Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 50 of 190
Found at i:8331378 original size:22 final size:22
Alignment explanation
Indices: 8331353--8331416 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
8331343 AAATTAGTAG
8331353 TAATCATTAATAACTTAATAAT
1 TAATCATTAATAACTTAATAAT
* *
8331375 TAATCAATAATAACTTAATAGT
1 TAATCATTAATAACTTAATAAT
* * *
8331397 AAATTATGAATAACTTAATA
1 TAATCATTAATAACTTAATA
8331417 GTAAATTAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.52, C:0.08, G:0.03, T:0.38
Consensus pattern (22 bp):
TAATCATTAATAACTTAATAAT
Found at i:8331394 original size:11 final size:11
Alignment explanation
Indices: 8331360--8331530 Score: 78
Period size: 11 Copynumber: 15.4 Consensus size: 11
8331350 TAGTAATCAT
*
8331360 TAATAACTTAA
1 TAATAAATTAA
* *
8331371 TAATTAATCAA
1 TAATAAATTAA
*
8331382 TAATAACTTAA
1 TAATAAATTAA
*
8331393 TAGTAAATT-A
1 TAATAAATTAA
*
8331403 TGAATAACTTAA
1 T-AATAAATTAA
*
8331415 TAGTAAATTAA
1 TAATAAATTAA
* *
8331426 TGATAATTTAA
1 TAATAAATTAA
*
8331437 TAGTAAATTAA
1 TAATAAATTAA
* **
8331448 TGATACTTTAA
1 TAATAAATTAA
* * *
8331459 CAGTAAATAAA
1 TAATAAATTAA
*
8331470 TAATAATTTAA
1 TAATAAATTAA
*
8331481 TAGTTAAA--AA
1 TA-ATAAATTAA
* *
8331491 TTAATAATTTAG
1 -TAATAAATTAA
* *
8331503 TAGTAAATCAA
1 TAATAAATTAA
8331514 TAATAACATATAA
1 TAATAA-AT-TAA
8331527 TAAT
1 TAAT
8331531 TGCATAATTA
Statistics
Matches: 109, Mismatches: 43, Indels: 14
0.66 0.26 0.08
Matches are distributed among these distances:
10 7 0.06
11 88 0.81
12 8 0.07
13 6 0.06
ACGTcount: A:0.53, C:0.05, G:0.06, T:0.37
Consensus pattern (11 bp):
TAATAAATTAA
Found at i:8331412 original size:44 final size:44
Alignment explanation
Indices: 8331334--8331520 Score: 168
Period size: 44 Copynumber: 4.3 Consensus size: 44
8331324 ATTTAAAAGC
* * * * * *
8331334 AATCAAT-ATAAATTAGTAGT-AATCATTAATAACTTAATAATT
1 AATCAATAATAACTTAATAGTAAATTATGAATAACTTAATAGTA
8331376 AATCAATAATAACTTAATAGTAAATTATGAATAACTTAATAGTA
1 AATCAATAATAACTTAATAGTAAATTATGAATAACTTAATAGTA
* * * *
8331420 AATTAATGATAATTTAATAGTAAATTAATG-AT-ACTTTAACAGTA
1 AATCAATAATAACTTAATAGTAAATT-ATGAATAAC-TTAATAGTA
* * * * * *
8331464 AATAAATAATAATTTAATAGTTAAA-AATTAATAATTTAGTAGTA
1 AATCAATAATAACTTAATAG-TAAATTATGAATAACTTAATAGTA
8331508 AATCAATAATAAC
1 AATCAATAATAAC
8331521 ATATAATAAT
Statistics
Matches: 119, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
42 7 0.06
43 15 0.13
44 89 0.75
45 8 0.07
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.36
Consensus pattern (44 bp):
AATCAATAATAACTTAATAGTAAATTATGAATAACTTAATAGTA
Found at i:8331417 original size:22 final size:22
Alignment explanation
Indices: 8331361--8331520 Score: 127
Period size: 22 Copynumber: 7.3 Consensus size: 22
8331351 AGTAATCATT
* *
8331361 AATAACTTAATAATTAATCAAT-
1 AATAACTTAATAGTAAAT-AATG
*
8331383 AATAACTTAATAGTAAATTATG
1 AATAACTTAATAGTAAATAATG
8331405 AATAACTTAATAGTAAATTAATG
1 AATAACTTAATAGTAAA-TAATG
*
8331428 -ATAATTTAATAGTAAATTAATG
1 AATAACTTAATAGTAAA-TAATG
*
8331450 -AT-ACTTTAACAGTAAATAAAT-
1 AATAAC-TTAATAGTAAAT-AATG
* *
8331471 AATAATTTAATAGTTAAA-AATT
1 AATAACTTAATAG-TAAATAATG
* *
8331493 AATAATTTAGTAGTAAATCAAT-
1 AATAACTTAATAGTAAAT-AATG
8331515 AATAAC
1 AATAAC
8331521 ATATAATAAT
Statistics
Matches: 117, Mismatches: 11, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
21 11 0.09
22 94 0.80
23 12 0.10
ACGTcount: A:0.53, C:0.05, G:0.06, T:0.36
Consensus pattern (22 bp):
AATAACTTAATAGTAAATAATG
Found at i:8331594 original size:44 final size:43
Alignment explanation
Indices: 8331500--8331607 Score: 126
Period size: 44 Copynumber: 2.5 Consensus size: 43
8331490 ATTAATAATT
* ** **
8331500 TAGTAGTAAATCAATAATAACATATAATAATTGCATAATTATT
1 TAGTAGTAAATCAATAATAACATATAATAAATGCATAACAACA
* * *
8331543 TAGTAGTAAATCAATTATAATATAATTATAAATGCATAACAACA
1 TAGTAGTAAATCAATAATAACAT-ATAATAAATGCATAACAACA
*
8331587 TAGTAGTAAATCAATGATAAC
1 TAGTAGTAAATCAATAATAAC
8331608 TTATTAAAAT
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 21 0.39
44 33 0.61
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.33
Consensus pattern (43 bp):
TAGTAGTAAATCAATAATAACATATAATAAATGCATAACAACA
Found at i:8331673 original size:22 final size:22
Alignment explanation
Indices: 8331648--8331695 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
8331638 TTAATCTTTA
*
8331648 ATAACTTAGTAATAAATTAATG
1 ATAACTTAATAATAAATTAATG
* * *
8331670 ATAATTTAATTATAAATTAGTG
1 ATAACTTAATAATAAATTAATG
8331692 ATAA
1 ATAA
8331696 TTTGATAGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (22 bp):
ATAACTTAATAATAAATTAATG
Found at i:8331745 original size:39 final size:39
Alignment explanation
Indices: 8331702--8331777 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
8331692 ATAATTTGAT
** * *
8331702 AGTAAATCAAATTTGATTTAATAGTAATTAATTGATAGA
1 AGTAAATCAAAGATAATTTAATAGTAAATAATTGATAGA
*
8331741 AGTAAATCATAGATAATTTAATAGTAAATAATTGATA
1 AGTAAATCAAAGATAATTTAATAGTAAATAATTGATA
8331778 ATTTAGTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.49, C:0.03, G:0.12, T:0.37
Consensus pattern (39 bp):
AGTAAATCAAAGATAATTTAATAGTAAATAATTGATAGA
Found at i:8331767 original size:22 final size:22
Alignment explanation
Indices: 8331741--8331782 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8331731 AATTGATAGA
*
8331741 AGTAAATCATAGATAATTTAAT
1 AGTAAATAATAGATAATTTAAT
*
8331763 AGTAAATAATTGATAATTTA
1 AGTAAATAATAGATAATTTA
8331783 GTAATTAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (22 bp):
AGTAAATAATAGATAATTTAAT
Found at i:8331883 original size:22 final size:22
Alignment explanation
Indices: 8331824--8331876 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
8331814 CAATAGTGAA
* *
8331824 TAGTTAATTAGTG-ATAATTTAT
1 TAGTAAATTA-TGAATAATTTAG
8331846 TAGTAAATTATGAATAATTTAG
1 TAGTAAATTATGAATAATTTAG
8331868 TAGTAAATT
1 TAGTAAATT
8331877 GATAATATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 2 0.07
22 26 0.93
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (22 bp):
TAGTAAATTATGAATAATTTAG
Found at i:8331997 original size:20 final size:19
Alignment explanation
Indices: 8331972--8332025 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
8331962 AATCATTAAC
*
8331972 AATTTAATAGTAAATTATAT
1 AATTTAATAGTAAATT-GAT
*
8331992 AATTTAAAAGTAAATTGAT
1 AATTTAATAGTAAATTGAT
* *
8332011 AACTTAATATTAAAT
1 AATTTAATAGTAAAT
8332026 CACAAATAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.41
Consensus pattern (19 bp):
AATTTAATAGTAAATTGAT
Found at i:8332129 original size:22 final size:22
Alignment explanation
Indices: 8332103--8332287 Score: 117
Period size: 22 Copynumber: 8.4 Consensus size: 22
8332093 TAACTTTATG
* *
8332103 ATAAATTATCAATAAATTAATA
1 ATAAATCATCAATAATTTAATA
* * *
8332125 GTAAATCAGT-TATAGCTTT-ATA
1 ATAAATCA-TCAATA-ATTTAATA
* *
8332147 ATAAATTATCAATAACTTAATA
1 ATAAATCATCAATAATTTAATA
*
8332169 ATAAATCATCAATAATTTAACA
1 ATAAATCATCAATAATTTAATA
**
8332191 ATAAATCATTTATAATTTAATA
1 ATAAATCATCAATAATTTAATA
* * *
8332213 ATAAAACATTC-ATAAGTTAATG
1 ATAAATCA-TCAATAATTTAATA
* * * *
8332235 GTAAATCTTTC-ATAAATTAGTA
1 ATAAATC-ATCAATAATTTAATA
* * *
8332257 GTAAATCATAAATAATTTATTA
1 ATAAATCATCAATAATTTAATA
*
8332279 GTAAATCAT
1 ATAAATCAT
8332288 TGACAATTAA
Statistics
Matches: 126, Mismatches: 30, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
21 4 0.03
22 118 0.94
23 4 0.03
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (22 bp):
ATAAATCATCAATAATTTAATA
Found at i:8332173 original size:66 final size:66
Alignment explanation
Indices: 8332092--8332217 Score: 164
Period size: 66 Copynumber: 1.9 Consensus size: 66
8332082 TTAATCAATG
* * * * * *
8332092 ATAACTTTATGATAAATTATCAATAAATTAATAGTAAATCAGTTATAGCTTT-ATAATAAATTAT
1 ATAACTTAATAATAAATCATCAATAAATTAACAATAAATCAGTTATA-ATTTAATAATAAATTAT
8332156 CA
65 CA
* *
8332158 ATAACTTAATAATAAATCATCAATAATTTAACAATAAATCATTTATAATTTAATAATAAA
1 ATAACTTAATAATAAATCATCAATAAATTAACAATAAATCAGTTATAATTTAATAATAAA
8332218 ACATTCATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
65 3 0.06
66 48 0.94
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (66 bp):
ATAACTTAATAATAAATCATCAATAAATTAACAATAAATCAGTTATAATTTAATAATAAATTATC
A
Found at i:8332295 original size:22 final size:22
Alignment explanation
Indices: 8332249--8332311 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
8332239 ATCTTTCATA
** *
8332249 AATT-AGTAGTAAATCATAAAT
1 AATTAAGTAGTAAATCATTGAC
* *
8332270 AATTTATTAGTAAATCATTGAC
1 AATTAAGTAGTAAATCATTGAC
8332292 AATTAAGT-GTAAATCATTGA
1 AATTAAGTAGTAAATCATTGA
8332312 TAACATAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 16 0.46
22 19 0.54
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (22 bp):
AATTAAGTAGTAAATCATTGAC
Found at i:8332483 original size:12 final size:13
Alignment explanation
Indices: 8332461--8332487 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8332451 TGTGAACCTA
8332461 TTTAATAAAAAAT
1 TTTAATAAAAAAT
8332474 TTTAATAAAAAAT
1 TTTAATAAAAAAT
8332487 T
1 T
8332488 CTAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TTTAATAAAAAAT
Found at i:8332745 original size:22 final size:22
Alignment explanation
Indices: 8332652--8332761 Score: 73
Period size: 22 Copynumber: 5.0 Consensus size: 22
8332642 AATAAATAAT
* * *
8332652 TAATAACTTAATAATAAATTAG
1 TAATAATTTAATAGTAAATCAG
* * *
8332674 T-TTCAATTTCATAGT-AATTAG
1 TAAT-AATTTAATAGTAAATCAG
* *
8332695 TTAATAAACTTAATAGTAATTCA-
1 -TAAT-AATTTAATAGTAAATCAG
*
8332718 TAAATAATTTAGTAGTAAATCAG
1 T-AATAATTTAATAGTAAATCAG
*
8332741 TAATAATTTAATAGTTAATCA
1 TAATAATTTAATAGTAAATCA
8332762 TTGAAAACTT
Statistics
Matches: 67, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
21 7 0.10
22 43 0.64
23 14 0.21
24 3 0.04
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.40
Consensus pattern (22 bp):
TAATAATTTAATAGTAAATCAG
Found at i:8332879 original size:22 final size:22
Alignment explanation
Indices: 8332822--8332876 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
8332812 TCAAATAGTT
8332822 AATCAATGATAATTCAATAATA
1 AATCAATGATAATTCAATAATA
* ** *
8332844 AATTACGGATAATTTAAT-ATA
1 AATCAATGATAATTCAATAATA
8332865 AATCAATGATAA
1 AATCAATGATAA
8332877 ATTGGTAGTG
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 12 0.46
22 14 0.54
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (22 bp):
AATCAATGATAATTCAATAATA
