Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 42 of 190
Found at i:7210990 original size:8 final size:8
Alignment explanation
Indices: 7210977--7211170 Score: 61
Period size: 8 Copynumber: 23.0 Consensus size: 8
7210967 TATGATTTGC
7210977 TTTATTTT
1 TTTATTTT
7210985 TTTATTATT
1 TTTATT-TT
7210994 GTATTA-TTT
1 -T-TTATTTT
*
7211003 TTTA-TTA
1 TTTATTTT
*
7211010 TTTATTTG
1 TTTATTTT
7211018 TTTATTTT
1 TTTATTTT
*
7211026 ATTATTTATT
1 TTTA-TT-TT
7211036 AGTTTATTTT
1 --TTTATTTT
* *
7211046 AATTATTTA
1 -TTTATTTT
*
7211055 TTTATTAT
1 TTTATTTT
**
7211063 TTTATTAA
1 TTTATTTT
**
7211071 TTTATTAG
1 TTTATTTT
7211079 TTTATTTT
1 TTTATTTT
* *
7211087 AGTTATTTA
1 -TTTATTTT
7211096 TTTATTATT
1 TTTATT-TT
7211105 TATTAGTTTAT
1 T-TTA-TTT-T
**
7211116 TTTATTAG
1 TTTATTTT
**
7211124 TTTATTAG
1 TTTATTTT
*
7211132 TTTATTTA
1 TTTATTTT
* *
7211140 ATTATTTA
1 TTTATTTT
*
7211148 TTTA-TTA
1 TTTATTTT
*
7211155 TTTATTTG
1 TTTATTTT
7211163 TTTATTTT
1 TTTATTTT
7211171 ATTAGGAGTC
Statistics
Matches: 145, Mismatches: 27, Indels: 28
0.73 0.14 0.14
Matches are distributed among these distances:
7 16 0.11
8 82 0.57
9 22 0.15
10 13 0.09
11 9 0.06
12 3 0.02
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (8 bp):
TTTATTTT
Found at i:7211022 original size:41 final size:44
Alignment explanation
Indices: 7210971--7211175 Score: 183
Period size: 44 Copynumber: 4.6 Consensus size: 44
7210961 AATAAATATG
7210971 ATTTGCTTTATTTTTTTA-TTATT-GTATTATTT-TTTA-TTATTT
1 ATTTG-TTTATTTTTTTATTTATTAGT-TTATTTATTTATTTATTT
* *
7211013 ATTTGTTTATTTTATTATTTATTAGTTTATTTTAATTATTTATTT
1 ATTTGTTTATTTTTTTATTTATTAGTTTA-TTTATTTATTTATTT
7211058 ATTAT-TTTATTAATTTATTAGTTTATTTTAG-TTATTTATTTA-TTATTT
1 ATT-TGTTTATT--TTT-TTA-TTTA--TTAGTTTATTTATTTATTTATTT
* * *
7211106 ATTAGTTTATTTTATTAGTTTATTAGTTTATTTAATTATTTATTT
1 ATTTGTTTATTTTTTTA-TTTATTAGTTTATTTATTTATTTATTT
* *
7211151 A-TTATTTATTTGTTTATTTTATTAG
1 ATTTGTTTATTTTTTTA-TTTATTAG
7211176 GAGTCGCCAT
Statistics
Matches: 136, Mismatches: 12, Indels: 28
0.77 0.07 0.16
Matches are distributed among these distances:
41 11 0.08
42 13 0.10
43 9 0.07
44 32 0.24
45 30 0.22
46 3 0.02
47 2 0.01
48 18 0.13
49 11 0.08
50 3 0.02
51 4 0.03
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.70
Consensus pattern (44 bp):
ATTTGTTTATTTTTTTATTTATTAGTTTATTTATTTATTTATTT
Found at i:7211056 original size:45 final size:44
Alignment explanation
Indices: 7210971--7211174 Score: 132
Period size: 41 Copynumber: 4.9 Consensus size: 44
7210961 AATAAATATG
* *
7210971 ATTTGCTTTATTTTTTTA--TTATT-GTATTATTT-TTTATTATTT
1 ATTTG-TTTATTTTATTAGTTTATTAGT-TTATTTAATTATTATTT
*
7211013 ATTTGTTTATTTTATTA-TTTATTAGTTTATTT--TAATTATTT
1 ATTTGTTTATTTTATTAGTTTATTAGTTTATTTAATTATTATTT
* * *
7211054 ATTT-ATTATTTTATTAATTTATTAGTTTATTTTAGTTATTTATTT
1 ATTTGTTTATTTTATTAGTTTATTAGTTTA-TTTAATTA-TTATTT
* * * *
7211099 A-TTATTTATTAGT-TTATTTTATTAGTTTA-TT-AGT-TTATTT
1 ATTTGTTTATT-TTATTAGTTTATTAGTTTATTTAATTATTATTT
* * * *
7211139 AATTATTTA-TTTATTA-TTTATTTGTTTATTTTATTA
1 ATTTGTTTATTTTATTAGTTTATTAGTTTATTTAATTA
7211175 GGAGTCGCCA
Statistics
Matches: 136, Mismatches: 12, Indels: 28
0.77 0.07 0.16
Matches are distributed among these distances:
39 12 0.09
40 24 0.18
41 44 0.32
42 20 0.15
43 4 0.03
44 4 0.03
45 27 0.20
46 1 0.01
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (44 bp):
ATTTGTTTATTTTATTAGTTTATTAGTTTATTTAATTATTATTT
Found at i:7212179 original size:16 final size:17
Alignment explanation
Indices: 7212158--7212198 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
7212148 CGTGTCCTTA
*
7212158 GGATTTTTAGGA-TTTT
1 GGATTTTAAGGAGTTTT
*
7212174 GGATTTTAATGAGTTTT
1 GGATTTTAAGGAGTTTT
7212191 GGATTTTA
1 GGATTTTA
7212199 GGGGTTTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.22, C:0.00, G:0.24, T:0.54
Consensus pattern (17 bp):
GGATTTTAAGGAGTTTT
Found at i:7214076 original size:110 final size:109
Alignment explanation
Indices: 7213880--7214209 Score: 399
Period size: 110 Copynumber: 3.0 Consensus size: 109
7213870 AACATAAAAT
* * * * * * * * *
7213880 GATTGGGATGACACCGTAAGTCAAAAAATAATGAATTGATCGAGATAACATCGCGAATCAAATTT
1 GATTGGGATAACACCGCAAGTCGAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAAATT
* * * *
7213945 ATGCCCGAAAGTCTTACAAATCATGCACGGAGGTCTTACAGAATC
66 ATACTCG-AAGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATC
*
7213990 GATTGGGATAACACCGCAAGTCGAAAGATAAAGAATCGATCGGGATAACACCGCGAATTAAAATT
1 GATTGGGATAACACCGCAAGTCGAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAAATT
* * *
7214055 ATATTTGAAGGTCTTAGAAATCATGCCCGAAGGTCTTACAGAATC
66 ATACTCGAA-GTCTTAGAAATCATGCCCGGAGGTCTTACAGAATC
* * * * * *
7214100 GAATGGGATAACACCACAAGTCGAAAGATAAAAAATCAATCGGGATAACACCGTGAATCGAAATT
1 GATTGGGATAACACCGCAAGTCGAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAAATT
* * *
7214165 ATGCCTGGAAGTCTTAGAAATCATGCCCGGAGGTCTTAGAGAATC
66 AT-ACTCGAAGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATC
7214210 ATGTCTGGAG
Statistics
Matches: 189, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
109 2 0.01
110 183 0.97
111 4 0.02
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (109 bp):
GATTGGGATAACACCGCAAGTCGAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAAATT
ATACTCGAAGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATC
Found at i:7214190 original size:22 final size:22
Alignment explanation
Indices: 7214159--7214225 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
7214149 ACCGTGAATC
* *
7214159 GAAATTATGCCTGGAAGTCTTA
1 GAAATCATGCCTGGAGGTCTTA
*
7214181 GAAATCATGCCCGGAGGTCTTA
1 GAAATCATGCCTGGAGGTCTTA
*
7214203 GAGAATCATGTCTGGAGGTCTTA
1 GA-AATCATGCCTGGAGGTCTTA
7214226 CAGAATCGAC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
22 21 0.54
23 18 0.46
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (22 bp):
GAAATCATGCCTGGAGGTCTTA
Found at i:7214219 original size:23 final size:23
Alignment explanation
Indices: 7214165--7214232 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
7214155 AATCGAAATT
*
7214165 ATGCCTGGAAGTCTTAGA-AATC
1 ATGCCTGGAGGTCTTAGAGAATC
*
7214187 ATGCCCGGAGGTCTTAGAGAATC
1 ATGCCTGGAGGTCTTAGAGAATC
* *
7214210 ATGTCTGGAGGTCTTACAGAATC
1 ATGCCTGGAGGTCTTAGAGAATC
7214233 GACTGGGATA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
22 16 0.40
23 24 0.60
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (23 bp):
ATGCCTGGAGGTCTTAGAGAATC
Found at i:7214260 original size:133 final size:133
Alignment explanation
Indices: 7214061--7214342 Score: 397
Period size: 133 Copynumber: 2.1 Consensus size: 133
7214051 AATTATATTT
*
7214061 GAAGGTCTTAGA-AATCATGCCCGAAGGTCTTACAGAATCGAATGGGATAACACCACAAGTCGAA
1 GAAGGTCTTAGAGAATCATGCCCGAAGGTCTTACAGAATCGAATGGGATAACACCACAAGTCAAA
*
7214125 AGATAAAAAATCAATCGGGATAACACCGTGAATCGAAATTATG-CCTGGAAGTCTTAGAAATCAT
66 AGATAAAAAATCAATCGGGATAACACCGTAAATCGAAATTATGTCC-GGAAGTCTTAGAAATCAT
7214189 GCCC
130 GCCC
* * * * * *
7214193 GGAGGTCTTAGAGAATCATGTCTGGAGGTCTTACAGAATCGACTGGGATAACATCACAAGTCAAA
1 GAAGGTCTTAGAGAATCATGCCCGAAGGTCTTACAGAATCGAATGGGATAACACCACAAGTCAAA
* ** * * *
7214258 AGATAAAGAATCAATCGGGATAACATTGTAAATTGAATTTATGTCCGGAGGTCTTAGAAATCATG
66 AGATAAAAAATCAATCGGGATAACACCGTAAATCGAAATTATGTCCGGAAGTCTTAGAAATCATG
*
7214323 CCT
131 CCC
*
7214326 GAAGGTCTTACAGAATC
1 GAAGGTCTTAGAGAATC
7214343 GACTAGGATA
Statistics
Matches: 131, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
132 11 0.08
133 118 0.90
134 2 0.02
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.23
Consensus pattern (133 bp):
GAAGGTCTTAGAGAATCATGCCCGAAGGTCTTACAGAATCGAATGGGATAACACCACAAGTCAAA
AGATAAAAAATCAATCGGGATAACACCGTAAATCGAAATTATGTCCGGAAGTCTTAGAAATCATG
CCC
Found at i:7214352 original size:110 final size:111
Alignment explanation
Indices: 7214191--7214555 Score: 488
Period size: 110 Copynumber: 3.3 Consensus size: 111
7214181 GAAATCATGC
* * *
7214191 CCGGAGGTCTTAGAGAATCATGTCT-GGAGGTCTTACAGAATCGACTGGGATAACATCACAAGTC
1 CCGGAGGTCTTAGA-AATCATGTCTCGAAGGTCTTACAGAATCGACTAGGATAACACCACAAGTC
* ** * *
7214255 AAAAGATAAAGAATCAATCGGGATAACATTGTAAATTGAATTTATGT
65 AAAAGATAAAGAATCGATCGGGATAACACCGTGAATTAAATTTATGT
*
7214302 CCGGAGGTCTTAGAAATCATGCCT-GAAGGTCTTACAGAATCGACTAGGATAACACCACAAGTCA
1 CCGGAGGTCTTAGAAATCATGTCTCGAAGGTCTTACAGAATCGACTAGGATAACACCACAAGTCA
* * * * *
7214366 AAAAATAATGAATCGATTGGGATAACACCGCGAATCAAATTTATGT
66 AAAGATAAAGAATCGATCGGGATAACACCGTGAATTAAATTTATGT
* * * *
7214412 CCGGAGGGCTTAGAAATCAT-TTTCGGAGGTCTTACAGAATCGATTAGGATAACACCACAAGTCA
1 CCGGAGGTCTTAGAAATCATGTCTCGAAGGTCTTACAGAATCGACTAGGATAACACCACAAGTCA
*
7214476 AAAGAAAAAGAATCGATCGGGATAACACCGTGAATTAAATTTATG-
66 AAAGATAAAGAATCGATCGGGATAACACCGTGAATTAAATTTATGT
* *
7214521 CCTAGAGGTTTTAGAAATCATG-CTCGAAGGTCTTA
1 CC-GGAGGTCTTAGAAATCATGTCTCGAAGGTCTTA
7214556 GACATCATGC
Statistics
Matches: 221, Mismatches: 30, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
109 3 0.01
110 204 0.92
111 14 0.06
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (111 bp):
CCGGAGGTCTTAGAAATCATGTCTCGAAGGTCTTACAGAATCGACTAGGATAACACCACAAGTCA
AAAGATAAAGAATCGATCGGGATAACACCGTGAATTAAATTTATGT
Found at i:7214391 original size:243 final size:243
Alignment explanation
Indices: 7213945--7214452 Score: 655
Period size: 243 Copynumber: 2.1 Consensus size: 243
7213935 AATCAAATTT
* * * * *
7213945 ATGCCCGAAAGTCTTACA-AATCATG-CACGGAGGTCTTACAGAATCGATTGGGATAACACCGCA
1 ATGCCCGGAGGTCTTACAGAATCATGTC-TGGAGGTCTTACAGAATCGACTGGGATAACACCACA
* * * **
7214008 AGTCGAAAGATAAAGAATCGATCGGGATAACACCGCGAATTAAAATTATATTTGAAGGTCTTAGA
65 AGTCAAAAGATAAAGAATCAATCGGGATAACACCGCAAATTAAAATTATATCCGAAGGTCTTAGA
* * *
7214073 AATCATGCCCGAAGGTCTTACAGAATCGAATGGGATAACACCACAAGTCGAAAGATAAAAAATCA
130 AATCATGCCCGAAGGTCTTACAGAATCGAATAGGATAACACCACAAGTCAAAAAATAAAAAATCA
* *
7214138 ATCGGGATAACACCGTGAATCGAAA-TTATG-CCTGGAAGTCTTAGAAATC
195 ATCGGGATAACACCGCGAATC-AAATTTATGTCC-GGAAGGCTTAGAAATC
* *
7214187 ATGCCCGGAGGTCTTAGAGAATCATGTCTGGAGGTCTTACAGAATCGACTGGGATAACATCACAA
1 ATGCCCGGAGGTCTTACAGAATCATGTCTGGAGGTCTTACAGAATCGACTGGGATAACACCACAA
** * * * * *
7214252 GTCAAAAGATAAAGAATCAATCGGGATAACATTGTAAATTGAATTTATGTCCGGAGGTCTTAGAA
66 GTCAAAAGATAAAGAATCAATCGGGATAACACCGCAAATTAAAATTATATCCGAAGGTCTTAGAA
* * ** *
7214317 ATCATGCCTGAAGGTCTTACAGAATCGACTAGGATAACACCACAAGTCAAAAAATAATGAATCGA
131 ATCATGCCCGAAGGTCTTACAGAATCGAATAGGATAACACCACAAGTCAAAAAATAAAAAATCAA
* *
7214382 TTGGGATAACACCGCGAATCAAATTTATGTCCGGAGGGCTTAGAAATC
196 TCGGGATAACACCGCGAATCAAATTTATGTCCGGAAGGCTTAGAAATC
***
7214430 ATTTTCGGAGGTCTTACAGAATC
1 ATGCCCGGAGGTCTTACAGAATC
7214453 GATTAGGATA
Statistics
Matches: 227, Mismatches: 35, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
242 18 0.08
243 206 0.91
244 3 0.01
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (243 bp):
ATGCCCGGAGGTCTTACAGAATCATGTCTGGAGGTCTTACAGAATCGACTGGGATAACACCACAA
GTCAAAAGATAAAGAATCAATCGGGATAACACCGCAAATTAAAATTATATCCGAAGGTCTTAGAA
ATCATGCCCGAAGGTCTTACAGAATCGAATAGGATAACACCACAAGTCAAAAAATAAAAAATCAA
TCGGGATAACACCGCGAATCAAATTTATGTCCGGAAGGCTTAGAAATC
Found at i:7214543 original size:22 final size:23
Alignment explanation
Indices: 7214518--7214582 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 23
7214508 AATTAAATTT
*
7214518 ATGCCTAG-AGGTTTTAGAAATC
1 ATGCCTAGAAGGTCTTAGAAATC
* *
7214540 ATG-CTCGAAGGTCTTAGACATC
1 ATGCCTAGAAGGTCTTAGAAATC
*
7214562 ATGCC-CGAAGGTCTTAGAAAT
1 ATGCCTAGAAGGTCTTAGAAAT
7214583 AATGTCCGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.08
22 33 0.89
23 1 0.03
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (23 bp):
ATGCCTAGAAGGTCTTAGAAATC
Found at i:7214591 original size:22 final size:21
Alignment explanation
Indices: 7214526--7214608 Score: 85
Period size: 22 Copynumber: 3.8 Consensus size: 21
7214516 TTATGCCTAG
*
7214526 AGGTTTTAGAAATCATGCTCGA
1 AGGTCTTAGAAATCATGC-CGA
*
7214548 AGGTCTTAGACATCATGCCCGA
1 AGGTCTTAGAAATCATG-CCGA
*
7214570 AGGTCTTAGAAATAATGTCCGA
