Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 54 of 190
Found at i:8930966 original size:9 final size:8
Alignment explanation
Indices: 8930942--8931051 Score: 106
Period size: 8 Copynumber: 13.9 Consensus size: 8
8930932 TTTTCTCTCC
8930942 TTTTCATT
1 TTTTCATT
8930950 TTTTCATT
1 TTTTCATT
8930958 TTTTCCATT
1 TTTT-CATT
8930967 TTTTCCATT
1 TTTT-CATT
8930976 TTTT-ATT
1 TTTTCATT
*
8930983 TTTTTATT
1 TTTTCATT
*
8930991 TTTTTATTT
1 TTTTCA-TT
8931000 TTTTCA-T
1 TTTTCATT
8931007 TTTTCA-T
1 TTTTCATT
8931014 TTTTCATTT
1 TTTTCA-TT
8931023 TTTTC-TCT
1 TTTTCAT-T
*
8931031 TTTTCATC
1 TTTTCATT
8931039 TTTT--TT
1 TTTTCATT
8931045 TTTTCAT
1 TTTTCAT
8931052 CTTCATTCAT
Statistics
Matches: 90, Mismatches: 3, Indels: 18
0.81 0.03 0.16
Matches are distributed among these distances:
6 5 0.06
7 22 0.24
8 32 0.36
9 31 0.34
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTCATT
Found at i:8931026 original size:17 final size:17
Alignment explanation
Indices: 8930942--8931045 Score: 64
Period size: 17 Copynumber: 6.2 Consensus size: 17
8930932 TTTTCTCTCC
8930942 TTTTCATTTTTTCA-TTT
1 TTTTCA-TTTTTCATTTT
*
8930959 TTTCCATTTTTTCCATTTT
1 TTTTCA-TTTTT-CATTTT
8930978 TTATT--TTTTT-A-TTT
1 TT-TTCATTTTTCATTTT
*
8930992 TTTT-ATTTTT--TTCAT
1 TTTTCATTTTTCATT-TT
8931007 TTTTCATTTTTCATTTT
1 TTTTCATTTTTCATTTT
8931024 TTTCTC-TTTTTCATCTTT
1 TTT-TCATTTTTCAT-TTT
8931042 TTTT
1 TTTT
8931046 TTTCATCTTC
Statistics
Matches: 72, Mismatches: 4, Indels: 22
0.73 0.04 0.22
Matches are distributed among these distances:
13 2 0.03
14 11 0.15
15 6 0.08
16 6 0.08
17 29 0.40
18 12 0.17
19 5 0.07
20 1 0.01
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTCATTTTTCATTTT
Found at i:8936111 original size:18 final size:19
Alignment explanation
Indices: 8936071--8936114 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
8936061 AAATTCACCA
**
8936071 AAAAATTCAATCGGCATTG
1 AAAAATTCAATCGAAATTG
*
8936090 AAAAATTC-ATCGAAATTT
1 AAAAATTCAATCGAAATTG
8936108 AAAAATT
1 AAAAATT
8936115 TTCCAGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.30
Consensus pattern (19 bp):
AAAAATTCAATCGAAATTG
Found at i:8937290 original size:3 final size:3
Alignment explanation
Indices: 8937274--8937306 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
8937264 AAAAAGGGAA
*
8937274 AAT AAT AA- AGT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8937307 CTATACCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 1 0.04
3 26 0.96
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:8948735 original size:37 final size:37
Alignment explanation
Indices: 8948675--8948771 Score: 176
Period size: 37 Copynumber: 2.6 Consensus size: 37
8948665 GCATTTTATT
* *
8948675 TCATTAATCCAAAAATATCTCAAACACATATTCTTTC
1 TCATCAATCTAAAAATATCTCAAACACATATTCTTTC
8948712 TCATCAATCTAAAAATATCTCAAACACATATTCTTTC
1 TCATCAATCTAAAAATATCTCAAACACATATTCTTTC
8948749 TCATCAATCTAAAAATATCTCAA
1 TCATCAATCTAAAAATATCTCAA
8948772 GCACCTTAAG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.34
Consensus pattern (37 bp):
TCATCAATCTAAAAATATCTCAAACACATATTCTTTC
Found at i:8952016 original size:7 final size:7
Alignment explanation
Indices: 8952004--8952194 Score: 88
Period size: 7 Copynumber: 29.4 Consensus size: 7
8951994 GATTGTTGGT
8952004 TTTAGGG
1 TTTAGGG
8952011 TTTAGGG
1 TTTAGGG
8952018 -TT--GG
1 TTTAGGG
*
8952022 TTTAAGG
1 TTTAGGG
8952029 TTTA--G
1 TTTAGGG
8952034 TTTAGGG
1 TTTAGGG
* *
8952041 TTT-TGT
1 TTTAGGG
**
8952047 TTTAGCA
1 TTTAGGG
8952054 TTTAGGG
1 TTTAGGG
8952061 -TTA-GG
1 TTTAGGG
8952066 TTTAGGG
1 TTTAGGG
*
8952073 TTTA-AG
1 TTTAGGG
*
8952079 CTTAGGG
1 TTTAGGG
8952086 TTTAGGG
1 TTTAGGG
*
8952093 TTT--GA
1 TTTAGGG
**
8952098 TTTTTGG
1 TTTAGGG
*
8952105 TTTTGGG
1 TTTAGGG
8952112 TTTAGGG
1 TTTAGGG
*
8952119 TTTAAGG
1 TTTAGGG
* *
8952126 TTTAAGA
1 TTTAGGG
8952133 TTT-GGG
1 TTTAGGG
* *
8952139 TTAAAGG
1 TTTAGGG
*
8952146 TTTAAGG
1 TTTAGGG
8952153 TTTA-GG
1 TTTAGGG
*
8952159 TTTAGAG
1 TTTAGGG
8952166 TTTA-GG
1 TTTAGGG
* *
8952172 TTAAAGG
1 TTTAGGG
*
8952179 TTT-TGG
1 TTTAGGG
8952185 TTTAGGG
1 TTTAGGG
8952192 TTT
1 TTT
8952195 GGATTTGGGA
Statistics
Matches: 141, Mismatches: 28, Indels: 30
0.71 0.14 0.15
Matches are distributed among these distances:
4 2 0.01
5 13 0.09
6 34 0.24
7 92 0.65
ACGTcount: A:0.18, C:0.01, G:0.33, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:8952022 original size:19 final size:19
Alignment explanation
Indices: 8951998--8952120 Score: 70
Period size: 19 Copynumber: 6.2 Consensus size: 19
8951988 GAATGGGATT
8951998 GTTGGTTTTAGGGTTTAGG
1 GTTGGTTTTAGGGTTTAGG
*
8952017 GTTGGTTTAAGGTTTAGTTTAGG
1 GTTGGTTTTAGG----GTTTAGG
* **
8952040 GTTTTGTTTTAGCATTTAGG
1 G-TTGGTTTTAGGGTTTAGG
*
8952060 GTTAGG-TTTAGGGTTTAAG
1 GTT-GGTTTTAGGGTTTAGG
* * **
8952079 CTTAGGGTTTAGGGTTTGATT
1 GTT-GGTTTTAGGGTTT-AGG
*
8952100 TTTGGTTTT-GGGTTTAGG
1 GTTGGTTTTAGGGTTTAGG
8952118 GTT
1 GTT
8952121 TAAGGTTTAA
Statistics
Matches: 79, Mismatches: 17, Indels: 17
0.70 0.15 0.15
Matches are distributed among these distances:
18 3 0.04
19 34 0.43
20 23 0.29
21 3 0.04
23 8 0.10
24 8 0.10
ACGTcount: A:0.14, C:0.02, G:0.35, T:0.50
Consensus pattern (19 bp):
GTTGGTTTTAGGGTTTAGG
Found at i:8952030 original size:18 final size:19
Alignment explanation
Indices: 8951998--8952033 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8951988 GAATGGGATT
*
8951998 GTTGGTTTTAGGGTTTAGG
1 GTTGGTTTTAAGGTTTAGG
8952017 GTTGG-TTTAAGGTTTAG
1 GTTGGTTTTAAGGTTTAG
8952034 TTTAGGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.14, C:0.00, G:0.39, T:0.47
Consensus pattern (19 bp):
GTTGGTTTTAAGGTTTAGG
Found at i:8952159 original size:13 final size:13
Alignment explanation
Indices: 8952061--8952194 Score: 67
Period size: 13 Copynumber: 10.2 Consensus size: 13
8952051 GCATTTAGGG
*
8952061 TTAGGTTTAGGGT
1 TTAGGTTTAAGGT
* * *
8952074 TTAAGCTTAGGGT
1 TTAGGTTTAAGGT
* *
8952087 TTAGGGTTTGA-TT
1 TTA-GGTTTAAGGT
* **
8952100 TTTGGTTTTGGGT
1 TTAGGTTTAAGGT
8952113 TTAGGGTTTAAGGT
1 TTA-GGTTTAAGGT
* *
8952127 TTAAGATTT-GGGT
1 TT-AGGTTTAAGGT
*
8952140 TAAAGGTTTAAGGT
1 T-TAGGTTTAAGGT
8952154 TTAGGTTT-AGAGT
1 TTAGGTTTAAG-GT
*
8952167 TTAGGTTAAAGGT
1 TTAGGTTTAAGGT
* *
8952180 TTTGGTTTAGGGT
1 TTAGGTTTAAGGT
8952193 TT
1 TT
8952195 GGATTTGGGA
Statistics
Matches: 89, Mismatches: 24, Indels: 16
0.69 0.19 0.12
Matches are distributed among these distances:
12 7 0.08
13 58 0.65
14 23 0.26
15 1 0.01
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (13 bp):
TTAGGTTTAAGGT
Found at i:8952169 original size:20 final size:20
Alignment explanation
Indices: 8952110--8952162 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
8952100 TTTGGTTTTG
8952110 GGTTTAGGGTTTAAGGTTTAA
1 GGTTTA-GGTTTAAGGTTTAA
* * *
8952131 GATTTGGGTTAAAGGTTTAA
1 GGTTTAGGTTTAAGGTTTAA
8952151 GGTTTAGGTTTA
1 GGTTTAGGTTTA
8952163 GAGTTTAGGT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.25, C:0.00, G:0.32, T:0.43
Consensus pattern (20 bp):
GGTTTAGGTTTAAGGTTTAA
Found at i:8952179 original size:26 final size:26
Alignment explanation
Indices: 8952143--8952194 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
8952133 TTTGGGTTAA
*
8952143 AGGTTTAAGGTTTAGGTTTAGAGTTT
1 AGGTTAAAGGTTTAGGTTTAGAGTTT
* *
8952169 AGGTTAAAGGTTTTGGTTTAGGGTTT
1 AGGTTAAAGGTTTAGGTTTAGAGTTT
8952195 GGATTTGGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (26 bp):
AGGTTAAAGGTTTAGGTTTAGAGTTT
Found at i:8958975 original size:51 final size:51
Alignment explanation
Indices: 8958853--8959007 Score: 192
Period size: 51 Copynumber: 3.1 Consensus size: 51
8958843 TAAGTGCTAT
* * * ** *
8958853 AAAAAAGGCTATGATAAAAGTAGGCTACGGAATTTTAAAAATCTCA-ATT-
1 AAAAAAGGCTCTAATAAAAATAGGCTAAAGAATTTTAAAAATCTCATTTTG
* *
8958902 -AGAAAGGCTCTTATAAAAATAGGCTAAAGAATTTTAAAAATCTCATTTTG
1 AAAAAAGGCTCTAATAAAAATAGGCTAAAGAATTTTAAAAATCTCATTTTG
*
8958952 AAAAAAGGCTCTAATAAAAATAGGCT-AAGAAACTTTAAAAATCTCATTTTG
1 AAAAAAGGCTCTAATAAAAATAGGCTAAAG-AATTTTAAAAATCTCATTTTG
8959003 AAAAA
1 AAAAA
8959008 GAAAAAGTTT
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
48 39 0.42
49 2 0.02
50 3 0.03
51 48 0.52
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.28
Consensus pattern (51 bp):
AAAAAAGGCTCTAATAAAAATAGGCTAAAGAATTTTAAAAATCTCATTTTG
Found at i:8959632 original size:8 final size:8
Alignment explanation
Indices: 8959570--8959637 Score: 68
Period size: 8 Copynumber: 8.4 Consensus size: 8
8959560 TTCAAACATA
*
8959570 ATTTTTTT
1 ATTTTTTC
*
8959578 ATTTTTTT
1 ATTTTTTC
8959586 ATTTTTTTC
1 A-TTTTTTC
8959595 A--TTTTC
1 ATTTTTTC
*
8959601 ATCTTTTC
1 ATTTTTTC
8959609 ATTGTTTTC
1 ATT-TTTTC
8959618 ATTTTTTC
1 ATTTTTTC
8959626 ATTTTTTTC
1 A-TTTTTTC
8959635 ATT
1 ATT
8959638 CACCATGTTA
Statistics
Matches: 53, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
6 6 0.11
8 24 0.45
9 23 0.43
ACGTcount: A:0.13, C:0.10, G:0.01, T:0.75
Consensus pattern (8 bp):
ATTTTTTC
Found at i:8959637 original size:17 final size:17
Alignment explanation
Indices: 8959570--8959637 Score: 72
Period size: 17 Copynumber: 4.2 Consensus size: 17
8959560 TTCAAACATA
*
8959570 ATTTTTTTATTTTTTT-
1 ATTTTTTCATTTTTTTC
8959586 ATTTTTTTCA---TTTTC
1 A-TTTTTTCATTTTTTTC
* *
8959601 ATCTTTTCATTGTTTTC
1 ATTTTTTCATTTTTTTC
8959618 ATTTTTTCATTTTTTTC
1 ATTTTTTCATTTTTTTC
8959635 ATT
1 ATT
8959638 CACCATGTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
14 11 0.26
15 1 0.02
