber: 2.4 Consensus size: 67
27283585 AATTATTACG
* *
27283595 TTTAGATTCAAAGAAATGCATTAATTAAGATTTAA-T-TAAAAAAATGACAATAAACAATTACTG
1 TTTAGATTCAAAGAAATGCAATAATTAAGATTAAACTATAAAAAAATGACAATAAACAATTACTG
27283658 CA
66 CA
* * * * *
27283660 TTTAGCTTCAAAGAAATACAGTAATTAATATTAAAGCTATAAAAAAATGACAATTAACAATTACT
1 TTTAGATTCAAAGAAATGCAATAATTAAGATTAAA-CTATAAAAAAATGACAATAAACAATTACT
**
27283725 GTG
65 GCA
* *
27283728 TTTAGTTTCAAAGAAACGCAATAATT
1 TTTAGATTCAAAGAAATGCAATAATT
27283754 GGGCTTTATC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
65 30 0.38
67 1 0.01
68 48 0.61
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.31
Consensus pattern (67 bp):
TTTAGATTCAAAGAAATGCAATAATTAAGATTAAACTATAAAAAAATGACAATAAACAATTACTG
CA
Found at i:27283753 original size:68 final size:65
Alignment explanation
Indices: 27283565--27283753 Score: 200
Period size: 65 Copynumber: 2.9 Consensus size: 65
27283555 ATTACTCATT
* * * * * *
27283565 TTAAAAAAATTATAATGAAA-AATTATTACGTTTAGATTCAAAGAAATGCATTAATTAAGATTTA
1 TTAAAAAAATGACAAT-AAACAATTACTGCGTTTAGATTCAAAGAAATGCAATAATTAAGATTAA
27283629 A
65 A
* * * * *
27283630 TTAAAAAAATGACAATAAACAATTACTGCATTTAGCTTCAAAGAAATACAGTAATTAATATTAAA
1 TTAAAAAAATGACAATAAACAATTACTGCGTTTAGATTCAAAGAAATGCAATAATTAAGATTAAA
* * * *
27283695 GCTATAAAAAAATGACAATTAACAATTACTGTGTTTAGTTTCAAAGAAACGCAATAATT
1 --T-TAAAAAAATGACAATAAACAATTACTGCGTTTAGATTCAAAGAAATGCAATAATT
27283754 GGGCTTTATC
Statistics
Matches: 103, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
64 3 0.03
65 51 0.50
67 1 0.01
68 48 0.47
ACGTcount: A:0.50, C:0.09, G:0.10, T:0.32
Consensus pattern (65 bp):
TTAAAAAAATGACAATAAACAATTACTGCGTTTAGATTCAAAGAAATGCAATAATTAAGATTAAA
Found at i:27290266 original size:4 final size:4
Alignment explanation
Indices: 27290250--27290302 Score: 52
Period size: 4 Copynumber: 12.8 Consensus size: 4
27290240 GGCCAAAGTT
* * * *
27290250 TTTA TTCA TTTA TTTA TTTA TTTG TTAAA TTGA TGTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA TTTA
27290300 TTT
1 TTT
27290303 TGCGAATAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
4 35 0.88
5 5 0.12
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:27290420 original size:16 final size:17
Alignment explanation
Indices: 27290389--27290421 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
27290379 TTAGGAAAGG
*
27290389 TTAAAATATCAATTTTT
1 TTAAAATATAAATTTTT
27290406 TTAAAATA-AAATTTTT
1 TTAAAATATAAATTTTT
27290422 AAAAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (17 bp):
TTAAAATATAAATTTTT
Found at i:27290557 original size:59 final size:57
Alignment explanation
Indices: 27290442--27290703 Score: 296
Period size: 58 Copynumber: 4.5 Consensus size: 57
27290432 TGAAGAAAAG
* *
27290442 TTAAAAAT-GAAATTTTCAAAAAAAATTTTTTGAGGAAAAA-TTGAAGTATTAATTTTT
1 TTAAAAATAAAAATTTT-AAAAAATATTTTTTGA-GAAAAAGTTGAAGTATTAATTTTT
* *
27290499 CTTAAAAATAAAAATTTTAAAAAATATTTTTTTAGAAAAA-TTGTAAGTATCAATTTTTT
1 -TTAAAAATAAAAATTTTAAAAAATATTTTTTGAGAAAAAGTTG-AAGTATTAA-TTTTT
* * *
27290558 TTGAAGATAAAAAATTTAAAAAATATTTTTTTGAAGAAAAAGTTGAAGTATTAATTTTT
1 TTAAAAATAAAAATTTTAAAAAATA-TTTTTTG-AGAAAAAGTTGAAGTATTAATTTTT
* * * * *
27290617 CTTAAAATTGAAATTTTTAAAAAATATTTTTTGAGAAAAAGTTAAAAATATTAATTTTCT
1 -TTAAAAATAAAAATTTTAAAAAATATTTTTTGAGAAAAAGTT-GAAGTATTAATTTT-T
27290677 TTAAAAATAAAAATTTTCAAAAAATAT
1 TTAAAAATAAAAATTTT-AAAAAATAT
27290704 ATTTAAAAAG
Statistics
Matches: 174, Mismatches: 20, Indels: 18
0.82 0.09 0.08
Matches are distributed among these distances:
57 9 0.05
58 62 0.36
59 56 0.32
60 44 0.25
61 3 0.02
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.41
Consensus pattern (57 bp):
TTAAAAATAAAAATTTTAAAAAATATTTTTTGAGAAAAAGTTGAAGTATTAATTTTT
Found at i:27290604 original size:118 final size:119
Alignment explanation
Indices: 27290442--27290703 Score: 343
Period size: 118 Copynumber: 2.2 Consensus size: 119
27290432 TGAAGAAAAG
* * * *
27290442 TTAAAAAT-GAAATTTTCAAAAAA-AATTTTTTGAGGAAAAATTGAAGTATTAATTTTTCTTAAA
1 TTAAAAATAAAAAATTTCAAAAAATATTTTTTTGAAGAAAAATTGAAGTATTAATTTTTCTTAAA
* ** * *
27290505 AATAAAAATTTTAAAAAATATTTTTTTAGAAAAA-TTGTAAGTATCAATTTTTT
66 AATAAAAATTTTAAAAAATATTTTTTGAGAAAAAGTTAAAAATATCAATTTTCT
* *
27290558 TTGAAGATAAAAAATTT-AAAAAATATTTTTTTGAAGAAAAAGTTGAAGTATTAATTTTTCTTAA
1 TTAAAAATAAAAAATTTCAAAAAATATTTTTTTGAAGAAAAA-TTGAAGTATTAATTTTTCTTAA
* * * *
27290622 AATTGAAATTTTTAAAAAATATTTTTTGAGAAAAAGTTAAAAATATTAATTTTCT
65 AAATAAAAATTTTAAAAAATATTTTTTGAGAAAAAGTTAAAAATATCAATTTTCT
*
27290677 TTAAAAATAAAAATTTTCAAAAAATAT
1 TTAAAAATAAAAAATTTCAAAAAATAT
27290704 ATTTAAAAAG
Statistics
Matches: 123, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
116 12 0.10
117 21 0.17
118 53 0.43
119 28 0.23
120 9 0.07
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.41
Consensus pattern (119 bp):
TTAAAAATAAAAAATTTCAAAAAATATTTTTTTGAAGAAAAATTGAAGTATTAATTTTTCTTAAA
AATAAAAATTTTAAAAAATATTTTTTGAGAAAAAGTTAAAAATATCAATTTTCT
Found at i:27290691 original size:19 final size:19
Alignment explanation
Indices: 27290658--27290694 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
27290648 TGAGAAAAAG
**
27290658 TTAAAAATATTAATTTTCT
1 TTAAAAATAAAAATTTTCT
27290677 TTAAAAATAAAAATTTTC
1 TTAAAAATAAAAATTTTC
27290695 AAAAAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
TTAAAAATAAAAATTTTCT
Found at i:27291240 original size:24 final size:22
Alignment explanation
Indices: 27291213--27291276 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 22
27291203 TAAAAAAATT
27291213 AATAACAATTTTTCAATTATATCA
1 AATAA-AATTTTTCAATT-TATCA
27291237 AATAATAAATTTATT-AATTTATCA
1 AAT-A-AAATTT-TTCAATTTATCA
* *
27291261 CATTAAATTTTTCAAT
1 AATAAAATTTTTCAAT
27291277 ATCATGCATC
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
21 2 0.06
22 9 0.26
24 10 0.29
25 10 0.29
26 3 0.09
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (22 bp):
AATAAAATTTTTCAATTTATCA
Found at i:27292768 original size:12 final size:12
Alignment explanation
Indices: 27292750--27292780 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
27292740 TATTTTTAAT
27292750 TAATTATTTATA
1 TAATTATTTATA
*
27292762 TATTTATTTATA
1 TAATTATTTATA
27292774 TAATTAT
1 TAATTAT
27292781 ATATTTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TAATTATTTATA
Found at i:27294924 original size:51 final size:50
Alignment explanation
Indices: 27294857--27294961 Score: 122
Period size: 51 Copynumber: 2.1 Consensus size: 50
27294847 CATATGAATG
* * *
27294857 AAATTGTAATAGTAATAAAATACA-TCTTGAAAAAAAATTTGTAAACAAAAA
1 AAATTGCAATAATAATAAAATACAGT-TT-AAAAAAAAGTTGTAAACAAAAA
* * **
27294908 AAATTGCAATAATAATATAATACAGTTTAGAAAAAAGTTGTAAACTGAAA
1 AAATTGCAATAATAATAAAATACAGTTTAAAAAAAAGTTGTAAACAAAAA
27294958 AAAT
1 AAAT
27294962 AAAAAATTGA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
50 22 0.48
51 23 0.50
52 1 0.02
ACGTcount: A:0.57, C:0.06, G:0.10, T:0.28
Consensus pattern (50 bp):
AAATTGCAATAATAATAAAATACAGTTTAAAAAAAAGTTGTAAACAAAAA
Found at i:27303873 original size:22 final size:22
Alignment explanation
Indices: 27303848--27303889 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
27303838 TTGTCTATCC
* *
27303848 TAATTTTAGGGATACAAATACT
1 TAATTCTAGAGATACAAATACT
27303870 TAATTCTAGAGATACAAATA
1 TAATTCTAGAGATACAAATA
27303890 TAAATATACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (22 bp):
TAATTCTAGAGATACAAATACT
Found at i:27304944 original size:26 final size:26
Alignment explanation
Indices: 27304908--27304961 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
27304898 TTTTTCTCTG
27304908 ATAACATCTCCAATTATTCATATTGT
1 ATAACATCTCCAATTATTCATATTGT
*
27304934 ATAACATCTCCAATTATTCCTATTGT
1 ATAACATCTCCAATTATTCATATTGT
27304960 AT
1 AT
27304962 TGGGTTTAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (26 bp):
ATAACATCTCCAATTATTCATATTGT
Found at i:27308128 original size:13 final size:13
Alignment explanation
Indices: 27308110--27308137 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
27308100 TATCAACTCG
27308110 TGTAATTGAAAGA
1 TGTAATTGAAAGA
27308123 TGTAATTGAAAGA
1 TGTAATTGAAAGA
27308136 TG
1 TG