1 AGGTCTTAGAAATCATG-CCGA
* *
7214592 AAGTCTTACAGAATCAT
1 AGGTCTTAGA-AATCAT
7214609 ACCCAGAAGT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
22 45 0.88
23 6 0.12
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (21 bp):
AGGTCTTAGAAATCATGCCGA
Found at i:7214720 original size:22 final size:24
Alignment explanation
Indices: 7214695--7214762 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 24
7214685 AATTAAATTT
* *
7214695 ATGCCT-GGAGGTCTTAGA-AATC
1 ATGCCTCGAAGGTCTTACAGAATC
7214717 ATG-CTCGAAGGTCTTACAGAATC
1 ATGCCTCGAAGGTCTTACAGAATC
* *
7214740 ATGCC-CAAAGGTTTTACAGAATC
1 ATGCCTCGAAGGTCTTACAGAATC
7214763 GACTGGATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 2 0.05
22 13 0.33
23 23 0.59
24 1 0.03
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (24 bp):
ATGCCTCGAAGGTCTTACAGAATC
Found at i:7214743 original size:23 final size:23
Alignment explanation
Indices: 7214703--7214762 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 23
7214693 TTATGCCTGG
* * *
7214703 AGGTCTTAGA-AATCATGCTCGA
1 AGGTCTTACAGAATCATGCCCAA
7214725 AGGTCTTACAGAATCATGCCCAA
1 AGGTCTTACAGAATCATGCCCAA
*
7214748 AGGTTTTACAGAATC
1 AGGTCTTACAGAATC
7214763 GACTGGATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
22 9 0.27
23 24 0.73
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (23 bp):
AGGTCTTACAGAATCATGCCCAA
Found at i:7214754 original size:133 final size:132
Alignment explanation
Indices: 7214570--7215004 Score: 595
Period size: 133 Copynumber: 3.3 Consensus size: 132
7214560 TCATGCCCGA
* * *
7214570 AGGTCTTAGAAATAATGTCCGAAAGTCTTACAGAATCATACCCAGAA-GTTTTACAGAATCGACT
1 AGGTCTTAGAAATCATGT-CGAAGGTCTTACAAAATCATACCCA-AAGGTTTTACAGAATCGACT
* ** * * **
7214634 GAGATAACACCACAAGTCGAAAGATAAAGAATCGATCAAAATAATATCGTGAATTAAATTTATGC
64 GAGATAACACCACAAGTCAAAAGATAAAGAATCGATCAGGATAACATCGCGAATCGAATTTATGC
7214699 CTGG
129 CTGG
* *
7214703 AGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAATCATGCCCAAAGGTTTTACAGAATCGACTG
1 AGGTCTTAGAAATCATG-TCGAAGGTCTTACAAAATCATACCCAAAGGTTTTACAGAATCGACTG
* *
7214768 -GATAACACCACAAGTCAAAATATAAAGAATCGATCGGGATAACATCGCGAATCGAATTTATGCC
65 AGATAACACCACAAGTCAAAAGATAAAGAATCGATCAGGATAACATCGCGAATCGAATTTATGCC
7214832 TGG
130 TGG
* * ** * * * *
7214835 AGGTCTTAGAAATCATGTCCAGAGGTCTTACAAAATCATTCCCGGAGGTCTTACAGAATTGATTA
1 AGGTCTTAGAAATCATGTCGA-AGGTCTTACAAAATCATACCCAAAGGTTTTACAGAATCGACTG
* *
7214900 AGATAACACCACAAGTCAAAAGATAAAGAATCGATTAGGATAACACCGCGAATCGAATTTATGCC
65 AGATAACACCACAAGTCAAAAGATAAAGAATCGATCAGGATAACATCGCGAATCGAATTTATGCC
7214965 TGG
130 TGG
7214968 AGGTCTTAGAAATCATGTTCGAAGGTCTTACAAAATC
1 AGGTCTTAGAAATCATG-TCGAAGGTCTTACAAAATC
7215005 GACTGGATAA
Statistics
Matches: 271, Mismatches: 26, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
131 3 0.01
132 112 0.41
133 152 0.56
134 4 0.01
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (132 bp):
AGGTCTTAGAAATCATGTCGAAGGTCTTACAAAATCATACCCAAAGGTTTTACAGAATCGACTGA
GATAACACCACAAGTCAAAAGATAAAGAATCGATCAGGATAACATCGCGAATCGAATTTATGCCT
GG
Found at i:7214882 original size:23 final size:23
Alignment explanation
Indices: 7214833--7214889 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
7214823 ATTTATGCCT
*
7214833 GGAGGTCTTA-GAAATCATGTCC
1 GGAGGTCTTACAAAATCATGTCC
*
7214855 AGAGGTCTTACAAAATCAT-TCCC
1 GGAGGTCTTACAAAATCATGT-CC
7214878 GGAGGTCTTACA
1 GGAGGTCTTACA
7214890 GAATTGATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.33
23 20 0.67
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (23 bp):
GGAGGTCTTACAAAATCATGTCC
Found at i:7215130 original size:131 final size:133
Alignment explanation
Indices: 7214960--7215444 Score: 558
Period size: 131 Copynumber: 3.7 Consensus size: 133
7214950 AATCGAATTT
* * * * *
7214960 ATGCCTGGAGGTCTTAGA-AATCATGTTCGAAGGTCTTACAAAATCGACT-GGATAACACCACAA
1 ATGCCCGGAGGTCTTACAGAATCATGTCCGAAGGTCTTACAGAATCGACTGGGATAACACCATAA
* *
7215023 GTCAAAAGATAAATAATCGATCGAAATAACATCGTGAATCAAATTTATGCCTGAAGATCTT-GAA
66 GTCAAAAGATAAAGAATCGATCGAGATAACATCGTGAATCAAATTTATGCCTGAAGATCTTAGAA
7215087 ATC
131 ATC
* * * *
7215090 ATGCCCGGAGGTCTTATAGAATTATGTCCGGAGGTCTTACAGAATCGACTAGGATAACACCA-AA
1 ATGCCCGGAGGTCTTACAGAATCATGTCCGAAGGTCTTACAGAATCGACTGGGATAACACCATAA
* * * * *
7215154 GTCAAAAGATAAAGAATCGATTGGGATAACATCGCGAATTAAATTTATACCTGAA-AGTCTTAGA
66 GTCAAAAGATAAAGAATCGATCGAGATAACATCGTGAATCAAATTTATGCCTGAAGA-TCTTAGA
7215218 AATC
130 AATC
* * * * * * *
7215222 ATGCTCGGAGGTTTTACAGAATCGTGCCCGAAGGTCTTACAGACTCGATTGGGATAACACTATAA
1 ATGCCCGGAGGTCTTACAGAATCATGTCCGAAGGTCTTACAGAATCGACTGGGATAACACCATAA
* * * * * * *
7215287 GTCAAAAGATAAAAAATTGATCGGGATAACACCGTGAATCGAATTTATGCCTGGAGGTCTTAGAA
66 GTCAAAAGATAAAGAATCGATCGAGATAACATCGTGAATCAAATTTATGCCTGAAGATCTTAGAA
7215352 ATC
131 ATC
* * * * **
7215355 ATGCTCGGA-----TACAGAATCATATCCGGAGGTCTTACAGAATCGATTGGGATAACATTATAA
1 ATGCCCGGAGGTCTTACAGAATCATGTCCGAAGGTCTTACAGAATCGACTGGGATAACACCATAA
*
7215415 GTCGAAAGATAAAGAATCGATCGAGATAAC
66 GTCAAAAGATAAAGAATCGATCGAGATAAC
7215445 GTCACGAATT
Statistics
Matches: 305, Mismatches: 44, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
128 71 0.23
130 17 0.06
131 81 0.27
132 68 0.22
133 68 0.22
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (133 bp):
ATGCCCGGAGGTCTTACAGAATCATGTCCGAAGGTCTTACAGAATCGACTGGGATAACACCATAA
GTCAAAAGATAAAGAATCGATCGAGATAACATCGTGAATCAAATTTATGCCTGAAGATCTTAGAA
ATC
Found at i:7215242 original size:24 final size:24
Alignment explanation
Indices: 7215215--7215264 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 24
7215205 TGAAAGTCTT
* * *
7215215 AGAAATCATGCTCGGAGGTTTTAC
1 AGAAATCATGCCCGAAGGTCTTAC
*
7215239 AG-AATCGTGCCCGAAGGTCTTAC
1 AGAAATCATGCCCGAAGGTCTTAC
7215262 AGA
1 AGA
7215265 CTCGATTGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
23 19 0.90
24 2 0.10
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (24 bp):
AGAAATCATGCCCGAAGGTCTTAC
Found at i:7215328 original size:373 final size:375
Alignment explanation
Indices: 7214620--7215357 Score: 1070
Period size: 373 Copynumber: 2.0 Consensus size: 375
7214610 CCCAGAAGTT
* * *
7214620 TTACAGAATCGACTGAGATAACACCACAAGTCGAAAGATAAAGAATCGATCAAAATAATATCGTG
1 TTACAAAATCGACTGAGATAACACCACAAGTCAAAAGATAAAGAATCGATCAAAATAACATCGTG
* * * *
7214685 AATTAAATTTATGCCTGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAATCATGCCCAAAG
66 AATCAAATTTATGCCTGAAGATCTTAGAAATCATGCCCGAAGGTCTTACAGAATCATGCCCAAAG
* *
7214750 GTTTTACAGAATCGACTGGATAACACCACAAGTCAAAATATAAAGAATCGATCGGGATAACATCG
131 GTCTTACAGAATCGACTGGATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACATCG
* * * * * *
7214815 CGAATCGAATTTATGCCTGGAGGTCTTAGAAATCATGTCCAGAGGTCTTACAAAATCATTCCCGG
196 CGAATCAAATTTATACCTGAAAGTCTTAGAAATCATGTCCAGAGGTCTTACAAAATCATGCCCGA
* * *
7214880 AGGTCTTACAGAATTGATTAAGATAACACCACAAGTCAAAAGATAAAGAATCGATTAGGATAACA
261 AGGTCTTACAGAATCGATTAAGATAACACCACAAGTCAAAAGATAAAAAATCGATCAGGATAACA
7214945 CCGCGAATCGAATTTATGCCTGGAGGTCTTAGAAATCATGTTCGAAGGTC
326 CCGCGAATCGAATTTATGCCTGGAGGTCTTAGAAATCATGTTCGAAGGTC
* *
7214995 TTACAAAATCGACTG-GATAACACCACAAGTCAAAAGATAAATAATCGATCGAAATAACATCGTG
1 TTACAAAATCGACTGAGATAACACCACAAGTCAAAAGATAAAGAATCGATCAAAATAACATCGTG
* * * * **
7215059 AATCAAATTTATGCCTGAAGATCTT-GAAATCATGCCCGGAGGTCTTATAGAATTATGTCCGGAG
66 AATCAAATTTATGCCTGAAGATCTTAGAAATCATGCCCGAAGGTCTTACAGAATCATGCCCAAAG
*
7215123 GTCTTACAGAATCGACTAGGATAACACCA-AAGTCAAAAGATAAAGAATCGATTGGGATAACATC
131 GTCTTACAGAATCGACT-GGATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACATC
* * * * *
7215187 GCGAATTAAATTTATACCTGAAAGTCTTAGAAATCATG-CTCGGAGGTTTTACAGAATCGTGCCC
195 GCGAATCAAATTTATACCTGAAAGTCTTAGAAATCATGTC-CAGAGGTCTTACAAAATCATGCCC
* ** * * * *
7215251 GAAGGTCTTACAGACTCGATTGGGATAACACTATAAGTCAAAAGATAAAAAATTGATCGGGATAA
259 GAAGGTCTTACAGAATCGATTAAGATAACACCACAAGTCAAAAGATAAAAAATCGATCAGGATAA
*
7215316 CACCGTGAATCGAATTTATGCCTGGAGGTCTTAGAAATCATG
324 CACCGCGAATCGAATTTATGCCTGGAGGTCTTAGAAATCATG
7215358 CTCGGATACA
Statistics
Matches: 321, Mismatches: 40, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
372 1 0.00
373 228 0.71
374 78 0.24
375 14 0.04
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.25
Consensus pattern (375 bp):
TTACAAAATCGACTGAGATAACACCACAAGTCAAAAGATAAAGAATCGATCAAAATAACATCGTG
AATCAAATTTATGCCTGAAGATCTTAGAAATCATGCCCGAAGGTCTTACAGAATCATGCCCAAAG
GTCTTACAGAATCGACTGGATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACATCG
CGAATCAAATTTATACCTGAAAGTCTTAGAAATCATGTCCAGAGGTCTTACAAAATCATGCCCGA
AGGTCTTACAGAATCGATTAAGATAACACCACAAGTCAAAAGATAAAAAATCGATCAGGATAACA
CCGCGAATCGAATTTATGCCTGGAGGTCTTAGAAATCATGTTCGAAGGTC
Found at i:7215354 original size:133 final size:132
Alignment explanation
Indices: 7214978--7215481 Score: 565
Period size: 128 Copynumber: 3.9 Consensus size: 132
7214968 AGGTCTTAGA
* * * *
7214978 AATCATGTTCGAAGGTCTTACAAAATCGACT-GGATAACACCACAAGTCAAAAGATAAATAATCG
1 AATCATGTCCGAAGGTCTTACAGAATCGACTGGGATAACACCATAAGTCAAAAGATAAAGAATCG
* * *
7215042 ATCGAAATAACATCGTGAATCAAATTTATGCCTGAAGATCTT-GAAATCATGCCCGGAGGTCTTA
66 ATCGAGATAACATCGTGAATCAAATTTATGCCTGAAGGTCTTAGAAATCATGCTCGGAGGT-TTA
*
7215106 TAG
130 CAG
* * *
7215109 AATTATGTCCGGAGGTCTTACAGAATCGACTAGGATAACACCA-AAGTCAAAAGATAAAGAATCG
1 AATCATGTCCGAAGGTCTTACAGAATCGACTGGGATAACACCATAAGTCAAAAGATAAAGAATCG
* * * * * *
7215173 ATTGGGATAACATCGCGAATTAAATTTATACCTGAAAGTCTTAGAAATCATGCTCGGAGGTTTTA
66 ATCGAGATAACATCGTGAATCAAATTTATGCCTGAAGGTCTTAGAAATCATGCTCGGAGG-TTTA
7215238 CAG
130 CAG
* * * * * * *
7215241 AATCGTGCCCGAAGGTCTTACAGACTCGATTGGGATAACACTATAAGTCAAAAGATAAAAAATTG
1 AATCATGTCCGAAGGTCTTACAGAATCGACTGGGATAACACCATAAGTCAAAAGATAAAGAATCG
* * * *
7215306 ATCGGGATAACACCGTGAATCGAATTTATGCCTGGAGGTCTTAGAAATCATGCTCGGA----TAC
66 ATCGAGATAACATCGTGAATCAAATTTATGCCTGAAGGTCTTAGAAATCATGCTCGGAGGTTTAC
7215367 AG
131 AG
* * * ** *
7215369 AATCATATCCGGAGGTCTTACAGAATCGATTGGGATAACATTATAAGTCGAAAGATAAAGAATCG
1 AATCATGTCCGAAGGTCTTACAGAATCGACTGGGATAACACCATAAGTCAAAAGATAAAGAATCG
* ** * * * *
7215434 ATCGAGATAACGTCACGAATTAAAATTATGCCAG-AGGTCTTACAAATC
66 ATCGAGATAACATCGTGAATCAAATTTATGCCTGAAGGTCTTAGAAATC
7215482 TCAAAATCTT
Statistics
Matches: 317, Mismatches: 52, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
127 13 0.04
128 86 0.27
131 81 0.26
132 67 0.21
133 70 0.22
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (132 bp):
AATCATGTCCGAAGGTCTTACAGAATCGACTGGGATAACACCATAAGTCAAAAGATAAAGAATCG
ATCGAGATAACATCGTGAATCAAATTTATGCCTGAAGGTCTTAGAAATCATGCTCGGAGGTTTAC
AG
Found at i:7215772 original size:41 final size:41
Alignment explanation
Indices: 7215727--7215831 Score: 160
Period size: 41 Copynumber: 2.6 Consensus size: 41
7215717 TTCTGATGAA
7215727 GGTTCC-CTCTAAACAGAGGCTTTGAAATCTTGATTGA-AATC
1 GGTTCCTCT-TAAACAGAGGCTTTGAAATCTTGATTGAGAA-C
7215768 GGTTCCTCTTAAACAGAGGCTTTGAAATCTTGATTGAGAAC
1 GGTTCCTCTTAAACAGAGGCTTTGAAATCTTGATTGAGAAC
* *
7215809 GGTTCTTCTTAAACAGAGACTTT
1 GGTTCCTCTTAAACAGAGGCTTT
7215832 AAAACTTTAA
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
41 56 0.93
42 4 0.07
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (41 bp):
GGTTCCTCTTAAACAGAGGCTTTGAAATCTTGATTGAGAAC
Found at i:7217556 original size:11 final size:10
Alignment explanation
Indices: 7217531--7217555 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7217521 GAATATGTCA
7217531 TTTTTGTTTT
1 TTTTTGTTTT
7217541 TTTTTGTTTT
1 TTTTTGTTTT
7217551 TTTTT
1 TTTTT
7217556 TTTATGCCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (10 bp):
TTTTTGTTTT
Found at i:7218137 original size:8 final size:8
Alignment explanation
Indices: 7218126--7218157 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
7218116 TCTTTTTCTC
7218126 TTTTTTTA
1 TTTTTTTA
7218134 TTTTTTTTA
1 -TTTTTTTA
7218143 TTTTTTTA
1 TTTTTTTA
7218151 TTTTTTT
1 TTTTTTT
7218158 GTGAAAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91
Consensus pattern (8 bp):
TTTTTTTA
Found at i:7218138 original size:9 final size:9