Found at i:8333006 original size:22 final size:22
Alignment explanation
Indices: 8332981--8333028 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
8332971 TAAATGTATA
*
8332981 ATAATATATTAGTAAATCATTG
1 ATAATATAATAGTAAATCATTG
* *
8333003 ATAATTTAATAGTAAATTATTG
1 ATAATATAATAGTAAATCATTG
8333025 ATAA
1 ATAA
8333029 CTTAGTAGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (22 bp):
ATAATATAATAGTAAATCATTG
Found at i:8333037 original size:22 final size:22
Alignment explanation
Indices: 8332990--8333039 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
8332980 AATAATATAT
*
8332990 TAGTAAATCATTGATAATTTAA
1 TAGTAAATCATTGATAACTTAA
* *
8333012 TAGTAAATTATTGATAACTTAG
1 TAGTAAATCATTGATAACTTAA
8333034 TAGTAA
1 TAGTAA
8333040 TAAATCACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.40
Consensus pattern (22 bp):
TAGTAAATCATTGATAACTTAA
Found at i:8333038 original size:44 final size:43
Alignment explanation
Indices: 8332968--8333324 Score: 132
Period size: 44 Copynumber: 7.9 Consensus size: 43
8332958 TGATAACATG
* *
8332968 TAGTAAATGTA-TAATAATATATTAGTAAATCATTGATAATTTAA
1 TAGTAAAT-TATTGATAAT-TAGTAGTAAATCATTGATAATTTAA
* * * *
8333012 TAGTAAATTATTGATAACTTAGTAGTAATAAATCACTAATAACTTAC
1 TAGTAAATTATTGATAA-TTAGTAG---TAAATCATTGATAATTTAA
* * * * *
8333059 TTGTAAATAAGTGTTAATTTAATAATAAATTAGTTAATCATTGATAATTTTAA
1 TAGT--A-AA---TT-A-TTGATAAT-TAGTAGTAAATCATTGATAA-TTTAA
* * * * *
8333112 -AGTAAATCATCGCA-AATTAGAAGTAAATAAGTT-ATAATTTTA
1 TAGTAAATTATTG-ATAATTAGTAGTAAATCA-TTGATAATTTAA
* * * **
8333154 TCA-TAAATTA-TCAGTAACATAGTAGTAAATAATCAATAATTTAA
1 T-AGTAAATTATTGA-TAA-TTAGTAGTAAATCATTGATAATTTAA
* * *
8333198 TAGTAAATTATTCATTATCTAGTAATAAATCATTGATAATTTAA
1 TAGTAAATTATTGATAAT-TAGTAGTAAATCATTGATAATTTAA
* * * * * * *
8333242 TAATAAATCATTAATAGCTTAGTAGTAAATTACTGATAATATAA
1 TAGTAAATTATTGATA-ATTAGTAGTAAATCATTGATAATTTAA
* * * * *
8333286 TAGTAAATCAATGATAATTTAATTGTTAATCATTGATAA
1 TAGTAAATTATTGATAA-TTAGTAGTAAATCATTGATAA
8333325 CTTTTTTTAA
Statistics
Matches: 229, Mismatches: 56, Indels: 56
0.67 0.16 0.16
Matches are distributed among these distances:
41 1 0.00
42 4 0.02
43 24 0.10
44 138 0.60
45 7 0.03
46 1 0.00
47 18 0.08
49 3 0.01
50 3 0.01
52 13 0.06
53 5 0.02
54 2 0.01
55 10 0.04
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.39
Consensus pattern (43 bp):
TAGTAAATTATTGATAATTAGTAGTAAATCATTGATAATTTAA
Found at i:8333182 original size:22 final size:22
Alignment explanation
Indices: 8333157--8333208 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
8333147 AATTTTATCA
* *
8333157 TAAATTATCAGTAACATAGTAG
1 TAAATTATCAATAACATAATAG
* **
8333179 TAAATAATCAATAATTTAATAG
1 TAAATTATCAATAACATAATAG
8333201 TAAATTAT
1 TAAATTAT
8333209 TCATTATCTA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.37
Consensus pattern (22 bp):
TAAATTATCAATAACATAATAG
Found at i:8333245 original size:22 final size:22
Alignment explanation
Indices: 8333189--8333324 Score: 119
Period size: 22 Copynumber: 6.2 Consensus size: 22
8333179 TAAATAATCA
* *
8333189 ATAATTTAATAGTAAATTATTC
1 ATAATTTAATAGTAAATCATTG
* * * *
8333211 ATTATCTAGTAATAAATCATTG
1 ATAATTTAATAGTAAATCATTG
* *
8333233 ATAATTTAATAATAAATCATTA
1 ATAATTTAATAGTAAATCATTG
** * * *
8333255 ATAGCTTAGTAGTAAATTACTG
1 ATAATTTAATAGTAAATCATTG
* *
8333277 ATAATATAATAGTAAATCAATG
1 ATAATTTAATAGTAAATCATTG
* *
8333299 ATAATTTAATTGTTAATCATTG
1 ATAATTTAATAGTAAATCATTG
8333321 ATAA
1 ATAA
8333325 CTTTTTTTAA
Statistics
Matches: 87, Mismatches: 27, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 87 1.00
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (22 bp):
ATAATTTAATAGTAAATCATTG
Found at i:8333249 original size:66 final size:66
Alignment explanation
Indices: 8333179--8333308 Score: 152
Period size: 66 Copynumber: 2.0 Consensus size: 66
8333169 AACATAGTAG
* * * * * *
8333179 TAAATAATCAATAATTTAATAGTAAATTATTCATTATCTAGTAATAAATCATTGATAATTTAATA
1 TAAATAATCAATAACTTAATAGTAAATTACTCATAATATAATAATAAATCAATGATAATTTAATA
8333244 A
66 A
* * * * * *
8333245 TAAATCATTAATAGCTTAGTAGTAAATTACTGATAATATAATAGTAAATCAATGATAATTTAAT
1 TAAATAATCAATAACTTAATAGTAAATTACTCATAATATAATAATAAATCAATGATAATTTAAT
8333309 TGTTAATCAT
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
66 52 1.00
ACGTcount: A:0.48, C:0.06, G:0.07, T:0.39
Consensus pattern (66 bp):
TAAATAATCAATAACTTAATAGTAAATTACTCATAATATAATAATAAATCAATGATAATTTAATA
A
Found at i:8333677 original size:21 final size:21
Alignment explanation
Indices: 8333653--8333705 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
8333643 TATATCATAA
*
8333653 GTTACCAAACTAATATTAAAG
1 GTTACCAAAATAATATTAAAG
* ** *
8333674 GTTATCAAAATTTTATTAAAT
1 GTTACCAAAATAATATTAAAG
8333695 GTTACCAAAAT
1 GTTACCAAAAT
8333706 GTTATAAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.36
Consensus pattern (21 bp):
GTTACCAAAATAATATTAAAG
Found at i:8333710 original size:21 final size:21
Alignment explanation
Indices: 8333666--8333710 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8333656 ACCAAACTAA
* *
8333666 TATTAAAGGTTATCAAAATTT
1 TATTAAAGGTTACCAAAATGT
*
8333687 TATTAAATGTTACCAAAATGT
1 TATTAAAGGTTACCAAAATGT
8333708 TAT
1 TAT
8333711 AAAAAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (21 bp):
TATTAAAGGTTACCAAAATGT
Found at i:8333844 original size:3 final size:3
Alignment explanation
Indices: 8333838--8333870 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
8333828 ATAATAATAA
*
8333838 TAT TAT TAT TAT TAT TAT TAT GAT TA- TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8333871 TAAAAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:8335383 original size:21 final size:21
Alignment explanation
Indices: 8335350--8335574 Score: 100
Period size: 21 Copynumber: 10.8 Consensus size: 21
8335340 AAATATATCA
*
8335350 TAAAA-TTAACAAAATTATAT
1 TAAAAGTTATCAAAATTATAT
* *
8335370 TAAAAGCTATCAAAATTACAT
1 TAAAAGTTATCAAAATTATAT
* * *
8335391 CAAGAGGTTACCAAAATTATAT
1 TAA-AAGTTATCAAAATTATAT
* * *
8335413 TAAAAATTATCAAATTTGTA-
1 TAAAAGTTATCAAAATTATAT
* * **
8335433 TCAATGATTAAAAAAATTATAT
1 TAAAAG-TTATCAAAATTATAT
* * * *
8335455 CATAAA-TTACCAAACTAATAT
1 TA-AAAGTTATCAAAATTATAT
*
8335476 TAAAAGTTATCAAAATTTTAT
1 TAAAAGTTATCAAAATTATAT
** * *
8335497 CGAATGTTA-CTAAAATTTTAT
1 TAAAAGTTATC-AAAATTATAT
* * * * *
8335518 TAAAAATTATGAAACTTTTAA
1 TAAAAGTTATCAAAATTATAT
* * *
8335539 CAAAGGTTATCAAAA-CATAT
1 TAAAAGTTATCAAAATTATAT
*
8335559 CAAAAGTTATCAAAAT
1 TAAAAGTTATCAAAAT
8335575 CAAAATTATC
Statistics
Matches: 144, Mismatches: 52, Indels: 17
0.68 0.24 0.08
Matches are distributed among these distances:
20 28 0.19
21 98 0.68
22 16 0.11
23 2 0.01
ACGTcount: A:0.51, C:0.10, G:0.06, T:0.34
Consensus pattern (21 bp):
TAAAAGTTATCAAAATTATAT
Found at i:8335450 original size:42 final size:41
Alignment explanation
Indices: 8335354--8335468 Score: 113
Period size: 43 Copynumber: 2.7 Consensus size: 41
8335344 ATATCATAAA
**
8335354 ATTAACAAAATTATATTAAAAGCTATCAAAATTACATCAAG
1 ATTAACAAAATTATATTAAAAATTATCAAAATTACATCAAG
* * **
8335395 AGGTTACCAAAATTATATTAAAAATTATCAAATTTGTATCAATG
1 A--TTAACAAAATTATATTAAAAATTATCAAAATTACATCAA-G
* * * *
8335439 ATTAAAAAAATTATATCATAAATTACCAAA
1 ATTAACAAAATTATATTAAAAATTATCAAA
8335469 CTAATATTAA
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.02
42 24 0.40
43 33 0.55
44 2 0.03
ACGTcount: A:0.52, C:0.10, G:0.05, T:0.32
Consensus pattern (41 bp):
ATTAACAAAATTATATTAAAAATTATCAAAATTACATCAAG
Found at i:8335533 original size:63 final size:63
Alignment explanation
Indices: 8335398--8335526 Score: 154
Period size: 63 Copynumber: 2.0 Consensus size: 63
8335388 CATCAAGAGG
* * *
8335398 TTACCAAAATTATATTAAAAATTATCAAATTTGTATCAATGATTAAAAAAATTATATCATAAA
1 TTACCAAACTAATATTAAAAATTATCAAATTTGTATCAATGATTAAAAAAATTATATCAAAAA
* ** * *
8335461 TTACCAAACTAATATTAAAAGTTATCAAAATTT-TATCGAATG-TTACTAAAATTTTATTAAAAA
1 TTACCAAACTAATATTAAAAATTATC-AAATTTGTATC-AATGATTAAAAAAATTATATCAAAAA
8335524 TTA
1 TTA
8335527 TGAAACTTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
63 46 0.82
64 10 0.18
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.38
Consensus pattern (63 bp):
TTACCAAACTAATATTAAAAATTATCAAATTTGTATCAATGATTAAAAAAATTATATCAAAAA
Found at i:8335585 original size:15 final size:16
Alignment explanation
Indices: 8335557--8335587 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
8335547 ATCAAAACAT
8335557 ATCAAAAGTTATCAAA
1 ATCAAAAGTTATCAAA
8335573 ATCAAAA-TTATCAAA
1 ATCAAAAGTTATCAAA
8335588 TTTTACTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.58, C:0.13, G:0.03, T:0.26
Consensus pattern (16 bp):
ATCAAAAGTTATCAAA
Found at i:8336496 original size:23 final size:23
Alignment explanation
Indices: 8336464--8336509 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
8336454 TGTTAGGAGT
8336464 CACTTAAAAATATGATTGATAAA
1 CACTTAAAAATATGATTGATAAA
*
8336487 CACTTCAAAATATGATTGATAAA
1 CACTTAAAAATATGATTGATAAA
8336510 TAAACTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.30
Consensus pattern (23 bp):
CACTTAAAAATATGATTGATAAA
Found at i:8338322 original size:22 final size:22
Alignment explanation
Indices: 8338286--8338329 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8338276 ACAATCTTAA
*
8338286 ACAAAATTAAAATATTAAAAAT
1 ACAAAAATAAAATATTAAAAAT
* *
8338308 ACAAAAATAACATATTTAAAAT
1 ACAAAAATAAAATATTAAAAAT
8338330 TTTAATATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (22 bp):
ACAAAAATAAAATATTAAAAAT
Found at i:8338402 original size:24 final size:25
Alignment explanation
Indices: 8338334--8338394 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
8338324 TAAAATTTTA
* *
8338334 ATATAAATTTTCAAAAA-AATAAATT
1 ATATAAA-TTTAAAAAATAAAAAATT
8338359 ATATAAATTTAAAAAATAAAAAATT
1 ATATAAATTTAAAAAATAAAAAATT
*
8338384 AT-TATATTTAA
1 ATATAAATTTAA
8338395 TATATAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 16 0.50
25 16 0.50
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (25 bp):
ATATAAATTTAAAAAATAAAAAATT
Found at i:8340232 original size:2 final size:2
Alignment explanation
Indices: 8340225--8340261 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8340215 AATGGTAGGT
8340225 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8340262 TTAGTGCATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8344393 original size:30 final size:30
Alignment explanation
Indices: 8344313--8344469 Score: 144