27308138 AAATGCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.25, T:0.32
Consensus pattern (13 bp):
TGTAATTGAAAGA
Found at i:27310819 original size:22 final size:23
Alignment explanation
Indices: 27310776--27310820 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
27310766 AGTTGTTGGT
*
27310776 GTTGTTTTCATTTATTGCATGGA
1 GTTGTTCTCATTTATTGCATGGA
* *
27310799 GTTGTTCT-ATTTTTTGGATGGA
1 GTTGTTCTCATTTATTGCATGGA
27310821 TAATTTCATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.16, C:0.07, G:0.24, T:0.53
Consensus pattern (23 bp):
GTTGTTCTCATTTATTGCATGGA
Found at i:27320834 original size:21 final size:20
Alignment explanation
Indices: 27320809--27320855 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 20
27320799 ACAACGATGC
27320809 GATTAGTTACTATAATGATAA
1 GATTAG-TACTATAATGATAA
*
27320830 GATTAAGTACTATAATGATGA
1 GATT-AGTACTATAATGATAA
27320851 GATTA
1 GATTA
27320856 AAATCAATGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 21 0.88
22 2 0.08
ACGTcount: A:0.43, C:0.04, G:0.17, T:0.36
Consensus pattern (20 bp):
GATTAGTACTATAATGATAA
Found at i:27320856 original size:21 final size:21
Alignment explanation
Indices: 27320816--27320856 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
27320806 TGCGATTAGT
27320816 TACTATAATGATAAGATTAAG
1 TACTATAATGATAAGATTAAG
*
27320837 TACTATAATGATGAGATTAA
1 TACTATAATGATAAGATTAA
27320857 AATCAATGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.34
Consensus pattern (21 bp):
TACTATAATGATAAGATTAAG
Found at i:27325897 original size:20 final size:21
Alignment explanation
Indices: 27325872--27325919 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
27325862 TGTTCTCAAG
*
27325872 GATTAA-AAAGTGAAAATTGA
1 GATTAAGAAAGTAAAAATTGA
**
27325892 GATTAAGACTGTAAAAATTGA
1 GATTAAGAAAGTAAAAATTGA
27325913 GATTAAG
1 GATTAAG
27325920 GATCGAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.50, C:0.02, G:0.21, T:0.27
Consensus pattern (21 bp):
GATTAAGAAAGTAAAAATTGA
Found at i:27328526 original size:11 final size:11
Alignment explanation
Indices: 27328510--27328534 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
27328500 TCCCTTTCTC
27328510 CATACAATCTA
1 CATACAATCTA
27328521 CATACAATCTA
1 CATACAATCTA
27328532 CAT
1 CAT
27328535 TGATCATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (11 bp):
CATACAATCTA
Found at i:27334331 original size:18 final size:18
Alignment explanation
Indices: 27334308--27334343 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
27334298 AGACAATACA
27334308 ACATATTATATTTTTATT
1 ACATATTATATTTTTATT
27334326 ACATATTATATTTTTATT
1 ACATATTATATTTTTATT
27334344 TAGAAAGACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (18 bp):
ACATATTATATTTTTATT
Found at i:27340643 original size:42 final size:43
Alignment explanation
Indices: 27340596--27340682 Score: 133
Period size: 42 Copynumber: 2.0 Consensus size: 43
27340586 TTAAATATGT
* *
27340596 CATATTTTT-TTTATATTCTTTATTACAAAA-TTAAAATACAAA
1 CATATTTTTGTTTA-ATTATTTATTACAAAAGATAAAATACAAA
27340638 CATATTTTTGTTTAATTATTTATTACAAAAGATAAAATACAAA
1 CATATTTTTGTTTAATTATTTATTACAAAAGATAAAATACAAA
27340681 CA
1 CA
27340683 ATGTCGTAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
42 24 0.59
43 17 0.41
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.44
Consensus pattern (43 bp):
CATATTTTTGTTTAATTATTTATTACAAAAGATAAAATACAAA
Found at i:27341190 original size:20 final size:18
Alignment explanation
Indices: 27341165--27341207 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
27341155 TTTTAAATAT
27341165 CTATTTATCTTATTTTTTTA
1 CTATTTAT-TT-TTTTTTTA
*
27341185 CTATTTGTTTTTTTTTTA
1 CTATTTATTTTTTTTTTA
*
27341203 ATATT
1 CTATT
27341208 AAACATATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 12 0.57
19 2 0.10
20 7 0.33
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.72
Consensus pattern (18 bp):
CTATTTATTTTTTTTTTA
Found at i:27342587 original size:42 final size:42
Alignment explanation
Indices: 27342537--27342623 Score: 106
Period size: 42 Copynumber: 2.0 Consensus size: 42
27342527 TTAAATATGT
* *
27342537 CATATTTTTCTTCT-ATTCTTTGTTAC-AAAATCAAAATACAAA
1 CATATTTTTCTT-TAATTATTTATTACAAAAAT-AAAATACAAA
*
27342579 CATATTTTTGTTTAATTATTTATTACAAAAAATAAAATACAAA
1 CATATTTTTCTTTAATTATTTATTAC-AAAAATAAAATACAAA
27342622 CA
1 CA
27342624 ATGTTGTAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
41 1 0.03
42 21 0.54
43 12 0.31
44 5 0.13
ACGTcount: A:0.44, C:0.13, G:0.02, T:0.41
Consensus pattern (42 bp):
CATATTTTTCTTTAATTATTTATTACAAAAATAAAATACAAA
Found at i:27342819 original size:7 final size:7
Alignment explanation
Indices: 27342807--27342850 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
27342797 AGATTTTGTT
27342807 AATAAAA
1 AATAAAA
27342814 AATAAAA
1 AATAAAA
*
27342821 AATAATA
1 AATAAAA
27342828 AAT-AAA
1 AATAAAA
* *
27342834 TAGAAAA
1 AATAAAA
27342841 AATAAAA
1 AATAAAA
27342848 AAT
1 AAT
27342851 TAAGAAAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 3 0.10
7 27 0.90
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (7 bp):
AATAAAA
Found at i:27342842 original size:20 final size:18
Alignment explanation
Indices: 27342806--27342850 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
27342796 TAGATTTTGT
27342806 TAATAAA-AAATAAAAAA
1 TAATAAATAAATAAAAAA
*
27342823 TAATAAATAAATAGAAAA
1 TAATAAATAAATAAAAAA
27342841 -AATAAA-AAAT
1 TAATAAATAAAT
27342851 TAAGAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 4 0.15
17 13 0.50
18 9 0.35
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (18 bp):
TAATAAATAAATAAAAAA
Found at i:27342858 original size:17 final size:16
Alignment explanation
Indices: 27342807--27342858 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
27342797 AGATTTTGTT
*
27342807 AATAAAAAATAAAAAA
1 AATAAAAAATAAGAAA
27342823 TAATAAATAAAT-AGAAAA
1 -AATAAA-AAATAAG-AAA
27342841 AATAAAAAATTAAGAAA
1 AATAAAAAA-TAAGAAA
27342858 A
1 A
27342859 TTTTAGGGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
16 3 0.10
17 18 0.60
18 9 0.30
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (16 bp):
AATAAAAAATAAGAAA
Found at i:27343951 original size:16 final size:16
Alignment explanation
Indices: 27343930--27343960 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
27343920 ATTTTCAAAC
27343930 AAAAATTAATAAAATA
1 AAAAATTAATAAAATA
27343946 AAAAATTAATAAAAT
1 AAAAATTAATAAAAT
27343961 TTTAGAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAATTAATAAAATA
Found at i:27344024 original size:26 final size:26
Alignment explanation
Indices: 27343995--27344055 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
27343985 AATGATGAGA
*
27343995 TTTTTAAAAAT-TTTAAATGATAAAT
1 TTTTTAAAAATCTTTAAATGAGAAAT
*
27344020 TTTTTAAGAAATCTTTAAGTGAGAAAT
1 TTTTTAA-AAATCTTTAAATGAGAAAT
27344047 TTCTTTAAA
1 TT-TTTAAA
27344056 TTTGTTCCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 7 0.23
26 4 0.13
27 15 0.48
28 5 0.16
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (26 bp):
TTTTTAAAAATCTTTAAATGAGAAAT
Found at i:27351165 original size:22 final size:22
Alignment explanation
Indices: 27351100--27351165 Score: 53
Period size: 22 Copynumber: 3.0 Consensus size: 22
27351090 ATATTGTTAT
* * * *
27351100 ATTATTATAATTATTAATGAATT
1 ATTA-TATCATTAATAATGTATA
* *
27351123 ATTATATC-TTGAAAAAAGTATA
1 ATTATATCATT-AATAATGTATA
27351145 ATTATATCATTAATAATGTAT
1 ATTATATCATTAATAATGTAT
27351166 TATTCCCAAC
Statistics
Matches: 33, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
21 2 0.06
22 25 0.76
23 6 0.18
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (22 bp):
ATTATATCATTAATAATGTATA
Found at i:27351691 original size:15 final size:14
Alignment explanation
Indices: 27351665--27351704 Score: 62
Period size: 15 Copynumber: 2.8 Consensus size: 14
27351655 TTCGTTTATG
27351665 ATTTGTTTATTTAA
1 ATTTGTTTATTTAA
*
27351679 ATTTGTTTGATTTTA
1 ATTTGTTT-ATTTAA
27351694 ATTTGTTTATT
1 ATTTGTTTATT
27351705 ATTCATGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.68
Consensus pattern (14 bp):
ATTTGTTTATTTAA
Found at i:27351724 original size:23 final size:23
Alignment explanation