16 1 0.02
17 30 0.70
ACGTcount: A:0.13, C:0.10, G:0.01, T:0.75
Consensus pattern (17 bp):
ATTTTTTCATTTTTTTC
Found at i:8967152 original size:15 final size:15
Alignment explanation
Indices: 8967128--8967162 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
8967118 GAAGTACGAA
*
8967128 AAAAATTGTAAAATC
1 AAAAACTGTAAAATC
8967143 AAAAACTGTAAAATC
1 AAAAACTGTAAAATC
8967158 AAAAA
1 AAAAA
8967163 TGGCAAGGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.66, C:0.09, G:0.06, T:0.20
Consensus pattern (15 bp):
AAAAACTGTAAAATC
Found at i:8967335 original size:78 final size:79
Alignment explanation
Indices: 8967239--8967386 Score: 244
Period size: 79 Copynumber: 1.9 Consensus size: 79
8967229 ACCAAAAAAG
* * * *
8967239 AAGAGGCAAGCGTTCGTGGGAACCAG-AAAAGTAGCAGGAAAACCAAAGGAAAAATAAGAACCAG
1 AAGAGGCAAGCATCCGTGGGAACCAGAAAAAGTAGCAAGAAAACCAAAGGAAAAATAAAAACCAG
8967303 TGGCAAAAAAATAA
66 TGGCAAAAAAATAA
*
8967317 AAGAGGCAGGCATCCGTGGGAACCAGAAAAAGTAGCAAGAAAACCAAAGGAAAAATAAAAACCAG
1 AAGAGGCAAGCATCCGTGGGAACCAGAAAAAGTAGCAAGAAAACCAAAGGAAAAATAAAAACCAG
8967382 TGGCA
66 TGGCA
8967387 GGAAAAAGAG
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
78 23 0.36
79 41 0.64
ACGTcount: A:0.51, C:0.16, G:0.26, T:0.08
Consensus pattern (79 bp):
AAGAGGCAAGCATCCGTGGGAACCAGAAAAAGTAGCAAGAAAACCAAAGGAAAAATAAAAACCAG
TGGCAAAAAAATAA
Found at i:8968660 original size:3 final size:3
Alignment explanation
Indices: 8968652--8968689 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8968642 GTTAAAGATA
8968652 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8968690 AGCTATTATC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8969546 original size:16 final size:14
Alignment explanation
Indices: 8969514--8969542 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8969504 AAACAAAAAT
8969514 TATCATGTAAATAA
1 TATCATGTAAATAA
8969528 TATCATGT-AATAA
1 TATCATGTAAATAA
8969541 TA
1 TA
8969543 ATATATCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (14 bp):
TATCATGTAAATAA
Found at i:8969550 original size:18 final size:18
Alignment explanation
Indices: 8969527--8969565 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
8969517 CATGTAAATA
* *
8969527 ATATCATGTAATAATAAT
1 ATATCATGCAAAAATAAT
8969545 ATATCATGCAAAAATAAT
1 ATATCATGCAAAAATAAT
8969563 ATA
1 ATA
8969566 ATATATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.33
Consensus pattern (18 bp):
ATATCATGCAAAAATAAT
Found at i:8969622 original size:19 final size:21
Alignment explanation
Indices: 8969568--8969625 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 21
8969558 ATAATATAAT
* * *
8969568 ATATAAATTATAATGAAATTA
1 ATATAAAATATCATGCAATTA
8969589 ATATAAAATATCATGCAATTA
1 ATATAAAATATCATGCAATTA
*
8969610 AT-TAATA-ATCATGCAA
1 ATATAAAATATCATGCAA
8969626 AACTATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.27
20 4 0.12
21 20 0.61
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.34
Consensus pattern (21 bp):
ATATAAAATATCATGCAATTA
Found at i:8971399 original size:17 final size:17
Alignment explanation
Indices: 8971366--8971464 Score: 73
Period size: 17 Copynumber: 5.9 Consensus size: 17
8971356 TAAAAATGGT
*
8971366 AGATTTGTAAG-ATTTC
1 AGATTTGCAAGAATTTC
*
8971382 ATATTTGCAAGAATTTC
1 AGATTTGCAAGAATTTC
* *
8971399 AGATTTGTAA-AACTTC
1 AGATTTGCAAGAATTTC
* *
8971415 AGGTTTGCAAGAATTTA
1 AGATTTGCAAGAATTTC
8971432 AG-TTT-CTTAAGAATTTC
1 AGATTTGC--AAGAATTTC
*
8971449 A-AGTTCGCAAGAATTT
1 AGA-TTTGCAAGAATTT
8971465 TAGGTTCACA
Statistics
Matches: 65, Mismatches: 11, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
15 1 0.02
16 25 0.38
17 36 0.55
18 2 0.03
19 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (17 bp):
AGATTTGCAAGAATTTC
Found at i:8971406 original size:33 final size:32
Alignment explanation
Indices: 8971366--8971464 Score: 92
Period size: 33 Copynumber: 3.0 Consensus size: 32
8971356 TAAAAATGGT
*
8971366 AGATTTGTAAGATTTCATATTTGCAAGAATTTC
1 AGATTTGTAAGATTTCA-ATTTGCAAGAATTTA
* * *
8971399 AGATTTGTAAAACTTCAGGTTTGCAAGAATTTA
1 AGATTTGTAAGATTTCA-ATTTGCAAGAATTTA
* *
8971432 AG-TTTCTTAAGAATTTCAAGTTCGCAAGAATTT
1 AGATTT-GTAAG-ATTTCAA-TTTGCAAGAATTT
8971465 TAGGTTCACA
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
32 3 0.06
33 33 0.62
34 17 0.32
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (32 bp):
AGATTTGTAAGATTTCAATTTGCAAGAATTTA
Found at i:8971471 original size:17 final size:17
Alignment explanation
Indices: 8971415--8971471 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
8971405 GTAAAACTTC
*
8971415 AGGTTTGCAAGAATTTA
1 AGGTTCGCAAGAATTTA
* **
8971432 AGTTTCTTAAGAATTTCA
1 AGGTTCGCAAGAATTT-A
*
8971450 A-GTTCGCAAGAATTTT
1 AGGTTCGCAAGAATTTA
8971466 AGGTTC
1 AGGTTC
8971472 ACAAAAGTTT
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
16 1 0.03
17 27 0.90
18 2 0.07
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (17 bp):
AGGTTCGCAAGAATTTA
Found at i:8971489 original size:51 final size:51
Alignment explanation
Indices: 8971434--8971538 Score: 174
Period size: 51 Copynumber: 2.1 Consensus size: 51
8971424 AGAATTTAAG
* *
8971434 TTTCTTAAGAATTTCAAGTTCGCAAGAATTTTAGGTTCACAAAAGTTTCAA
1 TTTCTTAAGAATTTCAAATTCGCAAGAATTTAAGGTTCACAAAAGTTTCAA
* *
8971485 TTTCTTAAGAATTTCAAATTCGTAAGAATTTAAGGTTCACACAAGTTTCAA
1 TTTCTTAAGAATTTCAAATTCGCAAGAATTTAAGGTTCACAAAAGTTTCAA
8971536 TTT
1 TTT
8971539 TGCAAGAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.39
Consensus pattern (51 bp):
TTTCTTAAGAATTTCAAATTCGCAAGAATTTAAGGTTCACAAAAGTTTCAA
Found at i:8971501 original size:17 final size:17
Alignment explanation
Indices: 8971423--8971515 Score: 73
Period size: 17 Copynumber: 5.5 Consensus size: 17
8971413 TCAGGTTTGC
*
8971423 AAGAATTT-AAGTTTCTT
1 AAGAATTTCAAG-TTCGT
*
8971440 AAGAATTTCAAGTTCGC
1 AAGAATTTCAAGTTCGT
* * **
8971457 AAGAATTTTAGGTTCAC
1 AAGAATTTCAAGTTCGT
* *
8971474 AA-AAGTTTCAATTTCTT
1 AAGAA-TTTCAAGTTCGT
*
8971491 AAGAATTTCAAATTCGT
1 AAGAATTTCAAGTTCGT
8971508 AAGAATTT
1 AAGAATTT
8971516 AAGGTTCACA
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
16 2 0.03
17 54 0.89
18 5 0.08
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.39
Consensus pattern (17 bp):
AAGAATTTCAAGTTCGT
Found at i:8971857 original size:23 final size:22
Alignment explanation
Indices: 8971830--8971910 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 22
8971820 TTCTCATTTG
* *
8971830 AAAATTTTCAAGGTTTCACATCC
1 AAAATTTTAAAGATTT-ACATCC
*
8971853 AAAATTTTAAAGATTTACATTCAA
1 AAAATTTTAAAGATTTACA-TC-C
* * *
8971877 AAAATTGTAAAGATTCACATTC
1 AAAATTTTAAAGATTTACATCC
* *
8971899 AAAGTTTCAAAG
1 AAAATTTTAAAG
8971911 GTTTTTTTTC
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
22 12 0.26
23 17 0.37
24 17 0.37
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (22 bp):
AAAATTTTAAAGATTTACATCC
Found at i:8971887 original size:24 final size:24
Alignment explanation
Indices: 8971853--8971901 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
8971843 TTTCACATCC
* *
8971853 AAAATTTTAAAGATTTACATTCAA
1 AAAATTGTAAAGATTCACATTCAA
8971877 AAAATTGTAAAGATTCACATTCAA
1 AAAATTGTAAAGATTCACATTCAA
8971901 A
1 A
8971902 GTTTCAAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.51, C:0.10, G:0.06, T:0.33
Consensus pattern (24 bp):
AAAATTGTAAAGATTCACATTCAA
Found at i:8971894 original size:46 final size:44
Alignment explanation
Indices: 8971681--8971969 Score: 172
Period size: 45 Copynumber: 6.4 Consensus size: 44
8971671 TTTAAAATTC
* * *
8971681 AAAGATTCTCATTCAAAAATTTTAGAGATTCACA-CCTAAAA-GTT
1 AAAGATT-TCATTCAAAAAATTTAAAGATTCACATCC-AAAATTTT
* * *
8971725 AAAGGTTTTCATTTAAAAAATTTAGAGATTCACAT-CAAAATTTT
1 AAA-GATTTCATTCAAAAAATTTAAAGATTCACATCCAAAATTTT
* * * * * * * *
8971769 CAAAAATTCACATTTAAAAACTTTAATA-TTTCACAACCAAAACTTC
1 -AAAGATT-TCATTCAAAAAATTTAA-AGATTCACATCCAAAATTTT
** * * *
8971815 AAAGATTCTCATTTGAAAATTTTCAAGGTTTCACATCCAAAATTTT
1 AAAGATT-TCATTCAAAAAATTT-AAAGATTCACATCCAAAATTTT
* * *
8971861 AAAGATTTACATTCAAAAAATTGTAAAGATTCACATTCAAAGTTTC
1 AAAGATTT-CATTCAAAAAATT-TAAAGATTCACATCCAAAATTTT
* ** * ** *
8971907 AAAGGTTTTTTTTCAAAAACTTTATGGCTTCACATCCAAAATTTT
1 AAA-GATTTCATTCAAAAAATTTAAAGATTCACATCCAAAATTTT
*
8971952 AAAGATTCTTATTCAAAA
1 AAAGATT-TCATTCAAAA
8971970 TAAATTTTAT
Statistics
Matches: 191, Mismatches: 41, Indels: 25
0.74 0.16 0.10
Matches are distributed among these distances:
43 4 0.02
44 35 0.18
45 75 0.39
46 72 0.38
47 5 0.03
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (44 bp):
AAAGATTTCATTCAAAAAATTTAAAGATTCACATCCAAAATTTT
Found at i:8972211 original size:34 final size:34
Alignment explanation
Indices: 8972173--8972238 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
8972163 AACAAACATC
*
8972173 ATGCAAATGCCT-TCTAAATGATGCAAATGCAATA
1 ATGCAAAT-CCTCACTAAATGATGCAAATGCAATA
* *
8972207 ATGCAGATTCTCACTAAATGATGCAAATGCAA
1 ATGCAAATCCTCACTAAATGATGCAAATGCAA
8972239 ATGTCATACA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 2 0.07
34 26 0.93
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (34 bp):
ATGCAAATCCTCACTAAATGATGCAAATGCAATA
Found at i:8973035 original size:14 final size:14
Alignment explanation
Indices: 8973018--8973068 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
8973008 CAGTTTAAGT
8973018 TTTTCTTTTACTTC
1 TTTTCTTTTACTTC
*
8973032 TTTTTTTTTACTT-
1 TTTTCTTTTACTTC
**
8973045 TTTTCTTTTTTTTTC
1 TTTTC-TTTTACTTC
8973060 TTTTCTTTT
1 TTTTCTTTT