Alignment explanation
Indices: 7218126--7218157 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
7218116 TCTTTTTCTC
7218126 TTTTTTTAT
1 TTTTTTTAT
7218135 TTTTTTTA-
1 TTTTTTTAT
7218143 TTTTTTTAT
1 TTTTTTTAT
7218152 TTTTTT
1 TTTTTT
7218158 GTGAAAGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:7222440 original size:9 final size:9
Alignment explanation
Indices: 7222417--7222454 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
7222407 GCACACAATC
*
7222417 AAAAAATAT
1 AAAAAATAA
*
7222426 ATAAAATAA
1 AAAAAATAA
7222435 AAAAAATAA
1 AAAAAATAA
7222444 AAAAAATAA
1 AAAAAATAA
7222453 AA
1 AA
7222455 TGACTCGAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (9 bp):
AAAAAATAA
Found at i:7226084 original size:22 final size:23
Alignment explanation
Indices: 7226044--7226087 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
7226034 TTATTATTAT
*
7226044 TAATAATAATTAGATATTTATCC
1 TAATAATAATTAGAAATTTATCC
*
7226067 TAATAA-ATTTAGAAATTTATC
1 TAATAATAATTAGAAATTTATC
7226088 ATGCAAGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (23 bp):
TAATAATAATTAGAAATTTATCC
Found at i:7227192 original size:22 final size:25
Alignment explanation
Indices: 7227146--7227194 Score: 68
Period size: 22 Copynumber: 2.1 Consensus size: 25
7227136 TGTTTTTTGT
7227146 TTTTTTATATAATTAATAATTATTA
1 TTTTTTATATAATTAATAATTATTA
*
7227171 TTTTTT-TA-AATTAGT-ATTATTA
1 TTTTTTATATAATTAATAATTATTA
7227193 TT
1 TT
7227195 ATTAAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 9 0.39
23 6 0.26
24 2 0.09
25 6 0.26
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (25 bp):
TTTTTTATATAATTAATAATTATTA
Found at i:7227555 original size:110 final size:109
Alignment explanation
Indices: 7227358--7227688 Score: 446
Period size: 110 Copynumber: 3.0 Consensus size: 109
7227348 AAACACAAAA
* * * * * * *
7227358 CGATTGGGATGACACCATAAGTCAAAAAATAATGAATTGATCGAGATAACATCGCGAATCGAATT
1 CGATTGGGATAACACCACAAGTCGAAAGATAAAGAATCGATCGAGATAACATCGCGAATCGAAAT
*
7227423 TATGCCCGAAAGTCTTACAAATCATGCACGGAGGTCTTACAGAAT
66 TATG-CCGAAAGTCTTAGAAATCATGCACGGAGGTCTTACAGAAT
* *
7227468 CGATTGGGATAACACCGCAAGTCGAAAGATAAAGAATCGATCGAGATAACATCGCGAATTGAAAT
1 CGATTGGGATAACACCACAAGTCGAAAGATAAAGAATCGATCGAGATAACATCGCGAATCGAAAT
* * * *
7227533 TATGTTCGAAGGTCTTAGAAATCATGCCCGGAGGTCTTACAAAAT
66 TATG-CCGAAAGTCTTAGAAATCATGCACGGAGGTCTTACAGAAT
* * * * *
7227578 CAACTGGGTTAACACCACAAGTCGAAAGATAAAGAATCGATCGGGATAACACCGCGAATCGAAAT
1 CGATTGGGATAACACCACAAGTCGAAAGATAAAGAATCGATCGAGATAACATCGCGAATCGAAAT
* *
7227643 TATGCCTGAAAGTCTTAGAAATCATGCTCGGAGGTCTTAGAGAAT
66 TATGCC-GAAAGTCTTAGAAATCATGCACGGAGGTCTTACAGAAT
7227688 C
1 C
7227689 ATGTTTAAAG
Statistics
Matches: 193, Mismatches: 27, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
109 1 0.01
110 192 0.99
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.22
Consensus pattern (109 bp):
CGATTGGGATAACACCACAAGTCGAAAGATAAAGAATCGATCGAGATAACATCGCGAATCGAAAT
TATGCCGAAAGTCTTAGAAATCATGCACGGAGGTCTTACAGAAT
Found at i:7227739 original size:133 final size:133
Alignment explanation
Indices: 7227528--7228092 Score: 595
Period size: 133 Copynumber: 4.3 Consensus size: 133
7227518 ATCGCGAATT
* * * * * * * * *
7227528 GAAATTATGTTCGAAGGTCTTAGA-AATCATGCCCGGAGGTCTTACAAAATCAACTGGGTTAACA
1 GAAATCATGCTCGGAGGTCTTAGAGAATCATGTCTGAAGGTCTTACAGAATCGACTGGGATAACA
* *
7227592 CCACAAGTCGAAAGATAAAGAATCGATCGGGATAACACCGCGAATCGAAA-TTATGCCTGAAAGT
66 CCACAAGTCAAAAGATAAAGAATCGATCGGGATAACACCGCGAATC-AAATTTATGCCCGAAAGT
7227656 CTTA
130 CTTA
* * *
7227660 GAAATCATGCTCGGAGGTCTTAGAGAATCATGTTTAAAGATCTTACAGAATCGACTGGGATAACA
1 GAAATCATGCTCGGAGGTCTTAGAGAATCATGTCTGAAGGTCTTACAGAATCGACTGGGATAACA
* * ** * * *
7227725 TCACAAGTCAAAAGATAAAGAATCGATCGGGATAACATCGTAAATTAAATTTATGCCCGGAGGTC
66 CCACAAGTCAAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAATTTATGCCCGAAAGTC
7227790 TTA
131 TTA
* * *
7227793 GAAATCATGC-CTGGAGGTCTTATAGAATCATGCCCGAAGGTCTT-----A-C-A---GGATAAC
1 GAAATCATGCTC-GGAGGTCTTAGAGAATCATGTCTGAAGGTCTTACAGAATCGACTGGGATAAC
* * * ** * * *
7227847 ACCATAAGTCAAAAAATAATGAATCGATTAGGATAACACCGCGAATCAAATTTATGCCCGGAGGG
65 ACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAATTTATGCCCGAAAGT
7227912 CTTA
130 CTTA
* * * *
7227916 GAAATCATG-TCCGGAGGTCTTACAGAATCATGTCTGGAGGTCTTACAGAATCGATTAGGATAAC
1 GAAATCATGCT-CGGAGGTCTTAGAGAATCATGTCTGAAGGTCTTACAGAATCGACTGGGATAAC
* *
7227980 ACCACAAGTCAAAAGAAAAAGAATCGATCGGGATAACACCGTGAATCAAATTTATGCCC-AAAGG
65 ACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAATTTATGCCCGAAA-G
*
7228044 TTTTA
129 TCTTA
* * * *
7228049 GAAATCATGCCCGGAGGTCTTAGA-CATCATGCCCGAAGGTCTTA
1 GAAATCATGCTCGGAGGTCTTAGAGAATCATGTCTGAAGGTCTTA
7228093 GAAATAATGC
Statistics
Matches: 357, Mismatches: 59, Indels: 34
0.79 0.13 0.08
Matches are distributed among these distances:
123 102 0.29
124 1 0.00
126 1 0.00
127 1 0.00
128 2 0.01
129 1 0.00
130 1 0.00
132 42 0.12
133 206 0.58
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (133 bp):
GAAATCATGCTCGGAGGTCTTAGAGAATCATGTCTGAAGGTCTTACAGAATCGACTGGGATAACA
CCACAAGTCAAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAATTTATGCCCGAAAGTC
TTA
Found at i:7227802 original size:22 final size:23
Alignment explanation
Indices: 7227777--7227837 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
7227767 AATTAAATTT
7227777 ATGCCCGGAGGTCTTAGA-AATC
1 ATGCCCGGAGGTCTTAGAGAATC
* *
7227799 ATGCCTGGAGGTCTTATAGAATC
1 ATGCCCGGAGGTCTTAGAGAATC
*
7227822 ATGCCCGAAGGTCTTA
1 ATGCCCGGAGGTCTTA
7227838 CAGGATAACA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 16 0.47
23 18 0.53
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (23 bp):
ATGCCCGGAGGTCTTAGAGAATC
Found at i:7227948 original size:23 final size:23
Alignment explanation
Indices: 7227904--7227967 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
7227894 AAATTTATGC
* *
7227904 CCGGAGGGCTTAGA-AATCATGT
1 CCGGAGGTCTTACAGAATCATGT
7227926 CCGGAGGTCTTACAGAATCATGT
1 CCGGAGGTCTTACAGAATCATGT
*
7227949 CTGGAGGTCTTACAGAATC
1 CCGGAGGTCTTACAGAATC
7227968 GATTAGGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
22 12 0.32
23 26 0.68
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (23 bp):
CCGGAGGTCTTACAGAATCATGT
Found at i:7228052 original size:256 final size:255
Alignment explanation
Indices: 7227587--7228092 Score: 721
Period size: 256 Copynumber: 2.0 Consensus size: 255
7227577 TCAACTGGGT
* * * *
7227587 TAACACCACAAGTCGAAAGATAAAGAATCGATCGGGATAACACCGCGAATCGAAATTATGCCTGA
1 TAACACCACAAGTCAAAAAATAAAGAATCGATCAGGATAACACCGCGAATCGAAATTATGCCCGA
* * * *
7227652 AAGTCTTAGAAATCATGCTCGGAGGTCTTAGAGAATCATGTTTAAAGATCTTACAGAATCGACTG
66 AAGGCTTAGAAATCATGCTCGGAGGTCTTACAGAATCATGTCTAAAGATCTTACAGAATCGACTA
* * * *
7227717 GGATAACATCACAAGTCAAAAGATAAAGAATCGATCGGGATAACATCGTAAATTAAATTTATGCC
131 GGATAACACCACAAGTCAAAAGAAAAAGAATCGATCGGGATAACACCGTAAATCAAATTTATGCC
** *
7227782 CGGAGGTCTTAGAAATCATGCCTGGAGGTCTTATAGA-ATCATGCCCGAAGGTCTTACAGGA
196 CAAAGGTCTTAGAAATCATGCCCGGAGGTC-T-TAGACATCATGCCCGAAGGTCTTACAGGA
* * *
7227843 TAACACCATAAGTCAAAAAATAATGAATCGATTAGGATAACACCGCGAATC-AAATTTATGCCCG
1 TAACACCACAAGTCAAAAAATAAAGAATCGATCAGGATAACACCGCGAATCGAAA-TTATGCCCG
* * ** * *
7227907 GAGGGCTTAGAAATCATG-TCCGGAGGTCTTACAGAATCATGTCTGGAGGTCTTACAGAATCGAT
65 AAAGGCTTAGAAATCATGCT-CGGAGGTCTTACAGAATCATGTCTAAAGATCTTACAGAATCGAC
*
7227971 TAGGATAACACCACAAGTCAAAAGAAAAAGAATCGATCGGGATAACACCGTGAATCAAATTTATG
129 TAGGATAACACCACAAGTCAAAAGAAAAAGAATCGATCGGGATAACACCGTAAATCAAATTTATG
*
7228036 CCCAAAGGTTTTAGAAATCATGCCCGGAGGTCTTAGACATCATGCCCGAAGGTCTTA
194 CCCAAAGGTCTTAGAAATCATGCCCGGAGGTCTTAGACATCATGCCCGAAGGTCTTA
7228093 GAAATAATGC
Statistics
Matches: 221, Mismatches: 26, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
254 4 0.02
255 24 0.11
256 193 0.87
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (255 bp):
TAACACCACAAGTCAAAAAATAAAGAATCGATCAGGATAACACCGCGAATCGAAATTATGCCCGA
AAGGCTTAGAAATCATGCTCGGAGGTCTTACAGAATCATGTCTAAAGATCTTACAGAATCGACTA
GGATAACACCACAAGTCAAAAGAAAAAGAATCGATCGGGATAACACCGTAAATCAAATTTATGCC
CAAAGGTCTTAGAAATCATGCCCGGAGGTCTTAGACATCATGCCCGAAGGTCTTACAGGA
Found at i:7228058 original size:22 final size:22
Alignment explanation
Indices: 7228033--7228126 Score: 107
Period size: 22 Copynumber: 4.2 Consensus size: 22
7228023 AATCAAATTT
* *
7228033 ATGCCCAAAGGTTTTAGAAATC
1 ATGCCCGAAGGTCTTAGAAATC
* *
7228055 ATGCCCGGAGGTCTTAGACATC
1 ATGCCCGAAGGTCTTAGAAATC
*
7228077 ATGCCCGAAGGTCTTAGAAATA
1 ATGCCCGAAGGTCTTAGAAATC
* * *
7228099 ATGCCTGAAAGTCTTACAGAATC
1 ATGCCCGAAGGTCTTAGA-AATC
7228122 ATGCC
1 ATGCC
7228127 TAGAAGTTTT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
22 52 0.87
23 8 0.13
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.24
Consensus pattern (22 bp):
ATGCCCGAAGGTCTTAGAAATC
Found at i:7228121 original size:177 final size:177
Alignment explanation
Indices: 7227900--7228270 Score: 451
Period size: 177 Copynumber: 2.1 Consensus size: 177
7227890 AATCAAATTT
* * * * * * * * *
7227900 ATGCCCGGAGGGCTTAGAAATCATGTCCGGAGGTCTTACAGAATCATGTCTGGAGGTCTTACAGA
1 ATGCCCGAAGGTCTTAGAAATAATGTCCGAAAGTCTTACAGAATCATGCCTAGAAGTCTTACAAA
* ***
7227965 ATCGA-TTAGGATAACACCACAAGTCAAAAGAAAAAGAATCGATCGGGATAACACCGTGAATCAA
66 ATCGACTGA-GATAACACCACAAGTCAAAAGAAAAAGAATCGATCAAAATAACACCGTGAATCAA
* *
7228029 ATTTATGCCCAAAGGTTTTAGAAATCATGCCCGGAGGTCTT-AGACATC
130 ATTTATGCCCAAAGGTCTTAGAAATCATGCCCGAAGGTCTTAAGA-ATC
*
7228077 ATGCCCGAAGGTCTTAGAAATAATG-CCTGAAAGTCTTACAGAATCATGCCTAGAAGTTTTACAA
1 ATGCCCGAAGGTCTTAGAAATAATGTCC-GAAAGTCTTACAGAATCATGCCTAGAAGTCTTACAA
* * * *
7228141 AATCGACTGAGATAACACCACAAGTCGAAAGATAAAGAATCGATCAAAATAATACCGTGAATTAA
65 AATCGACTGAGATAACACCACAAGTCAAAAGAAAAAGAATCGATCAAAATAACACCGTGAATCAA
*** *
7228206 ATTTATGCCTGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAATC
130 ATTTATGCCCAAAGGTCTTAGAAATCATGCCCGAAGGTCTTA-AGAATC
**
7228255 ATGCCTAAAGGTCTTA
1 ATGCCCGAAGGTCTTA
7228271 CAGAATCGAC
Statistics
Matches: 164, Mismatches: 26, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
176 2 0.01
177 140 0.85
178 19 0.12
179 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (177 bp):
ATGCCCGAAGGTCTTAGAAATAATGTCCGAAAGTCTTACAGAATCATGCCTAGAAGTCTTACAAA
ATCGACTGAGATAACACCACAAGTCAAAAGAAAAAGAATCGATCAAAATAACACCGTGAATCAAA
TTTATGCCCAAAGGTCTTAGAAATCATGCCCGAAGGTCTTAAGAATC
Found at i:7228127 original size:23 final size:22
Alignment explanation
Indices: 7228050--7228141 Score: 69
Period size: 22 Copynumber: 4.1 Consensus size: 22
7228040 AAGGTTTTAG
* * * *
7228050 AAATCATGCCCGGAGGTCTTAG
1 AAATCATGCCTGAAAGTCTTAC
* * * *
7228072 ACATCATGCCCGAAGGTCTTAG
1 AAATCATGCCTGAAAGTCTTAC
*
7228094 AAATAATGCCTGAAAGTCTTAC
1 AAATCATGCCTGAAAGTCTTAC
*
7228116 AGAATCATGCCT-AGAAGTTTTAC
1 A-AATCATGCCTGA-AAGTCTTAC
7228139 AAA
1 AAA
7228142 ATCGACTGAG
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
22 41 0.69
23 18 0.31
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.25
Consensus pattern (22 bp):
AAATCATGCCTGAAAGTCTTAC
Found at i:7228144 original size:23 final size:23
Alignment explanation
Indices: 7228074--7228144 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 23
7228064 GGTCTTAGAC
* * *
7228074 ATCATGCCCGAAGGTCTTA-GAA
1 ATCATGCCTGAAAGTCTTACAAA
* *
7228096 ATAATGCCTGAAAGTCTTACAGA
1 ATCATGCCTGAAAGTCTTACAAA
*
7228119 ATCATGCCT-AGAAGTTTTACAAA
1 ATCATGCCTGA-AAGTCTTACAAA
7228142 ATC
1 ATC
7228145 GACTGAGATA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
22 17 0.44
23 22 0.56
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (23 bp):
ATCATGCCTGAAAGTCTTACAAA
Found at i:7228235 original size:22 final size:23
Alignment explanation
Indices: 7228210--7228277 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
7228200 AATTAAATTT
* *
7228210 ATGCCTGGAGGTCTTAGA-AATC
1 ATGCCTGAAGGTCTTACAGAATC
7228232 ATG-CTCGAAGGTCTTACAGAATC
1 ATGCCT-GAAGGTCTTACAGAATC
*
7228255 ATGCCTAAAGGTCTTACAGAATC
1 ATGCCTGAAGGTCTTACAGAATC
