Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 47 of 190
Found at i:7896134 original size:32 final size:32
Alignment explanation
Indices: 7896093--7896155 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
7896083 TAAAATAATT
*
7896093 ATACAAATAAATATATTAATAATCATACAATC
1 ATACAAATAAATAAATTAATAATCATACAATC
* *
7896125 ATACAAATAAGTAAATTAATAATCATGCAAT
1 ATACAAATAAATAAATTAATAATCATACAAT
7896156 TAACAATGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.56, C:0.11, G:0.03, T:0.30
Consensus pattern (32 bp):
ATACAAATAAATAAATTAATAATCATACAATC
Found at i:7896205 original size:20 final size:20
Alignment explanation
Indices: 7896182--7896298 Score: 61
Period size: 22 Copynumber: 6.0 Consensus size: 20
7896172 GTAAATAAAT
7896182 ATGCAATTAAATATATAATC
1 ATGCAATTAAATATATAATC
* *
7896202 ATGCAAATAGTAATATATAAACC
1 ATGCAATTA--AATATAT-AATC
7896225 ATGC-----AA-ATA-AA-C
1 ATGCAATTAAATATATAATC
*
7896237 ATGCAATTAAATATATAACC
1 ATGCAATTAAATATATAATC
* *
7896257 ATGCAAATAATAATATATAAATT
1 ATGC-AATTA-AATATAT-AATC
* *
7896280 ATGCAAATAAATATGTAAT
1 ATGCAATTAAATATATAAT
7896299 AGAATATATA
Statistics
Matches: 75, Mismatches: 8, Indels: 28
0.68 0.07 0.25
Matches are distributed among these distances:
12 5 0.07
13 2 0.03
15 3 0.04
16 2 0.03
17 2 0.03
18 3 0.04
19 2 0.03
20 16 0.21
21 10 0.13
22 17 0.23
23 13 0.17
ACGTcount: A:0.53, C:0.10, G:0.07, T:0.30
Consensus pattern (20 bp):
ATGCAATTAAATATATAATC
Found at i:7896219 original size:22 final size:23
Alignment explanation
Indices: 7896191--7896233 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7896181 TATGCAATTA
*
7896191 AATATAT-AATCATGCAAATAGT
1 AATATATAAACCATGCAAATAGT
7896213 AATATATAAACCATGCAAATA
1 AATATATAAACCATGCAAATA
7896234 AACATGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.53, C:0.12, G:0.07, T:0.28
Consensus pattern (23 bp):
AATATATAAACCATGCAAATAGT
Found at i:7896240 original size:35 final size:32
Alignment explanation
Indices: 7896196--7896329 Score: 99
Period size: 32 Copynumber: 4.4 Consensus size: 32
7896186 AATTAAATAT
*
7896196 ATAATCATGCAAATAGTAATATATAAACCATGCAA
1 ATAAACATGCAAATA--AATATAT-AACCATGCAA
*
7896231 ATAAACATGCAATTAAATATATAACCATGCAA
1 ATAAACATGCAAATAAATATATAACCATGCAA
**
7896263 AT--A-AT---AAT--ATATA-AATTATGCAA
1 ATAAACATGCAAATAAATATATAACCATGCAA
* * *
7896286 ATAAATATG-TAATAGAATATATAATCATGCAA
1 ATAAACATGCAAATA-AATATATAACCATGCAA
7896318 ATAAACATGCAA
1 ATAAACATGCAA
7896330 TTGAATATCT
Statistics
Matches: 81, Mismatches: 8, Indels: 22
0.73 0.07 0.20
Matches are distributed among these distances:
23 10 0.12
24 5 0.06
25 1 0.01
26 4 0.05
28 3 0.04
29 2 0.02
30 1 0.01
31 5 0.06
32 29 0.36
33 8 0.10
35 13 0.16
ACGTcount: A:0.54, C:0.11, G:0.07, T:0.28
Consensus pattern (32 bp):
ATAAACATGCAAATAAATATATAACCATGCAA
Found at i:7896246 original size:55 final size:55
Alignment explanation
Indices: 7896143--7896321 Score: 238
Period size: 55 Copynumber: 3.3 Consensus size: 55
7896133 AAGTAAATTA
* * * *
7896143 ATAATCATGCAATTAA-CA-ATGTAAATCATGTAAATAAATATGCAATTAAATAT
1 ATAATCATGCAAATAATAATATATAAATCATGCAAATAAATATGCAATTAAATAT
* * *
7896196 ATAATCATGCAAATAGTAATATATAAACCATGCAAATAAACATGCAATTAAATAT
1 ATAATCATGCAAATAATAATATATAAATCATGCAAATAAATATGCAATTAAATAT
* * *
7896251 ATAACCATGCAAATAATAATATATAAATTATGCAAATAAATATGTAA-TAGAATAT
1 ATAATCATGCAAATAATAATATATAAATCATGCAAATAAATATGCAATTA-AATAT
7896306 ATAATCATGCAAATAA
1 ATAATCATGCAAATAA
7896322 ACATGCAATT
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 14 0.13
54 3 0.03
55 92 0.84
ACGTcount: A:0.53, C:0.10, G:0.07, T:0.30
Consensus pattern (55 bp):
ATAATCATGCAAATAATAATATATAAATCATGCAAATAAATATGCAATTAAATAT
Found at i:7896262 original size:32 final size:31
Alignment explanation
Indices: 7896213--7896330 Score: 108
Period size: 32 Copynumber: 4.0 Consensus size: 31
7896203 TGCAAATAGT
7896213 AATATATAAACCATGCAAATAAACATGCAATTA
1 AATATAT-AACCATGCAAATAAACATGCAA-TA
7896246 AATATATAACCATGCAAAT--A-AT--AAT-
1 AATATATAACCATGCAAATAAACATGCAATA
** * *
7896271 -ATATA-AATTATGCAAATAAATATGTAATA
1 AATATATAACCATGCAAATAAACATGCAATA
*
7896300 GAATATATAATCATGCAAATAAACATGCAAT
1 -AATATATAACCATGCAAATAAACATGCAAT
7896331 TGAATATCTA
Statistics
Matches: 71, Mismatches: 5, Indels: 19
0.75 0.05 0.20
Matches are distributed among these distances:
23 10 0.14
24 5 0.07
25 1 0.01
26 3 0.04
27 2 0.03
28 3 0.04
29 2 0.03
30 1 0.01
31 5 0.07
32 32 0.45
33 7 0.10
ACGTcount: A:0.54, C:0.11, G:0.07, T:0.28
Consensus pattern (31 bp):
AATATATAACCATGCAAATAAACATGCAATA
Found at i:7896336 original size:32 final size:32
Alignment explanation
Indices: 7896268--7896350 Score: 112
Period size: 32 Copynumber: 2.6 Consensus size: 32
7896258 TGCAAATAAT
* *
7896268 AATATATAAATTATGCAAATAAATATGTAATAG
1 AATATAT-AATTATGCAAATAAACATGCAATAG
* *
7896301 AATATATAATCATGCAAATAAACATGCAATTG
1 AATATATAATTATGCAAATAAACATGCAATAG
*
7896333 AATATCTAATTATGCAAA
1 AATATATAATTATGCAAA
7896351 AAAATATATT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 37 0.84
33 7 0.16
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.31
Consensus pattern (32 bp):
AATATATAATTATGCAAATAAACATGCAATAG
Found at i:7896398 original size:24 final size:24
Alignment explanation
Indices: 7896339--7896447 Score: 107
Period size: 24 Copynumber: 4.6 Consensus size: 24
7896329 ATTGAATATC
*
7896339 TAATTATGCAAAAAAATATATTAA
1 TAATTATGCAAATAAATATATTAA
* * *
7896363 CAATTAGGCAATTAAATATATTAA
1 TAATTATGCAAATAAATATATTAA
*
7896387 TAATTATGC-AATCAAAT-TA-AATA
1 TAATTATGCAAAT-AAATATATTA-A
* *
7896410 TAATCATACAAATAAATATATTAA
1 TAATTATGCAAATAAATATATTAA
*
7896434 TAATCATGCAAATA
1 TAATTATGCAAATA
7896448 TATTAATAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
22 1 0.01
23 16 0.24
24 50 0.74
25 1 0.01
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.33
Consensus pattern (24 bp):
TAATTATGCAAATAAATATATTAA
Found at i:7896466 original size:21 final size:20
Alignment explanation
Indices: 7896423--7896468 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
7896413 TCATACAAAT
**
7896423 AAATATATTAATAATCATGC
1 AAATATATTAATAATCACAC
7896443 AAATATATTAATAAATCACAC
1 AAATATATTAAT-AATCACAC
7896464 AAATA
1 AAATA
7896469 AATATCTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATATATTAATAATCACAC
Found at i:7896479 original size:45 final size:46
Alignment explanation
Indices: 7896375--7896498 Score: 153
Period size: 45 Copynumber: 2.7 Consensus size: 46
7896365 ATTAGGCAAT
* * *
7896375 TAAATATATTAATAATTATGC-AATCAAATTAAATATAATCATACAAA
1 TAAATATATTAATAATCATGCAAAT-ATATT-AATATAATCACACAAA
7896422 TAAATATATTAATAATCATGCAAATATATTAATA-AATCACACAAA
1 TAAATATATTAATAATCATGCAAATATATTAATATAATCACACAAA
* * *
7896467 TAAATATCTTAATCATGCATACAAATATATTA
1 TAAATATATTAATAAT-CATGCAAATATATTA
7896499 GGCAAATAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
45 24 0.35
46 18 0.26
47 24 0.35
48 3 0.04
ACGTcount: A:0.53, C:0.10, G:0.02, T:0.34
Consensus pattern (46 bp):
TAAATATATTAATAATCATGCAAATATATTAATATAATCACACAAA
Found at i:7896490 original size:25 final size:23
Alignment explanation
Indices: 7896409--7896493 Score: 86
Period size: 24 Copynumber: 3.7 Consensus size: 23
7896399 CAAATTAAAT
7896409 ATAATCATACAAATAAATATATTA
1 ATAATCATACAAATAAATAT-TTA
*
7896433 ATAATCATGCAAAT--ATA-TTA
1 ATAATCATACAAATAAATATTTA
*
7896453 ATAAATCACACAAATAAATATCTTA
1 AT-AATCATACAAATAAATAT-TTA
*
7896478 ATCATGCATACAAATA
1 ATAAT-CATACAAATA
7896494 TATTAGGCAA
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
20 5 0.10
21 10 0.20
22 3 0.06
23 3 0.06
24 15 0.30
25 14 0.28
ACGTcount: A:0.54, C:0.13, G:0.02, T:0.31
Consensus pattern (23 bp):
ATAATCATACAAATAAATATTTA
Found at i:7897164 original size:20 final size:20
Alignment explanation
Indices: 7897131--7897177 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
7897121 GACTCTTTTG
*
7897131 ACTAAAAAAATAAAA-ATTAA
1 ACTAAAATAATAAAATA-TAA
*
7897151 ACTAAAATATTAAAATATAA
1 ACTAAAATAATAAAATATAA
7897171 A-TAAAAT
1 ACTAAAAT
7897178 TTAGGGCTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.25
20 17 0.71
21 1 0.04
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (20 bp):
ACTAAAATAATAAAATATAA
Found at i:7898650 original size:17 final size:17
Alignment explanation
Indices: 7898614--7898649 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
7898604 ACTATTTTTT
7898614 AAATAAAATAACAATAA
1 AAATAAAATAACAATAA
*
7898631 AAATAAAA-AATAATAA
1 AAATAAAATAACAATAA
7898647 AAA
1 AAA
7898650 AAAGGAAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.17
Consensus pattern (17 bp):
AAATAAAATAACAATAA
Found at i:7905747 original size:109 final size:108
Alignment explanation
Indices: 7905491--7905763 Score: 291
Period size: 108 Copynumber: 2.5 Consensus size: 108
7905481 ATTTTCTTCG
* * * * * *
7905491 GTGGTGATATATGAA-AAAGTCAAAATCACTTGATGGTGATATCTGAGTATTAAAATTTGAATTT
1 GTGGTGATATCTGAAGACA-TCAAAATCACTTGGTGGTGATATTTGAGTATTAAAATCTAAATTT
* * * *
7905555 TATCTTCTTGATAGTGATATTCGATCCCTTCGTTAAACAATTTA
65 GATCTTCTTCATAGTGATATTCGATCCCTTCATTAAACAATTCA
* * ** * *
7905599 GTGGTGATATCTGAAGATATCAAAATAACTCAGTAGTGATATTTGAGTATTAAAGTCTAAATTTG
1 GTGGTGATATCTGAAGACATCAAAATCACTTGGTGGTGATATTTGAGTATTAAAATCTAAATTTG
* * * *
7905664 AT-TTTTTCAGTGGTGATATTTGATCTCTTTCATTAAACAATTCA
66 ATCTTCTTCA-TAGTGATATTCGATC-CCTTCATTAAACAATTCA
* *
7905708 GTGGTGATATCCT-AAGACATGAAAATCACTTGGTGGTGATATTTGAGTATTGAAAT
1 GTGGTGATAT-CTGAAGACATCAAAATCACTTGGTGGTGATATTTGAGTATTAAAAT
7905764 TTGAATTTTG
Statistics
Matches: 134, Mismatches: 27, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
107 5 0.04
108 65 0.49
109 62 0.46
110 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.38
Consensus pattern (108 bp):
