Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 49 of 190
Found at i:8217917 original size:34 final size:34
Alignment explanation
Indices: 8217870--8217938 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
8217860 CTTATATCCC
**
8217870 ATAACTCTAGGGTTGGCTGTTTGAAAGGCCAAAA
1 ATAACTCTAGGGTTGGCTGCATGAAAGGCCAAAA
* *
8217904 ATAACTCTGGGGTTGGCTGCATGAGAGGCCAAAA
1 ATAACTCTAGGGTTGGCTGCATGAAAGGCCAAAA
8217938 A
1 A
8217939 AAAAAGAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (34 bp):
ATAACTCTAGGGTTGGCTGCATGAAAGGCCAAAA
Found at i:8222860 original size:22 final size:25
Alignment explanation
Indices: 8222828--8222886 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
8222818 TAATGAATTG
8222828 AAATATATAAAAACTT-AAG-CAT-A
1 AAATA-ATAAAAACTTAAAGACATGA
* *
8222851 AAATAATAAAAATTTAAAGATATGA
1 AAATAATAAAAACTTAAAGACATGA
8222876 AAATAATAAAA
1 AAATAATAAAA
8222887 CTATTTTATC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 9 0.29
23 8 0.26
24 2 0.06
25 12 0.39
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.25
Consensus pattern (25 bp):
AAATAATAAAAACTTAAAGACATGA
Found at i:8223403 original size:110 final size:110
Alignment explanation
Indices: 8223210--8223539 Score: 597
Period size: 110 Copynumber: 3.0 Consensus size: 110
8223200 TGGAAAGACA
* *
8223210 AATAATAGGTTTTCAAGTAAGTTCAAGCTTCACCTTAACCATTAAGGTTTTCCCTTTTTGAGATT
1 AATAATAGGTTTCCAAGTAAGTTCAAGCTTCACCTTAATCATTAAGGTTTTCCCTTTTTGAGATT
8223275 TAATTACTATCTTTAGTTGAACAACTAGCAATTTGTTCTCCTGAT
66 TAATTACTATCTTTAGTTGAACAACTAGCAATTTGTTCTCCTGAT
*
8223320 AATAATAGGTTTCCAAGTAAGTTCAAGCTTCACCTTAATCATTAAGGTTTTCCCTTTTTAAGATT
1 AATAATAGGTTTCCAAGTAAGTTCAAGCTTCACCTTAATCATTAAGGTTTTCCCTTTTTGAGATT
*
8223385 TAATTACTATCTTTAGTTGAACAACTAGCAATTTGTTCTCCTGAC
66 TAATTACTATCTTTAGTTGAACAACTAGCAATTTGTTCTCCTGAT
*
8223430 AATAATAGGTTTCCAAGTAAGTTCAAGCTTCACCTTAATCATTAAGATTTTCCCTTTTTGAGATT
1 AATAATAGGTTTCCAAGTAAGTTCAAGCTTCACCTTAATCATTAAGGTTTTCCCTTTTTGAGATT
* *
8223495 TAATTACTATCTTTAGTTGAACATCTAGCAATTTGTTCTCTTGAT
66 TAATTACTATCTTTAGTTGAACAACTAGCAATTTGTTCTCCTGAT
8223540 TAGGAGTGTA
Statistics
Matches: 211, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
110 211 1.00
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.41
Consensus pattern (110 bp):
AATAATAGGTTTCCAAGTAAGTTCAAGCTTCACCTTAATCATTAAGGTTTTCCCTTTTTGAGATT
TAATTACTATCTTTAGTTGAACAACTAGCAATTTGTTCTCCTGAT
Found at i:8225508 original size:17 final size:17
Alignment explanation
Indices: 8225457--8225509 Score: 52
Period size: 18 Copynumber: 3.0 Consensus size: 17
8225447 AAATAATTTG
*
8225457 TATTATTTTAATAATTAA
1 TATTATTTTAATAA-TAT
* * *
8225475 TAGTGTTTAATATAATAT
1 TATTATTTTA-ATAATAT
8225493 TATTATTTTAATAATAT
1 TATTATTTTAATAATAT
8225510 GACTGTTTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
17 7 0.26
18 16 0.59
19 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (17 bp):
TATTATTTTAATAATAT
Found at i:8225650 original size:20 final size:22
Alignment explanation
Indices: 8225616--8225655 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
8225606 AATTTAATAA
8225616 TAAATATTTTCAATA-TAAAAT
1 TAAATATTTTCAATAGTAAAAT
*
8225637 TAAA-ATTTTTAATAGTAAA
1 TAAATATTTTCAATAGTAAA
8225656 TATTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (22 bp):
TAAATATTTTCAATAGTAAAAT
Found at i:8228601 original size:21 final size:21
Alignment explanation
Indices: 8228577--8228619 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
8228567 CTCTTGATCC
8228577 ATTTTAGTATGCTCTTCTTCT
1 ATTTTAGTATGCTCTTCTTCT
*
8228598 ATTTTAGTATGCTCTTTTTCT
1 ATTTTAGTATGCTCTTCTTCT
8228619 A
1 A
8228620 GTCTAGCAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.16, G:0.09, T:0.58
Consensus pattern (21 bp):
ATTTTAGTATGCTCTTCTTCT
Found at i:8229498 original size:161 final size:160
Alignment explanation
Indices: 8229199--8231003 Score: 1212
Period size: 161 Copynumber: 11.3 Consensus size: 160
8229189 AAGTTTAAAT
* ** * * * *
8229199 ATTCGGACAAGTTTAATATCAT-TATTGGAGCTATTTAAACTATTAAAACAAAACA-AGAATTGC
1 ATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATAAAA-ATATAACTGC
* * * * * * * * * * *
8229262 AAATTTGCATTTTTATCTTTTGA-TGTTACAAAAAGTCCTAAACAGATATAAACCG-TAACTTAT
65 AAAATTACATTTTT-GCCTTTAACAG-TACAAAAAGTCATAAACAAACATAAA-TGATAACTTTT
*** * ** *
8229325 TCATGCATATCAAGCGTTG-TAATTAAGTTCAAAC
127 TCACATATATCAAGCG-TGAAAACCAAGTTCAATC
* * * * * *
8229359 ATTCAAACAAGTTTAATATCATATATTTAAGCTATCTAACCTATTAAAATAGAAATATAATTACA
1 ATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATAAAAATATAACTGCA
** * * *
8229424 AAATTACATTTTTGGCCTTTAATGGTACCAAAAGTCATAAACAAACATAAATGGTAATTTTTTCA
66 AAATTACATTTTT-GCCTTTAACAGTACAAAAAGTCATAAACAAACATAAATGATAACTTTTTCA
* * *
8229489 CAAATATCAAGTGTGAAAACCAAGTTCAAAC
130 CATATATCAAGCGTGAAAACCAAGTTCAATC
* * ** * * * **
8229520 ATTCATACAAGTTTAATATCATGTACTGGAGCTATCTAAACTATTAAAACAAAAACATAATTATA
1 ATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATAAAAATATAACTGCA
* * * * * * * *
8229585 AAATTACATTTTTACCCTTTAACGACATAAAAAAAAGTCCTAAATAAAGATAAATGACAATTTTT
66 AAATTACATTTTT-GCCTTTAAC-A-GT-ACAAAAAGTCATAAACAAACATAAATGATAACTTTT
** * *
8229650 TCACATATATCACTCGTGAAAACTAAGTTCAATA
127 TCACATATATCAAGCGTGAAAACCAAGTTCAATC
* * * *
8229684 ATTCAGACAAGTATAATATCATTTATTTAAGCTATCTAAACTGTTAAAATAAAAATATAACTACA
1 ATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATAAAAATATAACTGCA
* * * * * * * * *
8229749 ACATTATATTTTTACCCTTTAACAATGC-AAATGATCCTAAACAAATATAAAT-AGTAATTTTTT
66 AAATTACATTTTT-GCCTTTAACAGTACAAAAAG-TCATAAACAAACATAAATGA-TAA-CTTTT
* *
8229812 TCACATATATCAATCGTGAAAATCAAGCTT-AATC
127 TCACATATATCAAGCGTGAAAACCAAG-TTCAATC
** * * *
8229846 ATTTGGACAAGTTTAATATCATGTATTTAAGCTATCTAAA--AGTTAAAAATATATATATAATTG
1 ATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTA-TT-AAAATAAAAATATAACTG
* * * * *
8229909 TAAAATTACATTTTTATCCTTTAACAGCACAAAAAGT-ACTAAATAAACTTAAAT-AGTAACTTT
64 CAAAATTACATTTTT-GCCTTTAACAGTACAAAAAGTCA-TAAACAAACATAAATGA-TAACTTT
* **
8229972 TTCACACATATCAAGCGTGAAAATGAAGTTCAATC
126 TTCACATATATCAAGCGTGAAAACCAAGTTCAATC
* * * * *
8230007 ATTCGGACAAGTTTAATATTATATATTGAAGCTATCTAAACTATTAAAATATAACA-ATAACTG-
1 ATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATA-AAAATATAACTGC
* ** * * * * * * ** *
8230070 TAAATT-TGTATTT---TTTGACAGTAGAAAAAGTCCTAAACAGACTTAAACCATTACTTTTTCA
65 AAAATTACATTTTTGCCTTTAACAGTACAAAAAGTCATAAACAAACATAAATGATAACTTTTTCA
* * * * *
8230131 CACATATCAATG-ATGGAAACTAAGTTCAATT
130 CATATATCAA-GCGTGAAAACCAAGTTCAATC
* * * * * *
8230162 ATTC-GAACAAGTTTAATATCATATATTTAAACTATCTAAACTGTTAAAACATAACAT-TAATTG
1 ATTCAG-ACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATA-AAAATATAACTG
* * * ** * *
8230225 CATAACTGCATTTTCACCCTTTAACAGTACAAAAAGTTATAAGCAAACATAAACT-ATAACTTTT
64 CAAAATTACATTTT-TGCCTTTAACAGTACAAAAAGTCATAAACAAACATAAA-TGATAACTTTT
* * * *
8230289 TCATATATATAAATCATGAAAACCAAGTTCAATC
127 TCACATATATCAAGCGTGAAAACCAAGTTCAATC
* * * * ** * *
8230323 ATTAAAAGAAGTTTAATATTATGTATTGGAGCTATCTAAATTATTAAAACAAAACA-ATAACTGC
1 ATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATAAAA-ATATAACTGC
* ** * * * * * ** *
8230387 ATAATTGTATTTTTACCTTTAACGGTACAAAAAGTCTTAAATAGACATAAACAATAATTTTTTCA
65 AAAATTACATTTTTGCCTTTAACAGTACAAAAAGTCATAAACAAACATAAATGATAACTTTTTCA
* * * * *
8230452 CACATATCAATCATGAAAACTAAGTTTAATC
130 CATATATCAAGCGTGAAAACCAAGTTCAATC
* ** ** * * * *
8230483 ATGCCCACAAGTTTAATATCATGTATTGGAGCTATCTAAACTGTTACAATAGAACA-ATAACTAC
1 ATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATA-AAAATATAACTGC
* * * * * * *
8230547 ATAATTACATTTTT-CCCTTAACA--ACATAAAAGTCCTAAACAAATATGAACGATAACTTTTTT
65 AAAATTACATTTTTGCCTTTAACAGTACA-AAAAGTCATAAACAAACATAAATGATAACTTTTTC
* * * * * *
8230609 ACACATATAAATCATGGAAACTAAGTTCAATC
129 ACATATATCAAGCGTGAAAACCAAGTTCAATC
** * * * * *
8230641 ATTCTCACAAGTTTAATATTATGTATTTAAGCTATCTTAACTTTTAAAACAAAAATATAATTGCA
1 ATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATAAAAATATAACTGCA
* * * * **
8230706 AAATTACATTTTTGCCCTTAACAGCACAAAAAATCTTAAACAAACATAAATGGCAACTTTTTCAC
66 AAATTACATTTTTGCCTTTAACAGTACAAAAAGTCATAAACAAACATAAATGATAACTTTTTCAC
* *
8230771 ATATATCAAGCAT-CAAACCAAGTTCAATC
131 ATATATCAAGCGTGAAAACCAAGTTCAATC
* * * * * *
8230800 ATTTAGACAAGTTCAATATAATGCATTTAACCTATCTAAACTATTAAAAT-AGAATAATAACTG-
1 ATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATAAAAAT-ATAACTGC
* * * * *
8230863 TAAATTATATTTTTGCCTTTTGACGGTAAAAAAAAAGTCATAAACAAACATAAACTG-TAACTTT
65 AAAATTACATTTTTGCC-TTTAACAGT--ACAAAAAGTCATAAACAAACATAAA-TGATAACTTT
8230927 TTCACATATATCAAG-GT-ATTAAACCAAGTTCAA-C
126 TTCACATATATCAAGCGTGA--AAACCAAGTTCAATC
** * *
8230961 TATTTGGACAAGTTTAATATCATATATTAAAGCTATCTAAACT
1 -ATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACT
8231004 GAAAAAAATC
Statistics
Matches: 1320, Mismatches: 274, Indels: 100
0.78 0.16 0.06
Matches are distributed among these distances:
154 1 0.00
155 115 0.09
156 5 0.00
157 9 0.01
158 136 0.10
159 85 0.06
160 206 0.16
161 443 0.34
162 180 0.14
163 9 0.01
164 131 0.10
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (160 bp):
ATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATAAAAATATAACTGCA
AAATTACATTTTTGCCTTTAACAGTACAAAAAGTCATAAACAAACATAAATGATAACTTTTTCAC
ATATATCAAGCGTGAAAACCAAGTTCAATC
Found at i:8230287 original size:316 final size:314
Alignment explanation
Indices: 8229348--8231003 Score: 995
Period size: 321 Copynumber: 5.2 Consensus size: 314
8229338 GCGTTGTAAT
* * * * * *
8229348 TAAGTTCAAACATTCAAACAAGTTTAATATCATATATTTAAGCTATCTAACCTATTAAAATAGAA
1 TAAGTTCAATCATTCAAACAAGTTTAATATTATGTATTGAAGCTATCTAAACTATTAAAACA-AA
* * * * ** ** * * * **
8229413 A-TATAATTACAAAATTACATTTTTGGCCTTTAATGGTACCAAAAGTCATAAACAAACATAAATG
65 ACAATAACTGCATAATTGTA-TTTT---CTTTAACAGTACAAAAAGTCCTAAACAGACATAAACA
* * * * * * *
8229477 GTAATTTTTTCACAAATATCAAGT-GTGAAAACCAAGTTCAAACAT-TCATACAAGTTTAATATC
126 ATAACTTTTTCACACATATCAA-TCATGAAAACTAAGTTCAATCATGCCA-ACAAGTTTAATATC
* ** * * ** *
8229540 ATGTACTGGAGCTATCTAAACTATTAAAACAAAAACA-TAATTATAAAATTACATTTTTACCCTT
189 ATGTATTTAAGCTATCTAAACTGTT-AAA-AATAACATTAATTGCATAATTACA-TTTTACCCTT
** * * * * * * * *
8229604 TAAC-GACATAAAAAAAAGTCCTAAATAAAGATAAA-TGACAATTTTTTCACATATATCACTCGT
251 TAACAGAC-----AAAAAGTTATAAACAAACATAAACT-ATAACTTTTTCACACATATAAATCAT
8229667 GAAAA
310 GAAAA
* * * * * * * *
8229672 CTAAGTTCAATAATTCAGACAAGTATAATATCATTTATTTAAGCTATCTAAACTGTTAAAATAAA
1 -TAAGTTCAATCATTCAAACAAGTTTAATATTATGTATTGAAGCTATCTAAACTATTAAAACAAA
* * * * * * *
8229737 A-ATATAACTACA-ACATTATATTTTTACCCTTTAACAATGC-AAATGATCCTAAACAAATATAA
65 ACA-ATAACTGCATA-ATTGTA-TTTT---CTTTAACAGTACAAAAAG-TCCTAAACAGACATAA
* * * * * ****
8229799 ATAGTAATTTTTTTCACATATATCAATCGTGAAAA-TCAAGCTT-AATCATTTGGACAAGTTTAA
123 ACAATAA-CTTTTTCACACATATCAATCATGAAAACT-AAG-TTCAATCATGCCAACAAGTTTAA
* * * * *
8229862 TATCATGTATTTAAGCTATCTAAA-AGTTAAAAATATATATATAATTGTAAAATTACATTTTTAT
185 TATCATGTATTTAAGCTATCTAAACTGTTAAAAATA-ACAT-TAATTGCATAATTACA-TTTTAC
* * * * *
8229926 CCTTTAACAGCACAAAAAG-TACTAAATAAACTTAAA-TAGTAACTTTTTCACACATATCAAGCG
247 CCTTTAACAG-ACAAAAAGTTA-TAAACAAACATAAACTA-TAACTTTTTCACACATATAAATCA
8229989 TGAAAA
309 TGAAAA
** * * *
8229995 TGAAGTTCAATCATTCGGACAAGTTTAATATTATATATTGAAGCTATCTAAACTATTAAAATATA
1 T-AAGTTCAATCATTCAAACAAGTTTAATATTATGTATTGAAGCTATCTAAACTATTAAAACAAA
* * * * * *
8230060 ACAATAACTGTA-AATTTGTA-TTT-TTTGACAGTAGAAAAAGTCCTAAACAGACTTAAACCATT
65 ACAATAACTGCATAA-TTGTATTTTCTTTAACAGTACAAAAAGTCCTAAACAGACATAAACAATA
* * * * * *
8230122 ACTTTTTCACACATATCAATGATGGAAACTAAGTTCAATTATTCGAACAAGTTTAATATCATATA
129 ACTTTTTCACACATATCAATCATGAAAACTAAGTTCAATCATGCCAACAAGTTTAATATCATGTA
* * *
8230187 TTTAAACTATCTAAACTGTTAAAACATAACATTAATTGCATAACTGCATTTTCACCCTTTAACAG
194 TTTAAGCTATCTAAACTGTTAAAA-ATAACATTAATTGCATAATTACATTTT-ACCCTTTAACAG
* * *
8230252 TACAAAAAGTTATAAGCAAACATAAACTATAACTTTTTCATATATATAAATCATGAAAA
257 -ACAAAAAGTTATAAACAAACATAAACTATAACTTTTTCACACATATAAATCATGAAAA
* * * * *
8230311 CCAAGTTCAATCATTAAAAGAAGTTTAATATTATGTATTGGAGCTATCTAAATTATTAAAACAAA
1 -TAAGTTCAATCATTCAAACAAGTTTAATATTATGTATTGAAGCTATCTAAACTATTAAAACAAA
* * *
8230376 ACAATAACTGCATAATTGTATTTTTACCTTTAACGGTACAAAAAGTCTTAAATAGACATAAACAA
65 ACAATAACTGCATAATTGTA-TTTT--CTTTAACAGTACAAAAAGTCCTAAACAGACATAAACAA
* * *
8230441 TAATTTTTTCACACATATCAATCATGAAAACTAAGTTTAATCATGCCCACAAGTTTAATATCATG
127 TAACTTTTTCACACATATCAATCATGAAAACTAAGTTCAATCATGCCAACAAGTTTAATATCATG
** * * * * * *
8230506 TATTGGAGCTATCTAAACTGTTACAATAGAACAATAACTACATAATTACATTTTTCCC-TTAACA
192 TATTTAAGCTATCTAAACTGTTA-AAAATAACATTAATTGCATAATTACATTTTACCCTTTAACA
** * * * * *
8230570 -ACATAAAAGTCCTAAACAAATATGAACGATAACTTTTTTACACATATAAATCATGGAAAC
256 GACA-AAAAGTTATAAACAAACATAAACTATAACTTTTTCACACATATAAATCAT-GAAAA
** * * *
8230630 TAAGTTCAATCATTCTCACAAGTTTAATATTATGTATTTAAGCTATCTTAACTTTTAAAACAAAA
1 TAAGTTCAATCATTCAAACAAGTTTAATATTATGTATTGAAGCTATCTAAACTATTAAAACAAAA
* * ** * * * * * ***