8973069 TGCACATCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
13 4 0.13
14 22 0.71
15 5 0.16
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTCTTTTACTTC
Found at i:8973050 original size:18 final size:17
Alignment explanation
Indices: 8973017--8973063 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 17
8973007 TCAGTTTAAG
8973017 TTTTTCTTTTACTTCTTTT
1 TTTTTCTTTT--TTCTTTT
8973036 TTTTTACTTTTTTCTTTT
1 TTTTT-CTTTTTTCTTTT
8973054 TTTTTCTTTT
1 TTTTTCTTTT
8973064 CTTTTTGCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.19
18 12 0.44
19 5 0.19
20 5 0.19
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTCTTTTTTCTTTT
Found at i:8975569 original size:63 final size:63
Alignment explanation
Indices: 8975501--8975620 Score: 170
Period size: 63 Copynumber: 1.9 Consensus size: 63
8975491 TTATAAAAAT
*
8975501 ATAAAAAGATTATTTAAGGTATTTT-TCATACAAAAACGCCTTAAATAATCCTTTTATATTTTA
1 ATAAAAAGATTATTTAAGGTATTTTCT-ATACAAAAACACCTTAAATAATCCTTTTATATTTTA
* * * * *
8975564 ATAAAAGGATTATTTAAGGTATTTTCTGTACGAAAATACCTTAAATGATCCTTTTAT
1 ATAAAAAGATTATTTAAGGTATTTTCTATACAAAAACACCTTAAATAATCCTTTTAT
8975621 TTTGTTTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
63 49 0.98
64 1 0.02
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (63 bp):
ATAAAAAGATTATTTAAGGTATTTTCTATACAAAAACACCTTAAATAATCCTTTTATATTTTA
Found at i:8979453 original size:28 final size:27
Alignment explanation
Indices: 8979413--8979466 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
8979403 ATTTTGAAAC
8979413 TTAAGTTTTATAAATTTTACTTAAAAATT
1 TTAAGTTTTAT-AATTTTA-TTAAAAATT
8979442 TTAA-TTTTATAATTTTATTAAAAAT
1 TTAAGTTTTATAATTTTATTAAAAAT
8979467 AATTATCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 8 0.32
27 7 0.28
28 6 0.24
29 4 0.16
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (27 bp):
TTAAGTTTTATAATTTTATTAAAAATT
Found at i:8985002 original size:29 final size:28
Alignment explanation
Indices: 8984949--8985036 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 28
8984939 TTAGTGGTAT
*
8984949 TTTAAATTTTAGTAAAATATTTAATATAATA
1 TTTAAATTTTA--AAAATTTTTAAT-TAATA
8984980 TTTAAATTTTAAAAATTTTTAATTTAATA
1 TTTAAATTTTAAAAATTTTTAA-TTAATA
*
8985009 TTTAAA--TTATAAATTTATTAATTAATA
1 TTTAAATTTTAAAAATTT-TTAATTAATA
8985036 T
1 T
8985037 GATGTTTAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
27 16 0.30
28 4 0.08
29 21 0.40
30 1 0.02
31 11 0.21
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (28 bp):
TTTAAATTTTAAAAATTTTTAATTAATA
Found at i:8985153 original size:29 final size:29
Alignment explanation
Indices: 8985121--8985197 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
8985111 ATTAAAAAAA
* *
8985121 TTTATAATTCAAATATTATATTAAATATT
1 TTTATAATTTAAAAATTATATTAAATATT
* *
8985150 TTTAAAATTTAAACATTATATTAAATATT
1 TTTATAATTTAAAAATTATATTAAATATT
*
8985179 TTAATAATTTAAAAATTAT
1 TTTATAATTTAAAAATTAT
8985198 TTATGAAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (29 bp):
TTTATAATTTAAAAATTATATTAAATATT
Found at i:8992817 original size:15 final size:16
Alignment explanation
Indices: 8992797--8992826 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8992787 CATGAATTAT
8992797 TTTG-AAAGATTTTTA
1 TTTGAAAAGATTTTTA
8992812 TTTGAAAAGATTTTT
1 TTTGAAAAGATTTTT
8992827 TATTATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (16 bp):
TTTGAAAAGATTTTTA
Found at i:8993881 original size:5 final size:5
Alignment explanation
Indices: 8993853--8993949 Score: 58
Period size: 5 Copynumber: 19.2 Consensus size: 5
8993843 AATGTAAATA
* *
8993853 ATAAT AATAAT AATAAT ATGAT ATAAT ATACT AATAAT GATAA- A-AAT
1 ATAAT -ATAAT -ATAAT ATAAT ATAAT ATAAT -ATAAT -ATAAT ATAAT
* * * * *
8993900 ACAAT AGT-AT -TAAT ATGAT ATAAT ATATT ATACT ATAAT ATAAC ATAAT
1 ATAAT A-TAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
8993949 A
1 A
8993950 ATGCTAACTC
Statistics
Matches: 72, Mismatches: 13, Indels: 13
0.73 0.13 0.13
Matches are distributed among these distances:
3 3 0.04
4 4 0.06
5 46 0.64
6 19 0.26
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (5 bp):
ATAAT
Found at i:8994300 original size:114 final size:113
Alignment explanation
Indices: 8994124--8994461 Score: 313
Period size: 114 Copynumber: 3.0 Consensus size: 113
8994114 TGAGTTTGAG
* * ** * * *
8994124 AATGATCTAACCTGAGTCAAGATCGAATGACTGAGATGATACCACAAGTCT-A-AGTGCTACCAA
1 AATGATCTAACCTAAGCCAAGATCGAATGACTGAGACAATGCCGCGAGTCTGAGAGTG--ACCAA
* *
8994187 GATCGAGTCGAGGTTGTAAATGAATGATCGAGACGATGTCACGAGTCCAAA
64 GA-CGAGTCGAGGTCGTAAATGAATGATCGAGACGATGTCATGAGTCCAAA
* * * *
8994238 AATGATCTGACCTAAGCCAAGATCGAATGACTGGGACAATGCTGTGAGTCTGAGAGTGACCAAGA
1 AATGATCTAACCTAAGCCAAGATCGAATGACTGAGACAATGCCGCGAGTCTGAGAGTGACCAAGA
* * * * * * *
8994303 CCAAGTCGAGATCATAAATGAATGA-CTGAGACAATGCCATGAGTTCAAG
66 -CGAGTCGAGGTCGTAAATGAATGATC-GAGACGATGTCATGAGTCCAAA
* * ** * ** * *
8994352 AGTGATCTAACCTGAGTTAAGATCGAATGATTGAGATGATGCCGCGAGTTTGAGATTGACCAAGA
1 AATGATCTAACCTAAGCCAAGATCGAATGACTGAGACAATGCCGCGAGTCTGAGAGTGACCAAGA
* * *
8994417 CTGAGTCAAGGTCGTAAATGAATGATCGAAATGATGTCATGAGTC
66 C-GAGTCGAGGTCGTAAATGAATGATCGAGACGATGTCATGAGTC
8994462 TAAGCTAAAA
Statistics
Matches: 176, Mismatches: 43, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
113 2 0.01
114 168 0.95
115 2 0.01
116 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (113 bp):
AATGATCTAACCTAAGCCAAGATCGAATGACTGAGACAATGCCGCGAGTCTGAGAGTGACCAAGA
CGAGTCGAGGTCGTAAATGAATGATCGAGACGATGTCATGAGTCCAAA
Found at i:9005882 original size:28 final size:30
Alignment explanation
Indices: 9005851--9005916 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 30
9005841 ATTATGAAAC
9005851 TAAAAAAAT-AATAAGAAAAT-AAATAAAA
1 TAAAAAAATAAATAAGAAAATAAAATAAAA
*
9005879 TAAAGTAAAATGAAATATGAAAATAAAATAAAA
1 TAAA--AAAAT-AAATAAGAAAATAAAATAAAA
9005912 -AAAAA
1 TAAAAA
9005917 GGAAACCTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
28 4 0.12
30 7 0.22
32 13 0.41
33 8 0.25
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (30 bp):
TAAAAAAATAAATAAGAAAATAAAATAAAA
Found at i:9005916 original size:5 final size:5
Alignment explanation
Indices: 9005855--9005915 Score: 54
Period size: 5 Copynumber: 11.8 Consensus size: 5
9005845 TGAAACTAAA
* *
9005855 AAAAT AATAAG AAAAT -AAAT AAAAT AAAGT AAAAT GAAATAT GAAAAT
1 AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAA-AT -AAAAT
9005903 AAAAT AAAA- AAAA
1 AAAAT AAAAT AAAA
9005916 AGGAAACCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
4 8 0.17
5 25 0.52
6 9 0.19
7 6 0.12
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:9006325 original size:19 final size:19
Alignment explanation
Indices: 9006301--9006346 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
9006291 CCAAACCAAG
9006301 AAAAAACCTAAAAAAATCC
1 AAAAAACCTAAAAAAATCC
** *
9006320 AAAAAAAATAGAAAAATCC
1 AAAAAACCTAAAAAAATCC
9006339 AAAAAACC
1 AAAAAACC
9006347 CTCAAACCTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.72, C:0.17, G:0.02, T:0.09
Consensus pattern (19 bp):
AAAAAACCTAAAAAAATCC
Found at i:9006789 original size:3 final size:3
Alignment explanation
Indices: 9006783--9006840 Score: 57
Period size: 3 Copynumber: 19.3 Consensus size: 3
9006773 AAAAAACGTA
*
9006783 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT GAT -AT AAT ACACT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT
* *
9006828 AAT GAT AAA AAT A
1 AAT AAT AAT AAT A
9006841 CAATAGTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
2 4 0.09
3 39 0.83
4 2 0.04
5 2 0.04
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:9008491 original size:18 final size:17
Alignment explanation
Indices: 9008444--9008494 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 17
9008434 GGACTTTCAG
*
9008444 GAAAGAAGAAA-AAAAA
1 GAAAAAAGAAAGAAAAA
**
9008460 GAAAAAAGCTAGAAACAA
1 GAAAAAAGAAAGAAA-AA
9008478 GAAAAAAGAAAGAAAAA
1 GAAAAAAGAAAGAAAAA
9008495 ATTCATAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 8 0.29
17 5 0.18
18 15 0.54
ACGTcount: A:0.76, C:0.04, G:0.18, T:0.02
Consensus pattern (17 bp):
GAAAAAAGAAAGAAAAA
Found at i:9010165 original size:7 final size:7
Alignment explanation
Indices: 9010136--9010251 Score: 57
Period size: 7 Copynumber: 17.3 Consensus size: 7
9010126 GGGGTCCAGG
9010136 TTAGGG-
1 TTAGGGT
9010142 TTAGGGTT
1 TTAGGG-T
*
9010150 TTAGAGT
1 TTAGGGT
9010157 TTAGGGT
1 TTAGGGT
*
9010164 TTAAGG-
1 TTAGGGT
* *
9010170 TTAAGTT
1 TTAGGGT
*
9010177 TTAAGG-
1 TTAGGGT
9010183 TTAGGGT
1 TTAGGGT
*
9010190 TTA-GGA
1 TTAGGGT
*
9010196 TTAGGTT
1 TTAGGGT
9010203 TTAGGGTT
1 TTAGGG-T
*
9010211 TTA--AT
1 TTAGGGT
*
9010216 TTGGGGT
1 TTAGGGT
9010223 TTAGGGT
1 TTAGGGT
*
9010230 TT-GGAT
1 TTAGGGT
*
9010236 TTAGGAT
1 TTAGGGT
*
9010243 TTAGAGT
1 TTAGGGT
9010250 TT
1 TT
9010252 GGATTTGGAT
Statistics
Matches: 84, Mismatches: 17, Indels: 17
0.71 0.14 0.14
Matches are distributed among these distances:
5 3 0.04
6 26 0.31
7 46 0.55
8 9 0.11
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.46
Consensus pattern (7 bp):
TTAGGGT
Found at i:9010191 original size:26 final size:26
Alignment explanation
Indices: 9010147--9010210 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
9010137 TAGGGTTAGG
*
9010147 GTTTTAGAGTTTAGGGTTTAAGG-TTAA
1 GTTTTA-AGGTTAGGGTTT-AGGATTAA
*
9010174 GTTTTAAGGTTAGGGTTTAGGATTAG
1 GTTTTAAGGTTAGGGTTTAGGATTAA
*
9010200 GTTTTAGGGTT
1 GTTTTAAGGTT
9010211 TTAATTTGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 3 0.09