Period size: 30 Copynumber: 5.3 Consensus size: 30
8344303 ATAATATTTT
*
8344313 TTTTTGAATTTTATCATTT-TATTTAAATAAA
1 TTTTT-AATTTT-TAATTTATATTTAAATAAA
* **
8344344 TTCTT-ATATTTT-A-TTATATTTTTATAAAA
1 TTTTTAAT-TTTTAATTTATATTTAAAT-AAA
*
8344373 TTTTT-ATTTTTAATTTATATTTAAATAAG
1 TTTTTAATTTTTAATTTATATTTAAATAAA
** *
8344402 TTTTTAAACTTTAATTTATATTCAAATAAA
1 TTTTTAATTTTTAATTTATATTTAAATAAA
* *
8344432 TTTTTAATATTTAATTTATATCTAAATAAA
1 TTTTTAATTTTTAATTTATATTTAAATAAA
*
8344462 ATTTTAAT
1 TTTTTAAT
8344470 ATAAATCAAT
Statistics
Matches: 104, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
27 2 0.02
28 12 0.12
29 20 0.19
30 66 0.63
31 4 0.04
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.57
Consensus pattern (30 bp):
TTTTTAATTTTTAATTTATATTTAAATAAA
Found at i:8344530 original size:31 final size:30
Alignment explanation
Indices: 8344492--8344587 Score: 117
Period size: 28 Copynumber: 3.2 Consensus size: 30
8344482 TTTATTTGAA
*
8344492 ATAAAAATGTATATAAATTATAAATAAAAAT
1 ATAAAAATTTATATAAA-TATAAATAAAAAT
*
8344523 ATAAAAATTTATTTAAATAT-AATAAAAAT
1 ATAAAAATTTATATAAATATAAATAAAAAT
*
8344552 A-CAAAATTTATATAAATA-AAATAAATAAT
1 ATAAAAATTTATATAAATATAAATAAA-AAT
*
8344581 TTAAAAA
1 ATAAAAA
8344588 CTTTTTTAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
28 21 0.38
29 13 0.23
30 7 0.12
31 15 0.27
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (30 bp):
ATAAAAATTTATATAAATATAAATAAAAAT
Found at i:8344573 original size:22 final size:24
Alignment explanation
Indices: 8344533--8344585 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
8344523 ATAAAAATTT
8344533 ATTTAAATATAATAAAAATACAA-A
1 ATTTAAATATAATAAAAATA-AATA
*
8344557 ATTTATATA-AAT-AAAATAAATA
1 ATTTAAATATAATAAAAATAAATA
8344579 ATTTAAA
1 ATTTAAA
8344586 AACTTTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 2 0.08
22 13 0.50
23 3 0.12
24 8 0.31
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (24 bp):
ATTTAAATATAATAAAAATAAATA
Found at i:8351545 original size:63 final size:63
Alignment explanation
Indices: 8351349--8351632 Score: 222
Period size: 63 Copynumber: 4.4 Consensus size: 63
8351339 ATTCATAAAC
* ** *
8351349 ACAAATGCCTTAATTGATCATGCTTTATAAATAA-ATAATAA-AATCAATTAAGGCATTCACCTA
1 ACAAATGCCTTAATTGATGATG-TTT-TAAATAATATAA-AATAATCAATTAAGGCATTCATATT
8351412 A
63 A
* * ** * * * * **
8351413 ACAAATGCCTTAATTGATGATGTATTCAACATATTATGCAATGTATCAATTAAGGCGTTTAAAGC
1 ACAAATGCCTTAATTGATGATGT-TTTAA-ATAATATAAAAT-AATCAATTAAGGCATTCATATT
8351478 A
63 A
* *
8351479 ACAAATACCTTAATTGATGATGTTTTAAATAATATAAAATTATCAATTAAGGCATTCATATTA
1 ACAAATGCCTTAATTGATGATGTTTTAAATAATATAAAATAATCAATTAAGGCATTCATATTA
* * *
8351542 ACAAATGCCTTATTTGATGATGTTATATAAAT--TATAAAACTAAT-AATTAAGGTGA-TCGTA-
1 ACAAATGCCTTAATTGATGATGTT-T-TAAATAATATAAAA-TAATCAATTAAGG-CATTCATAT
8351602 TA
62 TA
**
8351604 GATCAAACACCTTAATTGATGATGTTTTA
1 -A-CAAATGCCTTAATTGATGATGTTTTA
8351633 TAAATTAAAA
Statistics
Matches: 179, Mismatches: 30, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
62 4 0.02
63 64 0.36
64 62 0.35
65 11 0.06
66 38 0.21
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35
Consensus pattern (63 bp):
ACAAATGCCTTAATTGATGATGTTTTAAATAATATAAAATAATCAATTAAGGCATTCATATTA
Found at i:8351637 original size:129 final size:128
Alignment explanation
Indices: 8351356--8351637 Score: 292
Period size: 129 Copynumber: 2.2 Consensus size: 128
8351346 AACACAAATG
* *
8351356 CCTTAATTGATCATGCTTTATAAATAAATAATAAAATCAATTAAGGCATTCACCTAAACAAATGC
1 CCTTAATTGATGATG-TTTATAAATAAATAATAAAATCAATTAAGGCATTCACATAAACAAATGC
** * * *
8351421 CTTAATTGATGATGTATTCAACATATTATGCAATGTATCAATTAAGGCGTTTAAAGCAACAAATA
65 CTTAATTGATGATGTATT-AACATATTATAAAATGAATCAATTAAGGCGTGTAAAGCAACAAACA
* * *
8351486 CCTTAATTGATGATGTTT-TAAATAATATAA-AATTATCAATTAAGGCATTCATATTAACAAATG
1 CCTTAATTGATGATGTTTATAAATAA-ATAATAA-AATCAATTAAGGCATTCACATAAACAAATG
* * * *
8351549 CCTTATTTGATGATGT-TATATA-A-ATTATAAAACT-AAT-AATTAAGGTGATCGTATAG-ATC
64 CCTTAATTGATGATGTAT-TA-ACATATTATAAAA-TGAATCAATTAAGGCG-T-GTAAAGCAAC
8351608 AAACA
124 AAACA
8351613 CCTTAATTGATGATGTTTTATAAAT
1 CCTTAATTGATGATG-TTTATAAAT
8351638 TAAAACAATA
Statistics
Matches: 129, Mismatches: 14, Indels: 19
0.80 0.09 0.12
Matches are distributed among these distances:
126 9 0.07
127 31 0.24
128 20 0.16
129 55 0.43
130 14 0.11
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (128 bp):
CCTTAATTGATGATGTTTATAAATAAATAATAAAATCAATTAAGGCATTCACATAAACAAATGCC
TTAATTGATGATGTATTAACATATTATAAAATGAATCAATTAAGGCGTGTAAAGCAACAAACA
Found at i:8358083 original size:62 final size:62
Alignment explanation
Indices: 8357980--8358125 Score: 165
Period size: 62 Copynumber: 2.4 Consensus size: 62
8357970 AAAAAAAAAA
* * *
8357980 AAGGGGATTATTGAAAGTGTTTTTCGCCAAAAACACATTCAATTATCC-CATC-TAAAAAATTG
1 AAGGGGATTATTCAAAGTGTTTTTCGACAAAAACACATTCAATAATCCAC-TCAT-AAAAATTG
* *
8358042 AAGGGGATTATTCAAAGTGTTTTT-GATAAAAAC-CATCTTCAATAATCCACTCATAAAAATTT
1 AAGGGGATTATTCAAAGTGTTTTTCGACAAAAACACA--TTCAATAATCCACTCATAAAAATTG
* *
8358104 AAGGAGATTATTCAAGGTGTTT
1 AAGGGGATTATTCAAAGTGTTT
8358126 CTGTCAGAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
60 2 0.03
61 7 0.10
62 62 0.85
63 2 0.03
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (62 bp):
AAGGGGATTATTCAAAGTGTTTTTCGACAAAAACACATTCAATAATCCACTCATAAAAATTG
Found at i:8358470 original size:187 final size:179
Alignment explanation
Indices: 8358048--8358485 Score: 427
Period size: 186 Copynumber: 2.4 Consensus size: 179
8358038 ATTGAAGGGG
* * *
8358048 ATTATTCAAAGTGTTTTTGATAAAAACCATCTTCAATAATCCACTCATAAAAATTTAAGGAGATT
1 ATTATTAAAAGTGTTTTTG-TAAAAA-CACCTTCAATAAT-CACTCATAAAAATTTAAGGGGATT
* * * * * * *
8358113 ATTCAAGGTGTTTCTGTCAGAAACGTCTTTAATAACCCGATTTAATTTTTTGTAAGGGATTATTT
63 ATTCAAGATATTTCTGCCAGAAACGTCTTCAATAACCCCATTCAATTTTTTGTAAGGGATTATTA
* * *
8358178 AAGGCATTTTGAGGTAAAAATGCATTGAATAATCCTAAAAAAAATGGGTAGAG
128 AAGACATTTTGAGGTAAAAATGCATTGAATAATCCTAAAAAAAAT-GGTAAAA
* * ** * * *
8358231 ATTATTGAAGGCAT-TTTTTACCAAAAATACCTTGAATAATCCCTTCATAAAAATTTAAAGGGTG
1 ATTATTAAAAG--TGTTTTT-GTAAAAACACCTTCAATAATCAC-TCATAAAAATTT-AAGGG-G
* *
8358295 ATTATTCAAGATATTTTTGACCTA-AAATGTCTTCAATAACCCCATTCAATTTTTTGTAAGGGAT
60 ATTATTCAAGATATTTCTG-CC-AGAAACGTCTTCAATAACCCCATTCAATTTTTTGTAAGGGAT
* *
8358359 TATTAAAGACATTTTATAGGCT-AAAATGCCTTGAATAATCCTATCATAAAAAAT-G-AAAA
123 TATTAAAGACATTTT-GAGG-TAAAAATGCATTGAATAATCCTA--A-AAAAAATGGTAAAA
* *
8358418 ATTATTAAAAGTGTTTTTGGTAGAAAACACCTTCAATGATCATCTCATAAAAATTGAAGGGGATT
1 ATTATTAAAAGTGTTTTT-GTA-AAAACACCTTCAATAATCA-CTCATAAAAATTTAAGGGGATT
8358483 ATT
63 ATT
8358486 GAAAGCGATT
Statistics
Matches: 206, Mismatches: 33, Indels: 30
0.77 0.12 0.11
Matches are distributed among these distances:
182 2 0.01
183 31 0.15
184 14 0.07
185 26 0.13
186 61 0.30
187 61 0.30
188 3 0.01
189 1 0.00
190 7 0.03
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (179 bp):
ATTATTAAAAGTGTTTTTGTAAAAACACCTTCAATAATCACTCATAAAAATTTAAGGGGATTATT
CAAGATATTTCTGCCAGAAACGTCTTCAATAACCCCATTCAATTTTTTGTAAGGGATTATTAAAG
ACATTTTGAGGTAAAAATGCATTGAATAATCCTAAAAAAAATGGTAAAA
Found at i:8359500 original size:18 final size:19
Alignment explanation
Indices: 8359451--8359507 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
8359441 TTACATACTA
8359451 TTTAGATTATATATAATTG
1 TTTAGATTATATATAATTG
* *
8359470 TTT-G-TTGTTTATATATTG
1 TTTAGATTATATATA-ATTG
8359488 TTTAGATTATATATAATTG
1 TTTAGATTATATATAATTG
8359507 T
1 T
8359508 ATATTGTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 7 0.23
18 8 0.26
19 9 0.29
20 7 0.23
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (19 bp):
TTTAGATTATATATAATTG
Found at i:8359694 original size:11 final size:10
Alignment explanation
Indices: 8359674--8359753 Score: 62
Period size: 11 Copynumber: 8.3 Consensus size: 10
8359664 TTAGATTATA
8359674 TATAATTGTT
1 TATAATTGTT
8359684 TATAGATTGTT
1 TATA-ATTGTT
* * *
8359695 TA-CATTATA
1 TATAATTGTT
8359704 TATAATTG-T
1 TATAATTGTT
8359713 T-T-ATTGTT
1 TATAATTGTT
8359721 TATATATTGTT
1 TATA-ATTGTT
* *
8359732 TAT-ATTATA
1 TATAATTGTT
8359741 TATAATTGTT
1 TATAATTGTT
8359751 TAT
1 TAT
8359754 TGTTTGACCT
Statistics
Matches: 53, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
7 4 0.08
8 3 0.06
9 15 0.28
10 14 0.26
11 17 0.32
ACGTcount: A:0.31, C:0.01, G:0.09, T:0.59
Consensus pattern (10 bp):
TATAATTGTT
Found at i:8359730 original size:37 final size:37
Alignment explanation
Indices: 8359678--8359758 Score: 144
Period size: 37 Copynumber: 2.2 Consensus size: 37
8359668 ATTATATATA
8359678 ATTGTTTATAGATTGTTTACATTATATATAATTGTTT
1 ATTGTTTATAGATTGTTTACATTATATATAATTGTTT
* *
8359715 ATTGTTTATATATTGTTTATATTATATATAATTGTTT
1 ATTGTTTATAGATTGTTTACATTATATATAATTGTTT
8359752 ATTGTTT
1 ATTGTTT
8359759 GACCTTTTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.28, C:0.01, G:0.10, T:0.60
Consensus pattern (37 bp):
ATTGTTTATAGATTGTTTACATTATATATAATTGTTT
Found at i:8359753 original size:19 final size:19
Alignment explanation
Indices: 8359684--8359753 Score: 90
Period size: 19 Copynumber: 3.7 Consensus size: 19
8359674 TATAATTGTT
*
8359684 TATAGATTGTTTACATTATA
1 TATA-ATTGTTTATATTATA
*
8359704 TATAATTGTTTAT-TGTTTA
1 TATAATTGTTTATAT-TATA
8359723 TAT-ATTGTTTATATTATA
1 TATAATTGTTTATATTATA
8359741 TATAATTGTTTAT
1 TATAATTGTTTAT
8359754 TGTTTGACCT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
18 16 0.36
19 24 0.55
20 4 0.09
ACGTcount: A:0.31, C:0.01, G:0.09, T:0.59
Consensus pattern (19 bp):
TATAATTGTTTATATTATA
Found at i:8359758 original size:242 final size:240
Alignment explanation
Indices: 8359332--8359837 Score: 728
Period size: 242 Copynumber: 2.1 Consensus size: 240
8359322 AGGTGGTGGT
* *
8359332 TTTGTAATCAAATACTATATATATAGTGGCTTTTTCAATTAAATATATGTAATAAAGCATTTGGC
1 TTTGTAATCAAATACTATATATATAGTGCCTTTTTCAATTAAATATATGT-AGAAAGCATTTGGC
** * *
8359397 AGCATAATAAGGTTTATATAATTGTTTAGATTATACATAATTGCTTACATACTATTTAGATTATA
65 AGCATAATAAGGTTTATATAATCATTTAGATTATACATAATTGCTTACAGACTATTTACATTATA
* * *
8359462 TATAATTGTTTGTTGTTTATATATTGTTTAGATTATATATAATTGTATATTGTTTGGCTTTTTCA
130 TATAATTGTTTATTGTTTATATATTGTTTAGATTATATATAATTGTATATTGTTTGACCTTTTCA
*
8359527 ATTAAATATATATCATAAAAATACATAATTGTTTATATGGTGAG-AGCA
195 ATTAAATATATA--ATAAAAATACATAATTGTTTACATGGTG-GTAGCA
* * ***
8359575 TTTGTAATCAAATACTATATATATGGTGCCTTTTTTAATTAAATATATGGT-GCCGGCATTTGGC
1 TTTGTAATCAAATACTATATATATAGTGCCTTTTTCAATTAAATATAT-GTAGAAAGCATTTGGC
