Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 40 of 190
Found at i:6860593 original size:18 final size:19
Alignment explanation
Indices: 6860562--6860599 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
6860552 TCCATCAATT
6860562 TTTATTTATCTTTTTATTA
1 TTTATTTATCTTTTTATTA
*
6860581 TTTATTT-TCTTTTTTTTA
1 TTTATTTATCTTTTTATTA
6860599 T
1 T
6860600 GAAAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTATTTATCTTTTTATTA
Found at i:6860787 original size:23 final size:21
Alignment explanation
Indices: 6860751--6860803 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
6860741 TCAATTTTTT
*
6860751 TTATTACTACAAATAATGTTCA
1 TTATTATTACAAATAAT-TTCA
* *
6860773 TGTATTATTATAAATAATTTTA
1 T-TATTATTACAAATAATTTCA
6860795 TTATTATTA
1 TTATTATTA
6860804 AAAAGATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.30
22 5 0.19
23 14 0.52
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.51
Consensus pattern (21 bp):
TTATTATTACAAATAATTTCA
Found at i:6862926 original size:25 final size:25
Alignment explanation
Indices: 6862893--6862942 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
6862883 GATTATCATC
6862893 TTTTTAGGGATTGAAAGTTTTAAAT
1 TTTTTAGGGATTGAAAGTTTTAAAT
*
6862918 TTTTTAGGGATTGAACGTTTTAAAT
1 TTTTTAGGGATTGAAAGTTTTAAAT
6862943 CTAAGAGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (25 bp):
TTTTTAGGGATTGAAAGTTTTAAAT
Found at i:6869036 original size:25 final size:25
Alignment explanation
Indices: 6869004--6869061 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
6868994 CTAACCGATA
6869004 ACATTTCAATGTCATGACATTCATC
1 ACATTTCAATGTCATGACATTCATC
6869029 ACATTTCAATGTCATGACATTCATC
1 ACATTTCAATGTCATGACATTCATC
*
6869054 ACTTTTCA
1 ACATTTCA
6869062 TGGCATTAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (25 bp):
ACATTTCAATGTCATGACATTCATC
Found at i:6869592 original size:30 final size:31
Alignment explanation
Indices: 6869558--6869625 Score: 86
Period size: 30 Copynumber: 2.2 Consensus size: 31
6869548 ATGTGTCATA
*
6869558 AGTCCTTATACTATTAATTTTT-AA-GACTTT
1 AGTCCTTATACTATT-ATTTTTAAAGGAATTT
* *
6869588 AGTCCCTATAGTATTATTTTTAAAGGAATTT
1 AGTCCTTATACTATTATTTTTAAAGGAATTT
6869619 AGTCCTT
1 AGTCCTT
6869626 GTGCATTGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 6 0.19
30 15 0.47
31 11 0.34
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.47
Consensus pattern (31 bp):
AGTCCTTATACTATTATTTTTAAAGGAATTT
Found at i:6869721 original size:29 final size:30
Alignment explanation
Indices: 6869643--6869721 Score: 74
Period size: 29 Copynumber: 2.6 Consensus size: 30
6869633 GTTAACGATT
*
6869643 GAACTGAAATCCTTAAAAAATAATACTATAAG
1 GAACT-AAATTCTT-AAAAATAATACTATAAG
* * *
6869675 G-ATTAAATTTCTT-TAAATAATACTA-GAG
1 GAACTAAA-TTCTTAAAAATAATACTATAAG
6869703 GAACTAAATTCTTAAAAAT
1 GAACTAAATTCTTAAAAAT
6869722 CGAAGAGTAC
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
28 8 0.21
29 20 0.53
30 3 0.08
31 6 0.16
32 1 0.03
ACGTcount: A:0.49, C:0.10, G:0.09, T:0.32
Consensus pattern (30 bp):
GAACTAAATTCTTAAAAATAATACTATAAG
Found at i:6877768 original size:29 final size:28
Alignment explanation
Indices: 6877716--6877770 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
6877706 TTGCCAAATT
*
6877716 TGTTATAATGATTACTAATTAATTATTA
1 TGTTATAATGATTACTAATAAATTATTA
* *
6877744 TGTTATCAATTATTACTACTAAATTAT
1 TGTTAT-AATGATTACTAATAAATTAT
6877771 ACTACTTACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 6 0.26
29 17 0.74
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.49
Consensus pattern (28 bp):
TGTTATAATGATTACTAATAAATTATTA
Found at i:6879769 original size:30 final size:29
Alignment explanation
Indices: 6879704--6879788 Score: 82
Period size: 30 Copynumber: 2.8 Consensus size: 29
6879694 GACTTAGGTA
* * *
6879704 CAAATTAAAGATTATGGGCTTATTTGGATG
1 CAAATTAAAG-TTAAGGGTTTATTTAGATG
*
6879734 AAAATTAAAGTTTAAGGGTTTATTTA-AGTG
1 CAAATTAAAG-TTAAGGGTTTATTTAGA-TG
*
6879764 CAAATTAAAAGTTAAGGATTTATTT
1 CAAATT-AAAGTTAAGGGTTTATTT
6879789 GGGTACAATA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
29 1 0.02
30 41 0.89
31 4 0.09
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.39
Consensus pattern (29 bp):
CAAATTAAAGTTAAGGGTTTATTTAGATG
Found at i:6880264 original size:18 final size:19
Alignment explanation
Indices: 6880241--6880278 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
6880231 TTAAATTTTC
6880241 TTTTATT-TA-AATAAATAT
1 TTTTATTATATAA-AAATAT
6880259 TTTTATTATATAAAAATAT
1 TTTTATTATATAAAAATAT
6880278 T
1 T
6880279 AAAAATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 9 0.50
20 2 0.11
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTATTATATAAAAATAT
Found at i:6883236 original size:16 final size:16
Alignment explanation
Indices: 6883217--6883263 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
6883207 TTAAAAAGTT
6883217 TTATACAATAGATATG
1 TTATACAATAGATATG
* * *
6883233 TTATA-AATAAAAAGTT
1 TTATACAATAGATA-TG
6883249 TTATACAATAGATAT
1 TTATACAATAGATAT
6883264 CTTAAGATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
15 6 0.25
16 12 0.50
17 6 0.25
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (16 bp):
TTATACAATAGATATG
Found at i:6883244 original size:32 final size:32
Alignment explanation
Indices: 6883202--6883263 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
6883192 CATATTACCA
*
6883202 TATAATTAAAAAGTTTTATACAATAGATATGT
1 TATAAATAAAAAGTTTTATACAATAGATATGT
6883234 TATAAATAAAAAGTTTTATACAATAGATAT
1 TATAAATAAAAAGTTTTATACAATAGATAT
6883264 CTTAAGATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.50, C:0.03, G:0.08, T:0.39
Consensus pattern (32 bp):
TATAAATAAAAAGTTTTATACAATAGATATGT
Found at i:6883915 original size:15 final size:16
Alignment explanation
Indices: 6883895--6883931 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
6883885 ATTCTATATA
6883895 AAAAAAG-TTAATAAT
1 AAAAAAGTTTAATAAT
*
6883910 AAAAAAGTTTAATTAT
1 AAAAAAGTTTAATAAT
6883926 AAAAAA
1 AAAAAA
6883932 TTATTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (16 bp):
AAAAAAGTTTAATAAT
Found at i:6886203 original size:2 final size:2
Alignment explanation
Indices: 6886196--6886221 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6886186 TAAAAGCCTA
6886196 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6886222 TTTTCATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6887491 original size:61 final size:59
Alignment explanation
Indices: 6887397--6887772 Score: 333
Period size: 60 Copynumber: 6.3 Consensus size: 59
6887387 CATTTGGAAG
* *
6887397 TTTTTATTTT-AAGGAAAATTGATACTTTTAACTTTTCCTCAAAAATATTTTTTTTGATAA
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTT-A-AA
* * * *
6887457 TTTTTATTTTTAAGAAAAATTGGTACTTCCAACTTTTCCTCAAAATATTTTTTTTTTGAAA
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAA-ATATTTTTTTT-AAA
* * * *
6887518 -TTTTAATTTCAATAAAAATTGATACTTTCAACTTTTTCCT-AACAATATTTTTTTAAAA
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTTTTTAAA
* ** * * *
6887576 CTTTTCATTTTCAAGGGAAATTGATACTTTTAAATTTCTCC-CAAAAACATATATATTTTTT-TA
1 -TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTT-TCCTC-AAAA-ATAT-T-TTTTTTAAA
* * * *
6887639 TTTTTGTGTTCAA-AGAAAATTGATACATTCAAC-TTTCTTTCAAAAATA--TTTTTTAAA
1 TTTTTATTTTCAAGA-AAAATTGATACTTTCAACTTTTC-CTCAAAAATATTTTTTTTAAA
* * *
6887696 ATTTTATTTTCAAGAAAAATTAATACTTTCAACTTTTCCTCAAAAATATATTTTTTGGAAA
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATAT-TTTTTT-TAAA
6887757 -TTTTATTTT-AAGAAAA
1 TTTTTATTTTCAAGAAAA
6887773 TAAAATTAAA
Statistics
Matches: 255, Mismatches: 40, Indels: 43
0.75 0.12 0.13
Matches are distributed among these distances:
56 6 0.02
57 36 0.14
58 8 0.03
59 19 0.07
60 87 0.34
61 51 0.20
62 41 0.16
63 2 0.01
64 5 0.02
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.48
Consensus pattern (59 bp):
TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTAAA
Found at i:6887789 original size:6 final size:6
Alignment explanation
Indices: 6887769--6887816 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
6887759 TTATTTTAAG
6887769 AAAA-T AAAATT -AAATT AAAATT AAAATT AAAATT AAAA-T AAAATT
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
6887814 AAA
1 AAA
6887817 GAATACCAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
5 14 0.35
6 26 0.65
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
AAAATT
Found at i:6887789 original size:11 final size:11
Alignment explanation
Indices: 6887773--6887816 Score: 70
Period size: 11 Copynumber: 3.9 Consensus size: 11
6887763 TTTAAGAAAA
6887773 TAAAATTAAAT
1 TAAAATTAAAT
6887784 TAAAATTAAAAT
1 TAAAATT-AAAT
*
6887796 TAAAATTAAAA
1 TAAAATTAAAT
6887807 TAAAATTAAA
1 TAAAATTAAA
6887817 GAATACCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 20 0.65
12 11 0.35
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAATTAAAT
Found at i:6887795 original size:17 final size:16
Alignment explanation
Indices: 6887769--6887816 Score: 78
Period size: 17 Copynumber: 2.9 Consensus size: 16
6887759 TTATTTTAAG
6887769 AAAATAAAATTAAATT
1 AAAATAAAATTAAATT
6887785 AAAATTAAAATTAAAATT
1 AAAA-TAAAATT-AAATT
6887803 AAAATAAAATTAAA
1 AAAATAAAATTAAA
6887817 GAATACCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.23
17 14 0.47
18 9 0.30
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATAAAATTAAATT
Found at i:6889005 original size:44 final size:44
Alignment explanation
Indices: 6888847--6889388 Score: 273
Period size: 44 Copynumber: 12.1 Consensus size: 44
6888837 GTGAATAAAA
* * * * **
6888847 CTCCTCTAAACAGAGGCTCAATGACTTTTG-AAAAT-AA-ATTG
1 CTCCTCTAAATAGAAGCTCAATAACTTTGGAAAAATAAACAAAG
* * * *
6888888 CTCCTCT-AATAAAAGGCTCAACAACTTTGG-AAAATAAATAAATTA
1 CTCCTCTAAATAGAA-GCTCAATAACTTTGGAAAAATAAACAAA--G
* * * *
6888933 CTCTTTTAAACAG-AGCCTCAATAACTTTGGAAAAATAAAAAAAG
1 CTCCTCTAAATAGAAG-CTCAATAACTTTGGAAAAATAAACAAAG
* * *
6888977 CTCCTCTAAATAGAAGCTCAATGACTTTGAAAAAAATAAACAAGG
1 CTCCTCTAAATAGAAGCTCAATAACTTTG-GAAAAATAAACAAAG
* * * *
6889022 CTCAACGACTTTGGAAAAATAAACAAGGCTCAACAACTTTGGAAAAATAAACAAGG
1 CT---C--CTCT----AAAT--AGAA-GCTCAATAACTTTGGAAAAATAAACAAAG
* * * * *
6889078 CTCCTCT-AATCA-AAGGTTTAACAACTTTGG-AAAATAAATAAGG
1 CTCCTCTAAAT-AGAA-GCTCAATAACTTTGGAAAAATAAACAAAG
* * ** *
6889121 CTCCTCTAAATAGAGGCTCAATGACTTTTAAAAAATAAATAAAG
1 CTCCTCTAAATAGAAGCTCAATAACTTTGGAAAAATAAACAAAG
* * * ** *
6889165 CTCATCTAAACAGAGGCTCAACGACTTTGGAAAAATAAACAAGG
1 CTCCTCTAAATAGAAGCTCAATAACTTTGGAAAAATAAACAAAG
* * * *
6889209 CTCCTCT-AATCAGAGGCTTAATAACTTT-GAAAAATAAACCAGG
1 CTCCTCTAAAT-AGAAGCTCAATAACTTTGGAAAAATAAACAAAG
* * * * *
6889252 CTCCTTTAAACA-AAGGCTCAATGACTTTTGAAAAATAAACAATG
1 CTCCTCTAAATAGAA-GCTCAATAACTTTGGAAAAATAAACAAAG
* ** * * *
6889296 CTCATCTAAGCAGAGGCTCAACAACTTTGAAAAAATAAACAAAG