26 24 0.73
27 6 0.18
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.45
Consensus pattern (26 bp):
GTTTTAAGGTTAGGGTTTAGGATTAA
Found at i:9010192 original size:13 final size:13
Alignment explanation
Indices: 9010140--9010210 Score: 63
Period size: 13 Copynumber: 5.3 Consensus size: 13
9010130 TCCAGGTTAG
9010140 GGTTAGGGTTTTAGA
1 GGTTAGGG-TTTA-A
*
9010155 GTTTAGGGTTTAA
1 GGTTAGGGTTTAA
* *
9010168 GGTTAAGTTTTAA
1 GGTTAGGGTTTAA
9010181 GGTTAGGGTTT-A
1 GGTTAGGGTTTAA
* *
9010193 GGATTAGGTTTTAG
1 GG-TTAGGGTTTAA
9010207 GGTT
1 GGTT
9010211 TTAATTTGGG
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
12 3 0.07
13 30 0.65
14 6 0.13
15 7 0.15
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.44
Consensus pattern (13 bp):
GGTTAGGGTTTAA
Found at i:9010237 original size:20 final size:20
Alignment explanation
Indices: 9010183--9010263 Score: 85
Period size: 20 Copynumber: 4.1 Consensus size: 20
9010173 AGTTTTAAGG
*
9010183 TTAGGGTTTAGGA-TTAGGTT
1 TTAGGGTTT-GGATTTAGGAT
** * *
9010203 TTAGGGTTTTAATTTGGGGT
1 TTAGGGTTTGGATTTAGGAT
9010223 TTAGGGTTTGGATTTAGGAT
1 TTAGGGTTTGGATTTAGGAT
*
9010243 TTAGAGTTTGGATTT-GGAT
1 TTAGGGTTTGGATTTAGGAT
9010262 TT
1 TT
9010264 GAGGTTTGAC
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
19 7 0.14
20 44 0.86
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (20 bp):
TTAGGGTTTGGATTTAGGAT
Found at i:9010238 original size:13 final size:13
Alignment explanation
Indices: 9010222--9010263 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
9010212 TAATTTGGGG
*
9010222 TTTAGGGTTTGGA
1 TTTAGGATTTGGA
*
9010235 TTTAGGATTTAGA
1 TTTAGGATTTGGA
9010248 GTTT-GGATTTGGA
1 -TTTAGGATTTGGA
9010261 TTT
1 TTT
9010264 GAGGTTTGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 3 0.12
13 19 0.76
14 3 0.12
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (13 bp):
TTTAGGATTTGGA
Found at i:9012707 original size:32 final size:33
Alignment explanation
Indices: 9012671--9012733 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
9012661 AAAAGACTTG
*
9012671 GATATCACTATCGAGT-AAAACAAAGGACTTTA
1 GATATCACCATCGAGTGAAAACAAAGGACTTTA
*
9012703 GATATCACCATCGAGTGAAAACAAATGACTT
1 GATATCACCATCGAGTGAAAACAAAGGACTT
9012734 CGAATGTCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.24
Consensus pattern (33 bp):
GATATCACCATCGAGTGAAAACAAAGGACTTTA
Found at i:9012903 original size:35 final size:35
Alignment explanation
Indices: 9012864--9013098 Score: 138
Period size: 35 Copynumber: 6.8 Consensus size: 35
9012854 AAAAAATCGA
*
9012864 ATTTCACCACCAAGAAAGTTTTGAGAAAAGGTCAG
1 ATTTCACCACCGAGAAAGTTTTGAGAAAAGGTCAG
* ** * *
9012899 ATTTCACCACTGA-AGGGTTTTG-TAAAAGCTCAG
1 ATTTCACCACCGAGAAAGTTTTGAGAAAAGGTCAG
** * * * *
9012932 ACATCACCATCGAGAAAGTTTTGAGAAATGTTTAG
1 ATTTCACCACCGAGAAAGTTTTGAGAAAAGGTCAG
* * * * *
9012967 ATATCACTACTGAGAAAATTTTAAGAAAA-GTCAG
1 ATTTCACCACCGAGAAAGTTTTGAGAAAAGGTCAG
* ** * **
9013001 ATTTTACCACTAAGAGAA-TTTTAAGAAAA-GTTGG
1 ATTTCACCACCGAGA-AAGTTTTGAGAAAAGGTCAG
* * * * * *
9013035 ATTTCGCCATCGATAAAGTTTTGATAAAAAGTCAT
1 ATTTCACCACCGAGAAAGTTTTGAGAAAAGGTCAG
* * *
9013070 ATTTCACTATCGAGAAAGTTTTGACAAAA
1 ATTTCACCACCGAGAAAGTTTTGAGAAAA
9013099 TTCAAACTTG
Statistics
Matches: 149, Mismatches: 46, Indels: 10
0.73 0.22 0.05
Matches are distributed among these distances:
33 20 0.13
34 60 0.40
35 69 0.46
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (35 bp):
ATTTCACCACCGAGAAAGTTTTGAGAAAAGGTCAG
Found at i:9013241 original size:30 final size:30
Alignment explanation
Indices: 9013196--9013280 Score: 82
Period size: 31 Copynumber: 2.8 Consensus size: 30
9013186 TGAACTCTCA
* *
9013196 GATATTACCATTGAGATTTGAAAAAA-CTCG
1 GATATCACCACTGAGATTTGAAAAAATC-CG
** *
9013226 GATATCACCACTGAGAATTTTTAAATATCCG
1 GATATCACCACTGAG-ATTTGAAAAAATCCG
* *
9013257 GATAACACCACCGAGATTTGAAAA
1 GATATCACCACTGAGATTTGAAAA
9013281 CTTGGAATTT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
30 20 0.45
31 23 0.52
32 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (30 bp):
GATATCACCACTGAGATTTGAAAAAATCCG
Found at i:9013557 original size:23 final size:20
Alignment explanation
Indices: 9013531--9013592 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 20
9013521 TCTGTATCCA
9013531 TTCTTATTTTTTTTCAATTTTTC
1 TTCTT-TTTTTTTTC--TTTTTC
* *
9013554 TTCTTTTTTCCTTTCTTTTTG
1 TTCTTTTTT-TTTTCTTTTTC
9013575 TTC-TTTTTTTTTCTTTTT
1 TTCTTTTTTTTTTCTTTTT
9013593 TTAATCCAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
19 9 0.26
20 5 0.14
21 8 0.23
22 4 0.11
23 9 0.26
ACGTcount: A:0.05, C:0.15, G:0.02, T:0.79
Consensus pattern (20 bp):
TTCTTTTTTTTTTCTTTTTC
Found at i:9013584 original size:24 final size:22
Alignment explanation
Indices: 9013551--9013594 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
9013541 TTTTCAATTT
9013551 TTCTTCTTTTTTCCTTTCTTTTTG
1 TTCTTCTTTTTT-CTTT-TTTTTG
*
9013575 TTCTTTTTTTTTCTTTTTTT
1 TTCTTCTTTTTTCTTTTTTT
9013595 AATCCAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 4 0.21
24 11 0.58
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (22 bp):
TTCTTCTTTTTTCTTTTTTTTG
Found at i:9013594 original size:10 final size:10
Alignment explanation
Indices: 9013537--9013594 Score: 55
Period size: 10 Copynumber: 5.6 Consensus size: 10
9013527 TCCATTCTTA
*
9013537 TTTTTTTTCAA
1 TTTTTTTTC-T
*
9013548 TTTTTCTTCT
1 TTTTTTTTCT
9013558 TTTTTCCTTTC-
1 TTTTT--TTTCT
*
9013569 TTTTTGTTCT
1 TTTTTTTTCT
9013579 TTTTTTTTCT
1 TTTTTTTTCT
9013589 TTTTTT
1 TTTTTT
9013595 AATCCAACCA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
9 3 0.08
10 20 0.51
11 13 0.33
12 3 0.08
ACGTcount: A:0.03, C:0.14, G:0.02, T:0.81
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:9015334 original size:17 final size:17
Alignment explanation
Indices: 9015291--9015335 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
9015281 TTTTTCCCTA
9015291 TTTTCTT-TGTTTTGTTC
1 TTTTCTTAT-TTTTGTTC
*
9015308 --TTCCTATTTTTGTTC
1 TTTTCTTATTTTTGTTC
9015323 TTTTCTTATTTTT
1 TTTTCTTATTTTT
9015336 TTAATATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
15 12 0.52
16 1 0.04
17 10 0.43
ACGTcount: A:0.04, C:0.13, G:0.07, T:0.76
Consensus pattern (17 bp):
TTTTCTTATTTTTGTTC
Found at i:9015784 original size:23 final size:24
Alignment explanation
Indices: 9015734--9015784 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
9015724 AATCATTGAT
* *
9015734 TTTTTTTTTTCCCTATTTTCTTTG
1 TTTTGTTTTTCCCTATTTTCTTTC
9015758 TTTTGTTTTT-CCTATTTT-TGTTC
1 TTTTGTTTTTCCCTATTTTCT-TTC
9015781 TTTT
1 TTTT
9015785 CTTATTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 1 0.04
23 14 0.58
24 9 0.38
ACGTcount: A:0.04, C:0.14, G:0.06, T:0.76
Consensus pattern (24 bp):
TTTTGTTTTTCCCTATTTTCTTTC
Found at i:9016201 original size:458 final size:454
Alignment explanation
Indices: 9015118--9016031 Score: 1339
Period size: 458 Copynumber: 2.0 Consensus size: 454
9015108 TTGTTGGAAC
* * * * *
9015118 ATAACATAGGCCAAGATTCAGGATTGCCAAAGAAAAGGGTAAATAGGCCCAAAATAAGTATTTGA
1 ATAACATAGGACAAGATTCAAGATTG---AAGAAAAGGATAAATAGGCACAAAATAAGTATTTAA
** * * * * ** * ** ** *
9015183 GGGTGATTAAACCAAGGATAGTTTTTTTATTTAAAGGATTCACTTTGGGCCATATGTTTTTTTTA
63 GCATGTTTAAACCAATGAAAATAATTCTATTTAAATAAAGCACTTTGGG-CATATGGTTTTTTTA
* * *
9015248 TTTTTTTTGTATCTTCCACTTAATCATTGA-T--TTTTTTTCCCTATTTTCTTTGTTTTGTTCTT
127 TTTTCTTTGAATCTTCCACTTAATCATTCATTGATTTTTTTCCCTATTTTCTTTGTTTTGTTCTT
9015310 CCTATTTTTGTTCTTTTCTTATTTTTTTAATATCTTTCCCTTTTCCTACTTTCTTTCTTTCACCT
192 CCTATTTTTGTTCTTTTCTTATTTTTTTAATATCTTTCCCTTTTCCTACTTTCTTTCTTTCACCT
9015375 TCTTTTTTTTCTCTTTTTTTCCTTGAGTAAATTTAAAAACTTGGAGACCTTTTATTAGACATTTT
257 TCTTTTTTTTCTCTTTTTTTCCTTGAGTAAATTTAAAAACTTGGAGACCTTTTATTAGACATTTT
9015440 GCCCCCCAACTTATAAGGTTTGTTCTTAAACATTGTCATGCTTAATCCTTTCAATGCATCTTTTT
322 GCCCCCCAACTTATAAGGTTTGTTCTTAAACATTGTCATGCTTAATCCTTTCAATGCATCTTTTT
9015505 GCCCCCAAATGTTAAGGATGATTCTTGGTTAGGATTTATTTGGAAAGAATTTTCATCAGGCTCAA
387 GCCCCCAAATGTTAAGGATGATTCTTGGTTAGGATTTATTTGGAAAGAATTTTCATCAGGCTCAA
9015570 AGG
452 AGG
* * *
9015573 ATAACATAGGCCAAGATTCAAGATTGCCAAAGAAAAGGATAAATAGGCCCAAAATAAGTATTTGA
1 ATAACATAGGACAAGATTCAAGATTG---AAGAAAAGGATAAATAGGCACAAAATAAGTATTTAA
** * * ** * * ** *
9015638 GGGTGTTTAAACCAATGATAGTTTTTTTATTTAAATGATTCACTTTGGGCCATATGTTTTTTTTA
63 GCATGTTTAAACCAATGAAAATAATTCTATTTAAATAAAGCACTTTGGG-CATATGGTTTTTTTA
* * * ** *
9015703 TTTTTTTTGTATCTTCCACTTAATCATTGATTTTTTTTTTTCCCTATTTTCTTTGTTTTGTTTTT
127 TTTTCTTTGAATCTTCCACTTAATCATTCATTGATTTTTTTCCCTATTTTCTTTGTTTTGTTCTT
*
9015768 CCTATTTTTGTTCTTTTCTTATTTTTTTAATATCTTTCCCTTTTCCTACTTTCTTTCTTTCATCT
192 CCTATTTTTGTTCTTTTCTTATTTTTTTAATATCTTTCCCTTTTCCTACTTTCTTTCTTTCACCT
9015833 TCTTTTTTTTCTCTTTTTTTCCTTGAGTAAATTTAAAAACTTGGAGACCTTTTATTAGACATTTT
257 TCTTTTTTTTCTCTTTTTTTCCTTGAGTAAATTTAAAAACTTGGAGACCTTTTATTAGACATTTT
9015898 GCCCCCCAACTTATAAGGTTTGTTCTTAAACATTGTCATGCTTAATCCTTTCAATGCATCCTTTT
322 GCCCCCCAACTTATAAGGTTTGTTCTTAAACATTGTCATGCTTAATCCTTTCAATGCAT-CTTTT
9015963 TGCCCCCAAATGTTAAGGATGATTCTTGGTTAGGATTTATTTGGAAAGAATTTTCATCAGGCTCA
386 TGCCCCCAAATGTTAAGGATGATTCTTGGTTAGGATTTATTTGGAAAGAATTTTCATCAGGCTCA
9016028 AAGG
451 AAGG
9016032 GGTAGCAAGA
Statistics
Matches: 448, Mismatches: 7, Indels: 4
0.98 0.02 0.01
Matches are distributed among these distances:
455 155 0.35
456 1 0.00
458 218 0.49
459 74 0.17
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.46