GTGGTGATATCTGAAGACATCAAAATCACTTGGTGGTGATATTTGAGTATTAAAATCTAAATTTG
ATCTTCTTCATAGTGATATTCGATCCCTTCATTAAACAATTCA
Found at i:7905946 original size:33 final size:35
Alignment explanation
Indices: 7905863--7905946 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 35
7905853 CCGAGTTCTT
* * *
7905863 TTCAGTGGCAATATCTGAAGTTATTTGCATTTTTTC
1 TTCAGTGACAATATCCGAAGTCATTTGCA-TTTTTC
*
7905899 TTCGGTGACAATATCCGAAGTCATTTGCA-TTTTC
1 TTCAGTGACAATATCCGAAGTCATTTGCATTTTTC
*
7905933 -TCAGTGACGATATC
1 TTCAGTGACAATATC
7905947 TGAGTTCCCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
33 12 0.29
34 5 0.12
36 25 0.60
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (35 bp):
TTCAGTGACAATATCCGAAGTCATTTGCATTTTTC
Found at i:7906292 original size:46 final size:46
Alignment explanation
Indices: 7906226--7906330 Score: 149
Period size: 46 Copynumber: 2.3 Consensus size: 46
7906216 ATGTTTTAAA
* *
7906226 TTTTAAAGTTGTTGAGCCTCTAATGAGA-GAAGCATTTCAATTTGAT
1 TTTTAAAGTTGTTGAACCTCTAATGAAATG-AGCATTTCAATTTGAT
* * *
7906272 TTTTAAAATTGTTGAACCTCTAATGAAATGAGCATTTTAGTTTGAT
1 TTTTAAAGTTGTTGAACCTCTAATGAAATGAGCATTTCAATTTGAT
7906318 TTTTAAAGTTGTT
1 TTTTAAAGTTGTT
7906331 AAGTTTTTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 51 0.98
47 1 0.02
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.44
Consensus pattern (46 bp):
TTTTAAAGTTGTTGAACCTCTAATGAAATGAGCATTTCAATTTGAT
Found at i:7907713 original size:6 final size:6
Alignment explanation
Indices: 7907692--7907745 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
7907682 AACTTTATTC
* * *
7907692 ATTTTT -TTTGT ATTTTT ATTTTT ATTTGT A-TTTT -TTTTT ACTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
*
7907737 ATTATT ATT
1 ATTTTT ATT
7907746 AACATTTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
5 11 0.29
6 27 0.71
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.78
Consensus pattern (6 bp):
ATTTTT
Found at i:7907719 original size:18 final size:17
Alignment explanation
Indices: 7907692--7907730 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
7907682 AACTTTATTC
7907692 ATTTTTTTTGTATTTTT
1 ATTTTTTTTGTATTTTT
7907709 ATTTTTATTTGTATTTTT
1 ATTTTT-TTTGTATTTTT
7907727 -TTTT
1 ATTTT
7907731 ACTTTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.13, C:0.00, G:0.05, T:0.82
Consensus pattern (17 bp):
ATTTTTTTTGTATTTTT
Found at i:7907739 original size:16 final size:17
Alignment explanation
Indices: 7907692--7907745 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
7907682 AACTTTATTC
7907692 ATTTTT-TTTGTATTTTT
1 ATTTTTATTTGTA-TTTT
7907709 ATTTTTATTTGTATTTT
1 ATTTTTATTTGTATTTT
7907726 -TTTTTACTTT-TATTATT
1 ATTTTTA-TTTGTATT-TT
7907743 ATT
1 ATT
7907746 AACATTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
16 10 0.30
17 15 0.45
18 8 0.24
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.78
Consensus pattern (17 bp):
ATTTTTATTTGTATTTT
Found at i:7907752 original size:28 final size:29
Alignment explanation
Indices: 7907691--7907756 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
7907681 TAACTTTATT
* * **
7907691 CATTTTTTTTGTATTTTTATTTTTATTTG
1 CATTTTTTTTGTACTTTTATTATTATTAA
*
7907720 TATTTTTTTT-TACTTTTATTATTATTAA
1 CATTTTTTTTGTACTTTTATTATTATTAA
7907748 CATTTTTTT
1 CATTTTTTT
7907757 AATTTTTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
28 22 0.71
29 9 0.29
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (29 bp):
CATTTTTTTTGTACTTTTATTATTATTAA
Found at i:7907799 original size:30 final size:27
Alignment explanation
Indices: 7907757--7907816 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
7907747 ACATTTTTTT
*
7907757 AATTTTTTTTATTAATGTTCAAATATAAA
1 AATTTTTATTATT-ATGTTCAAA-ATAAA
* *
7907786 AATTTATTATTATTATTTTTAAAATAAA
1 AATTT-TTATTATTATGTTCAAAATAAA
7907814 AAT
1 AAT
7907817 AAAAATTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 8 0.30
29 12 0.44
30 7 0.26
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (27 bp):
AATTTTTATTATTATGTTCAAAATAAA
Found at i:7911189 original size:23 final size:24
Alignment explanation
Indices: 7911163--7911208 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
7911153 AATTATTAGA
*
7911163 TGCATAGTTAAATTAC-ATATTGG
1 TGCATAGTTAAATAACAATATTGG
7911186 TGCATAGTTAAATAACAATATTG
1 TGCATAGTTAAATAACAATATTG
7911209 TTGAAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (24 bp):
TGCATAGTTAAATAACAATATTGG
Found at i:7912270 original size:227 final size:227
Alignment explanation
Indices: 7911875--7912324 Score: 738
Period size: 227 Copynumber: 2.0 Consensus size: 227
7911865 ATGAAGTGAA
* **
7911875 TGAAGTTAATGATGATAATGAAGTTACTAGTAAATGTTTAGGGTTTGTTGAGGGATTGAATGCAA
1 TGAAGTTAATGATGATAATGAAGTTACTAGTAAAGGTTTAGGGTTTGTCAAGGGATTGAATGCAA
* * *
7911940 GTGAAGTGAATGTGAATGATGGTAATGTTAATGATAATAATGAAACTTTAAGTGAAAATGGTGAT
66 GTGAAATGAATGTGAATGATGGTAATGTTAATGATAATAATGAAACTTTAAATAAAAATGGTGAT
* *
7912005 GAAAGGTTGGTGGATGTAAATTGGGTTTCTAATGATGATTCTACAACTGATGATGAGTTGGAGAA
131 GAAAGGTTGGTGGATGTAAATTGGGTTTCTAATGATGATTCTACAACTGATGATGAGTTAGAAAA
**
7912070 AGCTAGGTAGAATATTAGAGTTTATTTTTAAG
196 AGCTAAATAGAATATTAGAGTTTATTTTTAAG
* * *
7912102 TGAAGTTAATGATGATAATGAAGTTACTATTAAGGGTTTAGGGTTTGTCAAGGGATTGAATGCAG
1 TGAAGTTAATGATGATAATGAAGTTACTAGTAAAGGTTTAGGGTTTGTCAAGGGATTGAATGCAA
* *
7912167 GTGAAATGAATGTGAATGATGTTAATGTTAATGATAATAATGAAATTTTAAATAAAAATGGTGAT
66 GTGAAATGAATGTGAATGATGGTAATGTTAATGATAATAATGAAACTTTAAATAAAAATGGTGAT
* * *
7912232 GAGAGGTTGGTGGATGTAAATTGGGTTTTTAATGATGATTTTACAACTGATGATGAGTTAGAAAA
131 GAAAGGTTGGTGGATGTAAATTGGGTTTCTAATGATGATTCTACAACTGATGATGAGTTAGAAAA
7912297 AGCTAAATAGAATATTAGAGTTTATTTT
196 AGCTAAATAGAATATTAGAGTTTATTTT
7912325 GAGAAAAAAA
Statistics
Matches: 205, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
227 205 1.00
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (227 bp):
TGAAGTTAATGATGATAATGAAGTTACTAGTAAAGGTTTAGGGTTTGTCAAGGGATTGAATGCAA
GTGAAATGAATGTGAATGATGGTAATGTTAATGATAATAATGAAACTTTAAATAAAAATGGTGAT
GAAAGGTTGGTGGATGTAAATTGGGTTTCTAATGATGATTCTACAACTGATGATGAGTTAGAAAA
AGCTAAATAGAATATTAGAGTTTATTTTTAAG
Found at i:7915570 original size:11 final size:12
Alignment explanation
Indices: 7915532--7915581 Score: 55
Period size: 12 Copynumber: 3.9 Consensus size: 12
7915522 ATGAAAAAAT
7915532 AATTAATATGTAAA
1 AATTAAT-T-TAAA
7915546 AATTAATTTAAA
1 AATTAATTTAAA
*
7915558 AATTAATTGAAA
1 AATTAATTTAAA
*
7915570 AGTTATATTTAA
1 AATTA-ATTTAA
7915582 TATATTTAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
12 19 0.59
13 6 0.19
14 7 0.22
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (12 bp):
AATTAATTTAAA
Found at i:7916458 original size:10 final size:10
Alignment explanation
Indices: 7916443--7916472 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
7916433 AGGGAGAAAG
7916443 AAGAAAAAAA
1 AAGAAAAAAA
7916453 AAGAAAAAAA
1 AAGAAAAAAA
7916463 AGAGAAAAAA
1 A-AGAAAAAA
7916473 TTAATTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.58
11 8 0.42
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAGAAAAAAA
Found at i:7917735 original size:2 final size:2
Alignment explanation
Indices: 7917730--7917760 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7917720 ACACACACAC
7917730 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7917761 ACCAAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7918254 original size:19 final size:19
Alignment explanation
Indices: 7918230--7918266 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7918220 TATTTATGAA
*
7918230 TTTAAATAAATTTGAATAT
1 TTTAAATAAATTTAAATAT
*
7918249 TTTAAATGAATTTAAATA
1 TTTAAATAAATTTAAATA
7918267 ATAGTAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (19 bp):
TTTAAATAAATTTAAATAT
Found at i:7919762 original size:6 final size:6
Alignment explanation
Indices: 7919753--7919786 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
7919743 CTTCCACTAC
*
7919753 CACAGT CACAGT CACAGT CACAGT CACACT CACA
1 CACAGT CACAGT CACAGT CACAGT CACAGT CACA
7919787 ACCACAGATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.35, C:0.38, G:0.12, T:0.15
Consensus pattern (6 bp):
CACAGT
Found at i:7919792 original size:18 final size:18
Alignment explanation
Indices: 7919751--7919793 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7919741 CACTTCCACT
*
7919751 ACCACAGTCACAGTCACA
1 ACCACAGTCACACTCACA
**
7919769 GTCACAGTCACACTCACA
1 ACCACAGTCACACTCACA
7919787 ACCACAG
1 ACCACAG
7919794 ATGAATGGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.40, G:0.12, T:0.12
Consensus pattern (18 bp):
ACCACAGTCACACTCACA
Found at i:7920150 original size:52 final size:51
Alignment explanation
Indices: 7920093--7920239 Score: 188
Period size: 52 Copynumber: 2.8 Consensus size: 51
7920083 AACTTATAGA
*
7920093 AGAAGAATTTTAAGAGAAAGATGATTCTTAATAGATAAGTTTGACTTGTAAC
1 AGAAGAATTATAAGAGAAA-ATGATTCTTAATAGATAAGTTTGACTTGTAAC
* * * **
7920145 AGAAGAATTCTAAGAGTAAAAAGATTCTTAATA-AGCAAGTTTGACTTGTAGG
1 AGAAGAATTATAAGAG-AAAATGATTCTTAATAGA-TAAGTTTGACTTGTAAC
*
7920197 AGAAGAATTATAAGAGAAAATAGATTCTTAATAGGTAAGTTTG
1 AGAAGAATTATAAGAGAAAAT-GATTCTTAATAGATAAGTTTG
7920240 TATAGTTATA
Statistics
Matches: 82, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
51 5 0.06
52 74 0.90
53 3 0.04
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.31
Consensus pattern (51 bp):
AGAAGAATTATAAGAGAAAATGATTCTTAATAGATAAGTTTGACTTGTAAC
Found at i:7922863 original size:19 final size:19
Alignment explanation
Indices: 7922826--7922864 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7922816 ATTTTAAAAA
* **
7922826 TTTTAAAAATTTTCTAATT
1 TTTTAAAAATATTAAAATT
7922845 TTTTAAAAATATTAAAATT
1 TTTTAAAAATATTAAAATT
7922864 T
1 T