1 CTCCTCTAAATAGAAGCTCAATAACTTTGGAAAAATAAACAAAG
* * * * * *
6889340 CTCCTCTAAACA-AAGGTTCAACAACTTTTGAAAAATAAACTAGG
1 CTCCTCTAAATAGAA-GCTCAATAACTTTGGAAAAATAAACAAAG
6889384 CTCCT
1 CTCCT
6889389 TGACAATCAT
Statistics
Matches: 392, Mismatches: 78, Indels: 59
0.74 0.15 0.11
Matches are distributed among these distances:
40 4 0.01
41 24 0.06
42 3 0.01
43 65 0.17
44 199 0.51
45 37 0.09
46 17 0.04
48 1 0.00
50 3 0.01
51 3 0.01
53 1 0.00
54 4 0.01
56 19 0.05
57 12 0.03
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.24
Consensus pattern (44 bp):
CTCCTCTAAATAGAAGCTCAATAACTTTGGAAAAATAAACAAAG
Found at i:6889048 original size:28 final size:28
Alignment explanation
Indices: 6888992--6889080 Score: 142
Period size: 28 Copynumber: 3.1 Consensus size: 28
6888982 CTAAATAGAA
* *
6888992 GCTCAATGACTTTGAAAAAAATAAACAAG
1 GCTCAACGACTTTG-GAAAAATAAACAAG
6889021 GCTCAACGACTTTGGAAAAATAAACAAG
1 GCTCAACGACTTTGGAAAAATAAACAAG
*
6889049 GCTCAACAACTTTGGAAAAATAAACAAG
1 GCTCAACGACTTTGGAAAAATAAACAAG
6889077 GCTC
1 GCTC
6889081 CTCTAATCAA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 44 0.77
29 13 0.23
ACGTcount: A:0.47, C:0.18, G:0.16, T:0.19
Consensus pattern (28 bp):
GCTCAACGACTTTGGAAAAATAAACAAG
Found at i:6889193 original size:87 final size:88
Alignment explanation
Indices: 6889047--6889388 Score: 384
Period size: 87 Copynumber: 3.9 Consensus size: 88
6889037 AAAATAAACA
* ** * * * * *
6889047 AGGCTCAACAACTTTGGAAAAATAAACAAGGCTCCTCTAATCAAAGGTTTAACAAC-TTTGGAAA
1 AGGCTCAATAACTTTTAAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACAACTTTTGAAAA
*
6889111 ATAAATAAGGCTCCTCTAAATAG
66 ATAAACAAGGCTCCTCTAAATAG
* * * * * *
6889134 AGGCTCAATGACTTTTAAAAAATAAATAAAGCTCATCTAAACAGAGGCTCAACGACTTTGGAAAA
1 AGGCTCAATAACTTTTAAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACAACTTTTGAAAA
6889199 ATAAACAAGGCTCCTCT-AATCAG
66 ATAAACAAGGCTCCTCTAAAT-AG
* * * * * **
6889222 AGGCTTAATAAC-TTTGAAAAATAAACCAGGCTCCTTTAAACAAAGGCTCAATGACTTTTGAAAA
1 AGGCTCAATAACTTTTAAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACAACTTTTGAAAA
* * **
6889286 ATAAACAATGCTCATCTAAGCAG
66 ATAAACAAGGCTCCTCTAAATAG
* * *
6889309 AGGCTCAACAACTTTGAAAAAATAAACAAAGCTCCTCTAAACAAAGGTTCAACAACTTTTGAAAA
1 AGGCTCAATAACTTTTAAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACAACTTTTGAAAA
*
6889374 ATAAACTAGGCTCCT
66 ATAAACAAGGCTCCT
6889389 TGACAATCAT
Statistics
Matches: 208, Mismatches: 43, Indels: 7
0.81 0.17 0.03
Matches are distributed among these distances:
87 117 0.56
88 91 0.44
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (88 bp):
AGGCTCAATAACTTTTAAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACAACTTTTGAAAA
ATAAACAAGGCTCCTCTAAATAG
Found at i:6889286 original size:131 final size:130
Alignment explanation
Indices: 6889041--6889389 Score: 502
Period size: 131 Copynumber: 2.7 Consensus size: 130
6889031 TTTGGAAAAA
6889041 TAAACA-AGGCTCAACAACTTTGGAAAAATAAACAAGGCTCCTCTAATCAAAGGTTTAACAACTT
1 TAAACAGAGGCTCAACAACTTTGGAAAAATAAACAAGGCTCCTCTAATCAAAGG-TTAACAACTT
* * * * * *
6889105 TGGAAAATAAATAAGGCTCCTCTAAATAGAGGCTCAATGACTTTTAAAAAATAAATAAAGCTCAT
65 TGAAAAATAAACAAGGCTCCTTTAAACAAAGGCTCAATGACTTTTAAAAAATAAACAAAGCTCAT
6889170 C
130 C
* * *
6889171 TAAACAGAGGCTCAACGACTTTGGAAAAATAAACAAGGCTCCTCTAATCAGAGGCTTAATAACTT
1 TAAACAGAGGCTCAACAACTTTGGAAAAATAAACAAGGCTCCTCTAATCAAAGG-TTAACAACTT
* * *
6889236 TGAAAAATAAACCAGGCTCCTTTAAACAAAGGCTCAATGACTTTTGAAAAATAAACAATGCTCAT
65 TGAAAAATAAACAAGGCTCCTTTAAACAAAGGCTCAATGACTTTTAAAAAATAAACAAAGCTCAT
6889301 C
130 C
* * * *
6889302 TAAGCAGAGGCTCAACAACTTTGAAAAAATAAACAAAGCTCCTCTAAACAAAGGTTCAACAACTT
1 TAAACAGAGGCTCAACAACTTTGGAAAAATAAACAAGGCTCCTCTAATCAAAGGTT-AACAAC-T
*
6889367 TTGAAAAATAAACTAGGCTCCTT
64 TTGAAAAATAAACAAGGCTCCTT
6889390 GACAATCATG
Statistics
Matches: 195, Mismatches: 21, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
130 8 0.04
131 164 0.84
132 23 0.12
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.24
Consensus pattern (130 bp):
TAAACAGAGGCTCAACAACTTTGGAAAAATAAACAAGGCTCCTCTAATCAAAGGTTAACAACTTT
GAAAAATAAACAAGGCTCCTTTAAACAAAGGCTCAATGACTTTTAAAAAATAAACAAAGCTCATC
Found at i:6889657 original size:16 final size:16
Alignment explanation
Indices: 6889628--6889668 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
6889618 AATGCAGTAT
*
6889628 ATGCTATGCGAAATGCA
1 ATGC-ATGCAAAATGCA
*
6889645 ATGCATGCAAAATTCA
1 ATGCATGCAAAATGCA
6889661 ATGCATGC
1 ATGCATGC
6889669 TATGCAAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 18 0.82
17 4 0.18
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (16 bp):
ATGCATGCAAAATGCA
Found at i:6898041 original size:21 final size:21
Alignment explanation
Indices: 6898017--6898063 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
6898007 AACCTTTGTC
*
6898017 TCAACCTACTTAAGTAGCTGT
1 TCAACCTACTTAAGTAACTGT
*
6898038 TCAACTTACTTAAGTAACTGT
1 TCAACCTACTTAAGTAACTGT
6898059 TCAAC
1 TCAAC
6898064 ATGTTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (21 bp):
TCAACCTACTTAAGTAACTGT
Found at i:6900932 original size:14 final size:15
Alignment explanation
Indices: 6900905--6900937 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
6900895 TCAAAACACT
*
6900905 TTTTGAGAATTTTTA
1 TTTTGAGAAATTTTA
6900920 TTTT-AGAAATTTTA
1 TTTTGAGAAATTTTA
6900934 TTTT
1 TTTT
6900938 CAAGGAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (15 bp):
TTTTGAGAAATTTTA
Found at i:6901072 original size:58 final size:59
Alignment explanation
Indices: 6900925--6901091 Score: 196
Period size: 58 Copynumber: 2.8 Consensus size: 59
6900915 TTTTATTTTA
*
6900925 GAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTCTTCCTCAAAA-ATATTTTTCTT
1 GAAATTTTATTTT-AAGGAAAATTGATACTTTCAACTTTTCCTCAAAATATATTTTTCTT
* * * *
6900984 GATAATTTTTTTTTAAGGAAAATTGGTAC-TTCTAACTTTTCCTCAAAATGTTTTTTTC-T
1 GA-AATTTTATTTTAAGGAAAATTGATACTTTC-AACTTTTCCTCAAAATATATTTTTCTT
* ** * *
6901043 GAAATTTTAATTTAAAAAAAAATGATACTTTCAACTTTTTCTCAAAATA
1 GAAATTTTATTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAATA
6901092 CTTTTTAAGA
Statistics
Matches: 91, Mismatches: 13, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
58 38 0.42
59 36 0.40
60 17 0.19
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (59 bp):
GAAATTTTATTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAATATATTTTTCTT
Found at i:6901121 original size:14 final size:15
Alignment explanation
Indices: 6901094--6901126 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
6901084 TCAAAATACT
*
6901094 TTTTAAGAATTTTTA
1 TTTTAAGAAATTTTA
6901109 TTTT-AGAAATTTTA
1 TTTTAAGAAATTTTA
6901123 TTTT
1 TTTT
6901127 CAAGTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (15 bp):
TTTTAAGAAATTTTA
Found at i:6901152 original size:57 final size:58
Alignment explanation
Indices: 6901101--6901301 Score: 216
Period size: 58 Copynumber: 3.4 Consensus size: 58
6901091 ACTTTTTAAG
*
6901101 AATTTTTATTTTAGAAATTTTATTTTC-AAGTAAAATTGATACTTTCAACTTTATCCCAAA
1 AATTTTT-TTTTAGAAATTTTATTTTCAAAG-AAAATTGATACTTTCAACTTT-TCTCAAA
* * * *
6901161 ACATATTTTTTT----ATTTTGATGTTCAAAGAAAATTGATACATTCAACTTTCTTTCAAA
1 A-ATTTTTTTTTAGAAATTTT-ATTTTCAAAGAAAATTGATACTTTCAACTTT-TCTCAAA
* *
6901218 AA-TATTTTTTAAAAATTTTATTTTCAAAGAAAATTGATACTTTCAACTTTTGCTCAAA
1 AATTTTTTTTTAGAAATTTTATTTTCAAAGAAAATTGATACTTTCAACTTTT-CTCAAA
*
6901276 AATATTTTTTTTGGAAATTTTATTTT
1 AAT-TTTTTTTTAGAAATTTTATTTT
6901302 AGGAAAACAA
Statistics
Matches: 117, Mismatches: 14, Indels: 20
0.77 0.09 0.13
Matches are distributed among these distances:
55 6 0.05
56 6 0.05
57 32 0.27
58 39 0.33
59 5 0.04
60 24 0.21
61 5 0.04
ACGTcount: A:0.36, C:0.10, G:0.06, T:0.48
Consensus pattern (58 bp):
AATTTTTTTTTAGAAATTTTATTTTCAAAGAAAATTGATACTTTCAACTTTTCTCAAA
Found at i:6901299 original size:189 final size:187
Alignment explanation
Indices: 6900870--6901303 Score: 506
Period size: 189 Copynumber: 2.3 Consensus size: 187
6900860 TTTGTATAAG
* *
6900870 AAAAATTGATACTTTCAACTTTTCCTCAAAACACTTTTTGAGAATTTTTATTTTAGAAATTTTAT
1 AAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTG-GAATTTTTATTTTAGAAATTTTAT
* * *
6900935 TTTCAAGGAAAATTGATACTTTCAACTCTTCCTCAAAAATATTTTTCTTGATAATTTTTTTTTAA
65 TTTCAAGGAAAATTGATACTTTCAACTCTTCCTCAAAAATATTTTTCTTGAT-ATTTATGTTCAA
* * * **
6901000 GGAAAATTGGTACTTCTAACTTTTCCTCAAAATGTTTTTTTCTGAAATTTTAATTTAAA
129 AGAAAATTGATACTTCTAACTTTTCCTCAAAATGATTTTTTCAAAAATTTTAATTTAAA
* * **
6901059 AAAAAATGATACTTTCAACTTTTTCTCAAAATACTTTTTAAGAATTTTTATTTTAGAAATTTTAT
1 AAAAATTGATACTTTCAACTTTTCCTCAAAATA-TTTTTTGGAATTTTTATTTTAGAAATTTTAT
* *
6901124 TTTCAAGTAAAATTGATACTTTCAACTTTATCC-CAAAACATATTTTT-TT-AT-TTTGATGTTC
65 TTTCAAGGAAAATTGATACTTTCAACTCT-TCCTCAAAA-ATATTTTTCTTGATATTT-ATGTTC
* *
6901185 AAAGAAAATTGATACATTC-AAC-TTTCTTTCAAAAAT-ATTTTTT-AAAAATTTTATTTTCAAA
127 AAAGAAAATTGATAC-TTCTAACTTTTC-CTC-AAAATGATTTTTTCAAAAATTTTAATTT-AAA
* * *
6901246 GAAAATTGATACTTTCAACTTTTGCTCAAAAATATTTTTTTTGGAAATTTTATTTTAG
1 AAAAATTGATACTTTCAACTTTTCCTC-AAAATA--TTTTTTGGAATTTTTATTTTAG
6901304 GAAAACAAAA
Statistics
Matches: 210, Mismatches: 25, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
186 18 0.09
187 54 0.26
188 16 0.08
189 107 0.51
190 15 0.07
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.47
Consensus pattern (187 bp):
AAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTGGAATTTTTATTTTAGAAATTTTATT
TTCAAGGAAAATTGATACTTTCAACTCTTCCTCAAAAATATTTTTCTTGATATTTATGTTCAAAG
AAAATTGATACTTCTAACTTTTCCTCAAAATGATTTTTTCAAAAATTTTAATTTAAA
Found at i:6902297 original size:24 final size:22
Alignment explanation
Indices: 6902265--6902315 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
6902255 TGAACTTTGA
**
6902265 TTTTTTATAGTATTTTTTGTTTT
1 TTTTTTATA-TATTTTTTGGCTT
*
6902288 TTTTTCTATATTTTTTTTGGCTT
1 TTTTT-TATATATTTTTTGGCTT
6902311 TTTTT
1 TTTTT
6902316 AGTTTTTACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.10, C:0.04, G:0.08, T:0.78
Consensus pattern (22 bp):
TTTTTTATATATTTTTTGGCTT
Found at i:6902964 original size:18 final size:16
Alignment explanation
Indices: 6902941--6902995 Score: 65
Period size: 18 Copynumber: 3.2 Consensus size: 16
6902931 TCAAAAAATA
* *
6902941 TTTTTTGTCTTGTTTT
1 TTTTTTTTCTTTTTTT
6902957 TTTTTTTTCATTTTTTT
1 TTTTTTTTC-TTTTTTT
6902974 TTGTTTTTTCTTATTTTT
1 TT-TTTTTTCTT-TTTTT
6902992 TTTT
1 TTTT
6902996 AATTTGACCA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
16 8 0.24
17 12 0.35
18 14 0.41
ACGTcount: A:0.04, C:0.05, G:0.05, T:0.85
Consensus pattern (16 bp):
TTTTTTTTCTTTTTTT
Found at i:6902980 original size:20 final size:19
Alignment explanation
Indices: 6902953--6902995 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
6902943 TTTTGTCTTG
6902953 TTTTTTTTTTTTC--ATTT
1 TTTTTTTTTTTTCTTATTT
6902970 TTTTTTGTTTTTTCTTATTT
1 TTTTTT-TTTTTTCTTATTT
6902990 TTTTTT