7228278 GACTAGATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
21 2 0.05
22 13 0.32
23 23 0.57
24 2 0.05
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (23 bp):
ATGCCTGAAGGTCTTACAGAATC
Found at i:7228355 original size:132 final size:132
Alignment explanation
Indices: 7228085--7228519 Score: 552
Period size: 133 Copynumber: 3.3 Consensus size: 132
7228075 TCATGCCCGA
* * * * *
7228085 AGGTCTTAGAAATAATGCCTGAAAGTCTTACAGAATCATGCCTAGAA-GTTTTACAAAATCGACT
1 AGGTCTTAGAAATCATGCC-GAAGGTCTTACAAAATCATGCCTA-AAGGTCTTACAGAATCGACT
* * * * * * *
7228149 GAGATAACACCACAAGTCGAAAGATAAAGAATCGATCAAAATAATACCGTGAATTAAATTTATGC
64 AAGATAACACCACAAGTCAAAAGATAAAGAATCGATCGAGATAACACCGCGAATCAAATTTATGC
7228214 CTGG
129 CTGG
*
7228218 AGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAATCATGCCTAAAGGTCTTACAGAATCGACT-
1 AGGTCTTAGAAATCATGC-CGAAGGTCTTACAAAATCATGCCTAAAGGTCTTACAGAATCGACTA
* *
7228282 AGATAACACCACAAGTCAAAATATAAAGAATTGATCGAGATAACACCGCGAATCAAATTTATGCC
65 AGATAACACCACAAGTCAAAAGATAAAGAATCGATCGAGATAACACCGCGAATCAAATTTATGCC
7228347 TGG
130 TGG
* * *** * * *
7228350 AGGTCTTAGAAATCATGCCCAGAGGTCTTACAAAATCATTCCCGGAGGTCTTATAGAATTGATTA
1 AGGTCTTAGAAATCATGCCGA-AGGTCTTACAAAATCATGCCTAAAGGTCTTACAGAATCGACTA
* * *
7228415 AGATAACACCACAAGTCAAAAGATAAAAAATCGATCGGGATAACACCGCGAATCGAATTTATG-C
65 AGATAACACCACAAGTCAAAAGATAAAGAATCGATCGAGATAACACCGCGAATCAAATTTATGCC
7228479 TCGG
130 T-GG
*
7228483 AGGTCTTAGAAATCATAACCGAAGGTCTTACAAAATC
1 AGGTCTTAGAAATCAT-GCCGAAGGTCTTACAAAATC
7228520 GACTGGATAA
Statistics
Matches: 268, Mismatches: 28, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
131 2 0.01
132 116 0.43
133 146 0.54
134 4 0.01
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (132 bp):
AGGTCTTAGAAATCATGCCGAAGGTCTTACAAAATCATGCCTAAAGGTCTTACAGAATCGACTAA
GATAACACCACAAGTCAAAAGATAAAGAATCGATCGAGATAACACCGCGAATCAAATTTATGCCT
GG
Found at i:7228367 original size:22 final size:23
Alignment explanation
Indices: 7228342--7228402 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
7228332 AATCAAATTT
* *
7228342 ATGCCTGGAGGTCTTA-GAAATC
1 ATGCCCGGAGGTCTTACAAAATC
*
7228364 ATGCCCAGAGGTCTTACAAAATC
1 ATGCCCGGAGGTCTTACAAAATC
*
7228387 ATTCCCGGAGGTCTTA
1 ATGCCCGGAGGTCTTA
7228403 TAGAATTGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
22 14 0.42
23 19 0.58
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (23 bp):
ATGCCCGGAGGTCTTACAAAATC
Found at i:7228476 original size:442 final size:433
Alignment explanation
Indices: 7227644--7228512 Score: 1138
Period size: 442 Copynumber: 2.0 Consensus size: 433
7227634 AATCGAAATT
* * * * * ** *
7227644 ATGCCTGAAAGTCTTAGAAATCATGCTCGGAGGTCTTAGAGAATCATGTTTAAAGATCTTACAGA
1 ATGCCCGAAAGTCTTAGAAATAATGCTCGAAAGTCTTACAGAATCATGCCTAAAGATCTTACAAA
* * *** *
7227709 ATCGACTGGGATAACATCACAAGTCAAAAGATAAAGAATCGATCGGGATAACATCGTAAATTAAA
66 ATCGACTGAGATAACACCACAAGTCAAAAGATAAAGAATCGATCAAAATAACACCGTAAATTAAA
* * *
7227774 TTTATGCCCGGAGGTCTTAGAAATCATGCCTGGAGGTCTTATAGAATCATGCCCGAAGGTCTTAC
131 TTTATGCCCGGAGGTCTTAGAAATCATGCCTGAAGGTCTTACAGAATCATGCCCAAAGGTCTTAC
* * *
7227839 AGGATAACACCATAAGTCAAAAAATAATGAATCGATTAGGATAACACCGCGAATCAAATTTATGC
196 AGGATAACACCACAAGTCAAAAAATAAAGAATCGATGAGGATAACACCGCGAATCAAATTTATGC
* * * *
7227904 CCGGAGGGCTTAGAAATCATGTCCGGAGGTCTTACAGAATCATGTCTGGAGGTCTTACAGAATCG
261 CCGGAGGGCTTAGAAATCATGCCCAGAGGTCTTACAAAATCATGTCCGGAGGTCTTACAGAATCG
* *
7227969 ATTAGGATAACACCACAAGTCAAAAGAAAAAGAATCGATCGGGATAACACCGTGAATCAAATTTA
326 ATTAAGATAACACCACAAGTCAAAAGAAAAAGAATCGATCGGGATAACACCGCGAATCAAATTTA
* ** *
7228034 TGCCCAAAGGTTTTAGAAATCATGCCCGGAGGTCTTAGACATC
391 TGCCCAAAGGTCTTAGAAATCATAACCGAAGGTCTTAGACATC
* *
7228077 ATGCCCGAAGGTCTTAGAAATAATGC-CTGAAAGTCTTACAGAATCATGCCTAGAAG-TTTTACA
1 ATGCCCGAAAGTCTTAGAAATAATGCTC-GAAAGTCTTACAGAATCATGCCTA-AAGATCTTACA
* * *
7228140 AAATCGACTGAGATAACACCACAAGTCGAAAGATAAAGAATCGATCAAAATAATACCGTGAATTA
64 AAATCGACTGAGATAACACCACAAGTCAAAAGATAAAGAATCGATCAAAATAACACCGTAAATTA
* *
7228205 AATTTATGCCTGGAGGTCTTAGAAATCATG-CTCGAAGGTCTTACAGAATCATGCCTAAAGGTCT
129 AATTTATGCCCGGAGGTCTTAGAAATCATGCCT-GAAGGTCTTACAGAATCATGCCCAAAGGTCT
* *
7228269 TACAGAATCGACTAGATAACACCACAAGTCAAAATATAAAGAATTGATCGA-GATAACACCGCGA
193 TAC---A--G----GATAACACCACAAGTCAAAAAATAAAGAATCGAT-GAGGATAACACCGCGA
* *
7228333 ATCAAATTTATGCCTGGAGGTCTTAGAAATCATGCCCAGAGGTCTTACAAAATCAT-TCCCGGAG
248 ATCAAATTTATGCCCGGAGGGCTTAGAAATCATGCCCAGAGGTCTTACAAAATCATGT-CCGGAG
* *
7228397 GTCTTATAGAATTGATTAAGATAACACCACAAGTCAAAAGATAAAA-AATCGATCGGGATAACAC
312 GTCTTACAGAATCGATTAAGATAACACCACAAGTCAAAAGA-AAAAGAATCGATCGGGATAACAC
* * **
7228461 CGCGAATCGAATTTATGCTCGGAGGTCTTAGAAATCATAACCGAAGGTCTTA
376 CGCGAATCAAATTTATGCCCAAAGGTCTTAGAAATCATAACCGAAGGTCTTA
7228513 CAAAATCGAC
Statistics
Matches: 374, Mismatches: 47, Indels: 21
0.85 0.11 0.05
Matches are distributed among these distances:
432 3 0.01
433 162 0.43
434 3 0.01
436 1 0.00
438 1 0.00
441 1 0.00
442 198 0.53
443 5 0.01
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.24
Consensus pattern (433 bp):
ATGCCCGAAAGTCTTAGAAATAATGCTCGAAAGTCTTACAGAATCATGCCTAAAGATCTTACAAA
ATCGACTGAGATAACACCACAAGTCAAAAGATAAAGAATCGATCAAAATAACACCGTAAATTAAA
TTTATGCCCGGAGGTCTTAGAAATCATGCCTGAAGGTCTTACAGAATCATGCCCAAAGGTCTTAC
AGGATAACACCACAAGTCAAAAAATAAAGAATCGATGAGGATAACACCGCGAATCAAATTTATGC
CCGGAGGGCTTAGAAATCATGCCCAGAGGTCTTACAAAATCATGTCCGGAGGTCTTACAGAATCG
ATTAAGATAACACCACAAGTCAAAAGAAAAAGAATCGATCGGGATAACACCGCGAATCAAATTTA
TGCCCAAAGGTCTTAGAAATCATAACCGAAGGTCTTAGACATC
Found at i:7228531 original size:242 final size:241
Alignment explanation
Indices: 7228262--7228739 Score: 663
Period size: 242 Copynumber: 2.0 Consensus size: 241
7228252 ATCATGCCTA
* * *
7228262 AAGGTCTTACAGAATCGACTAGATAACACCACAAGTCAAAATATAAAGAATTGATCGAGATAACA
1 AAGGTCTTACAAAATCGACTAGATAACACCACAAGTCAAAAGATAAAGAATCGATCGAGATAACA
* * * *
7228327 CCGCGAATCAAATTTATGC-CTGGAGGTCTTAGAAATCATGCCCAGAGGTCTTACAAAATCATTC
66 CCGCGAATCAAATTTATGCTC-GAAGATCTTAGAAATCATACCCAGAGGTCTTACAAAATCATGC
* ** *
7228391 CCGGAGGTCTTATAGAATTGATTAAGATAACACCACAAGTCAAAAGATAAAAAATCGATCGGGAT
130 CCGGAGGTCTTACAGAATCAACTAAGATAACACCA-AAGTCAAAAGATAAAAAATCGATCGGGAT
* * * *
7228456 AACACCGCGAATCGAATTTAT-GCTCGGAGGTCTTAGAAATCATAACCG
194 AACACCGCGAATCAAATTTATACCT-GAAAGTCTTAGAAATCATAACCG
* * * * *
7228504 AAGGTCTTACAAAATCGACTGGATAACATCACAAGTTAAAAGATAAATAATCGATCGGGATAACA
1 AAGGTCTTACAAAATCGACTAGATAACACCACAAGTCAAAAGATAAAGAATCGATCGAGATAACA
* * * * *
7228569 CCGTGAATCAAATTTATGCTCGAAGATCTTAGAAATCATACCCGGAGGTCTTATAGAATTATGCC
66 CCGCGAATCAAATTTATGCTCGAAGATCTTAGAAATCATACCCAGAGGTCTTACAAAATCATGCC
* *
7228634 CGGAGGTCTTACAGAATCAACTAGGATAACACCAAAGTCAAAAGATAAAGAATCGATCGGGATAA
131 CGGAGGTCTTACAGAATCAACTAAGATAACACCAAAGTCAAAAGATAAAAAATCGATCGGGATAA
*
7228699 CATCGCGAATCAAATTTATACCTGAAAGTCTTAGAAATCAT
196 CACCGCGAATCAAATTTATACCTGAAAGTCTTAGAAATCAT
7228740 GCTCGGAGGT
Statistics
Matches: 206, Mismatches: 28, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
241 63 0.31
242 142 0.69
243 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (241 bp):
AAGGTCTTACAAAATCGACTAGATAACACCACAAGTCAAAAGATAAAGAATCGATCGAGATAACA
CCGCGAATCAAATTTATGCTCGAAGATCTTAGAAATCATACCCAGAGGTCTTACAAAATCATGCC
CGGAGGTCTTACAGAATCAACTAAGATAACACCAAAGTCAAAAGATAAAAAATCGATCGGGATAA
CACCGCGAATCAAATTTATACCTGAAAGTCTTAGAAATCATAACCG
Found at i:7228545 original size:109 final size:109
Alignment explanation
Indices: 7228416--7228621 Score: 331
Period size: 109 Copynumber: 1.9 Consensus size: 109
7228406 AATTGATTAA
*
7228416 GATAACACCACAAGTCAAAAGATAAAAAATCGATCGGGATAACACCGCGAATCGAATTTATGCTC
1 GATAACACCACAAGTCAAAAGATAAAAAATCGATCGGGATAACACCGCGAATCAAATTTATGCTC
* *
7228481 GGAGGTCTTAGAAATCATAACCGAAGGTCTTACAAAATCGACTG
66 GAAGATCTTAGAAATCATAACCGAAGGTCTTACAAAATCGACTG
* * * *
7228525 GATAACATCACAAGTTAAAAGATAAATAATCGATCGGGATAACACCGTGAATCAAATTTATGCTC
1 GATAACACCACAAGTCAAAAGATAAAAAATCGATCGGGATAACACCGCGAATCAAATTTATGCTC
* *
7228590 GAAGATCTTAGAAATCATACCCGGAGGTCTTA
66 GAAGATCTTAGAAATCATAACCGAAGGTCTTA
7228622 TAGAATTATG
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
109 88 1.00
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.22
Consensus pattern (109 bp):
GATAACACCACAAGTCAAAAGATAAAAAATCGATCGGGATAACACCGCGAATCAAATTTATGCTC
GAAGATCTTAGAAATCATAACCGAAGGTCTTACAAAATCGACTG
Found at i:7228620 original size:22 final size:23
Alignment explanation
Indices: 7228595--7228652 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
7228585 TGCTCGAAGA
7228595 TCTTAGA-AATCATACCCGGAGG
1 TCTTAGAGAATCATACCCGGAGG
* * *
7228617 TCTTATAGAATTATGCCCGGAGG
1 TCTTAGAGAATCATACCCGGAGG
*
7228640 TCTTACAGAATCA
1 TCTTAGAGAATCA
7228653 ACTAGGATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 6 0.20
23 24 0.80
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
TCTTAGAGAATCATACCCGGAGG
Found at i:7228747 original size:132 final size:132
Alignment explanation
Indices: 7228475--7228960 Score: 531
Period size: 132 Copynumber: 3.7 Consensus size: 132
7228465 AATCGAATTT
* * *
7228475 ATGCTCGGAGGTCTTAGA-AATCATAACCGAAGGTCTTACAAAATCGACT-GGATAACATCACAA
1 ATGCTCGGAGGTCTTAAAGAATCATACCCGAAGGTCTTACAAAATCGACTGGGATAACACCACAA
* * *
7228538 GTTAAAAGATAAATAATCGATCGGGATAACACCGTGAATCAAATTTATGCTCG-AAGATCTTAGA
66 GTCAAAAGATAAAGAATCGATCGGGATAACACCGTGAATCAAATTTATCCT-GAAAG-TCTTAGA
7228602 AATC
129 AATC
* * * * * * * * *
7228606 ATACCCGGAGGTCTTATAGAATTATGCCCGGAGGTCTTACAGAATCAACTAGGATAACACCA-AA
1 ATGCTCGGAGGTCTTAAAGAATCATACCCGAAGGTCTTACAAAATCGACTGGGATAACACCACAA
* *
7228670 GTCAAAAGATAAAGAATCGATCGGGATAACATCGCGAATCAAATTTATACCTGAAAGTCTTAGAA
66 GTCAAAAGATAAAGAATCGATCGGGATAACACCGTGAATCAAATTTAT-CCTGAAAGTCTTAGAA
7228735 ATC
130 ATC
* * * * * * *
7228738 ATGCTCGGAGGTTTTAAAGAATCGTGCCCGAAGGTCTTATAGACTCGATTGGGATAACACCACAA
1 ATGCTCGGAGGTCTTAAAGAATCATACCCGAAGGTCTTACAAAATCGACTGGGATAACACCACAA
* * * * * *
7228803 GTCAAAAGATAAAAAATCGATCGAGATAACACCGTGAATCGAATTTATGCCCGAAGGTCATAGAA
66 GTCAAAAGATAAAGAATCGATCGGGATAACACCGTGAATCAAATTTAT-CCTGAAAGTCTTAGAA
7228868 ATC
130 ATC
* * * * ** *
7228871 ATGCTC--A-G--ATACAGAATCATACCCGAAGGTCTTATAAAATCGATTGGGATAACATTATAA
1 ATGCTCGGAGGTCTTAAAGAATCATACCCGAAGGTCTTACAAAATCGACTGGGATAACACCACAA
*
7228931 GTCGAAAGATAAAGAATCGATCGGGATAAC
66 GTCAAAAGATAAAGAATCGATCGGGATAAC
7228961 GTCATGAATT
Statistics
Matches: 302, Mismatches: 48, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
128 70 0.23
130 1 0.00
131 16 0.05
132 133 0.44
133 82 0.27
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (132 bp):
ATGCTCGGAGGTCTTAAAGAATCATACCCGAAGGTCTTACAAAATCGACTGGGATAACACCACAA
GTCAAAAGATAAAGAATCGATCGGGATAACACCGTGAATCAAATTTATCCTGAAAGTCTTAGAAA
TC
Found at i:7228844 original size:374 final size:375
Alignment explanation
Indices: 7228135--7228872 Score: 1043
Period size: 374 Copynumber: 2.0 Consensus size: 375
7228125 CCTAGAAGTT
* *
7228135 TTACAAAATCGACTGAGATAACACCACAAGTCGAAAGATAAAGAATCGATCAAAATAATACCGTG
1 TTACAAAATCGACTGAGATAACACCACAAGTCAAAAGATAAAGAATCGATCAAAATAACACCGTG
* * * * * *
7228200 AATTAAATTTATGCCTGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAATCATGCCTAAAG
66 AATCAAATTTATGCCTGAAGATCTTAGAAATCATACCCGAAGGTCTTACAGAATCATGCCCAAAG
* * *
7228265 GTCTTACAGAATCGACTAGATAACACCACAAGTCAAAATATAAAGAATTGATCGAGATAACACCG
131 GTCTTACAGAATCAACTAGATAACACCACAAGTCAAAAGATAAAGAATCGATCGAGATAACACCG
* * * * *
7228330 CGAATCAAATTTATGCCTGGAGGTCTTAGAAATCATGCCCAGAGGTCTTACAAAATCATTCCCGG
196 CGAATCAAATTTATACCTGAAAGTCTTAGAAATCATGCCCAGAGGTCTTACAAAATCATGCCCGA
* *
7228395 AGGTCTTATAGAATTGATTAAGATAACACCACAAGTCAAAAGATAAAAAATCGATCGGGATAACA
261 AGGTCTTATAGAATCGATTAAGATAACACCACAAGTCAAAAGATAAAAAATCGATCGAGATAACA
* * *
7228460 CCGCGAATCGAATTTATGCTCGGAGGTCTTAGAAATCATAACCGAAGGTC
326 CCGCGAATCGAATTTATGCCCGAAGGTCATAGAAATCATAACCGAAGGTC
* * * ***
7228510 TTACAAAATCGACTG-GATAACATCACAAGTTAAAAGATAAATAATCGATCGGGATAACACCGTG
1 TTACAAAATCGACTGAGATAACACCACAAGTCAAAAGATAAAGAATCGATCAAAATAACACCGTG
* * * **