7922865 ATAAATTATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTTAAAAATATTAAAATT
Found at i:7923238 original size:17 final size:17
Alignment explanation
Indices: 7923216--7923249 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7923206 AATCAAATTT
7923216 AGGTTCAAGATTTTAAA
1 AGGTTCAAGATTTTAAA
7923233 AGGTTCAAGATTTTAAA
1 AGGTTCAAGATTTTAAA
7923250 TACATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.18, T:0.35
Consensus pattern (17 bp):
AGGTTCAAGATTTTAAA
Found at i:7925257 original size:22 final size:23
Alignment explanation
Indices: 7925214--7925257 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
7925204 TTTTGTTTTT
*
7925214 TTTTGTATTTTTATTTTATTAGA
1 TTTTGTATTATTATTTTATTAGA
7925237 TTTT-TATTATTAGTTTT-TTAG
1 TTTTGTATTATTA-TTTTATTAG
7925258 GTGATTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.70
Consensus pattern (23 bp):
TTTTGTATTATTATTTTATTAGA
Found at i:7926107 original size:24 final size:25
Alignment explanation
Indices: 7926061--7926109 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
7926051 CAGTCGAGCC
* * *
7926061 ATTTTTTTATTTTTCTTTGGTATTT
1 ATTTATTTATTTTTATTTAGTATTT
7926086 ATTTATTTA-TTTTATTTAGTATTT
1 ATTTATTTATTTTTATTTAGTATTT
7926110 TTCTTAGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.18, C:0.02, G:0.06, T:0.73
Consensus pattern (25 bp):
ATTTATTTATTTTTATTTAGTATTT
Found at i:7926140 original size:17 final size:17
Alignment explanation
Indices: 7926110--7926143 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7926100 TTTAGTATTT
*
7926110 TTCTTAGTATTTTTTTC
1 TTCTTAGTAGTTTTTTC
*
7926127 TTCTTGGTAGTTTTTTC
1 TTCTTAGTAGTTTTTTC
7926144 ATGATTAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.12, G:0.12, T:0.68
Consensus pattern (17 bp):
TTCTTAGTAGTTTTTTC
Found at i:7926374 original size:15 final size:16
Alignment explanation
Indices: 7926346--7926383 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
7926336 TATTTTAACA
7926346 AAAAAATACAAAATAT
1 AAAAAATACAAAATAT
*
7926362 AAAAAATA-TAAATAT
1 AAAAAATACAAAATAT
7926377 AAAAAAT
1 AAAAAAT
7926384 TTGGAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAAAATACAAAATAT
Found at i:7930571 original size:12 final size:13
Alignment explanation
Indices: 7930543--7930571 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7930533 AAAGGTCTCA
7930543 AAGAAAAAAAAGC
1 AAGAAAAAAAAGC
7930556 AAGAAAAAAAAG-
1 AAGAAAAAAAAGC
7930568 AAGA
1 AAGA
7930572 GGGCAAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.25
13 12 0.75
ACGTcount: A:0.79, C:0.03, G:0.17, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAAAGC
Found at i:7930984 original size:16 final size:16
Alignment explanation
Indices: 7930965--7931011 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
7930955 AAAAAGAAGA
7930965 GAAAAATGAGAAAAAT
1 GAAAAATGAGAAAAAT
*
7930981 GAAAAAATGA-AAAAGT
1 G-AAAAATGAGAAAAAT
7930997 GAAAAA-GAGAGAAAA
1 GAAAAATGAGA-AAAA
7931012 AGAAGACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 2 0.08
15 6 0.23
16 10 0.38
17 8 0.31
ACGTcount: A:0.70, C:0.00, G:0.21, T:0.09
Consensus pattern (16 bp):
GAAAAATGAGAAAAAT
Found at i:7931003 original size:8 final size:8
Alignment explanation
Indices: 7930966--7931002 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
7930956 AAAAGAAGAG
7930966 AAAAATGA
1 AAAAATGA
7930974 GAAAAATGA
1 -AAAAATGA
7930983 AAAAATGA
1 AAAAATGA
*
7930991 AAAAGTGA
1 AAAAATGA
7930999 AAAA
1 AAAA
7931003 GAGAGAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.73, C:0.00, G:0.16, T:0.11
Consensus pattern (8 bp):
AAAAATGA
Found at i:7932925 original size:42 final size:42
Alignment explanation
Indices: 7932861--7933133 Score: 216
Period size: 42 Copynumber: 6.5 Consensus size: 42
7932851 GATTCTCAAT
* * *
7932861 GAGCAATTTATTTTTCCAAAGTTTTATTGCCTCTATTTAGAG
1 GAGCCATTTATTTTTTCAAAGTTTTGTTGCCTCTATTTAGAG
* *
7932903 GAGCCATTTATTTTTTCAAAGTTTTTTTGCCTTTATTTAGAG
1 GAGCCATTTATTTTTTCAAAGTTTTGTTGCCTCTATTTAGAG
* * * *
7932945 GAGCCATTTATTTTTCCAAAGTTCTGTTACCTCTGTTTAGAG
1 GAGCCATTTATTTTTTCAAAGTTTTGTTGCCTCTATTTAGAG
* * * * *
7932987 AAG-CATTT-TACTTTTCAAAGTTGTGGTGCCTCTATTTATAG
1 GAGCCATTTAT-TTTTTCAAAGTTTTGTTGCCTCTATTTAGAG
** **** * * * * *
7933028 GAGTAATTTATTTAAAAAAAATTATGGTGCCTTTGTTTAGAG
1 GAGCCATTTATTTTTTCAAAGTTTTGTTGCCTCTATTTAGAG
* *
7933070 GA-ACATTT-TATTTTTCAAAAGTTGTTG-AGCCTCTATTTAGAG
1 GAGCCATTTAT-TTTTTC-AAAGTT-TTGTTGCCTCTATTTAGAG
7933112 GAG-CATTTATTTTTCTCAAAGT
1 GAGCCATTTATTTTT-TCAAAGT
7933134 CATTGAACCT
Statistics
Matches: 181, Mismatches: 41, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
40 2 0.01
41 37 0.20
42 136 0.75
43 6 0.03
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (42 bp):
GAGCCATTTATTTTTTCAAAGTTTTGTTGCCTCTATTTAGAG
Found at i:7933145 original size:42 final size:43
Alignment explanation
Indices: 7933063--7933156 Score: 113
Period size: 42 Copynumber: 2.2 Consensus size: 43
7933053 GGTGCCTTTG
* ** *
7933063 TTTAGAGGAACATTTTATTTTTCAAAAGTTGTTGAGCCTCT-A
1 TTTAGAGGAGCATTTTATTTTTCAAAAGTCATTGAACCTCTGA
*
7933105 TTTAGAGGAGCA-TTTATTTTTCTCAAAGTCATTGAACCTCTGA
1 TTTAGAGGAGCATTTTATTTTTC-AAAAGTCATTGAACCTCTGA
7933148 -TTAGAGGAG
1 TTTAGAGGAG
7933157 TTTTTTTTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
41 10 0.22
42 34 0.76
43 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (43 bp):
TTTAGAGGAGCATTTTATTTTTCAAAAGTCATTGAACCTCTGA
Found at i:7933460 original size:15 final size:15
Alignment explanation
Indices: 7933451--7933484 Score: 54
Period size: 13 Copynumber: 2.4 Consensus size: 15
7933441 TTTTTTTGTA
7933451 TTTTTATTTTATTAG
1 TTTTTATTTTATTAG
7933466 TTTTTA--TTATTAG
1 TTTTTATTTTATTAG
7933479 TTTTTA
1 TTTTTA
7933485 AGGTGATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.68
15 6 0.32
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (15 bp):
TTTTTATTTTATTAG
Found at i:7934348 original size:12 final size:12
Alignment explanation
Indices: 7934317--7934360 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
7934307 TTGTTCTTTG
7934317 GTATTTTATTTA
1 GTATTTTATTTA
*
7934329 TTTATTTTATTTA
1 -GTATTTTATTTA
7934342 GTATTTT-TCTTA
1 GTATTTTAT-TTA
7934354 GTATTTT
1 GTATTTT
7934361 TTTCTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 1 0.04
12 16 0.57
13 11 0.39
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.70
Consensus pattern (12 bp):
GTATTTTATTTA
Found at i:7940049 original size:29 final size:29
Alignment explanation
Indices: 7939990--7940049 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
7939980 AAAATAAATG
*
7939990 AAATAAATATAAAAATAAGAATAGTGATA
1 AAATAAATATAAAAATAAGAATAATGATA
* *
7940019 AAATAAA-ATATAAAATAATAATAATGGTA
1 AAATAAATATA-AAAATAAGAATAATGATA
7940048 AA
1 AA
7940050 TATAGAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 3 0.11
29 24 0.89
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (29 bp):
AAATAAATATAAAAATAAGAATAATGATA
Found at i:7940250 original size:21 final size:21
Alignment explanation
Indices: 7940225--7940264 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7940215 ATCTAAAATA
7940225 AAGATTCATAACTTGAAATTT
1 AAGATTCATAACTTGAAATTT
* *
7940246 AAGATTTATAATTTGAAAT
1 AAGATTCATAACTTGAAAT
7940265 GCAACGATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (21 bp):
AAGATTCATAACTTGAAATTT
Found at i:7940476 original size:18 final size:18
Alignment explanation
Indices: 7940418--7940500 Score: 62
Period size: 18 Copynumber: 4.7 Consensus size: 18
7940408 TAAGATGTTT
*
7940418 AGATTCATAAGAATTTAA
1 AGATTCATAAGAACTTAA
* ** **
7940436 AAATTTGTAA-AACTTTC
1 AGATTCATAAGAACTTAA
7940453 AGATTCATAAGAA-TTCAA
1 AGATTCATAAGAACTT-AA
* *
7940471 AGATTCCTAAAAACTTAA
1 AGATTCATAAGAACTTAA
*
7940489 AGATTCGTAAGA
1 AGATTCATAAGA
7940501 CTTTTAGATT
Statistics
Matches: 47, Mismatches: 15, Indels: 6
0.69 0.22 0.09
Matches are distributed among these distances:
17 13 0.28
18 32 0.68
19 2 0.04
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (18 bp):
AGATTCATAAGAACTTAA
Found at i:7940482 original size:35 final size:36
Alignment explanation
Indices: 7940418--7940500 Score: 96
Period size: 35 Copynumber: 2.3 Consensus size: 36
7940408 TAAGATGTTT
* ** **
7940418 AGATTCATAAGAATTTAAAAATTTGT-AAAACTTTC
1 AGATTCATAAGAATTCAAAAATTCCTAAAAACTTAA
*
7940453 AGATTCATAAGAATTCAAAGATTCCTAAAAACTTAA
1 AGATTCATAAGAATTCAAAAATTCCTAAAAACTTAA
*
7940489 AGATTCGTAAGA
1 AGATTCATAAGA
7940501 CTTTTAGATT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
35 22 0.55
36 18 0.45
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (36 bp):
AGATTCATAAGAATTCAAAAATTCCTAAAAACTTAA
Found at i:7942733 original size:14 final size:14
Alignment explanation
Indices: 7942716--7942746 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7942706 TGAAACCTCG
7942716 AATTTCAAACCCTA
1 AATTTCAAACCCTA
*
7942730 AATTTCAAACCTTA
1 AATTTCAAACCCTA
7942744 AAT
1 AAT
7942747 CACCTAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (14 bp):
AATTTCAAACCCTA
Found at i:7942783 original size:20 final size:19
Alignment explanation
Indices: 7942754--7942806 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
7942744 AATCACCTAG
*
7942754 AAACCCTAAACCATTATTGA
1 AAACCTTAAACCATTATT-A
* *
7942774 AAACCTTAAACCACTATTC
1 AAACCTTAAACCATTATTA
*
7942793 AAACCTAAAACCAT
1 AAACCTTAAACCAT
7942807 CTTAAACCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.23
Consensus pattern (19 bp):
AAACCTTAAACCATTATTA
Found at i:7942798 original size:19 final size:19
Alignment explanation
Indices: 7942733--7942805 Score: 60
Period size: 20 Copynumber: 3.8 Consensus size: 19
7942723 AACCCTAAAT
*
7942733 TTCAAACCTTAAATCACCTA
1 TTCAAACCTTAAACCA-CTA
* * *
7942753 --GAAACCCTAAACCATTA
1 TTCAAACCTTAAACCACTA