1 TTTTTT
6902996 AATTTGACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.26
18 7 0.30
20 10 0.43
ACGTcount: A:0.05, C:0.05, G:0.02, T:0.88
Consensus pattern (19 bp):
TTTTTTTTTTTTCTTATTT
Found at i:6903000 original size:11 final size:10
Alignment explanation
Indices: 6902956--6902996 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
6902946 TGTCTTGTTT
6902956 TTTTTTTTTCA
1 TTTTTTTTT-A
*
6902967 TTTTTTTTTG
1 TTTTTTTTTA
*
6902977 TTTTTTCTTA
1 TTTTTTTTTA
6902987 TTTTTTTTTA
1 TTTTTTTTTA
6902997 ATTTGACCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.07, C:0.05, G:0.02, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:6903546 original size:40 final size:39
Alignment explanation
Indices: 6903502--6903607 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 39
6903492 GGAGGTCTGG
*
6903502 GAAATCATTTAAAATTTTAAGATTTTGCCCGAAAGTCTT
1 GAAATCATTTAAAAATTTAAGATTTTGCCCGAAAGTCTT
* * * **
6903541 AGAAATCATTTAAAAATTTAACAATTTGCTCGATGGTCTT
1 -GAAATCATTTAAAAATTTAAGATTTTGCCCGAAAGTCTT
6903581 GAAAATC-TTTCAAAAATTTAAGATTTT
1 G-AAATCATTT-AAAAATTTAAGATTTT
6903608 TCCTAGAGGT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
39 4 0.07
40 52 0.93
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (39 bp):
GAAATCATTTAAAAATTTAAGATTTTGCCCGAAAGTCTT
Found at i:6903863 original size:104 final size:105
Alignment explanation
Indices: 6903724--6903936 Score: 297
Period size: 104 Copynumber: 2.0 Consensus size: 105
6903714 TAAAGATTTA
* * *
6903724 AGATTTTGTTTGGAGGTCTTGAAAATCATGTAAAAAAAATTGAAGTTTTGCTCAAAAG-TCTTTG
1 AGATTTTGTTTGAAGGTCTTGAAAATCATGTAAAAAAAACTAAAGTTTTGC-CAAAAGCTCTTTG
* * *
6903788 GAAATCATTTAAAATTTTAAAA-TTTGCCTAGAGGTCTTGG
65 GAAATCATTCAAAATTTTAAAATTTTACCTAGAGGTCTTAG
* * *
6903828 AGATTTT-TTTCGAAGGTCTTGGAAATCATGTAAAAAAAACTAAAGTTTTGCCCAAAGCTTTTTG
1 AGATTTTGTTT-GAAGGTCTTGAAAATCATGTAAAAAAAACTAAAGTTTTGCCAAAAGCTCTTTG
*
6903892 GAAATCATTCAAAATTTTAAAATTTTACCTCGAGGTCTTAG
65 GAAATCATTCAAAATTTTAAAATTTTACCTAGAGGTCTTAG
6903933 AGAT
1 AGAT
6903937 CATTCAAAGA
Statistics
Matches: 96, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
103 8 0.08
104 69 0.72
105 19 0.20
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (105 bp):
AGATTTTGTTTGAAGGTCTTGAAAATCATGTAAAAAAAACTAAAGTTTTGCCAAAAGCTCTTTGG
AAATCATTCAAAATTTTAAAATTTTACCTAGAGGTCTTAG
Found at i:6904050 original size:121 final size:122
Alignment explanation
Indices: 6903888--6904110 Score: 326
Period size: 121 Copynumber: 1.8 Consensus size: 122
6903878 CCCAAAGCTT
* *
6903888 TTTGGAAATCATTCAAAATTTTAAAATTTTACCTCGAGGTCTTAGAGAT-CATTCAAAGATTTAA
1 TTTGAAAATCATTCAAAATTTAAAAATTTTACCTCGAGGTCTTAGAGATCCATT-AAAGATTTAA
*
6903952 GATTTTACTTAGAGTTCTTGGAGATCATTCAAA-ATTTTAAAATTTTTCTTGAAAGTC
65 GATTTTACTTAGAGATCTTGGAGATCATTCAAAGATTTTAAAATTTTTCTTGAAAGTC
* * *
6904009 TTTGAAAATCATTCAAAATTTAAAAATTTT-GCTTGACGGTCTTAGAGATCCCTTAAAGATTTAA
1 TTTGAAAATCATTCAAAATTTAAAAATTTTACCTCGA-GGTCTTAGAGATCCATTAAAGATTTAA
** *
6904073 GATTTTGGTTAGAGATCTTGGAGTTCATTCAAAGATTT
65 GATTTTACTTAGAGATCTTGGAGATCATTCAAAGATTT
6904111 GGAGATCATT
Statistics
Matches: 90, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
120 4 0.04
121 79 0.88
122 7 0.08
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (122 bp):
TTTGAAAATCATTCAAAATTTAAAAATTTTACCTCGAGGTCTTAGAGATCCATTAAAGATTTAAG
ATTTTACTTAGAGATCTTGGAGATCATTCAAAGATTTTAAAATTTTTCTTGAAAGTC
Found at i:6904107 original size:40 final size:39
Alignment explanation
Indices: 6903889--6904110 Score: 164
Period size: 40 Copynumber: 5.5 Consensus size: 39
6903879 CCAAAGCTTT
* * * *
6903889 TTGGAAATCATTCAAA-ATTTTAAAATTTTACCTCGAGGTC
1 TTGGAGATCATTCAAAGA-TTTAAAATTTT-GCTTGAGATC
* * * *
6903929 TTAGAGATCATTCAAAGATTTAAGATTTTACTTAGAGTTC
1 TTGGAGATCATTCAAAGATTTAAAATTTTGCTT-GAGATC
* *
6903969 TTGGAGATCATTCAAA-ATTTTAAAATTTTTCTTGAAAGTC
1 TTGGAGATCATTCAAAGA-TTTAAAATTTTGCTTGAGA-TC
* * *
6904009 TTTGAAAATCATTCAAA-ATTTAAAAATTTTGCTTGACGGTC
1 -TTGGAGATCATTCAAAGATTT-AAAATTTTGCTTGA-GATC
* * * *
6904050 TTAGAGATCCCTT-AAAGATTTAAGATTTTGGTTAGAGATC
1 TTGGAGAT-CATTCAAAGATTTAAAATTTTGCTT-GAGATC
*
6904090 TTGGAGTTCATTCAAAGATTT
1 TTGGAGATCATTCAAAGATTT
6904111 GGAGATCATT
Statistics
Matches: 145, Mismatches: 26, Indels: 22
0.75 0.13 0.11
Matches are distributed among these distances:
39 8 0.06
40 97 0.67
41 40 0.28
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (39 bp):
TTGGAGATCATTCAAAGATTTAAAATTTTGCTTGAGATC
Found at i:6904114 original size:19 final size:19
Alignment explanation
Indices: 6904085--6904129 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
6904075 TTTTGGTTAG
*
6904085 AGATCTTGGAGTTCATTCAA
1 AGAT-TTGGAGATCATTCAA
6904105 AGATTTGGAGATCATTCAA
1 AGATTTGGAGATCATTCAA
*
6904124 ATATTT
1 AGATTT
6904130 AAGATTTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (19 bp):
AGATTTGGAGATCATTCAA
Found at i:6904250 original size:181 final size:180
Alignment explanation
Indices: 6903932--6904259 Score: 401
Period size: 181 Copynumber: 1.8 Consensus size: 180
6903922 CGAGGTCTTA
* * * * *
6903932 GAGATCATTCAAAGATTTAAGATTTTACTTAGAGTTCTTGGAGATCATTCAAAATTTTAAAATTT
1 GAGATCATTCAAAGATTTAAGATTTTACCTAGAGATCTTGGAAACCATTCAAAATTCTAAAATTT
* ** * * * ** ** *
6903997 TTCTTGAAAGTCTTTGAAAATCATTCAAAATTTAAAAATTTTGCTTGACGGTCTTAGAGATCCCT
66 TGCCCGAAAGTATTTGAAAATCATTAAAAATTTAAAAATTTTACCCGAAAGTCTTAGAGATCCAT
*
6904062 TAAAGATTTAAGATTTTGGTTAGAGATCTTGGAGTTCATTCAAAGATTTG
131 TAAAGATTGAAGATTTTGGTTAGAGATCTTGGAGTTCATTCAAAGATTTG
* * **
6904112 GAGATCATTCAAATATTTAAGATTTTGCCTAGAGATCTTGGAAACCA-TCTAAAATATCTAAGGT
1 GAGATCATTCAAAGATTTAAGATTTTACCTAGAGATCTTGGAAACCATTC-AAAAT-TCTAAAAT
*
6904176 TTTGCCCGAAAGTATTTGGAAATCATTGAAAAATTT-AAAATTTTACCCGAAAGTCTTAGAGAT-
64 TTTGCCCGAAAGTATTTGAAAATCATT-AAAAATTTAAAAATTTTACCCGAAAGTCTTAGAGATC
6904239 CATTCAAAGATTGAAGATTTT
128 CATT-AAAGATTGAAGATTTT
6904260 ATGAACAGAT
Statistics
Matches: 122, Mismatches: 22, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
179 2 0.02
180 49 0.40
181 64 0.52
182 7 0.06
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.37
Consensus pattern (180 bp):
GAGATCATTCAAAGATTTAAGATTTTACCTAGAGATCTTGGAAACCATTCAAAATTCTAAAATTT
TGCCCGAAAGTATTTGAAAATCATTAAAAATTTAAAAATTTTACCCGAAAGTCTTAGAGATCCAT
TAAAGATTGAAGATTTTGGTTAGAGATCTTGGAGTTCATTCAAAGATTTG
Found at i:6904651 original size:25 final size:25
Alignment explanation
Indices: 6904606--6904655 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
6904596 GCAAATATGC
*
6904606 AAATGTCTTTTTTAGAAGCAAATGT
1 AAATGTCTTTTCTAGAAGCAAATGT
*
6904631 AAATGTCTTTTCCT-GATGCAAATGT
1 AAATGTCTTTT-CTAGAAGCAAATGT
6904656 TCCATACAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (25 bp):
AAATGTCTTTTCTAGAAGCAAATGT
Found at i:6906261 original size:11 final size:9
Alignment explanation
Indices: 6906238--6906364 Score: 55
Period size: 9 Copynumber: 13.2 Consensus size: 9
6906228 TCTTCCCCTC
*
6906238 TTTTTCATT
1 TTTTTCTTT
**
6906247 TTTCCCTTT
1 TTTTTCTTT
6906256 TTTTTC-TT
1 TTTTTCTTT
*
6906264 TTTTT-TTA
1 TTTTTCTTT
*
6906272 TTTTTATTT
1 TTTTTCTTT
6906281 TTTTTCATTT
1 TTTTTC-TTT
6906291 TATCTTTCTCTCT
1 T-T-TTTCT-T-T
6906304 CTTTTGT-TTT
1 -TTTT-TCTTT
*
6906314 TTTTTC-TG
1 TTTTTCTTT
*
6906322 TTTTCCTTGT
1 TTTTTCTT-T
6906332 TCTTTTCATTT
1 T-TTTTC-TTT
6906343 TTTTTCTTT
1 TTTTTCTTT
6906352 TATCTTTCTTT
1 T-T-TTTCTTT
6906363 TT
1 TT
6906365 CTTTTTCTTT
Statistics
Matches: 90, Mismatches: 12, Indels: 31
0.68 0.09 0.23
Matches are distributed among these distances:
8 20 0.22
9 26 0.29
10 13 0.14
11 17 0.19
12 10 0.11
13 3 0.03
14 1 0.01
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.77
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:6906265 original size:6 final size:6
Alignment explanation
Indices: 6906236--6906374 Score: 53
Period size: 6 Copynumber: 22.8 Consensus size: 6
6906226 GTTCTTCCCC
** * *
6906236 TCTTTT TCATTTT TCCCTT T-TTTT TCTTTT T-TTTT ATTTTTAT TTTTTT
1 TCTTTT TC-TTTT TCTTTT TCTTTT TCTTTT TCTTTT -TCTTT-T TCTTTT
* *
6906285 TCATTTT ATCTTTCT CTCTCTTT T-GTTT T-TTTT TCTGTTT TCCTTGT
1 TC-TTTT -TCTTT-T -TCT-TTT TCTTTT TCTTTT TCT-TTT T-CTTTT
*
6906332 TC-TTT TC-ATT T-TTTT TCTTTT ATC--TT TCTTTT TCTTTT TCTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT -TCTTTT TCTTTT TCTTTT TCTTT
6906375 AAGTGGATTC
Statistics
Matches: 104, Mismatches: 12, Indels: 34
0.69 0.08 0.23
Matches are distributed among these distances:
4 2 0.02
5 27 0.26
6 32 0.31
7 31 0.30
8 10 0.10
9 2 0.02
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (6 bp):
TCTTTT
Found at i:6906365 original size:17 final size:16
Alignment explanation
Indices: 6906256--6906374 Score: 74
Period size: 16 Copynumber: 7.6 Consensus size: 16
6906246 TTTTCCCTTT
* *
6906256 TTTTTCTTTTTTTTTA
1 TTTTTCTTTCTTTTTC
*
6906272 TTTTTATTT-TTTTTC
1 TTTTTCTTTCTTTTTC
* *
6906287 ATTTTATCTTTCTCTCTC
1 -TTTT-TCTTTCTTTTTC
6906305 TTTTGT-TTT-TTTTTC
1 TTTT-TCTTTCTTTTTC
*
6906320 TGTTTTC---CTTGTTC
1 T-TTTTCTTTCTTTTTC
6906334 -TTTTCATTT-TTTTTC
1 TTTTTC-TTTCTTTTTC
6906349 TTTTATCTTTCTTTTTC
1 TTTT-TCTTTCTTTTTC
6906366 TTTTTCTTT
1 TTTTTCTTT
6906375 AAGTGGATTC
Statistics
Matches: 80, Mismatches: 10, Indels: 26
0.69 0.09 0.22
Matches are distributed among these distances:
12 5 0.06
14 5 0.06
15 16 0.20
16 29 0.36
17 21 0.26
18 4 0.05
ACGTcount: A:0.05, C:0.14, G:0.03, T:0.78
Consensus pattern (16 bp):
TTTTTCTTTCTTTTTC
Found at i:6906371 original size:33 final size:32
Alignment explanation
Indices: 6906193--6906371 Score: 101
Period size: 33 Copynumber: 5.6 Consensus size: 32
6906183 CAATCATTCA
*
6906193 TTTCTTTATTTTTC-TTTTCTATTTTTTTCTCTT
1 TTTCTTTCTTTTTCTTTTTC-ATTTTTTT-TCTT
* ***
6906226 GTTC-TTC-CCCTCTTTTTCATTTTTCCCTTT-TT
1 TTTCTTTCTTTTTCTTTTTCATTTTT---TTTCTT
* *
6906258 TTTCTTTTTTTTTATTTTT-ATTTTTTTTCATT
1 TTTCTTTCTTTTTCTTTTTCATTTTTTTTC-TT
* *
6906290 TTATCTTTCTCTCTCTTTTGT--TTTTTTTTCTGT
1 TT-TCTTTCTTTTTCTTTT-TCATTTTTTTTCT-T
*
6906323 TTTC---CTTGTTC-TTTTCATTTTTTTTCTT
1 TTTCTTTCTTTTTCTTTTTCATTTTTTTTCTT
6906351 TTATCTTTCTTTTTCTTTTTC
1 TT-TCTTTCTTTTTCTTTTTC
6906372 TTTAAGTGGA
Statistics
Matches: 109, Mismatches: 19, Indels: 36
0.66 0.12 0.22
Matches are distributed among these distances:
27 1 0.01
28 6 0.06
29 16 0.15
30 3 0.03
31 8 0.07
32 25 0.23
33 41 0.38
34 9 0.08
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (32 bp):
TTTCTTTCTTTTTCTTTTTCATTTTTTTTCTT
Found at i:6906810 original size:14 final size:13
Alignment explanation
Indices: 6906778--6906835 Score: 71
Period size: 14 Copynumber: 4.2 Consensus size: 13
6906768 TAATCAAGGA
*
6906778 TTATTTTTTTTTA
1 TTATTTTTTTTTT
*
6906791 TCATTTTTTATTTT
1 TTATTTTTT-TTTT
6906805 TTATTTTTTTTTT
1 TTATTTTTTTTTT
6906818 GTTATTTTGTTTTTT
1 -TTATTTT-TTTTTT
6906833 TTA
1 TTA
6906836 CATACCCCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