Indices: 27351698--27351762 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 23
27351688 ATTTTAATTT
*
27351698 GTTTATTATTCATGAATATATTC
1 GTTTATTATTTATGAATATATTC
27351721 GTTTATTTATATTTATGAATATATTC
1 GTTTA--T-TATTTATGAATATATTC
* *
27351747 ATTTAATATTTATGAA
1 GTTTATTATTTATGAA
27351763 CAAATTCATT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 15 0.42
25 1 0.03
26 20 0.56
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.54
Consensus pattern (23 bp):
GTTTATTATTTATGAATATATTC
Found at i:27351738 original size:26 final size:26
Alignment explanation
Indices: 27351694--27351779 Score: 88
Period size: 23 Copynumber: 3.3 Consensus size: 26
27351684 TTTGATTTTA
* *
27351694 ATTTGTTTATTATTCATGAATATATTC
1 ATTTATTTA-TATTTATGAATATATTC
*
27351721 GTTTATTTATATTTATGAATATATTC
1 ATTTATTTATATTTATGAATATATTC
* *
27351747 ATTTA---ATATTTATGAACAAATTC
1 ATTTATTTATATTTATGAATATATTC
27351770 ATTTAATTTA
1 ATTT-ATTTA
27351780 ATCGAACTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
23 20 0.41
24 1 0.02
26 20 0.41
27 8 0.16
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (26 bp):
ATTTATTTATATTTATGAATATATTC
Found at i:27351786 original size:23 final size:23
Alignment explanation
Indices: 27351725--27351786 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
27351715 ATATTCGTTT
* * *
27351725 ATTT-ATATTTATGAATATATTC
1 ATTTAATATTAATGAACAAATTC
*
27351747 ATTTAATATTTATGAACAAATTC
1 ATTTAATATTAATGAACAAATTC
27351770 ATTTAAT-TTAATCGAAC
1 ATTTAATATTAAT-GAAC
27351787 TGAATATGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
22 8 0.23
23 27 0.77
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.47
Consensus pattern (23 bp):
ATTTAATATTAATGAACAAATTC
Found at i:27351837 original size:15 final size:15
Alignment explanation
Indices: 27351817--27351848 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
27351807 ACATTCTATC
*
27351817 ATTTAAATAAATTAA
1 ATTTAAATAAATAAA
27351832 ATTTAAATAAATAAA
1 ATTTAAATAAATAAA
27351847 AT
1 AT
27351849 AATTTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATTTAAATAAATAAA
Found at i:27352398 original size:13 final size:13
Alignment explanation
Indices: 27352357--27352400 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
27352347 CATATAAAGA
27352357 TAATTTTTTATTT
1 TAATTTTTTATTT
**
27352370 TATAAATTTTACTTT
1 TA-ATTTTTTA-TTT
27352385 TAATTTTTTATTT
1 TAATTTTTTATTT
27352398 TAA
1 TAA
27352401 AATAAATGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 8 0.32
14 12 0.48
15 5 0.20
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (13 bp):
TAATTTTTTATTT
Found at i:27354976 original size:20 final size:21
Alignment explanation
Indices: 27354933--27354977 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
27354923 TGGCAGACAA
* *
27354933 TGAAAATTTATTGGTTGGCTT
1 TGAAAATTTATTGGTTGCCCT
*
27354954 TGAAAA-TTGTTGGTTGCCCT
1 TGAAAATTTATTGGTTGCCCT
27354974 TGAA
1 TGAA
27354978 CGCTTGTTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.42
Consensus pattern (21 bp):
TGAAAATTTATTGGTTGCCCT
Found at i:27355016 original size:41 final size:41
Alignment explanation
Indices: 27354892--27355100 Score: 188
Period size: 41 Copynumber: 5.1 Consensus size: 41
27354882 TTGGTTGCTT
* * * *
27354892 TTGAACACCTGTTGTCTGGATTTGAAAG-TATTGGCAGACA
1 TTGAACACTTGTTGGCTGGCTTTGAAAGATATTGGCAGACC
* * * * * * ** *
27354932 ATGAAAATTTATTGGTTGGCTTTGAAA-ATTGTTGGTTGCCC
1 TTGAACACTTGTTGGCTGGCTTTGAAAGA-TATTGGCAGACC
* * **
27354973 TTGAACGCTTGTTGGCTGGCTATGAAAGATCCTGGCAGACC
1 TTGAACACTTGTTGGCTGGCTTTGAAAGATATTGGCAGACC
* * *
27355014 TTGTACACTTGTTGGCTGGCTTTGAAAGTTATTGGCAGACA
1 TTGAACACTTGTTGGCTGGCTTTGAAAGATATTGGCAGACC
* * *
27355055 TTGAACACTTGTTAGTTGGCTTTGAAAGATGTTGGCAGACC
1 TTGAACACTTGTTGGCTGGCTTTGAAAGATATTGGCAGACC
27355096 TTGAA
1 TTGAA
27355101 AATTTATAAT
Statistics
Matches: 128, Mismatches: 38, Indels: 5
0.75 0.22 0.03
Matches are distributed among these distances:
40 19 0.15
41 108 0.84
42 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.34
Consensus pattern (41 bp):
TTGAACACTTGTTGGCTGGCTTTGAAAGATATTGGCAGACC
Found at i:27365367 original size:12 final size:13
Alignment explanation
Indices: 27365350--27365379 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
27365340 GATTTGTGAG
27365350 TTTTTAA-TTTTT
1 TTTTTAACTTTTT
27365362 TTTTTAACTTTTT
1 TTTTTAACTTTTT
27365375 TTTTT
1 TTTTT
27365380 TTACTCGTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTAACTTTTT
Found at i:27370802 original size:2 final size:2
Alignment explanation
Indices: 27370795--27370825 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
27370785 CTTTACCCAA
27370795 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27370826 GATTAAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27374335 original size:34 final size:34
Alignment explanation
Indices: 27374292--27374404 Score: 154
Period size: 34 Copynumber: 3.3 Consensus size: 34
27374282 TAATGTATTG
* * * *
27374292 AAATTCATTTTCAAAAAGCATTGCAATTATCTGG
1 AAATCCATTTTTAAAAAGCATTACAATTATCTGA
* * *
27374326 AAATACATTTTTGAAAAGTATTACAATTATCTGA
1 AAATCCATTTTTAAAAAGCATTACAATTATCTGA
*
27374360 AAATCCATTTTTAAAAAGCATTACAATTTTCTGA
1 AAATCCATTTTTAAAAAGCATTACAATTATCTGA
27374394 AAATCCATTTT
1 AAATCCATTTT
27374405 AAGAAGTAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 69 1.00
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (34 bp):
AAATCCATTTTTAAAAAGCATTACAATTATCTGA
Found at i:27375460 original size:66 final size:65
Alignment explanation
Indices: 27375338--27375461 Score: 167
Period size: 66 Copynumber: 1.9 Consensus size: 65
27375328 TATTTCACTA
* * * * * *
27375338 AAAAATGTCTTAAATAATTCTTTTTATTTTTTTAAAGGAGATTATTTAAGATATTTTTAAAACCC
1 AAAAATGCCTTAAATAATTCCTTTCATTTTTTTAAAGAAGATCATTTAAGACATTTTTAAAACCC
* *
27375403 AAAAATGCCTTAAATAATTCACTTTCATTTTTTTTAAGAAGATCATTTAAGGCATTTTT
1 AAAAATGCCTTAAATAATTC-CTTTCATTTTTTTAAAGAAGATCATTTAAGACATTTTT
27375462 GGTTAAAGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
65 19 0.38
66 31 0.62
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (65 bp):
AAAAATGCCTTAAATAATTCCTTTCATTTTTTTAAAGAAGATCATTTAAGACATTTTTAAAACCC
Found at i:27375763 original size:62 final size:62
Alignment explanation
Indices: 27375666--27375867 Score: 219
Period size: 63 Copynumber: 3.2 Consensus size: 62
27375656 TTATGAAAGG
* * * *
27375666 GATTATTTAAGGTCTTTTTTTGGTTAAAAAATACCTGAAATAATCT-TTTAAAAAAAATAAATGA
1 GATTATTTAA-GACATTTTTT-GTTAAAAAATACCTTAAATAATCTATTTAAAAAAAATAAA-AA
27375730 GATTATTTAAGACATTTTTTGTTAAAAAATACCTTAAATAATCTCATTT-AAAAAAATAAAAAA
1 GATTATTTAAGACATTTTTTGTTAAAAAATACCTTAAATAATCT-ATTTAAAAAAAAT-AAAAA
** ** *** * *
27375793 GATTATTTAAGGTATTTTTCATTCCGAAATGCCTTAAATAATCTATTTATAAAAATATAAAAA
1 GATTATTTAAGACATTTTTTGTTAAAAAATACCTTAAATAATCTATTTA-AAAAAAATAAAAA
27375856 GATTATTTAAGA
1 GATTATTTAAGA
27375868 TGTTTTCCAT
Statistics
Matches: 119, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
62 27 0.23
63 69 0.58
64 23 0.19
ACGTcount: A:0.46, C:0.07, G:0.08, T:0.39
Consensus pattern (62 bp):
GATTATTTAAGACATTTTTTGTTAAAAAATACCTTAAATAATCTATTTAAAAAAAATAAAAA
Found at i:27375886 original size:63 final size:63
Alignment explanation
Indices: 27375756--27375929 Score: 194
Period size: 63 Copynumber: 2.8 Consensus size: 63
27375746 TTTTGTTAAA
* * * * *
27375756 AAATACCTTAAATAATCTCATTTAAAAAAATA-AAAAAGATTATTTAAGGTATTTTTCATTCCG
1 AAATGCCTTAAATAATCT-ATTTATAAAAATATAAAAAGATTATTTAAGATATTTTCCATGCCG
*
27375819 AAATGCCTTAAATAATCTATTTATAAAAATATAAAAAGATTATTTAAGATGTTTTCCATGCAC-
1 AAATGCCTTAAATAATCTATTTATAAAAATATAAAAAGATTATTTAAGATATTTTCCATGC-CG
* * * *
27375882 AAATGCTTTAAATGATC-ATTTTATTAAAATAT-AAATGAATTATTTAAG
1 AAATGCCTTAAATAATCTA-TTTATAAAAATATAAAAAG-ATTATTTAAG
27375930 GCATAAGCAA
Statistics
Matches: 97, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
62 17 0.18
63 79 0.81
64 1 0.01
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.38
Consensus pattern (63 bp):
AAATGCCTTAAATAATCTATTTATAAAAATATAAAAAGATTATTTAAGATATTTTCCATGCCG
Found at i:27402391 original size:20 final size:20
Alignment explanation