*
7942770 TTGAAAACCTTAAACCACTA
1 TT-CAAACCTTAAACCACTA
*
7942790 TTCAAACCTAAAACCA
1 TTCAAACCTTAAACCA
7942806 TCTTAAACCC
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
17 2 0.05
18 11 0.27
19 12 0.29
20 16 0.39
ACGTcount: A:0.45, C:0.29, G:0.03, T:0.23
Consensus pattern (19 bp):
TTCAAACCTTAAACCACTA
Found at i:7942878 original size:18 final size:19
Alignment explanation
Indices: 7942837--7942871 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
7942827 TAAAATCCCA
7942837 AACCACCCATGAAACCCTG
1 AACCACCCATGAAACCCTG
7942856 AACCA-CCAT-AAACCCT
1 AACCACCCATGAAACCCT
7942872 ATAACCAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 4 0.25
19 5 0.31
ACGTcount: A:0.40, C:0.43, G:0.06, T:0.11
Consensus pattern (19 bp):
AACCACCCATGAAACCCTG
Found at i:7944615 original size:16 final size:16
Alignment explanation
Indices: 7944596--7944626 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7944586 AAAAAAAAAA
7944596 AAAAAAAAATTCTTTC
1 AAAAAAAAATTCTTTC
*
7944612 AAAAAAAATTTCTTT
1 AAAAAAAAATTCTTT
7944627 TGACATATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAAAAAAATTCTTTC
Found at i:7944619 original size:1 final size:1
Alignment explanation
Indices: 7944580--7944604 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
7944570 TAAAATTTTG
7944580 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
7944605 TTCTTTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7944796 original size:14 final size:13
Alignment explanation
Indices: 7944777--7944807 Score: 53
Period size: 13 Copynumber: 2.3 Consensus size: 13
7944767 TTGGTTAAGT
7944777 AAAAATGAGAAAAA
1 AAAAATGA-AAAAA
7944791 AAAAATGAAAAAA
1 AAAAATGAAAAAA
7944804 AAAA
1 AAAA
7944808 GCTTTTGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.84, C:0.00, G:0.10, T:0.06
Consensus pattern (13 bp):
AAAAATGAAAAAA
Found at i:7949401 original size:17 final size:16
Alignment explanation
Indices: 7949381--7949432 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 16
7949371 AAGAGGCATG
7949381 AAAAGAAAAGAAAAGAA
1 AAAAGAAAA-AAAAGAA
7949398 AAAAGAAAAATAAATG-A
1 AAAAGAAAAA-AAA-GAA
7949415 AAAAGCAAAAAAAAGAA
1 AAAAG-AAAAAAAAGAA
7949432 A
1 A
7949433 GAAAAATGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 2 0.06
17 23 0.74
18 6 0.19
ACGTcount: A:0.81, C:0.02, G:0.13, T:0.04
Consensus pattern (16 bp):
AAAAGAAAAAAAAGAA
Found at i:7949437 original size:31 final size:30
Alignment explanation
Indices: 7949378--7949469 Score: 91
Period size: 31 Copynumber: 3.0 Consensus size: 30
7949368 GGTAAGAGGC
*
7949378 ATGAAA-AGAAAAGAAAAGAAA-AAAGAAAA
1 ATGAAACA-AAAAGAAAAAAAAGAAAGAAAA
*
7949407 AT-AAATGAAAAAGCAAAAAAAAGAAAGAAAA
1 ATGAAA-CAAAAAG-AAAAAAAAGAAAGAAAA
* *
7949438 ATGGAACAAAATGAAATAAAAAGAAAGAAAA
1 ATGAAACAAAAAGAAA-AAAAAGAAAGAAAA
7949469 A
1 A
7949470 GGAGAAAGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
28 3 0.06
29 7 0.13
30 11 0.21
31 30 0.57
32 2 0.04
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.07
Consensus pattern (30 bp):
ATGAAACAAAAAGAAAAAAAAGAAAGAAAA
Found at i:7949438 original size:10 final size:10
Alignment explanation
Indices: 7949382--7949470 Score: 69
Period size: 10 Copynumber: 9.0 Consensus size: 10
7949372 AGAGGCATGA
7949382 AAAG-AAAAG
1 AAAGAAAAAG
*
7949391 AAA-AGAAA-
1 AAAGAAAAAG
*
7949399 AAAGAAAAAT
1 AAAGAAAAAG
7949409 AAATGAAAAAG
1 AAA-GAAAAAG
7949420 CAAA-AAAAAG
1 -AAAGAAAAAG
7949430 AAAGAAAAATG
1 AAAGAAAAA-G
* * *
7949441 GAACAAAATG
1 AAAGAAAAAG
*
7949451 AAATAAAAAG
1 AAAGAAAAAG
7949461 AAAGAAAAAG
1 AAAGAAAAAG
7949471 GAGAAAGAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
8 3 0.05
9 13 0.21
10 31 0.49
11 13 0.21
12 3 0.05
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.06
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:7949469 original size:21 final size:20
Alignment explanation
Indices: 7949403--7949469 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 20
7949393 AAGAAAAAAG
7949403 AAAAAT-AAATGAAAAAGCAAA
1 AAAAATGAAAT-AAAAAG-AAA
* *
7949424 AAAAA-GAAAGAAAAATGGAA
1 AAAAATGAAATAAAAA-GAAA
*
7949444 CAAAATGAAATAAAAAGAAA
1 AAAAATGAAATAAAAAGAAA
7949464 GAAAAA
1 -AAAAA
7949470 GGAGAAAGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
20 14 0.39
21 22 0.61
ACGTcount: A:0.76, C:0.03, G:0.13, T:0.07
Consensus pattern (20 bp):
AAAAATGAAATAAAAAGAAA
Found at i:7949930 original size:24 final size:23
Alignment explanation
Indices: 7949903--7949952 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
7949893 AAGGGAAAAG
*
7949903 AAAAACGA-AAGAAAAGAGTAAATA
1 AAAAAAGAGAAGAAAA-AG-AAATA
7949927 AAAAAAGAGGAAGAAAAAGAAATA
1 AAAAAAGA-GAAGAAAAAGAAATA
7949951 AA
1 AA
7949953 TGATTGAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 14 0.61
25 2 0.09
26 7 0.30
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.06
Consensus pattern (23 bp):
AAAAAAGAGAAGAAAAAGAAATA
Found at i:7951524 original size:25 final size:25
Alignment explanation
Indices: 7951495--7951559 Score: 130
Period size: 25 Copynumber: 2.6 Consensus size: 25
7951485 ACATTCGCAT
7951495 TTGCATATTTGCATAGAGCATTTAC
1 TTGCATATTTGCATAGAGCATTTAC
7951520 TTGCATATTTGCATAGAGCATTTAC
1 TTGCATATTTGCATAGAGCATTTAC
7951545 TTGCATATTTGCATA
1 TTGCATATTTGCATA
7951560 CAGAAAAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (25 bp):
TTGCATATTTGCATAGAGCATTTAC
Found at i:7951930 original size:41 final size:40
Alignment explanation
Indices: 7951878--7952066 Score: 136
Period size: 40 Copynumber: 4.7 Consensus size: 40
7951868 TTTCAGGACT
* *
7951878 TTTAGGAAAAATTTTCAAGTTTTTGAAAAAATTTCAAAACC
1 TTTAGGTAAAATTTT-AAATTTTTGAAAAAATTTCAAAACC
* ** *
7951919 TTTAGGTAAAATCTTAAATTTTTG-AATGATTTCTAAGACC
1 TTTAGGTAAAATTTTAAATTTTTGAAAAAATTTC-AAAACC
* * *
7951959 TTTAGGTGAAATTTTAAAATTTTGAAAAAATGTCAAGAA-C
1 TTTAGGTAAAATTTTAAATTTTTGAAAAAATTTCAA-AACC
* * * * *
7951999 TTCTA-GCAAAACTTTAAATTTTT-AAATGATTTTCAAGACC
1 TT-TAGGTAAAATTTTAAATTTTTGAAA-AAATTTCAAAACC
** * *
7952039 TCCAAGCAAAATTTTAAATTTTT-AAAAA
1 TTTAGGTAAAATTTTAAATTTTTGAAAAA
7952067 GGCCTCCAAG
Statistics
Matches: 116, Mismatches: 25, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
39 13 0.11
40 81 0.70
41 22 0.19
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (40 bp):
TTTAGGTAAAATTTTAAATTTTTGAAAAAATTTCAAAACC
Found at i:7952051 original size:80 final size:79
Alignment explanation
Indices: 7951898--7952066 Score: 184
Period size: 80 Copynumber: 2.1 Consensus size: 79
7951888 ATTTTCAAGT
* * * **
7951898 TTTTGAAAAAATTTCAAAACCTTTAGGTAAAATCTTAAATTTTTGAATGATTTCTAAGACCTTTA
1 TTTTGAAAAAATGTCAAAACCTTTAGGCAAAATCTTAAATTTTTAAATGATTTCTAAGACCTCCA
* **
7951963 GGTGAAATTTTAAAA
66 AGCAAAATTTT-AAA
7951978 TTTTGAAAAAATGTCAAGAA-CTTCTA-GCAAAA-CTTTAAATTTTTAAATGATTT-TCAAGACC
1 TTTTGAAAAAATGTCAA-AACCTT-TAGGCAAAATC-TTAAATTTTTAAATGATTTCT-AAGACC
7952039 TCCAAGCAAAATTTTAAA
62 TCCAAGCAAAATTTTAAA
*
7952057 TTTTTAAAAA
1 TTTTGAAAAA
7952067 GGCCTCCAAG
Statistics
Matches: 76, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
79 14 0.18
80 58 0.76
81 4 0.05
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (79 bp):
TTTTGAAAAAATGTCAAAACCTTTAGGCAAAATCTTAAATTTTTAAATGATTTCTAAGACCTCCA
AGCAAAATTTTAAA
Found at i:7952118 original size:40 final size:40
Alignment explanation
Indices: 7952073--7952184 Score: 102
Period size: 40 Copynumber: 2.8 Consensus size: 40
7952063 AAAAGGCCTC
* *
7952073 CAAGTAAAACCTTAGATTTTTTAATGATTTTTTAGG-CTTT
1 CAAGTAAAACCTTAGATTTTTAAATGATTTTTAAGGTC-TT
* ** * *
7952113 CAAGTAGAATTTTA-AATTTTAGAATGATTTATAAGGTCTT
1 CAAGTAAAACCTTAGATTTTTA-AATGATTTTTAAGGTCTT
* * *
7952153 CAGGCATAACCTTAGATTTTTAAATGATTTTT
1 CAAGTAAAACCTTAGATTTTTAAATGATTTTT
7952185 GAAACTTTCG
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
39 5 0.09
40 43 0.78
41 7 0.13
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (40 bp):
CAAGTAAAACCTTAGATTTTTAAATGATTTTTAAGGTCTT
Found at i:7952471 original size:14 final size:14
Alignment explanation
Indices: 7952463--7952502 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 14
7952453 AATATTATTT
7952463 TTTAAATATAAATA
1 TTTAAATATAAATA
7952477 TTTAAATATATAATTA
1 TTTAAATATA-AA-TA
*
7952493 TATAAATATA
1 TTTAAATATA
7952503 TAAATAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.43
15 2 0.09
16 11 0.48
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TTTAAATATAAATA
Found at i:7952484 original size:8 final size:8
Alignment explanation
Indices: 7952468--7952508 Score: 64
Period size: 8 Copynumber: 5.1 Consensus size: 8
7952458 TATTTTTTAA
7952468 ATATAAAT
1 ATATAAAT
*
7952476 ATTTAAAT
1 ATATAAAT
*
7952484 ATATAATT
1 ATATAAAT
7952492 ATATAAAT
1 ATATAAAT
7952500 ATATAAAT
1 ATATAAAT
7952508 A
1 A
7952509 AAAAATTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATATAAAT
Found at i:7952495 original size:24 final size:24
Alignment explanation
Indices: 7952468--7952517 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
7952458 TATTTTTTAA
* * *
7952468 ATATAAATATTTAAATATATAATT
1 ATATAAATATATAAATAAAAAATT
7952492 ATATAAATATATAAATAAAAAATT
1 ATATAAATATATAAATAAAAAATT
7952516 AT
1 AT
7952518 TTTAAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
ATATAAATATATAAATAAAAAATT
Found at i:7952964 original size:83 final size:83
Alignment explanation
Indices: 7952683--7952964 Score: 293
Period size: 83 Copynumber: 3.4 Consensus size: 83
7952673 TTTTAGTATC
* * *
7952683 GAGACTTATAAGACCTTTAGGCATAGTATCTAAGTCCTCC-AGACAAAATTCATAA-TTCTTTCG
1 GAGACTTATAAGACCTTTAGGAATAGTATCTAAGTCCTCCAAG-TAAGATTCATAAGTTCTTT-G
*
7952746 AGCTGAATCTATTTTAAGTT
64 AGCTGAATCTATTTTAGGTT
* * * * * * * * * * * *
7952766 GAGACTTATGAGACCTCTAAGCATAGTCTTTAAGTCTTCCAGGTAAGATTTATAGGTTTTTTAAG