13 12 0.31
14 21 0.54
15 6 0.15
ACGTcount: A:0.12, C:0.02, G:0.03, T:0.83
Consensus pattern (13 bp):
TTATTTTTTTTTT
Found at i:6906815 original size:18 final size:19
Alignment explanation
Indices: 6906794--6906834 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
6906784 TTTTTTATCA
6906794 TTTTTTATT-TTTTATTTT
1 TTTTTTATTATTTTATTTT
* *
6906812 TTTTTTGTTATTTTGTTTT
1 TTTTTTATTATTTTATTTT
6906831 TTTT
1 TTTT
6906835 ACATACCCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.07, C:0.00, G:0.05, T:0.88
Consensus pattern (19 bp):
TTTTTTATTATTTTATTTT
Found at i:6907937 original size:18 final size:18
Alignment explanation
Indices: 6907916--6907956 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
6907906 TTTTATTTTG
6907916 TTTTTCCCTTATTTTTCA
1 TTTTTCCCTTATTTTTCA
* *
6907934 TTTTTCCTTTTTTTTTCA
1 TTTTTCCCTTATTTTTCA
6907952 TTTTT
1 TTTTT
6907957 TTTGTATTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTCCCTTATTTTTCA
Found at i:6907943 original size:45 final size:45
Alignment explanation
Indices: 6907894--6908041 Score: 115
Period size: 45 Copynumber: 3.1 Consensus size: 45
6907884 TTTTTAGTTA
6907894 CCTTTTTTATTTTTTTATTTTGTTT-TTCCCTTATTTTTCATTTTT
1 CCTTTTTT-TTTTTTTATTTTGTTTCTTCCCTTATTTTTCATTTTT
*
6907939 CCTTTTTTTTTCATTTT-TTTTGTATTCTT--CTTCTTTTTCATTTTCT
1 CCTTTTTTTTT--TTTTATTTTGT-TTCTTCCCTTATTTTTCATTTT-T
* * *
6907985 CGTTTCTTCTTTCTTTCTTTATTTTTTTTGTTCTCCTTATTCTTTTCATTTTT
1 C-CTT-TT-TTT-TTT-TTTATTTTGTTTCTTC-CCTTA-T-TTTTCATTTTT
6908038 CCTT
1 CCTT
6908042 CCCCTTTTCA
Statistics
Matches: 81, Mismatches: 6, Indels: 25
0.72 0.05 0.22
Matches are distributed among these distances:
44 3 0.04
45 28 0.35
46 8 0.10
47 4 0.05
48 3 0.04
49 10 0.12
50 7 0.09
52 5 0.06
53 3 0.04
54 10 0.12
ACGTcount: A:0.07, C:0.18, G:0.03, T:0.73
Consensus pattern (45 bp):
CCTTTTTTTTTTTTTATTTTGTTTCTTCCCTTATTTTTCATTTTT
Found at i:6907975 original size:27 final size:26
Alignment explanation
Indices: 6907945--6908037 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 26
6907935 TTTTCCTTTT
6907945 TTTTTCATTTTTTTTGTATTCTTCTTC
1 TTTTTCATTTTTTTTGT-TTCTTCTTC
* *
6907972 TTTTTCA-TTTTCTCGTTTCTTCTTTC
1 TTTTTCATTTTTTTTGTTTCTTC-TTC
* *
6907998 TTTCTTTATTTTTTTTGTTCTCCTTATTC
1 TTT-TTCATTTTTTTTGTT-T-CTTCTTC
6908027 -TTTTCATTTTT
1 TTTTTCATTTTT
6908038 CCTTCCCCTT
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
25 6 0.11
26 13 0.24
27 18 0.33
28 10 0.19
29 4 0.07
30 3 0.06
ACGTcount: A:0.06, C:0.17, G:0.03, T:0.73
Consensus pattern (26 bp):
TTTTTCATTTTTTTTGTTTCTTCTTC
Found at i:6908040 original size:19 final size:19
Alignment explanation
Indices: 6907916--6908057 Score: 55
Period size: 19 Copynumber: 7.3 Consensus size: 19
6907906 TTTTATTTTG
6907916 TTTTTCCCTTA-T-TTTTCA
1 TTTTT-CCTTATTCTTTTCA
*
6907934 TTTTTCCTT-TTTTTTTCA
1 TTTTTCCTTATTCTTTTCA
**
6907952 TTTTTTTTGTATTCTTCTTC-
1 TTTTTCCT-TATTCTT-TTCA
* * *
6907972 TTTTTCATTTTCTCGTTTCTTCT
1 TTTTTCCTTAT-TC--TT-TTCA
*
6907995 TTCTTTCTTTATT-TTTT--
1 TT-TTTCCTTATTCTTTTCA
6908012 TTGTTCTCCTTATTCTTTTCA
1 TT-TT-TCCTTATTCTTTTCA
***
6908033 TTTTTCCTTCCCCTTTTCA
1 TTTTTCCTTATTCTTTTCA
6908052 TTTTTC
1 TTTTTC
6908058 TTTTCATTTA
Statistics
Matches: 97, Mismatches: 13, Indels: 27
0.71 0.09 0.20
Matches are distributed among these distances:
17 9 0.09
18 24 0.25
19 27 0.28
20 16 0.16
21 5 0.05
22 6 0.06
23 3 0.03
24 7 0.07
ACGTcount: A:0.06, C:0.21, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTTCCTTATTCTTTTCA
Found at i:6908423 original size:21 final size:21
Alignment explanation
Indices: 6908384--6908424 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
6908374 TGAAGAATTT
**
6908384 TTTTTTGTTTGGGGTTTTCTC
1 TTTTTTGTTTGGGACTTTCTC
6908405 TTTTTTGTTTGGGACTTTCT
1 TTTTTTGTTTGGGACTTTCT
6908425 TTGAGCTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.10, G:0.22, T:0.66
Consensus pattern (21 bp):
TTTTTTGTTTGGGACTTTCTC
Found at i:6909272 original size:24 final size:23
Alignment explanation
Indices: 6909235--6909279 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
6909225 CACATTCATA
6909235 TTTTTTTTTCTCTTTTTTTTTGT
1 TTTTTTTTTCTCTTTTTTTTTGT
*
6909258 TTTTTTTTTATTCTTTTTTTTT
1 TTTTTTTTT-CTCTTTTTTTTT
6909280 ATTATTACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.02, C:0.07, G:0.02, T:0.89
Consensus pattern (23 bp):
TTTTTTTTTCTCTTTTTTTTTGT
Found at i:6909282 original size:13 final size:12
Alignment explanation
Indices: 6909235--6909279 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
6909225 CACATTCATA
*
6909235 TTTTTTTTTCTC
1 TTTTTTTTTTTC
6909247 TTTTTTTTTGTT-
1 TTTTTTTTT-TTC
*
6909259 TTTTTTTTATTC
1 TTTTTTTTTTTC
6909271 TTTTTTTTT
1 TTTTTTTTT
6909280 ATTATTACAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 2 0.07
12 25 0.89
13 1 0.04
ACGTcount: A:0.02, C:0.07, G:0.02, T:0.89
Consensus pattern (12 bp):
TTTTTTTTTTTC
Found at i:6909679 original size:9 final size:9
Alignment explanation
Indices: 6909659--6909701 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
6909649 TTTTCCCCCC
6909659 TTTTTTCATT
1 TTTTTTC-TT
6909669 TTTCTTT-TT
1 TTT-TTTCTT
*
6909678 TTTTTACTT
1 TTTTTTCTT
6909687 TTTTTTCTT
1 TTTTTTCTT
6909696 TTTTTT
1 TTTTTT
6909702 TCAAGTGGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
8 2 0.07
9 21 0.72
10 3 0.10
11 3 0.10
ACGTcount: A:0.05, C:0.09, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:6914773 original size:37 final size:37
Alignment explanation
Indices: 6914703--6914807 Score: 110
Period size: 37 Copynumber: 2.9 Consensus size: 37
6914693 AAAATATGTA
* * * *
6914703 ATGAAATGGAATGCATCTATTATCTAATGAGATATGC
1 ATGAAATGGAATGCATGTACTATCTATTAAGATATGC
*
6914740 ATGAGATGGAATGCATGTACTATCTATTAAGATA--C
1 ATGAAATGGAATGCATGTACTATCTATTAAGATATGC
*
6914775 ATGAAAAAT-G-ATGCATGTACTATTTATTAAGAT
1 ATG--AAATGGAATGCATGTACTATCTATTAAGAT
6914808 GCATGAGATA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
35 26 0.44
36 1 0.02
37 32 0.54
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (37 bp):
ATGAAATGGAATGCATGTACTATCTATTAAGATATGC
Found at i:6918660 original size:25 final size:26
Alignment explanation
Indices: 6918632--6918686 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 26
6918622 TTTTAGTCCA
* * *
6918632 TTTTTGTTGTTTTGT-TTTTTTCTCT
1 TTTTTGTTATTTTGTGATTTTTCACT
*
6918657 TTTTTTTTATTTTGTGATTTTTCACT
1 TTTTTGTTATTTTGTGATTTTTCACT
6918683 TTTT
1 TTTT
6918687 AATTAATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.05, C:0.07, G:0.09, T:0.78
Consensus pattern (26 bp):
TTTTTGTTATTTTGTGATTTTTCACT
Found at i:6919185 original size:12 final size:12
Alignment explanation
Indices: 6919163--6919193 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
6919153 TAAAGATTAA
6919163 TATTATAAAAAAT
1 TATT-TAAAAAAT
6919176 TATTTAAAAAAT
1 TATTTAAAAAAT
6919188 TATTTA
1 TATTTA
6919194 TAATTCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
TATTTAAAAAAT
Found at i:6919367 original size:19 final size:20
Alignment explanation
Indices: 6919329--6919371 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
6919319 GTAATGAAAT
*
6919329 ATTTTAATTTAATGATTTTG
1 ATTTTAATTTAATAATTTTG
*
6919349 ATTTTAATTT-TTAATTTTG
1 ATTTTAATTTAATAATTTTG
6919368 ATTT
1 ATTT
6919372 ACCTATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (20 bp):
ATTTTAATTTAATAATTTTG
Found at i:6920154 original size:17 final size:17
Alignment explanation
Indices: 6920115--6920155 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
6920105 AATCAATTTT
* *
6920115 AAATAAA-TAAAATTTA
1 AAATAAATTAAAAATAA
6920131 AAA-AAATTAAAAATAA
1 AAATAAATTAAAAATAA
6920147 AAATAAATT
1 AAATAAATT
6920156 TTAAAACTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 3 0.14
16 13 0.62
17 5 0.24
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AAATAAATTAAAAATAA
Found at i:6923816 original size:17 final size:15
Alignment explanation
Indices: 6923794--6923840 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 15
6923784 CTCTTTTCAT
6923794 AAAAAAACAAAAAAA
1 AAAAAAACAAAAAAA
6923809 CGAAAAAAACAAAAACAA
1 --AAAAAAACAAAAA-AA
*
6923827 AAAAAAAGAAAAAA
1 AAAAAAACAAAAAA
6923841 TAATGAATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 1 0.04
16 12 0.43
17 13 0.46
18 2 0.07
ACGTcount: A:0.87, C:0.09, G:0.04, T:0.00
Consensus pattern (15 bp):
AAAAAAACAAAAAAA
Found at i:6923822 original size:23 final size:24
Alignment explanation
Indices: 6923796--6923840 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
6923786 CTTTTCATAA
*
6923796 AAAAAC-AAAAAAACGAAAAAAAC
1 AAAAACAAAAAAAAAGAAAAAAAC
6923819 AAAAACAAAAAAAAAGAAAAAA
1 AAAAACAAAAAAAAAGAAAAAA
6923841 TAATGAATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.87, C:0.09, G:0.04, T:0.00
Consensus pattern (24 bp):
AAAAACAAAAAAAAAGAAAAAAAC
Found at i:6928816 original size:12 final size:11
Alignment explanation
Indices: 6928789--6928823 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
6928779 ATAAAAAACG
6928789 AAAATAATACA
1 AAAATAATACA
*
6928800 AAAATATATATA
1 AAAATA-ATACA
6928812 AAAATAATACA
1 AAAATAATACA
6928823 A
1 A
6928824 TTTAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAATAATACA
Found at i:6937870 original size:2 final size:2
Alignment explanation
Indices: 6937863--6937894 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
6937853 TTAAGTTCAA
*
6937863 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6937895 TAAGCATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6942531 original size:40 final size:38
Alignment explanation
Indices: 6942485--6942631 Score: 132
Period size: 40 Copynumber: 3.7 Consensus size: 38
6942475 AGGTTTTTAA
*
6942485 AAATCATTGAAAAATTTAAAATTTTGCCTGAAGGTCTTG
1 AAATCATTCAAAAATTTAAAATTTTGCC-GAAGGTCTTG
* * *
6942524 AATATCATTCAAAGATTTAAGATTTTGCCCGAAAGTCTTG
1 AA-ATCATTCAAAAATTTAAAATTTTG-CCGAAGGTCTTG
* * * * * *
6942564 AAAATTATGTAAAAAATCTAAAGTTTTTCCCAGAGGTCTTTGG
1 -AAATCAT-TCAAAAATTTAAAATTTTGCCGA-AGGTC-TT-G
6942607 AAATCATTCAAAAATTTAAAATTTT
1 AAATCATTCAAAAATTTAAAATTTT
6942632 ACTCAAAAGG
Statistics
Matches: 84, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
39 2 0.02
40 37 0.44
41 36 0.43
42 8 0.10
43 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (38 bp):
AAATCATTCAAAAATTTAAAATTTTGCCGAAGGTCTTG
Found at i:6942735 original size:40 final size:40
Alignment explanation
Indices: 6942484--6942738 Score: 181
Period size: 41 Copynumber: 6.2 Consensus size: 40
6942474 GAGGTTTTTA
* **
6942484 AAAATCATTGAAAAATTTAAAATTTTGCCTGAAGGTCTTG
1 AAAATCATTCAAAAATTTAAAATTTTGCCCAAAGGTCTTG
* * *
6942524 AATATCATTCAAAGATTTAAGATTTTGCCCGAAA-GTCTTG
1 AAAATCATTCAAAAATTTAAAATTTTGCCC-AAAGGTCTTG
* * * * * *
6942564 AAAATTATGTAAAAAATCTAAAGTTTTTCCCAGAGGTCTTTG
1 AAAATCAT-TCAAAAATTTAAAATTTTGCCCAAAGGTC-TTG
* * * *