7228574 AATCAAATTTATG-CTCGAAGATCTTAGAAATCATACCCGGAGGTCTTATAGAATTATGCCCGGA
66 AATCAAATTTATGCCT-GAAGATCTTAGAAATCATACCCGAAGGTCTTACAGAATCATGCCCAAA
* *
7228638 GGTCTTACAGAATCAACTAGGATAACACCA-AAGTCAAAAGATAAAGAATCGATCGGGATAACAT
130 GGTCTTACAGAATCAACTA-GATAACACCACAAGTCAAAAGATAAAGAATCGATCGAGATAACAC
* * * *
7228702 CGCGAATCAAATTTATACCTGAAAGTCTTAGAAATCATGCTCGGAGGTTTTA-AAGAATCGTGCC
194 CGCGAATCAAATTTATACCTGAAAGTCTTAGAAATCATGCCCAGAGGTCTTACAA-AATCATGCC
* **
7228766 CGAAGGTCTTATAGACTCGATTGGGATAACACCACAAGTCAAAAGATAAAAAATCGATCGAGATA
258 CGAAGGTCTTATAGAATCGATTAAGATAACACCACAAGTCAAAAGATAAAAAATCGATCGAGATA
*
7228831 ACACCGTGAATCGAATTTATGCCCGAAGGTCATAGAAATCAT
323 ACACCGCGAATCGAATTTATGCCCGAAGGTCATAGAAATCAT
7228873 GCTCAGATAC
Statistics
Matches: 318, Mismatches: 42, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
373 4 0.01
374 289 0.91
375 25 0.08
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (375 bp):
TTACAAAATCGACTGAGATAACACCACAAGTCAAAAGATAAAGAATCGATCAAAATAACACCGTG
AATCAAATTTATGCCTGAAGATCTTAGAAATCATACCCGAAGGTCTTACAGAATCATGCCCAAAG
GTCTTACAGAATCAACTAGATAACACCACAAGTCAAAAGATAAAGAATCGATCGAGATAACACCG
CGAATCAAATTTATACCTGAAAGTCTTAGAAATCATGCCCAGAGGTCTTACAAAATCATGCCCGA
AGGTCTTATAGAATCGATTAAGATAACACCACAAGTCAAAAGATAAAAAATCGATCGAGATAACA
CCGCGAATCGAATTTATGCCCGAAGGTCATAGAAATCATAACCGAAGGTC
Found at i:7229287 original size:41 final size:41
Alignment explanation
Indices: 7229242--7229347 Score: 144
Period size: 41 Copynumber: 2.6 Consensus size: 41
7229232 TTTTTGATGA
*
7229242 AGGTTCC-CTCTAAACAGAGGTTTTGAAATCTTGATTGAAAT
1 AGGTTCCTCT-TAAACAGAGGCTTTGAAATCTTGATTGAAAT
7229283 AGGTTCCTCTTAAACAGAGGCTTTGAAATCTTGATTGAGAA-
1 AGGTTCCTCTTAAACAGAGGCTTTGAAATCTTGATTGA-AAT
* * *
7229324 CGGTTCTTCTTAAACAGAGACTTT
1 AGGTTCCTCTTAAACAGAGGCTTT
7229348 AAAACTTTAA
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
41 55 0.93
42 4 0.07
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (41 bp):
AGGTTCCTCTTAAACAGAGGCTTTGAAATCTTGATTGAAAT
Found at i:7230646 original size:19 final size:20
Alignment explanation
Indices: 7230622--7230664 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7230612 CATATTTCTC
7230622 TTTTTT-ATTT-CTTTTTTAT
1 TTTTTTGATTTGCTTTTTT-T
*
7230641 TTTTTTGATTTGGTTTTTTT
1 TTTTTTGATTTGCTTTTTTT
7230661 TTTT
1 TTTT
7230665 AATTCTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
20 9 0.43
21 6 0.29
ACGTcount: A:0.07, C:0.02, G:0.07, T:0.84
Consensus pattern (20 bp):
TTTTTTGATTTGCTTTTTTT
Found at i:7235974 original size:15 final size:17
Alignment explanation
Indices: 7235943--7235977 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7235933 TAATGCACAC
7235943 AATAAAAAAATATATAA
1 AATAAAAAAATATATAA
7235960 AATAAAAAAA-A-ATAA
1 AATAAAAAAATATATAA
7235975 AAT
1 AAT
7235978 GACTCGAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 1 0.06
17 10 0.56
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (17 bp):
AATAAAAAAATATATAA
Found at i:7239002 original size:11 final size:11
Alignment explanation
Indices: 7238986--7239017 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
7238976 AGGGGATATG
7238986 GGTGGCTGTAA
1 GGTGGCTGTAA
7238997 GGTGGCTGTAA
1 GGTGGCTGTAA
7239008 GGTGGCTGTA
1 GGTGGCTGTA
7239018 GGCTGGTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.16, C:0.09, G:0.47, T:0.28
Consensus pattern (11 bp):
GGTGGCTGTAA
Found at i:7239128 original size:9 final size:8
Alignment explanation
Indices: 7239102--7239138 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
7239092 GCCACCTTAC
7239102 TTTTTGTT
1 TTTTTGTT
* *
7239110 TTTCTCTT
1 TTTTTGTT
7239118 TTTTTGTT
1 TTTTTGTT
7239126 TTTTTGTT
1 TTTTTGTT
7239134 TTTTT
1 TTTTT
7239139 ATATTTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.00, C:0.05, G:0.08, T:0.86
Consensus pattern (8 bp):
TTTTTGTT
Found at i:7239187 original size:22 final size:24
Alignment explanation
Indices: 7239140--7239208 Score: 76
Period size: 22 Copynumber: 3.1 Consensus size: 24
7239130 TGTTTTTTTA
7239140 TATTTTTATATAATTAATAATTAT
1 TATTTTTATATAATTAATAATTAT
* *
7239164 TATTTTTTTA-AATTAGT-ATTAT
1 TATTTTTATATAATTAATAATTAT
*
7239186 TATTATTAT-T-ATTAA-AATTAT
1 TATTTTTATATAATTAATAATTAT
7239207 TA
1 TA
7239209 ATATTATACT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
21 11 0.29
22 12 0.32
23 6 0.16
24 9 0.24
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (24 bp):
TATTTTTATATAATTAATAATTAT
Found at i:7239192 original size:9 final size:9
Alignment explanation
Indices: 7239147--7239215 Score: 52
Period size: 9 Copynumber: 7.8 Consensus size: 9
7239137 TTATATTTTT
*
7239147 ATATAATTA
1 ATATTATTA
7239156 ATAATTATT-
1 AT-ATTATTA
* *
7239165 ATTTTTTTA
1 ATATTATTA
*
7239174 A-ATTAGTA
1 ATATTATTA
*
7239182 TTATTATTA
1 ATATTATTA
*
7239191 TTATTATTA
1 ATATTATTA
*
7239200 AAATTATTA
1 ATATTATTA
7239209 ATATTAT
1 ATATTAT
7239216 ACTAAAATGA
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
8 8 0.17
9 33 0.72
10 5 0.11
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (9 bp):
ATATTATTA
Found at i:7239519 original size:31 final size:32
Alignment explanation
Indices: 7239484--7239545 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
7239474 GTCTTTTTGT
*
7239484 TGATTATTC-ATTTATTTTTTTTG-TTTATCTC
1 TGATTATTCAATTT-TTTTATTTGATTTATCTC
*
7239515 TGATTTTTCAATTTTTTTATTTGATTTATCT
1 TGATTATTCAATTTTTTTATTTGATTTATCT
7239546 TTTGTTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.18, C:0.08, G:0.06, T:0.68
Consensus pattern (32 bp):
TGATTATTCAATTTTTTTATTTGATTTATCTC
Found at i:7240150 original size:17 final size:17
Alignment explanation
Indices: 7240128--7240166 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7240118 ATTTGATTCT
7240128 AAAGAGAAAATG-AGAAA
1 AAAGAGAAAA-GAAGAAA
*
7240145 AAAGAGAAGAGAAGAAA
1 AAAGAGAAAAGAAGAAA
7240162 AAAGA
1 AAAGA
7240167 AACAGAGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.03
Consensus pattern (17 bp):
AAAGAGAAAAGAAGAAA
Found at i:7240177 original size:16 final size:17
Alignment explanation
Indices: 7240140--7240177 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
7240130 AGAGAAAATG
*
7240140 AGAAAAAAGAGAAGAGA
1 AGAAAAAAGAGAACAGA
7240157 AGAAAAAAGA-AACAGA
1 AGAAAAAAGAGAACAGA
*
7240173 GGAAA
1 AGAAA
7240178 TCTGAAGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.71, C:0.03, G:0.26, T:0.00
Consensus pattern (17 bp):
AGAAAAAAGAGAACAGA
Found at i:7241737 original size:12 final size:13
Alignment explanation
Indices: 7241713--7241742 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
7241703 ATTAAAAAAG
7241713 ATTTTTTAGGAAA
1 ATTTTTTAGGAAA
7241726 ATTTTTTA-GAAA
1 ATTTTTTAGGAAA
7241738 ATTTT
1 ATTTT
7241743 CAAAATTCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (13 bp):
ATTTTTTAGGAAA
Found at i:7242957 original size:44 final size:44
Alignment explanation
Indices: 7242898--7242989 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
7242888 TTTTCAAAAG
* * *
7242898 AAAAAAAATTTTAAA-TAGACCCAAATGGTGAAAAATTTAGAAAT
1 AAAAAAAATTCTAAATTA-ACCAAAATGATGAAAAATTTAGAAAT
*
7242942 AAAAAAAGTTCTAAATTAACCAAAATGATGAAAAATTTAGAAAT
1 AAAAAAAATTCTAAATTAACCAAAATGATGAAAAATTTAGAAAT
7242986 AAAA
1 AAAA
7242990 TTAAAAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 41 0.95
45 2 0.05
ACGTcount: A:0.60, C:0.07, G:0.10, T:0.24
Consensus pattern (44 bp):
AAAAAAAATTCTAAATTAACCAAAATGATGAAAAATTTAGAAAT
Found at i:7243644 original size:43 final size:44
Alignment explanation
Indices: 7243552--7243646 Score: 156
Period size: 44 Copynumber: 2.2 Consensus size: 44
7243542 TTTCAAAAGA
* *
7243552 AAAAAAAATTTTAAATAGACCCAAATGGTGAAAAATTTAGAAAT
1 AAAAAAAATTCTAAATAGACCCAAATGATGAAAAATTTAGAAAT
7243596 AAAAAAAATTCTAAATTA-ACCCAAATGATGAAAAATTTAGAAAT
1 AAAAAAAATTCTAAA-TAGACCCAAATGATGAAAAATTTAGAAAT
7243640 AAAAAAA
1 AAAAAAA
7243647 TAAAAATAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 46 0.96
45 2 0.04
ACGTcount: A:0.61, C:0.07, G:0.08, T:0.23
Consensus pattern (44 bp):
AAAAAAAATTCTAAATAGACCCAAATGATGAAAAATTTAGAAAT
Found at i:7244940 original size:2 final size:2
Alignment explanation
Indices: 7244933--7244957 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7244923 AAAGGGAGTG
7244933 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7244958 TTGTGTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7246280 original size:2 final size:2
Alignment explanation
Indices: 7246273--7246297 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7246263 AAGAAATAAG
7246273 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7246298 GGTTTAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7247401 original size:10 final size:10
Alignment explanation
Indices: 7247386--7247447 Score: 54
Period size: 10 Copynumber: 6.0 Consensus size: 10
7247376 ATAGTTATTT
7247386 TATATTTAAA
1 TATATTTAAA
7247396 TATATTTAAA
1 TATATTTAAA
*
7247406 TATATTAAAAA
1 TATATT-TAAA
*
7247417 TCATATTAAAA
1 T-ATATTTAAA
*
7247428 TAATATATAAA
1 T-ATATTTAAA
*
7247439 -AAATTTAAA
1 TATATTTAAA
7247448 AATCAATAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
9 7 0.16
10 16 0.36
11 16 0.36
12 5 0.11
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (10 bp):
TATATTTAAA
Found at i:7247428 original size:22 final size:23
Alignment explanation
Indices: 7247393--7247448 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
7247383 TTTTATATTT
*
7247393 AAATATATTTAAAT-ATAT-TAA
1 AAATATATTAAAATAATATATAA
7247414 AAATCATATTAAAATAATATATAA
1 AAAT-ATATTAAAATAATATATAA
7247438 AAA-AT-TTAAAA
1 AAATATATTAAAA
7247449 ATCAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 10 0.32
22 11 0.35
23 4 0.13
24 6 0.19
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
AAATATATTAAAATAATATATAA
Found at i:7248914 original size:31 final size:32
Alignment explanation
Indices: 7248879--7248940 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
7248869 GTCTTTTTGT
*
7248879 TGATTATTC-ATTTATTTTTTTTG-TTTATCTC
1 TGATTATTCAATTT-TTTTATTTGATTTATCTC
*
7248910 TGATTTTTCAATTTTTTTATTTGATTTATCT
1 TGATTATTCAATTTTTTTATTTGATTTATCT
7248941 TTTGTTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.18, C:0.08, G:0.06, T:0.68
Consensus pattern (32 bp):
TGATTATTCAATTTTTTTATTTGATTTATCTC
Found at i:7251647 original size:21 final size:21
Alignment explanation
Indices: 7251623--7251663 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7251613 GATTTTTGGT
7251623 TATTTATTTATTT-AGTTATTA
1 TATTTATTT-TTTAAGTTATTA
7251644 TATTTATTTTTTAAGTTATT
1 TATTTATTTTTTAAGTTATT
7251664 GCATGATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (21 bp):
TATTTATTTTTTAAGTTATTA
Found at i:7252337 original size:44 final size:44
Alignment explanation
Indices: 7252278--7252370 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
7252268 TTTTCAAAAG
* * * *
7252278 AAAAAAAATTTTAAA-TAGGCCCAAATGGTGAAAAATTTAGAAAT
1 AAAAAAAATTCTAAATTA-ACCCAAACGATGAAAAATTTAGAAAT
7252322 AAAAAAAATTCTAAATTAACCCAAACGATGAAAAATTTAGAAAT
1 AAAAAAAATTCTAAATTAACCCAAACGATGAAAAATTTAGAAAT
7252366 AAAAA
1 AAAAA
7252371 TAAAAATAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 42 0.95
45 2 0.05
ACGTcount: A:0.59, C:0.09, G:0.10, T:0.23
Consensus pattern (44 bp):
AAAAAAAATTCTAAATTAACCCAAACGATGAAAAATTTAGAAAT
Found at i:7252381 original size:44 final size:44
Alignment explanation
Indices: 7252297--7252382 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
7252287 TTTAAATAGG
* * **
7252297 CCCAAATGGTGAAAAATTTAGAAATAAAAAAAATTCTAAATTAA
1 CCCAAACGATGAAAAATTTAGAAATAAAAAAAATAATAAATTAA
7252341 CCCAAACGATGAAAAATTTAGAAATAAAAATAAA-AATAAATT
1 CCCAAACGATGAAAAATTTAGAAATAAAAA-AAATAATAAATT
7252383 TTGATGGTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 34 0.92
45 3 0.08
ACGTcount: A:0.59, C:0.09, G:0.08, T:0.23
Consensus pattern (44 bp):
CCCAAACGATGAAAAATTTAGAAATAAAAAAAATAATAAATTAA
Found at i:7252978 original size:650 final size:651
Alignment explanation