8230695 -ATATAATTGCAAAATTACATTTTTGCCCTTAACAGCACAAAAAATCTTAAACAAACATAAATGG
66 CA-ATAACTGCATAATTGTA-TTTT--CTTTAACAGTACAAAAAGTCCTAAACAGACATAAACAA
* * * * * ** * *
8230759 CAACTTTTTCACATATATCAAGCAT-CAAACCAAGTTCAATCAT-TTAGACAAGTTCAATATAAT
127 TAACTTTTTCACACATATCAATCATGAAAACTAAGTTCAATCATGCCA-ACAAGTTTAATATCAT
* * * * * * * * * * * *
8230822 GCATTTAACCTATCTAAACTATTAAAATAGAATAATAACTGTA-AATTATATTTTTGCCTTTTGA
191 GTATTTAAGCTATCTAAACTGTTAAAA-ATAACATTAATTGCATAATTACA-TTTTACCCTTTAA
* * * * * * *
8230886 CGGTAAAAAAAAAGTCATAAACAAACATAAACTGTAACTTTTTCACATATATCAAGGT-ATTAAA
254 C---AGACAAAAAGTTATAAACAAACATAAACTATAACTTTTTCACACATAT-AA-ATCATGAAA
*
8230950 C
314 A
* *** * * *
8230951 CAAGTTCAA-CTATTTGGACAAGTTTAATATCATATATTAAAGCTATCTAAACT
1 TAAGTTCAATC-ATTCAAACAAGTTTAATATTATGTATTGAAGCTATCTAAACT
8231004 GAAAAAAATC
Statistics
Matches: 1075, Mismatches: 208, Indels: 100
0.78 0.15 0.07
Matches are distributed among these distances:
315 6 0.01
316 209 0.19
317 110 0.10
318 179 0.17
319 10 0.01
320 4 0.00
321 213 0.20
322 11 0.01
323 116 0.11
324 14 0.01
325 105 0.10
326 92 0.09
327 4 0.00
328 2 0.00
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (314 bp):
TAAGTTCAATCATTCAAACAAGTTTAATATTATGTATTGAAGCTATCTAAACTATTAAAACAAAA
CAATAACTGCATAATTGTATTTTCTTTAACAGTACAAAAAGTCCTAAACAGACATAAACAATAAC
TTTTTCACACATATCAATCATGAAAACTAAGTTCAATCATGCCAACAAGTTTAATATCATGTATT
TAAGCTATCTAAACTGTTAAAAATAACATTAATTGCATAATTACATTTTACCCTTTAACAGACAA
AAAGTTATAAACAAACATAAACTATAACTTTTTCACACATATAAATCATGAAAA
Found at i:8230976 original size:639 final size:639
Alignment explanation
Indices: 8229348--8231003 Score: 1509
Period size: 639 Copynumber: 2.6 Consensus size: 639
8229338 GCGTTGTAAT
* * *
8229348 TAAGTTCAAACATTCAAACAAGTTTAATATCATATATTTAAGCTATC-TAACCTATTAAAATAGA
1 TAAGTTCAATCATTCAAACAAGTTTAATATTATATATTTAAGCTATCTTAA-CTATTAAAATAAA
* ** *
8229412 AATATAATTACAAAATTACATTTTTGGCCTTTAATGGTACCAAAAGTCATAAACAAACATAAATG
65 AATATAATTGCAAAATTACATTTTT-GCC-TTAACAGTACAAAAAGTCATAAACAAACATAAATG
* * * * * *
8229477 GTAATTTTTTCACAAATATCAAGTGTGAAAACCAAGTTCAAACATTCATACAAGTTTAATATCAT
128 GCAACTTTTTCACAAATATCAAG-ATGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCAT
* ** * *
8229542 GTACTGGAGCTATCTAAACTATTAAAACAAAAACATAATTATAAAATTACATTTTTACCCTTTAA
192 GTATTTAAACTATCTAAACTATTAAAACAAAAA-ATAATTGT-AAATTACATTTTTACCCTTTAA
** * * * * * * *
8229607 CGACATAAAAAAAAGTCCTAAATAAAGATAAA-TGACAATTTTTTCACATATATC-ACTCGTGAA
255 CGGTA-AAAAAAAAGTCATAAACAAACATAAACTG-TAACTTTTTCACATATATCAAGTCAT--A
* * * * * * *
8229670 AACTAAGTTCAATAATTCAGACAAGTATAATATCATTTATTTAAGCTATCTAAACTGTTAAAATA
316 AACCAAGTTCAATAATTAAGACAAGTTTAATATCATATATTAAAGCTATCTAAACTATTAAAACA
* * *
8229735 AAAATATAACTACAACATTATATTTTTACCCTTTAACAATGCAAATGATCCTAAACAAATATAAA
381 AAAATATAACTACAACATTATATTTTTACCCTTTAACAATACAAAAGATCCTAAACAAACATAAA
* * * * ****
8229800 TAGTAATTTTTTTCACATATATCAATCGTGAAAATCAAGCTTAATCATTTGGACAAGTTTAATAT
446 CAATAATTTTTTTCACACATATCAATCATGAAAATCAAGCTTAATCATGCCCACAAGTTTAATAT
* * * * ** *
8229865 CATGTATTTAAGCTATCTAAAAGTTAAAAATATATATATAATTGTAAAATTACATTTTTATCCTT
511 CATGTATTGAAGCTATCTAAAAGTTAAAAATAGATAAATAACTACAAAATTACATTTTTATCCCT
* * * *
8229930 TAACAGCACAAAAAGTACTAAATAAACTTAAATAGTAACTTTTTCACACATATCAAGCGTGAAAA
576 TAACA-CACAAAAAGTACTAAACAAACTTAAAGAGTAACTTTTTCACACATATAAAGCATGAAAA
** * *
8229995 TGAAGTTCAATCATTCGGACAAGTTTAATATTATATATTGAAGCTATCTAAACTATTAAAATATA
1 T-AAGTTCAATCATTCAAACAAGTTTAATATTATATATTTAAGCTATCTTAACTATTAAAATA-A
* * * * ** * * * * * *
8230060 ACA-ATAACTGTAAATTTGTA-TTTT---TTGACAGTAGAAAAAGTCCTAAACAGACTTAAA--C
64 AAATATAATTGCAAAATTACATTTTTGCCTTAACAGTACAAAAAGTCATAAACAAACATAAATGG
* * * * *
8230118 CATTACTTTTTCACACATATCAATGATGGAAACTAAGTTCAATTA-TTCGAACAAGTTTAATATC
129 CA--ACTTTTTCACAAATATCAA-GATGAAAACCAAGTTCAATCATTTAG-ACAAGTTTAATATC
* * * * * * * *
8230182 ATATATTTAAACTATCTAAACTGTTAAAACATAACATTAATTGCATAACTGCATTTTCACCCTTT
190 ATGTATTTAAACTATCTAAACTATTAAAACA-AAAAATAATTGTA-AATTACATTTTTACCCTTT
* * * * * * *
8230247 AACAGT--ACAAAAAGTTATAAGCAAACATAAACTATAACTTTTTCATATATAT-AAATCATGAA
253 AACGGTAAAAAAAAAGTCATAAACAAACATAAACTGTAACTTTTTCACATATATCAAGTCAT--A
* * * * * ** *
8230309 AACCAAGTTCAATCATTAAAAGAAGTTTAATATTATGTATTGGAGCTATCTAAATTATTAAAACA
316 AACCAAGTTCAATAATTAAGACAAGTTTAATATCATATATTAAAGCTATCTAAACTATTAAAACA
* * ** * * *
8230374 AAACA-ATAACTGCATA-ATTGTATTTTTA-CCTTTAACGGTACAAAA-AGTCTTAAATAGACAT
381 AAA-ATATAACTACA-ACATTATATTTTTACCCTTTAACAATACAAAAGA-TCCTAAACAAACAT
*
8230435 AAACAATAA-TTTTTTCACACATATCAATCATGAAAA-CTAAGTTTAATCATGCCCACAAGTTTA
443 AAACAATAATTTTTTTCACACATATCAATCATGAAAATC-AAGCTTAATCATGCCCACAAGTTTA
* * * *
8230498 ATATCATGTATTGGAGCTATCTAAACTGTT-ACAATAGA-ACAATAACTACATAATTACA-TTTT
507 ATATCATGTATTGAAGCTATCTAAA-AGTTAAAAATAGATA-AATAACTACAAAATTACATTTTT
* * * *
8230560 -TCCCTTAACA-ACATAAAAGTCCTAAACAAA-TATGAACGA-TAACTTTTTTACACATATAAAT
570 ATCCCTTAACACACA-AAAAGTACTAAACAAACT-T-AAAGAGTAACTTTTTCACACATATAAAG
*
8230621 CATGGAAAC
632 CAT-GAAAA
** * * *
8230630 TAAGTTCAATCATTCTCACAAGTTTAATATTATGTATTTAAGCTATCTTAACTTTTAAAACAAAA
1 TAAGTTCAATCATTCAAACAAGTTTAATATTATATATTTAAGCTATCTTAACTATTAAAATAAAA
* * *
8230695 ATATAATTGCAAAATTACATTTTTGCCCTTAACAGCACAAAAAATCTTAAACAAACATAAATGGC
66 ATATAATTGCAAAATTACATTTTTG-CCTTAACAGTACAAAAAGTCATAAACAAACATAAATGGC
* * * * *
8230760 AACTTTTTCACATATATCAAGCAT-CAAACCAAGTTCAATCATTTAGACAAGTTCAATATAATGC
130 AACTTTTTCACAAATATCAAG-ATGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGT
* * * * * * * *
8230824 ATTTAACCTATCTAAACTATTAAAATAGAATAATAACTGTAAATTATATTTTTGCCTTTTGACGG
194 ATTTAAACTATCTAAACTATTAAAACA-AAAAATAATTGTAAATTACATTTTTACCCTTTAACGG
8230889 TAAAAAAAAAGTCATAAACAAACATAAACTGTAACTTTTTCACATATATCAAGGT-ATTAAACCA
258 TAAAAAAAAAGTCATAAACAAACATAAACTGTAACTTTTTCACATATATCAA-GTCA-TAAACCA
**
8230953 AGTTCAACT-ATTTGGACAAGTTTAATATCATATATTAAAGCTATCTAAACT
321 AGTTCAA-TAATTAAGACAAGTTTAATATCATATATTAAAGCTATCTAAACT
8231004 GAAAAAAATC
Statistics
Matches: 797, Mismatches: 175, Indels: 82
0.76 0.17 0.08
Matches are distributed among these distances:
633 7 0.01
634 102 0.13
635 21 0.03
636 6 0.01
637 105 0.13
638 95 0.12
639 251 0.31
640 8 0.01
641 6 0.01
642 120 0.15
643 4 0.01
647 5 0.01
648 63 0.08
649 4 0.01
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (639 bp):
TAAGTTCAATCATTCAAACAAGTTTAATATTATATATTTAAGCTATCTTAACTATTAAAATAAAA
ATATAATTGCAAAATTACATTTTTGCCTTAACAGTACAAAAAGTCATAAACAAACATAAATGGCA
ACTTTTTCACAAATATCAAGATGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTAT
TTAAACTATCTAAACTATTAAAACAAAAAATAATTGTAAATTACATTTTTACCCTTTAACGGTAA
AAAAAAAGTCATAAACAAACATAAACTGTAACTTTTTCACATATATCAAGTCATAAACCAAGTTC
AATAATTAAGACAAGTTTAATATCATATATTAAAGCTATCTAAACTATTAAAACAAAAATATAAC
TACAACATTATATTTTTACCCTTTAACAATACAAAAGATCCTAAACAAACATAAACAATAATTTT
TTTCACACATATCAATCATGAAAATCAAGCTTAATCATGCCCACAAGTTTAATATCATGTATTGA
AGCTATCTAAAAGTTAAAAATAGATAAATAACTACAAAATTACATTTTTATCCCTTAACACACAA
AAAGTACTAAACAAACTTAAAGAGTAACTTTTTCACACATATAAAGCATGAAAA
Found at i:8231004 original size:479 final size:477
Alignment explanation
Indices: 8229349--8231003 Score: 1553
Period size: 479 Copynumber: 3.4 Consensus size: 477
8229339 CGTTGTAATT
* * * *
8229349 AAGTTCAAACATTCAAACAAGTTTAATATCATATATTTAAGCTATCTAACCTATTAAAATAGAA-
1 AAGTTCAATCATTTAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATAGAAT
* ** * * * *
8229413 ATATAATTACAAAATTACATTTTTGGCCTTTAATGGTACCAAAAGTCATAAACAAACATAAATGG
66 ATATAACT-GTAAATTACATTTTTAGCCTTTAACGGTACAAAAAGTCATAAACAAACATAAATAG
* * * * ** *
8229478 TAATTTTTTCACAAATATCAAGTGTGAAAACCAAGTTCAAACATTCATACAAGTTTAATATCATG
130 TAACTTTTTCACACATATCAAGCGTGAAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATA
* * * * *
8229543 TACTGGAGCTATCTAAACTATTAAAACAAAAACATAATTATAAAATTACATTTTTACCCTTTAAC
195 TATTGAAGCTATCTAAACTATTAAAATAAACA-ATAACTAT-AAATTACATTTTT-CCC-TTAAC
* * * * * * * *
8229608 GACATAAAAAAAAGTCCTAAATAAAGATAAATGACAA-TTTTTT-CACATATATCACTCGTGAAA
256 AACAT----AAAAGTCCTAAACAAATATAAACGATAACTTTTTTACACATATA--AATCATGGAA
* * * *
8229671 ACTAAGTTCAATAATTCAGACAAGTATAATATCATTTATTTAAGCTATCTAAACTGTTAAAATAA
315 ACTAAGTTCAATAATTCAAACAAGTTTAATATCATATATTTAAGCTATCTAAACTGTTAAAACAA
* * * * * * ** * *
8229736 AAATATAACTACAACATTATATTTTTACCCTTTAACAATGCAAATGATCCTAAACAAATATAAAT
380 AAATATAATTGCAAAATTACATTTTTACCCTTTAACAGTACAAAAAATCTTAAACAAACATAAAT
* * *
8229801 AGTAATTTTTTTCACATATATCAATCGTGAAAATC
445 -GTAA-CTTTTTCACATATATCAATCATGAAAACC
**
8229836 AAGCTT-AATCATTTGGACAAGTTTAATATCATGTATTTAAGCTATCTAAA--AGTTAAAAATA-
1 AAG-TTCAATCATTTAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTA-TT-AAAATAG
* * * * * * *
8229897 TATATATAATTGTAAAATTACATTTTTATCCTTTAACAGCACAAAAAGT-ACTAAATAAACTTAA
63 AATATATAACTGT-AAATTACATTTTTAGCCTTTAACGGTACAAAAAGTCA-TAAACAAACATAA
**
8229961 ATAGTAACTTTTTCACACATATCAAGCGTGAAAATGAAGTTCAATCATTCGGACAAGTTTAATAT
126 ATAGTAACTTTTTCACACATATCAAGCGTGAAAACCAAGTTCAATCATTCGGACAAGTTTAATAT
* * ** *
8230026 TATATATTGAAGCTATCTAAACTATTAAAATATAACAATAACTGTAAATT-TGTATTTT---TTG
191 CATATATTGAAGCTATCTAAACTATTAAAATA-AACAATAACTATAAATTACAT-TTTTCCCTTA
* * * * * * *
8230087 ACAGTAGA-AAAAGTCCTAAACAGACT-TAAACCATTACTTTTTCACACATATCAATGATGGAAA
254 ACA--ACATAAAAGTCCTAAACA-AATATAAACGATAACTTTTTTACACATATAAATCATGGAAA
* * *
8230150 CTAAGTTCAATTATTCGAACAAGTTTAATATCATATATTTAAACTATCTAAACTGTTAAAACATA
316 CTAAGTTCAATAATTCAAACAAGTTTAATATCATATATTTAAGCTATCTAAACTGTTAAAACA-A
* * * * * * *
8230215 ACAT-TAATTGCATAACTGCATTTTCACCCTTTAACAGTACAAAAAGT-TATAAGCAAACATAAA
380 AAATATAATTGCAAAATTACATTTTTACCCTTTAACAGTACAAAAAATCT-TAAACAAACATAAA
* * *
8230278 CTATAACTTTTTCATATATATAAATCATGAAAACC
444 -TGTAACTTTTTCACATATATCAATCATGAAAACC
* * * ** * * * *
8230313 AAGTTCAATCATTAAAAGAAGTTTAATATTATGTATTGGAGCTATCTAAATTATTAAAACAAAAC
1 AAGTTCAATCATTTAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATAGAAT
* ** * * * * *
8230378 A-ATAACTGCATAATTGTATTTTTA-CCTTTAACGGTACAAAAAGTCTTAAATAGACATAAACAA
66 ATATAACTGTA-AATTACATTTTTAGCCTTTAACGGTACAAAAAGTCATAAACAAACATAAATAG
* * * * * * ** *
8230441 TAATTTTTTCACACATATCAATCATGAAAACTAAGTTTAATCATGCCCACAAGTTTAATATCATG
130 TAACTTTTTCACACATATCAAGCGTGAAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATA
* * * *
8230506 TATTGGAGCTATCTAAACTGTTACAATAGAACAATAACTACATAATTACATTTTTCCCTTAACAA
195 TATTGAAGCTATCTAAACTATTAAAATA-AACAATAACTATA-AATTACATTTTTCCCTTAACAA
*
8230571 CATAAAAGTCCTAAACAAATATGAACGATAACTTTTTTACACATATAAATCATGGAAACTAAGTT
258 CATAAAAGTCCTAAACAAATATAAACGATAACTTTTTTACACATATAAATCATGGAAACTAAGTT
* ** * * * *
8230636 CAATCATTCTCACAAGTTTAATATTATGTATTTAAGCTATCTTAACTTTTAAAACAAAAATATAA
323 CAATAATTCAAACAAGTTTAATATCATATATTTAAGCTATCTAAACTGTTAAAACAAAAATATAA
* * *
8230701 TTGCAAAATTACATTTTTGCCC-TTAACAGCACAAAAAATCTTAAACAAACATAAATGGCAACTT
388 TTGCAAAATTACATTTTTACCCTTTAACAGTACAAAAAATCTTAAACAAACATAAAT-GTAACTT
* *
8230765 TTTCACATATATCAAGCAT-CAAACC
452 TTTCACATATATCAATCATGAAAACC
* * * * *
8230790 AAGTTCAATCATTTAGACAAGTTCAATATAATGCATTTAACCTATCTAAACTATTAAAATAGAAT
1 AAGTTCAATCATTTAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATAGAAT
* * *
8230855 A-ATAACTGTAAATTATATTTTT-GCCTTTTGACGGTAAAAAAAAAGTCATAAACAAACATAAAC
66 ATATAACTGTAAATTACATTTTTAGCC-TTTAACGGT--ACAAAAAGTCATAAACAAACATAAA-
* *
8230918 T-GTAACTTTTTCACATATATCAAG-GT-ATTAAACCAAGTTCAA-CTATTTGGACAAGTTTAAT
127 TAGTAACTTTTTCACACATATCAAGCGTGA--AAACCAAGTTCAATC-ATTCGGACAAGTTTAAT
*
8230979 ATCATATATTAAAGCTATCTAAACT
189 ATCATATATTGAAGCTATCTAAACT
8231004 GAAAAAAATC
Statistics
Matches: 939, Mismatches: 189, Indels: 88
0.77 0.16 0.07
Matches are distributed among these distances:
476 137 0.15
477 170 0.18
478 191 0.20
479 219 0.23
480 12 0.01
481 4 0.00
483 2 0.00
485 2 0.00
486 13 0.01
487 184 0.20
488 5 0.01
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (477 bp):
AAGTTCAATCATTTAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAATAGAAT
ATATAACTGTAAATTACATTTTTAGCCTTTAACGGTACAAAAAGTCATAAACAAACATAAATAGT
AACTTTTTCACACATATCAAGCGTGAAAACCAAGTTCAATCATTCGGACAAGTTTAATATCATAT
ATTGAAGCTATCTAAACTATTAAAATAAACAATAACTATAAATTACATTTTTCCCTTAACAACAT
AAAAGTCCTAAACAAATATAAACGATAACTTTTTTACACATATAAATCATGGAAACTAAGTTCAA
TAATTCAAACAAGTTTAATATCATATATTTAAGCTATCTAAACTGTTAAAACAAAAATATAATTG
CAAAATTACATTTTTACCCTTTAACAGTACAAAAAATCTTAAACAAACATAAATGTAACTTTTTC
ACATATATCAATCATGAAAACC
Found at i:8232327 original size:17 final size:19
Alignment explanation
Indices: 8232287--8232329 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
8232277 CATGATTAAT
8232287 TTTAGGGTTTGAAGGTTGGC
1 TTTAGGGTTTG-AGGTTGGC
*
8232307 TTTAGGGTTTG-GTTTGG-
1 TTTAGGGTTTGAGGTTGGC
8232324 TTTAGG
1 TTTAGG
8232330 ATTTAGGGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 6 0.27
18 5 0.23
20 11 0.50
ACGTcount: A:0.12, C:0.02, G:0.40, T:0.47
Consensus pattern (19 bp):
TTTAGGGTTTGAGGTTGGC
Found at i:8232407 original size:14 final size:14
Alignment explanation
Indices: 8232390--8232543 Score: 57
Period size: 15 Copynumber: 10.8 Consensus size: 14
8232380 AGGATCAATG