Consensus pattern (454 bp):
ATAACATAGGACAAGATTCAAGATTGAAGAAAAGGATAAATAGGCACAAAATAAGTATTTAAGCA
TGTTTAAACCAATGAAAATAATTCTATTTAAATAAAGCACTTTGGGCATATGGTTTTTTTATTTT
CTTTGAATCTTCCACTTAATCATTCATTGATTTTTTTCCCTATTTTCTTTGTTTTGTTCTTCCTA
TTTTTGTTCTTTTCTTATTTTTTTAATATCTTTCCCTTTTCCTACTTTCTTTCTTTCACCTTCTT
TTTTTTCTCTTTTTTTCCTTGAGTAAATTTAAAAACTTGGAGACCTTTTATTAGACATTTTGCCC
CCCAACTTATAAGGTTTGTTCTTAAACATTGTCATGCTTAATCCTTTCAATGCATCTTTTTGCCC
CCAAATGTTAAGGATGATTCTTGGTTAGGATTTATTTGGAAAGAATTTTCATCAGGCTCAAAGG
Found at i:9016723 original size:16 final size:15
Alignment explanation
Indices: 9016703--9016743 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
9016693 GGAATCCCAA
*
9016703 ATTTTTTTTATTATT
1 ATTTTTTTTTTTATT
*
9016718 ATTTTTTTGGTTTATT
1 ATTTTTTT-TTTTATT
9016734 ATTTTTTTTT
1 ATTTTTTTTT
9016744 GAAATTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.15, C:0.00, G:0.05, T:0.80
Consensus pattern (15 bp):
ATTTTTTTTTTTATT
Found at i:9016733 original size:19 final size:18
Alignment explanation
Indices: 9016709--9016744 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
9016699 CCAAATTTTT
9016709 TTTATTATTATTTTTTTGG
1 TTTATTATT-TTTTTTTGG
9016728 TTTATTATTTTTTTTTG
1 TTTATTATTTTTTTTTG
9016745 AAATTGGCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (18 bp):
TTTATTATTTTTTTTTGG
Found at i:9019935 original size:37 final size:37
Alignment explanation
Indices: 9019894--9019979 Score: 102
Period size: 37 Copynumber: 2.3 Consensus size: 37
9019884 TGAGATAGAG
* **
9019894 TGCATGTACTA-CTTATTAAAATGTACATGGGATGGAA
1 TGCATGTACTATC-TATTAAAATATACATGAAATGGAA
* * *
9019931 TGCATGTACCATCTATTAACATATGCATGAAATGGAA
1 TGCATGTACTATCTATTAAAATATACATGAAATGGAA
9019968 TGCATGTACTAT
1 TGCATGTACTAT
9019980 ACATGTATTA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
37 40 0.98
38 1 0.02
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (37 bp):
TGCATGTACTATCTATTAAAATATACATGAAATGGAA
Found at i:9021026 original size:25 final size:25
Alignment explanation
Indices: 9021000--9021111 Score: 122
Period size: 25 Copynumber: 4.6 Consensus size: 25
9020990 GAACAACAAT
9021000 ATAT-AAT-AAATGACATAATTAAA
1 ATATGAATGAAATGACATAATTAAA
* * * *
9021023 ATATGCATGAGATGATATAACTAAA
1 ATATGAATGAAATGACATAATTAAA
*
9021048 ATATGGAA-GAAATAACATAATTAAA
1 ATAT-GAATGAAATGACATAATTAAA
* *
9021073 ATATGCATGAAATGAAATAATTAAA
1 ATATGAATGAAATGACATAATTAAA
*
9021098 ATATGCATGAAATG
1 ATATGAATGAAATG
9021112 TAAAACACAC
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
23 4 0.05
24 4 0.05
25 63 0.86
26 2 0.03
ACGTcount: A:0.54, C:0.05, G:0.12, T:0.28
Consensus pattern (25 bp):
ATATGAATGAAATGACATAATTAAA
Found at i:9021066 original size:50 final size:50
Alignment explanation
Indices: 9021007--9021102 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 50
9020997 AATATATAAT
* * *
9021007 AAATGACATAATTAAAATATGCATGAGATGATATAACTAAAATATGGAAG
1 AAATAACATAATTAAAATATGCATGAAATGAAATAACTAAAATATGGAAG
*
9021057 AAATAACATAATTAAAATATGCATGAAATGAAATAATTAAAATATG
1 AAATAACATAATTAAAATATGCATGAAATGAAATAACTAAAATATG
9021103 CATGAAATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.55, C:0.05, G:0.12, T:0.27
Consensus pattern (50 bp):
AAATAACATAATTAAAATATGCATGAAATGAAATAACTAAAATATGGAAG
Found at i:9021231 original size:9 final size:9
Alignment explanation
Indices: 9021189--9021230 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
9021179 AATCAAAACA
9021189 TTTTTTCAT
1 TTTTTTCAT
*
9021198 TTTTTTCAA
1 TTTTTTCAT
*
9021207 TTTTTTGAT
1 TTTTTTCAT
9021216 TTGTTTT-AT
1 TT-TTTTCAT
9021225 TTTTTT
1 TTTTTT
9021231 TCAAAATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
8 4 0.14
9 21 0.72
10 4 0.14
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.79
Consensus pattern (9 bp):
TTTTTTCAT
Found at i:9021693 original size:8 final size:8
Alignment explanation
Indices: 9021674--9021718 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
9021664 AATTAATTCC
9021674 TTTTCTTCT
1 TTTTCTT-T
*
9021683 TTTT-TCT
1 TTTTCTTT
9021690 TTTTCTTT
1 TTTTCTTT
9021698 TTTTCTTTT
1 TTTTC-TTT
9021707 TTTTCTTT
1 TTTTCTTT
9021715 TTTT
1 TTTT
9021719 TTAAACAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
7 5 0.16
8 15 0.47
9 12 0.38
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTCTTT
Found at i:9021701 original size:9 final size:9
Alignment explanation
Indices: 9021689--9021719 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
9021679 TTCTTTTTTC
9021689 TTTTTC-TT
1 TTTTTCTTT
9021697 TTTTTCTTT
1 TTTTTCTTT
9021706 TTTTTCTTT
1 TTTTTCTTT
9021715 TTTTT
1 TTTTT
9021720 TAAACAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 6 0.27
9 16 0.73
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:9021701 original size:14 final size:13
Alignment explanation
Indices: 9021682--9021720 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
9021672 CCTTTTCTTC
9021682 TTTTTTCTTTTTCT
1 TTTTTTCTTTTT-T
9021696 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
9021709 TTCTTTT-TTTTT
1 TT-TTTTCTTTTT
9021721 AAACAAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.33
14 16 0.67
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTCTTTTTT
Found at i:9021703 original size:21 final size:20
Alignment explanation
Indices: 9021673--9021720 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
9021663 AAATTAATTC
* *
9021673 CTTTTCTTCTTTTTTCTTTTT
1 CTTTTTTTCTTTTTT-TTCTT
9021694 CTTTTTTTCTTTTTTTTCTT
1 CTTTTTTTCTTTTTTTTCTT
9021714 -TTTTTTT
1 CTTTTTTT
9021721 AAACAAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.28
20 4 0.16
21 14 0.56
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (20 bp):
CTTTTTTTCTTTTTTTTCTT
Found at i:9021708 original size:23 final size:23
Alignment explanation
Indices: 9021674--9021720 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 23
9021664 AATTAATTCC
9021674 TTTTCTTCTTTTTTCTTTTTCTTT
1 TTTTCTTCTTTTTTCTTTTT-TTT
9021698 TTTTCTT-TTTTTTCTTTTTTTT
1 TTTTCTTCTTTTTTCTTTTTTTT
9021720 T
1 T
9021721 AAACAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 4 0.17
23 12 0.52
24 7 0.30
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (23 bp):
TTTTCTTCTTTTTTCTTTTTTTT
Found at i:9021711 original size:17 final size:16
Alignment explanation
Indices: 9021674--9021720 Score: 67
Period size: 17 Copynumber: 2.9 Consensus size: 16
9021664 AATTAATTCC
*
9021674 TTTTCTTCTTTTTTCT
1 TTTTCTTTTTTTTTCT
*
9021690 TTTTCTTTTTTTCTTTT
1 TTTTCTTTTTTT-TTCT
9021707 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
9021721 AAACAAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 13 0.46
17 15 0.54
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (16 bp):
TTTTCTTTTTTTTTCT
Found at i:9022197 original size:8 final size:7
Alignment explanation
Indices: 9022175--9022293 Score: 61
Period size: 7 Copynumber: 17.7 Consensus size: 7
9022165 TTAGGTTAGG
9022175 TTAGGG-
1 TTAGGGT
*
9022181 TTAGTGTT
1 TTAG-GGT
9022189 TTAGGGT
1 TTAGGGT
*
9022196 TTAAGG-
1 TTAGGGT
*
9022202 TTAGGTT
1 TTAGGGT
9022209 TTAGGGT
1 TTAGGGT
9022216 TTAGGGT
1 TTAGGGT
* *
9022223 TTA-AGA
1 TTAGGGT
*
9022229 TTAAGGT
1 TTAGGGT
**
9022236 TTATAGT
1 TTAGGGT
9022243 TTAGGGT
1 TTAGGGT
**
9022250 TTACAG-
1 TTAGGGT
*
9022256 TTAGAGT
1 TTAGGGT
9022263 TTA-GGT
1 TTAGGGT
*
9022269 TTAAGGT
1 TTAGGGT
*
9022276 TT-GGAT
1 TTAGGGT
*
9022282 TTGGGGT
1 TTAGGGT
9022289 TTAGG
1 TTAGG
9022294 AGTTAGATTT
Statistics
Matches: 84, Mismatches: 22, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
6 26 0.31
7 54 0.64
8 4 0.05
ACGTcount: A:0.21, C:0.01, G:0.34, T:0.45
Consensus pattern (7 bp):
TTAGGGT
Found at i:9022206 original size:27 final size:26
Alignment explanation
Indices: 9022172--9022277 Score: 101
Period size: 27 Copynumber: 4.0 Consensus size: 26
9022162 AGGTTAGGTT
*
9022172 AGGTTAGGGTTAGTGTTTTAGGGTTTA
1 AGGTTAGGTTTAGTG-TTTAGGGTTTA
*
9022199 AGGTTAGGTTTTAGGGTTTAGGGTTTA
1 AGGTTAGG-TTTAGTGTTTAGGGTTTA
*
9022226 AGATTAAGGTTTA-TAGTTTAGGGTTTA
1 AGGTT-AGGTTTAGT-GTTTAGGGTTTA
*
9022253 CA-GTTAGAGTTTAG-GTTTAAGGTTT
1 -AGGTTAG-GTTTAGTGTTTAGGGTTT
9022278 GGATTTGGGG
Statistics
Matches: 67, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
26 12 0.18
27 46 0.69
28 9 0.13
ACGTcount: A:0.23, C:0.01, G:0.32, T:0.44
Consensus pattern (26 bp):
AGGTTAGGTTTAGTGTTTAGGGTTTA
Found at i:9022209 original size:20 final size:21
Alignment explanation
Indices: 9022179--9022223 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
9022169 GTTAGGTTAG
9022179 GGTTAGTGTTTTAGGGTTTAA
1 GGTTAGTGTTTTAGGGTTTAA
*
9022200 GGTTAG-GTTTTAGGGTTTAG
1 GGTTAGTGTTTTAGGGTTTAA
9022220 GGTT
1 GGTT
9022224 TAAGATTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.16, C:0.00, G:0.38, T:0.47
Consensus pattern (21 bp):
GGTTAGTGTTTTAGGGTTTAA
Found at i:9022211 original size:13 final size:13
Alignment explanation
Indices: 9022189--9022269 Score: 67
Period size: 13 Copynumber: 6.2 Consensus size: 13
9022179 GGTTAGTGTT
9022189 TTAGGGTTTAAGG
1 TTAGGGTTTAAGG
* *
9022202 TTAGGTTTTAGGG
1 TTAGGGTTTAAGG
*
9022215 TTTAGGGTTTAAGA
1 -TTAGGGTTTAAGG
* *
9022229 TTAAGGTTTATAGT
1 TTAGGGTTTA-AGG
9022243 TTAGGGTTTACA-G
1 TTAGGGTTTA-AGG
*
9022256 TTAGAGTTT-AGG
1 TTAGGGTTTAAGG
9022268 TT
1 TT
9022270 TAAGGTTTGG
Statistics
Matches: 54, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
11 1 0.02
12 3 0.06
13 28 0.52
14 22 0.41
ACGTcount: A:0.23, C:0.01, G:0.31, T:0.44
Consensus pattern (13 bp):