1 GAGACTTATAAGACCTTTAGGAATAGTATCTAAGTCCTCCAAGTAAGATTCATAAGTTCTTTGAG
7952831 CTGAATCTATTTTAGGTT
66 CTGAATCTATTTTAGGTT
* * * *
7952849 GAGATTTGTGAGACCTTTAGGCAA-AGTCTCTAAGTCCTCCAAGTAAGATTCATAAGTTCTTTGA
1 GAGACTTATAAGACCTTTAGG-AATAGTATCTAAGTCCTCCAAGTAAGATTCATAAGTTCTTTGA
* *
7952913 GTTGAATCTGTTTTAGGTT
65 GCTGAATCTATTTTAGGTT
*
7952932 GAGACTTATAAGA-CTTTTGAGAATAGTATCTAA
1 GAGACTTATAAGACCTTTAG-GAATAGTATCTAA
7952965 CTCTTCTAAC
Statistics
Matches: 161, Mismatches: 33, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
82 7 0.04
83 147 0.91
84 7 0.04
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (83 bp):
GAGACTTATAAGACCTTTAGGAATAGTATCTAAGTCCTCCAAGTAAGATTCATAAGTTCTTTGAG
CTGAATCTATTTTAGGTT
Found at i:7953000 original size:166 final size:167
Alignment explanation
Indices: 7952691--7953065 Score: 373
Period size: 166 Copynumber: 2.2 Consensus size: 167
7952681 TCGAGACTTA
*
7952691 TAAGACCTTTAGGCATAGTATCTAAGTCCTCCAGACAAAATTCATAATTCTTTCGAGCTGAATCT
1 TAAGACCTTTAGGCAAAGTATCTAAGTCCTCCAGACAAAATTCATAATTCTTTCGAGCTGAATCT
* * * * * *** * *
7952756 ATTTTAAGTTGAGACTTATGAGACCTCTAAGCATAGTCTTTAAGTCTTCCAGGTAAGATTTATAG
66 ATTTTAAGTTGAGACTTATAAGACCTCTAAGAATAGTATCTAACTCTTCCAACCAAGATTCATAA
* * ** *
7952821 GTTTTTTAAGCTGAATCTATTTTAGGT-TGAGATTTG
131 ATATTCCAAGCTGAATCTATTTTAGGTAAGAGATTTG
* * * * *
7952857 TGAGACCTTTAGGCAAAGTCTCTAAGTCCTCCA-AGTAAGATTCATAAGTTCTTT-GAGTTGAAT
1 TAAGACCTTTAGGCAAAGTATCTAAGTCCTCCAGA-CAAAATTCATAA-TTCTTTCGAGCTGAAT
* * * * * * *
7952920 CTGTTTTAGGTTGAGACTTATAAGACTTTTGAGAATAGTATCTAACTCTTCTAACCAAGATTCGT
64 CTATTTTAAGTTGAGACTTATAAGACCTCTAAGAATAGTATCTAACTCTTCCAACCAAGATTCAT
* *
7952985 AAATATTCCAAGCTGAATTTGTTTTAGGTACAGAGATTTG
129 AAATATTCCAAGCTGAATCTATTTTAGGTA-AGAGATTTG
** *
7953025 TAAGACCTCCAGGCATAA-TTTCTAAGTCCTCC-GAGCAAAAT
1 TAAGACCTTTAGGCA-AAGTATCTAAGTCCTCCAGA-CAAAAT
7953066 GCTGTAAATT
Statistics
Matches: 167, Mismatches: 36, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
165 1 0.01
166 119 0.71
167 6 0.04
168 39 0.23
169 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (167 bp):
TAAGACCTTTAGGCAAAGTATCTAAGTCCTCCAGACAAAATTCATAATTCTTTCGAGCTGAATCT
ATTTTAAGTTGAGACTTATAAGACCTCTAAGAATAGTATCTAACTCTTCCAACCAAGATTCATAA
ATATTCCAAGCTGAATCTATTTTAGGTAAGAGATTTG
Found at i:7955117 original size:27 final size:27
Alignment explanation
Indices: 7955078--7955138 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
7955068 CTTAATCTAG
*
7955078 CTCTAAATAGCCCATATCGAGTTTTCA
1 CTCTAGATAGCCCATATCGAGTTTTCA
* * *
7955105 CTCTAGATTGCCCATTTTGAGTTTTCA
1 CTCTAGATAGCCCATATCGAGTTTTCA
*
7955132 CCCTAGA
1 CTCTAGA
7955139 GCTTCATTCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (27 bp):
CTCTAGATAGCCCATATCGAGTTTTCA
Found at i:7955457 original size:23 final size:25
Alignment explanation
Indices: 7955426--7955474 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
7955416 ATGTTTTTCA
7955426 TCTTATCATTT-TTT-TTTCTTTTT
1 TCTTATCATTTCTTTGTTTCTTTTT
* *
7955449 TCTTTTCATTTCTTTGTTTTTTTTT
1 TCTTATCATTTCTTTGTTTCTTTTT
7955474 T
1 T
7955475 TCTTGCATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 10 0.45
24 3 0.14
25 9 0.41
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.80
Consensus pattern (25 bp):
TCTTATCATTTCTTTGTTTCTTTTT
Found at i:7956949 original size:60 final size:61
Alignment explanation
Indices: 7956880--7957172 Score: 361
Period size: 60 Copynumber: 4.9 Consensus size: 61
7956870 AAATGAAAGT
* *
7956880 TTTTA-TTTTAAGGAAAATTGATACTTTCAACTTTTCCT-TAACATAT-TTTTCTTTGAAAA
1 TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATATATTTT-TTTGAAAA
* * *
7956939 TTTTATTTTTAAGGAAAATTGATATTTTCAAC-TTCCCTAAAAAATATATTTTTTTGAAAT
1 TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATATATTTTTTTGAAAA
* * * *
7956999 TTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATATTTTTTTGAAAT
1 TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATATATTTTTTTGAAAA
* * *
7957060 TTTTATTTTTAA-GAAATTTGATACTTTCAACTTATCCTCAAAAAATAT-TTTTTTTTAAAA
1 TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCT-AAAAAATATATTTTTTTGAAAA
* * *
7957120 TTTTATTTTCAAGG-AAATTGATACTTTTAA-TTTTCCCTCAAAAATAT-TTTTTT
1 TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTT-CCTAAAAAATATATTTTTT
7957173 ATTTTAGGAA
Statistics
Matches: 205, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
59 27 0.13
60 128 0.62
61 50 0.24
ACGTcount: A:0.34, C:0.10, G:0.05, T:0.51
Consensus pattern (61 bp):
TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATATATTTTTTTGAAAA
Found at i:7958004 original size:17 final size:17
Alignment explanation
Indices: 7957982--7958019 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
7957972 CAAAATTCAG
7957982 AATAGATAAATAAAAAA
1 AATAGATAAATAAAAAA
*
7957999 AATAGATAAATATAAAA
1 AATAGATAAATAAAAAA
7958016 AATA
1 AATA
7958020 TACATTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (17 bp):
AATAGATAAATAAAAAA
Found at i:7958034 original size:27 final size:28
Alignment explanation
Indices: 7957999--7958103 Score: 117
Period size: 27 Copynumber: 3.8 Consensus size: 28
7957989 AAATAAAAAA
*
7957999 AATAGATAAAT-ATAAAAAATATACATT
1 AATAGATAAATAATAAAAAATATATATT
*
7958026 AATATATAAATAATAAAAAATA-ATATT
1 AATAGATAAATAATAAAAAATATATATT
* *
7958053 AATGGATAACTAAT-AAAAATATATATT
1 AATAGATAAATAATAAAAAATATATATT
* *
7958080 ATTAGATAAAAAAATATAAAAATA
1 AATAGAT-AAATAATA-AAAAATA
7958104 ATAAAAATAA
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.11
27 35 0.55
28 15 0.23
30 7 0.11
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (28 bp):
AATAGATAAATAATAAAAAATATATATT
Found at i:7958035 original size:21 final size:19
Alignment explanation
Indices: 7957987--7958031 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
7957977 TTCAGAATAG
*
7957987 ATAAATA-AAAAAA-ATAG
1 ATAAATATAAAAAATATAC
7958004 ATAAATATAAAAAATATAC
1 ATAAATATAAAAAATATAC
*
7958023 ATTAATATA
1 ATAAATATA
7958032 TAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 7 0.29
18 6 0.25
19 11 0.46
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (19 bp):
ATAAATATAAAAAATATAC
Found at i:7958275 original size:10 final size:10
Alignment explanation
Indices: 7958260--7958301 Score: 66
Period size: 10 Copynumber: 4.2 Consensus size: 10
7958250 TCAACTAAAT
*
7958260 TTTTTTTTTC
1 TTTTTTTTTG
7958270 TTTTTTTTTG
1 TTTTTTTTTG
*
7958280 TTTTGTTTTG
1 TTTTTTTTTG
7958290 TTTTTTTTTG
1 TTTTTTTTTG
7958300 TT
1 TT
7958302 AAAATTTTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:7958430 original size:42 final size:40
Alignment explanation
Indices: 7958317--7958446 Score: 122
Period size: 43 Copynumber: 3.1 Consensus size: 40
7958307 TTTGATCAAA
* * *
7958317 GCTCCTCTAAACAAAGGCTCAACGACTTTGGAAAATAAATAAA
1 GCTCTTCTAAACAAAGGCTC-ACAACTTTGGAAAATAAAT--T
* *
7958360 GCTTTTTTAAACAAAGGCTCA-ATGACTTTGGAAAAGTAAATT
1 GCTCTTCTAAACAAAGGCTCACA--ACTTTGGAAAA-TAAATT
*
7958402 GCTCTTCTAAACAAAGGCATCACAACTTT-GAACATAAA-T
1 GCTCTTCTAAACAAAGGC-TCACAACTTTGGAAAATAAATT
7958441 GCTCTT
1 GCTCTT
7958447 TAACAATCAT
Statistics
Matches: 74, Mismatches: 8, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
39 7 0.09
40 4 0.05
41 4 0.05
42 22 0.30
43 31 0.42
44 6 0.08
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (40 bp):
GCTCTTCTAAACAAAGGCTCACAACTTTGGAAAATAAATT
Found at i:7959489 original size:9 final size:9
Alignment explanation
Indices: 7959434--7959472 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
7959424 TTCATTCACT
*
7959434 TTTTTTTCT
1 TTTTTTTCA
*
7959443 TTTTTTTTA
1 TTTTTTTCA
7959452 TTTTTTTCA
1 TTTTTTTCA
*
7959461 ATTTTTTCA
1 TTTTTTTCA
7959470 TTT
1 TTT
7959473 CATTTTTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.10, C:0.08, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:7970005 original size:57 final size:61
Alignment explanation
Indices: 7969869--7970017 Score: 195
Period size: 57 Copynumber: 2.5 Consensus size: 61
7969859 AAAATGGAAG
*
7969869 TTTTTA-TTTTAAGAAAAATTGATACTTTCAA--TCTTTCCTTAAAATATTTTTCTTTGAAA
1 TTTTTATTTTTAAG-AAAATTGATACTTTCAACTTCTTTCCTAAAAATATTTTTCTTTGAAA
* * *
7969928 ATTTTATTTTTAAGAAAATTGATATTTTCAACTTTTTTCC-AAAAATA-TTTT-TTTG-AA
1 TTTTTATTTTTAAGAAAATTGATACTTTCAACTTCTTTCCTAAAAATATTTTTCTTTGAAA
*
7969985 TTTTTATTTTTCAGAAAATTGATACTTTCAACT
1 TTTTTATTTTTAAGAAAATTGATACTTTCAACT
7970018 ACCTCCCTTC
Statistics
Matches: 80, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
57 32 0.40
58 4 0.05
59 25 0.31
60 13 0.16
61 6 0.08
ACGTcount: A:0.34, C:0.09, G:0.05, T:0.52
Consensus pattern (61 bp):
TTTTTATTTTTAAGAAAATTGATACTTTCAACTTCTTTCCTAAAAATATTTTTCTTTGAAA
Found at i:7970518 original size:10 final size:11
Alignment explanation
Indices: 7970503--7970577 Score: 54
Period size: 10 Copynumber: 7.3 Consensus size: 11
7970493 TTCAGAACAG
7970503 ATAAATAAA-A
1 ATAAATAAATA
7970513 ATAAATAAATA
1 ATAAATAAATA
*
7970524 AT-AATAGATA
1 ATAAATAAATA
*
7970534 A-ATATAAA-A
1 ATAAATAAATA
* *
7970543 A-ATATACATTA
1 ATAAATA-AATA
*
7970554 ATAGATAAATA
1 ATAAATAAATA
7970565 ATAAA-AAATA
1 ATAAATAAATA
7970575 ATA
1 ATA
7970578 TTAATGGATA
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
9 7 0.13
10 30 0.57
11 12 0.23
12 4 0.08
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (11 bp):
ATAAATAAATA
Found at i:7970522 original size:14 final size:14
Alignment explanation
Indices: 7970503--7970546 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
7970493 TTCAGAACAG
7970503 ATAAATAAAAATAA
1 ATAAATAAAAATAA
* *
7970517 ATAAATAATAATAG
1 ATAAATAAAAATAA
*
7970531 ATAAATATAAA-AA
1 ATAAATAAAAATAA
7970544 ATA
1 ATA
7970547 TACATTAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
13 4 0.16
14 21 0.84
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (14 bp):