* * * * *
8359639 AGCATAATAAGGTTTATATAATCATTTAGATTATATATAATTGTTTATAGATTGTTTACATTATA
65 AGCATAATAAGGTTTATATAATCATTTAGATTATACATAATTGCTTACAGACTATTTACATTATA
* *
8359704 TATAATTGTTTATTGTTTATATATTGTTTATATTATATATAATTGTTTATTGTTTGACCTTTTCA
130 TATAATTGTTTATTGTTTATATATTGTTTAGATTATATATAATTGTATATTGTTTGACCTTTTCA
* *
8359769 ATTAAATATATAATAAAAATATATAATTGTTTACATGGTGGTGGCA
195 ATTAAATATATAATAAAAATACATAATTGTTTACATGGTGGTAGCA
*
8359815 TTTGTAAACAAATACTATATATA
1 TTTGTAATCAAATACTATATATA
8359838 CGTTGGTTGT
Statistics
Matches: 236, Mismatches: 25, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
239 1 0.00
240 51 0.22
242 137 0.58
243 45 0.19
244 2 0.01
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.46
Consensus pattern (240 bp):
TTTGTAATCAAATACTATATATATAGTGCCTTTTTCAATTAAATATATGTAGAAAGCATTTGGCA
GCATAATAAGGTTTATATAATCATTTAGATTATACATAATTGCTTACAGACTATTTACATTATAT
ATAATTGTTTATTGTTTATATATTGTTTAGATTATATATAATTGTATATTGTTTGACCTTTTCAA
TTAAATATATAATAAAAATACATAATTGTTTACATGGTGGTAGCA
Found at i:8360408 original size:3 final size:3
Alignment explanation
Indices: 8360394--8360450 Score: 105
Period size: 3 Copynumber: 18.7 Consensus size: 3
8360384 GTTTTTTACC
8360394 TTA TTA TGTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8360440 TTA TTA TTA TT
1 TTA TTA TTA TT
8360451 GCTTTTCTTT
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 50 0.94
4 3 0.06
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8367499 original size:15 final size:15
Alignment explanation
Indices: 8367479--8367514 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
8367469 GATGTAACTC
*
8367479 TTTATCTATGTTTGT
1 TTTATCGATGTTTGT
8367494 TTTATCGATGTTTGT
1 TTTATCGATGTTTGT
8367509 TTTATC
1 TTTATC
8367515 AGACTTGGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.14, C:0.08, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTATCGATGTTTGT
Found at i:8367884 original size:54 final size:56
Alignment explanation
Indices: 8367817--8367933 Score: 141
Period size: 54 Copynumber: 2.1 Consensus size: 56
8367807 AACATGTAAG
* * * **
8367817 TCTATACTGACAATCTCTAATCGTCGATATACCTAA-AAAATTAAAGCATACAA-T
1 TCTATACTAACAATCTCTAACCATCGATATACCTAAGAAAATTAAAAAATACAAGT
* **
8367871 TCTATACTAACAATCTTTAACCATCGATATAGGTAAGAAAATTAAAAAATACAAGT
1 TCTATACTAACAATCTCTAACCATCGATATACCTAAGAAAATTAAAAAATACAAGT
8367927 T-TATACT
1 TCTATACT
8367934 GAAAGATGCT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
54 30 0.57
55 21 0.40
56 2 0.04
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (56 bp):
TCTATACTAACAATCTCTAACCATCGATATACCTAAGAAAATTAAAAAATACAAGT
Found at i:8369826 original size:13 final size:13
Alignment explanation
Indices: 8369808--8369832 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8369798 TTAAATTTTA
8369808 TATTTGATTATTG
1 TATTTGATTATTG
8369821 TATTTGATTATT
1 TATTTGATTATT
8369833 ATGAATTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (13 bp):
TATTTGATTATTG
Found at i:8369856 original size:24 final size:22
Alignment explanation
Indices: 8369827--8369872 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
8369817 ATTGTATTTG
8369827 ATTATTATGAATTTGACTATGTAT
1 ATTATTATGAATTT-A-TATGTAT
* *
8369851 ATTATTGTGTATTTATATGTAT
1 ATTATTATGAATTTATATGTAT
8369873 CTCTTTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 7 0.35
23 1 0.05
24 12 0.60
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.54
Consensus pattern (22 bp):
ATTATTATGAATTTATATGTAT
Found at i:8370042 original size:14 final size:14
Alignment explanation
Indices: 8370025--8370059 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
8370015 TTAAAATATT
8370025 TAAATTAACAAAAA
1 TAAATTAACAAAAA
*
8370039 TAAATTAATAAAAA
1 TAAATTAACAAAAA
8370053 TAAATTA
1 TAAATTA
8370060 GGAATAAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (14 bp):
TAAATTAACAAAAA
Found at i:8376353 original size:18 final size:18
Alignment explanation
Indices: 8376326--8376364 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
8376316 ATAATGTATG
*
8376326 AAACAAAAAAGACAAAGA
1 AAACAAAAAAAACAAAGA
* *
8376344 AAACACAAAAAACATAGA
1 AAACAAAAAAAACAAAGA
8376362 AAA
1 AAA
8376365 ATTAGTAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.77, C:0.13, G:0.08, T:0.03
Consensus pattern (18 bp):
AAACAAAAAAAACAAAGA
Found at i:8376970 original size:18 final size:18
Alignment explanation
Indices: 8376930--8376970 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8376920 TATTAAAAAC
*
8376930 AAAAATAAATAACAATTT
1 AAAAATAAATAACAAATT
*
8376948 AAAAATAAATGACATAATT
1 AAAAATAAATAACA-AATT
8376967 AAAA
1 AAAA
8376971 GAGGCATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.24
Consensus pattern (18 bp):
AAAAATAAATAACAAATT
Found at i:8378138 original size:26 final size:25
Alignment explanation
Indices: 8378080--8378256 Score: 111
Period size: 26 Copynumber: 7.1 Consensus size: 25
8378070 GGGGCTTGGT
8378080 TTAGGTTTAGATTTAAGG-TTAGGG
1 TTAGGTTTAGATTTAAGGTTTAGGG
*
8378104 TTGAGGGTTTAGGATTTAAGGTTTAGGA
1 TT-A-GGTTTA-GATTTAAGGTTTAGGG
* *
8378132 TTAGGTTTAGGGTTTAGGGTTTAGGG
1 TTAGGTTTA-GATTTAAGGTTTAGGG
* *
8378158 TTTGG-TTAGAGTCTAAGGTTTAGGG
1 TTAGGTTTAGA-TTTAAGGTTTAGGG
**
8378183 TTTAGG--T---TTTAAGGTTTAGAT
1 -TTAGGTTTAGATTTAAGGTTTAGGG
* *
8378204 TTTGGTTTTAG-TTTTAGGTTTAGGG
1 TTAGG-TTTAGATTTAAGGTTTAGGG
* *
8378229 TTTAGGGTTT-GGTTTAAGGTTAAGGG
1 -TTA-GGTTTAGATTTAAGGTTTAGGG
8378255 TT
1 TT
8378257 TGACTTAGGG
Statistics
Matches: 120, Mismatches: 19, Indels: 27
0.72 0.11 0.16
Matches are distributed among these distances:
20 4 0.03
21 11 0.09
23 1 0.01
24 3 0.03
25 31 0.26
26 51 0.43
27 12 0.10
28 7 0.06
ACGTcount: A:0.20, C:0.01, G:0.34, T:0.45
Consensus pattern (25 bp):
TTAGGTTTAGATTTAAGGTTTAGGG
Found at i:8378160 original size:7 final size:7
Alignment explanation
Indices: 8378077--8378301 Score: 128
Period size: 7 Copynumber: 34.7 Consensus size: 7
8378067 CTAGGGGCTT
8378077 GGTTTA-
1 GGTTTAG
8378083 GGTTTA-
1 GGTTTAG
* *
8378089 GATTTAA
1 GGTTTAG
8378096 GG-TTAG
1 GGTTTAG
*
8378102 GGTTGAG
1 GGTTTAG
8378109 GGTTTAG
1 GGTTTAG
* *
8378116 GATTTAA
1 GGTTTAG
8378123 GGTTTA-
1 GGTTTAG
*
8378129 GGATTA-
1 GGTTTAG
8378135 GGTTTAG
1 GGTTTAG
8378142 GGTTTAG
1 GGTTTAG
8378149 GGTTTAG
1 GGTTTAG
8378156 GGTTT--
1 GGTTTAG
8378161 GG-TTAG
1 GGTTTAG
* * *
8378167 AGTCTAA
1 GGTTTAG
8378174 GGTTTAG
1 GGTTTAG
8378181 GGTTTAG
1 GGTTTAG
* *
8378188 GTTTTAA
1 GGTTTAG
8378195 GGTTTA-
1 GGTTTAG
* *
8378201 GATTTTG
1 GGTTTAG
*
8378208 GTTTTA-
1 GGTTTAG
*
8378214 GTTTTA-
1 GGTTTAG
8378220 GGTTTAG
1 GGTTTAG
8378227 GGTTTAG
1 GGTTTAG
8378234 GGTTT--
1 GGTTTAG
*
8378239 GGTTTAA
1 GGTTTAG
*
8378246 GGTTAAG
1 GGTTTAG
8378253 GGTTT--
1 GGTTTAG
**
8378258 GACTTAG
1 GGTTTAG
8378265 GGTTTAG
1 GGTTTAG
8378272 GGTTTTA-
1 GG-TTTAG
*
8378279 -GTTTAA
1 GGTTTAG
8378285 GGTTT--
1 GGTTTAG
8378290 GGTTTAG
1 GGTTTAG
8378297 GGTTT
1 GGTTT
8378302 GTATGGAGAA
Statistics
Matches: 171, Mismatches: 31, Indels: 33
0.73 0.13 0.14
Matches are distributed among these distances:
4 2 0.01
5 19 0.11
6 43 0.25
7 103 0.60
8 4 0.02
ACGTcount: A:0.19, C:0.01, G:0.35, T:0.46
Consensus pattern (7 bp):
GGTTTAG
Found at i:8378199 original size:46 final size:46
Alignment explanation
Indices: 8378135--8378238 Score: 136
Period size: 46 Copynumber: 2.3 Consensus size: 46
8378125 TTTAGGATTA
* *
8378135 GGTTTAGGGTTTAGGGTTTAGGGTTTGGTTAGAGTCTAAGGTTTAG
1 GGTTTAGGGTTTAAGGTTTAGAGTTTGGTTAGAGTCTAAGGTTTAG
* * ** * *
8378181 GGTTTAGGTTTTAAGGTTTAGATTTTGGTTTTAGTTTTAGGTTTAG
1 GGTTTAGGGTTTAAGGTTTAGAGTTTGGTTAGAGTCTAAGGTTTAG
8378227 GGTTTAGGGTTT
1 GGTTTAGGGTTT
8378239 GGTTTAAGGT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.16, C:0.01, G:0.35, T:0.48
Consensus pattern (46 bp):
GGTTTAGGGTTTAAGGTTTAGAGTTTGGTTAGAGTCTAAGGTTTAG
Found at i:8378273 original size:19 final size:19
Alignment explanation
Indices: 8378223--8378276 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
8378213 AGTTTTAGGT
**
8378223 TTAGGGTTTAGGGTTTGGT
1 TTAGGGTTTAGGGTTTGAC
* *
8378242 TTAAGGTTAAGGGTTTGAC
1 TTAGGGTTTAGGGTTTGAC
8378261 TTAGGGTTTAGGGTTT
1 TTAGGGTTTAGGGTTT
8378277 TAGTTTAAGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.17, C:0.02, G:0.37, T:0.44
Consensus pattern (19 bp):
TTAGGGTTTAGGGTTTGAC
Found at i:8378297 original size:32 final size:33
Alignment explanation
Indices: 8378077--8378301 Score: 145
Period size: 32 Copynumber: 6.9 Consensus size: 33
8378067 CTAGGGGCTT
* *
8378077 GGTTTAGGTTT-AGATTTAAGG-TTAGGGTTGAG
1 GGTTTAGGTTTAAGGTTT-AGGTTTAGGGTTTAG
*
8378109 GGTTTAGGATTTAAGGTTTAGGATTA-GGTTTAG
1 GGTTTAGG-TTTAAGGTTTAGGTTTAGGGTTTAG
* * * *
8378142 GGTTTAGGGTTTAGGGTTT-GG-TTAGAGTCTAA
1 GGTTTA-GGTTTAAGGTTTAGGTTTAGGGTTTAG
* *
8378174 GGTTTAGGGTTT-AGGTTTTAAGGTTTA-GATTTTG
1 GGTTTA-GGTTTAAGG-TTT-AGGTTTAGGGTTTAG
* *
8378208 GTTTTA-GTTTTAGGTTTAGGGTTTAGGGTTT--
1 GGTTTAGGTTTAAGGTTTA-GGTTTAGGGTTTAG
**
8378239 GGTTTAAGG-TTAAGGGTTT-GACTTAGGGTTTAG
1 GGTTT-AGGTTTAA-GGTTTAGGTTTAGGGTTTAG
8378272 GGTTTTA-GTTTAAGGTTT-GGTTTAGGGTTT
1 GG-TTTAGGTTTAAGGTTTAGGTTTAGGGTTT
8378302 GTATGGAGAA
Statistics
Matches: 154, Mismatches: 20, Indels: 38
0.73 0.09 0.18
Matches are distributed among these distances:
31 20 0.13
32 62 0.40
33 47 0.31
34 22 0.14
35 3 0.02
ACGTcount: A:0.19, C:0.01, G:0.35, T:0.46
Consensus pattern (33 bp):
GGTTTAGGTTTAAGGTTTAGGTTTAGGGTTTAG
Found at i:8382525 original size:24 final size:25
Alignment explanation
Indices: 8382498--8382548 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
8382488 TGATTTTTTT
* *
8382498 TATTTAATTTAGATTAAA-TTTAAA
1 TATTAAATTTAGATCAAATTTTAAA
8382522 TATTAAATTTAGATCAAATTTTAAA
1 TATTAAATTTAGATCAAATTTTAAA
8382547 TA
1 TA
8382549 AAAAAATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (25 bp):
TATTAAATTTAGATCAAATTTTAAA
Found at i:8382596 original size:17 final size:18
Alignment explanation
Indices: 8382576--8382612 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
8382566 TGAACTTAAC
8382576 AAAATTATATAT-TTTTT
1 AAAATTATATATATTTTT
*
8382593 AAAATTTTATATATTTTT
1 AAAATTATATATATTTTT
8382611 AA
1 AA
8382613 TTTTATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
AAAATTATATATATTTTT
Found at i:8383312 original size:18 final size:18
Alignment explanation
Indices: 8383291--8383325 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8383281 TGAGATTTAT