8232390 GTTTAGGGTTTAAA
1 GTTTAGGGTTTAAA
*
8232404 GTTTAAGGTTTATAGAA
1 GTTT-AGGGTT-TA-AA
8232421 GTTTAGGGTTTAAAA
1 GTTTAGGGTTT-AAA
* * * *
8232436 TTTTTGGCTTTTAA
1 GTTTAGGGTTTAAA
* **
8232450 GTTTAGGTTTTAGG
1 GTTTAGGGTTTAAA
*
8232464 GTTTCATAGG----AA
1 GTTT-A-GGGTTTAAA
8232476 -TTTAGGGTTTCAAA
1 GTTTAGGGTTT-AAA
*
8232490 TTTTAGGGTTTCAAA
1 GTTTAGGGTTT-AAA
* *
8232505 TTTTAGGGTTTCAA
1 GTTTAGGGTTTAAA
* * *
8232519 GTTTAAGGCTTCAA
1 GTTTAGGGTTTAAA
*
8232533 GTTTGGGGTTT
1 GTTTAGGGTTT
8232544 CATAAAAAAT
Statistics
Matches: 104, Mismatches: 24, Indels: 24
0.68 0.16 0.16
Matches are distributed among these distances:
9 2 0.02
10 1 0.01
11 3 0.03
14 41 0.39
15 42 0.40
16 9 0.09
17 6 0.06
ACGTcount: A:0.25, C:0.05, G:0.25, T:0.45
Consensus pattern (14 bp):
GTTTAGGGTTTAAA
Found at i:8232496 original size:15 final size:15
Alignment explanation
Indices: 8232457--8232518 Score: 88
Period size: 15 Copynumber: 3.9 Consensus size: 15
8232447 TAAGTTTAGG
8232457 TTTTAGGGTTTCATAGGA
1 TTTTAGGGTTTCA-A--A
*
8232475 ATTTAGGGTTTCAAA
1 TTTTAGGGTTTCAAA
8232490 TTTTAGGGTTTCAAA
1 TTTTAGGGTTTCAAA
8232505 TTTTAGGGTTTCAA
1 TTTTAGGGTTTCAA
8232519 GTTTAAGGCT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
15 29 0.69
17 1 0.02
18 12 0.29
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.45
Consensus pattern (15 bp):
TTTTAGGGTTTCAAA
Found at i:8232507 original size:29 final size:29
Alignment explanation
Indices: 8232474--8232545 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
8232464 GTTTCATAGG
* * *
8232474 AATTTAGGGTTTCAAATTTTAGGGTTTCA
1 AATTTAGGGTTTCAAAGTTTAAGGCTTCA
8232503 AATTTTAGGGTTTC-AAGTTTAAGGCTTCA
1 AA-TTTAGGGTTTCAAAGTTTAAGGCTTCA
* *
8232532 AGTTTGGGGTTTCA
1 AATTTAGGGTTTCA
8232546 TAAAAAATGT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 10 0.28
29 15 0.42
30 11 0.31
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (29 bp):
AATTTAGGGTTTCAAAGTTTAAGGCTTCA
Found at i:8232545 original size:14 final size:14
Alignment explanation
Indices: 8232476--8232545 Score: 77
Period size: 15 Copynumber: 4.9 Consensus size: 14
8232466 TTCATAGGAA
*
8232476 TTTAGGGTTTCAAAT
1 TTTAGGGTTTC-AAG
*
8232491 TTTAGGGTTTCAAAT
1 TTTAGGGTTTC-AAG
8232506 TTTAGGGTTTCAAG
1 TTTAGGGTTTCAAG
* *
8232520 TTTAAGGCTTCAAG
1 TTTAGGGTTTCAAG
*
8232534 TTTGGGGTTTCA
1 TTTAGGGTTTCA
8232546 TAAAAAATGT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
14 23 0.47
15 26 0.53
ACGTcount: A:0.23, C:0.09, G:0.24, T:0.44
Consensus pattern (14 bp):
TTTAGGGTTTCAAG
Found at i:8233627 original size:21 final size:20
Alignment explanation
Indices: 8233601--8233639 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8233591 CAAGCTGAAC
*
8233601 GGATCGATCCCTTTATTCAAG
1 GGATCGATCACTTT-TTCAAG
8233622 GGATCGATCACTTTTTCA
1 GGATCGATCACTTTTTCA
8233640 TACAGAAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (20 bp):
GGATCGATCACTTTTTCAAG
Found at i:8240239 original size:21 final size:21
Alignment explanation
Indices: 8240213--8240263 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
8240203 CAAGCTGAAT
8240213 GGATCGATCCCCTCATTTAAG
1 GGATCGATCCCCTCATTTAAG
8240234 GGATCGATCCCCTCATTTAAG
1 GGATCGATCCCCTCATTTAAG
8240255 GGATCGATC
1 GGATCGATC
8240264 ACTTTTTCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (21 bp):
GGATCGATCCCCTCATTTAAG
Found at i:8240472 original size:75 final size:74
Alignment explanation
Indices: 8240393--8240530 Score: 179
Period size: 75 Copynumber: 1.9 Consensus size: 74
8240383 TGCTCAAACA
** * * * *
8240393 AAAATGTTTCCCAAGTTTGAAAACCTAGAAAAGGGATTGATCC-CTTCTTAAAAGGGATCGATCG
1 AAAATGTTTCCCAAGTTCAAAAACCCAAAAAAAGGATCGATCCTC-TCTT-AAAGGGATCGATCG
8240457 ATTTTTCAGAC
64 ATTTTTCAGAC
* *
8240468 AAAATGTTTCTCTAGTTCAAAAACCCAAAAAAAGGATCGATCCTCTCTTAAAGGGATCGATCG
1 AAAATGTTTCCCAAGTTCAAAAACCCAAAAAAAGGATCGATCCTCTCTTAAAGGGATCGATCG
8240531 GGTAAGGCAA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
74 14 0.26
75 39 0.72
76 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (74 bp):
AAAATGTTTCCCAAGTTCAAAAACCCAAAAAAAGGATCGATCCTCTCTTAAAGGGATCGATCGAT
TTTTCAGAC
Found at i:8242581 original size:10 final size:10
Alignment explanation
Indices: 8242539--8242596 Score: 55
Period size: 10 Copynumber: 5.8 Consensus size: 10
8242529 ATTAATCAAT
*
8242539 TTTGACAAAG
1 TTTGACCAAG
* *
8242549 TTTAACTAAG
1 TTTGACCAAG
*
8242559 TTTGA-TAAGG
1 TTTGACCAA-G
8242569 TTTGACCAAG
1 TTTGACCAAG
*
8242579 TTTGACCAAA
1 TTTGACCAAG
8242589 TTTGACCA
1 TTTGACCA
8242597 TGAGGCTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
9 3 0.07
10 36 0.88
11 2 0.05
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (10 bp):
TTTGACCAAG
Found at i:8243266 original size:33 final size:33
Alignment explanation
Indices: 8243221--8243306 Score: 88
Period size: 33 Copynumber: 2.6 Consensus size: 33
8243211 GAAATAAGGG
*
8243221 CTTCAGATATCACCATCGAATGAAAACAAAAT-A
1 CTTCGGATATCACCATCGAATGAAAAC-AAATGA
* *
8243254 TTTCGGATATCA-C-TGCTGAGTGAAAACAAATGA
1 CTTCGGATATCACCAT-C-GAATGAAAACAAATGA
*
8243287 CTTCGAATATCACCATCGAA
1 CTTCGGATATCACCATCGAA
8243307 GGGAACTCGA
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
31 1 0.02
32 6 0.14
33 32 0.76
34 2 0.05
35 1 0.02
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.24
Consensus pattern (33 bp):
CTTCGGATATCACCATCGAATGAAAACAAATGA
Found at i:8243435 original size:30 final size:31
Alignment explanation
Indices: 8243370--8243450 Score: 112
Period size: 30 Copynumber: 2.6 Consensus size: 31
8243360 AAGAAAATTC
*
8243370 AAACAACTTCGAATATCACCATCGAAAAAAGT
1 AAACAACTTCGAATATCACCATC-AAAAAAAT
*
8243402 AAACGACTTC-AGATATCACCAT-AAAAAAAT
1 AAACAACTTCGA-ATATCACCATCAAAAAAAT
8243432 AAACAACTTCGAATATCAC
1 AAACAACTTCGAATATCAC
8243451 TACCAAGGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
30 23 0.52
31 2 0.05
32 19 0.43
ACGTcount: A:0.51, C:0.22, G:0.07, T:0.20
Consensus pattern (31 bp):
AAACAACTTCGAATATCACCATCAAAAAAAT
Found at i:8243530 original size:68 final size:68
Alignment explanation
Indices: 8243424--8243606 Score: 160
Period size: 68 Copynumber: 2.7 Consensus size: 68
8243414 ATATCACCAT
* * *
8243424 AAAAAAATAAACAACTTCGAATATCACTACCAAGGAGAATTCAAATGACCTCGGATATCAACACA
1 AAAAAAACAAACAACTTCGAATATCACTACCAAGGAGAATTCAAACGACATCGGATATCAACACA
8243489 AAA
66 AAA
* ** * * *
8243492 AAAAAAACAAACAACTTC-ATATATCATTATTGAA-GAGAATTTAAACGACATCGTATATCATCA
1 AAAAAAACAAACAACTTCGA-ATATCACTA-CCAAGGAGAATTCAAACGACATCGGATATCAACA
**
8243555 C--CT
64 CAAAA
* * * * *
8243558 AAGAAAACAAACAACTTTGGATATGACCA-CAAGGGAGAATTCAAACGAC
1 AAAAAAACAAACAACTTCGAATATCACTACCAA-GGAGAATTCAAACGAC
8243607 CTTTGATATC
Statistics
Matches: 91, Mismatches: 19, Indels: 12
0.75 0.16 0.10
Matches are distributed among these distances:
64 2 0.02
66 36 0.40
67 1 0.01
68 50 0.55
69 2 0.02
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.20
Consensus pattern (68 bp):
AAAAAAACAAACAACTTCGAATATCACTACCAAGGAGAATTCAAACGACATCGGATATCAACACA
AAA
Found at i:8243723 original size:33 final size:31
Alignment explanation
Indices: 8243650--8243744 Score: 97
Period size: 33 Copynumber: 3.0 Consensus size: 31
8243640 CACCACCAAG
* *
8243650 TGAAAAC-AACAATTTCAGATATCACCATTAA
1 TGAAAACAAACAATTT-GGATATCACCATGAA
*
8243681 --AAAAAAAACAACTTTGGATATCACCATCGAA
1 TGAAAACAAACAA-TTTGGATATCACCAT-GAA
8243712 TGAAAACAAACAATTTTGGATATCACCACTGAA
1 TGAAAACAAACAA-TTTGGATATCACCA-TGAA
8243745 AAGGACTCGG
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
29 4 0.08
30 16 0.30
31 5 0.09
33 27 0.51
34 1 0.02
ACGTcount: A:0.48, C:0.19, G:0.09, T:0.23
Consensus pattern (31 bp):
TGAAAACAAACAATTTGGATATCACCATGAA
Found at i:8243773 original size:57 final size:58
Alignment explanation
Indices: 8243697--8243859 Score: 179
Period size: 57 Copynumber: 2.9 Consensus size: 58
8243687 AACAACTTTG
* * * * * * * *
8243697 GATATCACCATCGAATGAAAACAAACAATTTTGGATATCACCACTGAAAA-GGACTCG
1 GATATCACCACCCAGTGAAAATAAACAACTTTGAATATCACCACTCAAAAGGGACTCA
* ** * *
8243754 GATATCATCACCCAGTGAAAATAAACAACTTCAAAAATCACCA-TCAAAAGGGACTTA
1 GATATCACCACCCAGTGAAAATAAACAACTTTGAATATCACCACTCAAAAGGGACTCA
*
8243811 GATATCACCACCGAGTGAAAATAAACAACTTTGAATATCACCAC-CAAAA
1 GATATCACCACCCAGTGAAAATAAACAACTTTGAATATCACCACTCAAAA
8243860 ATAATTCAAA
Statistics
Matches: 86, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
56 5 0.06
57 81 0.94
ACGTcount: A:0.45, C:0.23, G:0.12, T:0.20
Consensus pattern (58 bp):
GATATCACCACCCAGTGAAAATAAACAACTTTGAATATCACCACTCAAAAGGGACTCA
Found at i:8244051 original size:11 final size:11
Alignment explanation
Indices: 8244035--8244067 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
8244025 GATATCACCA
8244035 TTAAGAAAGTT
1 TTAAGAAAGTT
8244046 TTAAGAAAGTT
1 TTAAGAAAGTT
8244057 TTAAGAAAGTT
1 TTAAGAAAGTT
8244068 CAAAATTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.36
Consensus pattern (11 bp):
TTAAGAAAGTT
Found at i:8246880 original size:15 final size:14
Alignment explanation
Indices: 8246860--8246898 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
8246850 AAAAGTTTCG
8246860 TTTTTTT-TTCTTAT
1 TTTTTTTCTTC-TAT
8246874 TTTTTTTCTTCTA-
1 TTTTTTTCTTCTAT
8246887 TTTTTTTCTTCT
1 TTTTTTTCTTCT
8246899 TTGAATGCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 12 0.50
14 9 0.38
15 3 0.12
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTTCTTCTAT
Found at i:8246897 original size:13 final size:12
Alignment explanation
Indices: 8246861--8246900 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
8246851 AAAGTTTCGT
*
8246861 TTTTTTTTCTTA
1 TTTTTTTTCTTC
8246873 TTTTTTTTCTTC
1 TTTTTTTTCTTC
8246885 TATTTTTTTCTTC
1 T-TTTTTTTCTTC
8246898 TTT
1 TTT
8246901 GAATGCCCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 14 0.54
13 12 0.46
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTTTTTTCTTC
Found at i:8247510 original size:36 final size:36
Alignment explanation
Indices: 8247461--8247535 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
8247451 TGTGGAAGTA
* * * *
8247461 TTTGATGAATTCATTTCTAGTAGTGAATGTTGTCTC
1 TTTGATGAATTCATTTCTAATACTGAATGCTATCTC
*
8247497 TTTGATGAGTTCATTTCTAATACTGAATGCTATCTC
1 TTTGATGAATTCATTTCTAATACTGAATGCTATCTC
8247533 TTT
1 TTT
8247536 TGAGACTCCC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.23, C:0.13, G:0.16, T:0.48
Consensus pattern (36 bp):
TTTGATGAATTCATTTCTAATACTGAATGCTATCTC
Found at i:8247587 original size:10 final size:10
Alignment explanation
Indices: 8247572--8247605 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
8247562 AAGAAACTTC
8247572 TTTTTCTTTT
1 TTTTTCTTTT
8247582 TTTTTCTTTT
1 TTTTTCTTTT
*
8247592 TTTCTCTTTT
1 TTTTTCTTTT
8247602 TTTT
1 TTTT
8247606 AAGGCATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:8248675 original size:144 final size:142
Alignment explanation
Indices: 8248295--8248696 Score: 459
Period size: 144 Copynumber: 2.8 Consensus size: 142
8248285 TAAAAGTACT
* *
8248295 AAAATACCCTTTAGGGATATTTTCATAATTTGGCCTTTCCAAACTCAAATTTTCATGAAATTTTT
1 AAAATACCCTTTAGGG-TATTTTCATAATTTGGCCTTTCCAAGCTC-GATTTTCATGAAATTTTT
* * * * * * ** *
8248360 TAAATCTTAATTTCATAATATTTTAAGGATTTTTGGTGTATTTGAAATCGTAGCAACACCCTTAA
64 CATATCTTAATTTCATAATA-TTTCATGATTTTTCGTGCATTTGAAATCACAGCAACACCCTCAA
*
8248425 AGGTGTGAAATTATC
128 AGGTGTGAAACTATC
* ** * *
8248440 AAAATACCGCTTTAGAGATATTTTTGTAATTTGGCC-TTCCTAAGCTCGAATTTTTATGAAACTT
1 AAAATACC-CTTTAG-GGTATTTTCATAATTTGGCCTTTCC-AAGCTCG-ATTTTCATGAAATTT
*
8248504 TTCATATCTTAATTTCATAATATTTCATGATTTTTCGTGCATTTGAAATCACAGCAATA-CCTCA
62 TTCATATCTTAATTTCATAATATTTCATGATTTTTCGTGCATTTGAAATCACAGCAACACCCTCA
8248568 AGAGGTGTGAAACTATC
127 A-AGGTGTGAAACTATC
* * * *
8248585 AAAATACCCTTTAAGGGTGTTTTCATAGTTTGACCTTTCCGAGCTTCGATTTTCATGAAATTTTT
1 AAAATACCCTTT-AGGGTATTTTCATAATTTGGCCTTTCCAAGC-TCGATTTTCATGAAATTTTT
* * * *
8248650 CATATCTCAATTTTATAATATTTCATGATTTTTTGTGC-TTTAAAATC
64 CATATCTTAATTTCATAATATTTCATGATTTTTCGTGCATTTGAAATC
8248697 TAAAAAATGA
Statistics
Matches: 218, Mismatches: 31, Indels: 18
0.82 0.12 0.07
Matches are distributed among these distances:
143 8 0.04
144 76 0.35
145 73 0.33
146 60 0.28
147 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (142 bp):
AAAATACCCTTTAGGGTATTTTCATAATTTGGCCTTTCCAAGCTCGATTTTCATGAAATTTTTCA
TATCTTAATTTCATAATATTTCATGATTTTTCGTGCATTTGAAATCACAGCAACACCCTCAAAGG
TGTGAAACTATC
Found at i:8252722 original size:37 final size:37
Alignment explanation
Indices: 8252681--8252766 Score: 91
Period size: 37 Copynumber: 2.3 Consensus size: 37
8252671 TAATGAGGTG
* * * * *
8252681 GAATGCATATGCTACCTATAAAGATGTGCATGAGATA
1 GAATGCATATACCACCTATAAACATATGCATGAAATA
* * * *
8252718 GAATGTATGTACCATCTATTAACATATGCATGAAATA
1 GAATGCATATACCACCTATAAACATATGCATGAAATA
8252755 GAATGCATATAC
1 GAATGCATATAC
8252767 TATTTATTAA
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (37 bp):
GAATGCATATACCACCTATAAACATATGCATGAAATA