ATAAATAAAAATAA
Found at i:7970610 original size:30 final size:28
Alignment explanation
Indices: 7970501--7970616 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 28
7970491 AATTCAGAAC
* *
7970501 AGATAAATAA-AAATAAATAAATAATAAT
1 AGATAAATAATAAA-AAATATATATTAAT
*
7970529 AGATAAAT-ATAAAAAATATACATTAAT
1 AGATAAATAATAAAAAATATATATTAAT
7970556 AGATAAATAATAAAAAATA-ATATTAAT
1 AGATAAATAATAAAAAATATATATTAAT
* * *
7970583 GGATAACTAAT-AAAAATATATATTATT
1 AGATAAATAATAAAAAATATATATTAAT
7970610 AGATAAA
1 AGATAAA
7970617 AAAATATATA
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
26 7 0.09
27 48 0.63
28 21 0.28
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (28 bp):
AGATAAATAATAAAAAATATATATTAAT
Found at i:7970613 original size:54 final size:55
Alignment explanation
Indices: 7970501--7970648 Score: 155
Period size: 54 Copynumber: 2.8 Consensus size: 55
7970491 AATTCAGAAC
7970501 AGATAAATAAAAATAAATAAATAATAATAGATAAATATAAAAAATATACATTAAT
1 AGATAAATAAAAATAAATAAATAATAATAGATAAATATAAAAAATATACATTAAT
* * * * *
7970556 AGATAAATAATAAA-AAAT-AATATTAATGGATAACTA-ATAAAAATATATATTATT
1 AGATAAATAA-AAATAAATAAATAATAATAGATAAATATA-AAAAATATACATTAAT
* * * *
7970610 AGAT-AA-AAAAATATATAAAAAATAA-AAATAAAAATAAAA
1 AGATAAATAAAAATAAATAAATAATAATAGATAAATATAAAA
7970649 TATGCCATCT
Statistics
Matches: 76, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
51 3 0.04
52 13 0.17
53 10 0.13
54 33 0.43
55 14 0.18
56 3 0.04
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (55 bp):
AGATAAATAAAAATAAATAAATAATAATAGATAAATATAAAAAATATACATTAAT
Found at i:7971716 original size:22 final size:22
Alignment explanation
Indices: 7971667--7971716 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
7971657 AAAGTCTTAC
7971667 ATTTTTTTTGAAGTAAAAGACT
1 ATTTTTTTTGAAGTAAAAGACT
*
7971689 -TATTTTCTTGAAAG-AAAA-ACT
1 AT-TTTTTTTG-AAGTAAAAGACT
7971710 ATTTTTT
1 ATTTTTT
7971717 ACAAAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 7
0.72 0.06 0.22
Matches are distributed among these distances:
21 8 0.35
22 12 0.52
23 3 0.13
ACGTcount: A:0.36, C:0.06, G:0.10, T:0.48
Consensus pattern (22 bp):
ATTTTTTTTGAAGTAAAAGACT
Found at i:7972072 original size:38 final size:38
Alignment explanation
Indices: 7972021--7972099 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 38
7972011 TCACGAGAGT
*
7972021 GTAAGTACCTTGCTTCTTTTAAGAAGGATGAAGCTCGA
1 GTAAGTACCTTGCTTCTTTTAAGAAAGATGAAGCTCGA
*
7972059 GTAAGTACTTTGCTTCTTTTAAGAAAGATGAAGCTCGA
1 GTAAGTACCTTGCTTCTTTTAAGAAAGATGAAGCTCGA
7972097 GTA
1 GTA
7972100 TAGAGCTCAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (38 bp):
GTAAGTACCTTGCTTCTTTTAAGAAAGATGAAGCTCGA
Found at i:7974884 original size:6 final size:5
Alignment explanation
Indices: 7974877--7974967 Score: 60
Period size: 6 Copynumber: 16.8 Consensus size: 5
7974867 TAAAGAATAG
* *
7974877 ATAAA GATAAA A-AAT ATAAA GATAAA AT-AA ATAAA ATGAA ATAAA TATAAAA
1 ATAAA -ATAAA ATAAA ATAAA -ATAAA ATAAA ATAAA ATAAA ATAAA -AT-AAA
*
7974929 ATAAAA ATAATG ATAAA ATAAAA TATAAA ATAATA ATAA
1 AT-AAA ATAA-A ATAAA AT-AAA -ATAAA ATAA-A ATAA
7974968 TGGTAAATGT
Statistics
Matches: 70, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
4 7 0.10
5 23 0.33
6 35 0.50
7 5 0.07
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (5 bp):
ATAAA
Found at i:7974897 original size:15 final size:15
Alignment explanation
Indices: 7974877--7974935 Score: 68
Period size: 15 Copynumber: 3.9 Consensus size: 15
7974867 TAAAGAATAG
7974877 ATAAAGATAAAAAAT
1 ATAAAGATAAAAAAT
7974892 ATAAAGATAAAATAA-
1 ATAAAGATAAAA-AAT
7974907 ATAAA-ATGAAATAAAT
1 ATAAAGAT-AAA-AAAT
*
7974923 ATAAAAATAAAAA
1 ATAAAGATAAAAA
7974936 TAATGATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
14 2 0.05
15 24 0.62
16 11 0.28
17 2 0.05
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (15 bp):
ATAAAGATAAAAAAT
Found at i:7974898 original size:46 final size:46
Alignment explanation
Indices: 7974830--7974953 Score: 114
Period size: 46 Copynumber: 2.7 Consensus size: 46
7974820 TATTCTAGAT
** *
7974830 AAGA-AAAAATAAATTA-ATAAAGAT-AATTAAATGAAAAT-AAAGA
1 AAGATAAAAATAAAAAATATAAAGATAAAATAAAT-AAAATGAAAGA
* *
7974873 ATAGATAAAGATAAAAAATATAAAGATAAAATAAATAAAATGAAATA
1 A-AGATAAAAATAAAAAATATAAAGATAAAATAAATAAAATGAAAGA
*
7974920 AATATAAAAATAAAAATAATGATAAA-ATAAAATA
1 AAGATAAAAAT-AAAA-AAT-ATAAAGATAAAATA
7974954 TAAAATAATA
Statistics
Matches: 66, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.02
44 3 0.05
45 9 0.14
46 21 0.32
47 16 0.24
48 11 0.17
49 5 0.08
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (46 bp):
AAGATAAAAATAAAAAATATAAAGATAAAATAAATAAAATGAAAGA
Found at i:7974908 original size:17 final size:16
Alignment explanation
Indices: 7974888--7974967 Score: 67
Period size: 17 Copynumber: 4.8 Consensus size: 16
7974878 TAAAGATAAA
7974888 AAATATAAAGATAAAAT
1 AAATATAAA-ATAAAAT
*
7974905 -AA-ATAAAATGAAAT
1 AAATATAAAATAAAAT
7974919 AAATATAAAAATAAAA-
1 AAATAT-AAAATAAAAT
7974935 ATAATGATAAAATAAAAT
1 A-AAT-ATAAAATAAAAT
*
7974953 ATAAAATAATAATAA
1 A-AATATAA-AATAA
7974968 TGGTAAATGT
Statistics
Matches: 53, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
14 6 0.11
15 7 0.13
16 5 0.09
17 24 0.45
18 11 0.21
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (16 bp):
AAATATAAAATAAAAT
Found at i:7974948 original size:11 final size:10
Alignment explanation
Indices: 7974883--7974963 Score: 55
Period size: 9 Copynumber: 8.1 Consensus size: 10
7974873 ATAGATAAAG
7974883 ATAAAA-AAT
1 ATAAAATAAT
*
7974892 ATAAAGATAAA
1 ATAAA-ATAAT
*
7974903 AT-AAATAAA
1 ATAAAATAAT
*
7974912 ATGAAATAA-
1 ATAAAATAAT
7974921 ATATAAA-AAT
1 ATA-AAATAAT
7974931 A-AAAATAAT
1 ATAAAATAAT
7974940 GATAAAATAAAAT
1 -ATAAAAT--AAT
7974953 ATAAAATAAT
1 ATAAAATAAT
7974963 A
1 A
7974964 ATAATGGTAA
Statistics
Matches: 60, Mismatches: 2, Indels: 19
0.74 0.02 0.23
Matches are distributed among these distances:
8 3 0.05
9 20 0.33
10 18 0.30
11 9 0.15
12 7 0.12
13 3 0.05
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (10 bp):
ATAAAATAAT
Found at i:7974949 original size:23 final size:22
Alignment explanation
Indices: 7974875--7974967 Score: 75
Period size: 23 Copynumber: 4.0 Consensus size: 22
7974865 AATAAAGAAT
7974875 AGATAAAGAT-AAAAAAT-ATAA
1 AGATAAA-ATAAAAAAATGATAA
7974896 AGATAAAATAAATAAAATGAAATAA
1 AGATAAAATAAA-AAAATG--ATAA
*
7974921 ATATAAAAATAAAAATAATGATAA
1 AGAT-AAAATAAAAA-AATGATAA
*
7974945 A-ATAAAATATAAAATAATAATAA
1 AGATAAAATA-AAAA-AATGATAA
7974968 TGGTAAATGT
Statistics
Matches: 62, Mismatches: 2, Indels: 14
0.79 0.03 0.18
Matches are distributed among these distances:
20 2 0.03
21 9 0.15
22 11 0.18
23 14 0.23
24 5 0.08
25 9 0.15
26 12 0.19
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (22 bp):
AGATAAAATAAAAAAATGATAA
Found at i:7974958 original size:29 final size:28
Alignment explanation
Indices: 7974887--7974974 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 28
7974877 ATAAAGATAA
*
7974887 AAAATATAAAGATAAAATAAATAA-AATG-
1 AAAATA-AAATATAAAATAAA-AATAATGT
7974915 -AAAT-AAATATAAAAATAAAAATAATGAT
1 AAAATAAAATAT-AAAATAAAAATAATG-T
*
7974943 AAAATAAAATATAAAATAATAATAATGGT
1 AAAATAAAATATAAAATAAAAATAAT-GT
7974972 AAA
1 AAA
7974975 TGTAGAAACA
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
25 7 0.14
26 12 0.24
27 4 0.08
29 21 0.41
30 7 0.14
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (28 bp):
AAAATAAAATATAAAATAAAAATAATGT
Found at i:7975782 original size:30 final size:30
Alignment explanation
Indices: 7975738--7975803 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
7975728 TTGTGTTCCC
*
7975738 ATCCTTCTACTTTGGTTAAATGGTAAAATT
1 ATCCCTCTACTTTGGTTAAATGGTAAAATT
*
7975768 ATCCCTCTATTTTGGTTAAATGGTAAAATT
1 ATCCCTCTACTTTGGTTAAATGGTAAAATT
*
7975798 AACCCT
1 ATCCCT
7975804 TTACCTTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (30 bp):
ATCCCTCTACTTTGGTTAAATGGTAAAATT
Found at i:7978243 original size:5 final size:5
Alignment explanation
Indices: 7978233--7978275 Score: 61
Period size: 5 Copynumber: 8.8 Consensus size: 5
7978223 TGTACTTACC
* *
7978233 TTTTA TTTTA TTTTA TTTTA CTTTA TTTCA TTTTA -TTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
7978276 TTTATAAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 4 0.12
5 29 0.88
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:7978702 original size:12 final size:12
Alignment explanation
Indices: 7978685--7978710 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7978675 TCTTGACAAA
7978685 AATTAAAATAAT
1 AATTAAAATAAT
7978697 AATTAAAATAAT
1 AATTAAAATAAT
7978709 AA
1 AA
7978711 AGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AATTAAAATAAT
Found at i:7980420 original size:46 final size:46
Alignment explanation
Indices: 7980246--7980539 Score: 245
Period size: 46 Copynumber: 6.4 Consensus size: 46
7980236 CCTTAGAGAT
* * * * *
7980246 TTAACAAC-TTAGAAAATTAAATTGAAAGGCTCTTCTCATTAGAAGC
1 TTAACAACTTTA-AAAATCAAACTAAAAGGCTCCTCTCATTAGAGGC
* * * *
7980292 TCAATAACTTTAAAAAATCAAACTGAAAGGTTCCTCTCATTAGAGGC
1 TTAACAACTTT-AAAAATCAAACTAAAAGGCTCCTCTCATTAGAGGC
* * * *
7980339 TTGACAACTTT-AAAATCAAATTGAAAA-GCTTCTCTAATTAGAGGC
1 TTAACAACTTTAAAAATCAAACT-AAAAGGCTCCTCTCATTAGAGGC
* * *
7980384 TTAACAACTTTAAAAATCAAACTAAAAGGGTCCTCTAATTAAAGGC
1 TTAACAACTTTAAAAATCAAACTAAAAGGCTCCTCTCATTAGAGGC
* * * * * * *
7980430 TCAATAACTTTAAAAATCAAATTGAAAGACTTCTTTCATTAGAGGC
1 TTAACAACTTTAAAAATCAAACTAAAAGGCTCCTCTCATTAGAGGC
* * * * * * * *
7980476 TCATCTATTTTAAAAATCAATCTATAAGGCTCCACTCATTAGAGAC
1 TTAACAACTTTAAAAATCAAACTAAAAGGCTCCTCTCATTAGAGGC
7980522 -TAGACAACTTTAAAAATC
1 TTA-ACAACTTTAAAAATC
7980540 TCACTCAAAG
Statistics