Indices: 27402338--27402393 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
27402328 TTACCCTAAA
*
27402338 TTAAAAAGAAA-AAAATTAC
1 TTAATAAGAAATAAAATTAC
*
27402357 TTAATACATAAATAAAATTAC
1 TTAATA-AGAAATAAAATTAC
27402378 TT-ATGAAGAAATAAAA
1 TTAAT-AAGAAATAAAA
27402394 GATATATAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 5 0.16
20 15 0.48
21 11 0.35
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (20 bp):
TTAATAAGAAATAAAATTAC
Found at i:27404825 original size:25 final size:25
Alignment explanation
Indices: 27404791--27404853 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
27404781 GTGATCAGAT
* *
27404791 ACACCCTTCAGTAAACCACTT-AAAA
1 ACACCATTCAGCAAACCA-TTCAAAA
* *
27404816 ATATCATTCAGCAAACCATTCAAAA
1 ACACCATTCAGCAAACCATTCAAAA
27404841 ACACCATTCAGCA
1 ACACCATTCAGCA
27404854 TATGATTCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
24 2 0.06
25 29 0.94
ACGTcount: A:0.44, C:0.30, G:0.05, T:0.21
Consensus pattern (25 bp):
ACACCATTCAGCAAACCATTCAAAA
Found at i:27405474 original size:62 final size:64
Alignment explanation
Indices: 27405338--27405458 Score: 144
Period size: 62 Copynumber: 2.0 Consensus size: 64
27405328 TTTTCAATAG
* *
27405338 AAAAT-CGTCTTTAATAATTATGTACAAAAATTAAAAGAAATTAATGAAGGTGTTTGTTCTAAA
1 AAAATACGTCTTCAATAATTATGTACAAAAATTAAAAGAAATTAATGAAGGTATTTGTTCTAAA
** * *
27405401 AAAATAC--CTTCAATAATTATGTACGTAAATTAGAAGAGAATTAGTGAAGG-ATTT-TTCT
1 AAAATACGTCTTCAATAATTATGTACAAAAATTAAAAGA-AATTAATGAAGGTATTTGTTCT
27405459 GGAATAAACG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
61 4 0.08
62 29 0.58
63 16 0.32
64 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (64 bp):
AAAATACGTCTTCAATAATTATGTACAAAAATTAAAAGAAATTAATGAAGGTATTTGTTCTAAA
Found at i:27405845 original size:185 final size:185
Alignment explanation
Indices: 27405390--27406339 Score: 1139
Period size: 185 Copynumber: 5.1 Consensus size: 185
27405380 AATGAAGGTG
27405390 TTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAAATTAGAAGAGAATTAGTGAAGG-ATT
1 TTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAAATTAGAAGA-AATTAGTGAAGGCATT
** * * * * * *
27405454 TTTCTGGAATAAACGTCTTCACT-AACCTCTTAAAATTTGTA-TTATAAAAAATTGAAGGCAGTT
65 TTTCTAAAATAAATGCCTTCACTAAACATCTTAAAATTTG-AGTTGTGAAAAATTGAAGGCATTT
* * *
27405517 TTCATTAGAAGACGCCATTAATAATCTCAAAAATTTTAAAAGGAAAA-TATTGAAA-GCG
129 TTCACTAGAAGACGCCTTTAATAATCTCAAAAATTTTAAAA--AAAATTATT-AAAGGCA
* *
27405575 TTTGTTCTAAAAAAACT-CCTTCAATAATTATATACATAAATTAGAAGGAAA-TAGTGAAGGCAT
1 TTTGTTCTAAAAAAA-TACCTTCAATAATTATGTACGTAAATTAGAA-GAAATTAGTGAAGGCAT
* * * *
27405638 TTTTCTAGAATAAATGCCTTCACTAAACGTTTTAAAATTTGAGTTGTGAAAAATTAAAGGCATTT
64 TTTTCTAAAATAAATGCCTTCACTAAACATCTTAAAATTTGAGTTGTGAAAAATTGAAGGCATTT
* *
27405703 TTCACTAAAAGATGCCTTTAATAATCTCAAAAATTTTAAGAAAAAATTATTAAAGGCA
129 TTCACTAGAAGACGCCTTTAATAATCTCAAAAATTTTAA-AAAAAATTATTAAAGGCA
* * * *
27405761 TTTATTCTCAAAAAATGCCTTCAATAATTATGTATGT-AATTAGAAGAAATTAGTGAAGGCATTT
1 TTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAAATTAGAAGAAATTAGTGAAGGCATTT
* * * *
27405825 TTCTAAAATAAATGCCTTCACTAAACATCTTAAAATTTGAGTTGTAAAAAATTAAAGACGTTTTT
66 TTCTAAAATAAATGCCTTCACTAAACATCTTAAAATTTGAGTTGTGAAAAATTGAAGGCATTTTT
* * *
27405890 TACTGGAAGACGCCTTTAATAATCTCAAAAATTTTTAAAAAAAATTATTGAAGGCA
131 CACTAGAAGACGCCTTTAATAATCTCAAAAA-TTTTAAAAAAAATTATTAAAGGCA
* * *
27405946 TTTGTTCT-AAAAAATACCTTCAATTATTATGTACGTAAATTAGAA-AGAATTAGTGAATGTATT
1 TTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAAATTAGAAGA-AATTAGTGAAGGCATT
** * * * *
27406009 TTTCTAAAATAAACACTTTCACTAACCATCTTAAAAATTGAGTTGTGAAAAATTGAAGGTATTTT
65 TTTCTAAAATAAATGCCTTCACTAAACATCTTAAAATTTGAGTTGTGAAAAATTGAAGGCATTTT
* * * ** * *
27406074 TTATTGGAAGACGTTTTTAATAATCTCAAAAATTTTAAGAGAAAATTATTAAAGGCG
130 TCACTAGAAGACGCCTTTAATAATCTCAAAAATTTTAA-AAAAAATTATTAAAGGCA
* * * * *
27406131 TTTGTTTTAAAAAAATTA-CTTCAATTATTATGTACATAAATTAGAAGAAATTAGTGAAGACTTT
1 TTTGTTCTAAAAAAA-TACCTTCAATAATTATGTACGTAAATTAGAAGAAATTAGTGAAGGCATT
* * * * * * *
27406195 TTTCTAAAATAAATACCTTCACTAACCGTCTTAAAATTTGAATTGTGAAACACTGAAGGCGTTTT
65 TTTCTAAAATAAATGCCTTCACTAAACATCTTAAAATTTGAGTTGTGAAAAATTGAAGGCATTTT
* * *
27406260 TCACTAGAAGACACCTTTAATAATCTCAAAAATTTTTAAAAAAAATTATTGAACGCA
130 TCACTAGAAGACGCCTTTAATAATCTCAAAAA-TTTTAAAAAAAATTATTAAAGGCA
* *
27406317 TTTATTCTTAAAAAATACCTTCA
1 TTTGTTCTAAAAAAATACCTTCA
27406340 TTAACTGTCC
Statistics
Matches: 664, Mismatches: 82, Indels: 37
0.85 0.10 0.05
Matches are distributed among these distances:
184 45 0.07
185 338 0.51
186 270 0.41
187 11 0.02
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (185 bp):
TTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAAATTAGAAGAAATTAGTGAAGGCATTT
TTCTAAAATAAATGCCTTCACTAAACATCTTAAAATTTGAGTTGTGAAAAATTGAAGGCATTTTT
CACTAGAAGACGCCTTTAATAATCTCAAAAATTTTAAAAAAAATTATTAAAGGCA
Found at i:27406229 original size:371 final size:368
Alignment explanation
Indices: 27405375--27406339 Score: 1206
Period size: 371 Copynumber: 2.6 Consensus size: 368
27405365 AAATTAAAAG
* * *
27405375 AAATTAATGAAGGTGTTTGTTCTAAAAAAA-TACCTTCAATAATTATGTACGTAAATTAGAAGAG
1 AAATTATTAAAGGCGTTTGTTCTAAAAAAATTA-CTTCAATAATTATGTACGTAAATTAGAAGA-
** * * *
27405439 AATTAGTGAAGGA-TTTTTCTGGAATAAACGTCTTCACTAACCTCTTAAAATTTGTATTATAAAA
64 AATTAGTGAA-GACTTTTTCTAAAATAAATGCCTTCACTAACCTCTTAAAATTTG-ATTGTAAAA
* *
27405503 AATTGAAGGCAG-TTTTCATTAGAAGACGCCATTAATAATCTCAAAAA-TTTTAAAAGGAAAA-T
127 AATTGAAGGC-GTTTTTCACTAGAAGACGCCTTTAATAATCTCAAAAATTTTTAAAA--AAAATT
* *
27405565 ATTGAAAGCGTTTGTTCTAAAAAA-ACTCCTTCAATAATTATATACATAAATTAGAAGGAAATAG
189 ATTGAAAGCATTTGTTCTAAAAAATA--CCTTCAATAATTATATACATAAATTAGAAAGAAATAG
* ** * * *
27405629 TGAAGGCATTTTTCTAGAATAAATGCCTTCACTAAACGTTTTAAAATTTGAGTTGTGAAAAATTA
252 TGAAGGCATTTTTCTAAAATAAACACCTTCACTAAACATCTTAAAAATTGAGTTGTGAAAAATTA
*
27405694 AAGGCATTTTTCACTAAAAGATGCCTTTAATAATCTCAAAAATTTTAAGAAA
317 AAGGCATTTTTCACTAAAAGACGCCTTTAATAATCTCAAAAATTTTAAGAAA
* * * ** *
27405746 AAATTATTAAAGGCATTTATTCTCAAAAAATGCCTTCAATAATTATGTATGT-AATTAGAAGAAA
1 AAATTATTAAAGGCGTTTGTTCTAAAAAAATTACTTCAATAATTATGTACGTAAATTAGAAGAAA
* *
27405810 TTAGTGAAGGCATTTTTCTAAAATAAATGCCTTCACTAAACATCTTAAAATTTGAGTTGTAAAAA
66 TTAGTGAAGAC-TTTTTCTAAAATAAATGCCTTCACT-AACCTCTTAAAATTTGA-TTGTAAAAA
* * * *
27405875 ATTAAAGACGTTTTTTACTGGAAGACGCCTTTAATAATCTCAAAAATTTTTAAAAAAAATTATTG
128 ATTGAAGGCGTTTTTCACTAGAAGACGCCTTTAATAATCTCAAAAATTTTTAAAAAAAATTATTG
* * * * * *
27405940 AAGGCATTTGTTCTAAAAAATACCTTCAATTATTATGTACGTAAATTAGAAAGAATTAGTGAATG
193 AAAGCATTTGTTCTAAAAAATACCTTCAATAATTATATACATAAATTAGAAAGAAATAGTGAAGG
* * * * *
27406005 TATTTTTCTAAAATAAACACTTTCACTAACCATCTTAAAAATTGAGTTGTGAAAAATTGAAGGTA
258 CATTTTTCTAAAATAAACACCTTCACTAAACATCTTAAAAATTGAGTTGTGAAAAATTAAAGGCA
* * ** ** *
27406070 TTTTTTATTGGAAGACGTTTTTAATAATCTCAAAAATTTTAAGAGA
323 TTTTTCACTAAAAGACGCCTTTAATAATCTCAAAAATTTTAAGAAA
* * *
27406116 AAATTATTAAAGGCGTTTGTTTTAAAAAAATTACTTCAATTATTATGTACATAAATTAGAAGAAA
1 AAATTATTAAAGGCGTTTGTTCTAAAAAAATTACTTCAATAATTATGTACGTAAATTAGAAGAAA
* * *
27406181 TTAGTGAAGACTTTTTTCTAAAATAAATACCTTCACTAACCGTCTTAAAATTTGAATTGTGAAAC
66 TTAGTGAAGAC-TTTTTCTAAAATAAATGCCTTCACTAACC-TCTTAAAATTTG-ATTGTAAAAA
* *
27406246 ACTGAAGGCGTTTTTCACTAGAAGACACCTTTAATAATCTCAAAAATTTTTAAAAAAAATTATTG
128 ATTGAAGGCGTTTTTCACTAGAAGACGCCTTTAATAATCTCAAAAATTTTTAAAAAAAATTATTG
* *
27406311 AACGCATTTATTCTTAAAAAATACCTTCA
193 AAAGCATTTGTTC-TAAAAAATACCTTCA
27406340 TTAACTGTCC
Statistics
Matches: 509, Mismatches: 72, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
368 1 0.00
369 10 0.02
370 212 0.42
371 261 0.51
372 25 0.05
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (368 bp):
AAATTATTAAAGGCGTTTGTTCTAAAAAAATTACTTCAATAATTATGTACGTAAATTAGAAGAAA
TTAGTGAAGACTTTTTCTAAAATAAATGCCTTCACTAACCTCTTAAAATTTGATTGTAAAAAATT
GAAGGCGTTTTTCACTAGAAGACGCCTTTAATAATCTCAAAAATTTTTAAAAAAAATTATTGAAA
GCATTTGTTCTAAAAAATACCTTCAATAATTATATACATAAATTAGAAAGAAATAGTGAAGGCAT
TTTTCTAAAATAAACACCTTCACTAAACATCTTAAAAATTGAGTTGTGAAAAATTAAAGGCATTT
TTCACTAAAAGACGCCTTTAATAATCTCAAAAATTTTAAGAAA
Found at i:27407762 original size:21 final size:21
Alignment explanation