6942606 GAAATCATTCAAAAATTTAAAATTTTACTCAAAAGGT-TTT
1 AAAATCATTCAAAAATTTAAAATTTTGC-CCAAAGGTCTTG
* ** * ** * *
6942646 AAAGATCATGTAAAAAGAAACTGAGGTTTTGTCCAAAGGTTTTTG
1 AAA-ATCAT-T-CAAA-AATTTAAAATTTTGCCCAAAGG-TCTTG
* *
6942691 AAAATCATTCAAAATTTTAAAATATTGCCCAAAGGTCTTG
1 AAAATCATTCAAAAATTTAAAATTTTGCCCAAAGGTCTTG
6942731 AAAATCAT
1 AAAATCAT
6942739 GTACTCATTT
Statistics
Matches: 159, Mismatches: 45, Indels: 22
0.70 0.20 0.10
Matches are distributed among these distances:
40 55 0.35
41 56 0.35
42 19 0.12
43 10 0.06
44 14 0.09
45 5 0.03
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (40 bp):
AAAATCATTCAAAAATTTAAAATTTTGCCCAAAGGTCTTG
Found at i:6944323 original size:11 final size:12
Alignment explanation
Indices: 6944307--6944360 Score: 60
Period size: 14 Copynumber: 4.5 Consensus size: 12
6944297 TTTATCTTTC
6944307 TTTTTTCTCT-T
1 TTTTTTCTCTAT
6944318 TTTTTTCTCTCAT
1 TTTTTTCTCT-AT
6944331 TTTTTTCTTCTCAT
1 TTTTTTC-TCT-AT
6944345 TTTTTT-T-TAT
1 TTTTTTCTCTAT
6944355 TTTTTT
1 TTTTTT
6944361 TTTCAAATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
10 8 0.20
11 11 0.28
12 1 0.03
13 8 0.20
14 12 0.30
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTTTCTCTAT
Found at i:6944323 original size:13 final size:13
Alignment explanation
Indices: 6944301--6944363 Score: 65
Period size: 13 Copynumber: 4.8 Consensus size: 13
6944291 ACCACATTTA
*
6944301 TCTTTCTTTTTTC
1 TCTTTTTTTTTTC
*
6944314 TCTTTTTTTTCTC
1 TCTTTTTTTTTTC
*
6944327 TCATTTTTTTCTTC
1 TC-TTTTTTTTTTC
* *
6944341 TCATTTTTTTTTA
1 TCTTTTTTTTTTC
6944354 T-TTTTTTTTT
1 TCTTTTTTTTT
6944364 CAAATTTCTA
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
12 8 0.20
13 22 0.54
14 11 0.27
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (13 bp):
TCTTTTTTTTTTC
Found at i:6944356 original size:24 final size:24
Alignment explanation
Indices: 6944297--6944360 Score: 65
Period size: 27 Copynumber: 2.5 Consensus size: 24
6944287 TAAAACCACA
* *
6944297 TTTATCTTTCTTTTTTCTCTTTTTTT
1 TTTAT-TTT-TTTCTTCTCATTTTTT
6944323 TCTCTCATTTTTTTCTTCTCATTTTTT
1 T-T-T-ATTTTTTTCTTCTCATTTTTT
6944350 TTTATTTTTTT
1 TTTATTTTTTT
6944361 TTTCAAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
24 8 0.24
25 1 0.03
26 2 0.06
27 16 0.48
28 4 0.12
29 2 0.06
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTATTTTTTTCTTCTCATTTTTT
Found at i:6944844 original size:54 final size:53
Alignment explanation
Indices: 6944736--6944861 Score: 200
Period size: 54 Copynumber: 2.4 Consensus size: 53
6944726 CATGATATAG
*
6944736 ATGCAAGTGATGCAAATGCGAATATCTTTCTTATGATGTAAATGCAAATGCGA
1 ATGCAAGTGATGCAAATGCGAATATCTTTCTTATGATGTAAATGCAAATACGA
* *
6944789 ATGCAAGTAATGCAAATGTGAATATCCATTT-TTATGATGTAAATGCAAATACGA
1 ATGCAAGTGATGCAAATGCGAATAT-C-TTTCTTATGATGTAAATGCAAATACGA
6944843 ATGCAAGTGATGCAAATGC
1 ATGCAAGTGATGCAAATGC
6944862 AAAATATATA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
53 23 0.35
54 40 0.61
55 3 0.05
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (53 bp):
ATGCAAGTGATGCAAATGCGAATATCTTTCTTATGATGTAAATGCAAATACGA
Found at i:6944853 original size:27 final size:27
Alignment explanation
Indices: 6944769--6944864 Score: 77
Period size: 27 Copynumber: 3.6 Consensus size: 27
6944759 ATCTTTCTTA
* *
6944769 TGATGTAAATGCAAATGCGAATGCAAG
1 TGATGCAAATGCAAATACGAATGCAAG
* ** * * ***
6944796 TAATGCAAATGTGAATATCCATTTTTA-
1 TGATGCAAATGCAAATA-CGAATGCAAG
*
6944823 TGATGTAAATGCAAATACGAATGCAAG
1 TGATGCAAATGCAAATACGAATGCAAG
6944850 TGATGCAAATGCAAA
1 TGATGCAAATGCAAA
6944865 ATATATATAT
Statistics
Matches: 47, Mismatches: 20, Indels: 4
0.66 0.28 0.06
Matches are distributed among these distances:
26 4 0.09
27 39 0.83
28 4 0.09
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.27
Consensus pattern (27 bp):
TGATGCAAATGCAAATACGAATGCAAG
Found at i:6945190 original size:83 final size:83
Alignment explanation
Indices: 6945103--6945277 Score: 235
Period size: 83 Copynumber: 2.1 Consensus size: 83
6945093 GCAAATATAA
* * * * * *
6945103 TTTTTTTCAGCATGTAGATCAAATTTCTTTCTCATGATATAAATGTGAATGTGGATACAAGTTAT
1 TTTTTTTTAGCATATAGATCAAATATCTTTCTCATGATATAAATGTGAATGCGAATACAAGTGAT
* *
6945168 GCAATTATGAATA-TCTT
66 GCAAATACGAATACTCTT
* *
6945185 TTTTTTTGTAGCATATAGATTAAATATCTTTCTCATGATGTAAATGTGAATGCGAATACAAGTGA
1 TTTTTTT-TAGCATATAGATCAAATATCTTTCTCATGATATAAATGTGAATGCGAATACAAGTGA
6945250 TGCAAATACGAATACTCTT
65 TGCAAATACGAATACTCTT
6945269 TTTTGTTTT
1 TTTT-TTTT
6945278 TTTTAAAGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
82 7 0.09
83 61 0.76
84 9 0.11
85 3 0.04
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (83 bp):
TTTTTTTTAGCATATAGATCAAATATCTTTCTCATGATATAAATGTGAATGCGAATACAAGTGAT
GCAAATACGAATACTCTT
Found at i:6946792 original size:97 final size:98
Alignment explanation
Indices: 6946623--6946803 Score: 278
Period size: 97 Copynumber: 1.9 Consensus size: 98
6946613 CAATTTTAGC
*
6946623 ATTCTGCTTTCTTAAATTATATCTTCTTTTTTTCTTGAAATTCTAACTAAATCTTTATTCACTTT
1 ATTCTGCTTTCTTAAATTATATCTTCTTTTTTTCTTGAAATTCTAACTAAATCTTTATTCACATT
6946688 TTATCCTAGA-TTCTCATCTCTGAGGTGTATAGT
66 TTATCCTAGACTT-TCATCTCTGAGGTGTATAGT
* * *
6946721 ATTCTGCTTTCTTAAATTTTATCTTC-TTTTTTCTTGAGATTCTGACTGAAA-CTTTATTCACAT
1 ATTCTGCTTTCTTAAATTATATCTTCTTTTTTTCTTGAAATTCTAACT-AAATCTTTATTCACAT
*
6946784 TTTGTCCTAGACTTTCATCT
65 TTTATCCTAGACTTTCATCT
6946804 TCAAGATACA
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
97 46 0.61
98 30 0.39
ACGTcount: A:0.22, C:0.18, G:0.08, T:0.51
Consensus pattern (98 bp):
ATTCTGCTTTCTTAAATTATATCTTCTTTTTTTCTTGAAATTCTAACTAAATCTTTATTCACATT
TTATCCTAGACTTTCATCTCTGAGGTGTATAGT
Found at i:6946933 original size:248 final size:248
Alignment explanation
Indices: 6946487--6946969 Score: 672
Period size: 248 Copynumber: 1.9 Consensus size: 248
6946477 TACTTTTTTG
* * *
6946487 AATTCTATCTTCGTTTTTCTTGGGATTCTAACTAAAATTTTATTCACTTTTTACCTTGAACTCTT
1 AATTCTATCTTCGTTTTTCTTGAGATTCTAACTAAAACTTTATTCACTTTTTACCTAGAACTCTT
* * * *
6946552 ATCTCCAAGGTGCATATCTTTTTTTCTTTGCCTTTTTCTTTTCTTTGGAAACATTTGACTTCAAT
66 ATCTCCAAGATACATATCTTTTTTTCTTTGACTCTTTCTTTTCTTTGGAAACATTTGACTTCAAT
* *
6946617 TTTAGCATTCTGCTTTCTTAAATTATATCTTCTTTTTTTCTTGAAATTCTAACTAAATCTTTATT
131 TTTAGCATTCTGCTTTCTTAAATTATATCTTCTTTTTTTCTTGAAATTCTAACTAAAACTTCATT
* * *
6946682 CACTTTTT-ATCCTAGATTCTCATCTCTGAGGTGTATAGTATTCTGCTTTCTTA
196 CACTTTTTGCT-CTAGACTCTCATCTCTGAGATGTATAGTATTCTGCTTTCTTA
* * * *
6946735 AATTTTATCTTCTTTTTTCTTGAGATTCTGACTGAAACTTTATTCACATTTTGT-CCTAG-ACT-
1 AATTCTATCTTCGTTTTTCTTGAGATTCTAACTAAAACTTTATTCAC-TTTT-TACCTAGAACTC
* * *
6946797 TTCATCTTCAAGATACATGTCTTTTGTTTCTTT-ACTCTTTCTTTTCTTTGGAAATATTTGACTT
64 TT-ATCTCCAAGATACATATCTTTT-TTTCTTTGACTCTTTCTTTTCTTTGGAAACATTTGACTT
*
6946861 CAATTTTAGCA-TCTGCTTTCTTAAATTCTATCTTCTTTTTTTACTTGAAATTCTAACTAAAACT
127 CAATTTTAGCATTCTGCTTTCTTAAATTATATCTTCTTTTTTT-CTTGAAATTCTAACTAAAACT
* *
6946925 TCATTCACTTTTTGCTTTAGACTCTCATCTTTGAGATGTATAGTA
191 TCATTCACTTTTTGCTCTAGACTCTCATCTCTGAGATGTATAGTA
6946970 GACGCTCTCA
Statistics
Matches: 207, Mismatches: 22, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
247 32 0.15
248 158 0.76
249 16 0.08
250 1 0.00
ACGTcount: A:0.22, C:0.18, G:0.09, T:0.51
Consensus pattern (248 bp):
AATTCTATCTTCGTTTTTCTTGAGATTCTAACTAAAACTTTATTCACTTTTTACCTAGAACTCTT
ATCTCCAAGATACATATCTTTTTTTCTTTGACTCTTTCTTTTCTTTGGAAACATTTGACTTCAAT
TTTAGCATTCTGCTTTCTTAAATTATATCTTCTTTTTTTCTTGAAATTCTAACTAAAACTTCATT
CACTTTTTGCTCTAGACTCTCATCTCTGAGATGTATAGTATTCTGCTTTCTTA
Found at i:6949219 original size:17 final size:18
Alignment explanation
Indices: 6949188--6949227 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
6949178 TTTTTATTTC
*
6949188 TCTTTTTTTTCCTTCTTT
1 TCTTATTTTTCCTTCTTT
6949206 TCTTATTTTT-CTTCTTT
1 TCTTATTTTTCCTTCTTT
6949223 TCTTA
1 TCTTA
6949228 GCTTCTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (18 bp):
TCTTATTTTTCCTTCTTT
Found at i:6952726 original size:16 final size:16
Alignment explanation
Indices: 6952707--6952755 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
6952697 TTCTCCTCCT
6952707 TTTTTTTTCCTTTTTC
1 TTTTTTTTCCTTTTTC
*
6952723 TTTTTTTT-CTTTCT-
1 TTTTTTTTCCTTTTTC
6952737 TTTTTTTTCTCTTTCTTC
1 TTTTTTTTC-CTTT-TTC
6952755 T
1 T
6952756 CTTTCCATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
14 8 0.30
15 5 0.19
16 12 0.44
17 1 0.04
18 1 0.04
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTTTTCCTTTTTC
Found at i:6952735 original size:13 final size:13
Alignment explanation
Indices: 6952719--6952743 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6952709 TTTTTTCCTT
6952719 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
6952732 TTTCTTTTTTTT
1 TTTCTTTTTTTT
6952744 TCTCTTTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTCTTTTTTTTC
Found at i:6952742 original size:14 final size:14
Alignment explanation
Indices: 6952705--6952746 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
6952695 ATTTCTCCTC
6952705 CTTTTTTTTTCCTTT
1 CTTTTTTTTT-CTTT
*
6952720 TTCTTTTTTTTCTTT
1 CT-TTTTTTTTCTTT
6952735 CTTTTTTTTTCT
1 CTTTTTTTTTCT
6952747 CTTTCTTCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 10 0.42
15 6 0.25
16 8 0.33
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
CTTTTTTTTTCTTT
Found at i:6958123 original size:63 final size:64
Alignment explanation
Indices: 6958043--6958304 Score: 188
Period size: 66 Copynumber: 4.2 Consensus size: 64
6958033 TAGAAACGTA
* *
6958043 TTGAATAA-CCTCATTCAATTTTTTATAAGAGATTATTAAAGGCATTTTTTGGTTAAAAATATC
1 TTGAATAATCCTCTTTCAATTTTTTATAAGAGATTATTAAAGGCATTTTTTGGTCAAAAATATC
* * * * * *
6958106 TTGAATAATCCTC-TTCAATTTTTAATTGAA-ATGGATTATTCAAGGTATTTTTTGCTAAAAAAG
1 TTGAATAATCCTCTTTCAATTTTTTA-T-AAGA--GATTATTAAAGGCATTTTTTGGTCAAAAAT
**
6958169 GGC
62 ATC
* * *
6958172 TTTAATAAT-TTCTTTTAATTTTTT-T--GAGATTATTCAAA-GCA-TTTTTGG-CAAAAA-ATG
1 TTGAATAATCCTCTTTCAATTTTTTATAAGAGATTATT-AAAGGCATTTTTTGGTCAAAAATAT-
6958229 C
64 C
* * * * * * * *
6958230 ATTGAATAAT-CTCTTTTAATTTTTTGTAAGAAATTATTCAAGGTATTTTCTGGCCAAAAATACC
1 -TTGAATAATCCTCTTTCAATTTTTTATAAGAGATTATTAAAGGCATTTTTTGGTCAAAAATATC
6958294 TTGAATAATCC
1 TTGAATAATCC
6958305 CAAAAAAAAT
Statistics
Matches: 156, Mismatches: 25, Indels: 35
0.72 0.12 0.16
Matches are distributed among these distances:
58 6 0.04
59 28 0.18
60 10 0.06
61 4 0.03
62 11 0.07
63 34 0.22
64 15 0.10
65 5 0.03
66 43 0.28
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (64 bp):
TTGAATAATCCTCTTTCAATTTTTTATAAGAGATTATTAAAGGCATTTTTTGGTCAAAAATATC
Found at i:6958225 original size:59 final size:60
Alignment explanation
Indices: 6958139--6958254 Score: 155
Period size: 59 Copynumber: 1.9 Consensus size: 60
6958129 AATTGAAATG
* * * * *
6958139 GATTATTCAAGGTATTTTTTGCTAAAAAAGGGC-TTTAATAATTTCTTTTAATTTTTTTGA
1 GATTATTCAAAGCATTTTTGGCTAAAAAA-GGCATTGAATAATCTCTTTTAATTTTTTTGA