8383291 AAAATTATAAAATTATTA
1 AAAATTATAAAATTATTA
*
8383309 AAAATTATTAAATTATT
1 AAAATTATAAAATTATT
8383326 TTATATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AAAATTATAAAATTATTA
Found at i:8383437 original size:13 final size:13
Alignment explanation
Indices: 8383419--8383452 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
8383409 CATAATTTTT
8383419 AAATAAAAAATCA
1 AAATAAAAAATCA
*
8383432 AAATAAAAAATGA
1 AAATAAAAAATCA
8383445 AAA-AAAAA
1 AAATAAAAA
8383453 TTAATTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.12
Consensus pattern (13 bp):
AAATAAAAAATCA
Found at i:8385624 original size:308 final size:301
Alignment explanation
Indices: 8385033--8385808 Score: 864
Period size: 308 Copynumber: 2.6 Consensus size: 301
8385023 GAATTTTCAG
* * * *
8385033 CTTTCTCAAAGTCATTGCATTTTAATATGCACAAAATACTATGTAGTTCAATACTAAATTTTCTA
1 CTTTCACAAAGTCATTGCATCTTAATATGCACAAAATACTATATAGTTCAATACTAAATTTCCTA
* ** * * *
8385098 TAATGTTTATACTTTTAATTA-TCATAAAGATAGTTCATCAACAATCACAATACACAAGTAGAAT
66 CAATGTTTATGGTTTAAATTACT-ATAAAGATAGCTCATCAACAATCACAATACACAACTAGAAT
* *** * * * * * * *
8385162 CACAAAGCAAAATGCCCAATAACTTTCTCCTTTCACAATACGTATAAAACTCTATTTAGTTCAAT
130 CACAAAGTAAAATATACAATAATTTTCACCTTTCATAATACATACAAAACACTATTTACTTCAAT
* * * *
8385227 ACTAAATTTCCTCTAATATATAGGCTTTTAATTACTATACTATCTACTACATAAACAATTACAAT
195 ACTAAATTTCCTCTAATATATAAGCTTTCAATTACTACACTATCTACTACATAAACAATCACAAT
* * * * **
8385292 TCACAACTAGAATCACAAAGCAAAATGCTACATTATCTAGTTCAATGGC
260 ACACAACTAAAATCACAAAGCAAAA---AACA-TA-ATAGTT--ATCAC
* *
8385341 CTTTCACAAAATCATTGCATCTTAATATGCAAAAAATACTATATAGTTCAATACTAAATTTCCTA
1 CTTTCACAAAGTCATTGCATCTTAATATGCACAAAATACTATATAGTTCAATACTAAATTTCCTA
* *
8385406 CAATGTTTATGGTTTCAATTACTATAAAGATAGCTCATCAACAATCACAATACACAACTAAAATC
66 CAATGTTTATGGTTTAAATTACTATAAAGATAGCTCATCAACAATCACAATACACAACTAGAATC
* *
8385471 ACAAAGTAAAATATAAAACAATTTTCACCTTTCATAATACATACAAAACACTATCTT-CTTCAAT
131 ACAAAGTAAAATATACAATAATTTTCACCTTTCATAATACATACAAAACACTAT-TTACTTCAAT
* * *
8385535 ACTAAATTTCCTAC-AATGTATAAGCTTTCAATTACTACACTATCTACTTCATCAACAATCACAA
195 ACTAAATTTCCT-CTAATATATAAGCTTTCAATTACTACACTATCTACTACATAAACAATCACAA
* * *
8385599 TACACAAAC-AAAATTACATAGCAAAAAACATAATAGTTTTCAC
259 TACAC-AACTAAAATCACAAAGCAAAAAACATAATAGTTATCAC
* * * * *
8385642 CTTTCACAAAGTCATTGCATCTCAATATGCACAAAATACTATCTAGTTCAATATTGAATTTCTTA
1 CTTTCACAAAGTCATTGCATCTTAATATGCACAAAATACTATATAGTTCAATACTAAATTTCCTA
* * * ** * *
8385707 CAATG-TGA-GGCTTTAAATTACTACATTATCTA-CTTCATCAACAATCATAATACACAACCAGA
66 CAATGTTTATGG-TTTAAATTACTATA-AAGATAGC-TCATCAACAATCACAATACACAACTAGA
* *
8385769 ATCACAAAGTAAAATATGCAATAGTTTTCACCTTTCATAA
128 ATCACAAAGTAAAATATACAATAATTTTCACCTTTCATAA
8385809 AATCATTGCA
Statistics
Matches: 399, Mismatches: 62, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
299 2 0.01
300 15 0.04
301 129 0.32
303 5 0.01
304 2 0.01
305 3 0.01
308 236 0.59
309 7 0.02
ACGTcount: A:0.41, C:0.20, G:0.06, T:0.33
Consensus pattern (301 bp):
CTTTCACAAAGTCATTGCATCTTAATATGCACAAAATACTATATAGTTCAATACTAAATTTCCTA
CAATGTTTATGGTTTAAATTACTATAAAGATAGCTCATCAACAATCACAATACACAACTAGAATC
ACAAAGTAAAATATACAATAATTTTCACCTTTCATAATACATACAAAACACTATTTACTTCAATA
CTAAATTTCCTCTAATATATAAGCTTTCAATTACTACACTATCTACTACATAAACAATCACAATA
CACAACTAAAATCACAAAGCAAAAAACATAATAGTTATCAC
Found at i:8385751 original size:158 final size:159
Alignment explanation
Indices: 8385513--8386113 Score: 567
Period size: 158 Copynumber: 3.9 Consensus size: 159
8385503 CATAATACAT
** *
8385513 ACAAAACACTATCTTCTTCAATACTAAATTTCCTACAATG-TATAAGCTTTCAATTACTACACTA
1 ACAAAACACTATCTAGTTCAATACTAAATTTCCTACAATGAT-TAGGCTTTCAATTACTACACTA
* * *
8385577 TCTACTTCATCAACAATCACAATACACAAACAAAATTACATAGCAAAAAACATAATAGTTTTCAC
65 TCTACTTCATCAACAATCACAATACACAAACAAAATCACAAAGCAAAAAACACAATAGTTTTCAC
*
8385642 CTTTCACAAAGTCATTGCATCTCAATATGC
130 CTTTCACAAAATCATTGCATCTCAATATGC
* * * * * * *
8385672 ACAAAATACTATCTAGTTCAATATTGAATTTCTTACAATG-TGAGGCTTTAAATTACTACATTAT
1 ACAAAACACTATCTAGTTCAATACTAAATTTCCTACAATGATTAGGCTTTCAATTACTACACTAT
* * * * * **
8385736 CTACTTCATCAACAATCATAATACACAACCAGAATCACAAAGTAAAATATGCAATAGTTTTCACC
66 CTACTTCATCAACAATCACAATACACAAACAAAATCACAAAGCAAAAAACACAATAGTTTTCACC
* *
8385801 TTTCATAAAATCATTGCATCTCAAT-TCAC
131 TTTCACAAAATCATTGCATCTCAATAT-GC
** * * * * * *
8385830 ACAAAACACCGTATAGTTCAATACTAAATTTCCAATAGTGTTTAGGCTTTTAATTACTACACTAT
1 ACAAAACACTATCTAGTTCAATACTAAATTTCCTACAATGATTAGGCTTTCAATTACTACACTAT
* * * *
8385895 CTACTTCATC-A-AACCAAAAT-CACAAAGTAAAAT-AC---G----TAA-A-AAT-G--TTCAC
66 CTACTTCATCAACAATCACAATACACAAA-CAAAATCACAAAGCAAAAAACACAATAGTTTTCAC
*
8385944 CTTTCACAAATATGATAT-CATCTCAATATGC
130 CTTTCACAAA-ATCAT-TGCATCTCAATATGC
* * * * * *
8385975 ACAAAATACTATCTAGTTTAATGCTGAATTTCCTATAATGACTAGGCTTTCAATTACTACACTAT
1 ACAAAACACTATCTAGTTCAATACTAAATTTCCTACAATGATTAGGCTTTCAATTACTACACTAT
** * * * * * *
8386040 CTGTTTTATCAACAATCACAATACACAACCAAAATCATAAAACAAAATACACAATAGTTTTAACC
66 CTACTTCATCAACAATCACAATACACAAACAAAATCACAAAGCAAAAAACACAATAGTTTTCACC
8386105 TTTCACAAA
131 TTTCACAAA
8386114 TGTGATCTCA
Statistics
Matches: 349, Mismatches: 71, Indels: 43
0.75 0.15 0.09
Matches are distributed among these distances:
144 14 0.04
145 74 0.21
146 4 0.01
147 15 0.04
148 6 0.02
149 1 0.00
153 1 0.00
155 1 0.00
156 8 0.02
157 15 0.04
158 130 0.37
159 66 0.19
160 14 0.04
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.31
Consensus pattern (159 bp):
ACAAAACACTATCTAGTTCAATACTAAATTTCCTACAATGATTAGGCTTTCAATTACTACACTAT
CTACTTCATCAACAATCACAATACACAAACAAAATCACAAAGCAAAAAACACAATAGTTTTCACC
TTTCACAAAATCATTGCATCTCAATATGC
Found at i:8386051 original size:145 final size:144
Alignment explanation
Indices: 8385762--8386041 Score: 330
Period size: 145 Copynumber: 1.9 Consensus size: 144
8385752 CATAATACAC
* * * * * *
8385762 AACCAGAATCACAAAGTAAAATATGCAATAGTTTTCACCTTTCATAAAATCATTGCATCTCAATT
1 AACCAAAATCACAAAGTAAAATACGCAAAAATGTTCACCTTTCACAAAATCATTGCATCTCAATT
* * ** *
8385827 CACACAAAACACCGTATAGTTCAATACTAAATTTCCAATAGTGTTTAGGCTTTTAATTACTACAC
66 CACACAAAACACCATATAGTTCAATACTAAATTTCCAATAATGACTAGGCTTTCAATTACTACAC
8385892 TATCTACTTCATCA
131 TATCTACTTCATCA
* *
8385906 AACCAAAATCACAAAGTAAAATACGTAAAAATGTTCACCTTTCACAAATATGATAT-CATCTCAA
1 AACCAAAATCACAAAGTAAAATACGCAAAAATGTTCACCTTTCACAAA-ATCAT-TGCATCTCAA
* * * * * * * *
8385970 TAT-GCACAAAATACTATCTAGTTTAATGCTGAATTTCCTATAATGACTAGGCTTTCAATTACTA
64 T-TCACACAAAACACCATATAGTTCAATACTAAATTTCCAATAATGACTAGGCTTTCAATTACTA
8386034 CACTATCT
128 CACTATCT
8386042 GTTTTATCAA
Statistics
Matches: 112, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
144 41 0.37
145 69 0.62
146 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (144 bp):
AACCAAAATCACAAAGTAAAATACGCAAAAATGTTCACCTTTCACAAAATCATTGCATCTCAATT
CACACAAAACACCATATAGTTCAATACTAAATTTCCAATAATGACTAGGCTTTCAATTACTACAC
TATCTACTTCATCA
Found at i:8390126 original size:39 final size:40
Alignment explanation
Indices: 8390083--8390168 Score: 97
Period size: 39 Copynumber: 2.2 Consensus size: 40
8390073 GACTCGTATA
*
8390083 GTGGATCAAGTT-T-TACCGATGCTAAACATAACTTATATC
1 GTGGATCAA-TTCTATACCGATGCTAAACATAACCTATATC
* * *
8390122 GTGGATC-ATTCTATATCGATGCTGAAGATAACCTATATC
1 GTGGATCAATTCTATACCGATGCTAAACATAACCTATATC
*
8390161 ATGGATCA
1 GTGGATCA
8390169 TGATGTATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
37 2 0.05
38 2 0.05
39 35 0.90
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (40 bp):
GTGGATCAATTCTATACCGATGCTAAACATAACCTATATC
Found at i:8394291 original size:13 final size:13
Alignment explanation
Indices: 8394273--8394297 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8394263 TAAGTACACA
8394273 TGTTTAAAGTTAT
1 TGTTTAAAGTTAT
8394286 TGTTTAAAGTTA
1 TGTTTAAAGTTA
8394298 GATATTGAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (13 bp):
TGTTTAAAGTTAT
Found at i:8395947 original size:26 final size:25
Alignment explanation
Indices: 8395916--8395983 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 25
8395906 TATAAAATAT
*
8395916 AATATATTTTTTAATTTTATCAAATC
1 AATATAATTTTT-ATTTTATCAAATC
8395942 AATATAAATTTTTATTTTATCAAATC
1 AATAT-AATTTTTATTTTATCAAATC
8395968 AATATAAATTTTTATT
1 AATAT-AATTTTTATT
8395984 AAAATTTTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 34 0.85
27 6 0.15
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (25 bp):
AATATAATTTTTATTTTATCAAATC
Found at i:8397543 original size:25 final size:24
Alignment explanation
Indices: 8397511--8397565 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 24
8397501 AAACAATAAT
*
8397511 AAAAATGATTATAATTATGATTGAA
1 AAAAATGATTATAATTATAATT-AA
8397536 AAAAATGATTATAATTATAATTAA
1 AAAAATGATTATAATTATAATTAA
8397560 AAAAAT
1 AAAAAT
8397566 TTAATAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 8 0.28
25 21 0.72
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (24 bp):
AAAAATGATTATAATTATAATTAA
Found at i:8398249 original size:16 final size:17
Alignment explanation
Indices: 8398217--8398251 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8398207 ATAAAATAAT
*
8398217 TTATTTATTTATTAAAA
1 TTATATATTTATTAAAA
8398234 TTATATATTT-TTAAAA
1 TTATATATTTATTAAAA
8398250 TT
1 TT
8398252 TTATGTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATATATTTATTAAAA
Found at i:8398820 original size:2 final size:2
Alignment explanation
Indices: 8398813--8398839 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8398803 TCTATAACTT
8398813 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8398840 GTAGGATGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8400359 original size:184 final size:183
Alignment explanation
Indices: 8400043--8400399 Score: 599
Period size: 184 Copynumber: 1.9 Consensus size: 183
8400033 CTTTTTTTTG
8400043 TTATGTTGTTCTTCATAATTAGGCATTTTGTGGTTTAGGATTTTTTATTATTCTTTATTACTCGA
1 TTATGTTGTTCTTCATAATTAGGCATTTTGTGGTTTAGGATTTTTTATTATTCTTTATTACTCGA
* *
8400108 ATTTAATTTTCTTGAAGAGTAAGATGGTTTGTCCTGAAAGTATAGAGAAGGGTTAAGTTAGGAAA
66 ATTTAATTTTCTTGAAGAGTAAGATGGTTTGTCCTGAAAGTATAAAGAAGGGTTAAGTTAAGAAA
8400173 TTTATATGTGATAGTATTAAAATTTAATATTTCTACTTATATTTACATTTATTT
131 TTTATATGTGATAGTATT-AAATTTAATATTTCTACTTATATTTACATTTATTT
* * * * * *
8400227 TTATGTTGTTCTTCATAGTTAGGTATTTTGTGGTTTA-GAGTTTTTTGTTGTTTTTTATTACTTG
1 TTATGTTGTTCTTCATAATTAGGCATTTTGTGGTTTAGGA-TTTTTTATTATTCTTTATTACTCG
*
8400291 AATTTAATTTTCTTGGAGAGTAAGATGGTTTGTCCTGAAAGTATAAAGAAGGGTTAAGTTAAGAA