Found at i:8253958 original size:16 final size:16
Alignment explanation
Indices: 8253937--8253981 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
8253927 TCAAAACATT
*
8253937 TTTTTATTTTTTTCCA
1 TTTTTATTTTTTTCAA
*
8253953 TTTTTATTTTTTTGAA
1 TTTTTATTTTTTTCAA
8253969 TTTTTCATTTTTT
1 TTTTT-ATTTTTT
8253982 GGAAAAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
16 19 0.73
17 7 0.27
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (16 bp):
TTTTTATTTTTTTCAA
Found at i:8254007 original size:76 final size:74
Alignment explanation
Indices: 8253886--8254026 Score: 198
Period size: 76 Copynumber: 1.9 Consensus size: 74
8253876 GTTTTTTAAT
*
8253886 TTTTTTTGAATTTTTGCTTTTTGAAAACAAGAAAATTGAAATCAAAACATT-TTTTTATTTTTTT
1 TTTTTTTGAATTTTTGCTTTTTGAAAACAAGAAAATTGAAATCAAAACATTGTTTTCATTTTTTT
8253950 CCATTTTTA
66 CCATTTTTA
*
8253959 TTTTTTTGAATTTTT-CATTTTTTGGAAAAACAAGATAATT-AAATTCAAAACATTGTTTTCATT
1 TTTTTTTGAATTTTTGC--TTTTT-G-AAAACAAGAAAATTGAAA-TCAAAACATTGTTTTCATT
8254022 TTTTT
61 TTTTT
8254027 TAATTTTTTT
Statistics
Matches: 60, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
72 1 0.02
73 15 0.25
74 5 0.08
75 4 0.07
76 23 0.38
77 12 0.20
ACGTcount: A:0.32, C:0.08, G:0.07, T:0.53
Consensus pattern (74 bp):
TTTTTTTGAATTTTTGCTTTTTGAAAACAAGAAAATTGAAATCAAAACATTGTTTTCATTTTTTT
CCATTTTTA
Found at i:8256567 original size:23 final size:23
Alignment explanation
Indices: 8256541--8256584 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
8256531 TTATTTCTTT
8256541 TTTA-TGATGTTGTCATTTGTTCA
1 TTTAGTGATGTTG-CATTTGTTCA
* *
8256564 TTTAGTTATGTTGCTTTTGTT
1 TTTAGTGATGTTGCATTTGTT
8256585 ATCCTTGTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.14, C:0.07, G:0.18, T:0.61
Consensus pattern (23 bp):
TTTAGTGATGTTGCATTTGTTCA
Found at i:8257529 original size:15 final size:16
Alignment explanation
Indices: 8257504--8257533 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8257494 TGTAAAGGAA
8257504 AAAAGAGAATAAAAAG
1 AAAAGAGAATAAAAAG
8257520 AAAA-AGAATAAAAA
1 AAAAGAGAATAAAAA
8257534 ATGTAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (16 bp):
AAAAGAGAATAAAAAG
Found at i:8260320 original size:25 final size:24
Alignment explanation
Indices: 8260291--8260344 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
8260281 TTAGCCATTG
* *
8260291 TTTTTATATAT-TTGTCTAGTTTACC
1 TTTTTATACATGTTG-CAAGTTTA-C
8260316 TTTTT-TACATGTTGCAAGTTTAC
1 TTTTTATACATGTTGCAAGTTTAC
8260339 TTTTTA
1 TTTTTA
8260345 CTAGAATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 6 0.24
24 11 0.44
25 8 0.32
ACGTcount: A:0.20, C:0.11, G:0.09, T:0.59
Consensus pattern (24 bp):
TTTTTATACATGTTGCAAGTTTAC
Found at i:8267475 original size:18 final size:20
Alignment explanation
Indices: 8267441--8267481 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
8267431 AGGAGAGTTT
*
8267441 CTTTATTCTTTTCTTTTGTG
1 CTTTATTCTTTTCTTTTATG
8267461 CTTTATT-TTTT-TTTTATG
1 CTTTATTCTTTTCTTTTATG
8267479 CTT
1 CTT
8267482 GTACATTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 4 0.20
20 7 0.35
ACGTcount: A:0.07, C:0.12, G:0.07, T:0.73
Consensus pattern (20 bp):
CTTTATTCTTTTCTTTTATG
Found at i:8277081 original size:20 final size:21
Alignment explanation
Indices: 8277053--8277096 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
8277043 TATGTTCCGT
8277053 AAGAGAGTAGTTTTGTGAATAA
1 AAGAGA-TAGTTTTGTGAATAA
8277075 AAGAGTATAGTTTTGTGAATAA
1 AAGAG-ATAGTTTTGTGAATAA
8277097 CTGATCTGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.41, C:0.00, G:0.25, T:0.34
Consensus pattern (21 bp):
AAGAGATAGTTTTGTGAATAA
Found at i:8282909 original size:23 final size:22
Alignment explanation
Indices: 8282883--8282935 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
8282873 TTTTTGATTG
*
8282883 AATTATTTTTTATT-TATAATAAT
1 AATTATTTTATATTGT-TAAT-AT
* *
8282906 AATTCTTTTATATTGTTAATTT
1 AATTATTTTATATTGTTAATAT
8282928 AATTATTT
1 AATTATTT
8282936 ATGTTAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 8 0.32
23 16 0.64
24 1 0.04
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (22 bp):
AATTATTTTATATTGTTAATAT
Found at i:8283373 original size:20 final size:19
Alignment explanation
Indices: 8283350--8283410 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
8283340 TTATTCTCAC
8283350 TTTTTTATTTTAATACTTA
1 TTTTTTATTTTAATACTTA
8283369 TTTTTTA-TTTAGA-A-TTA
1 TTTTTTATTTTA-ATACTTA
*
8283386 -TTTTTATTTATAATACTAA
1 TTTTTTATTT-TAATACTTA
8283405 TTTTTT
1 TTTTTT
8283411 TACATTACAA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
16 6 0.17
17 6 0.17
18 8 0.23
19 10 0.29
20 5 0.14
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTTTATTTTAATACTTA
Found at i:8283879 original size:20 final size:20
Alignment explanation
Indices: 8283814--8283885 Score: 58
Period size: 20 Copynumber: 3.5 Consensus size: 20
8283804 GGTTTAGAAT
*
8283814 TATTATTTAT-TGATAATAA
1 TATTATTTATGTTATAATAA
* *
8283833 TAATTCTTTTATGTTGCTCAA-AA
1 T-ATT-ATTTATGTT-AT-AATAA
8283856 TATTATTTATGTTATAATAA
1 TATTATTTATGTTATAATAA
*
8283876 TATTTTTTAT
1 TATTATTTAT
8283886 AATTGTTTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
19 3 0.07
20 15 0.37
21 13 0.32
22 4 0.10
23 4 0.10
24 2 0.05
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (20 bp):
TATTATTTATGTTATAATAA
Found at i:8283953 original size:218 final size:213
Alignment explanation
Indices: 8283339--8283954 Score: 568
Period size: 218 Copynumber: 2.9 Consensus size: 213
8283329 TAATTTTACA
* * * * * *
8283339 ATTATTCTCACTTTTTTATTTTAATACTTATTTTTTATTTAGAATTATTTTTATTTATAATACTA
1 ATTATTTTCACTTTTTTATATTAACACTTATTTTTTGTTTAGAATTATTTTTATTGATAATAATA
* * * *
8283404 ATTTTTTTACATTAC-AAAT-TTA-TTACGTT-TCAATAATATCTTTTTACATTTATTTTTA-TT
66 ATTTTTTTACATTTCAAAATATTATTTATGTTAT-AATAATAT-TTTTTATAATTA-TTTTACTT
* * * * * *
8283464 TTTAATTAAATTTAAAATTATTACAATTTTTTTTTAAGTGTA--ATGATATTTCTAACCATTTTA
128 TTT-ATTAAGTTTAAAATTATCATAAATTTTTATTAAG-GTATTATGATACTTCTAACCATTTTA
8283527 TGTAAAATAATACCTAATTTATG
191 TGTAAAATAATACCTAATTTATG
* ** * *
8283550 ATTATTTTTACCATTTTATGTTAACTCTTATTTTTTGTTTA-AATTATTTTTTATTTG-TAATAA
1 ATTATTTTCACTTTTTTATATTAACACTTATTTTTTGTTTAGAATTA-TTTTTA-TTGATAATAA
* ** * *
8283613 TATTTTTTTTACATTTTCAACTTAATTATTTATGTTATAATAATATTTTTTTATACTTCTTGTTA
64 TAATTTTTTTACA-TTTCAAAAT-ATTATTTATGTTATAATAATA-TTTTTTATAATTATT-TTA
* ** * * * * * *
8283678 CCTTTTATTAAGTTTAGGAGTATCATAACTTTTTCTTAAAAGTGTTATAATACTTCTAACCATTT
125 CTTTTTATTAAGTTTAAAATTATCATAAATTTTTATT-AAGGTATTATGATACTTCTAACCATTT
* * ** *
8283743 TATGTCAAATGATTTC-AATTTTTTG
189 TATGTAAAATAATACCTAA-TTTATG
*
8283768 ATTATTTTCACTTTTTTATATTAACACTTATTTTTGGGTTTAGAATTATTATTTATTGATAATAA
1 ATTATTTTCACTTTTTTATATTAACACTTATTTTT-TGTTTAGAATTATT-TTTATTGATAATAA
* ** *
8283833 TAATTCTTTTATGTTGCTCAAAATATTATTTATGTTATAATAATATTTTTTATAATTGTTTCTAC
64 TAATTTTTTTACATT--TCAAAATATTATTTATGTTATAATAATATTTTTTATAATTATTT-TAC
* * *
8283898 TTTTTATTATGTTTAAAATTATCATAAATTTTTATTAAGGTATTCTGACACTTCTAA
126 TTTTTATTAAGTTTAAAATTATCATAAATTTTTATTAAGGTATTATGATACTTCTAA
8283955 TCTAATTTTC
Statistics
Matches: 321, Mismatches: 62, Indels: 37
0.76 0.15 0.09
Matches are distributed among these distances:
210 5 0.02
211 56 0.17
212 5 0.02
213 2 0.01
215 5 0.02
216 50 0.16
217 10 0.03
218 81 0.25
219 57 0.18
220 45 0.14
221 5 0.02
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.55
Consensus pattern (213 bp):
ATTATTTTCACTTTTTTATATTAACACTTATTTTTTGTTTAGAATTATTTTTATTGATAATAATA
ATTTTTTTACATTTCAAAATATTATTTATGTTATAATAATATTTTTTATAATTATTTTACTTTTT
ATTAAGTTTAAAATTATCATAAATTTTTATTAAGGTATTATGATACTTCTAACCATTTTATGTAA
AATAATACCTAATTTATG
Found at i:8285194 original size:894 final size:894
Alignment explanation
Indices: 8283400--8285203 Score: 1980
Period size: 899 Copynumber: 2.0 Consensus size: 894
8283390 TATTTATAAT
* * *
8283400 ACTAATTTTTTTACATTACAAATTTATTACGTTTCAATAATATCTTTTTACATTTATTTTTATTT
1 ACTAATTTTTTTACATTACAAATTTATTACATTTCAATAATATCTTTTTACATTTATTATTACTT
* ** * **
8283465 TTAATTAAATTTAAAATTATTACAATTTTTTTTTAAGTGTAATGATATTTCTAACCATTTTATGT
66 TTAATTAAATTTAAAATTATTACAATTTTTTTTAAAGTGTAACAATACTTCTAACCATTTTACAT
* * * * **
8283530 AAAATAATACCTAATTTATGATTATTTTTACCATTTTATGTTAACTCTTATTTTTTGTTTAAATT
131 AAAACAATACCTAATTTATGATTATTTTTACC---TGATGCTAACTCTTACTTTTAATTTAAATT
* * **
8283595 ATTTTTTATTTGTAATAATATTTTTTTTACATTTTCAACTTAATTATTTATGTTATAATAATATT
193 ATTTTTTATTTGTAATAATAGTTCTTTTACATTGCCAACTTAATTATTTATGTTATAATAATATT
* * * ** *
8283660 TTTTTATACTTCTTGTTACCTTTTATTAAGTTTAGGAGTATCATAACTTTTTCTTAAAAGTGTTA
258 TTTTTACACTTCTTATTACCTTTTATTAAGTTGAAAAGTATCACAACTTTTTCTTAAAAGTGTTA
* * * * * * *
8283725 TAATACTTCTAACCATTTTATGTCAAATGATTTCAATTTTTTGATTATTTTCACTTTTTTATATT
323 TAATACTTCTAACCATTTTATGTCAAATGAATACAAATTTATGATTATTCTCACTTTTTTACACT
* * **
8283790 AACACTTATTTTTGGGTTTAGAATTATTATTTATTGATAATAATAATTCTTTTATGTTGCTCAAA
388 AACACTTATTTTTGGATTTAGAATTATTAATTATTGATAATAATAATTCTTTTACATTGCTCAAA
* * * ***
8283855 ATATTATTTATGTTATAATAATATTTTTTATAATTGTTTCTACTTTTTATTATGTTTAAAATTAT
453 ATATTATTTATGTTACAACAATATTTTTTACAATTGTTTCTACTTTTTATTACACTTAAAATTAT
* * * *
8283920 CATAAATTTTTATTAAGGTATTCTGACACTTCTAATCTAATTTTCACAAAATGACACCAATTTTA
518 CACAAATCTTTATTAAGGTATTCTAACAATTCTAATCTAATTTTCACAAAATGACACCAATTTTA
* * * * * * * *
8283985 TAATTATTCTTATCATTTTATGTTATGACATTGTAATATATTTTACTCCAAATGATTCTAATTTT
583 CAACTATTCTTATCATTTTACGTTACGACATTCTAACATACTTTACTCAAAATGATTCTAATTTT
* * * * *
8284050 TTAGTTATTCTTACATTTTTACATTAACACACATTTTTTTTTTTGTTTAGAATTACTTTTTATTT
648 CTACTTACTCTCACATTTTTACATTAACACAC---TTTTTTTTTGTTTAAAATTACTTTTTATTT
** * *
8284115 ATAATAATATTTTTTTTAATGTTATCAACTTATATTTACATTACAATAAAATCTTTTACACTTGT
710 ATAATAATAGATTTTTTAATATTATCAACTTATATTTACATTACAATAAAATATTTTACACTTGT
* ** * * *
8284180 TCTTATCTTTTATTATGTTTAAAATTATCACAAGTTTTTCTTAAGGTATTACGACACTTCTAATA
775 TCTTATCTTTTAATACATTTAAAATTATCACAACTTTTTCTTAAGGTATTACGACACTTCCAACA
* * *
8284245 TATTTTACACCAAATGATATCAATTTTATGATTATTCTTACTATTTTACGTTAAC
840 TATTTTACACAAAATGATATCAATTTTACGATTATTCTTACTATGTTACGTTAAC
* * * * *
8284300 ACTAATTTTTTTACGTTACCAATTTATTATATTTCAATAATATCTTTTTATATTTGTTATTACTT
1 ACTAATTTTTTTACATTACAAATTTATTACATTTCAATAATATCTTTTTACATTTATTATTACTT
* ** * * *
8284365 TTCATTACGTTTAAATTTATTGCAATATTTTTTTAAAAGTGTAACAATACTTCTAACTATTTTAC
66 TTAATTAAATTTAAAATTATTACAAT-TTTTTTT-AAAGTGTAACAATACTTCTAACCATTTTAC
* *
8284430 ATTAAACAATATC-AATTTTATGATTATTTTTA-C-GAT-CTAACTCTTAACTTTTAATTTAAAA
129 ATAAAACAATACCTAA-TTTATGATTATTTTTACCTGATGCTAACTCTT-ACTTTTAATTT-AAA
* *
8284491 TTATTATTTTGTTTGTAATAATAGTTCTTTTATATTGCCAACTTAATTATTTATGTTATAATAAT
191 TTATT-TTTTATTTGTAATAATAGTTCTTTTACATTGCCAACTTAATTATTTATGTTATAATAAT
* * * * *
8284556 ATTTTTTTGCATTTGTTATTACCTTTTATTACGTTGAAAAGTATTACAACTTTTGTCTTAAAAGT
255 ATTTTTTTACACTTCTTATTACCTTTTATTAAGTTGAAAAGTATCACAACTTTT-TCTTAAAAGT
* * * * *
8284621 GTTATGATACTTTTTACTATTTTATG-CTAAAT-AATACAAAATTTATGATTATTCTCGCTTTTT
319 GTTATAATACTTCTAACCATTTTATGTC-AAATGAATAC-AAATTTATGATTATTCTCACTTTTT
* ** *
8284684 TGACACTAATACTTATTTTTTTATTTAGAATTGTTAATTATTTG-TAATAATAATT-TTTTACAT
382 T-ACACTAACACTTATTTTTGGATTTAGAATTATTAATTA-TTGATAATAATAATTCTTTTACAT
* * *
8284747 TG-TCAAAAATATT-TTTATGTTACAACAATATTTTTTACACTTGTTTTTGCTTTTTATTACACT
445 TGCTC-AAAATATTATTTATGTTACAACAATATTTTTTACAATTGTTTCTACTTTTTATTACACT
** * * * * * * *
8284810 TAAGTTTATCACAACTCTTTGTTAAGGTGTTAC-AATAATTCTAATTTAATTTAT-ACCAAGTGA
509 TAAAATTATCACAAATCTTTATTAAGGTATT-CTAACAATTCTAATCTAATTT-TCACAAAATGA
* * **
8284873 CATCAATTTTACAACTATTTTTATTTTTTTACGTTACGACACTTCTAACATACTTTA-TACAAAA
572 CACCAATTTTACAACTATTCTTATCATTTTACGTTACGACA-TTCTAACATACTTTACT-CAAAA
* * **
8284937 TTATTCTAATTTTACT-CTTACTCTCACTTTTTTATGTT-A-ACAC-TTTTTTTTGTTTAAAATT
635 TGATTCTAATTTT-CTACTTACTCTCACATTTTTACATTAACACACTTTTTTTTTGTTTAAAATT
* * * * *
8284998 ATTTTTTATTTATAATAATAGATTTTTT-ATATTGTCAACTTA-ATTATTACTTTATAATAATAT
699 ACTTTTTATTTATAATAATAGATTTTTTAATATTATCAACTTATA-T-TTACATTACAATAAAAT
* *
8285061 ATTTTA-AGCTTGTTCTTATCTTTTAATACATTTAAAATTATTATAACTTTTTCTTAAGGTATTA
762 ATTTTACA-CTTGTTCTTATCTTTTAATACATTTAAAATTATCACAACTTTTTCTTAAGGTATTA
* * * * * *
8285125 TGACATTTCCAACATATTTTACGCTAAAAT-ATATTAATTTTACGATTATTTTTA-TATAGTTAT
826 CGACACTTCCAACATATTTTACAC-AAAATGATATCAATTTTACGATTATTCTTACTAT-GTTAC
8285188 GTTAAC
889 GTTAAC
8285194 ACCT-ATTTTT
1 A-CTAATTTTT
8285204 GGTGTAAGAT
Statistics
Matches: 747, Mismatches: 134, Indels: 52
0.80 0.14 0.06
Matches are distributed among these distances:
892 1 0.00
893 17 0.02
894 167 0.22
895 6 0.01
896 8 0.01
897 10 0.01
898 12 0.02
899 224 0.30
900 198 0.27
901 52 0.07
902 52 0.07
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.52
Consensus pattern (894 bp):
ACTAATTTTTTTACATTACAAATTTATTACATTTCAATAATATCTTTTTACATTTATTATTACTT
TTAATTAAATTTAAAATTATTACAATTTTTTTTAAAGTGTAACAATACTTCTAACCATTTTACAT
AAAACAATACCTAATTTATGATTATTTTTACCTGATGCTAACTCTTACTTTTAATTTAAATTATT
TTTTATTTGTAATAATAGTTCTTTTACATTGCCAACTTAATTATTTATGTTATAATAATATTTTT