*
6958199 GATTATTCAAAGCATTTTTGGC-AAAAAATGCATTGAATAATCTCTTTTAATTTTTT
1 GATTATTCAAAGCATTTTTGGCTAAAAAAGGCATTGAATAATCTCTTTTAATTTTTT
6958255 GTAAGAAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
58 2 0.04
59 28 0.57
60 19 0.39
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.47
Consensus pattern (60 bp):
GATTATTCAAAGCATTTTTGGCTAAAAAAGGCATTGAATAATCTCTTTTAATTTTTTTGA
Found at i:6958332 original size:61 final size:59
Alignment explanation
Indices: 6958257--6958629 Score: 186
Period size: 61 Copynumber: 6.2 Consensus size: 59
6958247 AATTTTTTGT
* *
6958257 AAGA-AATTATTCAAGGTATTTTCTGGCCAAAAATACCTTGAATAATCCCAAAAAAAATAA
1 AAGAGAATTATTCAAGGCATTTT-TGGCCAAAAATACCTTGAATAATCCC-AAAAAAATTA
* * * ** * *
6958317 AAGAGAATTATTCAAGGCATTTTTGGCTAGAAACACCTTGAATAATTTCTAAAAAATTT
1 AAGAGAATTATTCAAGGCATTTTTGGCCAAAAATACCTTGAATAATCCCAAAAAAATTA
* * * * *
6958376 TAGAGGAGATTATTGATGGCATTTTTGGTCAAAAATACCTTAAATAATCCTCCAAAAAAATTA
1 AAGA-GA-ATTATTCAAGGCATTTTTGGCCAAAAATACCTTGAATAAT-C-CCAAAAAAATTA
** * * * ** * * * **** *
6958439 AAG-G--GGATTCAAAGCCTTTTTTGTTAGAAATACCTTGAATAAACTCATTCAATTTTTTGT
1 AAGAGAATTATTCAAGGCATTTTTGGCCAAAAATACCTTGAATAATCCCA---AAAAAATT-A
* * * * *
6958499 AAGAG-ATTATTCAAGGCATTTTCTAGTCAAAAACATCTTGAATAAT-CCAAAAAAATGA
1 AAGAGAATTATTCAAGGCATTTT-TGGCCAAAAATACCTTGAATAATCCCAAAAAAATTA
* * * * ** * *
6958557 TAGAGGATTATTAAAGGTATTTTT-TACAGAAAATACCTTGAATAATCCCCCAAAAAATAGA
1 AAGAGAATTATTCAAGGCATTTTTGGCCA-AAAATACCTTGAATAAT-CCCAAAAAAAT-TA
6958618 AAGAGAA-TATTC
1 AAGAGAATTATTC
6958630 TAGGTGTTTG
Statistics
Matches: 229, Mismatches: 67, Indels: 34
0.69 0.20 0.10
Matches are distributed among these distances:
56 2 0.01
57 3 0.01
58 48 0.21
59 32 0.14
60 43 0.19
61 59 0.26
62 14 0.06
63 28 0.12
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.31
Consensus pattern (59 bp):
AAGAGAATTATTCAAGGCATTTTTGGCCAAAAATACCTTGAATAATCCCAAAAAAATTA
Found at i:6958528 original size:121 final size:121
Alignment explanation
Indices: 6958203--6958553 Score: 343
Period size: 119 Copynumber: 2.9 Consensus size: 121
6958193 TTTTGAGATT
* * ** * * *
6958203 ATTCAAAGCATTTTTGGCAAAAAATGCATTGAATAATCTCTTTTAATTTTTTGTAAGAAATTATT
1 ATTCAAAGCATTTTTGGCTAGAAACACCTTGAATAATCTC-TTAAATTTTTTGTAAGAGATTATT
* * **
6958268 CAAGGTATTTTCTGGCCAAAAATACCTTGAATAATCCCAAAAAAAATAAAAGAGAATT
65 CAAGGCATTTTCTGGTCAAAAATACCTTGAATAATCCCAAAAAAAATAAAAGAG-AGG
* * * * * *
6958326 ATTCAAGGCATTTTTGGCTAGAAACACCTTGAATAATTTCTAAAAAATTTTAG-AGGAGATTATT
1 ATTCAAAGCATTTTTGGCTAGAAACACCTTGAATAATCTCT-TAAATTTTTTGTAAGAGATTATT
* * * * *
6958390 GATGGCATTTT-TGGTCAAAAATACCTTAAATAATCCTCCAAAAAAATTAAAG-G-GG
65 CAAGGCATTTTCTGGTCAAAAATACCTTGAATAATCC-CAAAAAAAATAAAAGAGAGG
* * * * * *
6958445 ATTCAAAGCCTTTTTTGTTAGAAATACCTTGAATAAACTCATTCAATTTTTTGTAAGAGATTATT
1 ATTCAAAGCATTTTTGGCTAGAAACACCTTGAATAATCTC-TTAAATTTTTTGTAAGAGATTATT
* * *
6958510 CAAGGCATTTTCTAGTCAAAAACATCTTGAATAAT-CCAAAAAAA
65 CAAGGCATTTTCTGGTCAAAAATACCTTGAATAATCCCAAAAAAA
6958554 TGATAGAGGA
Statistics
Matches: 182, Mismatches: 41, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
119 47 0.26
120 21 0.12
121 43 0.24
122 31 0.17
123 40 0.22
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (121 bp):
ATTCAAAGCATTTTTGGCTAGAAACACCTTGAATAATCTCTTAAATTTTTTGTAAGAGATTATTC
AAGGCATTTTCTGGTCAAAAATACCTTGAATAATCCCAAAAAAAATAAAAGAGAGG
Found at i:6958596 original size:121 final size:118
Alignment explanation
Indices: 6958231--6958603 Score: 324
Period size: 121 Copynumber: 3.1 Consensus size: 118
6958221 AAAAAATGCA
* * * *
6958231 TTGAATAATCTCTTTTAATTTTTTGTAAGAAATTATTCAAGGTATTTTCTGGCCAAAAATACCTT
1 TTGAATAATCTC-TTAAATTTTTTGTAAGAGATTATTCAAGGCATTTTCTGGTCAAAAATACCTT
* * * * *
6958296 GAATAATCCCAAAAAAAATAAAAGAGAATTATTCAAGGCATTTTTGGCTAGAAACACC
65 GAATAAT-CC-AAAAAAATAAAAGAGGATTATTAAAGGTATTTTT-TC-AGAAATACC
* * * * * * *
6958354 TTGAATAATTTCTAAAAAATTTTAG-AGGAGATTATTGATGGCATTTT-TGGTCAAAAATACCTT
1 TTGAATAATCTCT-TAAATTTTTTGTAAGAGATTATTCAAGGCATTTTCTGGTCAAAAATACCTT
* * * * * *
6958417 AAATAATCCTCCAAAAAAATTAAAGGGGA-T-TCAAAGCCT-TTTTTGTTAGAAATACC
65 GAATAA---TCCAAAAAAATAAAAGAGGATTATTAAAG-GTATTTTT-TCAGAAATACC
* * * * *
6958473 TTGAATAAACTCATTCAATTTTTTGTAAGAGATTATTCAAGGCATTTTCTAGTCAAAAACATCTT
1 TTGAATAATCTC-TTAAATTTTTTGTAAGAGATTATTCAAGGCATTTTCTGGTCAAAAATACCTT
* *
6958538 GAATAATCCAAAAAAATGATAGAGGATTATTAAAGGTATTTTTTACAGAAAATACC
65 GAATAATCCAAAAAAATAAAAGAGGATTATTAAAGGTATTTTTT-CAG-AAATACC
6958594 TTGAATAATC
1 TTGAATAATC
6958604 CCCCAAAAAA
Statistics
Matches: 195, Mismatches: 42, Indels: 28
0.74 0.16 0.11
Matches are distributed among these distances:
118 17 0.09
119 28 0.14
120 42 0.22
121 55 0.28
122 32 0.16
123 20 0.10
124 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (118 bp):
TTGAATAATCTCTTAAATTTTTTGTAAGAGATTATTCAAGGCATTTTCTGGTCAAAAATACCTTG
AATAATCCAAAAAAATAAAAGAGGATTATTAAAGGTATTTTTTCAGAAATACC
Found at i:6958881 original size:62 final size:62
Alignment explanation
Indices: 6958812--6958981 Score: 179
Period size: 60 Copynumber: 2.8 Consensus size: 62
6958802 AATTTTTAGT
* **
6958812 AAGGGATTATTTAAAGTATTTTTTGGCAAAAAAATACCTTAAATAAT-CTCTAAAAAAAATGA
1 AAGGGATTATTTAAGGTATTTTTTAACAAAAAAATACCTTAAATAATCCT-TAAAAAAAATGA
* * * *
6958874 AAGGGATT-TTTCAAGGTA-TTTTTAAC-CAAAAACACTTTAAATAATCCTTAAAAAAATTGA
1 AAGGGATTATTT-AAGGTATTTTTTAACAAAAAAATACCTTAAATAATCCTTAAAAAAAATGA
* * * *
6958934 AAGAGATTATTGAAGGTA-TTTTTAATAAAAAAAATACCTTTAATAATC
1 AAGGGATTATTTAAGGTATTTTTTAA-CAAAAAAATACCTTAAATAATC
6958982 ACATTTTTCT
Statistics
Matches: 89, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
60 47 0.53
61 13 0.15
62 29 0.33
ACGTcount: A:0.47, C:0.09, G:0.11, T:0.34
Consensus pattern (62 bp):
AAGGGATTATTTAAGGTATTTTTTAACAAAAAAATACCTTAAATAATCCTTAAAAAAAATGA
Found at i:6960074 original size:34 final size:34
Alignment explanation
Indices: 6960035--6960128 Score: 118
Period size: 34 Copynumber: 2.8 Consensus size: 34
6960025 TAGTACTTTC
* *
6960035 TACTATAAATGTTATTAAATTTAGTGATATTTTT
1 TACTATAAATGTTATTAAATTTAATGATATTTTA
* * *
6960069 TACTATAAACGTCACTAAATTTAATGATATTTTA
1 TACTATAAATGTTATTAAATTTAATGATATTTTA
* *
6960103 TAATAAAAATGTTATTAAA-TTAATGA
1 TACTATAAATGTTATTAAATTTAATGA
6960129 CGTTTTATTA
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 7 0.14
34 43 0.86
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (34 bp):
TACTATAAATGTTATTAAATTTAATGATATTTTA
Found at i:6960135 original size:33 final size:33
Alignment explanation
Indices: 6960041--6960178 Score: 105
Period size: 33 Copynumber: 4.1 Consensus size: 33
6960031 TTTCTACTAT
* * * * * *
6960041 AAATGTTATTAAATTTAGTGATATTTTTTACTAT
1 AAATGTCATTAAA-TTAATGACATTTTATAATAA
* * *
6960075 AAACGTCACTAAATTTAATGATATTTTATAATAA
1 AAATGTCATTAAA-TTAATGACATTTTATAATAA
* * *
6960109 AAATGTTATTAAATTAATGACGTTTTATTATAA
1 AAATGTCATTAAATTAATGACATTTTATAATAA
* * * * *
6960142 AAACGTCATTAAGTTAGTGGCATTTTATCATAA
1 AAATGTCATTAAATTAATGACATTTTATAATAA
6960175 AAAT
1 AAAT
6960179 ACTGCTAAGT
Statistics
Matches: 83, Mismatches: 21, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
33 46 0.55
34 37 0.45
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (33 bp):
AAATGTCATTAAATTAATGACATTTTATAATAA
Found at i:6960905 original size:16 final size:16
Alignment explanation
Indices: 6960866--6960904 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
6960856 ATTTTAAAAA
6960866 ATAATTTTAATAATTT
1 ATAATTTTAATAATTT
6960882 -TAAATTTTAAT-ATTT
1 AT-AATTTTAATAATTT
6960897 ATAATTTT
1 ATAATTTT
6960905 TTTTATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
ATAATTTTAATAATTT
Found at i:6961615 original size:2 final size:2
Alignment explanation
Indices: 6961608--6961636 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
6961598 GTATAAATAA
6961608 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6961637 GGAAAACTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:6963343 original size:17 final size:18
Alignment explanation
Indices: 6963309--6963342 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
6963299 TTTAAATCAC
6963309 ATCATTTTTAAATTTTTT
1 ATCATTTTTAAATTTTTT
6963327 ATCA-TTTT-AATTTTTT
1 ATCATTTTTAAATTTTTT
6963343 TTATTACAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 4 0.25
18 4 0.25
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (18 bp):
ATCATTTTTAAATTTTTT
Found at i:6967194 original size:12 final size:12
Alignment explanation
Indices: 6967179--6967203 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6967169 AAAGTTACTC
6967179 TACAAGTTGATA
1 TACAAGTTGATA
6967191 TACAAGTTGATA
1 TACAAGTTGATA
6967203 T
1 T
6967204 GTAAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (12 bp):
TACAAGTTGATA
Found at i:6967621 original size:20 final size:20
Alignment explanation
Indices: 6967579--6967622 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
6967569 ATTTTTAATT
* *
6967579 TTTTAATATTTTATATATTA
1 TTTTAATATTTTAAATATGA
6967599 TTTTAATATATTTAAATA-GA
1 TTTTAATAT-TTTAAATATGA
6967619 TTTT
1 TTTT
6967623 GAAATAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTTAATATTTTAAATATGA
Found at i:6967671 original size:19 final size:19
Alignment explanation
Indices: 6967647--6967686 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
6967637 TTTTTAATTT
**
6967647 TATAAAAATTTAAAATATA
1 TATAAAAATAAAAAATATA
*
6967666 TATAAAACTAAAAAATATA
1 TATAAAAATAAAAAATATA
6967685 TA
1 TA
6967687 ATTCAAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
TATAAAAATAAAAAATATA
Found at i:6967754 original size:13 final size:13
Alignment explanation
Indices: 6967734--6967768 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
6967724 AATCTTATTC
6967734 AAATTTAATATAT
1 AAATTTAATATAT
* *
6967747 ACATTTAATATCT
1 AAATTTAATATAT
6967760 AAATTTAAT
1 AAATTTAAT
6967769 TTAAATTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTTAATATAT
Found at i:6968710 original size:20 final size:20
Alignment explanation
Indices: 6968687--6968727 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
6968677 TATTAATTTA
6968687 ATAAAAATAATA-AATATAAC
1 ATAAAAA-AATATAATATAAC
6968707 ATAAAAAAATATAATATAAC
1 ATAAAAAAATATAATATAAC
6968727 A
1 A
6968728 CAAATGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
ATAAAAAAATATAATATAAC
Found at i:6968962 original size:57 final size:57
Alignment explanation
Indices: 6968888--6969024 Score: 157
Period size: 60 Copynumber: 2.4 Consensus size: 57
6968878 TCAATGTATC
* * * ** * * *
6968888 ATTTAAAATAAATTATATAATCTCTTATGATTATGCATGGGTATTAACTATCATGTG
1 ATTTAAAATAAAATATATAATCTCTCATAATTACACATAGGTATCAAATATCATGTG
* *
6968945 ATTTACAATAAAGTATATAAAAATCTCTCATAATTACACATAGGTATCAAATATCATGTG
1 ATTTAAAATAAA--ATAT-ATAATCTCTCATAATTACACATAGGTATCAAATATCATGTG
6969005 ATTTAAAATAAAATATATAA
1 ATTTAAAATAAAATATATAA
6969025 AACAAGTTAT