TTAGGGTTTAAGG
Found at i:9022291 original size:20 final size:20
Alignment explanation
Indices: 9022266--9022330 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
9022256 TTAGAGTTTA
9022266 GGTTTAAGG-TTTGGATTTGG
1 GGTTT-AGGATTTGGATTTGG
* * *
9022286 GGTTTAGGAGTTAGATTTAG
1 GGTTTAGGATTTGGATTTGG
* *
9022306 GGTATAGGTTTTGGATTTGG
1 GGTTTAGGATTTGGATTTGG
9022326 GGTTT
1 GGTTT
9022331 CACAAAAATT
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
19 3 0.09
20 32 0.91
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.45
Consensus pattern (20 bp):
GGTTTAGGATTTGGATTTGG
Found at i:9022298 original size:40 final size:39
Alignment explanation
Indices: 9022246--9022330 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 39
9022236 TTATAGTTTA
*
9022246 GGGTTTACAGTTAGAGTTTA-GGTTTAAGG-TTTGGATTTG
1 GGGTTTACAGTTAGA-TTTAGGGTAT-AGGTTTTGGATTTG
*
9022285 GGGTTTAGGAGTTAGATTTAGGGTATAGGTTTTGGATTTG
1 GGGTTTA-CAGTTAGATTTAGGGTATAGGTTTTGGATTTG
9022325 GGGTTT
1 GGGTTT
9022331 CACAAAAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
39 14 0.34
40 27 0.66
ACGTcount: A:0.19, C:0.01, G:0.36, T:0.44
Consensus pattern (39 bp):
GGGTTTACAGTTAGATTTAGGGTATAGGTTTTGGATTTG
Found at i:9022613 original size:23 final size:22
Alignment explanation
Indices: 9022563--9022613 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
9022553 TTTTTGTTAT
*
9022563 TCAAAATCCAACCAAACAACCT
1 TCAAAATCCAACCAAACAACCA
*
9022585 TAAAAAT-CAACCAAAACCAACCA
1 TCAAAATCCAACC-AAA-CAACCA
9022608 TCAAAA
1 TCAAAA
9022614 CAAGCATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 5 0.21
22 9 0.38
23 10 0.42
ACGTcount: A:0.57, C:0.31, G:0.00, T:0.12
Consensus pattern (22 bp):
TCAAAATCCAACCAAACAACCA
Found at i:9023103 original size:85 final size:85
Alignment explanation
Indices: 9022946--9023108 Score: 218
Period size: 85 Copynumber: 1.9 Consensus size: 85
9022936 TCTTGACACC
* * * * **
9022946 TAAAATAGATTCAGCTTGAAAGAGTTACAAATTTTGCCTAGAGGACTTAAAGATTATGCCTAAAG
1 TAAAATAGATTCAACTTAAAAGACTTACAAATCTTGCCTAGAGGACTTAAAGACCATGCCTAAAG
9023011 GTCTTATAAATCTCGTTATT
66 GTCTTATAAATCTCGTTATT
* * * **
9023031 TAAAATAGATTCAACTTAAAAGACTTACCAATCTTGCCTGGAGGACTTAAAGACCATGCTTGGAG
1 TAAAATAGATTCAACTTAAAAGACTTACAAATCTTGCCTAGAGGACTTAAAGACCATGCCTAAAG
*
9023096 GTTTTATAAATCT
66 GTCTTATAAATCT
9023109 TAACATCTAT
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
85 66 1.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.33
Consensus pattern (85 bp):
TAAAATAGATTCAACTTAAAAGACTTACAAATCTTGCCTAGAGGACTTAAAGACCATGCCTAAAG
GTCTTATAAATCTCGTTATT
Found at i:9033087 original size:33 final size:33
Alignment explanation
Indices: 9032997--9033220 Score: 156
Period size: 33 Copynumber: 6.8 Consensus size: 33
9032987 CTCAATCTTT
*
9032997 GTGCTAGCTAAACT-GAGCTTAAAATCTTGATCTAG
1 GTGCCAGCTAAACTAG-GCTT-AAATCTT-ATCTAG
* *
9033032 GTGCCAACTAAGCTAGGC-TAAATCTTATCTAG
1 GTGCCAGCTAAACTAGGCTTAAATCTTATCTAG
* *
9033064 GTGCCAGCTAAATTAGGCTTAAATCTCAATCTAG
1 GTGCCAGCTAAACTAGGCTTAAATCT-TATCTAG
* * * * * *
9033098 GTGCTAGCTAAATTGGGC-TCAATTTTGATCTGG
1 GTGCCAGCTAAACTAGGCTTAAATCTT-ATCTAG
** * *
9033131 GTGCTTGCTAAACTAGGCTT-AATCTTCTCTGG
1 GTGCCAGCTAAACTAGGCTTAAATCTTATCTAG
* * * *
9033163 GTACCAGTTAAACT-GGATTTAAATCTCATC--G
1 GTGCCAGCTAAACTAGG-CTTAAATCTTATCTAG
* *
9033194 ATGCCAACTAAACTAGGCTTAAATCTT
1 GTGCCAGCTAAACTAGGCTTAAATCTT
9033221 TTTTTTTTCA
Statistics
Matches: 150, Mismatches: 31, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
31 21 0.14
32 40 0.27
33 51 0.34
34 24 0.16
35 13 0.09
36 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (33 bp):
GTGCCAGCTAAACTAGGCTTAAATCTTATCTAG
Found at i:9033416 original size:21 final size:21
Alignment explanation
Indices: 9033376--9033457 Score: 86
Period size: 21 Copynumber: 4.1 Consensus size: 21
9033366 CAAGCTATAC
*
9033376 TTCTTTGTTTCT-TTT-TTTT
1 TTCTTTCTTTCTCTTTATTTT
*
9033395 TT-TCTCTTTCTCTTTATTTT
1 TTCTTTCTTTCTCTTTATTTT
*
9033415 TTCTTTCTTGCTCTTTATTTT
1 TTCTTTCTTTCTCTTTATTTT
9033436 TTCTTTTCTTT-TC--TATTTT
1 TTC-TTTCTTTCTCTTTATTTT
9033455 TTC
1 TTC
9033458 CAAACCCTCT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
18 7 0.13
19 14 0.26
20 6 0.11
21 21 0.39
22 6 0.11
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.77
Consensus pattern (21 bp):
TTCTTTCTTTCTCTTTATTTT
Found at i:9033448 original size:27 final size:28
Alignment explanation
Indices: 9033383--9033449 Score: 72
Period size: 26 Copynumber: 2.5 Consensus size: 28
9033373 TACTTCTTTG
* *
9033383 TTTCTTTT-TTTT-TTTCTCTTTCTCTT
1 TTTCTTTTCTTTTCTTGCTCTTTATCTT
9033409 TATT-TTTTC-TTTCTTGCTCTTTAT-TT
1 T-TTCTTTTCTTTTCTTGCTCTTTATCTT
9033435 TTTCTTTTCTTTTCT
1 TTTCTTTTCTTTTCT
9033450 ATTTTTTCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
25 2 0.06
26 16 0.47
27 16 0.47
ACGTcount: A:0.03, C:0.18, G:0.01, T:0.78
Consensus pattern (28 bp):
TTTCTTTTCTTTTCTTGCTCTTTATCTT
Found at i:9040940 original size:3 final size:3
Alignment explanation
Indices: 9040934--9040968 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
9040924 TTTTAAAATC
**
9040934 ATT ATT ATT ATT ATT GCT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
9040969 GCCTAACTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:9042673 original size:143 final size:142
Alignment explanation
Indices: 9042451--9042779 Score: 362
Period size: 142 Copynumber: 2.3 Consensus size: 142
9042441 TCATATTTTG
* * * * * **
9042451 GATTTTAAA-GCATCAAAAATCATGAAATATTATAAAATTAAGATTTGAAAAGTTTCGTGAAAAT
1 GATTTCAAATGCACCAAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCGACAAAAT
* *
9042515 CTAAGCTCGGAAGGCTAAATCATGAAAATACCTTTAAAAGGTATTTTAGTAATTCCGCACAT-TC
66 CTAAGCTCGGAAGGCTAAATCATGAAAATACCCTTAAAA-GCATTTTAGTAATT--GCACATCTC
**
9042579 TAAGG-TACTGTTGT
128 TAAGGTTACTACTGT
* *
9042593 GATTTCAAATGCACCAAGAATCATGAGATATTATGAAATTAAGATCTAAAAAGTTTC-ACAAAAT
1 GATTTCAAATGCACCAAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCGACAAAAT
* * * * * *
9042657 -TCAAGCTTGATAAGGCTAAATTATGAAAATACCCTTAAAAGCATTTTGGTAATTTCATATCTCT
66 CT-AAGCTCG-GAAGGCTAAATCATGAAAATACCCTTAAAAGCATTTTAGTAATTGCACATCTCT
**
9042721 CGGGTTACTACTGT
129 AAGGTTACTACTGT
* * *
9042735 GATTTCAAATGTACAAAAAATCATTAAATATTATGAAATTAAGAT
1 GATTTCAAATGCACCAAAAATCATGAAATATTATGAAATTAAGAT
9042780 GTGGAAAAAT
Statistics
Matches: 156, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
140 4 0.03
141 6 0.04
142 78 0.50
143 68 0.44
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (142 bp):
GATTTCAAATGCACCAAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCGACAAAAT
CTAAGCTCGGAAGGCTAAATCATGAAAATACCCTTAAAAGCATTTTAGTAATTGCACATCTCTAA
GGTTACTACTGT
Found at i:9046565 original size:16 final size:15
Alignment explanation
Indices: 9046546--9046597 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
9046536 TAAATTTCTA
9046546 TTTTATTTATTTTTT
1 TTTTATTTATTTTTT
* *
9046561 ATTTTCTTGATTTTTT
1 -TTTTATTTATTTTTT
* *
9046577 TATTATTCTAATTTTT
1 TTTTATT-TATTTTTT
9046593 TTTTA
1 TTTTA
9046598 AAAGTCCAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
15 5 0.18
16 23 0.82
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTATTTATTTTTT
Found at i:9046577 original size:17 final size:17
Alignment explanation
Indices: 9046555--9046594 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
9046545 ATTTTATTTA
*
9046555 TTTTTTATT-TTCTTGAT
1 TTTTTTATTATTC-TAAT
9046572 TTTTTTATTATTCTAAT
1 TTTTTTATTATTCTAAT
9046589 TTTTTT
1 TTTTTT
9046595 TTAAAAGTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTTTATTATTCTAAT
Found at i:9049782 original size:62 final size:62
Alignment explanation
Indices: 9049687--9049820 Score: 168
Period size: 62 Copynumber: 2.2 Consensus size: 62
9049677 GAAGGGGATT
* *
9049687 ATTATTGAAGGTATTTTTTGCCAAAAATTCCTTCAATAATCT-CATC-TAAAAAATTGGAAGG-G
1 ATTATTCAAGGTATTTTTTGCCAAAAATACCTTCAATAATCTAC-TCAT-AAAAATT-GAAGGAG
* *
9049749 ATTATTCAAGGT-GTTTTTGTCCAAAAATACCTTCAATAATCTACTCATAAAAATTTAAGGAG
1 ATTATTCAAGGTATTTTTTG-CCAAAAATACCTTCAATAATCTACTCATAAAAATTGAAGGAG
9049811 ATTATTCAAG
1 ATTATTCAAG
9049821 CCATTTTTGG
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
61 10 0.16
62 52 0.81
63 2 0.03
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (62 bp):
ATTATTCAAGGTATTTTTTGCCAAAAATACCTTCAATAATCTACTCATAAAAATTGAAGGAG
Found at i:9051192 original size:3 final size:3
Alignment explanation
Indices: 9051184--9051230 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
9051174 GTTTTTTACT
9051184 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
9051231 GCTTTTCTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:9053106 original size:114 final size:113
Alignment explanation
Indices: 9052968--9053190 Score: 281
Period size: 114 Copynumber: 2.0 Consensus size: 113
9052958 ATAATATTTT
* **
9052968 ATGATTTTTGGTGCATTTAAAATCATTGCAATA-CCTCAAAAAGGGTAAAATTACCAAAATAACC
1 ATGATTTTTGGTGCACTTAAAATCATTGCAATACCCT-AAAAAGAATAAAATTACCAAAAT-ACC
* *
9053032 -TTAG-AGAGGTATTTTCATAATTTGGCTTTCTCTAGCTCAAAATTTCGTGC
64 TTTAGAAG-GGTA-TTTCATAATTTAGCTTTCTCGAGCTCAAAATTTCGTGC
* * * *
9053082 ATGATTTTTGGTGCACTTCAAATCATTGTAGTACCCTAGAAAGAATAAAATTACCAAAATACCTT
1 ATGATTTTTGGTGCACTTAAAATCATTGCAATACCCTAAAAAGAATAAAATTACCAAAATACCTT
* * *
9053147 TATAAGGGTATTTCGTAATTTAGCTTTTTCGAGCTCAAAATTTC
66 TAGAAGGGTATTTCATAATTTAGCTTTCTCGAGCTCAAAATTTC
9053191 ATAGCACCTT
Statistics
Matches: 94, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