Matches: 195, Mismatches: 47, Indels: 12
0.77 0.19 0.05
Matches are distributed among these distances:
45 40 0.21
46 115 0.59
47 39 0.20
48 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.30
Consensus pattern (46 bp):
TTAACAACTTTAAAAATCAAACTAAAAGGCTCCTCTCATTAGAGGC
Found at i:7980517 original size:138 final size:138
Alignment explanation
Indices: 7980238--7980539 Score: 314
Period size: 138 Copynumber: 2.2 Consensus size: 138
7980228 ACTTATCTCC
* * * * * *
7980238 TTAGAGATTTAACAAC-TTAGAAAATTAAATTGAAAGGCTCTTCTCATTAGAAGCTCAATAACTT
1 TTAGAGACTTAACAACTTTA-AAAATCAAACTAAAAGGCTCCTCTAATTAGAAGCTCAATAACTT
* *
7980302 TAAAAAATCAAACTGAAAGGTTCCTCTCATTAGAGGCTTGACAACTTTAAAATCAAATTGAAAAG
65 TAAAAAATCAAACTGAAAGCTTCCTCTCATTAGAGGCTTCACAACTTTAAAATCAAATTGAAAAG
* *
7980367 CTTCTCTAA
130 CTCCACTAA
* *
7980376 TTAGAGGCTTAACAACTTTAAAAATCAAACTAAAAGGGTCCTCTAATTA-AAGGCTCAATAACTT
1 TTAGAGACTTAACAACTTTAAAAATCAAACTAAAAGGCTCCTCTAATTAGAA-GCTCAATAACTT
* * * *
7980440 T-AAAAATCAAATTGAAAGACTT-CTTTCATTAGAGGC-TCATCTATTTTAAAAATC-AATCT-A
65 TAAAAAATCAAACTGAAAG-CTTCCTCTCATTAGAGGCTTCA-CAACTTT-AAAATCAAAT-TGA
* *
7980500 TAAGGCTCCACTCA
126 -AAAGCTCCACTAA
7980514 TTAGAGAC-TAGACAACTTTAAAAATC
1 TTAGAGACTTA-ACAACTTTAAAAATC
7980540 TCACTCAAAG
Statistics
Matches: 137, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
136 2 0.01
137 42 0.31
138 90 0.66
139 3 0.02
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (138 bp):
TTAGAGACTTAACAACTTTAAAAATCAAACTAAAAGGCTCCTCTAATTAGAAGCTCAATAACTTT
AAAAAATCAAACTGAAAGCTTCCTCTCATTAGAGGCTTCACAACTTTAAAATCAAATTGAAAAGC
TCCACTAA
Found at i:7980550 original size:92 final size:92
Alignment explanation
Indices: 7980249--7980539 Score: 299
Period size: 92 Copynumber: 3.2 Consensus size: 92
7980239 TAGAGATTTA
* * * *
7980249 ACAAC-TTAGAAAATTAAATTGAAAG-GC-TCTTCTCATTAGAAGCTCAATAACTTTAAAAAATC
1 ACAACTTTA-AAAATCAAATTGAAAGAGCTTC-TCTAATTAGAGGCTCAACAACTTT-AAAAATC
* *
7980311 AAACTGAAAGGTTCCTCTCATTAGAGGCTTG
63 AAACT-AAAGGCTCCTCTCATTAGAGGCTAG
*
7980342 ACAACTTT-AAAATCAAATTGAAA-AGCTTCTCTAATTAGAGGCTTAACAACTTTAAAAATCAAA
1 ACAACTTTAAAAATCAAATTGAAAGAGCTTCTCTAATTAGAGGCTCAACAACTTTAAAAATCAAA
* * *
7980405 CTAAAAGGGTCCTCTAATTAAAGGCTCA-
66 CT-AAAGGCTCCTCTCATTAGAGGCT-AG
* * * * * * *
7980433 ATAACTTTAAAAATCAAATTGAAAGA-CTTCTTTCATTAGAGGCTCATCTATTTTAAAAATCAAT
1 ACAACTTTAAAAATCAAATTGAAAGAGCTTCTCTAATTAGAGGCTCAACAACTTTAAAAATCAAA
* *
7980497 CTATAAGGCTCCACTCATTAGAGACTAG
66 CTA-AAGGCTCCTCTCATTAGAGGCTAG
7980525 ACAACTTTAAAAATC
1 ACAACTTTAAAAATC
7980540 TCACTCAAAG
Statistics
Matches: 166, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
91 41 0.25
92 115 0.69
93 8 0.05
94 2 0.01
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.30
Consensus pattern (92 bp):
ACAACTTTAAAAATCAAATTGAAAGAGCTTCTCTAATTAGAGGCTCAACAACTTTAAAAATCAAA
CTAAAGGCTCCTCTCATTAGAGGCTAG
Found at i:7981695 original size:13 final size:13
Alignment explanation
Indices: 7981677--7981837 Score: 55
Period size: 14 Copynumber: 11.8 Consensus size: 13
7981667 AGGGATAATG
7981677 TTAGGGTTTTGGT
1 TTAGGGTTTTGGT
*
7981690 TTAGGGTATAGGGTTAGGG
1 TTAGGGT-T----TT-GGT
7981709 TTAGGGTTTTAGGT
1 TTAGGGTTTT-GGT
*
7981723 TTA-GGTTTGGGGT
1 TTAGGGTTT-TGGT
*
7981736 TTAGGGTTTAGGGT
1 TTAGGGTTT-TGGT
* *
7981750 TTAGGGTATGGGCT
1 TTAGGGTTTTGG-T
* *
7981764 TT-GAGCTTTGGGT
1 TTAG-GGTTTTGGT
7981777 TT-GAGG-TTTGGT
1 TTAG-GGTTTTGGT
*
7981789 TTAGGG-TTTGAT
1 TTAGGGTTTTGGT
*
7981801 TTAGGAGTTTGGGGT
1 TTAGG-GTTT-TGGT
* *
7981816 TTATGG-TTTGAT
1 TTAGGGTTTTGGT
7981828 TTAGGGTTTT
1 TTAGGGTTTT
7981838 ATGAAAAATG
Statistics
Matches: 117, Mismatches: 16, Indels: 30
0.72 0.10 0.18
Matches are distributed among these distances:
12 26 0.22
13 35 0.30
14 38 0.32
15 6 0.05
18 3 0.03
19 9 0.08
ACGTcount: A:0.13, C:0.01, G:0.40, T:0.46
Consensus pattern (13 bp):
TTAGGGTTTTGGT
Found at i:7981701 original size:20 final size:20
Alignment explanation
Indices: 7981678--7981795 Score: 68
Period size: 20 Copynumber: 6.0 Consensus size: 20
7981668 GGGATAATGT
7981678 TAGGGTTTTGGTTTAGGGTA
1 TAGGGTTTTGGTTTAGGGTA
* * *
7981698 TAGGG-TTAGGGTTAGGGTTT
1 TAGGGTTTTGGTTTAGGG-TA
* * *
7981718 TA-GGTTTAGGTTTGGGGTT
1 TAGGGTTTTGGTTTAGGGTA
*
7981737 TAGGGTTTAGGGTTTAGGGTA
1 TAGGGTTT-TGGTTTAGGGTA
*
7981758 T-GGGCTTTGAGCTTT-GGGT-
1 TAGGGTTTTG-G-TTTAGGGTA
*
7981777 TTGAGG-TTTGGTTTAGGGT
1 TAG-GGTTTTGGTTTAGGGT
7981796 TTGATTTAGG
Statistics
Matches: 79, Mismatches: 10, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
18 3 0.04
19 23 0.29
20 38 0.48
21 15 0.19
ACGTcount: A:0.13, C:0.02, G:0.42, T:0.43
Consensus pattern (20 bp):
TAGGGTTTTGGTTTAGGGTA
Found at i:7981705 original size:26 final size:28
Alignment explanation
Indices: 7981637--7981756 Score: 110
Period size: 27 Copynumber: 4.5 Consensus size: 28
7981627 CTTGAGTTGA
* *
7981637 TTTAGGGTCTA-GGTTAGGGTTTATGGT
1 TTTAGGGTATAGGGTTAGGGTTTAGGGT
** *
7981664 TTTAGGG-ATAATGTTAGGGTTT-TGG-
1 TTTAGGGTATAGGGTTAGGGTTTAGGGT
7981689 TTTAGGGTATAGGGTTAGGG-TTAGGGT
1 TTTAGGGTATAGGGTTAGGGTTTAGGGT
* * *
7981716 TTTA-GGTTTAGGTTTGGGGTTTAGGG-
1 TTTAGGGTATAGGGTTAGGGTTTAGGGT
*
7981742 TTTAGGGTTTAGGGT
1 TTTAGGGTATAGGGT
7981757 ATGGGCTTTG
Statistics
Matches: 78, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
25 9 0.12
26 33 0.42
27 36 0.46
ACGTcount: A:0.16, C:0.01, G:0.40, T:0.43
Consensus pattern (28 bp):
TTTAGGGTATAGGGTTAGGGTTTAGGGT
Found at i:7981707 original size:6 final size:6
Alignment explanation
Indices: 7981676--7981756 Score: 54
Period size: 7 Copynumber: 12.3 Consensus size: 6
7981666 TAGGGATAAT
* * *
7981676 GTTAGG GTTTTGG TTTAGG GTATAGG GTTAGG GTTAGG GTTTTAGG TTTAGG
1 GTTAGG G-TTAGG GTTAGG GT-TAGG GTTAGG GTTAGG G--TTAGG GTTAGG
* *
7981728 TTTGGG GTTTAGG GTTTAGG GTTTAGG GT
1 GTTAGG G-TTAGG G-TTAGG G-TTAGG GT
7981757 ATGGGCTTTG
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
6 28 0.45
7 29 0.47
8 5 0.08
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (6 bp):
GTTAGG
Found at i:7981720 original size:14 final size:13
Alignment explanation
Indices: 7981676--7981756 Score: 76
Period size: 13 Copynumber: 6.2 Consensus size: 13
7981666 TAGGGATAAT
*
7981676 GTTAGGGTTTTGG
1 GTTAGGGTTTAGG
* *
7981689 TTTAGGGTATAGG
1 GTTAGGGTTTAGG
7981702 GTTAGGG-TTAGG
1 GTTAGGGTTTAGG
7981714 GTTTTA-GGTTTAGG
1 G--TTAGGGTTTAGG
* *
7981728 TTTGGGGTTTAGG
1 GTTAGGGTTTAGG
7981741 GTTTAGGGTTTAGG
1 G-TTAGGGTTTAGG
7981755 GT
1 GT
7981757 ATGGGCTTTG
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
12 7 0.13
13 27 0.50
14 20 0.37
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (13 bp):
GTTAGGGTTTAGG
Found at i:7981823 original size:27 final size:26
Alignment explanation
Indices: 7981722--7981836 Score: 87
Period size: 27 Copynumber: 4.4 Consensus size: 26
7981712 GGGTTTTAGG
*
7981722 TTTA-GGTTTGGGGTTTAGGGTTTAGGG
1 TTTAGGGTTTGGGGTTTAGGGTTT--GA
* * * *
7981749 TTTAGGGTATGGGCTTT-GAGCTTTGGG
1 TTTAGGGTTTGGGGTTTAG-GGTTT-GA
7981776 TTT-GAGGTTT--GGTTTAGGGTTTGA
1 TTTAG-GGTTTGGGGTTTAGGGTTTGA
*
7981800 TTTAGGAGTTTGGGGTTTATGGTTTGA
1 TTTAGG-GTTTGGGGTTTAGGGTTTGA
7981827 TTTAGGGTTT
1 TTTAGGGTTT
7981837 TATGAAAAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
24 5 0.07
25 13 0.18
26 6 0.08
27 34 0.47
28 14 0.19
ACGTcount: A:0.12, C:0.02, G:0.39, T:0.47
Consensus pattern (26 bp):
TTTAGGGTTTGGGGTTTAGGGTTTGA
Found at i:7982875 original size:20 final size:20
Alignment explanation
Indices: 7982849--7982896 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
7982839 AGTTTGTTCC
7982849 GATTTGAC-TTATTAAGACCA
1 GATTTGACTTTATT-AGACCA
* *
7982869 TATTTGACTTTATTTGACCA
1 GATTTGACTTTATTAGACCA
7982889 GATTTGAC
1 GATTTGAC
7982897 CAAGTTTAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.42
Consensus pattern (20 bp):
GATTTGACTTTATTAGACCA
Found at i:7998471 original size:3 final size:3
Alignment explanation
Indices: 7998463--7998490 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7998453 TTATAATTTT
7998463 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7998491 CATAATCATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7998518 original size:6 final size:6
Alignment explanation
Indices: 7998463--7998519 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
7998453 TTATAATTTT
* * * * * * *
7998463 TTATTA TTATTA TTATTA TTATTA TTATCA TAATCA TCATCA TCATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
7998511 TTATCA TTA
1 TTATCA TTA
7998520 AAAAAAAACT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (6 bp):
TTATCA
Found at i:7999370 original size:23 final size:23
Alignment explanation
Indices: 7999326--7999407 Score: 60
Period size: 24 Copynumber: 3.4 Consensus size: 23
7999316 GTATTTATCT
*
7999326 TTTATTTTATTAT-ATTTCATTTTA
1 TTTATTTT-TTATAAATT-ATTTTA
*
7999350 TTTATTTTTTATAAATTATTTGTC
1 TTTATTTTTTATAAATTATTT-TA
* *
7999374 TTT-TTTTTTAGAAACTTTTGTTTA
1 TTTATTTTTTATAAA-TTAT-TTTA
*
7999398 TTAATTTTTT
1 TTTATTTTTT
7999408 TATTTTTTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
23 18 0.38
24 21 0.45
25 8 0.17
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.70
Consensus pattern (23 bp):
TTTATTTTTTATAAATTATTTTA
Found at i:8003715 original size:23 final size:24
Alignment explanation
Indices: 8003672--8003720 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 24
8003662 TTTTTCAATA
8003672 AAAATATATTAATTCTAATTAATTT
1 AAAATATATTAATTCTAATT-ATTT
8003697 AAAATA-A-TAATT-TATATTATTT
1 AAAATATATTAATTCTA-ATTATTT
8003719 AA
1 AA
8003721 TAAAAAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
22 8 0.35
23 8 0.35
24 1 0.04
25 6 0.26
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
AAAATATATTAATTCTAATTATTT
Found at i:8004873 original size:115 final size:113