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
57 14 0.22
58 4 0.06
59 3 0.05
60 44 0.68
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.37
Consensus pattern (57 bp):
ATTTAAAATAAAATATATAATCTCTCATAATTACACATAGGTATCAAATATCATGTG
Found at i:6971039 original size:62 final size:60
Alignment explanation
Indices: 6970848--6971621 Score: 206
Period size: 62 Copynumber: 12.3 Consensus size: 60
6970838 AAATTGAATA
* ** * * *
6970848 GGATTATTAAAGGCATTTTTGACAAAAATGCCTTCAATAATCCATTCAAAAATTTTGGAG
1 GGATTATTGAAGGCATTTTTTTCAAAAATGACTTCAATAATCCATACAAAAATTTTAGAG
* * ** * *
6970908 GGAATACTGAAGGCATTTTCGATCAAAAATGAATTCAATAATCCATACAAAAAATTTTAAAAG
1 GGATTATTGAAGGCATTTT-TTTCAAAAATGACTTCAATAATCCATAC-AAAAATTTT-AGAG
** * * *
6970971 AAATTATTGAAGGCATTTTTTTCCAAAAATG-CTTCAATAATTCATACAAAATTTTTTTGAGG
1 GGATTATTGAAGGCATTTTTTT-CAAAAATGACTTCAATAATCCATACAAAA-ATTTTAGA-G
* ** * * * * *
6971033 GGATTATTAAAGATATTTTTGGTCAAAAA-CACATTCAATAATCCTTTATAAAAATTTATTGAG
1 GGATTATTGAAGGCATTTTT-TTCAAAAATGAC-TTCAATAATCC-ATACAAAAATTT-TAGAG
* ** ** * * * *
6971096 AGGATTATTGATGATATTTTTAGCCAAAAA-CACTTTCAATAATCCTCTTA-ACAAAATTTGAAA
1 -GGATTATTGAAGGCATTTTT-TTCAAAAATGAC-TTCAATAAT-C-CATACA-AAAATTTTAGA
*
6971159 A
60 G
** * * * * * *
6971160 GGATTATTGAAGGCATTTTTGACCAAAAA-CATCTTTAATAATCTCCTAAAAAAATTTGAAAG
1 GGATTATTGAAGGCATTTTT-TTCAAAAATGA-CTTCAATAATC-CATACAAAAATTTTAGAG
* * * *
6971222 GGATTATTGAAGGCGTTTTTAGTCAAAAA-CACCTTCAATAATCCTTTTGA-AAAAATTTTAGAA
1 GGATTATTGAAGGCATTTTT-TTCAAAAATGA-CTTCAATAATCC--AT-ACAAAAATTTTAG-A
*
6971285 T
60 G
* * ** * * * * *
6971286 GGACTATTAAAGGCATTTTTGACCAAAAATGCCTTCAATAATCCCTTGA-AAAAATTTGAAAT
1 GGATTATTGAAGGCATTTTT-TTCAAAAATGACTTCAATAAT-CCAT-ACAAAAATTTTAGAG
* * * * * ** *
6971348 GGATTATTAAATGTATTTTTTACCACAAATCTCCTTCAATAATCCCT-CATAAATATTTATAGAG
1 GGATTATTGAAGGCATTTTTT-TCAAAAAT-GACTTCAATAATCCATACA-AAA-ATTT-TAGAG
* * ** * * * * * *
6971412 GGAATTATTGAACGTA-TTTTGGCTAAAAATGCCTTTAATAAGCTCTTGA-AAAAATTTGA-AA
1 GG-ATTATTGAAGGCATTTTTTTC-AAAAATGACTTCAATAATC-CAT-ACAAAAATTTTAGAG
* ** * ** * *
6971473 GGATTATTAAATTCATTTTTGGTCAAAAAT-ACATTCAATAATCTTTCATAAAAATTTATGGATG
1 GGATTATTGAAGGCATTTTT-TTCAAAAATGAC-TTCAATAATCCAT-ACAAAAATTT-TAGA-G
* * * * * * *
6971537 GGATTAATTGAATGCATTTTTGGTCAAAAACGCCTTCAATAATCCTTCATAAAAATTTATTGATG
1 GGATT-ATTGAAGGCATTTTT-TTCAAAAATGACTTCAATAATCCAT-ACAAAAATTT-TAGA-G
* *
6971602 GGATTATTTAAGGTATTTTT
1 GGATTATTGAAGGCATTTTT
6971622 GTCAGAAACG
Statistics
Matches: 558, Mismatches: 113, Indels: 82
0.74 0.15 0.11
Matches are distributed among these distances:
60 29 0.05
61 58 0.10
62 139 0.25
63 129 0.23
64 120 0.22
65 81 0.15
66 2 0.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (60 bp):
GGATTATTGAAGGCATTTTTTTCAAAAATGACTTCAATAATCCATACAAAAATTTTAGAG
Found at i:6971103 original size:64 final size:63
Alignment explanation
Indices: 6971024--6971641 Score: 308
Period size: 64 Copynumber: 9.8 Consensus size: 63
6971014 ATACAAAATT
* * *
6971024 TTTTTGAGGGGATTATTAAAGATATTTTTGGTCAAAAACACATTCAATAATCCTTTATAAAAA
1 TTTTTGAGAGGATTATTAAAGGTATTTTTGGTCAAAAACACCTTCAATAATCCTTTATAAAAA
* * * * * *
6971087 TTTATTGAGAGGATTATTGATGATATTTTTAGCCAAAAACACTTTCAATAATCCTCTTA-ACAAA
1 TTT-TTGAGAGGATTATTAAAGGTATTTTTGGTCAAAAACACCTTCAATAATCCT-TTATA-AAA
6971151 A
63 A
* * * ** * * *
6971152 --TTTGAAAAGGATTATTGAAGGCATTTTTGACCAAAAACATCTTTAATAAT-CTCCTA-AAAAA
1 TTTTTG-AGAGGATTATTAAAGGTATTTTTGGTCAAAAACACCTTCAATAATCCT-TTATAAAAA
* * * ** *
6971213 -ATTTGAAAGGGATTATTGAAGGCGTTTTTAGTCAAAAACACCTTCAATAATCCTTT-TGAAAAA
1 TTTTTGAGA-GGATTATTAAAGGTATTTTTGGTCAAAAACACCTTCAATAATCCTTTAT-AAAAA
* * * ** ** *
6971276 ATTTT-AGAATGGACTATTAAAGGCATTTTTGACCAAAAATGCCTTCAATAATCCCTTGA-AAAA
1 TTTTTGAG-A-GGATTATTAAAGGTATTTTTGGTCAAAAACACCTTCAATAAT-CCTTTATAAAA
6971339 A
63 A
* * *** * * * * *
6971340 --TTTGAAATGGATTATTAAATGTATTTTTTACCACAAATCTCCTTCAATAATCCCTCATAAATA
1 TTTTTGAGA-GGATTATTAAAGGTATTTTTGGTCA-AAAACACCTTCAATAATCCTTTATAAAAA
* * * ** * * *
6971403 TTTAT-AGAGGGAATTATTGAACGTA-TTTTGG-CTAAAAATGCCTTTAATAAGCTCTTGA-AAA
1 TTTTTGAGA-GG-ATTATTAAAGGTATTTTTGGTC-AAAAACACCTTCAATAATC-CTTTATAAA
6971464 AA
62 AA
* * * *
6971466 --TTTGAAAGGATTATTAAA-TTCATTTTTGGTCAAAAATACATTCAATAAT-CTTTCATAAAAA
1 TTTTTGAGAGGATTATTAAAGGT-ATTTTTGGTCAAAAACACCTTCAATAATCCTTT-ATAAAAA
* * * * * *
6971527 TTTATG-GATGGGATTAATTGAATGCATTTTTGGTCAAAAACGCCTTCAATAATCCTTCATAAAA
1 TTTTTGAGA--GGATT-ATTAAAGGTATTTTTGGTCAAAAACACCTTCAATAATCCTTTATAAAA
6971591 A
63 A
* * * *
6971592 TTTATTGATG-GGATTATTTAAGGTATTTTT-GTCAGAAACGCCTTGAATAA
1 TTT-TTGA-GAGGATTATTAAAGGTATTTTTGGTCAAAAACACCTTCAATAA
6971642 CCTCATTGAA
Statistics
Matches: 433, Mismatches: 85, Indels: 74
0.73 0.14 0.12
Matches are distributed among these distances:
59 4 0.01
60 10 0.02
61 36 0.08
62 84 0.19
63 106 0.24
64 118 0.27
65 69 0.16
66 5 0.01
68 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (63 bp):
TTTTTGAGAGGATTATTAAAGGTATTTTTGGTCAAAAACACCTTCAATAATCCTTTATAAAAA
Found at i:6971367 original size:126 final size:125
Alignment explanation
Indices: 6970834--6971594 Score: 412
Period size: 126 Copynumber: 6.1 Consensus size: 125
6970824 AATGGTTTAC
* * * * ** *
6970834 AAAAAAATTGAATAGGATTATTAAAGGCATTTTT-GACAAAAATGCCTTCAATAATCCATTC--A
1 AAAAAATTTGAA-AGGATTATTAAATGTATTTTTAGCCAAAAACACCTTCAATAATCCTTTCATA
* * * * * * * ** * **
6970896 AAAATTTT-GGAGGGAATACTGAAGGCATTTTCGATCAAAAATGAATTCAATAATCCATAC
65 AAAATTTTAGAATGGATTATTGAAGGCATTTTTGACCAAAAACGCCTTCAATAATCCCTTG
* * * * * ** ** * * *
6970956 AAAAAATTTTAAAAGAAATTATTGAAGGCATTTTTTTCCAAAAA-TGCTTCAATAATTCATACA-
1 AAAAAA-TTTGAAAG-GATTATTAAATGTATTTTTAGCCAAAAACACCTTCAATAATCCTTTCAT
** * ** * ** ** * * *
6971019 AAATTTTTTTGAGGGGATTATTAAAGATATTTTTGGTCAAAAACACATTCAATAAT-CCTTT
64 AAAAATTTTAGAATGGATTATTGAAGGCATTTTTGACCAAAAACGCCTTCAATAATCCCTTG
* * *
6971080 ATAAAAATTTATTGAGAGGATTATT-GATGATATTTTTAGCCAAAAACACTTTCAATAATCCTCT
1 A-AAAAA--T-TTGAAAGGATTATTAAATG-TATTTTTAGCCAAAAACACCTTCAATAATCCT-T
* * ** *
6971144 T-A-ACAAAATTTGA-AAAGGATTATTGAAGGCATTTTTGACCAAAAACATCTTTAATAATCTCC
60 TCATA-AAAATTTTAGAATGGATTATTGAAGGCATTTTTGACCAAAAACGCCTTCAATAATC-CC
*
6971206 -TA
123 TTG
* * ** * *
6971208 AAAAAATTTGAAAGGGATTATTGAAGGCGTTTTTAGTCAAAAACACCTTCAATAATCCTTTTGA-
1 AAAAAATTTGAAA-GGATTATTAAATGTATTTTTAGCCAAAAACACCTTCAATAATCC-TTTCAT
* * *
6971272 AAAAATTTTAGAATGGACTATTAAAGGCATTTTTGACCAAAAATGCCTTCAATAATCCCTTG
64 AAAAATTTTAGAATGGATTATTGAAGGCATTTTTGACCAAAAACGCCTTCAATAATCCCTTG
* * *
6971334 AAAAAATTTGAAATGGATTATTAAATGTATTTTTTA-CCACAAATCTCCTTCAATAATCC-CTCA
1 AAAAAATTTGAAA-GGATTATTAAATGTA-TTTTTAGCCA-AAAACACCTTCAATAATCCTTTCA
* * * * * * * * * *
6971397 TAAATATTTATAG-AGGGAATTATTGAACGTA-TTTTGGCTAAAAATGCCTTTAATAAGCTCTTG
63 TAAAAATTT-TAGAATGG-ATTATTGAAGGCATTTTTGACCAAAAACGCCTTCAATAATCCCTTG
* * * *
6971460 AAAAAATTTGAAAGGATTATTAAAT-TCATTTTTGGTCAAAAATACATTCAATAAT-CTTTCATA
1 AAAAAATTTGAAAGGATTATTAAATGT-ATTTTTAGCCAAAAACACCTTCAATAATCCTTTCATA
* * ** *
6971523 AAAA-TTTATGGATGGGATTAATTGAATGCATTTTTGGTCAAAAACGCCTTCAATAAT-CCTTC
65 AAAATTTTA-GAAT-GGATT-ATTGAAGGCATTTTTGACCAAAAACGCCTTCAATAATCCCTTG
6971585 ATAAAAATTT
1 A-AAAAATTT
6971595 ATTGATGGGA
Statistics
Matches: 494, Mismatches: 111, Indels: 64
0.74 0.17 0.10
Matches are distributed among these distances:
122 10 0.02
123 39 0.08
124 52 0.11
125 120 0.24
126 171 0.35
127 92 0.19
128 8 0.02
129 2 0.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (125 bp):
AAAAAATTTGAAAGGATTATTAAATGTATTTTTAGCCAAAAACACCTTCAATAATCCTTTCATAA
AAATTTTAGAATGGATTATTGAAGGCATTTTTGACCAAAAACGCCTTCAATAATCCCTTG
Found at i:6971393 original size:63 final size:62
Alignment explanation
Indices: 6970834--6971594 Score: 292
Period size: 63 Copynumber: 12.1 Consensus size: 62
6970824 AATGGTTTAC
* * *
6970834 AAAAAAATTG-AATAGGATTATTAAAGGCATTTTTGA-CAAAAA-TGCCTTCAATAATCCATTC
1 AAAAAATTTGAAAT-GGATTATTAAAGGCATTTTTGACCAAAAACT-CCTTCAATAATCCCTTG
* * * * * * * * ** * **
6970895 AAAAATTTTG-GAGGGAATACTGAAGGCATTTTCGATCAAAAA-TGAATTCAATAATCCATAC
1 AAAAAATTTGAAATGGATTATTAAAGGCATTTTTGACCAAAAACT-CCTTCAATAATCCCTTG
* * * * ** * * * **
6970956 AAAAAATTTTAAAAGAAATTATTGAAGGCATTTTTTTCCAAAAA-TGCTTCAATAATTCATAC
1 AAAAAATTTGAAATG-GATTATTAAAGGCATTTTTGACCAAAAACTCCTTCAATAATCCCTTG
** ** ** ** * * *
6971018 AAAATTTTTTTG-AGGGGATTATTAAAGATATTTTTGGTCAAAAACACATTCAATAAT-CCTTT
1 AAAA--AATTTGAAATGGATTATTAAAGGCATTTTTGACCAAAAACTCCTTCAATAATCCCTTG
* * * ** * *
6971080 ATAAAAATTTATTGAGA-GGATTATTGATGATATTTTT-AGCCAAAAACACTTTCAATAATCCTC
1 A-AAAAA--T-TTGAAATGGATTATTAAAGGCATTTTTGA-CCAAAAACTCCTTCAATAATCC-C
6971143 TT-
60 TTG
* * * *
6971145 AACAAAATTTGAAAAGGATTATTGAAGGCATTTTTGACCAAAAACAT-CTTTAATAATCTCC-TA
1 AA-AAAATTTGAAATGGATTATTAAAGGCATTTTTGACCAAAAAC-TCCTTCAATAATC-CCTTG
* * * * * *
6971208 AAAAAATTTGAAAGGGATTATTGAAGGCGTTTTT-AGTCAAAAACACCTTCAATAATCCTTTTG
1 AAAAAATTTGAAATGGATTATTAAAGGCATTTTTGA-CCAAAAACTCCTTCAATAATCC-CTTG
* *
6971271 AAAAAATTTTAGAATGGACTATTAAAGGCATTTTTGACCAAAAA-TGCCTTCAATAATCCCTTG
1 AAAAAATTTGA-AATGGATTATTAAAGGCATTTTTGACCAAAAACT-CCTTCAATAATCCCTTG
* * * * *
6971334 AAAAAATTTGAAATGGATTATTAAATGTATTTTTTACCACAAATCTCCTTCAATAATCCC-TC
1 AAAAAATTTGAAATGGATTATTAAAGGCATTTTTGACCA-AAAACTCCTTCAATAATCCCTTG
* * * * * * * * * *
6971396 ATAAATATTT-ATAGAGGGAATTATTGAACGTA-TTTTGGCTAAAAA-TGCCTTTAATAAGCTCT
1 A-AAAAATTTGA-A-ATGG-ATTATTAAAGGCATTTTTGACCAAAAACT-CCTTCAATAATCCCT
6971458 TG
61 TG
** ** * * *
6971460 AAAAAATTTGAAA-GGATTATTAAATTCATTTTTGGTCAAAAA-TACATTCAATAAT-CTTTC
1 AAAAAATTTGAAATGGATTATTAAAGGCATTTTTGACCAAAAACT-CCTTCAATAATCCCTTG
* * * ** *
6971520 ATAAAAATTT-ATGGATGGGATTAATTGAATGCATTTTTGGTCAAAAACGCCTTCAATAAT-CCT
1 A-AAAAATTTGA--AAT-GGATT-ATTAAAGGCATTTTTGACCAAAAACTCCTTCAATAATCCCT
*
6971583 TC
61 TG
6971585 ATAAAAATTT
1 A-AAAAATTT
6971595 ATTGATGGGA
Statistics
Matches: 543, Mismatches: 113, Indels: 84
0.73 0.15 0.11
Matches are distributed among these distances:
60 31 0.06
61 71 0.13
62 127 0.23
63 146 0.27
64 101 0.19
65 64 0.12
66 3 0.01
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (62 bp):
AAAAAATTTGAAATGGATTATTAAAGGCATTTTTGACCAAAAACTCCTTCAATAATCCCTTG
Found at i:6972605 original size:17 final size:17
Alignment explanation
Indices: 6972583--6972616 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
6972573 TGATATTAAA
*
6972583 TATTTTTACTTTTTATG
1 TATTTTTACTTTATATG
6972600 TATTTTTACTTTATATG
1 TATTTTTACTTTATATG
6972617 AAACTATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.68
Consensus pattern (17 bp):
TATTTTTACTTTATATG
Found at i:6973386 original size:13 final size:14
Alignment explanation
Indices: 6973362--6973396 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
6973352 AAAATGGAAG
*
6973362 AGAGAAAGGAAAAA
1 AGAGAAAAGAAAAA
6973376 A-AGAAAAGAAAAA
1 AGAGAAAAGAAAAA
6973389 AGAGAAAA
1 AGAGAAAA
6973397 AGGATAAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (14 bp):