Indices: 27407738--27407780 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
27407728 TGTTTTTAAC
*
27407738 ATTCATAACCAATATTTTCAT
1 ATTCATAACCAACATTTTCAT
*
27407759 ATTCATAACTAACATTTTCAT
1 ATTCATAACCAACATTTTCAT
27407780 A
1 A
27407781 ATCTTTCTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTCATAACCAACATTTTCAT
Found at i:27414341 original size:33 final size:34
Alignment explanation
Indices: 27414301--27414376 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 34
27414291 TACAAATATT
27414301 GCTAATATAGTGGCATTTTCCAAATACAAATGCC
1 GCTAATATAGTGGCATTTTCCAAATACAAATGCC
* *
27414335 -CTAATATAGTGGCATTTTTCAAATGCAAATGCC
1 GCTAATATAGTGGCATTTTCCAAATACAAATGCC
27414368 GCTAATATA
1 GCTAATATA
27414377 ACGACATTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
33 31 0.79
34 8 0.21
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (34 bp):
GCTAATATAGTGGCATTTTCCAAATACAAATGCC
Found at i:27414385 original size:34 final size:33
Alignment explanation
Indices: 27414302--27414420 Score: 130
Period size: 34 Copynumber: 3.5 Consensus size: 33
27414292 ACAAATATTG
** *
27414302 CTAATATAGTGGCATTTTCCAAATACAAATGCC
1 CTAATATAACGGCATTTTTCAAATACAAATGCC
** *
27414335 CTAATATAGTGGCATTTTTCAAATGCAAATGCC
1 CTAATATAACGGCATTTTTCAAATACAAATGCC
* * *
27414368 GCTAATATAACGACATTTTTCATATATAAATGCC
1 -CTAATATAACGGCATTTTTCAAATACAAATGCC
*
27414402 ACTAATGTAACGGCATTTT
1 -CTAATATAACGGCATTTT
27414421 ATAGAAAACG
Statistics
Matches: 74, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
33 31 0.42
34 43 0.58
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (33 bp):
CTAATATAACGGCATTTTTCAAATACAAATGCC
Found at i:27415518 original size:20 final size:20
Alignment explanation
Indices: 27415490--27415530 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
27415480 TTTTTAAAAA
*
27415490 AATGTGATTAAATTAAATTT
1 AATGGGATTAAATTAAATTT
* *
27415510 AATGGGATTATATTTAATTT
1 AATGGGATTAAATTAAATTT
27415530 A
1 A
27415531 TATATATAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.46
Consensus pattern (20 bp):
AATGGGATTAAATTAAATTT
Found at i:27415576 original size:28 final size:26
Alignment explanation
Indices: 27415528--27415599 Score: 87
Period size: 28 Copynumber: 2.8 Consensus size: 26
27415518 TATATTTAAT
27415528 TTATATATATAAATTAAAAATAAAAA
1 TTATATATATAAATTAAAAATAAAAA
* *
27415554 TTATATATGTAAAACTTATAAATAAAAA
1 TTATATATAT-AAA-TTAAAAATAAAAA
27415582 TTATATA-A-AAA-TAAAAAT
1 TTATATATATAAATTAAAAAT
27415600 TAAGTTTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
23 6 0.15
25 3 0.08
26 9 0.22
27 3 0.08
28 19 0.47
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (26 bp):
TTATATATATAAATTAAAAATAAAAA
Found at i:27415585 original size:13 final size:13
Alignment explanation
Indices: 27415528--27415586 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
27415518 TATATTTAAT
* *
27415528 TTATATATATAAA
1 TTATAAATAAAAA
*
27415541 TTAAAAATAAAAA
1 TTATAAATAAAAA
* *
27415554 TTATATATGTAAAAC
1 TTATA-A-ATAAAAA
27415569 TTATAAATAAAAA
1 TTATAAATAAAAA
27415582 TTATA
1 TTATA
27415587 TAAAAATAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
13 24 0.67
14 2 0.06
15 10 0.28
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (13 bp):
TTATAAATAAAAA
Found at i:27416277 original size:32 final size:31
Alignment explanation
Indices: 27416219--27416280 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
27416209 ATCAACTTTT
*
27416219 ATTATGTGAAATTTTTTTATTGTTTAAACAG
1 ATTATGTGAAATTTTTTTATGGTTTAAACAG
27416250 ATTATGTGAAA-TTTTTTATGGCTTTTAAACA
1 ATTATGTGAAATTTTTTTATGG--TTTAAACA
27416281 AATCATAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 9 0.32
31 11 0.39
32 8 0.29
ACGTcount: A:0.32, C:0.05, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTATGTGAAATTTTTTTATGGTTTAAACAG
Found at i:27417783 original size:13 final size:13
Alignment explanation
Indices: 27417767--27417791 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27417757 AACAACATTC
27417767 TCATACAATAAAA
1 TCATACAATAAAA
27417780 TCATACAATAAA
1 TCATACAATAAA
27417792 CAATACTCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (13 bp):
TCATACAATAAAA
Found at i:27420995 original size:12 final size:12
Alignment explanation
Indices: 27420969--27421010 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
27420959 AGTATATATA
27420969 TAATTATTT-TT
1 TAATTATTTATT
27420980 TAATTATTTATT
1 TAATTATTTATT
27420992 TAATT-TTATATT
1 TAATTATT-TATT
27421004 TACATTA
1 TA-ATTA
27421011 AAAATAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 11 0.41
12 13 0.48
13 3 0.11
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (12 bp):
TAATTATTTATT
Found at i:27421962 original size:195 final size:195
Alignment explanation
Indices: 27421728--27422121 Score: 788
Period size: 195 Copynumber: 2.0 Consensus size: 195
27421718 ATGATGTAAC
27421728 ACTTAGATAGATGCCTAATATAAGTATTTATATTTATATTGGTTAATAATGACTTAACTATATAT
1 ACTTAGATAGATGCCTAATATAAGTATTTATATTTATATTGGTTAATAATGACTTAACTATATAT
27421793 TAATTTTGTTTAATCTTCATGATTTGTTATATTTAAGGGTTCAAGTCAGACTATATATCATAGCA
66 TAATTTTGTTTAATCTTCATGATTTGTTATATTTAAGGGTTCAAGTCAGACTATATATCATAGCA
27421858 ATCCATCATTAGGTACGCAATATTCACAAAGTAATACATAAAGTGCAATGTTGAATCTTACTCAT
131 ATCCATCATTAGGTACGCAATATTCACAAAGTAATACATAAAGTGCAATGTTGAATCTTACTCAT
27421923 ACTTAGATAGATGCCTAATATAAGTATTTATATTTATATTGGTTAATAATGACTTAACTATATAT
1 ACTTAGATAGATGCCTAATATAAGTATTTATATTTATATTGGTTAATAATGACTTAACTATATAT
27421988 TAATTTTGTTTAATCTTCATGATTTGTTATATTTAAGGGTTCAAGTCAGACTATATATCATAGCA
66 TAATTTTGTTTAATCTTCATGATTTGTTATATTTAAGGGTTCAAGTCAGACTATATATCATAGCA
27422053 ATCCATCATTAGGTACGCAATATTCACAAAGTAATACATAAAGTGCAATGTTGAATCTTACTCAT
131 ATCCATCATTAGGTACGCAATATTCACAAAGTAATACATAAAGTGCAATGTTGAATCTTACTCAT
27422118 ACTT
1 ACTT
27422122 CAATTTCTAA
Statistics
Matches: 199, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
195 199 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (195 bp):
ACTTAGATAGATGCCTAATATAAGTATTTATATTTATATTGGTTAATAATGACTTAACTATATAT
TAATTTTGTTTAATCTTCATGATTTGTTATATTTAAGGGTTCAAGTCAGACTATATATCATAGCA
ATCCATCATTAGGTACGCAATATTCACAAAGTAATACATAAAGTGCAATGTTGAATCTTACTCAT
Found at i:27422359 original size:18 final size:19
Alignment explanation
Indices: 27422331--27422371 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
27422321 ATAGTGTCTA
27422331 GAAGTTTTGCATAATGAAT
1 GAAGTTTTGCATAATGAAT
*
27422350 GAAG-TTTGCATAGTGAAT
1 GAAGTTTTGCATAATGAAT
27422368 GAAG
1 GAAG
27422372 CTTATTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.37, C:0.05, G:0.27, T:0.32
Consensus pattern (19 bp):
GAAGTTTTGCATAATGAAT
Found at i:27424844 original size:25 final size:27
Alignment explanation
Indices: 27424793--27424858 Score: 91
Period size: 25 Copynumber: 2.5 Consensus size: 27
27424783 GAGGTTTTTT
*
27424793 AAGAATATTGTCATCTATAATTTAAAA
1 AAGAATATTTTCATCTATAATTTAAAA
27424820 AAGAATATTTTCAT-T-TAATTTAAAA
1 AAGAATATTTTCATCTATAATTTAAAA
* *
27424845 AATAATACTTTCAT
1 AAGAATATTTTCAT
27424859 ATATTTCAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 22 0.61
26 1 0.03
27 13 0.36
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.41
Consensus pattern (27 bp):
AAGAATATTTTCATCTATAATTTAAAA
Found at i:27424869 original size:25 final size:25
Alignment explanation
Indices: 27424808--27424869 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
27424798 TATTGTCATC
*
27424808 TATAATTTAAAAAAGAATATTTTCA
1 TATAATTTAAAAAAGAATACTTTCA
* *
27424833 TTTAATTTAAAAAATAATACTTTCA
1 TATAATTTAAAAAAGAATACTTTCA
*
27424858 TAT-ATTTCAAAA
1 TATAATTTAAAAA
27424870 TTATCAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 8 0.25
25 24 0.75
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (25 bp):
TATAATTTAAAAAAGAATACTTTCA
Found at i:27429250 original size:3 final size:3
Alignment explanation
Indices: 27429242--27429269 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
27429232 ATTTTCTACT
27429242 TGG TGG TGG TGG TGG TGG TGG TGG TGG T
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG T
27429270 CGGGGGGGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.64, T:0.36
Consensus pattern (3 bp):