TTACACTTCTTATTACCTTTTATTAAGTTGAAAAGTATCACAACTTTTTCTTAAAAGTGTTATAA
TACTTCTAACCATTTTATGTCAAATGAATACAAATTTATGATTATTCTCACTTTTTTACACTAAC
ACTTATTTTTGGATTTAGAATTATTAATTATTGATAATAATAATTCTTTTACATTGCTCAAAATA
TTATTTATGTTACAACAATATTTTTTACAATTGTTTCTACTTTTTATTACACTTAAAATTATCAC
AAATCTTTATTAAGGTATTCTAACAATTCTAATCTAATTTTCACAAAATGACACCAATTTTACAA
CTATTCTTATCATTTTACGTTACGACATTCTAACATACTTTACTCAAAATGATTCTAATTTTCTA
CTTACTCTCACATTTTTACATTAACACACTTTTTTTTTGTTTAAAATTACTTTTTATTTATAATA
ATAGATTTTTTAATATTATCAACTTATATTTACATTACAATAAAATATTTTACACTTGTTCTTAT
CTTTTAATACATTTAAAATTATCACAACTTTTTCTTAAGGTATTACGACACTTCCAACATATTTT
ACACAAAATGATATCAATTTTACGATTATTCTTACTATGTTACGTTAAC
Found at i:8285337 original size:217 final size:215
Alignment explanation
Indices: 8284968--8285501 Score: 470
Period size: 217 Copynumber: 2.5 Consensus size: 215
8284958 TCTCACTTTT
* * * * * *
8284968 TTATGTTAACACTTTTTTTTGTTTAAAATTATTTTTTATTTATAATAATAGATTTTTTATATTGT
1 TTATGTTAACACTATTTTTGGTGTAAAATTATTTTTTATTTATAATAATAAATTTTTCATATTGC
** *
8285033 CAACTTAATTATTACTTTATAATAATATATTTTAAGCTTGTTCTTATCTTTTAATACATTTAAAA
66 CAACTTAATTATTACTTTATAATAATATATTTTAAGCTCATTATTATCTTTTAATACATTTAAAA
* * * * *
8285098 TTATTATAACTTTTTCTTAAGGTATTATGACATTTCCAACATATTTTACGCTAAAAT-ATATTAA
131 TTATCACAACTTTTTCTTAAGGTATAACGACATTTCCAAC-CATTTTACG-TAAAATAATATTAA
*
8285162 TTTTACGATTATTTTTATATAG
194 TTTTACGACTATTTTTATATAG
* * *
8285184 TTATGTTAACACCTATTTTTGGTGTAAGATTATTTTTTATTTATAATACTAAATTTTTCGT-TT-
1 TTATGTTAACA-CTATTTTTGGTGTAAAATTATTTTTTATTTATAATAATAAATTTTTCATATTG
* * * *
8285247 CCAATTTAATTATTTAAGTTT-TAATAATATTTTTTTACA-CTCATTATTAT-TTTTCATTACAT
65 CCAACTTAATTA-TT-ACTTTATAATAATA-TATTTTA-AGCTCATTATTATCTTTT-AATACAT
* * * * ** *
8285309 TTAGAATTATCACAA-TATTTTTTTAAGGTGTAACGATATTTGTAACCATTTTACGTCAAATAAT
125 TTAAAATTATCACAACT-TTTTCTTAAGGTATAACGACATTTCCAACCATTTTACGTAAAATAAT
* **
8285373 ATTAATTTTACGACTATTTTTAGTTTTT
189 ATTAATTTTACGACTATTTTTA-TATAG
** ** * * * * ** * *
8285401 TTACATTAACTTTTATTTTTTTGTTTAAAATTATTTTTTATTTGTAATATTATTTTTTTTACATT
1 TTATGTTAAC-ACTA-TTTTTGGTGTAAAATTATTTTTTATTTATAATAATAAATTTTTCATATT
* ** *
8285466 ACCAACTTAATTATTTTTGTTACAATAATATATTTT
64 GCCAACTTAATTATTACT-TTATAATAATATATTTT
8285502 TATGCCTGTT
Statistics
Matches: 252, Mismatches: 51, Indels: 27
0.76 0.15 0.08
Matches are distributed among these distances:
215 15 0.06
216 59 0.23
217 111 0.44
218 38 0.15
219 11 0.04
220 18 0.07
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.54
Consensus pattern (215 bp):
TTATGTTAACACTATTTTTGGTGTAAAATTATTTTTTATTTATAATAATAAATTTTTCATATTGC
CAACTTAATTATTACTTTATAATAATATATTTTAAGCTCATTATTATCTTTTAATACATTTAAAA
TTATCACAACTTTTTCTTAAGGTATAACGACATTTCCAACCATTTTACGTAAAATAATATTAATT
TTACGACTATTTTTATATAG
Found at i:8285438 original size:19 final size:18
Alignment explanation
Indices: 8285413--8285460 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
8285403 ACATTAACTT
8285413 TTATTTTTTTGTT-TAAAA
1 TTATTTTTTT-TTGTAAAA
*
8285431 TTATTTTTTATTTGTAATA
1 TTATTTTTT-TTTGTAAAA
8285450 TTATTTTTTTT
1 TTATTTTTTTT
8285461 ACATTACCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (18 bp):
TTATTTTTTTTTGTAAAA
Found at i:8287859 original size:21 final size:20
Alignment explanation
Indices: 8287819--8287860 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
8287809 ATATTAATAA
*
8287819 TTAAAATTGAAATTTCAAAT
1 TTAAAATTGAAATTACAAAT
*
8287839 TTAAAATTAGAAATTAGAAAT
1 TTAAAATT-GAAATTACAAAT
8287860 T
1 T
8287861 AATTTTATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.38
Consensus pattern (20 bp):
TTAAAATTGAAATTACAAAT
Found at i:8287862 original size:20 final size:19
Alignment explanation
Indices: 8287817--8287862 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
8287807 TTATATTAAT
*
8287817 AATTAAAATTGAAATTTCA
1 AATTAAAATTGAAATTACA
*
8287836 AATTTAAAATTAGAAATTAGA
1 AA-TTAAAATT-GAAATTACA
8287857 AATTAA
1 AATTAA
8287863 TTTTATCTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 12 0.52
21 9 0.39
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.35
Consensus pattern (19 bp):
AATTAAAATTGAAATTACA
Found at i:8288658 original size:10 final size:10
Alignment explanation
Indices: 8288645--8288669 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8288635 ATAACTATAT
8288645 ATATAATTAC
1 ATATAATTAC
8288655 ATATAATTAC
1 ATATAATTAC
8288665 ATATA
1 ATATA
8288670 TGCATATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATAATTAC
Found at i:8288668 original size:22 final size:23
Alignment explanation
Indices: 8288625--8288670 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
8288615 ATAAAATTTT
* *
8288625 TAATTATATTATAACTATATATA
1 TAATTACATTATAACTACATATA
*
8288648 TAATTACA-TATAATTACATATA
1 TAATTACATTATAACTACATATA
8288670 T
1 T
8288671 GCATATCTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.46
Consensus pattern (23 bp):
TAATTACATTATAACTACATATA
Found at i:8289439 original size:26 final size:26
Alignment explanation
Indices: 8289410--8289466 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
8289400 TCTTATTCAC
*
8289410 TTCATAAATGAAATATTATCATCTAA
1 TTCACAAATGAAATATTATCATCTAA
*
8289436 TTCACAAATGAAATGTTATCATCTAA
1 TTCACAAATGAAATATTATCATCTAA
8289462 TTCAC
1 TTCAC
8289467 TGACAGCATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (26 bp):
TTCACAAATGAAATATTATCATCTAA
Found at i:8289970 original size:13 final size:13
Alignment explanation
Indices: 8289952--8289980 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
8289942 AGAATAGGTT
8289952 CAGGTCTACTAAC
1 CAGGTCTACTAAC
8289965 CAGGTCTACTAAC
1 CAGGTCTACTAAC
8289978 CAG
1 CAG
8289981 AACAGGGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (13 bp):
CAGGTCTACTAAC
Found at i:8290789 original size:18 final size:18
Alignment explanation
Indices: 8290765--8290813 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
8290755 TTTTATTTTG
8290765 ATAAAATAAA-AAA-AACA
1 ATAAAATAAATAAATAA-A
8290782 AGTAAAATAAATAAATAAA
1 A-TAAAATAAATAAATAAA
8290801 ATAAAATAAATAA
1 ATAAAATAAATAA
8290814 GAAAATATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.03
18 21 0.72
19 5 0.17
20 2 0.07
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (18 bp):
ATAAAATAAATAAATAAA
Found at i:8291653 original size:31 final size:31
Alignment explanation
Indices: 8291616--8291744 Score: 83
Period size: 28 Copynumber: 4.2 Consensus size: 31
8291606 AATTAGATAC
8291616 ATAAAAGAAATAGATAAATAATAATAAAAAA
1 ATAAAAGAAATAGATAAATAATAATAAAAAA
* *
8291647 ATAAAAG---CAGATAAATAAT-A-AAAATA
1 ATAAAAGAAATAGATAAATAATAATAAAAAA
* * * *
8291673 TTAATAGATAA-A-AAAAATAAAAATAAAAATA
1 ATAAAAGA-AATAGATAAATAATAATAAAAA-A
* * *
8291704 TATATTAATAAATAGATAAATAATAAAAATAAAA
1 -ATA-AAAGAAATAGATAAATAATAATAA-AAAA
8291738 ATAAAAG
1 ATAAAAG
8291745 CCAATTGGGC
Statistics
Matches: 70, Mismatches: 16, Indels: 23
0.64 0.15 0.21
Matches are distributed among these distances:
26 10 0.14
27 1 0.01
28 18 0.26
29 2 0.03
30 4 0.06
31 8 0.11
32 6 0.09
33 6 0.09
34 12 0.17
35 3 0.04
ACGTcount: A:0.71, C:0.01, G:0.05, T:0.22
Consensus pattern (31 bp):
ATAAAAGAAATAGATAAATAATAATAAAAAA
Found at i:8291688 original size:43 final size:44
Alignment explanation
Indices: 8291577--8291694 Score: 113
Period size: 43 Copynumber: 2.8 Consensus size: 44
8291567 AATAAAAAAG
* ** *
8291577 ATAAATATATTAATAGATAACAAAAAAAT--AATTAGATACATA
1 ATAAAAATATTAATAGATAACAAAAAAATAAAAGCAGATAAATA
* *
8291619 A-AAGAAATAGATAAATA-ATAATAAAAAAATAAAAGCAGATAAATA
1 ATAA-AAAT--ATTAATAGATAACAAAAAAATAAAAGCAGATAAATA
8291664 ATAAAAATATTAATAGAT-A-AAAAAAATAAAA
1 ATAAAAATATTAATAGATAACAAAAAAATAAAA
8291695 ATAAAAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
41 2 0.03
42 16 0.26
43 19 0.31
44 8 0.13
45 15 0.24
46 2 0.03
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.23
Consensus pattern (44 bp):
ATAAAAATATTAATAGATAACAAAAAAATAAAAGCAGATAAATA
Found at i:8291689 original size:87 final size:91
Alignment explanation
Indices: 8291577--8291745 Score: 229
Period size: 87 Copynumber: 1.9 Consensus size: 91
8291567 AATAAAAAAG
* * * * *
8291577 ATAAATATATTAATAGATAACAAAAA-AATAAT-TAGATACATA-AAAGAAATAGATAAATAATA
1 ATAAAAATATTAATAGATAAAAAAAATAAAAATAAAAATACATATAAAGAAATAGATAAATAATA
*
8291639 ATAA-AAAAATAAAAGCAGATAAATA
66 AAAATAAAAATAAAAGCAGATAAATA
* * *
8291664 ATAAAAATATTAATAGATAAAAAAAATAAAAATAAAAATATATATTAATAAATAGATAAATAATA
1 ATAAAAATATTAATAGATAAAAAAAATAAAAATAAAAATACATATAAAGAAATAGATAAATAATA
8291729 AAAATAAAAATAAAAGC
66 AAAATAAAAATAAAAGC
8291746 CAATTGGGCC
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 24 0.35
88 5 0.07
89 7 0.10
90 21 0.30
91 12 0.17
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (91 bp):
ATAAAAATATTAATAGATAAAAAAAATAAAAATAAAAATACATATAAAGAAATAGATAAATAATA
AAAATAAAAATAAAAGCAGATAAATA
Found at i:8291703 original size:25 final size:25
Alignment explanation
Indices: 8291623--8291703 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
8291613 TACATAAAAG
8291623 AAATAGATAAATAATAATAAAAA-AA
1 AAATAGATAAA-AATAATAAAAATAA
* * *
8291648 TAAA-AGCAGATAAATAATAAAAATAT
1 -AAATAG-ATAAAAATAATAAAAATAA
* *
8291674 TAATAGATAAAAAAAATAAAAATAA
1 AAATAGATAAAAATAATAAAAATAA
8291699 AAATA
1 AAATA
8291704 TATATTAATA
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
25 34 0.79
26 9 0.21
ACGTcount: A:0.73, C:0.01, G:0.05, T:0.21
Consensus pattern (25 bp):
AAATAGATAAAAATAATAAAAATAA
Found at i:8291734 original size:37 final size:35
Alignment explanation
Indices: 8291670--8291740 Score: 106
Period size: 37 Copynumber: 2.0 Consensus size: 35
8291660 AATAATAAAA
*
8291670 ATATTAATAGATAAAAAAAATAAAAATAAAAATAT
1 ATATTAATAAATAAAAAAAATAAAAATAAAAATAT
*
8291705 ATATTAATAAATAGATAAATAATAAAAATAAAAATA
1 ATATTAATAAATA-A-AAAAAATAAAAATAAAAATA
8291741 AAAGCCAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 12 0.38
36 1 0.03
37 19 0.59
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (35 bp):
ATATTAATAAATAAAAAAAATAAAAATAAAAATAT
Found at i:8291737 original size:43 final size:44
Alignment explanation
Indices: 8291623--8291743 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 44
8291613 TACATAAAAG
*
8291623 AAATAGATAAATAATAATAA-AAAAATAAAAGCAGATAAATAATAA
1 AAATAGATAAATAATAAAAATAAAAATAAAA-CAGATAAATAAT-A
* * * * *
8291668 AAATATTAATAGATAAAAAAAATAAAAATAAAA-ATATATATTAAT-
1 AAATA--GATAAATAATAAAAATAAAAATAAAACAGATA-AATAATA
8291713 AAATAGATAAATAATAAAAATAAAAATAAAA
1 AAATAGATAAATAATAAAAATAAAAATAAAA
8291744 GCCAATTGGG
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
43 23 0.37
45 10 0.16
46 4 0.06
47 16 0.25
48 10 0.16
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.23
Consensus pattern (44 bp):
AAATAGATAAATAATAAAAATAAAAATAAAACAGATAAATAATA
Found at i:8291743 original size:5 final size:6
Alignment explanation
Indices: 8291657--8291743 Score: 59
Period size: 6 Copynumber: 13.0 Consensus size: 6
8291647 ATAAAAGCAG
**
8291657 ATAAATA ATAAAA ATATTA ATAGATAA A-AAAA ATAAAA ATAAAA ATATATATTA
1 ATAAA-A ATAAAA ATAAAA ATA-A-AA ATAAAA ATAAAA ATAAAA ATA-A-A--A
8291711 ATAAATA GATAAATA ATAAAA ATAAAA ATAAAA
1 ATAAA-A -ATAAA-A ATAAAA ATAAAA ATAAAA
8291744 GCCAATTGGG
Statistics
Matches: 68, Mismatches: 4, Indels: 17
0.76 0.04 0.19
Matches are distributed among these distances:
5 3 0.04
6 35 0.51
7 14 0.21
8 11 0.16
9 1 0.01
10 4 0.06
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.25
Consensus pattern (6 bp):
ATAAAA
Found at i:8292083 original size:41 final size:41
Alignment explanation
Indices: 8292010--8292124 Score: 160
Period size: 41 Copynumber: 2.8 Consensus size: 41
8292000 CAAAGCTCCT
* * * *
8292010 CTAAACAGAGGCTCTACGACCTT-AAAAATAAATGGCTCTC
1 CTAATCAGAGGCTCAACAACTTTGAAAAATAAATGGCTCTC
* *
8292050 CTAATCAGAGGCTCAACAATTTTGAAAAATAAATGGCTCTT
1 CTAATCAGAGGCTCAACAACTTTGAAAAATAAATGGCTCTC
*
8292091 CTAATCAGAGGCTCAACGACTTTGAAAAATAAAT
1 CTAATCAGAGGCTCAACAACTTTGAAAAATAAAT
8292125 AAATTCTTTA
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 18 0.27
41 48 0.73
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (41 bp):
CTAATCAGAGGCTCAACAACTTTGAAAAATAAATGGCTCTC
Found at i:8292223 original size:40 final size:41
Alignment explanation
Indices: 8292186--8292292 Score: 101
Period size: 41 Copynumber: 2.6 Consensus size: 41
8292176 CGGAGGCAAC
* *
8292186 ACAACTTTG-AAAGTGAATTGCTCATCTAAATAAAGGCACA
1 ACAACTTTGAAAAATAAATTGCTCATCTAAATAAAGGCACA
* * * **
8292226 ACGACTTTGAAAAATAAATTGCTCTTCTAAACAGAAGTAACA
1 ACAACTTTGAAAAATAAATTGCTCATCTAAATA-AAGGCACA
*
8292268 A-AATTTTGAAAAAAATAAATTGCTC
1 ACAACTTTG--AAAAATAAATTGCTC
8292293 TTTAACAATC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
40 8 0.15
41 24 0.44
42 7 0.13
43 15 0.28
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.27
Consensus pattern (41 bp):
ACAACTTTGAAAAATAAATTGCTCATCTAAATAAAGGCACA
Found at i:8292256 original size:41 final size:41
Alignment explanation
Indices: 8291959--8292256 Score: 155