65 AATTTAATTTTCTTGAAGAGTAAGATGGTTTGTCCTGAAAGTATAAAGAAGGGTTAAGTTAAGAA
*
8400356 ATTTATATGTGATAGTATTAAATTTAATATTTCTACTTGTATTT
130 ATTTATATGTGATAGTATTAAATTTAATATTTCTACTTATATTT
8400400 TCCATTTAAT
Statistics
Matches: 162, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
183 26 0.16
184 136 0.84
ACGTcount: A:0.28, C:0.06, G:0.18, T:0.48
Consensus pattern (183 bp):
TTATGTTGTTCTTCATAATTAGGCATTTTGTGGTTTAGGATTTTTTATTATTCTTTATTACTCGA
ATTTAATTTTCTTGAAGAGTAAGATGGTTTGTCCTGAAAGTATAAAGAAGGGTTAAGTTAAGAAA
TTTATATGTGATAGTATTAAATTTAATATTTCTACTTATATTTACATTTATTT
Found at i:8404797 original size:19 final size:17
Alignment explanation
Indices: 8404760--8404799 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
8404750 AATCAAAATC
8404760 AAAATAAATAAAATCAA
1 AAAATAAATAAAATCAA
*
8404777 AAAATAAAATGAAAATGAA
1 AAAAT-AAAT-AAAATCAA
8404796 AAAA
1 AAAA
8404800 AGAAAACCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 4 0.20
19 11 0.55
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (17 bp):
AAAATAAATAAAATCAA
Found at i:8405636 original size:15 final size:16
Alignment explanation
Indices: 8405616--8405649 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
8405606 ACCGGCCAAG
8405616 AAAAAATAAA-ATGAAA
1 AAAAAATAAAGAT-AAA
8405632 AAAAAATAAAGATAAA
1 AAAAAATAAAGATAAA
8405648 AA
1 AA
8405650 TAATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAAAATAAAGATAAA
Found at i:8405654 original size:15 final size:14
Alignment explanation
Indices: 8405613--8405655 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
8405603 ATCACCGGCC
8405613 AAGAAAAAATAA-A
1 AAGAAAAAATAATA
* *
8405626 ATGAAAAAAAAATA
1 AAGAAAAAATAATA
8405640 AAGATAAAAATAATA
1 AAGA-AAAAATAATA
8405655 A
1 A
8405656 TAATAATAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 10 0.42
14 4 0.17
15 10 0.42
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (14 bp):
AAGAAAAAATAATA
Found at i:8405689 original size:38 final size:38
Alignment explanation
Indices: 8405643--8405722 Score: 101
Period size: 38 Copynumber: 2.1 Consensus size: 38
8405633 AAAAATAAAG
* *
8405643 ATAA-AAATAATAATAATAATAATATAA-AACCATAGTA
1 ATAACAAATAATAATAATAATAA-AGAATAACAATAGTA
* *
8405680 ATAACAAATACTAATATTAATAAAGAATAACAATAGTA
1 ATAACAAATAATAATAATAATAAAGAATAACAATAGTA
8405718 ATAAC
1 ATAAC
8405723 GTAAATCGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 7 0.19
38 30 0.81
ACGTcount: A:0.62, C:0.07, G:0.04, T:0.26
Consensus pattern (38 bp):
ATAACAAATAATAATAATAATAAAGAATAACAATAGTA
Found at i:8406361 original size:120 final size:119
Alignment explanation
Indices: 8406065--8406361 Score: 305
Period size: 119 Copynumber: 2.5 Consensus size: 119
8406055 TGTGAGTTCG
* * ** * *
8406065 AAAAATGATATGCACTAAGCCAAGATCAAATGATCGAGATAAAATCATGAGTAAAAAAGATAAAT
1 AAAAATGATCTGAACTAAGCTGAGATCAAATGATCGAGATGAAATCATGAGTAAAAAAGATAAAA
** * * ** ** *
8406130 TGACCAGAACTAAGTCAAGTTAAAAGATGGTTGATTGGGACTTAACTGTGAGTC
66 CAACCAGAACCAAGTCAAGTTAAAAGATGGTTAACCGGGACAGAACTGCGAGTC
* * * * * * *
8406184 AAAAATGATTTGGACTAAGCTGAGATCAAATGATTGGGATGAAACCGTAAGTCAAAAAAGATAAA
1 AAAAATGATCTGAACTAAGCTGAGATCAAATGATCGAGATGAAATCATGAGT-AAAAAAGATAAA
8406249 ACAACCA-AGACCAAGTCAAGTT-AAAGATGGTTAACCGGGACAGAA-TCGCGAGTC
65 ACAACCAGA-ACCAAGTCAAGTTAAAAGATGGTTAACCGGGACAGAACT-GCGAGTC
* *
8406303 AAGAAATGATCTGAACTGAATC-GAGATCGAATGATCGAGATGAAATCATGAGTAAAAAA
1 AA-AAATGATCTGAACT-AAGCTGAGATCAAATGATCGAGATGAAATCATGAGTAAAAAA
8406362 TATATAGCAA
Statistics
Matches: 144, Mismatches: 29, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
118 1 0.01
119 75 0.52
120 65 0.45
121 3 0.02
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.21
Consensus pattern (119 bp):
AAAAATGATCTGAACTAAGCTGAGATCAAATGATCGAGATGAAATCATGAGTAAAAAAGATAAAA
CAACCAGAACCAAGTCAAGTTAAAAGATGGTTAACCGGGACAGAACTGCGAGTC
Found at i:8407627 original size:7 final size:6
Alignment explanation
Indices: 8407610--8407654 Score: 54
Period size: 6 Copynumber: 6.8 Consensus size: 6
8407600 CAGTCTAAGT
8407610 TTTTTC TTTTTC TATTTTTC TTTTTC TTTTTTC TTTTCTC TTTTT
1 TTTTTC TTTTTC --TTTTTC TTTTTC -TTTTTC TTTT-TC TTTTT
8407655 TTATTTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
6 17 0.49
7 12 0.34
8 6 0.17
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:8407627 original size:13 final size:14
Alignment explanation
Indices: 8407610--8407662 Score: 72
Period size: 14 Copynumber: 3.8 Consensus size: 14
8407600 CAGTCTAAGT
8407610 TTTTTCTTTTTCTA
1 TTTTTCTTTTTCTA
8407624 TTTTTCTTTTTCT-
1 TTTTTCTTTTTCTA
*
8407637 TTTTTCTTTTCTCTT
1 TTTTTCTTTT-TCTA
*
8407652 TTTTTATTTTT
1 TTTTTCTTTTT
8407663 TTGTAATTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
13 10 0.28
14 17 0.47
15 9 0.25
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTCTTTTTCTA
Found at i:8407627 original size:14 final size:13
Alignment explanation
Indices: 8407609--8407655 Score: 76
Period size: 14 Copynumber: 3.5 Consensus size: 13
8407599 TCAGTCTAAG
8407609 TTTTTTCTTTTTC
1 TTTTTTCTTTTTC
8407622 TATTTTTCTTTTTC
1 T-TTTTTCTTTTTC
8407636 TTTTTTCTTTTCTC
1 TTTTTTCTTTT-TC
8407650 TTTTTT
1 TTTTTT
8407656 TATTTTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
13 11 0.34
14 21 0.66
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTTCTTTTTC
Found at i:8407633 original size:20 final size:20
Alignment explanation
Indices: 8407610--8407654 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
8407600 CAGTCTAAGT
*
8407610 TTTTTC-TTTTTCTATTTTTC
1 TTTTTCTTTTTTCT-TTTCTC
8407630 TTTTTCTTTTTTCTTTTCTC
1 TTTTTCTTTTTTCTTTTCTC
8407650 TTTTT
1 TTTTT
8407655 TTATTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTCTTTTTTCTTTTCTC
Found at i:8407686 original size:24 final size:25
Alignment explanation
Indices: 8407658--8407723 Score: 64
Period size: 24 Copynumber: 2.7 Consensus size: 25
8407648 TCTTTTTTTA
*
8407658 TTTTTTTGTAATTTTTTA-TA-ATT
1 TTTTTTTGTAATTTTTTATTACAAT
* * *
8407681 TCTTTTTTTTTACTTTTTATTACAAT
1 T-TTTTTTGTAATTTTTTATTACAAT
*
8407707 TTTTTTGGTAATTTTTT
1 TTTTTTTGTAATTTTTT
8407724 CTTTTTTTTG
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
23 1 0.03
24 14 0.44
25 14 0.44
26 3 0.09
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.73
Consensus pattern (25 bp):
TTTTTTTGTAATTTTTTATTACAAT
Found at i:8408052 original size:52 final size:52
Alignment explanation
Indices: 8407974--8408076 Score: 131
Period size: 52 Copynumber: 2.0 Consensus size: 52
8407964 ATTTCCCTAT
*
8407974 GTAGAGCACACTGACTTTTTTCCCTATTAATTTCTCTTTCATTTTTC-TTTTG
1 GTAGAGCACACTGACTTTTTTCCCTATCAATTT-TCTTTCATTTTTCATTTTG
* *
8408026 GTAGAGCACATTAGCAC-TTTTT-CCTATCAATTTTTTTTCATTTTTCATTTT
1 GTAGAGCACACT-G-ACTTTTTTCCCTATCAATTTTCTTTCATTTTTCATTTT
8408077 CATTTTTTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
51 12 0.27
52 25 0.56
53 6 0.13
54 2 0.04
ACGTcount: A:0.19, C:0.19, G:0.09, T:0.52
Consensus pattern (52 bp):
GTAGAGCACACTGACTTTTTTCCCTATCAATTTTCTTTCATTTTTCATTTTG
Found at i:8408076 original size:13 final size:14
Alignment explanation
Indices: 8408060--8408089 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8408050 TATCAATTTT
8408060 TTTTCA-TTTTTCA
1 TTTTCATTTTTTCA
8408073 TTTTCATTTTTTCA
1 TTTTCATTTTTTCA
8408087 TTT
1 TTT
8408090 ATCAAGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTCATTTTTTCA
Found at i:8412505 original size:19 final size:19
Alignment explanation
Indices: 8412454--8412528 Score: 72
Period size: 16 Copynumber: 4.2 Consensus size: 19
8412444 GATTTTTTAA
*
8412454 AAAAACTATTAAAATTAAAT
1 AAAAACT-TTAAAATAAAAT
* *
8412474 AAAAAATTGAAAATAAAAT
1 AAAAACTTTAAAATAAAAT
8412493 AAAAACTTT--AA-AAAAT
1 AAAAACTTTAAAATAAAAT
8412509 AAAAA---TAAAATAAAAT
1 AAAAACTTTAAAATAAAAT
8412525 AAAA
1 AAAA
8412529 TTAGAAATAA
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
13 1 0.02
15 2 0.04
16 19 0.40
17 2 0.04
19 17 0.36
20 6 0.13
ACGTcount: A:0.73, C:0.03, G:0.01, T:0.23
Consensus pattern (19 bp):
AAAAACTTTAAAATAAAAT
Found at i:8412528 original size:22 final size:23
Alignment explanation
Indices: 8412503--8412547 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
8412493 AAAAACTTTA
8412503 AAAAATAAAAATAAAAT-AAAAT
1 AAAAATAAAAATAAAATGAAAAT
* *
8412525 AAAATTAGAAATAAAATGAAAAT
1 AAAAATAAAAATAAAATGAAAAT
8412548 GGAAAAAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (23 bp):
AAAAATAAAAATAAAATGAAAAT
Found at i:8412548 original size:6 final size:5
Alignment explanation
Indices: 8412504--8412547 Score: 52
Period size: 5 Copynumber: 8.0 Consensus size: 5
8412494 AAAACTTTAA
8412504 AAAAT AAAAAT AAAAT AAAAT AAAATT AGAAAT AAAAT GAAAAT
1 AAAAT -AAAAT AAAAT AAAAT AAAA-T A-AAAT AAAAT -AAAAT
8412548 GGAAAAAGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 18 0.51
6 14 0.40
7 3 0.09
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:8412552 original size:17 final size:17
Alignment explanation
Indices: 8412504--8412547 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
8412494 AAAACTTTAA
*
8412504 AAAATAAAAATA-AAAT
1 AAAATAAAATTAGAAAT
8412520 AAAATAAAATTAGAAAT
1 AAAATAAAATTAGAAAT
8412537 AAAATGAAAAT
1 AAAAT-AAAAT
8412548 GGAAAAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 11 0.44
17 9 0.36
18 5 0.20
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (17 bp):
AAAATAAAATTAGAAAT
Found at i:8413407 original size:3 final size:3
Alignment explanation
Indices: 8413399--8413442 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
8413389 AAATAAAAAT
8413399 TAA TAA TAA TAA TAA TAA T-A TAA T-A TAA T-A TAA T-A TAA TTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
8413441 TA
1 TA
8413443 CAATTAGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
2 8 0.22
3 25 0.69
4 3 0.08
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:8413417 original size:15 final size:15
Alignment explanation
Indices: 8413399--8413442 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
8413389 AAATAAAAAT
8413399 TAATAATAATAATAA
1 TAATAATAATAATAA
8413414 TAAT-ATAAT-ATAA
1 TAATAATAATAATAA
8413427 T-ATAAT-ATAATTAA
1 TAATAATAATAA-TAA
8413441 TA
1 TA
8413443 CAATTAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 4 0.16
13 8 0.32
14 9 0.36
15 4 0.16
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATAATAATAATAA
Found at i:8413423 original size:5 final size:5
Alignment explanation