Indices: 7252147--7253455 Score: 2365
Period size: 657 Copynumber: 2.0 Consensus size: 651
7252137 GATGAGATGC
*
7252147 TTGAAAATTTCAAATGGTAAATCCTCTAAAAATCTCTAGGTGAAAAATTTCTTTAAATTTATTAC
1 TTGAAAATTTCAAATGGTAAATCCTCTAAAAATCTCTAGGTGAAAAATTTCTTTAAATTTATCAC
*
7252212 AAATGGTAGAAGAATTTAAATAAAAGTTCAAAAAAACTTTTTGTCATATTATTTTCTTTTCAAAA
66 AAATGGTAGAAGAATTTAAATAAAAGTTCAAAAAAAC-ATTTGTCATATTATTTTCTTTTCAAAA
*
7252277 GAAAAAAAATTTTAAATAGGCCCAAATGGTGAAAAATTTAGAAATAAAAAAAATTCTAAATTAAC
130 GAAAAAAAATTTTAAATAGACCCAAATGGTGAAAAATTTAGAAATAAAAAAAATTCTAAATTAAC
7252342 CCAAACGATGAAAAATTTAG-AAAT-AAAAATAAAAATAAATTTTGATGGTGAAATTCTTAGTAA
195 CCAAACGATGAAAAATTTAGAAAATAAAAAATAAAAATAAATTTTGATGGTGAAATTCTTAGTAA
* *
7252405 TTGCAAATGGTTGATTATCTAAGATATTTTTATGTAAGAATATATTTCTAATTTTGACCCAAATG
260 TTGCAAATAGTTGATTATCTAAGAAATTTTTATGTAAGAATATATTTCTAATTTTGACCCAAATG
7252470 GTAGATGAATTAGATATATTTTCAATAAAAACCAAAATAAACCAAAATTAAATCTTTTTCCAACG
325 GTAGATGAATTAGATATATTTTCAATAAAAACCAAAATAAACCAAAATTAAATCTTTTTCCAACG
7252535 ATGGCGCCTCTTCAATAAAACAAATTGGATTCTTGAATACTCTTGAGGTAAGGACACAATTTTTA
390 ATGGCGCCTCTTCAATAAAACAAATTGGATTCTTGAATACTCTTGAGGTAAGGACACAATTTTTA
7252600 ATAAATCTACCAGATTGATGAAGAATCTTAAAAATTATTTTTAATATTAAAATTTAGACCATTAG
455 ATAAATCTACCAGATTGATGAAGAATCTTAAAAATTATTTTTAATATTAAAATTTAGACCATTAG
*
7252665 CATCAAGATCTTAGGATAATTTAAAATTAAATGGTACCATCTTAGGATTGGTGTTATATGGGTGC
520 CATCAAGATCTTAGGATAATTTAAAATTAAATGGTACCATCTTAGGATTGGTGTTATAGGGGTGC
* * *
7252730 TATAACCTTTCTTACATGTAATTGAACTCCCAAACCTAGTTATGTTCATAAGGTCAGAACCTATT
585 TATAACCTTTCCTACATGTAATTAAACTCCCAAACCTAGTTATGTTCAGAAGGTCAGAACCTATT
7252795 CT
650 CT
* * *
7252797 TTGAAAATTTCAAATGGTATATCCTCTAAAAATCTCTAGGTGAAAATTTTCTTTAAATTTATCAT
1 TTGAAAATTTCAAATGGTAAATCCTCTAAAAATCTCTAGGTGAAAAATTTCTTTAAATTTATCAC
7252862 AAATGGTAGAAGAATTTAAATAAAAGTTCAAAAAAA-ATTTGTCATATTATTTTCTTTTCAAAAG
66 AAATGGTAGAAGAATTTAAATAAAAGTTCAAAAAAACATTTGTCATATTATTTTCTTTTCAAAAG
7252926 AAAAAAAAATTTTAAATAGACCCAAATGGTGAAAAATTTTA-AAATAAAAAAAATTCTAAATTAA
131 -AAAAAAAATTTTAAATAGACCCAAATGGTGAAAAA-TTTAGAAATAAAAAAAATTCTAAATTAA
*
7252990 CCCAAATGATGAAAAATTTAGAAATAAAAATAAAAAAATAAAAATAAATTTTGATGGTGAAATTC
194 CCCAAACGATGAAAAATTTAG-----AAAAT-AAAAAATAAAAATAAATTTTGATGGTGAAATTC
7253055 TTAGTAATTGCAAATAGTTGATTATCTAAGAAATTTTTATGTAAGAATATATTTCTAATTTTGAC
253 TTAGTAATTGCAAATAGTTGATTATCTAAGAAATTTTTATGTAAGAATATATTTCTAATTTTGAC
7253120 CCAAATGGTAGATGAATTAGATATATTTTCAATAAAAACCAAAATAAACCAAAATTAAATCTTTT
318 CCAAATGGTAGATGAATTAGATATATTTTCAATAAAAACCAAAATAAACCAAAATTAAATCTTTT
*
7253185 TCCAATGATGGCGCCTCTTCAATAAAACAAATTGGATTCTTGAATACTCTTGAGGTAAGGACACA
383 TCCAACGATGGCGCCTCTTCAATAAAACAAATTGGATTCTTGAATACTCTTGAGGTAAGGACACA
7253250 ATTTTTAATAAATCTACCAGATTGATGAAGAATCTTAAAAATTATTTTTAATATTAAAATTTAGA
448 ATTTTTAATAAATCTACCAGATTGATGAAGAATCTTAAAAATTATTTTTAATATTAAAATTTAGA
*
7253315 CCATTAGCATCAAGATCTTAGGATAATTTAAAATTAAATGGTACCATCTTAGGATTGGTGTTGTA
513 CCATTAGCATCAAGATCTTAGGATAATTTAAAATTAAATGGTACCATCTTAGGATTGGTGTTATA
*
7253380 GGGGTGCTATAACCTTTCCTACATGTAATTAAACTCTCAAACCTAGTTATGTTCAGAAGGTCAGA
578 GGGGTGCTATAACCTTTCCTACATGTAATTAAACTCCCAAACCTAGTTATGTTCAGAAGGTCAGA
7253445 ACCTATTCT
643 ACCTATTCT
7253454 TT
1 TT
7253456 TAGGGACTCT
Statistics
Matches: 633, Mismatches: 16, Indels: 13
0.96 0.02 0.02
Matches are distributed among these distances:
648 27 0.04
649 77 0.12
650 101 0.16
655 4 0.01
657 424 0.67
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.34
Consensus pattern (651 bp):
TTGAAAATTTCAAATGGTAAATCCTCTAAAAATCTCTAGGTGAAAAATTTCTTTAAATTTATCAC
AAATGGTAGAAGAATTTAAATAAAAGTTCAAAAAAACATTTGTCATATTATTTTCTTTTCAAAAG
AAAAAAAATTTTAAATAGACCCAAATGGTGAAAAATTTAGAAATAAAAAAAATTCTAAATTAACC
CAAACGATGAAAAATTTAGAAAATAAAAAATAAAAATAAATTTTGATGGTGAAATTCTTAGTAAT
TGCAAATAGTTGATTATCTAAGAAATTTTTATGTAAGAATATATTTCTAATTTTGACCCAAATGG
TAGATGAATTAGATATATTTTCAATAAAAACCAAAATAAACCAAAATTAAATCTTTTTCCAACGA
TGGCGCCTCTTCAATAAAACAAATTGGATTCTTGAATACTCTTGAGGTAAGGACACAATTTTTAA
TAAATCTACCAGATTGATGAAGAATCTTAAAAATTATTTTTAATATTAAAATTTAGACCATTAGC
ATCAAGATCTTAGGATAATTTAAAATTAAATGGTACCATCTTAGGATTGGTGTTATAGGGGTGCT
ATAACCTTTCCTACATGTAATTAAACTCCCAAACCTAGTTATGTTCAGAAGGTCAGAACCTATTC
T
Found at i:7252993 original size:44 final size:44
Alignment explanation
Indices: 7252927--7253019 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 44
7252917 TTTCAAAAGA
* *
7252927 AAAAAAAATTTTAAATAGACCCAAATGGTGAAAAATTTTA-AAAT
1 AAAAAAAATTCTAAATAGACCCAAATGATGAAAAA-TTTAGAAAT
7252971 AAAAAAAATTCTAAATTA-ACCCAAATGATGAAAAATTTAGAAAT
1 AAAAAAAATTCTAAA-TAGACCCAAATGATGAAAAATTTAGAAAT
7253015 AAAAA
1 AAAAA
7253020 TAAAAAAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 4 0.09
44 39 0.87
45 2 0.04
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.25
Consensus pattern (44 bp):
AAAAAAAATTCTAAATAGACCCAAATGATGAAAAATTTAGAAAT
Found at i:7253020 original size:14 final size:14
Alignment explanation
Indices: 7253011--7253037 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7253001 AAAAATTTAG
7253011 AAATAAAAATAAAA
1 AAATAAAAATAAAA
7253025 AAATAAAAATAAA
1 AAATAAAAATAAA
7253038 TTTTGATGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (14 bp):
AAATAAAAATAAAA
Found at i:7260320 original size:15 final size:15
Alignment explanation
Indices: 7260296--7260333 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
7260286 GCCCAATTGC
*
7260296 TCATTCTTTTATTTT
1 TCATTTTTTTATTTT
7260311 TCATTTTTTTATTTT
1 TCATTTTTTTATTTT
*
7260326 TTATTTTT
1 TCATTTTT
7260334 GACTTTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (15 bp):
TCATTTTTTTATTTT
Found at i:7260340 original size:20 final size:19
Alignment explanation
Indices: 7260317--7260374 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 19
7260307 TTTTTCATTT
7260317 TTTTATTTTTTATTTTTGAC
1 TTTTATTTTTT-TTTTTGAC
* *
7260337 TTTTATTTGTTTTTGTTGAT
1 TTTTATTT-TTTTTTTTGAC
7260357 TTATCTATTTTTTTTTTT
1 TT-T-TATTTTTTTTTTT
7260375 AGTTTTTAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
20 16 0.50
21 11 0.34
22 5 0.16
ACGTcount: A:0.12, C:0.03, G:0.07, T:0.78
Consensus pattern (19 bp):
TTTTATTTTTTTTTTTGAC
Found at i:7260349 original size:22 final size:22
Alignment explanation
Indices: 7260302--7260349 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
7260292 TTGCTCATTC
* *
7260302 TTTTATTTTTCATTTTTTTATT
1 TTTTATTTTTCATTTTATTATG
*
7260324 TTTTATTTTTGACTTTTATT-TG
1 TTTTATTTTTCA-TTTTATTATG
7260346 TTTT
1 TTTT
7260350 TGTTGATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.12, C:0.04, G:0.04, T:0.79
Consensus pattern (22 bp):
TTTTATTTTTCATTTTATTATG
Found at i:7261269 original size:23 final size:21
Alignment explanation
Indices: 7261234--7261312 Score: 70
Period size: 26 Copynumber: 3.4 Consensus size: 21
7261224 GCAGAGTTAT
*
7261234 TTTTTTTAT-TTTTCTTTGGTA
1 TTTTTTTATATTTT-TTTAGTA
7261255 TTTTTTTAGTATTTTTTTAGTA
1 TTTTTTTA-TATTTTTTTAGTA
7261277 TTTTTCTTAATATTATTTTTCTTAGTA
1 -TTTT-TT--TA-TATTTTT-TTAGTA
7261304 TTTTTTTAT
1 TTTTTTTAT
7261313 TACATTTAGA
Statistics
Matches: 49, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
21 8 0.16
22 8 0.16
23 10 0.20
24 2 0.04
25 2 0.04
26 13 0.27
27 6 0.12
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.73
Consensus pattern (21 bp):
TTTTTTTATATTTTTTTAGTA
Found at i:7261271 original size:10 final size:11
Alignment explanation
Indices: 7261234--7261311 Score: 70
Period size: 11 Copynumber: 6.7 Consensus size: 11
7261224 GCAGAGTTAT
7261234 TTTTTTTA-T-
1 TTTTTTTAGTA
*
7261243 TTTTCTTTGGTA
1 TTTT-TTTAGTA
7261255 TTTTTTTAGTA
1 TTTTTTTAGTA
7261266 TTTTTTTAGTA
1 TTTTTTTAGTA
*
7261277 TTTTTCTTAATATTA
1 -TTTT-TT--TAGTA
7261292 TTTTTCTTAGTA
1 TTTTT-TTAGTA
7261304 TTTTTTTA
1 TTTTTTTA
7261312 TTACATTTAG
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
9 4 0.07
10 3 0.05
11 21 0.37
12 17 0.30
13 3 0.05
14 5 0.09
15 4 0.07
ACGTcount: A:0.17, C:0.04, G:0.06, T:0.73
Consensus pattern (11 bp):
TTTTTTTAGTA
Found at i:7261279 original size:35 final size:36
Alignment explanation
Indices: 7261231--7261312 Score: 107
Period size: 38 Copynumber: 2.3 Consensus size: 36
7261221 CCAGCAGAGT
*
7261231 TATTTTTTT-TATTTTTCTT-TGGTATTTTT-TTAG
1 TATTTTTTTATATTTTTCTTATAGTATTTTTCTTAG
*
7261264 TATTTTTTTAGTATTTTTCTTAATATTATTTTTCTTAG
1 TATTTTTTTA-TATTTTTCTT-ATAGTATTTTTCTTAG
7261302 TATTTTTTTAT
1 TATTTTTTTAT
7261313 TACATTTAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 9 0.21
35 10 0.24
37 9 0.21
38 14 0.33
ACGTcount: A:0.17, C:0.04, G:0.06, T:0.73
Consensus pattern (36 bp):
TATTTTTTTATATTTTTCTTATAGTATTTTTCTTAG
Found at i:7261295 original size:15 final size:15
Alignment explanation
Indices: 7261275--7261310 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
7261265 ATTTTTTTAG
7261275 TATTTTTCTTAATAT
1 TATTTTTCTTAATAT
*
7261290 TATTTTTCTTAGTAT
1 TATTTTTCTTAATAT
7261305 T-TTTTT
1 TATTTTT
7261311 ATTACATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.19, C:0.06, G:0.03, T:0.72
Consensus pattern (15 bp):
TATTTTTCTTAATAT
Found at i:7261546 original size:16 final size:17
Alignment explanation
Indices: 7261525--7261565 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
7261515 TTAGAAAAGA
*
7261525 ATAAAAAATAT-AAAAT
1 ATAAAAAACATAAAAAT
7261541 ATAAAAAAACATAAAAAT
1 AT-AAAAAACATAAAAAT
7261559 ATAAAAA
1 ATAAAAA
7261566 TTTTGGAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 13 0.59
18 7 0.32
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (17 bp):
ATAAAAAACATAAAAAT
Found at i:7261557 original size:18 final size:18
Alignment explanation
Indices: 7261527--7261565 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7261517 AGAAAAGAAT
7261527 AAAAAATATAAAATATAA
1 AAAAAATATAAAATATAA
7261545 AAAAACATA-AAAATATAA
1 AAAAA-ATATAAAATATAA
7261563 AAA
1 AAA
7261566 TTTTGGAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAAAATATAAAATATAA
Found at i:7266116 original size:8 final size:8
Alignment explanation
Indices: 7266105--7266156 Score: 52
Period size: 8 Copynumber: 6.4 Consensus size: 8
7266095 GAATGGAAGA
7266105 AAAAAATG
1 AAAAAATG
7266113 AAAAAATG
1 AAAAAATG
7266121 AAAAAAATG
1 -AAAAAATG
*
7266130 -AAAAGTG
1 AAAAAATG
*
7266137 GAAAAATAG
1 AAAAAAT-G
*
7266146 AAAAGATG
1 AAAAAATG
7266154 AAA
1 AAA
7266157 GGAGAAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
7 6 0.16
8 17 0.46
9 14 0.38
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (8 bp):
AAAAAATG
Found at i:7266117 original size:9 final size:9
Alignment explanation
Indices: 7266103--7266133 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
7266093 AAGAATGGAA
7266103 GAAAAAAAT
1 GAAAAAAAT
7266112 G-AAAAAAT
1 GAAAAAAAT
7266120 GAAAAAAAT
1 GAAAAAAAT
7266129 GAAAA
1 GAAAA
7266134 GTGGAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (9 bp):
GAAAAAAAT
Found at i:7266126 original size:16 final size:16
Alignment explanation
Indices: 7266105--7266156 Score: 52
Period size: 17 Copynumber: 3.2 Consensus size: 16
7266095 GAATGGAAGA
7266105 AAAAAATGAAAAAATG
1 AAAAAATGAAAAAATG
*
7266121 AAAAAAATG-AAAAGTG
1 -AAAAAATGAAAAAATG
* *
7266137 GAAAAATAGAAAAGATG
1 AAAAAAT-GAAAAAATG
7266154 AAA
1 AAA
7266157 GGAGAAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 6 0.21
16 7 0.25
17 15 0.54
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (16 bp):
AAAAAATGAAAAAATG
Found at i:7266165 original size:24 final size:24
Alignment explanation
Indices: 7266112--7266166 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
7266102 AGAAAAAAAT
*
7266112 GAAAAAATGAAAAAAATGAAAAGT
1 GAAAAAATGAAAAAAATGAAAAGA
* * *
7266136 GGAAAAAT-AGAAAAGATGAAAGGA
1 GAAAAAATGA-AAAAAATGAAAAGA
7266160 GAAAAAA
1 GAAAAAA
7266167 GGAAGACTCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.69, C:0.00, G:0.22, T:0.09
Consensus pattern (24 bp):
GAAAAAATGAAAAAAATGAAAAGA
Found at i:7266941 original size:23 final size:23
Alignment explanation