Period size: 41 Copynumber: 7.3 Consensus size: 41
8291949 TTTTACCAAA
* * * * **
8291959 GCTCCTCTAAGTAGAGGCTCTACGACTTTGCAAAAAATAAACAAA
1 GCTCTTCTAAATAGAGGCACAACGACTTTG--AAAAAT-AA-ATT
* * * * * *
8292004 GCTCCTCTAAACAGAGGCTCTACGACCTT-AAAAATAAATG
1 GCTCTTCTAAATAGAGGCACAACGACTTTGAAAAATAAATT
* * * * *
8292044 GCTCTCCT-AATCAGAGGCTCAACAATTTTGAAAAATAAATG
1 GCTCTTCTAAAT-AGAGGCACAACGACTTTGAAAAATAAATT
* *
8292085 GCTCTTCT-AATCAGAGGCTCAACGACTTTGAAAAATAAATAA
1 GCTCTTCTAAAT-AGAGGCACAACGACTTTGAAAAATAAAT-T
** ** * * *
8292127 ATTCTT-TAAGCAGAAGCACCATGACTTT-AAAAATAAA-T
1 GCTCTTCTAAATAGAGGCACAACGACTTTGAAAAATAAATT
** * * *
8292165 GCT-TCTCTAAACGGAGGCA-ACACAACTTTG-AAAGTGAATT
1 GCTCT-TCTAAATAGAGGCACA-ACGACTTTGAAAAATAAATT
* *
8292205 GCTCATCTAAATAAAGGCACAACGACTTTGAAAAATAAATT
1 GCTCTTCTAAATAGAGGCACAACGACTTTGAAAAATAAATT
8292246 GCTCTTCTAAA
1 GCTCTTCTAAA
8292257 CAGAAGTAAC
Statistics
Matches: 198, Mismatches: 43, Indels: 28
0.74 0.16 0.10
Matches are distributed among these distances:
37 1 0.01
38 2 0.01
39 23 0.12
40 52 0.26
41 83 0.42
42 11 0.06
45 26 0.13
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (41 bp):
GCTCTTCTAAATAGAGGCACAACGACTTTGAAAAATAAATT
Found at i:8292627 original size:44 final size:44
Alignment explanation
Indices: 8292569--8292673 Score: 117
Period size: 43 Copynumber: 2.4 Consensus size: 44
8292559 TTCAAGGCTT
* * *
8292569 TTCAAAGGTTTTCATTTGGCAAACTTGGA-ATTCATATCCAAAAA
1 TTCAAAGCTTTTCATTTGG-AAACTTAGAGATTCACATCCAAAAA
**
8292613 -TCTAAAGCTTTTCATTT-GAATTTTAGAGATTCACATCCAAAAA
1 TTC-AAAGCTTTTCATTTGGAAACTTAGAGATTCACATCCAAAAA
*
8292656 TTCAAAGCTTCTCATTTG
1 TTCAAAGCTTTTCATTTG
8292674 AGTTCAAAGG
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
42 6 0.12
43 30 0.59
44 15 0.29
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.37
Consensus pattern (44 bp):
TTCAAAGCTTTTCATTTGGAAACTTAGAGATTCACATCCAAAAA
Found at i:8296832 original size:493 final size:490
Alignment explanation
Indices: 8295942--8296868 Score: 1468
Period size: 493 Copynumber: 1.9 Consensus size: 490
8295932 TTTACACTAA
*
8295942 ATTTTTTAATTTTTAGTTTTTAATCTTAAGAGTAATAGATCATAAAATGCTAAATTTATTAAGTA
1 ATTTTTTAATTTTTAGTTTTTAATCTTAAAAGTAATAGATCATAAAATGCTAAATTTATTAAGTA
*
8296007 ACTTAATCTTTTTGATACACTAATTGATATAAATTTTTTTATCACAAATTACTTTAAATAATTAT
66 ACTTAATCTTTTTAATACACTAATTGATATAAATTTTTTTATCACAAATTACTTTAAATAATTAT
* * * *
8296072 ATAATAAATACAATCTTCAATAATTACACAAAATAATAATAATTAATCTAATATCAAAAGAATTG
131 ATAATAAATACAATCTTCAATAACTACACAAAATAATAAGAATTAATCTAATATAAAAAAAATTG
* *
8296137 ACAACAATATAAATACCAAAATAATAAAAAAATTATTAAATTTCAGATACAAAATTATAAATTAA
196 ACAACAATATAAATACCAAAATAATAAAAAAATTATTAAATTTCAAATACAAAATCATAAATTAA
* *
8296202 TATAACACAATCAAAATATAATATTTAATTTTAATTAATTTTCATCTAACTTATACAAAAAAATT
261 TATAACAAAATCAAAATATAATATTTAATTTTAATTAATTTTCATCCAACTTATACAAAAAAATT
* * * *
8296267 TTATCAAAATTTTTCATCTAAAATCTCTATATATATCATATTAAATTATTGATCCCTTAATTTTT
326 TTATAAAAATTTTTCATCTAAAA-CGCTATATATATCATATTAAATTATTAATCCCTTAA-TATT
* *
8296332 TTTAATTATAAA-TCTTCAATCCCTCTAATTAGATTTTATCTAAATAAATTTCAAAAATTAAAAA
389 TTTAATTATAAATTCTT-AATACCTCTAATTAAATTTTATCTAAATAAATTTCAAAAATTAAAAA
8296396 TTTTTAAACTTATATTTTGATAAAATTTTCAAACTTAT
453 TTTTTAAACTTATATTTTGATAAAATTTTCAAACTTAT
* *
8296434 ATTTTTTATTTTTTAGTTTTTTAATTTTAAAAGTAATAGATCATAAAATGCTAAATTTATTAAGT
1 ATTTTTTAATTTTTAG-TTTTTAATCTTAAAAGTAATAGATCATAAAATGCTAAATTTATTAAGT
* * *
8296499 AATTTAATCTTTTTAATACACTAATTGGTATAAAATTTTTTTATCACAAATTACTTTCAATAATT
65 AACTTAATCTTTTTAATACACTAATTGATAT-AAATTTTTTTATCACAAATTACTTTAAATAATT
* *
8296564 ATATAATAAATAGAATCTTCAATAACTATACAAACATAATAAGAATTAATCTAATATAAAAAAAA
129 ATATAATAAATACAATCTTCAATAACTACACAAA-ATAATAAGAATTAATCTAATATAAAAAAAA
* * *
8296629 TTGACAACAATATAAATGCCAAAA-CATCAAAAAAATTATTTAAATTTTAAATACAAAATCATAA
193 TTGACAACAATATAAATACCAAAATAAT-AAAAAAATTA-TTAAATTTCAAATACAAAATCATAA
* *
8296693 ATTAATATATAACAAAATCAAAATATAATATTTGATTTTAATTATTTTTCATCCAACTTATACAA
256 ATT-A-ATATAACAAAATCAAAATATAATATTTAATTTTAATTAATTTTCATCCAACTTATACAA
*
8296758 AAAAA-TTTATAAAAATTTTTCATCTAAAA-GCTATATATATTATATTAAATTATTAATCCCTTA
319 AAAAATTTTATAAAAATTTTTCATCTAAAACGCTATATATATCATATTAAATTATTAATCCCTTA
8296821 A-ATTTTTAATTATAAATTCTTAATACCTCTAATTAAATTTTATCTAAA
384 ATATTTTTAATTATAAATTCTTAATACCTCTAATTAAATTTTATCTAAA
8296869 ATTTTTTTAA
Statistics
Matches: 398, Mismatches: 29, Indels: 15
0.90 0.07 0.03
Matches are distributed among these distances:
492 15 0.04
493 113 0.28
494 69 0.17
495 92 0.23
496 25 0.06
497 24 0.06
498 60 0.15
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.41
Consensus pattern (490 bp):
ATTTTTTAATTTTTAGTTTTTAATCTTAAAAGTAATAGATCATAAAATGCTAAATTTATTAAGTA
ACTTAATCTTTTTAATACACTAATTGATATAAATTTTTTTATCACAAATTACTTTAAATAATTAT
ATAATAAATACAATCTTCAATAACTACACAAAATAATAAGAATTAATCTAATATAAAAAAAATTG
ACAACAATATAAATACCAAAATAATAAAAAAATTATTAAATTTCAAATACAAAATCATAAATTAA
TATAACAAAATCAAAATATAATATTTAATTTTAATTAATTTTCATCCAACTTATACAAAAAAATT
TTATAAAAATTTTTCATCTAAAACGCTATATATATCATATTAAATTATTAATCCCTTAATATTTT
TAATTATAAATTCTTAATACCTCTAATTAAATTTTATCTAAATAAATTTCAAAAATTAAAAATTT
TTAAACTTATATTTTGATAAAATTTTCAAACTTAT
Found at i:8300769 original size:11 final size:10
Alignment explanation
Indices: 8300750--8300792 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
8300740 AAATGCGAAA
8300750 TAATATAAAAT
1 TAATAT-AAAT
*
8300761 TAATTTAAAT
1 TAATATAAAT
*
8300771 TAATAAAAAT
1 TAATATAAAT
8300781 TATATATAAAT
1 TA-ATATAAAT
8300792 T
1 T
8300793 TAACGAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 14 0.52
11 13 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
TAATATAAAT
Found at i:8300790 original size:21 final size:21
Alignment explanation
Indices: 8300750--8300792 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
8300740 AAATGCGAAA
*
8300750 TAATATAAAATTAATTTAAAT
1 TAATATAAAATTAATATAAAT
8300771 TAATA-AAAATTATATATAAAT
1 TAATATAAAATTA-ATATAAAT
8300792 T
1 T
8300793 TAACGAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TAATATAAAATTAATATAAAT
Found at i:8301850 original size:30 final size:30
Alignment explanation
Indices: 8301814--8301874 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
8301804 TGACAAGACT
*
8301814 TAAATGCTTAGTGTTTCGTAAATGAGTAGA
1 TAAATGCTTAATGTTTCGTAAATGAGTAGA
*
8301844 TAAATGCTTAATGTTTCGTATATGAGTAGA
1 TAAATGCTTAATGTTTCGTAAATGAGTAGA
8301874 T
1 T
8301875 TTTGATTGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.39
Consensus pattern (30 bp):
TAAATGCTTAATGTTTCGTAAATGAGTAGA
Found at i:8304317 original size:83 final size:84
Alignment explanation
Indices: 8304164--8304317 Score: 202
Period size: 84 Copynumber: 1.8 Consensus size: 84
8304154 TTACTTTGTC
* * * * *** * *
8304164 ATGTTTAAGTATGGGCATTGTTACAGCATTTCAGTTAGGATGGTTTTTATTTTAGTTACAGCAGA
1 ATGTATAAATATGGGCATTATTACAGCATTTCAGCTAGGAACATTATTATTGTAGTTACAGCAGA
8304229 ATAGCTAGTGTATTAAGTT
66 ATAGCTAGTGTATTAAGTT
* *
8304248 ATGTATAAATATGGGCATTATTACAGTATTTCAGCTA-GAACATTATTATTGTAGTTATAGCAGA
1 ATGTATAAATATGGGCATTATTACAGCATTTCAGCTAGGAACATTATTATTGTAGTTACAGCAGA
8304312 ATAGCT
66 ATAGCT
8304318 GATGTTTTTA
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
83 27 0.46
84 32 0.54
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (84 bp):
ATGTATAAATATGGGCATTATTACAGCATTTCAGCTAGGAACATTATTATTGTAGTTACAGCAGA
ATAGCTAGTGTATTAAGTT
Found at i:8305580 original size:183 final size:183
Alignment explanation
Indices: 8305214--8305580 Score: 666
Period size: 183 Copynumber: 2.0 Consensus size: 183
8305204 CTGGAATACA
8305214 TGGATACAGAAGCAAAAGCAGTCTGCTTCTGTGATGGCTATTTACTAATTAATGCATGTTAACAA
1 TGGATACAGAAGCAAAAGCAGTCTGCTTCTGTGATGGCTATTTACTAATTAATGCATGTTAACAA
8305279 TTGGAGTCTTTTTTAAAGCAGCAATGTTGCATAAGAATTTAAAAAAAAAAAAAAGAACAGGAGTT
66 TTGGAGTCTTTTTTAAAGCAGCAATGTTGCATAAGAATTTAAAAAAAAAAAAAAGAACAGGAGTT
* *
8305344 TTTCTGTTAGAATTTTTTTTAATTTATTAATTTTCTTTCTTAACTCGGTTTCG
131 TTTCTGTTAGAATTTTTTTTAATTTATTAATTTTCTTTCTAAACTCAGTTTCG
8305397 TGGATACAGAAGCAAAAGCAGTCTGCTTCTGTGATGGCTATTTACTAATTAATGCATGTTAACAA
1 TGGATACAGAAGCAAAAGCAGTCTGCTTCTGTGATGGCTATTTACTAATTAATGCATGTTAACAA
*
8305462 TTGGAGTCTTTTTTAAAGCAGCAATGTTGCATAAGAATTTAAAAAAAAAAAAAAAAGGACAGGAG
66 TTGGAGTCTTTTTTAAAGCAGCAATGTTGCATAAGAATTT--AAAAAAAAAAAAAAGAACAGGAG
*
8305527 TTTTTCTGTTAGAA-TTTTTTTAATTTATT-ATTTTTTTTCTAAACTCAGTTTCG
129 TTTTTCTGTTAGAATTTTTTTTAATTTATTAATTTTCTTTCTAAACTCAGTTTCG
8305580 T
1 T
8305581 CAAAGATGCT
Statistics
Matches: 178, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
183 127 0.71
184 15 0.08
185 36 0.20
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.38
Consensus pattern (183 bp):
TGGATACAGAAGCAAAAGCAGTCTGCTTCTGTGATGGCTATTTACTAATTAATGCATGTTAACAA
TTGGAGTCTTTTTTAAAGCAGCAATGTTGCATAAGAATTTAAAAAAAAAAAAAAGAACAGGAGTT
TTTCTGTTAGAATTTTTTTTAATTTATTAATTTTCTTTCTAAACTCAGTTTCG
Found at i:8311823 original size:22 final size:23
Alignment explanation
Indices: 8311772--8311823 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
8311762 GATATGAGTT
*
8311772 AAAAT-TTTAATAAAAATTATAT
1 AAAATATTTAATAAAAATTATAA
**
8311794 ATGA-ATTTAATAAAAATTA-AA
1 AAAATATTTAATAAAAATTATAA
8311815 AAAATATTT
1 AAAATATTT
8311824 TATATATTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 4
0.72 0.16 0.12
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
AAAATATTTAATAAAAATTATAA
Found at i:8311887 original size:8 final size:8
Alignment explanation
Indices: 8311874--8311957 Score: 55
Period size: 8 Copynumber: 10.4 Consensus size: 8
8311864 TATATAAAAT
8311874 ATATATAA
1 ATATATAA
8311882 ATATATAA
1 ATATATAA
*
8311890 AT-TATTA
1 ATATATAA
* * *
8311897 ATTTTTAT
1 ATATATAA
8311905 ATGATATAA
1 AT-ATATAA
*
8311914 ATACATAA
1 ATATATAA
*
8311922 AT-TATTAT
1 ATATA-TAA
* *
8311930 ATTTATAT
1 ATATATAA
8311938 ATATAATAA
1 ATAT-ATAA
8311947 ATATATAA
1 ATATATAA
8311955 ATA
1 ATA
8311958 CAGTAGATCC
Statistics
Matches: 59, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
7 7 0.12
8 38 0.64
9 14 0.24
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (8 bp):
ATATATAA
Found at i:8311888 original size:32 final size:32
Alignment explanation
Indices: 8311872--8311956 Score: 127
Period size: 32 Copynumber: 2.6 Consensus size: 32
8311862 TTTATATAAA
*
8311872 ATATATATAAATATATAAATTATTA-ATTTTT
1 ATATATATAAATATATAAATTATTATATTTAT
*
8311903 ATATGATATAAATACATAAATTATTATATTTAT
1 ATAT-ATATAAATATATAAATTATTATATTTAT
8311936 ATATATAATAAATATATAAAT
1 ATATAT-ATAAATATATAAAT
8311957 ACAGTAGATC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
31 4 0.08
32 22 0.46
33 22 0.46
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (32 bp):
ATATATATAAATATATAAATTATTATATTTAT
Found at i:8311924 original size:25 final size:25
Alignment explanation
Indices: 8311884--8311948 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
8311874 ATATATAAAT
* * *
8311884 ATATAAATTATTAATTTTTATA-TG
1 ATATAAATAATAAATTATTATATTG
*
8311908 ATATAAATACATAAATTATTATATTT
1 ATATAAATA-ATAAATTATTATATTG
*
8311934 ATATATATAATAAAT
1 ATATAAATAATAAAT
8311949 ATATAAATAC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 8 0.24
25 17 0.50
26 9 0.26
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (25 bp):
ATATAAATAATAAATTATTATATTG
Found at i:8313667 original size:22 final size:19
Alignment explanation
Indices: 8313638--8313696 Score: 73
Period size: 22 Copynumber: 2.9 Consensus size: 19
8313628 AGATAGTCAA
8313638 AAAATTAAAAAAAAAAAAG
1 AAAATTAAAAAAAAAAAAG
8313657 CAAACACTTAAAAAAAAACAAAG
1 -AAA-A-TTAAAAAAAAA-AAAG
*
8313680 AAAATGAAAAAAAAAAA
1 AAAATTAAAAAAAAAAA
8313697 GTAGGGAAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
19 2 0.06
20 13 0.37
21 2 0.06
22 14 0.40
23 4 0.11
ACGTcount: A:0.80, C:0.07, G:0.05, T:0.08
Consensus pattern (19 bp):
AAAATTAAAAAAAAAAAAG
Found at i:8313674 original size:23 final size:20
Alignment explanation
Indices: 8313644--8313696 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 20
8313634 TCAAAAAATT
*
8313644 AAAAAAAAAAAAGCAAACACTTA
1 AAAAAAAAAAAAG-AAA-A-TGA
*
8313667 AAAAAAAACAAAGAAAATGA
1 AAAAAAAAAAAAGAAAATGA
8313687 AAAAAAAAAA
1 AAAAAAAAAA
8313697 GTAGGGAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 11 0.41
21 1 0.04
22 3 0.11
23 12 0.44
ACGTcount: A:0.81, C:0.08, G:0.06, T:0.06
Consensus pattern (20 bp):
AAAAAAAAAAAAGAAAATGA
Found at i:8314303 original size:17 final size:16
Alignment explanation
Indices: 8314269--8314314 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 16
8314259 ATATTTTTAG
8314269 AAATTATAAAATTAAA
1 AAATTATAAAATTAAA
8314285 AAATTATGAAAACTTAAA
1 AAATTAT-AAAA-TTAAA
* *
8314303 AATTTTTAAAAT
1 AAATTATAAAAT
8314315 CTCAAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 8 0.31
17 8 0.31
18 10 0.38
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (16 bp):
AAATTATAAAATTAAA
Found at i:8314674 original size:20 final size:21
Alignment explanation
Indices: 8314649--8314703 Score: 69