Indices: 8413401--8413442 Score: 59
Period size: 5 Copynumber: 8.2 Consensus size: 5
8413391 ATAAAAATTA
8413401 ATAAT AATAAT AATAAT ATAAT ATAAT ATAAT ATAAT -TAAT A
1 ATAAT -ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A
8413443 CAATTAGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.11
5 20 0.57
6 11 0.31
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:8421945 original size:19 final size:18
Alignment explanation
Indices: 8421902--8421959 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 18
8421892 AATAAATTTA
*
8421902 AAATTTATTTTAAAAAATT
1 AAATTTAATTT-AAAAATT
*
8421921 -ATTTTAATTTACAAAATT
1 AAATTTAATTTA-AAAATT
8421939 AAATTTAGATTTAAAAATT
1 AAATTTA-ATTTAAAAATT
8421958 AA
1 AA
8421960 CTATGCATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 1 0.03
18 14 0.42
19 13 0.39
20 5 0.15
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
AAATTTAATTTAAAAATT
Found at i:8423388 original size:28 final size:27
Alignment explanation
Indices: 8423356--8423411 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 27
8423346 CCCCCTTTTT
8423356 TTCTTCAT-TTTTTCCTTTTCCTCATCTC
1 TTCTTC-TCTTTTTCC-TTTCCTCATCTC
*
8423384 TTCTTCTCTTTTTCCTTTCCTCTTCTC
1 TTCTTCTCTTTTTCCTTTCCTCATCTC
8423411 T
1 T
8423412 CCATTTATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.04, C:0.34, G:0.00, T:0.62
Consensus pattern (27 bp):
TTCTTCTCTTTTTCCTTTCCTCATCTC
Found at i:8423976 original size:46 final size:46
Alignment explanation
Indices: 8423909--8424034 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 46
8423899 TTGAAAGCTC
* * *
8423909 GACAA-TTTTAAAAATAAATTTAAAAGCTCTTTTAAGCAAAAACTT
1 GACAACTTTTAAAAATAGATTTAAAAACTCATTTAAGCAAAAACTT
* * *
8423954 GACAACTTTTAAAAATAGATTTAAAAACTCCTTTATGCAAAAATTT
1 GACAACTTTTAAAAATAGATTTAAAAACTCATTTAAGCAAAAACTT
** * *
8424000 TTCAACTTTTGAAAATAGAATTAAAAACTCATTTA
1 GACAACTTTTAAAAATAGATTTAAAAACTCATTTA
8424035 GGTAAATGCT
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
45 5 0.07
46 65 0.93
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35
Consensus pattern (46 bp):
GACAACTTTTAAAAATAGATTTAAAAACTCATTTAAGCAAAAACTT
Found at i:8424055 original size:46 final size:44
Alignment explanation
Indices: 8424003--8424203 Score: 186
Period size: 46 Copynumber: 4.4 Consensus size: 44
8423993 AAAATTTTTC
8424003 AACTTTTGAAAATAGAATTAAAAACTCATTTAGGTAAATGCTTAAT
1 AACTTTTGAAAATA-AATTAAAAACTCATTTAGGTAAA-GCTTAAT
* * * *
8424049 ACCTTTTGAAAATAACTTTAAAAGCTCATTTAGGTAAAGACTCAAT
1 AACTTTTGAAAATAA-ATTAAAAACTCATTTAGGTAAAG-CTTAAT
* * * ** * *
8424095 AACTTTTGAAGACAAGTTTAAAGGCTCTTTTAGGTAAAGGTTGAAT
1 AACTTTTGAAAATAA-ATTAAAAACTCATTTAGGTAAAGCTT-AAT
* * * *
8424141 AATTTTTTAAAATAAATTTAAAAACTCATTTAGGTAAAGGCTCAAC
1 AACTTTTGAAAATAAA-TTAAAAACTCATTTAGGTAAA-GCTTAAT
*
8424187 AACTTTTAAAAATAAAT
1 AACTTTTGAAAATAAAT
8424204 CTCATTTTGG
Statistics
Matches: 125, Mismatches: 25, Indels: 11
0.78 0.16 0.07
Matches are distributed among these distances:
45 4 0.03
46 119 0.95
47 2 0.02
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.34
Consensus pattern (44 bp):
AACTTTTGAAAATAAATTAAAAACTCATTTAGGTAAAGCTTAAT
Found at i:8424099 original size:92 final size:91
Alignment explanation
Indices: 8423957--8424200 Score: 231
Period size: 92 Copynumber: 2.7 Consensus size: 91
8423947 AAAACTTGAC
* * * * * * * ***
8423957 AACTTTTAAAAATAGATTTAAAAACTCCTTTATGCAAAAATTTTTCAACTTTTGAAAATAGAATT
1 AACTTTTGAAAATAAATTTAAAAACTCATTTAGGTAAAGACTCAACAACTTTTGAAAATAG-ATT
8424022 AAAAACTCATTTAGGTAAATGCTT-AAT
65 AAAAACTCATTTAGGTAAA-GCTTGAAT
* * * * *
8424049 ACCTTTTGAAAATAACTTTAAAAGCTCATTTAGGTAAAGACTCAATAACTTTTGAAGACA-AGTT
1 AACTTTTGAAAATAAATTTAAAAACTCATTTAGGTAAAGACTCAACAACTTTTGAA-A-ATAGAT
** * *
8424113 TAAAGGCTCTTTTAGGTAAAGGTTGAAT
64 TAAAAACTCATTTAGGTAAAGCTTGAAT
* * * *
8424141 AATTTTTTAAAATAAATTTAAAAACTCATTTAGGTAAAGGCTCAACAACTTTTAAAAATA
1 AACTTTTGAAAATAAATTTAAAAACTCATTTAGGTAAAGACTCAACAACTTTTGAAAATA
8424201 AATCTCATTT
Statistics
Matches: 121, Mismatches: 27, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
90 1 0.01
91 5 0.04
92 111 0.92
93 3 0.02
94 1 0.01
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (91 bp):
AACTTTTGAAAATAAATTTAAAAACTCATTTAGGTAAAGACTCAACAACTTTTGAAAATAGATTA
AAAACTCATTTAGGTAAAGCTTGAAT
Found at i:8424544 original size:33 final size:33
Alignment explanation
Indices: 8424410--8424615 Score: 106
Period size: 31 Copynumber: 6.3 Consensus size: 33
8424400 AACTAAATCA
*
8424410 AGCTTAAATCTTATCGGAGT-C-AGCTAAACT-
1 AGCTTAAATCTTATCGGGGTGCTAGCTAAACTG
* * * * * *
8424440 ATGCTTAATTCTTATCTGGATACTAGCTAAAATA
1 A-GCTTAAATCTTATCGGGGTGCTAGCTAAACTG
**
8424474 AGCTTTAAATCTTATTC---GTGCTAGCTAAGTTG
1 AGC-TTAAATCTTA-TCGGGGTGCTAGCTAAACTG
* *
8424506 GGCTTAAATCTCATCGGGGTGCTAGCTAAACTG
1 AGCTTAAATCTTATCGGGGTGCTAGCTAAACTG
* ** * *
8424539 AGCTTAAAATTTTATCAAGGT-ATCAGCTAAAATTG
1 AGCTT-AAATCTTATCGGGGTGCT-AGCT-AAACTG
* * * * *
8424574 TGCTTAAAACTTAT--TGGTGCCAACTAAACTG
1 AGCTTAAATCTTATCGGGGTGCTAGCTAAACTG
8424605 AGCTTAAATCT
1 AGCTTAAATCT
8424616 CATTAGAGCC
Statistics
Matches: 131, Mismatches: 32, Indels: 25
0.70 0.17 0.13
Matches are distributed among these distances:
30 3 0.02
31 38 0.29
32 19 0.15
33 28 0.21
34 32 0.24
35 11 0.08
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (33 bp):
AGCTTAAATCTTATCGGGGTGCTAGCTAAACTG
Found at i:8424965 original size:35 final size:36
Alignment explanation
Indices: 8424926--8424999 Score: 100
Period size: 34 Copynumber: 2.1 Consensus size: 36
8424916 CTTCTTTGTC
*
8424926 TCTTTTGTTTTTTTCTTTT-TCTT-TTTCCCCATTTT
1 TCTTTTCTTTTTTTCTTTTCTCTTCTTTCCCC-TTTT
*
8424961 TC-TTTCTTTTTTTCTTTTCTTTTCTTTCCCCTTTT
1 TCTTTTCTTTTTTTCTTTTCTCTTCTTTCCCCTTTT
8424996 TCTT
1 TCTT
8425000 CAAACTCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
34 15 0.44
35 11 0.32
36 8 0.24
ACGTcount: A:0.01, C:0.23, G:0.01, T:0.74
Consensus pattern (36 bp):
TCTTTTCTTTTTTTCTTTTCTCTTCTTTCCCCTTTT
Found at i:8425811 original size:21 final size:21
Alignment explanation
Indices: 8425768--8425807 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8425758 GGTTTTTTTA
* *
8425768 ATTTTTTTTTTCATTTTCAAC
1 ATTTTTTTTATCAGTTTCAAC
8425789 ATTTTTTTTAT-AGTTTCAA
1 ATTTTTTTTATCAGTTTCAA
8425808 ACATACAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.65
Consensus pattern (21 bp):
ATTTTTTTTATCAGTTTCAAC
Found at i:8426924 original size:24 final size:26
Alignment explanation
Indices: 8426888--8426935 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
8426878 ATTCATAATT
*
8426888 TTTTTCTTTCTTTT-CATTTTTCCCC
1 TTTTTCTTCCTTTTCCATTTTTCCCC
8426913 TTTTT-TTCCTTTTCCATTTTTCC
1 TTTTTCTTCCTTTTCCATTTTTCC
8426936 ATTTTTCCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.69
Consensus pattern (26 bp):
TTTTTCTTCCTTTTCCATTTTTCCCC
Found at i:8426939 original size:33 final size:33
Alignment explanation
Indices: 8426898--8426973 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
8426888 TTTTTCTTTC
*
8426898 TTTT-CATTTTTCCCCTTTTTTTCCTT-TTCCA-T
1 TTTTCCATTTTT--CCTTTTCTTCCTTCTTCCATT
* *
8426930 TTTTCCATTTTTCCTTTTCTTCTTTCTTTCATT
1 TTTTCCATTTTTCCTTTTCTTCCTTCTTCCATT
8426963 TTTTCCATTTT
1 TTTTCCATTTT
8426974 CTCATTCTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
31 11 0.29
32 8 0.21
33 19 0.50
ACGTcount: A:0.07, C:0.25, G:0.00, T:0.68
Consensus pattern (33 bp):
TTTTCCATTTTTCCTTTTCTTCCTTCTTCCATT
Found at i:8426941 original size:25 final size:25
Alignment explanation
Indices: 8426887--8426941 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
8426877 CATTCATAAT
* *
8426887 TTTTTTCTTTCTTTTCATTTTTCCC
1 TTTTTTCTTCCTTTTCATTTTTCCA
*
8426912 CTTTTT-TTCCTTTTCCATTTTTCCA
1 TTTTTTCTTCCTTTT-CATTTTTCCA
8426937 TTTTT
1 TTTTT
8426942 CCTTTTCTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTTTTCTTCCTTTTCATTTTTCCA
Found at i:8427498 original size:20 final size:19
Alignment explanation
Indices: 8427473--8427553 Score: 83
Period size: 19 Copynumber: 4.1 Consensus size: 19
8427463 AATCAAATAT
8427473 TTTCTTTCTCTTTTTTTTTC
1 TTTCTTT-TCTTTTTTTTTC
* *
8427493 TTTCTTTTCATTTATTTTC
1 TTTCTTTTCTTTTTTTTTC
8427512 ATTTCTTTCTCTTTTTTTTT-
1 -TTTCTTT-TCTTTTTTTTTC
*
8427532 TTTGTTTTCTTTCTTTCTTTC
1 TTTCTTTTCTTT-TTT-TTTC
8427553 T
1 T
8427554 ATTTTTTTTC
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
18 5 0.10
19 19 0.37
20 17 0.33
21 10 0.20
ACGTcount: A:0.04, C:0.17, G:0.01, T:0.78
Consensus pattern (19 bp):
TTTCTTTTCTTTTTTTTTC
Found at i:8427558 original size:24 final size:23
Alignment explanation
Indices: 8427473--8427565 Score: 82
Period size: 24 Copynumber: 3.9 Consensus size: 23
8427463 AATCAAATAT
*
8427473 TTTCTTTCTCTTTTTTTTTCTTTC
1 TTTCTTTCT-ATTTTTTTTCTTTC
* *
8427497 TTTTCATT-TATTTTCATTTCTTTC
1 -TTTCTTTCTATTTT-TTTTCTTTC
* *
8427521 TCTT-TTTTTTTTTTGTTTTCTTTC
1 T-TTCTTTCTATTTT-TTTTCTTTC
8427545 TTTCTTTCTATTTTTTTTCTT
1 TTTCTTTCTATTTTTTTTCTT
8427566 GCATGCCCCC
Statistics
Matches: 55, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
23 16 0.29
24 33 0.60
25 6 0.11
ACGTcount: A:0.04, C:0.16, G:0.01, T:0.78
Consensus pattern (23 bp):
TTTCTTTCTATTTTTTTTCTTTC
Found at i:8427558 original size:28 final size:28
Alignment explanation
Indices: 8427489--8427562 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
8427479 TCTCTTTTTT
**
8427489 TTTCTTTCTTTTCATTTATTTTCATTTC
1 TTTCTTTCTTTTTTTTTATTTTCATTTC
* *
8427517 TTTCTCTTTTTTTTTTTTGTTTTC-TTTC
1 TTTCT-TTCTTTTTTTTTATTTTCATTTC
8427545 TTTCTTTCTATTTTTTTT
1 TTTCTTTCT-TTTTTTTT
8427563 CTTGCATGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
27 3 0.08
28 22 0.56
29 14 0.36
ACGTcount: A:0.05, C:0.15, G:0.01, T:0.78
Consensus pattern (28 bp):
TTTCTTTCTTTTTTTTTATTTTCATTTC
Found at i:8429311 original size:19 final size:20
Alignment explanation
Indices: 8429289--8429326 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8429279 TTTTCTCTTT
8429289 TTCTTCTTT-TTTTTTCTCC
1 TTCTTCTTTATTTTTTCTCC
*
8429308 TTCTTTTTTATTTTTTCTC
1 TTCTTCTTTATTTTTTCTC
8429327 TTTTCACACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (20 bp):
TTCTTCTTTATTTTTTCTCC
Found at i:8429328 original size:16 final size:16
Alignment explanation
Indices: 8429286--8429330 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
8429276 CCTTTTTCTC
8429286 TTTTTCTTCTTTTTTT
1 TTTTTCTTCTTTTTTT
* *
8429302 TTCTCCTTCTTTTTTAT
1 TTTTTCTTCTTTTTT-T
8429319 TTTTTC-TCTTTT