AGAGAAAAGAAAAA
Found at i:6984715 original size:13 final size:12
Alignment explanation
Indices: 6984697--6984737 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
6984687 AATAATAACT
6984697 AATTAATTGTTTA
1 AATTAATT-TTTA
6984710 AATTAATCTTTTA
1 AATTAAT-TTTTA
6984723 AATGTAATTTTTA
1 AAT-TAATTTTTA
6984736 AA
1 AA
6984738 GAAAATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 21 0.81
14 5 0.19
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.51
Consensus pattern (12 bp):
AATTAATTTTTA
Found at i:6988517 original size:16 final size:17
Alignment explanation
Indices: 6988496--6988528 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
6988486 ATATCCTTTA
6988496 CATTCATGCATT-TATG
1 CATTCATGCATTGTATG
6988512 CATTCATGCATTGTATG
1 CATTCATGCATTGTATG
6988529 TGTATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.42
Consensus pattern (17 bp):
CATTCATGCATTGTATG
Found at i:6997077 original size:36 final size:36
Alignment explanation
Indices: 6997008--6997078 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 36
6996998 AGAAGAGCAA
* * * *
6997008 TTTAAAGTTTCATTACCTCTGGTTAGAGAAGCTTTC
1 TTTAAAGTGTCATGACATCTAGTTAGAGAAGCTTTC
* *
6997044 TTTAAAGTGTCATGACATCTAGTTATAGTAGCTTT
1 TTTAAAGTGTCATGACATCTAGTTAGAGAAGCTTT
6997079 TAATTTCATA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (36 bp):
TTTAAAGTGTCATGACATCTAGTTAGAGAAGCTTTC
Found at i:6997243 original size:36 final size:36
Alignment explanation
Indices: 6997203--6997302 Score: 98
Period size: 36 Copynumber: 2.8 Consensus size: 36
6997193 GTTAGATGAG
*
6997203 CTTTAAAGTTTTATTACCT-TTGATA-ATAGGAGCCTT
1 CTTTAAAGTTTTATTACCTCTAGATAGAT--GAGCCTT
* **
6997239 CTTTAAAGTTTCATTGTCTCTAGATAGATGAGCCTT
1 CTTTAAAGTTTTATTACCTCTAGATAGATGAGCCTT
* *
6997275 TTTTAAAGTTTTA-TAGCCTCTAGTTAGA
1 CTTTAAAGTTTTATTA-CCTCTAGATAGA
6997303 GGAGTTTTCT
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
35 1 0.02
36 44 0.85
37 5 0.10
38 2 0.04
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (36 bp):
CTTTAAAGTTTTATTACCTCTAGATAGATGAGCCTT
Found at i:6997383 original size:36 final size:36
Alignment explanation
Indices: 6997240--6997395 Score: 150
Period size: 36 Copynumber: 4.3 Consensus size: 36
6997230 AGGAGCCTTC
* * * * **
6997240 TTTAAAGTTTCATTGTCTCTAGATAGATGAGCCTTT
1 TTTAAAGTTTCATAGCCTCTAGTTAGAGGAGTTTTT
*
6997276 TTTAAAGTTTTATAGCCTCTAGTTAGAGGAGTTTTCT
1 TTTAAAGTTTCATAGCCTCTAGTTAGAGGAGTTTT-T
* * * *
6997313 CTTCAAAGTTGCATAGCCTATGGTTAGAGGAGTTTTT
1 -TTTAAAGTTTCATAGCCTCTAGTTAGAGGAGTTTTT
* * * *
6997350 TTTTAAGTTTCATAACCTCTAGTTAAAGAAGTTTTT
1 TTTAAAGTTTCATAGCCTCTAGTTAGAGGAGTTTTT
*
6997386 TTTTAAGTTT
1 TTTAAAGTTT
6997396 TATTACCTTT
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
36 66 0.67
37 2 0.02
38 30 0.31
ACGTcount: A:0.26, C:0.12, G:0.17, T:0.46
Consensus pattern (36 bp):
TTTAAAGTTTCATAGCCTCTAGTTAGAGGAGTTTTT
Found at i:6997909 original size:3 final size:3
Alignment explanation
Indices: 6997901--6997944 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
6997891 AAACCTTTAA
*
6997901 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT TTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6997945 CATTCTAACA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:6999091 original size:6 final size:6
Alignment explanation
Indices: 6999075--6999108 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
6999065 GCTTAGTAAG
* *
6999075 TTTTTC CTTTTC TTTTTC TTTTTC TTTTTA TTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTT
6999109 CAATTTTGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:6999204 original size:9 final size:9
Alignment explanation
Indices: 6999172--6999226 Score: 56
Period size: 9 Copynumber: 6.1 Consensus size: 9
6999162 TTTTTTATGA
*
6999172 TATTATTAT
1 TATTGTTAT
*
6999181 TATTATTAT
1 TATTGTTAT
6999190 TATTGTTAT
1 TATTGTTAT
* *
6999199 TGTTGTTGT
1 TATTGTTAT
* *
6999208 TGTTGTTGT
1 TATTGTTAT
6999217 TATTGTTAT
1 TATTGTTAT
6999226 T
1 T
6999227 TTATGTTACT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.67
Consensus pattern (9 bp):
TATTGTTAT
Found at i:7002746 original size:22 final size:22
Alignment explanation
Indices: 7002718--7002761 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7002708 ATTGTCTCTT
7002718 GTATGTGTGCTAGAGCAATGAG
1 GTATGTGTGCTAGAGCAATGAG
7002740 GTATGTGTGCTAGAGCAATGAG
1 GTATGTGTGCTAGAGCAATGAG
7002762 CCATAATGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.27
Consensus pattern (22 bp):
GTATGTGTGCTAGAGCAATGAG
Found at i:7005513 original size:16 final size:16
Alignment explanation
Indices: 7005467--7005528 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
7005457 TGTTTTATGA
7005467 TAACAATTGGTATACTT
1 TAACAATTGGTAT-CTT
* **
7005484 TATC-ATTACATATCTT
1 TAACAATT-GGTATCTT
**
7005500 TAACAATTGGTATCCA
1 TAACAATTGGTATCTT
7005516 TAACAATTGGTAT
1 TAACAATTGGTAT
7005529 GAGCTTATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
16 26 0.74
17 9 0.26
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (16 bp):
TAACAATTGGTATCTT
Found at i:7013313 original size:21 final size:19
Alignment explanation
Indices: 7013275--7013314 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
7013265 TTATTAGGTA
*
7013275 TATTATGAAATTAATAAAT
1 TATTATAAAATTAATAAAT
7013294 TATTATAATAATTAAATAAAT
1 TATTATAA-AATT-AATAAAT
7013315 ACATAGCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 4 0.22
21 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
TATTATAAAATTAATAAAT
Found at i:7019992 original size:2 final size:2
Alignment explanation
Indices: 7019987--7020011 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7019977 CTCTCTCTTT
7019987 CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA C
7020012 TTATGTTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:7025205 original size:16 final size:16
Alignment explanation
Indices: 7025184--7025214 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7025174 TAATTTAATA
7025184 AAATTCATAAAAAATT
1 AAATTCATAAAAAATT
*
7025200 AAATTCATGAAAAAT
1 AAATTCATAAAAAAT
7025215 CATCCAATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.29
Consensus pattern (16 bp):
AAATTCATAAAAAATT
Found at i:7026730 original size:17 final size:18
Alignment explanation
Indices: 7026690--7026737 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
7026680 AAATTCATAA
* *
7026690 AAAATTTGTAATGATTTC
1 AAAATTTGCAAAGATTTC
7026708 AAAATTTGCAAAGATTT-
1 AAAATTTGCAAAGATTTC
*
7026725 AAAATTTACAAAG
1 AAAATTTGCAAAG
7026738 GTTTTCATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.35
Consensus pattern (18 bp):
AAAATTTGCAAAGATTTC
Found at i:7026915 original size:86 final size:87
Alignment explanation
Indices: 7026716--7026924 Score: 210
Period size: 86 Copynumber: 2.4 Consensus size: 87
7026706 TCAAAATTTG
* * *
7026716 CAAAGATTTAAAATTTACAAAGGTTTTCATATTCGT-AAACATTTTCAGATTCACAAGAATGAAA
1 CAAAGGTTTTAAATTTACAAAGG-TTTCATATTCATAAAACATTTTCAGATTCACAAGAATGAAA
* * *
7026780 TATTCACAAGATTTCAAGTTTTA
65 GATTCACAAGATTTCAAGTGTCA
* * ** **
7026803 TAGAGGTTTTAAATTCGCAGAA-GTTTCATATTCATAAGAAC-TTTT-AGATTCGTAAGAATGAA
1 CAAAGGTTTTAAATTTACA-AAGGTTTCATATTCATAA-AACATTTTCAGATTCACAAGAATGAA
* *
7026865 AGATTTATAAGATTTCAAGTGTCA
64 AGATTCACAAGATTTCAAGTGTCA
* * *
7026889 CAAAGGTTTTAGATTTTCAAAGGTTTCATGTTCATA
1 CAAAGGTTTTAAATTTACAAAGGTTTCATATTCATA
7026925 GGAAATTAAA
Statistics
Matches: 98, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
85 2 0.02
86 72 0.73
87 19 0.19
88 5 0.05
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (87 bp):
CAAAGGTTTTAAATTTACAAAGGTTTCATATTCATAAAACATTTTCAGATTCACAAGAATGAAAG
ATTCACAAGATTTCAAGTGTCA
Found at i:7027097 original size:36 final size:36
Alignment explanation
Indices: 7027057--7027127 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
7027047 CTTCAGTTTC
7027057 GTAAGAAATTCAAGTTCACAAGAAATTCAAAGATTT
1 GTAAGAAATTCAAGTTCACAAGAAATTCAAAGATTT
* * * *
7027093 GTAAGAGATTTAAGTTTACAAGAAATTCAGAGATT
1 GTAAGAAATTCAAGTTCACAAGAAATTCAAAGATT
7027128 CACATTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.45, C:0.08, G:0.17, T:0.30
Consensus pattern (36 bp):
GTAAGAAATTCAAGTTCACAAGAAATTCAAAGATTT
Found at i:7027116 original size:53 final size:52
Alignment explanation
Indices: 7026964--7027131 Score: 142
Period size: 53 Copynumber: 3.1 Consensus size: 52
7026954 AGATTAAAAG
* * * * * *
7026964 GTTCATAAGAAATTAAAAGATTCGCATGAGTTTCAA-TTTCACAAGCAAGTCAA
1 GTTCACAAGAAATTCAAAGATTCGTAAGAGTTT-AAGTTT-ACAAGAAATTCAA
** * * * *
7027017 GTTTGCAAGAAATTCAAAAATTCATAAGAGCTTCAGTTT-CGTAAGAAATTCAA
1 GTTCACAAGAAATTCAAAGATTCGTAAGAGTTTAAGTTTAC--AAGAAATTCAA
*
7027070 GTTCACAAGAAATTCAAAGATTTGTAAGAGATTTAAGTTTACAAGAAATTCAGA
1 GTTCACAAGAAATTCAAAGATTCGTAAGAG-TTTAAGTTTACAAGAAATTCA-A
7027124 GATTCACA
1 G-TTCACA
7027132 TTTAAAAGAT
Statistics
Matches: 89, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
51 1 0.01
52 1 0.01
53 71 0.80
54 9 0.10
55 7 0.08
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.29
Consensus pattern (52 bp):
GTTCACAAGAAATTCAAAGATTCGTAAGAGTTTAAGTTTACAAGAAATTCAA
Found at i:7030056 original size:23 final size:24
Alignment explanation
Indices: 7030010--7030056 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
7030000 GCATGATGAA
* * *
7030010 AATGATTTTGTGATTTTTATACAT
1 AATGATTTTATGATTGTTAAACAT
7030034 AATGA-TTTATGATTGTTAAACAT
1 AATGATTTTATGATTGTTAAACAT
7030057 GCTTATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.34, C:0.04, G:0.13, T:0.49
Consensus pattern (24 bp):
AATGATTTTATGATTGTTAAACAT
Found at i:7030469 original size:11 final size:11
Alignment explanation
Indices: 7030453--7030477 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7030443 AAAATTTTTT
7030453 TATTTTTAAAA
1 TATTTTTAAAA
7030464 TATTTTTAAAA
1 TATTTTTAAAA
7030475 TAT
1 TAT
7030478 GCTTGCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:7032386 original size:16 final size:16
Alignment explanation
Indices: 7032367--7032397 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7032357 TTTTATAACA
*
7032367 TATCTTTAACAATTGG
1 TATCTATAACAATTGG
7032383 TATCTATAACAATTG
1 TATCTATAACAATTG
7032398 ATATGAGCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (16 bp):
TATCTATAACAATTGG
Found at i:7034839 original size:43 final size:43
Alignment explanation
Indices: 7034755--7034839 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
7034745 AAAGCTAACA
* *
7034755 ATTTTCATTAAAAAATTTTGGGATTCACATATGAAAGTTCAAG
1 ATTTTCATTAAAAAATTTTGAGATTCACATACGAAAGTTCAAG
* * * *
7034798 ATTTTCATTAAAAAGTTTTTAGATTCACATGCGAAATTTCAA
1 ATTTTCATTAAAAAATTTTGAGATTCACATACGAAAGTTCAA
7034840 AAATTCACAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.39
Consensus pattern (43 bp):
ATTTTCATTAAAAAATTTTGAGATTCACATACGAAAGTTCAAG
Done.