Period size: 19 Copynumber: 2.7 Consensus size: 21
8314639 TGATTAAAAA
*
8314649 AAATTTTTTTTAAAA-TTTTT
1 AAATTTTTTTAAAAAGTTTTT
8314669 AAA-TTTTTTAAAAAGTTTTT
1 AAATTTTTTTAAAAAGTTTTT
* *
8314689 AGATTTTTTCAAAAA
1 AAATTTTTTTAAAAA
8314704 AAAAAAAGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 10 0.33
20 10 0.33
21 10 0.33
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (21 bp):
AAATTTTTTTAAAAAGTTTTT
Found at i:8314688 original size:21 final size:21
Alignment explanation
Indices: 8314649--8314703 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
8314639 TGATTAAAAA
**
8314649 AAATTTTTTTTAAAA-TTTTT
1 AAATTTTTTCAAAAAGTTTTT
8314669 AAATTTTTT-AAAAAGTTTTT
1 AAATTTTTTCAAAAAGTTTTT
*
8314689 AGATTTTTTCAAAAA
1 AAATTTTTTCAAAAA
8314704 AAAAAAAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 4 0.13
20 22 0.71
21 5 0.16
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (21 bp):
AAATTTTTTCAAAAAGTTTTT
Found at i:8314884 original size:10 final size:9
Alignment explanation
Indices: 8314841--8314903 Score: 81
Period size: 9 Copynumber: 6.9 Consensus size: 9
8314831 TTCATTTTAA
8314841 AAATTTTTT
1 AAATTTTTT
* *
8314850 AAAATATTT
1 AAATTTTTT
*
8314859 ATATTTTTT
1 AAATTTTTT
8314868 AAATTTTTT
1 AAATTTTTT
8314877 AAATTTTTT
1 AAATTTTTT
*
8314886 GAATTTTTGT
1 AAATTTTT-T
8314896 AAATTTTT
1 AAATTTTT
8314904 CTTTTAATAC
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
9 37 0.82
10 8 0.18
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (9 bp):
AAATTTTTT
Found at i:8314891 original size:27 final size:28
Alignment explanation
Indices: 8314815--8314903 Score: 87
Period size: 27 Copynumber: 3.2 Consensus size: 28
8314805 AAGTTTTTAT
* **
8314815 AATTTTTTAAAAAATTT-TCA-TTTTAAA
1 AATTTTTTAAAATATTTAT-ATTTTTGTA
8314842 AATTTTTTAAAATATTTATATTTTT-TA
1 AATTTTTTAAAATATTTATATTTTTGTA
* *
8314869 AATTTTTTAAATTTTTTGA-ATTTTTGTA
1 AATTTTTTAAAATATTT-ATATTTTTGTA
8314897 AATTTTT
1 AATTTTT
8314904 CTTTTAATAC
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
27 39 0.72
28 15 0.28
ACGTcount: A:0.36, C:0.01, G:0.02, T:0.61
Consensus pattern (28 bp):
AATTTTTTAAAATATTTATATTTTTGTA
Found at i:8315547 original size:2 final size:2
Alignment explanation
Indices: 8315540--8315570 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8315530 TCATACATAC
8315540 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8315571 AAGTTGGAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8316982 original size:50 final size:52
Alignment explanation
Indices: 8316914--8317018 Score: 169
Period size: 50 Copynumber: 2.1 Consensus size: 52
8316904 TAAAAGTATA
*
8316914 AATTTTAAAAATATTAAAAATGATTGATTAAAATATTTTAAAT-AAAATTTT
1 AATTTTAAAAATATTAAAAATGAATGATTAAAATATTTTAAATAAAAATTTT
* *
8316965 AATTTT-AAAATATTAAAAGTGAATGATTAAAATATTTTTAATAAAAATTTT
1 AATTTTAAAAATATTAAAAATGAATGATTAAAATATTTTAAATAAAAATTTT
8317016 AAT
1 AAT
8317019 AAATTTTTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
50 33 0.66
51 17 0.34
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (52 bp):
AATTTTAAAAATATTAAAAATGAATGATTAAAATATTTTAAATAAAAATTTT
Found at i:8317127 original size:19 final size:17
Alignment explanation
Indices: 8317096--8317134 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
8317086 AATTAAATGG
*
8317096 TTTTTTATTATTAACCTT
1 TTTTTTATCATTAA-CTT
8317114 TTTTATTATCATTAACTT
1 TTTT-TTATCATTAACTT
8317132 TTT
1 TTT
8317135 CATCTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTTTATCATTAACTT
Found at i:8317431 original size:11 final size:11
Alignment explanation
Indices: 8317415--8317445 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8317405 AATTTGGCAC
8317415 TTTTTAATTTT
1 TTTTTAATTTT
8317426 TTTTTAATTTT
1 TTTTTAATTTT
*
8317437 TTTATAATT
1 TTTTTAATT
8317446 CATTATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTAATTTT
Found at i:8317808 original size:3 final size:3
Alignment explanation
Indices: 8317800--8317824 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8317790 TTTTATTTAG
8317800 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
8317825 TTAATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8318626 original size:15 final size:15
Alignment explanation
Indices: 8318606--8318667 Score: 61
Period size: 16 Copynumber: 4.0 Consensus size: 15
8318596 ATTACTAAAA
8318606 TTTTAAAATTATATT
1 TTTTAAAATTATATT
*
8318621 TTTTAAAATTATCAAT
1 TTTTAAAATTAT-ATT
* * * *
8318637 ATTAAAAATAATTATA
1 TTTTAAAATTA-TATT
8318653 TTTTAAAATTATATT
1 TTTTAAAATTATATT
8318668 ACAAAGCTAT
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
15 15 0.43
16 19 0.54
17 1 0.03
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TTTTAAAATTATATT
Found at i:8318763 original size:20 final size:20
Alignment explanation
Indices: 8318709--8318763 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 20
8318699 TAACAAAACT
8318709 ATTTATTATTATTTTAAAATA
1 ATTTATTATTA-TTTAAAATA
*
8318730 ATAT-TTATTA-TTAAAATA
1 ATTTATTATTATTTAAAATA
* *
8318748 TTTTATTAATATTTAA
1 ATTTATTATTATTTAA
8318764 TTATATTCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
18 10 0.36
19 5 0.18
20 10 0.36
21 3 0.11
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTTATTATTATTTAAAATA
Found at i:8318874 original size:17 final size:18
Alignment explanation
Indices: 8318847--8318880 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8318837 TAGAATTAAA
*
8318847 TATTGAAAATATTTATAC
1 TATTGAAAATAATTATAC
8318865 TATT-AAAATAATTATA
1 TATTGAAAATAATTATA
8318881 TTTTATATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
TATTGAAAATAATTATAC
Found at i:8323137 original size:24 final size:24
Alignment explanation
Indices: 8323110--8323166 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
8323100 TAAAATTATT
*
8323110 TTTAATTATTTATTTAATTTTAAA
1 TTTAATTATTTATATAATTTTAAA
*
8323134 TTT-ATATATTTATATAATTTTATA
1 TTTAAT-TATTTATATAATTTTAAA
8323158 TTTACATTA
1 TTTA-ATTA
8323167 AAAAATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 2 0.07
24 22 0.79
25 2 0.07
26 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTAATTATTTATATAATTTTAAA
Found at i:8324522 original size:26 final size:28
Alignment explanation
Indices: 8324491--8324545 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
8324481 CCTAAATTTT
8324491 AAAA-TTTT-TGTCACATTGGTACTTAA
1 AAAATTTTTCTGTCACATTGGTACTTAA
*
8324517 AAAATTTTTCTGTCATATTGGTACTTAA
1 AAAATTTTTCTGTCACATTGGTACTTAA
8324545 A
1 A
8324546 CTTTAAACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 4 0.15
27 4 0.15
28 18 0.69
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.44
Consensus pattern (28 bp):
AAAATTTTTCTGTCACATTGGTACTTAA
Found at i:8324869 original size:14 final size:14
Alignment explanation
Indices: 8324850--8324878 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8324840 ACGTTAGCAT
8324850 AAAAAAATT-CAAA
1 AAAAAAATTACAAA
8324863 AAAAAAATTACAAA
1 AAAAAAATTACAAA
8324877 AA
1 AA
8324879 TTCTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAAAAATTACAAA
Found at i:8324877 original size:10 final size:10
Alignment explanation
Indices: 8324874--8324974 Score: 55
Period size: 10 Copynumber: 10.2 Consensus size: 10
8324864 AAAAAATTAC
8324874 AAAAATTCTA
1 AAAAATTCTA
8324884 AAAAATTCTA
1 AAAAATTCTA
**
8324894 AAAGTCTTCTA
1 AAA-AATTCTA
*
8324905 AAAACCTT-TA
1 AAAA-ATTCTA
**
8324915 AAACTTTCTA
1 AAAAATTCTA
*
8324925 AAAAATT-TT
1 AAAAATTCTA
*
8324934 AAAAATTATA
1 AAAAATTCTA
** * *
8324944 AAATTTTTTT
1 AAAAATTCTA
8324954 AAAAATT-TA
1 AAAAATTCTA
*
8324963 AGAAATTCTA
1 AAAAATTCTA
8324973 AA
1 AA
8324975 TTAATTTAAA
Statistics
Matches: 68, Mismatches: 18, Indels: 10
0.71 0.19 0.10
Matches are distributed among these distances:
9 17 0.25
10 40 0.59
11 11 0.16
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.37
Consensus pattern (10 bp):
AAAAATTCTA
Found at i:8324896 original size:19 final size:19
Alignment explanation
Indices: 8324864--8324974 Score: 66
Period size: 19 Copynumber: 5.7 Consensus size: 19
8324854 AAATTCAAAA
8324864 AAAAAATTAC-AAAAATTCT
1 AAAAAATT-CTAAAAATTCT
*
8324883 AAAAAATTCTAAAAGTCTTCT
1 AAAAAATTCTAAAA--ATTCT
* *
8324904 AAAAACCTT-TAAAACTTTCT
1 AAAAA-ATTCTAAAA-ATTCT
* *
8324924 AAAAAATTTTAAAAATTAT
1 AAAAAATTCTAAAAATTCT
** *
8324943 AAAATTTTTTTAAAAATT-T
1 AAAA-AATTCTAAAAATTCT
*
8324962 AAGAAATTCTAAA
1 AAAAAATTCTAAA
8324975 TTAATTTAAA
Statistics
Matches: 73, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
18 7 0.10
19 25 0.34
20 25 0.34
21 14 0.19
22 2 0.03
ACGTcount: A:0.54, C:0.09, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAAAATTCTAAAAATTCT
Found at i:8324938 original size:21 final size:21
Alignment explanation
Indices: 8324879--8324937 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 21
8324869 ATTACAAAAA
* *
8324879 TTCTAAAAAATTCTAAAAGTC
1 TTCTAAAAAATTTTAAAACTC
**
8324900 TTCTAAAAACCTTTAAAACT-
1 TTCTAAAAAATTTTAAAACTC
8324920 TTCTAAAAAATTTTAAAA
1 TTCTAAAAAATTTTAAAA
8324938 ATTATAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.36
Consensus pattern (21 bp):
TTCTAAAAAATTTTAAAACTC
Found at i:8324945 original size:29 final size:29
Alignment explanation
Indices: 8324913--8324974 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
8324903 TAAAAACCTT
8324913 TAAAACTTTCTAAAAAATTTTAA-AAATTA
1 TAAAACTTTCTAAAAAA-TTTAAGAAATTA
* * * *
8324942 TAAAATTTTTTTAAAAATTTAAGAAATTC
1 TAAAACTTTCTAAAAAATTTAAGAAATTA
8324971 TAAA
1 TAAA
8324975 TTAATTTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 5 0.18
29 23 0.82
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (29 bp):
TAAAACTTTCTAAAAAATTTAAGAAATTA
Found at i:8325023 original size:13 final size:13
Alignment explanation
Indices: 8325005--8325048 Score: 51
Period size: 12 Copynumber: 3.7 Consensus size: 13
8324995 AAAATTAAAA
8325005 CAAATAAAAAATT
1 CAAATAAAAAATT
8325018 CAAAT-AAAAATT
1 CAAATAAAAAATT
*
8325030 CTAA-AAAAAA-T
1 CAAATAAAAAATT
8325041 C-AATAAAA
1 CAAATAAAA
8325049 TTTTTAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 6 0.21
12 15 0.54
13 5 0.18
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.20
Consensus pattern (13 bp):
CAAATAAAAAATT
Found at i:8325045 original size:22 final size:23
Alignment explanation
Indices: 8325010--8325058 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
8325000 TAAAACAAAT
*
8325010 AAAAAATTCAAATAAAAATTCTA
1 AAAAAAATCAAATAAAAATTCTA
* *
8325033 AAAAAAATC-AATAAAATTTTTA
1 AAAAAAATCAAATAAAAATTCTA
8325055 AAAA
1 AAAA
8325059 TACTAACAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (23 bp):
AAAAAAATCAAATAAAAATTCTA
Found at i:8325059 original size:19 final size:20
Alignment explanation
Indices: 8325035--8325079 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
8325025 AAATTCTAAA
8325035 AAAAATCAATAA-AATTTTT-
1 AAAAAT-AATAACAATTTTTC
*
8325054 AAAAATACTAACAATTTTTC
1 AAAAATAATAACAATTTTTC
8325074 AAAAAT
1 AAAAAT
8325080 TTTAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 13 0.57
20 6 0.26
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAATAATAACAATTTTTC
Found at i:8325158 original size:8 final size:8
Alignment explanation
Indices: 8325147--8325202 Score: 58
Period size: 8 Copynumber: 6.5 Consensus size: 8
8325137 AAAATTAAAA
8325147 AAAATTTT
1 AAAATTTT
8325155 AAAATTTT
1 AAAATTTT
8325163 AAAATTTT
1 AAAATTTT
* *
8325171 AAAAAATTA
1 -AAAATTTT
8325180 AAAACTTTT
1 AAAA-TTTT
8325189 AAAAGCTTTT
1 AAAA--TTTT
8325199 AAAA
1 AAAA
8325203 AATTTTGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
8 20 0.49
9 12 0.29
10 9 0.22
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (8 bp):
AAAATTTT
Found at i:8325158 original size:9 final size:9
Alignment explanation
Indices: 8325146--8325256 Score: 93
Period size: 10 Copynumber: 11.8 Consensus size: 9
8325136 CAAAATTAAA
8325146 AAAAATTTT
1 AAAAATTTT
8325155 -AAAATTTT
1 AAAAATTTT
8325163 -AAAATTTT
1 AAAAATTTT
*
8325171 AAAAA-ATT
1 AAAAATTTT
8325179 AAAAACTTTT
1 AAAAA-TTTT
*
8325189 AAAAGCTTTT
1 AAAA-ATTTT
8325199 AAAAAATTTT
1 -AAAAATTTT
8325209 GAAAAATTTT
1 -AAAAATTTT
*
8325219 ATAAAGATTCT
1 A-AAA-ATTTT
*
8325230 AAAAATTCT
1 AAAAATTTT
8325239 AGAAAATTTTT
1 A-AAAA-TTTT
8325250 AAAAATT
1 AAAAATT
8325257 CAAAAATAAT
Statistics
Matches: 86, Mismatches: 7, Indels: 18
0.77 0.06 0.16
Matches are distributed among these distances:
8 23 0.27
9 13 0.15
10 37 0.43
11 13 0.15
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.40
Consensus pattern (9 bp):
AAAAATTTT
Found at i:8325337 original size:18 final size:18
Alignment explanation
Indices: 8325316--8325369 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
8325306 TTTTATAAAG
* *
8325316 TTATAGAATTTTATTTTT
1 TTATAAAATTTAATTTTT
8325334 TTATAAAATTTAA--TTT
1 TTATAAAATTTAATTTTT
8325350 TTAT-AAATTTAATATTTT
1 TTATAAAATTTAAT-TTTT
8325368 TT
1 TT
8325370 GTTTTTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