TGG
Found at i:27438721 original size:2 final size:2
Alignment explanation
Indices: 27438714--27438746 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
27438704 GGGACTAATA
27438714 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27438747 CACACACATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27456186 original size:21 final size:21
Alignment explanation
Indices: 27456162--27456204 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
27456152 GTTTAGAGGA
*
27456162 TGAAAAT-TATTTTTATTTATT
1 TGAAAATATATATTT-TTTATT
27456183 TGAAAATATATATTTTTTATT
1 TGAAAATATATATTTTTTATT
27456204 T
1 T
27456205 TTTATTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (21 bp):
TGAAAATATATATTTTTTATT
Found at i:27456271 original size:17 final size:15
Alignment explanation
Indices: 27456248--27456292 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 15
27456238 TTTTTCTCTC
27456248 TTTTTTTTTAGAACT
1 TTTTTTTTTAGAACT
*
27456263 TCATTTTTTTTTGAACT
1 T--TTTTTTTTAGAACT
*
27456280 TTTTCTTTTAGAA
1 TTTTTTTTTAGAA
27456293 ATAAAAGTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 11 0.44
17 14 0.56
ACGTcount: A:0.20, C:0.09, G:0.07, T:0.64
Consensus pattern (15 bp):
TTTTTTTTTAGAACT
Found at i:27457274 original size:3 final size:3
Alignment explanation
Indices: 27457257--27457323 Score: 82
Period size: 3 Copynumber: 22.7 Consensus size: 3
27457247 AAAAACCAAA
* * *
27457257 AAT AAA AAT -AT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
27457304 AAT AAT AAT GAT AAC AAT AA
1 AAT AAT AAT AAT AAT AAT AA
27457324 AACTATTTAA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
2 2 0.04
3 51 0.96
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:27457383 original size:26 final size:26
Alignment explanation
Indices: 27457354--27457445 Score: 96
Period size: 26 Copynumber: 3.5 Consensus size: 26
27457344 ACACCGATGG
*
27457354 GCCTAATTGGGCCTAGACGTCAATAA
1 GCCTAATTAGGCCTAGACGTCAATAA
* *
27457380 GCCTAATTAGGCCTAGATGTCAATGA
1 GCCTAATTAGGCCTAGACGTCAATAA
* * *
27457406 GCCTAATAAGG-CTCAGACGTTGATTAA
1 GCCTAATTAGGCCT-AGACG-TCAATAA
*
27457433 ACCTAATTAGGCC
1 GCCTAATTAGGCC
27457446 CGAACACAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
25 2 0.04
26 37 0.70
27 13 0.25
28 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (26 bp):
GCCTAATTAGGCCTAGACGTCAATAA
Found at i:27457759 original size:89 final size:90
Alignment explanation
Indices: 27457648--27457948 Score: 295
Period size: 89 Copynumber: 3.4 Consensus size: 90
27457638 AATGAAAGTC
* * * ** * *
27457648 AAAAGTAACTGATCG-GGATAAAATCATGAATCATGTGATCGGGATAAAATCACGAGTCAAAGTA
1 AAAAATAAGTGATCGAGGATAAAACCATGAATCATGTGATCAAGATGAAATCACGAGTCAAAATA
*
27457712 AAGCAACTAGGACCAAGTCGAGGTA
66 AAGCAACCAGGACCAAGTCGAGGTA
* * * * * * *
27457737 AAAAATAAATGATCGA-GATAAAACCATGAATCATATGACCACGATGAAACCATGAATCAAAATA
1 AAAAATAAGTGATCGAGGATAAAACCATGAATCATGTGATCAAGATGAAATCACGAGTCAAAATA
* * *
27457801 AAGCAACCAAGATCAAGTCGAGGTC
66 AAGCAACCAGGACCAAGTCGAGGTA
* * * * * * *
27457826 GAAAATAAGTTAT-TAGGCTGAAACCATGAATCATGTGATCAAGACGAAATCACAAGTCAAAATA
1 AAAAATAAGTGATCGAGGATAAAACCATGAATCATGTGATCAAGATGAAATCACGAGTCAAAATA
*** * *
27457890 AAATGACCAGGACCAAGTCAAAGTA
66 AAGCAACCAGGACCAAGTCGAGGTA
*
27457915 AAAAATAAGTGATC-AGGATGAAACCATGAATCAT
1 AAAAATAAGTGATCGAGGATAAAACCATGAATCAT
27457949 ATGACCTGGA
Statistics
Matches: 168, Mismatches: 41, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
88 1 0.01
89 167 0.99
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19
Consensus pattern (90 bp):
AAAAATAAGTGATCGAGGATAAAACCATGAATCATGTGATCAAGATGAAATCACGAGTCAAAATA
AAGCAACCAGGACCAAGTCGAGGTA
Found at i:27457961 original size:89 final size:89
Alignment explanation
Indices: 27457603--27457986 Score: 272
Period size: 89 Copynumber: 4.3 Consensus size: 89
27457593 GTGATCGGAG
* * * * * * * * *
27457603 CGAAATCACAAGTTAAGATGAAGTGACCAGGATCGAA-TGAAAGTCAAAAGTAACTGATCGGGAT
1 CGAAATCACAAGTCAAAATAAAGTGACCAGGA-CCAAGTCAAAGTAAAAAATAAGTGATCAGGAT
* * * *
27457667 AAAATCATGAATCATGTGATCGGGA
65 AAAACCATGAATCATATGACCAGGA
** * * ** * * * *
27457692 TAAAATCACGAGTCAAAGTAAAGCAACTAGGACCAAGTCGAGGTAAAAAATAAATGATC-GAGAT
1 CGAAATCACAAGTCAAAATAAAGTGACCAGGACCAAGTCAAAGTAAAAAATAAGTGATCAG-GAT
*
27457756 AAAACCATGAATCATATGACCACGA
65 AAAACCATGAATCATATGACCAGGA
* * * ** * * * * ** * * *
27457781 TGAAACCATGAA-TCAAAATAAAGCAACCAAGATCAAGTCGAGGTCGAAAATAAGTTATTAGGCT
1 CGAAATCA-CAAGTCAAAATAAAGTGACCAGGACCAAGTCAAAGTAAAAAATAAGTGATCAGGAT
* * * *
27457845 GAAACCATGAATCATGTGATCAAGA
65 AAAACCATGAATCATATGACCAGGA
* *
27457870 CGAAATCACAAGTCAAAATAAAATGACCAGGACCAAGTCAAAGTAAAAAATAAGTGATCAGGATG
1 CGAAATCACAAGTCAAAATAAAGTGACCAGGACCAAGTCAAAGTAAAAAATAAGTGATCAGGATA
*
27457935 AAACCATGAATCATATGACCTGGA
66 AAACCATGAATCATATGACCAGGA
** *
27457959 CG-AATCCACGTGTCAAAATAAAATGACC
1 CGAAAT-CACAAGTCAAAATAAAGTGACC
27457987 TAGACTGAGT
Statistics
Matches: 228, Mismatches: 61, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
88 9 0.04
89 217 0.95
90 2 0.01
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.18
Consensus pattern (89 bp):
CGAAATCACAAGTCAAAATAAAGTGACCAGGACCAAGTCAAAGTAAAAAATAAGTGATCAGGATA
AAACCATGAATCATATGACCAGGA
Found at i:27458009 original size:89 final size:89
Alignment explanation
Indices: 27457720--27458017 Score: 262
Period size: 89 Copynumber: 3.3 Consensus size: 89
27457710 TAAAGCAACT
* * * * * *
27457720 AGGACCAAGTCGAGGTAAAAAATAAATGATC-GAGATAAAACCATGAATCATATGACCACGATGA
1 AGGACCAAGTCGAAGTAGAAAATAAGTGATCAG-GATGAAACCATGAATCATATGACCAAGACGA
* * ***
27457784 AACCATGAA-TCAAAATAAAGCAACC
65 AATCA-CAAGTCAAAATAAAATGACC
* * * * * * * * *
27457809 AAGATCAAGTCGAGGTCGAAAATAAGTTATTAGGCTGAAACCATGAATCATGTGATCAAGACGAA
1 AGGACCAAGTCGAAGTAGAAAATAAGTGATCAGGATGAAACCATGAATCATATGACCAAGACGAA
27457874 ATCACAAGTCAAAATAAAATGACC
66 ATCACAAGTCAAAATAAAATGACC
* * **
27457898 AGGACCAAGTCAAAGTAAAAAATAAGTGATCAGGATGAAACCATGAATCATATGACCTGGACG-A
1 AGGACCAAGTCGAAGTAGAAAATAAGTGATCAGGATGAAACCATGAATCATATGACCAAGACGAA
**
27457962 ATCCACGTGTCAAAATAAAATGACC
66 AT-CACAAGTCAAAATAAAATGACC
** * *
27457987 TA-GACTGAGTCGATGTTGAAAATAAGTGATC
1 -AGGACCAAGTCGAAGTAGAAAATAAGTGATC
27458018 GAGACAAAAT
Statistics
Matches: 166, Mismatches: 39, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
88 5 0.03
89 159 0.96
90 2 0.01
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.19
Consensus pattern (89 bp):
AGGACCAAGTCGAAGTAGAAAATAAGTGATCAGGATGAAACCATGAATCATATGACCAAGACGAA
ATCACAAGTCAAAATAAAATGACC
Found at i:27459073 original size:17 final size:15
Alignment explanation
Indices: 27459041--27459078 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
27459031 ACTTAAACTC
27459041 TTTTTTTTTGTTTTA
1 TTTTTTTTTGTTTTA
*
27459056 TTTTTGTTT-TTTTA
1 TTTTTTTTTGTTTTA
27459070 TTATTTTTT
1 TT-TTTTTT
27459079 ATATTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.08, C:0.00, G:0.05, T:0.87
Consensus pattern (15 bp):
TTTTTTTTTGTTTTA
Found at i:27469161 original size:21 final size:21
Alignment explanation
Indices: 27469137--27469177 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
27469127 TTAGAGGATA
*
27469137 AAAAT-TATTTTTATTTATTTG
1 AAAATATATATTT-TTTATTTG
27469158 AAAATATATATTTTTTATTT
1 AAAATATATATTTTTTATTT
27469178 TTTATTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (21 bp):
AAAATATATATTTTTTATTTG
Found at i:27469378 original size:14 final size:13
Alignment explanation
Indices: 27469297--27469387 Score: 53
Period size: 13 Copynumber: 6.7 Consensus size: 13
27469287 TCTTTTTTTT
27469297 AAAA-AAAAAAT-
1 AAAACAAAAAATA
*
27469308 AAACCAAAAAATA
1 AAAACAAAAAATA
*
27469321 ATAACAAAAAA-A
1 AAAACAAAAAATA
*
27469333 AAGTTAAAAATAAAATA
1 AA---AACAA-AAAATA
*
27469350 AAATAAAATAAAATA
1 AAA-ACAA-AAAATA
*
27469365 GAAATCAAAAAATA
1 -AAAACAAAAAATA
27469379 AAAACAAAA
1 AAAACAAAA
27469388 TGAAAAAAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 16
0.72 0.09 0.18
Matches are distributed among these distances:
11 3 0.05
12 9 0.14
13 17 0.27
14 7 0.11
15 17 0.27
16 7 0.11
17 3 0.05
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.13