Alignment explanation
Indices: 8004665--8005002 Score: 312
Period size: 113 Copynumber: 3.0 Consensus size: 113
8004655 TTTACTTTTG
* * * ** * *
8004665 AATTTTGAAAAATA-TATTTTGCATATTTTCAATAAATGCTACATTTTTATCATATAAGCAT-TT
1 AATTATGAAAAATATTATTTTTCATATTTTCAACAAAAACTACGTTTTTATCATA-AA-AATATT
* * * *
8004728 TTTTTTTTAACAAAGATAGCATTTTGATCTTATAAATGTCGTTTTTGTTA
64 TTTTTTTCAACAAAGATAGCATTTTGATCTTAAAAATGTCATTTTTATTA
* * *
8004778 AATTATGAAAAATATGTATTTTTCATATTTTTAACAAAAACTATGTTTTTATCATAGAAATATTT
1 AATTATGAAAAATAT-TATTTTTCATATTTTCAACAAAAACTACGTTTTTATCATAAAAATATTT
* * *
8004843 TTTTTTCAATAAAGATTGCATTTTTTATCTTAAAAATGTCATTTTTATTA
65 TTTTTTCAACAAAGATAGCA-TTTTGATCTTAAAAATGTCATTTTTATTA
* * * * * *
8004893 AATTCTAAAAAATATT-TTTTTTATATATTCAACAAAAA-TAACGTTTTTATCTTAAAAATATCA
1 AATTATGAAAAATATTATTTTTCATATTTTCAACAAAAACT-ACGTTTTTATCATAAAAATAT-T
* *
8004956 TCTTTTT-AACAAAGACTA-CA-TTTGCTATCTTAAAAATATCATCTTTT
64 TTTTTTTCAACAAAGA-TAGCATTTTG--ATCTTAAAAATGTCAT-TTTT
8005003 CAACAAAACT
Statistics
Matches: 184, Mismatches: 31, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
111 3 0.02
112 1 0.01
113 76 0.41
114 33 0.18
115 71 0.39
ACGTcount: A:0.37, C:0.09, G:0.06, T:0.47
Consensus pattern (113 bp):
AATTATGAAAAATATTATTTTTCATATTTTCAACAAAAACTACGTTTTTATCATAAAAATATTTT
TTTTTCAACAAAGATAGCATTTTGATCTTAAAAATGTCATTTTTATTA
Found at i:8005122 original size:23 final size:23
Alignment explanation
Indices: 8005094--8005148 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
8005084 AAGAACCATG
* *
8005094 TTTTTATCTTA-GAAATATCATT
1 TTTTTATCTTATGAAAAATAATT
*
8005116 TTATTTA-ATTATGAAAAATAATT
1 TT-TTTATCTTATGAAAAATAATT
8005139 TTTTTATCTT
1 TTTTTATCTT
8005149 TTCAACAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.56
Consensus pattern (23 bp):
TTTTTATCTTATGAAAAATAATT
Found at i:8007496 original size:21 final size:21
Alignment explanation
Indices: 8007464--8007503 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
8007454 CTTATTATTG
8007464 TAATATTCAATTTCACTACTA
1 TAATATTCAATTTCACTACTA
8007485 TAATAGTT-AATTTCACTAC
1 TAATA-TTCAATTTCACTAC
8007504 CACCACTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.38, C:0.17, G:0.03, T:0.42
Consensus pattern (21 bp):
TAATATTCAATTTCACTACTA
Found at i:8009969 original size:202 final size:200
Alignment explanation
Indices: 8009563--8010047 Score: 543
Period size: 201 Copynumber: 2.4 Consensus size: 200
8009553 ATGTTTTTTC
* * * * * *
8009563 TTTTTATAACGTTAATTTTCATCAGCTATTTATGAAAAAAAATATCATTAAAGGTTATAATCGTC
1 TTTTTATGACATTAGTTTTCATAAGCTATATATGAAAAAAAATATCATTAAAGGTTATAATTGTC
*
8009628 ACAAAATAAATGATAAAATTTGATATACTTGTGACGAAAGGTAAATCGTCACAATATTGATGACA
66 ACAAAATAAATGATAAAATTTGATATACTTGTGACAAAAGGTAAATCGTCACAATATTGATGACA
* * * * * ** * **
8009693 CAATTATCGTTACCAATGATTGTAAGATAATGTTAAACATGACAATAAAATCAAACGTCGTCTTA
131 CAATTAACATGACAAATGATTGTAAAATAACATCAAACATGACAATAAAATCAAACGTCACCTTA
8009758 TATTT
196 TATTT
* * * ** * * *
8009763 TTTTTGTTGATATTATTTTTCATTGGCTATCTATGAAAAAAAATGGTCATTGAAGGTTATAATTG
1 TTTTT-ATGACATTAGTTTTCATAAGCTATATATGAAAAAAAAT-ATCATTAAAGGTTATAATTG
* *
8009828 TCACAAAATAAATGATAAAATCTT-ATAT-GTTAGTGACAAAAGGTAAATCGTCATAGGAT-TTG
64 TCACAAAATAAATGATAAAAT-TTGATATACTT-GTGACAAAAGGTAAATCGTCACA--ATATTG
* * **
8009890 -TGACATAATTAACATGATAAATG-TTGTAAAATAACATCAAATGTGACAATAAAATCAAACGTC
125 ATGACACAATTAACATGACAAATGATTGTAAAATAACATCAAACATGACAATAAAATCAAACGTC
8009953 ACCTTATATATT
190 ACCTTATAT-TT
*
8009965 TTTTTATGACATTAGATTTCATAAGCTATATATGAAAAAAAA-ATCATTAAATGG-TATAATTGT
1 TTTTTATGACATTAGTTTTCATAAGCTATATATGAAAAAAAATATCATTAAA-GGTTATAATTGT
* *
8010028 TACGAAATAAATGATAAAAT
65 CACAAAATAAATGATAAAAT
8010048 AATAATCTTC
Statistics
Matches: 238, Mismatches: 39, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
199 34 0.14
200 7 0.03
201 103 0.43
202 87 0.37
203 5 0.02
204 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (200 bp):
TTTTTATGACATTAGTTTTCATAAGCTATATATGAAAAAAAATATCATTAAAGGTTATAATTGTC
ACAAAATAAATGATAAAATTTGATATACTTGTGACAAAAGGTAAATCGTCACAATATTGATGACA
CAATTAACATGACAAATGATTGTAAAATAACATCAAACATGACAATAAAATCAAACGTCACCTTA
TATTT
Found at i:8010965 original size:39 final size:39
Alignment explanation
Indices: 8010908--8010983 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
8010898 CCCCAAACGA
* * *
8010908 CTATCAATTAAAGTGATACCTTTGAGCAAAATATAGTCC
1 CTATCAATTAAAGAGATACCTTTGAACAAAACATAGTCC
8010947 CTATCAATTAAAGAGATACCTTTGAACAAAACATAGT
1 CTATCAATTAAAGAGATACCTTTGAACAAAACATAGT
8010984 TGACTATTGC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (39 bp):
CTATCAATTAAAGAGATACCTTTGAACAAAACATAGTCC
Found at i:8011769 original size:118 final size:120
Alignment explanation
Indices: 8011636--8011871 Score: 379
Period size: 120 Copynumber: 2.0 Consensus size: 120
8011626 AATACAATAA
* * * * *
8011636 TTTTTTAATTTCAATAATTATTATTATATTTT-AAAAAATATCAAATA-TAAAATTTTTCAAAAC
1 TTTTTTAATTTCAATAATTATTAATACATTTTAAAAAAATATCAAATACAAAAAATTTTAAAAAC
8011699 AAATAT-AATCCTTAATACATATCAAACCCAAATTTAACATAAAATCAACATAAGT
66 AAATATAAAT-CTTAATACATATCAAACCCAAATTTAACATAAAATCAACATAAGT
*
8011754 TTTTTTAATTTCAATAATTATTAATACATTTTAAAAAAATATCAAATACAAAAAATTTTAAAAAT
1 TTTTTTAATTTCAATAATTATTAATACATTTTAAAAAAATATCAAATACAAAAAATTTTAAAAAC
*
8011819 AAATATAAATCTTAATACATATCAAACCCAAATTTATCATAAAATCAACATAA
66 AAATATAAATCTTAATACATATCAAACCCAAATTTAACATAAAATCAACATAA
8011872 ATCTTACACA
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
118 30 0.28
119 15 0.14
120 60 0.56
121 3 0.03
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (120 bp):
TTTTTTAATTTCAATAATTATTAATACATTTTAAAAAAATATCAAATACAAAAAATTTTAAAAAC
AAATATAAATCTTAATACATATCAAACCCAAATTTAACATAAAATCAACATAAGT
Found at i:8011910 original size:120 final size:119
Alignment explanation
Indices: 8011668--8011912 Score: 266
Period size: 120 Copynumber: 2.1 Consensus size: 119
8011658 ATTATATTTT
* * *
8011668 AAAAAATATCAAATATAAAATTTTTCAAAACAAATATAATCCTTAATACATATCAAACCCAAATT
1 AAAAAATATCAAATAAAAAAATTTTAAAAACAAATATAATCCTTAATACATATCAAACCCAAATT
* * ** * * * ***
8011733 TAACATAAAATCAACATAAGTTTTTTTAATTTCAATAATTATTAATACATTTTA
66 TAACATAAAATCAACATAAGATCTTACAATCTCAATAATAATAAATACATAAGA
*
8011787 AAAAAATATCAAATACAAAAAATTTTAAAAATAAATATAAAT-CTTAATACATATCAAACCCAAA
1 AAAAAATATCAAATA-AAAAAATTTTAAAAACAAATAT-AATCCTTAATACATATCAAACCCAAA
*
8011851 TTTATCATAAAATCAACATAA-ATCTTACACATCT-AA-AAGTCAATAAAT-CTATAAGA
64 TTTAACATAAAATCAACATAAGATCTTACA-ATCTCAATAA-T-AATAAATAC-ATAAGA
8011907 AAAAAA
1 AAAAAA
8011913 CCCAACAAAT
Statistics
Matches: 105, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
118 2 0.02
119 23 0.22
120 77 0.73
121 3 0.03
ACGTcount: A:0.55, C:0.13, G:0.01, T:0.31
Consensus pattern (119 bp):
AAAAAATATCAAATAAAAAAATTTTAAAAACAAATATAATCCTTAATACATATCAAACCCAAATT
TAACATAAAATCAACATAAGATCTTACAATCTCAATAATAATAAATACATAAGA
Found at i:8013064 original size:8 final size:8
Alignment explanation
Indices: 8013051--8013111 Score: 52
Period size: 8 Copynumber: 7.6 Consensus size: 8
8013041 AAGATTTTCA
8013051 AAAAAAAT
1 AAAAAAAT
*
8013059 AAAAAAGT
1 AAAAAAAT
8013067 AAAAAAAT
1 AAAAAAAT
*
8013075 -AAATAAT
1 AAAAAAAT
* *
8013082 TAAAAACT
1 AAAAAAAT
* *
8013090 AAGATAAT
1 AAAAAAAT
8013098 AAAATAAAT
1 AAAA-AAAT
8013107 AAAAA
1 AAAAA
8013112 TAAAATGAAA
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
7 6 0.15
8 27 0.68
9 7 0.17
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (8 bp):
AAAAAAAT
Found at i:8013117 original size:15 final size:15
Alignment explanation
Indices: 8013051--8013116 Score: 71
Period size: 16 Copynumber: 4.3 Consensus size: 15
8013041 AAGATTTTCA
*
8013051 AAAAAAATAAAAAAGT
1 AAAAAAATAAATAA-T
8013067 AAAAAAATAAATAAT
1 AAAAAAATAAATAAT
* *
8013082 TAAAAACTAAGATAAT
1 AAAAAAATAA-ATAAT
8013098 AAAATAAATAAA-AAT
1 AAAA-AAATAAATAAT
8013113 AAAA
1 AAAA
8013117 TGAAAATGGA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
15 16 0.37
16 22 0.51
17 5 0.12
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (15 bp):
AAAAAAATAAATAAT
Found at i:8013256 original size:24 final size:24
Alignment explanation
Indices: 8013219--8013270 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
8013209 TCAAGATAAT
*
8013219 AAAATAAATAAAAAT-GAAAACAA
1 AAAATAAATAAAAATGGAAAAAAA
*
8013242 AAAATAAAATGAAAATGGAAAAAAA
1 AAAAT-AAATAAAAATGGAAAAAAA
8013267 AAAA
1 AAAA
8013271 CCTGTGAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.20
24 9 0.36
25 11 0.44
ACGTcount: A:0.79, C:0.02, G:0.08, T:0.12
Consensus pattern (24 bp):
AAAATAAATAAAAATGGAAAAAAA
Found at i:8018612 original size:13 final size:12
Alignment explanation
Indices: 8018544--8018617 Score: 60
Period size: 13 Copynumber: 5.8 Consensus size: 12
8018534 ATTTTTTTTA
8018544 AAAATAAAAAAGT
1 AAAATAAAAAA-T
*
8018557 AAAAAACCAAAAAT
1 AAAATA--AAAAAT
*
8018571 AAAATAGTAAAAT
1 AAAATA-AAAAAT
8018584 -AAATAAAAAAT
1 AAAATAAAAAAT
*
8018595 GAAATCAAAAAAT
1 AAAAT-AAAAAAT
8018608 AAAATGAAAA
1 AAAAT-AAAA
8018618 TGGAAAAAGA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
11 5 0.10
12 9 0.18
13 25 0.50
14 6 0.12
15 5 0.10
ACGTcount: A:0.76, C:0.04, G:0.05, T:0.15
Consensus pattern (12 bp):
AAAATAAAAAAT
Found at i:8019075 original size:10 final size:10
Alignment explanation
Indices: 8019031--8019078 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
8019021 GAAACTCCCA
8019031 AAAAC-TTCC
1 AAAACTTTCC
*
8019040 AAAATTTTCC
1 AAAACTTTCC
**
8019050 AAATTTCTTCC
1 AAAACT-TTCC
8019061 AAAACTTTCC
1 AAAACTTTCC
8019071 AAAACTTT
1 AAAACTTT
8019079 AATCTCAACT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
9 4 0.12
10 21 0.64
11 8 0.24
ACGTcount: A:0.40, C:0.25, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAACTTTCC
Done.