15 8 0.26
16 7 0.23
18 16 0.52
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
TTATAAAATTTAATTTTT
Found at i:8325350 original size:17 final size:16
Alignment explanation
Indices: 8325325--8325368 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
8325315 GTTATAGAAT
*
8325325 TTTATTTTTTTATAAAA
1 TTTAATTTTTTAT-AAA
8325342 TTTAA-TTTTTATAAA
1 TTTAATTTTTTATAAA
8325357 TTTAATATTTTT
1 TTTAAT-TTTTT
8325369 TGTTTTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 8 0.33
16 7 0.29
17 9 0.38
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTAATTTTTTATAAA
Found at i:8325357 original size:15 final size:16
Alignment explanation
Indices: 8325331--8325367 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
8325321 GAATTTTATT
8325331 TTTTTATAAAATTTAA
1 TTTTTATAAAATTTAA
8325347 TTTTTAT-AAATTTAA
1 TTTTTATAAAATTTAA
8325362 TATTTT
1 T-TTTT
8325368 TTGTTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTTATAAAATTTAA
Found at i:8325394 original size:19 final size:19
Alignment explanation
Indices: 8325372--8325440 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
8325362 TATTTTTTGT
*
8325372 TTTTAAAAATATTTTAGAA
1 TTTTAAAAATATTTTACAA
8325391 TTTTAAAAA-ATTTT-CAA
1 TTTTAAAAATATTTTACAA
* * * *
8325408 TTATGATAAT-TTTTATAA
1 TTTTAAAAATATTTTACAA
8325426 TTTATAAAAATATTT
1 TTT-TAAAAATATTT
8325441 CATATTTTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
17 12 0.32
18 9 0.24
19 14 0.37
20 3 0.08
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (19 bp):
TTTTAAAAATATTTTACAA
Found at i:8325442 original size:36 final size:36
Alignment explanation
Indices: 8325383--8325469 Score: 90
Period size: 35 Copynumber: 2.4 Consensus size: 36
8325373 TTTAAAAATA
*
8325383 TTTTAGAATTT-TAAAAAATTTTCA-ATTATGATAAT
1 TTTTATAATTTATAAAAAATTTTCATATT-TGATAAT
**
8325418 TTTTATAATTTAT-AAAAATATTTCATATTTTTTAAT
1 TTTTATAATTTATAAAAAAT-TTTCATATTTGATAAT
*
8325454 TTTAATAAATTTATAA
1 TTTTAT-AATTTATAA
8325470 TTTTTTGAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
35 16 0.37
36 16 0.37
37 10 0.23
38 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (36 bp):
TTTTATAATTTATAAAAAATTTTCATATTTGATAAT
Found at i:8325474 original size:18 final size:18
Alignment explanation
Indices: 8325453--8325493 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
8325443 TATTTTTTAA
*
8325453 TTTTAATAAATTTATAATT
1 TTTTAAGAAATTTA-AATT
*
8325472 TTTTGAGAAATTTAAATT
1 TTTTAAGAAATTTAAATT
8325490 TTTT
1 TTTT
8325494 TTGAATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (18 bp):
TTTTAAGAAATTTAAATT
Found at i:8325512 original size:19 final size:19
Alignment explanation
Indices: 8325460--8325512 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
8325450 TAATTTTAAT
*
8325460 AAATTTATAATTTTTTGAG
1 AAATTTAAAATTTTTTGAG
*
8325479 AAATTTAAATTTTTTTTGA-
1 AAATTTAAA-ATTTTTTGAG
*
8325498 ATATTTAAGAATTTT
1 AAATTTAA-AATTTT
8325513 GTAAAAAACA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 19 0.68
20 9 0.32
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.55
Consensus pattern (19 bp):
AAATTTAAAATTTTTTGAG
Found at i:8325579 original size:19 final size:21
Alignment explanation
Indices: 8325557--8325596 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8325547 ATTTTTTATA
8325557 ATTTTT-TAAA-ATTAAAAAT
1 ATTTTTATAAATATTAAAAAT
*
8325576 ATTTTTATAAATTTTAAAAAT
1 ATTTTTATAAATATTAAAAAT
8325597 CATTACAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 4 0.22
21 8 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTTTTATAAATATTAAAAAT
Found at i:8325639 original size:10 final size:10
Alignment explanation
Indices: 8325614--8325799 Score: 89
Period size: 10 Copynumber: 18.8 Consensus size: 10
8325604 ATATGTTAAG
8325614 AAATATTTTTA
1 AAAT-TTTTTA
* *
8325625 GAATTCTTTA
1 AAATTTTTTA
8325635 AAATTTTTTA
1 AAATTTTTTA
*
8325645 GAATTTTTTA
1 AAATTTTTTA
*
8325655 AAATTATTT-
1 AAATTTTTTA
* *
8325664 CAAGTTTTTA
1 AAATTTTTTA
*
8325674 AATTTTTTTTTGA
1 AA--ATTTTTT-A
8325687 AAA--TTTTA
1 AAATTTTTTA
*
8325695 AAA-CTTTTA
1 AAATTTTTTA
*
8325704 AAA-TTTTAA
1 AAATTTTTTA
8325713 AAATTTTTTA
1 AAATTTTTTA
**
8325723 CAAA-TTTGCA
1 -AAATTTTTTA
**
8325733 AAAAATTTTA
1 AAATTTTTTA
* *
8325743 ATA-TTTTAA
1 AAATTTTTTA
* *
8325752 AAAATGTTTA
1 AAATTTTTTA
* * *
8325762 ATATTTGTTG
1 AAATTTTTTA
*
8325772 AATTTTTTTA
1 AAATTTTTTA
8325782 AAATTTTTTA
1 AAATTTTTTA
8325792 AAATTTTT
1 AAATTTTT
8325800 AGAATTTTAA
Statistics
Matches: 128, Mismatches: 38, Indels: 19
0.69 0.21 0.10
Matches are distributed among these distances:
8 4 0.03
9 34 0.27
10 76 0.59
11 6 0.05
12 5 0.04
13 3 0.02
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (10 bp):
AAATTTTTTA
Found at i:8325697 original size:8 final size:9
Alignment explanation
Indices: 8325681--8325719 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
8325671 TTAAATTTTT
*
8325681 TTTTGAAAA
1 TTTTAAAAA
*
8325690 TTTTAAAAC
1 TTTTAAAAA
8325699 TTTT-AAAA
1 TTTTAAAAA
8325707 TTTTAAAAA
1 TTTTAAAAA
8325716 TTTT
1 TTTT
8325720 TTACAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
8 7 0.27
9 19 0.73
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:8325708 original size:17 final size:18
Alignment explanation
Indices: 8325681--8325719 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
8325671 TTAAATTTTT
*
8325681 TTTTGAAAATTTTAAAAC
1 TTTTGAAAATTTTAAAAA
8325699 TTTT-AAAATTTTAAAAA
1 TTTTGAAAATTTTAAAAA
8325716 TTTT
1 TTTT
8325720 TTACAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
TTTTGAAAATTTTAAAAA
Found at i:8325729 original size:20 final size:19
Alignment explanation
Indices: 8325556--8325812 Score: 114
Period size: 20 Copynumber: 13.1 Consensus size: 19
8325546 CATTTTTTAT
8325556 AATTTTTTAAAA--TTAAA
1 AATTTTTTAAAATTTTAAA
8325573 AATATTTTTATAAATTTTAAA
1 AAT-TTTTTA-AAATTTTAAA
** *
8325594 AA-TCATTACAATATGTTAAGA
1 AATTTTTTA-AA-ATTTTAA-A
* *
8325615 AATATTTTTAGAATTCTTTAA
1 AAT-TTTTTAAAATT-TTAAA
* *
8325636 AATTTTTTAGAATTTTTTAA
1 AATTTTTTA-AAATTTTAAA
* **
8325656 AATTATTTCAAGTTTTTAAA
1 AATT-TTTTAAAATTTTAAA
**
8325676 TTTTTTTTTGAAAATTTT-AA
1 -AATTTTTT-AAAATTTTAAA
*
8325696 AA-CTTTTAAAATTTTAAA
1 AATTTTTTAAAATTTTAAA
*
8325714 AATTTTTTACAAATTTGCAAA
1 AATTTTTTA-AAATTT-TAAA
* *
8325735 AA-ATTTTAATATTTTAAA
1 AATTTTTTAAAATTTTAAA
* * * **
8325753 AAATGTTTAATATTTGTTGA
1 AATTTTTTAAAATTT-TAAA
* *
8325773 ATTTTTTTAAAATTTTTTAA
1 AATTTTTTAAAA-TTTTAAA
*
8325793 AA-TTTTTAGAATTTTAAA
1 AATTTTTTAAAATTTTAAA
8325811 AA
1 AA
8325813 AAATTTTGAA
Statistics
Matches: 181, Mismatches: 39, Indels: 39
0.70 0.15 0.15
Matches are distributed among these distances:
17 11 0.06
18 27 0.15
19 37 0.20
20 59 0.33
21 39 0.22
22 4 0.02
23 4 0.02
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (19 bp):
AATTTTTTAAAATTTTAAA
Found at i:8325813 original size:19 final size:19
Alignment explanation
Indices: 8325559--8325813 Score: 99
Period size: 19 Copynumber: 13.0 Consensus size: 19
8325549 TTTTTATAAT
8325559 TTTTTAAAA--TTAAAAATA
1 TTTTTAAAATTTTAAAAA-A
8325577 TTTTTATAAATTTT-AAAAA
1 TTTTTA-AAATTTTAAAAAA
** *
8325596 TCATTACAATATGTTAAGAAATA
1 TTTTTA-AA-ATTTTAA-AAA-A
* * *
8325619 TTTTTAGAATTCTTTAAAAT
1 TTTTTAAAATT-TTAAAAAA
* **
8325639 TTTTTAGAATTTTTTAAAA
1 TTTTTAAAATTTTAAAAAA
** ***
8325658 TTATTTCAAGTTTTTAAATTTT
1 TT-TTT-AAAATTTTAAA-AAA
8325680 TTTTTGAAAATTTT--AAAA
1 TTTTT-AAAATTTTAAAAAA
* *
8325698 CTTTTAAAATTTTAAAAAT
1 TTTTTAAAATTTTAAAAAA
*
8325717 TTTTTACAAATTTGCAAAAAA
1 TTTTTA-AAATTT-TAAAAAA
*
8325738 -TTTTAATATTTTAAAAAA
1 TTTTTAAAATTTTAAAAAA
* * ** **
8325756 TGTTTAATATTTGTTGAATT
1 TTTTTAAAATTT-TAAAAAA
**
8325776 TTTTTAAAATTTTTTAAAA
1 TTTTTAAAATTTTAAAAAA
*
8325795 TTTTTAGAATTTTAAAAAA
1 TTTTTAAAATTTTAAAAAA
8325814 AATTTTGAAA
Statistics
Matches: 174, Mismatches: 46, Indels: 33
0.69 0.18 0.13
Matches are distributed among these distances:
17 8 0.05
18 16 0.09
19 62 0.36
20 46 0.26
21 28 0.16
22 9 0.05
23 5 0.03
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (19 bp):
TTTTTAAAATTTTAAAAAA
Found at i:8326026 original size:11 final size:11
Alignment explanation
Indices: 8325976--8326026 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
8325966 AAAAAATTAT
8325976 AATTTTTTTAG
1 AATTTTTTTAG
8325987 AATTCTTTTT--
1 AATT-TTTTTAG
8325997 AATTCTTTTTAG
1 AATT-TTTTTAG
* *
8326009 AAATTTTTAAG
1 AATTTTTTTAG
8326020 AATTTTT
1 AATTTTT
8326027 ATATTTTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
10 10 0.29
11 16 0.47
12 8 0.24
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.61
Consensus pattern (11 bp):
AATTTTTTTAG
Found at i:8327095 original size:7 final size:7
Alignment explanation
Indices: 8327069--8327231 Score: 81
Period size: 7 Copynumber: 25.6 Consensus size: 7
8327059 TGGTTTGGTT
8327069 TTTAGGG
1 TTTAGGG
*
8327076 TTTAAGG
1 TTTAGGG
8327083 --TA-GG
1 TTTAGGG
8327087 TTTAGGG
1 TTTAGGG
8327094 TTTAGGG
1 TTTAGGG
*
8327101 TTTAGGA
1 TTTAGGG
*
8327108 TTT--TG
1 TTTAGGG
8327113 TTTA--G
1 TTTAGGG
8327118 TATTA-GG
1 T-TTAGGG
* *
8327125 CTTCGGG
1 TTTAGGG
8327132 TTTA-GG
1 TTTAGGG
*
8327138 TTTAGGA
1 TTTAGGG
8327145 TTTAGGG
1 TTTAGGG
8327152 -TTA--G
1 TTTAGGG
*
8327156 TTTAGGA
1 TTTAGGG
8327163 TTTAGGG
1 TTTAGGG
*
8327170 -TTA-AG
1 TTTAGGG
*
8327175 TTTAGTG
1 TTTAGGG
*
8327182 TTTAAGG
1 TTTAGGG
*
8327189 TTTGGGG
1 TTTAGGG
**
8327196 TTTAAAG
1 TTTAGGG
8327203 TTT-GGG
1 TTTAGGG
8327209 TTTAGGG
1 TTTAGGG
8327216 -TTA-GG
1 TTTAGGG
8327221 TTTAGGG
1 TTTAGGG
8327228 TTTA
1 TTTA
8327232 AAGTTTTAGT
Statistics
Matches: 117, Mismatches: 23, Indels: 32
0.68 0.13 0.19
Matches are distributed among these distances:
4 3 0.03
5 13 0.11
6 32 0.27
7 69 0.59
ACGTcount: A:0.19, C:0.01, G:0.34, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:8327230 original size:19 final size:19
Alignment explanation
Indices: 8327069--8327231 Score: 97
Period size: 18 Copynumber: 8.6 Consensus size: 19
8327059 TGGTTTGGTT
*
8327069 TTTAGGGTTTAAGG-TAGG
1 TTTAGGGTTTAGGGTTAGG
8327087 TTTAGGGTTTAGGGTTTAGG
1 TTTAGGGTTTAGGG-TTAGG
* **
8327107 ATTT--TGTTTAGTATTAGG
1 -TTTAGGGTTTAGGGTTAGG
* * *
8327125 CTTCGGGTTTAGGTTTAGG
1 TTTAGGGTTTAGGGTTAGG
*
8327144 ATTTAGGG-TTA-GTTTAGG
1 -TTTAGGGTTTAGGGTTAGG
* *
8327162 ATTTAGGG-TTAAGTTTAGTG
1 -TTTAGGGTTTAGGGTTAG-G
* * *
8327182 TTTAAGGTTTGGGGTTTAAAG
1 TTTAGGGTTTAGGG-TT-AGG
8327203 TTT-GGGTTTAGGGTTAGG
1 TTTAGGGTTTAGGGTTAGG
8327221 TTTAGGGTTTA
1 TTTAGGGTTTA
8327232 AAGTTTTAGT
Statistics
Matches: 115, Mismatches: 18, Indels: 23
0.74 0.12 0.15
Matches are distributed among these distances:
17 2 0.02
18 41 0.36
19 41 0.36
20 21 0.18
21 9 0.08
22 1 0.01
ACGTcount: A:0.19, C:0.01, G:0.34, T:0.45
Consensus pattern (19 bp):
TTTAGGGTTTAGGGTTAGG
Found at i:8327280 original size:26 final size:26
Alignment explanation
Indices: 8327250--8327331 Score: 112
Period size: 26 Copynumber: 3.2 Consensus size: 26
8327240 GTTCGAGGTT
8327250 TGCATGGTAGTTTGGGGTTTAGGGTA
1 TGCATGGTAGTTTGGGGTTTAGGGTA
*
8327276 TGCATGGTGGTTTGGGGTTTAGGGTA
1 TGCATGGTAGTTTGGGGTTTAGGGTA
* * *
8327302 TGCATGGTTTGTTT-GGGTTTAAGGTT
1 TGCATGG-TAGTTTGGGGTTTAGGGTA
8327328 TGCA
1 TGCA
8327332 AAGGGAATGC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 46 0.90
27 5 0.10
ACGTcount: A:0.13, C:0.05, G:0.40, T:0.41
Consensus pattern (26 bp):
TGCATGGTAGTTTGGGGTTTAGGGTA
Found at i:8328293 original size:21 final size:22
Alignment explanation
Indices: 8328269--8328319 Score: 70
Period size: 21 Copynumber: 2.3 Consensus size: 22
8328259 AAATAAAACT
8328269 AATATGAAAA-GTAT-AGAAATG
1 AATATGAAAATGTATGA-AAATG
8328290 AATATGAAAATGTATGAAAATG
1 AATATGAAAATGTATGAAAATG
8328312 AGATATGA
1 A-ATATGA
8328320 GTTATAACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 10 0.37
22 10 0.37
23 7 0.26
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (22 bp):
AATATGAAAATGTATGAAAATG
Found at i:8329352 original size:20 final size:20
Alignment explanation
Indices: 8329329--8329377 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
8329319 AGTTTGATCT
8329329 AGTTCGA-TTGATTTTGACTA
1 AGTTCGACTTGA-TTTGACTA
* *
8329349 AGTTTGACTTTATTTGACTA
1 AGTTCGACTTGATTTGACTA
*
8329369 AGTTTGACT
1 AGTTCGACT
8329378 AAGTTTGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.24, C:0.10, G:0.18, T:0.47
Consensus pattern (20 bp):
AGTTCGACTTGATTTGACTA
Found at i:8329356 original size:10 final size:10
Alignment explanation
Indices: 8329341--8329386 Score: 67
Period size: 10 Copynumber: 4.6 Consensus size: 10
8329331 TTCGATTGAT
8329341 TTTGACTAAG
1 TTTGACTAAG
*
8329351 TTTGACTTTA-
1 TTTGAC-TAAG
8329361 TTTGACTAAG
1 TTTGACTAAG
8329371 TTTGACTAAG
1 TTTGACTAAG
8329381 TTTGAC
1 TTTGAC
8329387 CTTAGGGCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 2 0.06
10 28 0.88
11 2 0.06
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.46
Consensus pattern (10 bp):
TTTGACTAAG
Done.