113 33 0.35
114 56 0.60
115 5 0.05
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (113 bp):
ATGATTTTTGGTGCACTTAAAATCATTGCAATACCCTAAAAAGAATAAAATTACCAAAATACCTT
TAGAAGGGTATTTCATAATTTAGCTTTCTCGAGCTCAAAATTTCGTGC
Found at i:9053259 original size:144 final size:144
Alignment explanation
Indices: 9053081--9053393 Score: 341
Period size: 144 Copynumber: 2.2 Consensus size: 144
9053071 AAATTTCGTG
* * * * *
9053081 CATGATTTTTGGTGCACTTCAAATCATTGTAGTACC-CTAGAAAGAATA-AAATTACCAAAATAC
1 CATGATTTTTGGTGTATTTAAAATCATAGCAGTACCTC-A-AAA-AATAGAAATTACCAAAATAC
* * * * *
9053144 CTTTATAAGGGTA-TTTCGTAATTTAG-CTTTTTCGAGCTCAAAATTTCAT-AGCACCTTTTAGA
63 CCTTATAAAGGTATTTTCGTAATTTAGTCTTCTT-GAGCTCAAAATTTCATGA-AAACTTTTAGA
*
9053206 TCTTAATTTCATAATATTT
126 TCTCAATTTCATAATATTT
* * *
9053225 CATGATTTTTTGTGTATTTGAAATCATAGCAGTACCTCAAAAAATATGAAATTACTAAAATACCC
1 CATGATTTTTGGTGTATTTAAAATCATAGCAGTACCTCAAAAAATA-GAAATTACCAAAATACCC
* * * * *
9053290 TTATAAAGGTATTTTTGTAATTTTGTCTTCTTGAGCTCAGAATTTTATGAAAATTTTTAGATCTC
65 TTATAAAGGTATTTTCGTAATTTAGTCTTCTTGAGCTCAAAATTTCATGAAAACTTTTAGATCTC
*
9053355 AATTTTATAATATTT
130 AATTTCATAATATTT
*
9053370 TATGATTTTTGGTGT-TTTAAAATC
1 CATGATTTTTGGTGTATTTAAAATC
9053394 CTAAAAAATG
Statistics
Matches: 141, Mismatches: 22, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
142 4 0.03
143 3 0.02
144 64 0.45
145 64 0.45
146 6 0.04
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (144 bp):
CATGATTTTTGGTGTATTTAAAATCATAGCAGTACCTCAAAAAATAGAAATTACCAAAATACCCT
TATAAAGGTATTTTCGTAATTTAGTCTTCTTGAGCTCAAAATTTCATGAAAACTTTTAGATCTCA
ATTTCATAATATTT
Found at i:9053375 original size:145 final size:143
Alignment explanation
Indices: 9053129--9053393 Score: 336
Period size: 145 Copynumber: 1.8 Consensus size: 143
9053119 AGAAAGAATA
* * *
9053129 AAATTACCAAAATACCTTTATAAGGGTATTTCGTAATTTAGCTTTTTCGAGCTCAAAATTTCATA
1 AAATTACCAAAATACCCTTATAAAGGTATTTCGTAATTTAGCTTCTTCGAGCTCAAAATTTCATA
* * * * *
9053194 GCACCTTTTAGATCTTAATTTCATAATATTTCATGATTTTTTGTGTATTTGAAATCATAGCAGTA
66 GAAACTTTTAGATCTCAATTTCATAATATTTCATGATTTTTGGTGT-TTTAAAATCATAGCAGTA
9053259 CCTCAAAAAATATG
130 CCTCAAAAAATATG
* * * * *
9053273 AAATTACTAAAATACCCTTATAAAGGTATTTTTGTAATTTTGTCTTCTT-GAGCTCAGAATTTTA
1 AAATTACCAAAATACCCTTATAAAGGTA-TTTCGTAATTTAG-CTTCTTCGAGCTCAAAATTTCA
* * *
9053337 T-GAAAATTTTTAGATCTCAATTTTATAATATTTTATGATTTTTGGTGTTTTAAAATC
64 TAG-AAACTTTTAGATCTCAATTTCATAATATTTCATGATTTTTGGTGTTTTAAAATC
9053394 CTAAAAAATG
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
144 34 0.33
145 63 0.62
146 5 0.05
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (143 bp):
AAATTACCAAAATACCCTTATAAAGGTATTTCGTAATTTAGCTTCTTCGAGCTCAAAATTTCATA
GAAACTTTTAGATCTCAATTTCATAATATTTCATGATTTTTGGTGTTTTAAAATCATAGCAGTAC
CTCAAAAAATATG
Found at i:9055603 original size:3 final size:3
Alignment explanation
Indices: 9055595--9055621 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
9055585 AAGTACAATA
9055595 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
9055622 GGGACAAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:9059809 original size:15 final size:14
Alignment explanation
Indices: 9059784--9059823 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
9059774 TGATTGTAAC
9059784 AAAAAAAA-AAAAA
1 AAAAAAAAGAAAAA
*
9059797 AAAAAAATGAAAAA
1 AAAAAAAAGAAAAA
9059811 AAAAAAAAGAAAA
1 AAAAAAAAGAAAA
9059824 TGAAAACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 7 0.29
14 17 0.71
ACGTcount: A:0.93, C:0.00, G:0.05, T:0.03
Consensus pattern (14 bp):
AAAAAAAAGAAAAA
Found at i:9059835 original size:1 final size:1
Alignment explanation
Indices: 9059784--9059823 Score: 53
Period size: 1 Copynumber: 40.0 Consensus size: 1
9059774 TGATTGTAAC
** *
9059784 AAAAAAAAAAAAAAAAAAAATGAAAAAAAAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
9059824 TGAAAACAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.93, C:0.00, G:0.05, T:0.03
Consensus pattern (1 bp):
A
Found at i:9059840 original size:21 final size:20
Alignment explanation
Indices: 9059786--9059840 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
9059776 ATTGTAACAA
*
9059786 AAAAAAAAAAAAAAAAAATG
1 AAAAAAAAAAAAAGAAAATG
9059806 AAAAAAAAAAAAAGAAAATG
1 AAAAAAAAAAAAAGAAAATG
*
9059826 AAAACAAAAACAAAG
1 AAAA-AAAAAAAAAG
9059841 GAGTTTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 23 0.72
21 9 0.28
ACGTcount: A:0.85, C:0.04, G:0.07, T:0.04
Consensus pattern (20 bp):
AAAAAAAAAAAAAGAAAATG
Found at i:9062069 original size:12 final size:12
Alignment explanation
Indices: 9062052--9062076 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9062042 AAAAAGAGTC
9062052 TTCACATTTGCA
1 TTCACATTTGCA
9062064 TTCACATTTGCA
1 TTCACATTTGCA
9062076 T
1 T
9062077 CACTTGCATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.44
Consensus pattern (12 bp):
TTCACATTTGCA
Found at i:9062249 original size:53 final size:51
Alignment explanation
Indices: 9062192--9062362 Score: 165
Period size: 53 Copynumber: 3.3 Consensus size: 51
9062182 GCATAAAAAA
9062192 AAAGACATTTGCATTTGCATCATTTGCATTCGCACTTATGTGTGCATCATGAG
1 AAAGACATTTGCATTTGCATCATTTGCATT--CACTTATGTGTGCATCATGAG
* ** *
9062245 AAAGACATTTGCA-TT-CA-CATTTGCA-TCACTTGCATCTGT--ATCACAAAA
1 AAAGACATTTGCATTTGCATCATTTGCATTCACTT--ATGTGTGCATCA-TGAG
** *
9062293 AAAGACATTCACATTTCCATCATTTGCATTTACACTTATGTGTGCATCATGAG
1 AAAGACATTTGCATTTGCATCATTTGCA-TT-CACTTATGTGTGCATCATGAG
*
9062346 AAAGGCATTTGCATTTG
1 AAAGACATTTGCATTTG
9062363 TATTACTTGC
Statistics
Matches: 93, Mismatches: 14, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
47 9 0.10
48 12 0.13
49 8 0.09
50 10 0.11
51 10 0.11
52 7 0.08
53 28 0.30
54 9 0.10
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (51 bp):
AAAGACATTTGCATTTGCATCATTTGCATTCACTTATGTGTGCATCATGAG
Found at i:9062329 original size:101 final size:99
Alignment explanation
Indices: 9062055--9062360 Score: 372
Period size: 94 Copynumber: 3.1 Consensus size: 99
9062045 AAGAGTCTTC
* *
9062055 ACATTTGCATTCACATTTGCATCACTTGCATCTACATAAAAAAAAGGACATTCGCCTTTACATCA
1 ACATTTGCATTCACATTTGCATCACTTGCATCTGCATAAAAAAAA-GACATTCGCATTTACATCA
* * * *
9062120 TTTGTAATCACACTTATGTGTGCATTATAAGAAAG
65 TTTGCATTCACACTTATGTGTGCATCATGAGAAAG
* * * * * *
9062155 ATATTTG------CATTTGTATCAATTACATCTGCATAAAAAAAAAGACATTTGCATTTGCATCA
1 ACATTTGCATTCACATTTGCATCACTTGCATCTGCAT-AAAAAAAAGACATTCGCATTTACATCA
*
9062214 TTTGCATTCGCACTTATGTGTGCATCATGAGAAAG
65 TTTGCATTCACACTTATGTGTGCATCATGAGAAAG
* * *
9062249 ACATTTGCATTCACATTTGCATCACTTGCATCTGTATCACAAAAAAAGACATTCACATTTCCATC
1 ACATTTGCATTCACATTTGCATCACTTGCATCTGCAT-A-AAAAAAAGACATTCGCATTTACATC
*
9062314 ATTTGCATTTACACTTATGTGTGCATCATGAGAAAG
64 ATTTGCATTCACACTTATGTGTGCATCATGAGAAAG
*
9062350 GCATTTGCATT
1 ACATTTGCATT
9062361 TGTATTACTT
Statistics
Matches: 173, Mismatches: 25, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
94 72 0.42
95 8 0.05
100 27 0.16
101 66 0.38
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.34
Consensus pattern (99 bp):
ACATTTGCATTCACATTTGCATCACTTGCATCTGCATAAAAAAAAGACATTCGCATTTACATCAT
TTGCATTCACACTTATGTGTGCATCATGAGAAAG
Found at i:9062379 original size:21 final size:21
Alignment explanation
Indices: 9062350--9062397 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
9062340 CATGAGAAAG
* *
9062350 GCATTTGCATTTGTATTACTT
1 GCATCTGCATTTGTATCACTT
9062371 GCATCTGCATTTGTATCACTT
1 GCATCTGCATTTGTATCACTT
9062392 GCATCT
1 GCATCT
9062398 ACGTAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.46
Consensus pattern (21 bp):
GCATCTGCATTTGTATCACTT
Found at i:9062380 original size:101 final size:100
Alignment explanation
Indices: 9062093--9062389 Score: 315
Period size: 101 Copynumber: 3.0 Consensus size: 100
9062083 CATCTACATA
* * * * * *
9062093 AAAAAAAGGACATTCGCCTTTACATCATTTGTAATCACACTTATGTGTGCATTATAAGAAAGATA
1 AAAAAAA-GACATTCGCATTTACATCATTTGCATTCACACTTATGTGTGCATCATGAGAAAGACA
*
9062158 TTTGCATTTGTATCAATTACATCTGCA---TA--A-
65 TTTGCATTTGTATCAATTGCATCTGCATTGTATCAC
* * *
9062188 AAAAAAAGACATTTGCATTTGCATCATTTGCATTCGCACTTATGTGTGCATCATGAGAAAGACAT
1 AAAAAAAGACATTCGCATTTACATCATTTGCATTCACACTTATGTGTGCATCATGAGAAAGACAT
* *
9062253 TTGCA-TT-CA-CATTTGCATCACTTGCATCTGTATCAC
66 TTGCATTTGTATCAATTGCAT--C-TGCAT-TGTATCAC
* * * *
9062289 AAAAAAAGACATTCACATTTCCATCATTTGCATTTACACTTATGTGTGCATCATGAGAAAGGCAT
1 AAAAAAAGACATTCGCATTTACATCATTTGCATTCACACTTATGTGTGCATCATGAGAAAGACAT
* *
9062354 TTGCATTTGTATTACTTGCATCTGCATTTGTATCAC
66 TTGCATTTGTATCAATTGCATCTGCA-TTGTATCAC
9062390 TTGCATCTAC
Statistics
Matches: 167, Mismatches: 21, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
91 7 0.04
92 1 0.01
93 3 0.02
94 58 0.35
95 7 0.04
98 2 0.01
100 1 0.01
101 76 0.46
102 4 0.02
103 1 0.01
104 7 0.04
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (100 bp):
AAAAAAAGACATTCGCATTTACATCATTTGCATTCACACTTATGTGTGCATCATGAGAAAGACAT
TTGCATTTGTATCAATTGCATCTGCATTGTATCAC
Found at i:9062443 original size:155 final size:154
Alignment explanation
Indices: 9062256--9062534 Score: 477
Period size: 155 Copynumber: 1.8 Consensus size: 154
9062246 AAGACATTTG
*
9062256 CATTCACATTTGCATCACTTGCATCTGTATCACAAAAAAAGACATTCACATTTCCATCATTTGCA
1 CATTCACATTTGCATCACTTGCATCTGCATCACAAAAAAAGACATTCACATTTCCATCATTTGCA
* * *
9062321 TTTACACTTATGTGTGCATCATGAGAAAGGCATTTGCATTTGTATTACTTGCATCTGCATTTGTA
66 TTCACACTTATGTGTGCATCATGAGAAAGGCATTTG-ATTAGTATCACTTGCATCTGCATTTGTA
9062386 TCACTTGCATCTACGTAAAAAAAGA