Consensus pattern (13 bp):
AAAACAAAAAATA
Found at i:27469381 original size:5 final size:5
Alignment explanation
Indices: 27469339--27469374 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
27469329 AAAAAAGTTA
27469339 AAAAT AAAAT AAAAT AAAAT AAAAT AGAAAT CAAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT A-AAAT -AAAA
27469375 AATAAAAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 21 0.72
6 7 0.24
7 1 0.03
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:27470239 original size:16 final size:16
Alignment explanation
Indices: 27470220--27470278 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
27470210 AAAAAAAAAC
27470220 AAAATAATAAAAACAA
1 AAAATAATAAAAACAA
*
27470236 AAAATAATAAATAA-TA
1 AAAATAATAAA-AACAA
*
27470252 AAAATAATAATAACAA
1 AAAATAATAAAAACAA
*
27470268 TATAATAATAA
1 -AAAATAATAA
27470279 TAATAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
15 2 0.06
16 23 0.64
17 11 0.31
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAATAATAAAAACAA
Found at i:27470244 original size:3 final size:3
Alignment explanation
Indices: 27470238--27470299 Score: 90
Period size: 3 Copynumber: 20.7 Consensus size: 3
27470228 AAAAACAAAA
* *
27470238 AAT AAT AAAT AAT AAA AAT AAT AAT AAC AAT -AT AAT AAT AAT AAT
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
27470283 AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AA
27470300 AAAAATTATT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
2 2 0.04
3 48 0.91
4 3 0.06
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:27470244 original size:19 final size:18
Alignment explanation
Indices: 27470209--27470304 Score: 72
Period size: 18 Copynumber: 5.4 Consensus size: 18
27470199 CAAAAAAGAG
*
27470209 AAAAAAAAAACAAAATAAT
1 AAAAAAAAAA-ATAATAAT
27470228 AAAAACAAAAAATAAT-A-
1 AAAAA-AAAAAATAATAAT
* *
27470245 AATAATAAAAATAATAAT
1 AAAAAAAAAAATAATAAT
* * *
27470263 -AACAATATAATAATAAT
1 AAAAAAAAAAATAATAAT
* * *
27470280 AATAATAATAATAATAAT
1 AAAAAAAAAAATAATAAT
27470298 AAAAAAA
1 AAAAAAA
27470305 TTATTTAGGA
Statistics
Matches: 59, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
16 9 0.15
17 17 0.29
18 19 0.32
19 9 0.15
20 5 0.08
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAAAAAAAAATAATAAT
Found at i:27470258 original size:9 final size:9
Alignment explanation
Indices: 27470220--27470302 Score: 75
Period size: 9 Copynumber: 9.4 Consensus size: 9
27470210 AAAAAAAAAC
27470220 AAAATAATA
1 AAAATAATA
*
27470229 AAAA-CA-A
1 AAAATAATA
27470236 AAAATAATA
1 AAAATAATA
27470245 AATAATAA-A
1 AA-AATAATA
27470254 AATAATAATA
1 AA-AATAATA
*
27470264 ACAAT-ATA
1 AAAATAATA
*
27470272 ATAATAATA
1 AAAATAATA
*
27470281 ATAATAATA
1 AAAATAATA
*
27470290 ATAATAATA
1 AAAATAATA
27470299 AAAA
1 AAAA
27470303 AATTATTTAG
Statistics
Matches: 64, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
7 5 0.08
8 9 0.14
9 43 0.67
10 7 0.11
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (9 bp):
AAAATAATA
Found at i:27470354 original size:26 final size:26
Alignment explanation
Indices: 27470318--27470388 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
27470308 TTTAGGACCT
27470318 AGATATCGATGGGCCTAATCAAGCCC
1 AGATATCGATGGGCCTAATCAAGCCC
27470344 AGATATCGATGGGCCTAATCAAGCCC
1 AGATATCGATGGGCCTAATCAAGCCC
*
27470370 AGATATCAATGGGCCTAAT
1 AGATATCGATGGGCCTAAT
27470389 AGGGCTTGAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.21
Consensus pattern (26 bp):
AGATATCGATGGGCCTAATCAAGCCC
Found at i:27490799 original size:20 final size:20
Alignment explanation
Indices: 27490761--27490799 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
27490751 ATTTGTTGTC
*
27490761 GAATATTTTAATTTGAATTT
1 GAATATTTTAAATTGAATTT
27490781 GAATATCTTTAAATT-AATT
1 GAATAT-TTTAAATTGAATT
27490800 AATATATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (20 bp):
GAATATTTTAAATTGAATTT
Found at i:27491351 original size:22 final size:23
Alignment explanation
Indices: 27491323--27491366 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
27491313 TGATTAATTA
* *
27491323 ATTAATT-ATTAAATTAATTTTG
1 ATTAATTAATAAAAGTAATTTTG
27491345 ATTAATTAATAAAAGTAATTTT
1 ATTAATTAATAAAAGTAATTTT
27491367 TAATTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (23 bp):
ATTAATTAATAAAAGTAATTTTG
Found at i:27491582 original size:16 final size:16
Alignment explanation
Indices: 27491555--27491587 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
27491545 AAAATTTTAA
27491555 AATTTAAAATATAATTT
1 AATTTAAAATAT-ATTT
27491572 AATTT-AAATATATTT
1 AATTTAAAATATATTT
27491587 A
1 A
27491588 TTATTCGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 6 0.38
17 5 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTTAAAATATATTT
Found at i:27500601 original size:3 final size:3
Alignment explanation
Indices: 27500593--27500618 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
27500583 TACACTTGTT
27500593 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
27500619 TTGAAATTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:27501996 original size:22 final size:22
Alignment explanation
Indices: 27501954--27501996 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
27501944 TGTTTAAATT
* * *
27501954 TTTAATAAAAATTATATATAAA
1 TTTAATAAAAATAAAAAATAAA
27501976 TTTAATAAAAATAAAAAATAA
1 TTTAATAAAAATAAAAAATAA
27501997 TATGTTTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAATAAAAATAAAAAATAAA
Found at i:27502703 original size:2 final size:2
Alignment explanation
Indices: 27502696--27502727 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
27502686 AGACGGTTTG
27502696 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
27502728 TATATATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:27502732 original size:2 final size:2
Alignment explanation
Indices: 27502727--27502756 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
27502717 ACACACACAC
27502727 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27502757 TATGCATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27505129 original size:21 final size:21
Alignment explanation
Indices: 27505105--27505145 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
27505095 ATTAAGTCAT
*
27505105 AATTCATGTAAATTTTTAAAA
1 AATTAATGTAAATTTTTAAAA
* *
27505126 AATTAATTTAATTTTTTAAA
1 AATTAATGTAAATTTTTAAA
27505146 TTCTAACTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
AATTAATGTAAATTTTTAAAA
Found at i:27507172 original size:44 final size:44
Alignment explanation
Indices: 27507109--27507193 Score: 170
Period size: 44 Copynumber: 1.9 Consensus size: 44
27507099 CAATCAGTTT
27507109 GCTACCTAACTAATACTACTCTCCCTCTCTGTTTCAAAAGGTTC
1 GCTACCTAACTAATACTACTCTCCCTCTCTGTTTCAAAAGGTTC
27507153 GCTACCTAACTAATACTACTCTCCCTCTCTGTTTCAAAAGG
1 GCTACCTAACTAATACTACTCTCCCTCTCTGTTTCAAAAGG
27507194 GAAGGGGTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.09, T:0.33
Consensus pattern (44 bp):
GCTACCTAACTAATACTACTCTCCCTCTCTGTTTCAAAAGGTTC
Found at i:27507751 original size:2 final size:2
Alignment explanation
Indices: 27507744--27507788 Score: 56
Period size: 2 Copynumber: 22.5 Consensus size: 2
27507734 TATCTTGACG
* *
27507744 TA TA TA TA TA T- TGA TA TA TA TA TA TA TA TT TA TA TA TT TA TA
1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
27507786 TA T
1 TA T
27507789 TTTACATAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
1 1 0.03
2 35 0.95
3 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (2 bp):
TA
Found at i:27507767 original size:18 final size:18
Alignment explanation
Indices: 27507744--27507788 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
27507734 TATCTTGACG
27507744 TATATATATATTGATATA
1 TATATATATATTGATATA
*
27507762 TATATATATATTTATATA
1 TATATATATATTGATATA
*
27507780 TTTATATAT
1 TATATATAT
27507789 TTTACATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
TATATATATATTGATATA
Found at i:27507790 original size:16 final size:16
Alignment explanation
Indices: 27507744--27507790 Score: 67
Period size: 16 Copynumber: 2.8 Consensus size: 16
27507734 TATCTTGACG
27507744 TATATATATATTGATATA