1 TTTTTCTTCTTTT
8429331 CACACCAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTCTTCTTTTTTT
Found at i:8429521 original size:31 final size:30
Alignment explanation
Indices: 8429463--8429521 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
8429453 TACCGTCATC
* * *
8429463 TTTTTTTTTGTTTTTTCTCATTCTTTCTCT
1 TTTTTTTTTCTTTTTTCTCACTATTTCTCT
*
8429493 TTTTTTTTTCCTTTTTTCTTACTATTTCT
1 TTTTTTTTT-CTTTTTTCTCACTATTTCT
8429522 TCTCTTTTGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 9 0.38
31 15 0.62
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (30 bp):
TTTTTTTTTCTTTTTTCTCACTATTTCTCT
Found at i:8431179 original size:151 final size:150
Alignment explanation
Indices: 8430934--8431239 Score: 386
Period size: 151 Copynumber: 2.0 Consensus size: 150
8430924 TATAAGGGGA
* * * * *
8430934 TTATTGAAGGCGTATGTAGCCAAAAATGCCTTGAATAATTCCTAAACCTTTAACCTTAAATCCAA
1 TTATTGAAAGCGTATCTAGCCAAAAACGCCTTGAATAATTCATAAACCTTAAACCTTAAATCCAA
* * *
8430999 AACTCATAAAAATTTAAGGAGATTATTCAAGGCATTTTTACCCAAAAAAACGTCTTAAATAAT-T
66 AACTCATAAAAATTTAAAGAGATTATTCAAAGCATTTTT-CCCAAAAAAACGCCTTAAATAATCT
*
8431063 CATTACAAAAAATTGAAT-AGAG
130 C-TTACAAAAAATTAAATGAG-G
*
8431085 TTATTGAAAGCGTTTCTAGCCAAAAACGCCTTGAATAATTCATAAATCC-TAAACCTTAAA-CTC
1 TTATTGAAAGCGTATCTAGCCAAAAACGCCTTGAATAATTCATAAA-CCTTAAACCTTAAATC-C
* * * * * * *
8431148 TAAACTCATAAAAATTTAAAGAGATTATTCAAAGCGTTTTTGCCTAGAATACGCCTTCAATAATC
64 AAAACTCATAAAAATTTAAAGAGATTATTCAAAGCATTTTTCCCAAAAAAACGCCTTAAATAATC
8431213 TCTTACAAAAAATTAAATGAGG
129 TCTTACAAAAAATTAAATGAGG
8431235 TTATT
1 TTATT
8431240 CAAAATGTTT
Statistics
Matches: 134, Mismatches: 17, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
150 39 0.29
151 93 0.69
152 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.31
Consensus pattern (150 bp):
TTATTGAAAGCGTATCTAGCCAAAAACGCCTTGAATAATTCATAAACCTTAAACCTTAAATCCAA
AACTCATAAAAATTTAAAGAGATTATTCAAAGCATTTTTCCCAAAAAAACGCCTTAAATAATCTC
TTACAAAAAATTAAATGAGG
Found at i:8431369 original size:58 final size:60
Alignment explanation
Indices: 8431254--8431370 Score: 175
Period size: 58 Copynumber: 1.9 Consensus size: 60
8431244 ATGTTTCTGA
*
8431254 CAAAAAATACCTTGAATAATCTTTTTCAAATTTTTTTTGGGATTATTCAAGGCGTTTTTGCC
1 CAAAAAATACCTTGAATAATCTTTTT--AATTTTTTTTGAGATTATTCAAGGCGTTTTTGCC
* *
8431316 CAAAAAATGCCTTGAATAAT-TTTTT-ATTTTTTTTGAGATTATTCAAGGTGTTTTT
1 CAAAAAATACCTTGAATAATCTTTTTAATTTTTTTTGAGATTATTCAAGGCGTTTTT
8431371 AATCAAAAAC
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
58 28 0.54
61 5 0.10
62 19 0.37
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (60 bp):
CAAAAAATACCTTGAATAATCTTTTTAATTTTTTTTGAGATTATTCAAGGCGTTTTTGCC
Found at i:8431378 original size:58 final size:59
Alignment explanation
Indices: 8431254--8431393 Score: 167
Period size: 58 Copynumber: 2.4 Consensus size: 59
8431244 ATGTTTCTGA
* * **
8431254 CAAAAAATACCTTGAATAATCTTTTTCAAATTTTTTTTGGGATTATTCAAGGCGTTTTTGCC
1 CAAAAAATGCCTTGAATAAT-TTTTT--AATTTTTTTTGAGATTATTCAAGGCGTTTTTAAC
* *
8431316 CAAAAAATGCCTTGAATAATTTTTT-ATTTTTTTTGAGATTATTCAAGGTGTTTTTAAT
1 CAAAAAATGCCTTGAATAATTTTTTAATTTTTTTTGAGATTATTCAAGGCGTTTTTAAC
* *
8431374 C-AAAAACGCTTTGAATAATT
1 CAAAAAATGCCTTGAATAATT
8431394 CTCTAATAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
57 17 0.24
58 29 0.41
61 5 0.07
62 19 0.27
ACGTcount: A:0.32, C:0.11, G:0.12, T:0.44
Consensus pattern (59 bp):
CAAAAAATGCCTTGAATAATTTTTTAATTTTTTTTGAGATTATTCAAGGCGTTTTTAAC
Found at i:8438485 original size:27 final size:28
Alignment explanation
Indices: 8438455--8438519 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 28
8438445 TATTTTTATG
* *
8438455 TTAAATAATAA-TTTGGTTAATA-AATAA
1 TTAAA-AATAATTTTAGTTAAAATAATAA
8438482 TTAAAAA-AATTTTAGTTAAAATAATAA
1 TTAAAAATAATTTTAGTTAAAATAATAA
8438509 TATAAAAATAA
1 T-TAAAAATAA
8438520 AATTTATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 2 0.06
26 11 0.34
27 11 0.34
28 6 0.19
29 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (28 bp):
TTAAAAATAATTTTAGTTAAAATAATAA
Found at i:8438651 original size:21 final size:22
Alignment explanation
Indices: 8438614--8438654 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8438604 ATTCATAATT
*
8438614 TAATAATAATTTATTTATTATA
1 TAATAATAATATATTTATTATA
8438636 TAATAA-AATATATTTATTA
1 TAATAATAATATATTTATTA
8438655 CATTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TAATAATAATATATTTATTATA
Found at i:8440058 original size:101 final size:101
Alignment explanation
Indices: 8439844--8440107 Score: 262
Period size: 101 Copynumber: 2.6 Consensus size: 101
8439834 GATTAGATCT
* * * * * * ** * *
8439844 TGAATTGAAGAAATTGGGACTTCACTTTAAGGGTCTTTAATGACTTAACCTTGAATAGAAGAAAT
1 TGAATTGAAGAAATTTGAACTTCACTTCAAGAGTCTTTGATGATTTATTCTTGAATTGAAGAAGT
** * *** * *
8439909 T-TGGGCTTTGTTTCAAGGTCTTGATGACTTGATCA
66 TAAAGACTTAAATTCAAGGTCTTGATAACTTGACCA
* * *
8439944 TGAATTGGAGAAATTTGAACTTCGCTTCAAGAGTC-TTGATGATTTGTTCTTGAATTGAAGAAGT
1 TGAATTGAAGAAATTTGAACTTCACTTCAAGAGTCTTTGATGATTTATTCTTGAATTGAAGAAGT
* *
8440008 TAAAGACTTAAATTCAAGGGTTTTGATAACTTGACCT
66 TAAAGACTTAAATTCAA-GGTCTTGATAACTTGACCA
* * * *
8440045 TGAATTGAAGAAATTTTAACTTTACTTCAAGGGTCTTTGATGATTTATTCTTGGATTGAAGAA
1 TGAATTGAAGAAATTTGAACTTCACTTCAAGAGTCTTTGATGATTTATTCTTGAATTGAAGAA
8440108 ATTTCGACCC
Statistics
Matches: 131, Mismatches: 30, Indels: 4
0.79 0.18 0.02
Matches are distributed among these distances:
99 23 0.18
100 38 0.29
101 45 0.34
102 25 0.19
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (101 bp):
TGAATTGAAGAAATTTGAACTTCACTTCAAGAGTCTTTGATGATTTATTCTTGAATTGAAGAAGT
TAAAGACTTAAATTCAAGGTCTTGATAACTTGACCA
Found at i:8440074 original size:150 final size:152
Alignment explanation
Indices: 8439804--8440087 Score: 349
Period size: 150 Copynumber: 1.9 Consensus size: 152
8439794 TGAATTTAAT
* * ** * *
8439804 AAATTTGGACTTCACTTAAAGGGTCTTGATGATTAGATCTTGAATTGAAGAAATTGGGACTTCAC
1 AAATTTGAACTTCACTTAAAGAGTCTTGATGATTAGATCTTGAATTGAAGAAATTAAGACTTAAA
* * ** **
8439869 TTTAAGGGTCTTTAATGACTTAACCTTGAATAGAAGAAATTTGGGCTTTGTTTCAA-GGTC-TTG
66 TTCAAGGGTCTTTAATAACTTAACCTTGAATAGAAGAAATTTGAACTTTACTTCAAGGGTCTTTG
8439932 ATGACTTGATCATGAATTGGAG
131 ATGACTTGATCATGAATTGGAG
* * * * *
8439954 AAATTTGAACTTCGCTTCAAGAGTCTTGATGATTTGTTCTTGAATTGAAGAAGTTAAAGACTTAA
1 AAATTTGAACTTCACTTAAAGAGTCTTGATGATTAGATCTTGAATTGAAGAAATT-AAGACTTAA
* * * *
8440019 ATTCAAGGGT-TTTGATAACTTGACCTTGAATTGAAGAAATTTTAACTTTACTTCAAGGGTCTTT
65 ATTCAAGGGTCTTTAATAACTTAACCTTGAATAGAAGAAATTTGAACTTTACTTCAAGGGTCTTT
8440083 GATGA
130 GATGA
8440088 TTTATTCTTG
Statistics
Matches: 110, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
150 85 0.77
151 18 0.16
152 7 0.06
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (152 bp):
AAATTTGAACTTCACTTAAAGAGTCTTGATGATTAGATCTTGAATTGAAGAAATTAAGACTTAAA
TTCAAGGGTCTTTAATAACTTAACCTTGAATAGAAGAAATTTGAACTTTACTTCAAGGGTCTTTG
ATGACTTGATCATGAATTGGAG
Found at i:8440084 original size:51 final size:50
Alignment explanation
Indices: 8439792--8440111 Score: 268
Period size: 51 Copynumber: 6.4 Consensus size: 50
8439782 AAGACTTGGC
* * * *
8439792 CTTGAATTTAATAAATTTGGACTTCACTTAAAGGGTCTTGATGA-TTAGAT
1 CTTGAATTGAAGAAATTTGAACTTCACTTCAAGGGTCTTGATGACTT-GAT
* * * * * *
8439842 CTTGAATTGAAGAAATTGGGACTTCACTTTAAGGGTCTTTAATGACTTAAC
1 CTTGAATTGAAGAAATTTGAACTTCACTTCAAGGGTC-TTGATGACTTGAT
* ** ***
8439893 CTTGAATAGAAGAAATTTGGGCTTTGTTTCAA-GGTCTTGATGACTTGAT
1 CTTGAATTGAAGAAATTTGAACTTCACTTCAAGGGTCTTGATGACTTGAT
* * * * * *
8439942 CATGAATTGGAGAAATTTGAACTTCGCTTCAAGAGTCTTGATGATTTGTT
1 CTTGAATTGAAGAAATTTGAACTTCACTTCAAGGGTCTTGATGACTTGAT
* ** * * * * *
8439992 CTTGAATTGAAGAAGTTAAAGACTTAAATTCAAGGGTTTTGATAACTTGAC
1 CTTGAATTGAAGAAATTTGA-ACTTCACTTCAAGGGTCTTGATGACTTGAT
* * *
8440043 CTTGAATTGAAGAAATTTTAACTTTACTTCAAGGGTCTTTGATGA-TTTATT
1 CTTGAATTGAAGAAATTTGAACTTCACTTCAAGGGTC-TTGATGACTTGA-T
*
8440094 CTTGGATTGAAGAAATTT
1 CTTGAATTGAAGAAATTT
8440112 CGACCCAAAA
Statistics
Matches: 213, Mismatches: 51, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
49 35 0.16
50 83 0.39
51 93 0.44
52 2 0.01
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (50 bp):
CTTGAATTGAAGAAATTTGAACTTCACTTCAAGGGTCTTGATGACTTGAT
Found at i:8440212 original size:28 final size:28
Alignment explanation
Indices: 8440180--8440322 Score: 94
Period size: 28 Copynumber: 5.1 Consensus size: 28
8440170 GTTTTGGAAA
*
8440180 TCTTGGTATTTTGTCCCAATTTAGGGAT
1 TCTTGGTATTTGGTCCCAATTTAGGGAT
* ** *
8440208 TCTTGATATTTGGTCATAACTTT-GAGAT
1 TCTTGGTATTTGGTCCCAA-TTTAGGGAT
* * **
8440236 TCTTGGCATTTAGTGTCAATTTAGGGAT
1 TCTTGGTATTTGGTCCCAATTTAGGGAT
* *** *
8440264 TTTTTACATTTGATCCCAATTT-GAGGAT
1 TCTTGGTATTTGGTCCCAATTTAG-GGAT
* * *
8440292 TCTTAGAATTTGGTCCTAA-TTAGGGAT
1 TCTTGGTATTTGGTCCCAATTTAGGGAT
8440319 TCTT
1 TCTT
8440323 AGATCTTAGA
Statistics
Matches: 86, Mismatches: 25, Indels: 9
0.72 0.21 0.08
Matches are distributed among these distances:
27 14 0.16
28 69 0.80
29 3 0.03
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.45
Consensus pattern (28 bp):
TCTTGGTATTTGGTCCCAATTTAGGGAT
Found at i:8442188 original size:24 final size:24
Alignment explanation
Indices: 8442165--8442207 Score: 65
Period size: 21 Copynumber: 1.9 Consensus size: 24
8442155 ATTTTAGTAT
8442165 TATTTATTTTA---AAATTAAATG
1 TATTTATTTTATTTAAATTAAATG
8442186 TATTTATTTTATTTAAATTAAA
1 TATTTATTTTATTTAAATTAAA
8442208 ATTAAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.58
24 8 0.42
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (24 bp):
TATTTATTTTATTTAAATTAAATG
Found at i:8442283 original size:14 final size:14
Alignment explanation
Indices: 8442264--8442292 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8442254 AAAATTATGT
8442264 ATTTTCAAAAATAG
1 ATTTTCAAAAATAG
8442278 ATTTTCAAAAATAG
1 ATTTTCAAAAATAG
8442292 A
1 A
8442293 ATATAACTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (14 bp):
ATTTTCAAAAATAG
Found at i:8442969 original size:21 final size:22
Alignment explanation
Indices: 8442932--8442974 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
8442922 TATCTTCACT
*
8442932 ATTATTTTTAATCTCAT-TAAA
1 ATTAATTTTAATCTCATCTAAA
8442953 ATTAATTTT-ATCATCATCTAAA
1 ATTAATTTTAATC-TCATCTAAA
8442975 TGGAGTCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 3 0.16
21 12 0.63
22 4 0.21
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTAATTTTAATCTCATCTAAA
Done.