Indices: 7266915--7266958 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7266905 AAAGCCTATG
*
7266915 AATGGTGATCAAG-TGATGAAAAT
1 AATGATGATC-AGTTGATGAAAAT
7266938 AATGATGATCAGTTGATGAAA
1 AATGATGATCAGTTGATGAAA
7266959 CTTGTTCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.43, C:0.05, G:0.25, T:0.27
Consensus pattern (23 bp):
AATGATGATCAGTTGATGAAAAT
Found at i:7267302 original size:21 final size:21
Alignment explanation
Indices: 7267260--7267399 Score: 149
Period size: 21 Copynumber: 6.7 Consensus size: 21
7267250 AAATCTTTTT
* *
7267260 ATGAGAATTTTTGAGTTCTCAA
1 ATGAGAATCTTTGA-ATCTCAA
*
7267282 ATGAAAATCTTTGAATCTCAA
1 ATGAGAATCTTTGAATCTCAA
*
7267303 ATGAGAATCTTTGAATTTCAA
1 ATGAGAATCTTTGAATCTCAA
* * *
7267324 ATGAAAATCTTTGAATTTCGA
1 ATGAGAATCTTTGAATCTCAA
* *
7267345 ATGTGAATCTTCGAA-CTCAA
1 ATGAGAATCTTTGAATCTCAA
* *
7267365 ATGAGAATCCTT-AAGTTTCAA
1 ATGAGAATCTTTGAA-TCTCAA
7267386 ATGAGAATCTTTGA
1 ATGAGAATCTTTGA
7267400 GGTGTGAAAC
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
19 2 0.02
20 12 0.12
21 71 0.72
22 13 0.13
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (21 bp):
ATGAGAATCTTTGAATCTCAA
Found at i:7267332 original size:42 final size:42
Alignment explanation
Indices: 7267260--7267399 Score: 167
Period size: 42 Copynumber: 3.3 Consensus size: 42
7267250 AAATCTTTTT
* * *
7267260 ATGAGAATTTTTGAGTTCTCAAATGAAAATCTTTGAATCTCAA
1 ATGAGAATCTTTGAATT-TCAAATGAAAATCTTTGAATTTCAA
*
7267303 ATGAGAATCTTTGAATTTCAAATGAAAATCTTTGAATTTCGA
1 ATGAGAATCTTTGAATTTCAAATGAAAATCTTTGAATTTCAA
* * * * *
7267345 ATGTGAATCTTCGAA-CTCAAATGAGAATCCTT-AAGTTTCAA
1 ATGAGAATCTTTGAATTTCAAATGAAAATCTTTGAA-TTTCAA
7267386 ATGAGAATCTTTGA
1 ATGAGAATCTTTGA
7267400 GGTGTGAAAC
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
40 2 0.02
41 31 0.37
42 36 0.43
43 15 0.18
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (42 bp):
ATGAGAATCTTTGAATTTCAAATGAAAATCTTTGAATTTCAA
Found at i:7267444 original size:79 final size:79
Alignment explanation
Indices: 7267344--7267490 Score: 240
Period size: 79 Copynumber: 1.9 Consensus size: 79
7267334 TTGAATTTCG
* * *
7267344 AATGTGAATCTTCGAACTCAAATGAGAATCCTTAAGTTTCAAATGAGAATCTTTGAGGTGTGAAA
1 AATGTGAATCTTCGAACTCAAATGAGAATCCTTAAGTTTCAAATAAGAATATTTAAGGTGTGAAA
7267409 CCCAAAATTTGTCA
66 CCCAAAATTTGTCA
* * *
7267423 AATGTGAATCTTCGAACTCAAATGAGAATCTTTGAGTTTCAAATAAGGATATTTAAGGTGTGAAA
1 AATGTGAATCTTCGAACTCAAATGAGAATCCTTAAGTTTCAAATAAGAATATTTAAGGTGTGAAA
7267488 CCC
66 CCC
7267491 TAATGTTCGT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 62 1.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (79 bp):
AATGTGAATCTTCGAACTCAAATGAGAATCCTTAAGTTTCAAATAAGAATATTTAAGGTGTGAAA
CCCAAAATTTGTCA
Found at i:7267564 original size:30 final size:30
Alignment explanation
Indices: 7267528--7267584 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7267518 ACTAGAATGA
7267528 AAAGTTTTGAAC-TTTTGGACGTGAATCTTC
1 AAAG-TTTGAACTTTTTGGACGTGAATCTTC
*
7267558 AAAGTTTGAACTTTTTGGATGTGAATC
1 AAAGTTTGAACTTTTTGGACGTGAATC
7267585 CTAAACGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (30 bp):
AAAGTTTGAACTTTTTGGACGTGAATCTTC
Found at i:7268013 original size:42 final size:42
Alignment explanation
Indices: 7267894--7268235 Score: 388
Period size: 42 Copynumber: 8.1 Consensus size: 42
7267884 AATTGTCAAT
* *
7267894 GAGCCTTTTATTTTTCAAAGTTGTGGTTGCCTCTATTTAGAA-
1 GAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTA-AAG
* *
7267936 GAGCATTTTATTTTTCCTAAAGTTGTAGTTGCCTCTGTTTAAAG
1 GAGCATTTTA-TTTTCC-AAAGTTGTGGTTGCCTCTATTTAAAG
*
7267980 GAGTATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAAAG
1 GAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAAAG
*
7268022 GAGCATTTTATTTTTCAAAGTTGTGGTTGCCTCTATTTAAA-
1 GAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAAAG
* * * * *
7268063 GAGCATTTTATTTTTCTTAAAGTTGTAGTTACCTCTGTTTAGAG
1 GAGCATTTTA-TTTTC-CAAAGTTGTGGTTGCCTCTATTTAAAG
* * * *
7268107 GAGCATTTTATTTTTCAAAGTTATGGTTACCTCTATTTAGAG
1 GAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAAAG
* * * *
7268149 GAGCAATTTATTTTCCAAAGTTGTGG-TGCCCCTGTTT-AGG
1 GAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAAAG
* * *
7268189 GAAGCAATTTATTTTTCCAAAGTTATGG-TGCCTCTATTTAGAG
1 G-AGCATTTTA-TTTTCCAAAGTTGTGGTTGCCTCTATTTAAAG
7268232 GAGC
1 GAGC
7268236 TTTGTTTAAA
Statistics
Matches: 258, Mismatches: 33, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
40 2 0.01
41 27 0.10
42 149 0.58
43 40 0.16
44 40 0.16
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.44
Consensus pattern (42 bp):
GAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAAAG
Found at i:7268120 original size:85 final size:84
Alignment explanation
Indices: 7267894--7268228 Score: 410
Period size: 85 Copynumber: 4.0 Consensus size: 84
7267884 AATTGTCAAT
* * *
7267894 GAGCCTTTTATTTTTCAAAGTTGTGGTTGCCTCTATTTAGAAGAGCATTTTATTTTTCCTAAAGT
1 GAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAGAGGAGCATTTTATTTTTCC-AAAGT
* * *
7267959 TGTAGTTGCCTCTGTTTAAA
65 TATGGTTGCCTCTATTTAAA
* *
7267979 GGAGTATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAAAGGAGCATTTTATTTTT-CAAAGT
1 -GAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAGAGGAGCATTTTATTTTTCCAAAGT
*
7268043 TGTGGTTGCCTCTATTTAAA
65 TATGGTTGCCTCTATTTAAA
* * * *
7268063 GAGCATTTTATTTTTCTTAAAGTTGTAGTTACCTCTGTTTAGAGGAGCATTTTATTTTT-CAAAG
1 GAGCATTTTA-TTTTC-CAAAGTTGTGGTTGCCTCTATTTAGAGGAGCATTTTATTTTTCCAAAG
* *
7268127 TTATGGTTACCTCTATTTAGAG
64 TTATGGTTGCCTCTATTTA-AA
* * * *
7268149 GAGCAATTTATTTTCCAAAGTTGTGG-TGCCCCTGTTTAG-GGAAGCAATTTATTTTTCCAAAGT
1 GAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAGAGG-AGCATTTTATTTTTCCAAAGT
7268212 TATGG-TGCCTCTATTTA
65 TATGGTTGCCTCTATTTA
7268229 GAGGAGCTTT
Statistics
Matches: 221, Mismatches: 23, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
82 2 0.01
83 44 0.20
84 48 0.22
85 65 0.29
86 62 0.28
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.44
Consensus pattern (84 bp):
GAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAGAGGAGCATTTTATTTTTCCAAAGTT
ATGGTTGCCTCTATTTAAA
Found at i:7268126 original size:127 final size:126
Alignment explanation
Indices: 7267894--7268235 Score: 463
Period size: 127 Copynumber: 2.7 Consensus size: 126
7267884 AATTGTCAAT
*
7267894 GAGCCTTTTATTTTTCAAAGTTGTGGTTGCCTCTATTTAGAAGAGCATTTTATTTTTCCTAAAGT
1 GAGCATTTTATTTTTCAAAGTTGTGGTTGCCTCTATTTA-AAGAGCATTTTATTTTT-CTAAAGT
* * * *
7267959 TGTAGTTGCCTCTGTTTAAAGGAGTATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAAAG
64 TGTAGTTGCCTCTGTTTAGAGGAGCATTTTATTTTCCAAAGTTATGGTTACCTCTATTTAAAG
7268022 GAGCATTTTATTTTTCAAAGTTGTGGTTGCCTCTATTTAAAGAGCATTTTATTTTTCTTAAAGTT
1 GAGCATTTTATTTTTCAAAGTTGTGGTTGCCTCTATTTAAAGAGCATTTTATTTTTC-TAAAGTT
* * *
7268087 GTAGTTACCTCTGTTTAGAGGAGCATTTTATTTTTCAAAGTTATGGTTACCTCTATTTAGAG
65 GTAGTTGCCTCTGTTTAGAGGAGCATTTTATTTTCCAAAGTTATGGTTACCTCTATTTAAAG
* * * * ** * *
7268149 GAGCAATTTATTTTCCAAAGTTGTGG-TGCCCCTGTTTAGGGAAGCAATTTATTTTTCCAAAGTT
1 GAGCATTTTATTTTTCAAAGTTGTGGTTGCCTCTATTTAAAG-AGCATTTTATTTTTCTAAAGTT
* * *
7268213 AT-GGTGCCTCTATTTAGAGGAGC
65 GTAGTTGCCTCTGTTTAGAGGAGC
7268236 TTTGTTTAAA
Statistics
Matches: 192, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
125 18 0.09
126 19 0.10
127 117 0.61
128 38 0.20
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.44
Consensus pattern (126 bp):
GAGCATTTTATTTTTCAAAGTTGTGGTTGCCTCTATTTAAAGAGCATTTTATTTTTCTAAAGTTG
TAGTTGCCTCTGTTTAGAGGAGCATTTTATTTTCCAAAGTTATGGTTACCTCTATTTAAAG
Found at i:7268482 original size:17 final size:18
Alignment explanation
Indices: 7268449--7268482 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7268439 TTGCCCATTC
7268449 TTTTATTTTT-CATTTTT
1 TTTTATTTTTGCATTTTT
*
7268466 TTTTATTTTTGGATTTT
1 TTTTATTTTTGCATTTT
7268483 ATTTGTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.12, C:0.03, G:0.06, T:0.79
Consensus pattern (18 bp):
TTTTATTTTTGCATTTTT
Found at i:7268762 original size:13 final size:13
Alignment explanation
Indices: 7268739--7268773 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
7268729 ACACAGAAGC
7268739 AAATCACAAAAA-
1 AAATCACAAAAAG
*
7268751 ATATCACAAAAAG
1 AAATCACAAAAAG
7268764 AAATCACAAA
1 AAATCACAAA
7268774 CACAAAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.69, C:0.17, G:0.03, T:0.11
Consensus pattern (13 bp):
AAATCACAAAAAG
Found at i:7269447 original size:17 final size:16
Alignment explanation
Indices: 7269427--7269461 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7269417 TTATTTAGTA
7269427 TTTTTCTTAATATTATT
1 TTTTTCTTAATATT-TT
*
7269444 TTTTTCTTAGTATTTT
1 TTTTTCTTAATATTTT
7269460 TT
1 TT
7269462 ATTACATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTTCTTAATATTTT
Found at i:7270914 original size:11 final size:11
Alignment explanation
Indices: 7270898--7270927 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7270888 GGTGTCAATG
7270898 ATATTCTAGTA
1 ATATTCTAGTA
*
7270909 ATATTCTGGTA
1 ATATTCTAGTA
7270920 ATATTCTA
1 ATATTCTA
7270928 AATTGATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.47
Consensus pattern (11 bp):
ATATTCTAGTA
Found at i:7271271 original size:37 final size:37
Alignment explanation
Indices: 7271220--7271294 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
7271210 GTGTGTATTA
7271220 TTGAATTGTGTTGGAACTTTGTTCCTTATTACGAGTG
1 TTGAATTGTGTTGGAACTTTGTTCCTTATTACGAGTG
* * *
7271257 TTGAATTGTTTTGGAACTTTGTTTCTTATTATGAGTG
1 TTGAATTGTGTTGGAACTTTGTTCCTTATTACGAGTG
7271294 T
1 T
7271295 GTATCTCACT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.19, C:0.08, G:0.23, T:0.51
Consensus pattern (37 bp):
TTGAATTGTGTTGGAACTTTGTTCCTTATTACGAGTG
Found at i:7271752 original size:13 final size:13
Alignment explanation
Indices: 7271720--7271759 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
7271710 TTTAATTTTT
7271720 TAAAATTTT-ATA
1 TAAAATTTTAATA
**
7271732 TATTATTTTAATA
1 TAAAATTTTAATA
7271745 TAAAATTTTAATA
1 TAAAATTTTAATA
7271758 TA
1 TA
7271760 TTTTAATACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TAAAATTTTAATA
Found at i:7271765 original size:23 final size:25
Alignment explanation
Indices: 7271720--7271772 Score: 83
Period size: 23 Copynumber: 2.2 Consensus size: 25
7271710 TTTAATTTTT
7271720 TAAAATTTTATATATTATTTTAATA
1 TAAAATTTTATATATTATTTTAATA
7271745 TAAAATTTTA-ATA-TATTTTAATA
1 TAAAATTTTATATATTATTTTAATA
*
7271768 CAAAA
1 TAAAA
7271773 ATATTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 14 0.52
24 3 0.11
25 10 0.37
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
TAAAATTTTATATATTATTTTAATA
Found at i:7271778 original size:26 final size:25
Alignment explanation
Indices: 7271721--7271794 Score: 77
Period size: 25 Copynumber: 3.1 Consensus size: 25
7271711 TTAATTTTTT
*
7271721 AAAATTTTATATATTATTTTAATAT
1 AAAATTTTATATATTATTTTAATAA
7271746 AAAATTTTA-ATA-TATTTTAATACA
1 AAAATTTTATATATTATTTTAATA-A
*
7271770 AAAATATTT-T-TTTTATTTT-ATAA
1 AAAAT-TTTATATATTATTTTAATAA
7271793 AA
1 AA
7271795 TTTTAAAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
23 13 0.30
24 12 0.28
25 18 0.42
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (25 bp):
AAAATTTTATATATTATTTTAATAA
Found at i:7273862 original size:52 final size:52
Alignment explanation
Indices: 7273773--7273871 Score: 128
Period size: 52 Copynumber: 1.9 Consensus size: 52
7273763 AATACAAAAA
* * * *
7273773 TGCCTATTAAAAATTCTTTTCCTCTTAGAATTTTTCTTTTGCAAGTCAAACT
1 TGCCTATTAAAAATCCTTTTCCTCTTAAAATTCTTCTTCTGCAAGTCAAACT
* *
7273825 TGCCTATTAAGAATCCATTTT-CTTTTAAAATTCTTCTTCTGCAAGTC
1 TGCCTATTAAAAATCC-TTTTCCTCTTAAAATTCTTCTTCTGCAAGTC
7273872 TTCTTATCCA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
52 36 0.90
53 4 0.10
ACGTcount: A:0.26, C:0.20, G:0.08, T:0.45
Consensus pattern (52 bp):
TGCCTATTAAAAATCCTTTTCCTCTTAAAATTCTTCTTCTGCAAGTCAAACT
Found at i:7274945 original size:52 final size:52
Alignment explanation