1 TATATATATATT--TATA
27507762 TATATATATATTTATA
1 TATATATATATTTATA
*
27507778 TATTTATATATTT
1 TATATATATATTT
27507791 TACATAGGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
16 16 0.57
18 12 0.43
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TATATATATATTTATA
Found at i:27510031 original size:21 final size:21
Alignment explanation
Indices: 27509998--27510037 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
27509988 AGCACTCTCC
27509998 AGCTCCAACAGAACGCAAAGT
1 AGCTCCAACAGAACGCAAAGT
*
27510019 AGCTACCAA-AGAAGGCAAA
1 AGCT-CCAACAGAACGCAAA
27510038 TTCTTGTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.47, C:0.25, G:0.20, T:0.07
Consensus pattern (21 bp):
AGCTCCAACAGAACGCAAAGT
Found at i:27513455 original size:21 final size:21
Alignment explanation
Indices: 27513402--27513461 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
27513392 TGAAGATTCG
27513402 GATTTTAAGGTTTT--GGTTT
1 GATTTTAAGGTTTTAAGGTTT
27513421 GAGTTTTAAGGGTTTTAAGGTTT
1 GA-TTTTAA-GGTTTTAAGGTTT
*
27513444 GATTTTAAGGTTTAAAGG
1 GATTTTAAGGTTTTAAGG
27513462 GTCTTAAGGC
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
19 2 0.06
20 6 0.17
21 15 0.42
22 6 0.17
23 7 0.19
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.48
Consensus pattern (21 bp):
GATTTTAAGGTTTTAAGGTTT
Found at i:27513469 original size:30 final size:31
Alignment explanation
Indices: 27513423--27513481 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
27513413 TTTGGTTTGA
* * *
27513423 GTTTTAAGGGTTTTAAGGTTTG-ATTTTAAG
1 GTTTAAAGGGTCTTAAGGCTTGAATTTTAAG
27513453 GTTTAAAGGGTCTTAAGGCTTGAATTTTA
1 GTTTAAAGGGTCTTAAGGCTTGAATTTTA
27513482 GGGTATGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 19 0.76
31 6 0.24
ACGTcount: A:0.25, C:0.03, G:0.25, T:0.46
Consensus pattern (31 bp):
GTTTAAAGGGTCTTAAGGCTTGAATTTTAAG
Found at i:27513500 original size:31 final size:30
Alignment explanation
Indices: 27513428--27513500 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 30
27513418 TTTGAGTTTT
* *
27513428 AAGGGTTTTAAGGTTTGATTTTAAGGTTTA
1 AAGGGTTTTAAGGCTTGATTTTAAGGTTGA
* *
27513458 AAGGGTCTTAAGGCTTGAATTTTAGGGTATGA
1 AAGGGTTTTAAGGCTTG-ATTTTAAGGT-TGA
27513490 AA-GGTTTTAAG
1 AAGGGTTTTAAG
27513501 TTTAATAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
30 15 0.42
31 17 0.47
32 4 0.11
ACGTcount: A:0.29, C:0.03, G:0.29, T:0.40
Consensus pattern (30 bp):
AAGGGTTTTAAGGCTTGATTTTAAGGTTGA
Found at i:27514979 original size:14 final size:11
Alignment explanation
Indices: 27514942--27514969 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
27514932 ACTTTTTTGT
27514942 TTTTTTTTTAA
1 TTTTTTTTTAA
27514953 TTTTTTTTTAA
1 TTTTTTTTTAA
27514964 TTTTTT
1 TTTTTT
27514970 AATTATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTTTTAA
Found at i:27515008 original size:14 final size:15
Alignment explanation
Indices: 27514991--27515019 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27514981 AACCAATATT
27514991 ATTATT-TTAAAAAA
1 ATTATTATTAAAAAA
27515005 ATTATTATTAAAAAA
1 ATTATTATTAAAAAA
27515020 TGTAGACTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTATTATTAAAAAA
Found at i:27515250 original size:36 final size:36
Alignment explanation
Indices: 27515210--27515338 Score: 156
Period size: 36 Copynumber: 3.6 Consensus size: 36
27515200 TAACGATAAT
*
27515210 TAGGATTGAATCGCAAGTCAAAGAAATAAAAATGAC
1 TAGGATTAAATCGCAAGTCAAAGAAATAAAAATGAC
* *
27515246 TAGGATTAAATCACAAGTCAGAGAAATAAAAATGAC
1 TAGGATTAAATCGCAAGTCAAAGAAATAAAAATGAC
* * *
27515282 TGGGATTAAATCGTAAGTC--AGAAAGTAAAAGTGA-
1 TAGGATTAAATCGCAAGTCAAAGAAA-TAAAAATGAC
*
27515316 TCAGGATTAACTCGCAAGTCAAA
1 T-AGGATTAAATCGCAAGTCAAA
27515339 AAGTAAAGAA
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
34 6 0.08
35 23 0.29
36 49 0.62
37 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.21
Consensus pattern (36 bp):
TAGGATTAAATCGCAAGTCAAAGAAATAAAAATGAC
Found at i:27515502 original size:24 final size:24
Alignment explanation
Indices: 27515447--27515516 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 24
27515437 ACCGTGAATC
*
27515447 AAAATTATGTTCGGAGGTCTT--A
1 AAAATTATGCTCGGAGGTCTTACA
* *
27515469 AAAATCATGCCCGGAGGTCTTACA
1 AAAATTATGCTCGGAGGTCTTACA
**
27515493 AAAATTATGCTCAAAGGTCTTACA
1 AAAATTATGCTCGGAGGTCTTACA
27515517 GAATCGACTA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
22 18 0.46
24 21 0.54
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29
Consensus pattern (24 bp):
AAAATTATGCTCGGAGGTCTTACA
Found at i:27515666 original size:87 final size:87
Alignment explanation
Indices: 27515507--27515666 Score: 214
Period size: 87 Copynumber: 1.8 Consensus size: 87
27515497 TTATGCTCAA
* * * *
27515507 AGGTCTTACAGAATCGACTAGAATAACACTACAAGTCAAAATTAAAAAATCGATCGGGATAATAT
1 AGGTCTTACAGAATCGACGAGAACAACACCACAAGTCAAAATTAAAAAATCGATCGGGATAACAT
*
27515572 CATGAATCGAAATTATGCCCGG
66 CACGAATCGAAATTATGCCCGG
** * *
27515594 AGGTCTTACAGAATCGATCGA-AACAACACCGTAAGTCAAAATTAAAGAATTGATCGGGATAACA
1 AGGTCTTACAGAATCGA-CGAGAACAACACCACAAGTCAAAATTAAAAAATCGATCGGGATAACA
*
27515658 TCGCGAATC
65 TCACGAATC
27515667 AAGGTATAAC
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
87 60 0.97
88 2 0.03
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (87 bp):
AGGTCTTACAGAATCGACGAGAACAACACCACAAGTCAAAATTAAAAAATCGATCGGGATAACAT
CACGAATCGAAATTATGCCCGG
Found at i:27516063 original size:174 final size:171
Alignment explanation
Indices: 27515850--27516236 Score: 553
Period size: 171 Copynumber: 2.2 Consensus size: 171
27515840 TATAAATCAG
*
27515850 AGAATAAAGAGATCAGAAATTAAATCGTGAACCAAAAAATGAC-ATTAACTTGGATTGAATCACA
1 AGAATAAAGAGATC-GAAATTAAATCGTGAATCAAAAAATGACGA-TAACTTGGATTGAATCACA
*
27515914 AGTCAAAAAATAAAAAGATCAAGAATAAATCACGAGTTAGAGGTTAACAACAACAATC-AAGATT
64 AGTCAAAAAATAAAAAGATCAAGAATAAATCACGAGTCAGAGGTT---AACAACAATCGAA-ATT
* * * * *
27515978 AAACTATGATTTTAAATTAAAGTGATTGACATTGAATCGCAAATCGA
125 AAACTACGATTTTAAATTAAAATAATCGACATTGAATCACAAATCGA
** * *
27516025 AGAATAAAGAGATCGGGATTAAATCGTGATTAAAAAAATGACGATAACTTGGATTGAATCACAAG
1 AGAATAAAGAGATCGAAATTAAATCGTGAATCAAAAAATGACGATAACTTGGATTGAATCACAAG
*
27516090 TCAAAAAATAAAAAGATCGAGAATAAATCACGAGTCAGAGGTTAACAACAATCGAAATTAAACTA
66 TCAAAAAATAAAAAGATCAAGAATAAATCACGAGTCAGAGGTTAACAACAATCGAAATTAAACTA
** *
27516155 CGATTTTAAATTAAAATAATCGGGATTGAATCACGAATCGA
131 CGATTTTAAATTAAAATAATCGACATTGAATCACAAATCGA
* *
27516196 AGAATAAAGAGATCAAAATTAAACCGTGAATCAAAAAATGA
1 AGAATAAAGAGATCGAAATTAAATCGTGAATCAAAAAATGA
27516237 AATGATCGGG
Statistics
Matches: 189, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
171 87 0.46
172 2 0.01
174 85 0.45
175 15 0.08
ACGTcount: A:0.50, C:0.12, G:0.16, T:0.22
Consensus pattern (171 bp):
AGAATAAAGAGATCGAAATTAAATCGTGAATCAAAAAATGACGATAACTTGGATTGAATCACAAG
TCAAAAAATAAAAAGATCAAGAATAAATCACGAGTCAGAGGTTAACAACAATCGAAATTAAACTA
CGATTTTAAATTAAAATAATCGACATTGAATCACAAATCGA
Found at i:27516269 original size:19 final size:19
Alignment explanation
Indices: 27516247--27516306 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
27516237 AATGATCGGG
27516247 ATTAAATTACGAGCCAAAT
1 ATTAAATTACGAGCCAAAT
* ** *
27516266 ATT-AATAACGA--CTGAG
1 ATTAAATTACGAGCCAAAT
27516282 ATTAAATTACGAGCCAAAT
1 ATTAAATTACGAGCCAAAT
27516301 ATTAAA
1 ATTAAA
27516307 AGTGATTGGG
Statistics
Matches: 30, Mismatches: 8, Indels: 6
0.68 0.18 0.14
Matches are distributed among these distances:
16 5 0.17
17 7 0.23
18 7 0.23
19 11 0.37
ACGTcount: A:0.48, C:0.13, G:0.12, T:0.27
Consensus pattern (19 bp):
ATTAAATTACGAGCCAAAT
Found at i:27517406 original size:12 final size:12
Alignment explanation
Indices: 27517381--27517433 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
27517371 TTCTTTCTCA
*
27517381 TTTTT-TTTCTT
1 TTTTTGTTTATT
27517392 TTTTGTGTTTATT
1 TTTT-TGTTTATT
*
27517405 TTTATTTTTGTATT
1 TTT-TTGTT-TATT
27517419 TTTTTGTTTATT
1 TTTTTGTTTATT
27517431 TTT
1 TTT
27517434 CTTTCTTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
11 4 0.11
12 8 0.23
13 15 0.43
14 8 0.23
ACGTcount: A:0.08, C:0.02, G:0.08, T:0.83
Consensus pattern (12 bp):
TTTTTGTTTATT
Done.