Indices: 7274867--7274970 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
7274857 TATAATAATA
* *
7274867 CAAACTTATCTATTAAGAATCTTTTTTCTCTTAGAATTCTTCTTCTGCAAGT
1 CAAACTTACCTATTAAGAATATTTTTTCTCTTAGAATTCTTCTTCTGCAAGT
*
7274919 CAAACTTACCTATTAAGAATATTTTTTCTTTTAGAATTCTTCTTCTGCAAGT
1 CAAACTTACCTATTAAGAATATTTTTTCTCTTAGAATTCTTCTTCTGCAAGT
7274971 TTTCTTGTCC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.28, C:0.18, G:0.08, T:0.46
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATATTTTTTCTCTTAGAATTCTTCTTCTGCAAGT
Found at i:7278601 original size:3 final size:3
Alignment explanation
Indices: 7278593--7278619 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7278583 TTTTATGAAG
7278593 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
7278620 CTACTACTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7278624 original size:3 final size:3
Alignment explanation
Indices: 7278618--7278645 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7278608 TTATTATTAT
7278618 TAC TAC TAC TAC TAC TAC TAC TAC TAC T
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC T
7278646 TTGAAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TAC
Found at i:7279892 original size:22 final size:22
Alignment explanation
Indices: 7279831--7279913 Score: 73
Period size: 22 Copynumber: 3.9 Consensus size: 22
7279821 AATTTCAAAG
* *
7279831 ATTTGAAATTCAA-AGGTCCTCA
1 ATTTGAAATTCAAGA-GTTCACA
**
7279853 ATTTGAAAACCAAGAGTTCACA
1 ATTTGAAATTCAAGAGTTCACA
* *
7279875 ATTTGAAATTCAAGAGTTTAGA
1 ATTTGAAATTCAAGAGTTCACA
*
7279897 A-TT-AAATTCAAAAGTTC
1 ATTTGAAATTCAAGAGTTC
7279914 GTATTTTGAA
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
20 12 0.24
21 2 0.04
22 35 0.70
23 1 0.02
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.31
Consensus pattern (22 bp):
ATTTGAAATTCAAGAGTTCACA
Found at i:7279954 original size:18 final size:18
Alignment explanation
Indices: 7279928--7279984 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
7279918 TTTGAAATTA
* *
7279928 AAAGATTCATAAGGTTTC
1 AAAGATTCACAAGATTTC
*
7279946 AAAGGTTCACAAGATTTC
1 AAAGATTCACAAGATTTC
* *
7279964 AAA-ATTCGCAAGAATTC
1 AAAGATTCACAAGATTTC
7279981 AAAG
1 AAAG
7279985 GTTTGCAAGG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
17 14 0.44
18 18 0.56
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.26
Consensus pattern (18 bp):
AAAGATTCACAAGATTTC
Found at i:7280068 original size:17 final size:18
Alignment explanation
Indices: 7280046--7280083 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
7280036 GATTCGAAAG
*
7280046 ATTTTCATATTTGCAA-A
1 ATTTTCAAATTTGCAAGA
7280063 ATTTTCAAATTTGCAAGA
1 ATTTTCAAATTTGCAAGA
7280081 ATT
1 ATT
7280084 GAAGTTTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.45
Consensus pattern (18 bp):
ATTTTCAAATTTGCAAGA
Found at i:7280096 original size:17 final size:17
Alignment explanation
Indices: 7280076--7280175 Score: 87
Period size: 17 Copynumber: 5.9 Consensus size: 17
7280066 TTCAAATTTG
*
7280076 CAAGAATTGAAGTTTCA
1 CAAGAATTGAAGATTCA
* *
7280093 CAAGATTTTCAA-ATTCA
1 CAAGA-ATTGAAGATTCA
*
7280110 TAAGAATTGAAGATTCA
1 CAAGAATTGAAGATTCA
* *
7280127 CGAGAATTAAAGATTTC-
1 CAAGAATTGAAGA-TTCA
*
7280144 CAAGAATTGAAAATTCA
1 CAAGAATTGAAGATTCA
* *
7280161 CAAGATTTTAAGATT
1 CAAGAATTGAAGATT
7280176 AGTAAAAAAT
Statistics
Matches: 64, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
16 7 0.11
17 50 0.78
18 7 0.11
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.31
Consensus pattern (17 bp):
CAAGAATTGAAGATTCA
Found at i:7280175 original size:34 final size:34
Alignment explanation
Indices: 7280063--7280169 Score: 119
Period size: 34 Copynumber: 3.1 Consensus size: 34
7280053 TATTTGCAAA
* *
7280063 ATTTTCAAATTTGCAAGAATTGAAGTTTCACAAG
1 ATTTTCAAATTTCCAAGAATTGAAGATTCACAAG
* *
7280097 ATTTTCAAA-TTCATAAGAATTGAAGATTCACGAG
1 ATTTTCAAATTTC-CAAGAATTGAAGATTCACAAG
* * *
7280131 A-ATTAAAGATTTCCAAGAATTGAAAATTCACAAG
1 ATTTTCAA-ATTTCCAAGAATTGAAGATTCACAAG
7280165 ATTTT
1 ATTTT
7280170 AAGATTAGTA
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
33 6 0.10
34 48 0.81
35 5 0.08
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (34 bp):
ATTTTCAAATTTCCAAGAATTGAAGATTCACAAG
Found at i:7280313 original size:21 final size:22
Alignment explanation
Indices: 7280252--7280343 Score: 70
Period size: 21 Copynumber: 4.3 Consensus size: 22
7280242 GAAATCCACG
7280252 TCCAAAATTTCT-AA-ATTCACA
1 TCCAAAATTT-TAAAGATTCACA
*
7280273 T--AAAATTTTTCAAAG-GTCACA
1 TCCAAAA-TTTT-AAAGATTCACA
*
7280294 TCCAAAA-TTTAAATATTCACA
1 TCCAAAATTTTAAAGATTCACA
**
7280315 TTTGAAAATTTTAAAGATTCACA
1 -TCCAAAATTTTAAAGATTCACA
7280338 TCCAAA
1 TCCAAA
7280344 TTTCAAAAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 17
0.68 0.10 0.22
Matches are distributed among these distances:
19 5 0.09
20 6 0.11
21 17 0.31
22 9 0.17
23 17 0.31
ACGTcount: A:0.45, C:0.17, G:0.04, T:0.34
Consensus pattern (22 bp):
TCCAAAATTTTAAAGATTCACA
Found at i:7280346 original size:21 final size:21
Alignment explanation
Indices: 7280289--7280346 Score: 62
Period size: 23 Copynumber: 2.7 Consensus size: 21
7280279 TTTTCAAAGG
* *
7280289 TCACATCCAAAATTTAAATAT
1 TCACATCCAAATTTTAAAGAT
**
7280310 TCACATTTGAAAATTTTAAAGAT
1 TCACA--TCCAAATTTTAAAGAT
7280333 TCACATCCAAATTT
1 TCACATCCAAATTT
7280347 CAAAAATCTT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
21 12 0.41
23 17 0.59
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (21 bp):
TCACATCCAAATTTTAAAGAT
Found at i:7280515 original size:21 final size:21
Alignment explanation
Indices: 7280486--7280526 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7280476 AAATTCAAAA
* *
7280486 ATTTTCATTCGAAACTTAAAG
1 ATTTGCATTCGAAACATAAAG
*
7280507 ATTTGCATTTGAAACATAAA
1 ATTTGCATTCGAAACATAAA
7280527 TTTGAATGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (21 bp):
ATTTGCATTCGAAACATAAAG
Found at i:7286393 original size:211 final size:211
Alignment explanation
Indices: 7286028--7286436 Score: 712
Period size: 211 Copynumber: 1.9 Consensus size: 211
7286018 CTACTACTAT
* * *
7286028 TATCAATTATTGCTTTTAAAATTTTATCTAAATTTTTCCTCTATTTGAATTAAATTTTTAAAAAA
1 TATCAATTATTGCTTTTAAAATTATATCTAAATTTTTCCTCCATTTAAATTAAA-TTTTAAAAAA
* **
7286093 AATCTCTCATCTAAAAATTTTTTAGAAAATTATCCATTTATAATTTCTAAAAATTTCATCTTAGG
65 AATCTCTCATCTAAAAATTTCTTAGAAAATTATCCATAAATAATTTCTAAAAATTTCATCTTAGG
*
7286158 ATAATTACTATTTATTTTTCATGATTTTTTTAAAGTTTTATTTTACCTTGAATTTATTTCTATTT
130 ATAATTACTATTTATTTTTCATGATTTTGTTAAAGTTTTATTTTACCTTGAATTTATTTCTATTT
7286223 ATTACTTTGAAAATAAA
195 ATTACTTTGAAAATAAA
*
7286240 TATCAATTATTGTTTTTAAAATTATATCTAAATTTTTCCTCCATTTAAATTAAA-TTTAGAAAAA
1 TATCAATTATTGCTTTTAAAATTATATCTAAATTTTTCCTCCATTTAAATTAAATTTTA-AAAAA
*
7286304 AATCTCTCATCTAAAAATTTCTTAGAAAATTATCCATAAATAATTTCTAAACATTTCATCTTAGG
65 AATCTCTCATCTAAAAATTTCTTAGAAAATTATCCATAAATAATTTCTAAAAATTTCATCTTAGG
7286369 ATAATTACTATTTATTTTTCATGATTTTGTTAAAGTTTTATTTTACCTTGAATTTATTTCTATTT
130 ATAATTACTATTTATTTTTCATGATTTTGTTAAAGTTTTATTTTACCTTGAATTTATTTCTATTT
7286434 ATT
195 ATT
7286437 TTTATTAATC
Statistics
Matches: 187, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
210 4 0.02
211 133 0.71
212 50 0.27
ACGTcount: A:0.35, C:0.11, G:0.04, T:0.50
Consensus pattern (211 bp):
TATCAATTATTGCTTTTAAAATTATATCTAAATTTTTCCTCCATTTAAATTAAATTTTAAAAAAA
ATCTCTCATCTAAAAATTTCTTAGAAAATTATCCATAAATAATTTCTAAAAATTTCATCTTAGGA
TAATTACTATTTATTTTTCATGATTTTGTTAAAGTTTTATTTTACCTTGAATTTATTTCTATTTA
TTACTTTGAAAATAAA
Found at i:7287182 original size:18 final size:19
Alignment explanation
Indices: 7287156--7287191 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7287146 TGGAATAGAA
*
7287156 AAATGAAAAT-AATAAAGT
1 AAATAAAAATAAATAAAGT
7287174 AAATAAAAATAAATAAAG
1 AAATAAAAATAAATAAAG
7287192 CACAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.19
Consensus pattern (19 bp):
AAATAAAAATAAATAAAGT
Found at i:7294850 original size:21 final size:21
Alignment explanation
Indices: 7294811--7294851 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7294801 GCTTAAAAAC
*
7294811 TTAAATTAAACTTGCAGAAAT
1 TTAAATTAAACTTGAAGAAAT
7294832 TTAAATT-AACTTGAAAGAAA
1 TTAAATTAAACTTG-AAGAAA
7294852 CTGAATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.32
Consensus pattern (21 bp):
TTAAATTAAACTTGAAGAAAT
Found at i:7300038 original size:42 final size:39
Alignment explanation
Indices: 7299981--7300059 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 39
7299971 ATTCATATAG
*
7299981 ACTACAGTTGGAAAAAGAAACGTAGTCTATTGTGACATATGA
1 ACTACAGTT-GAAAAA-AAACGTAGTCTATTAT-ACATATGA
* *
7300023 ACTACATTTGAAAAAAAATGTAGTCTATTATACATAT
1 ACTACAGTTGAAAAAAAACGTAGTCTATTATACATAT
7300060 ACATTACGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 6 0.18
40 14 0.41
41 6 0.18
42 8 0.24
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.30
Consensus pattern (39 bp):
ACTACAGTTGAAAAAAAACGTAGTCTATTATACATATGA
Found at i:7317393 original size:21 final size:21
Alignment explanation
Indices: 7317369--7317408 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7317359 TTGTTGATTA
7317369 TGTTAGATTGAGCTTGAATGG
1 TGTTAGATTGAGCTTGAATGG
* *
7317390 TGTTTGATTGAGGTTGAAT
1 TGTTAGATTGAGCTTGAAT
7317409 TGATGTGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.03, G:0.33, T:0.42
Consensus pattern (21 bp):
TGTTAGATTGAGCTTGAATGG
Found at i:7319294 original size:20 final size:20
Alignment explanation
Indices: 7319265--7319305 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7319255 CTTTTTGGTA
* *
7319265 TTTATTTTATTTTATTTATT
1 TTTATCTTATGTTATTTATT
7319285 TTTATCTTATGTTATTTATT
1 TTTATCTTATGTTATTTATT
7319305 T
1 T
7319306 AAGTTTCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTATCTTATGTTATTTATT
Found at i:7322830 original size:35 final size:35
Alignment explanation
Indices: 7322762--7322830 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
7322752 AAAGAAATTT
** *
7322762 TATTATTATCTTTACTTTTGTTTTTATTTATTATC
1 TATTATTATCTTTACTTTTCATTTTATTCATTATC
*
7322797 TATTATTATTTTTAGCTTTTCATTTT-TTCATTAT
1 TATTATTATCTTTA-CTTTTCATTTTATTCATTAT
7322831 TTTTATTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 20 0.69
36 9 0.31
ACGTcount: A:0.20, C:0.09, G:0.03, T:0.68
Consensus pattern (35 bp):
TATTATTATCTTTACTTTTCATTTTATTCATTATC
Found at i:7325740 original size:2 final size:2
Alignment explanation
Indices: 7325733--7325766 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7325723 CAGTTATCAA
7325733 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7325767 ATATATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7331278 original size:32 final size:32
Alignment explanation
Indices: 7331242--7331310 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
7331232 ACTTGATAAA
7331242 ATATTCACACTGAAGTTCAACTTCAGATTTAT
1 ATATTCACACTGAAGTTCAACTTCAGATTTAT
7331274 ATATTCACACTGAAGTTCAACTTCAGATTTAT
1 ATATTCACACTGAAGTTCAACTTCAGATTTAT
7331306 ATATT
1 ATATT
7331311 TTAAACTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (32 bp):
ATATTCACACTGAAGTTCAACTTCAGATTTAT
Found at i:7333550 original size:25 final size:24
Alignment explanation
Indices: 7333504--7333634 Score: 76
Period size: 23 Copynumber: 5.5 Consensus size: 24
7333494 ATTTTTGTTG
* * *
7333504 AAAAGATAAAAAAATTA-TTTTTT
1 AAAATATAAAAAAATAACGTTTTT
* *
7333527 ATAATTTAACAAAAATAACGTTTTT
1 AAAATATAA-AAAAATAACGTTTTT
*
7333552 -AAA-ATAAAAAAGTAATC-TTTATT
1 AAAATATAAAAAAATAA-CGTTT-TT
* * *
7333575 AAAATATAAAAATATTA-TTTTTT
1 AAAATATAAAAAAATAACGTTTTT
* *
7333598 AAAATTTAACAAAAATGACGTTTTT
1 AAAATATAA-AAAAATAACGTTTTT
*
7333623 AAGATA-AAAAAA
1 AAAATATAAAAAA
7333635 TATAGTCTTT
Statistics
Matches: 82, Mismatches: 17, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
22 10 0.12
23 26 0.32
24 23 0.28
25 23 0.28
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.37
Consensus pattern (24 bp):
AAAATATAAAAAAATAACGTTTTT
Done.