130 TCACTTGCATCTACGTAAAAAAAGA
* *
9062411 CATTCATATTTGCATCACTTGCATCTGCATCACAAAAAAAGACATTCACATTTGCATCATTTGCA
1 CATTCACATTTGCATCACTTGCATCTGCATCACAAAAAAAGACATTCACATTTCCATCATTTGCA
* *
9062476 TTCACACTTATGTGTGCATCATGATAAAGGCATTTGATTAGTATCGCTTGCATCTGCAT
66 TTCACACTTATGTGTGCATCATGAGAAAGGCATTTGATTAGTATCACTTGCATCTGCAT
9062535 AAAAAAGAGA
Statistics
Matches: 116, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
154 20 0.17
155 96 0.83
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (154 bp):
CATTCACATTTGCATCACTTGCATCTGCATCACAAAAAAAGACATTCACATTTCCATCATTTGCA
TTCACACTTATGTGTGCATCATGAGAAAGGCATTTGATTAGTATCACTTGCATCTGCATTTGTAT
CACTTGCATCTACGTAAAAAAAGA
Found at i:9062464 original size:42 final size:42
Alignment explanation
Indices: 9062378--9062610 Score: 136
Period size: 42 Copynumber: 5.4 Consensus size: 42
9062368 CTTGCATCTG
* **
9062378 CATTTGTATCACTTGCATCT--A-CGTAAAAAAAGACATTCA
1 CATTTGCATCACTTGCATCTGCATCACAAAAAAAGACATTCA
*
9062417 TATTTGCATCACTTGCATCTGCATCACAAAAAAAGACATTCA
1 CATTTGCATCACTTGCATCTGCATCACAAAAAAAGACATTCA
* ** * * * *
9062459 CATTTGCATCATTTGCATTCACACTTATGTGTGCATCATGATAAAGGCATT-T
1 CATTTGCATCACTTGCA-T----C---TGCAT-CA-CA-AAAAAAGACATTCA
* * * * * *
9062511 GATTAGTATCGCTTGCATCTGCAT-A-AAAAAGAGACGTTCA
1 CATTTGCATCACTTGCATCTGCATCACAAAAAAAGACATTCA
* *
9062551 TATTTGCATCACTTGCATCTGCATCACAAAAAAGGACATTCA
1 CATTTGCATCACTTGCATCTGCATCACAAAAAAAGACATTCA
* *
9062593 CATTTACATCATTTGCAT
1 CATTTGCATCACTTGCAT
9062611 TCGCACTTAT
Statistics
Matches: 142, Mismatches: 35, Indels: 31
0.68 0.17 0.15
Matches are distributed among these distances:
39 25 0.18
40 21 0.15
41 2 0.01
42 59 0.42
43 1 0.01
44 3 0.02
47 2 0.01
50 3 0.02
51 3 0.02
52 14 0.10
53 9 0.06
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (42 bp):
CATTTGCATCACTTGCATCTGCATCACAAAAAAAGACATTCA
Found at i:9062562 original size:134 final size:135
Alignment explanation
Indices: 9062376--9062877 Score: 572
Period size: 134 Copynumber: 3.8 Consensus size: 135
9062366 TACTTGCATC
*
9062376 TGCATTTGTATCACTTGCATCTACGTAAAAAA-AGACATTCATATTTGCATCACTTGCATCTGCA
1 TGCATTTGTATCACTTGCATCTACATAAAAAAGAGACATTCATATTTGCATCACTTGCATCTGCA
* * *
9062440 TCACAAAAAAAGACATTCACATTTGCATCATTTGCATTCACACTTATGTGTGCATCATGATAAAG
66 TCACAAAAAAAGACATTCACATTTGCATCATTTGCATTCACACTTATATATGCATCATGAGAAAG
*
9062505 GCATT
131 ACATT
* * * *
9062510 TG-ATTAGTATCGCTTGCATCTGCATAAAAAAGAGACGTTCATATTTGCATCACTTGCATCTGCA
1 TGCATTTGTATCACTTGCATCTACATAAAAAAGAGACATTCATATTTGCATCACTTGCATCTGCA
* * * *
9062574 TCACAAAAAAGGACATTCACATTTACATCATTTGCATTCGCACTTATCTATGCATCATGAGAAAG
66 TCACAAAAAAAGACATTCACATTTGCATCATTTGCATTCACACTTATATATGCATCATGAGAAAG
*
9062639 ATATT
131 ACATT
* * ** *
9062644 TGCATTTGTATCACTTGCATCTACAT--CAAAGAGATATTTGTATTTGCATCACTTGCATCTGTA
1 TGCATTTGTATCACTTGCATCTACATAAAAAAGAGACATTCATATTTGCATCACTTGCATCTGCA
* ** * * **
9062707 TTACAAAAAATAGACATTCGTATTTGCATCATTTACACTCACACTTATATATTTATCATGAGAAA
66 TCACAAAAAA-AGACATTCACATTTGCATCATTTGCATTCACACTTATATATGCATCATGAGAAA
*
9062772 AACATT
130 GACATT
** * * * * *
9062778 TGCATTTGTATTGCTTGCATCTGCAT--TAAAGAGATATTTGC-T-TTTGCATCACTTGTATCTA
1 TGCATTTGTATCACTTGCATCTACATAAAAAAGAGACA-TT-CATATTTGCATCACTTGCATCTG
* * * *
9062839 CATCATAACAAAA-ACATTCGCATTTGCATCATTGGCATT
64 CATCACAAAAAAAGACATTCACATTTGCATCATTTGCATT
9062878 TGCATCATGA
Statistics
Matches: 313, Mismatches: 50, Indels: 12
0.83 0.13 0.03
Matches are distributed among these distances:
132 22 0.07
133 66 0.21
134 202 0.65
135 23 0.07
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.35
Consensus pattern (135 bp):
TGCATTTGTATCACTTGCATCTACATAAAAAAGAGACATTCATATTTGCATCACTTGCATCTGCA
TCACAAAAAAAGACATTCACATTTGCATCATTTGCATTCACACTTATATATGCATCATGAGAAAG
ACATT
Found at i:9062724 original size:268 final size:266
Alignment explanation
Indices: 9062376--9062877 Score: 643
Period size: 268 Copynumber: 1.9 Consensus size: 266
9062366 TACTTGCATC
*
9062376 TGCATTTGTATCACTTGCATCTACGTAAAAAAAGACATTCATATTTGCATCACTTGCATCTGCAT
1 TGCATTTGTATCACTTGCATCTACATAAAAAAAGACATTCATATTTGCATCACTTGCATCTGCAT
* * * * * **
9062441 CACAAAAAAAGACATTCACATTTGCATCATTTGCATTCACACTTATGTGTGCATCATGATAAAGG
66 CACAAAAAAAGACATTCACATTTGCATCATTTACACTCACACTTATATATGCATCATGAGAAAAA
9062506 CATTTG-ATTAGTATCGCTTGCATCTGCATAAAAAAGAGACGTT-CATATTTGCATCACTTGCAT
131 CATTTGCATTAGTATCGCTTGCATCTGCATAAAAAAGAGA-GTTGC-T-TTTGCATCACTTGCAT
* *
9062569 CTGCATCACAA-AAAAGGACATTCACATTTACATCATTTGCATTCGCACTTATCTATGCATCATG
193 CTACATCACAACAAAA--ACATTCACATTTACATCATTGGCATTCGCACTTATCTATGCATCATG
9062633 AGAAAGATATT
256 AGAAAGATATT
* * * ** *
9062644 TGCATTTGTATCACTTGCATCTACAT-CAAAGAGATATTTGTATTTGCATCACTTGCATCTGTAT
1 TGCATTTGTATCACTTGCATCTACATAAAAAAAGACATTCATATTTGCATCACTTGCATCTGCAT
* ** **
9062708 TACAAAAAATAGACATTCGTATTTGCATCATTTACACTCACACTTATATATTTATCATGAGAAAA
66 CACAAAAAA-AGACATTCACATTTGCATCATTTACACTCACACTTATATATGCATCATGAGAAAA
* * * * * * *
9062773 ACATTTGCATTTGTATTGCTTGCATCTGCATTAAAGAGATATTTGCTTTTGCATCACTTGTATCT
130 ACATTTGCATTAGTATCGCTTGCATCTGCATAAAAAAGAGAGTTGCTTTTGCATCACTTGCATCT
* * *
9062838 ACATCATAACAAAAACATTCGCATTTGCATCATTGGCATT
195 ACATCACAACAAAAACATTCACATTTACATCATTGGCATT
9062878 TGCATCATGA
Statistics
Matches: 199, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
266 23 0.12
267 64 0.32
268 83 0.42
269 29 0.15
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.35
Consensus pattern (266 bp):
TGCATTTGTATCACTTGCATCTACATAAAAAAAGACATTCATATTTGCATCACTTGCATCTGCAT
CACAAAAAAAGACATTCACATTTGCATCATTTACACTCACACTTATATATGCATCATGAGAAAAA
CATTTGCATTAGTATCGCTTGCATCTGCATAAAAAAGAGAGTTGCTTTTGCATCACTTGCATCTA
CATCACAACAAAAACATTCACATTTACATCATTGGCATTCGCACTTATCTATGCATCATGAGAAA
GATATT
Found at i:9062876 original size:15 final size:15
Alignment explanation
Indices: 9062853--9062885 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
9062843 ATAACAAAAA
9062853 CATTCGCATTTGCAT
1 CATTCGCATTTGCAT
*
9062868 CATTGGCATTTGCAT
1 CATTCGCATTTGCAT
9062883 CAT
1 CAT
9062886 GAAAAAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (15 bp):
CATTCGCATTTGCAT
Found at i:9063001 original size:24 final size:24
Alignment explanation
Indices: 9062950--9063008 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
9062940 ATCACTTGCC
* **
9062950 TTTGCATTTATATAAAACATTTGTA
1 TTTGCA-TCATATAAAACATTTACA
*
9062975 TTTGTATCATATAAAACATTTACA
1 TTTGCATCATATAAAACATTTACA
9062999 TTTGCATCAT
1 TTTGCATCAT
9063009 GGTATTTGCA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 24 0.83
25 5 0.17
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.46
Consensus pattern (24 bp):
TTTGCATCATATAAAACATTTACA
Found at i:9063143 original size:18 final size:18
Alignment explanation
Indices: 9063117--9063157 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
9063107 TGCATTCTTA
*
9063117 CATTTGCATTGATATTTG
1 CATTCGCATTGATATTTG
9063135 CATTCGCATTGATATTTG
1 CATTCGCATTGATATTTG
*
9063153 TATTC
1 CATTC
9063158 ACATCATTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.22, C:0.15, G:0.15, T:0.49
Consensus pattern (18 bp):
CATTCGCATTGATATTTG
Found at i:9063553 original size:45 final size:45
Alignment explanation
Indices: 9063504--9063609 Score: 149
Period size: 45 Copynumber: 2.4 Consensus size: 45
9063494 TATTAAGCCC
* *
9063504 AGATTAGTTGGGACGTCAGCCCAGATTAGCTAGCCCATAGGCACA
1 AGATTAGTTGGCACATCAGCCCAGATTAGCTAGCCCATAGGCACA
* * * *
9063549 AGATTAGTTGGCATATGAGCCCAGATTAGTTGGCCCATAGGCACA
1 AGATTAGTTGGCACATCAGCCCAGATTAGCTAGCCCATAGGCACA
*
9063594 AGATTAGCTGGCACAT
1 AGATTAGTTGGCACAT
9063610 AAACTCATAT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (45 bp):
AGATTAGTTGGCACATCAGCCCAGATTAGCTAGCCCATAGGCACA
Found at i:9063577 original size:22 final size:22
Alignment explanation
Indices: 9063407--9063582 Score: 68
Period size: 22 Copynumber: 7.9 Consensus size: 22
9063397 AAGAATAAAC
* * * *
9063407 ATGAGCCCTGATTAGCTAGCAC
1 ATGAGCCCAGATTAGTTGGCAT
* * * *
9063429 ATAAGCCCAAATTAGTTGTCAC
1 ATGAGCCCAGATTAGTTGGCAT
* * * *
9063451 ATGAACCTAAATTAGTTGACAT
1 ATGAGCCCAGATTAGTTGGCAT
** * * **
9063473 AAAAGCTCAGTTTAACTGGCAT
1 ATGAGCCCAGATTAGTTGGCAT
* * *
9063495 ATTAAGCCCAGATTAGTTGGGAC
1 A-TGAGCCCAGATTAGTTGGCAT
* * * *
9063518 GTCAGCCCAGATTAGCTAGCCCAT
1 ATGAGCCCAGATTAG-TTG-GCAT
*
9063542 A-G-GCACAAGATTAGTTGGCAT
1 ATGAGC-CCAGATTAGTTGGCAT
9063563 ATGAGCCCAGATTAGTTGGC
1 ATGAGCCCAGATTAGTTGGC
9063583 CCATAGGCAC
Statistics
Matches: 108, Mismatches: 40, Indels: 12
0.68 0.25 0.08
Matches are distributed among these distances:
21 4 0.04
22 77 0.71
23 26 0.24
24 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (22 bp):
ATGAGCCCAGATTAGTTGGCAT
Found at i:9063605 original size:23 final size:23
Alignment explanation
Indices: 9063526--9063610 Score: 86
Period size: 23 Copynumber: 3.7 Consensus size: 23
9063516 ACGTCAGCCC
*
9063526 AGATTAGCTAGCCCATAGGCACA
1 AGATTAGCTGGCCCATAGGCACA
* *
9063549 AGATTAGTTGG--CATATGAGC-CC
1 AGATTAGCTGGCCCATA-G-GCACA
*
9063571 AGATTAGTTGGCCCATAGGCACA
1 AGATTAGCTGGCCCATAGGCACA
*
9063594 AGATTAGCTGGCACATA
1 AGATTAGCTGGCCCATA
9063611 AACTCATATT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
21 4 0.08
22 15 0.29
23 28 0.55
24 4 0.08
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (23 bp):
AGATTAGCTGGCCCATAGGCACA
Found at i:9063834 original size:35 final size:35
Alignment explanation
Indices: 9063631--9065727 Score: 714
Period size: 35 Copynumber: 58.5 Consensus size: 35
9063621 AATGGTCATA
* * * *
9063631 TTTATTTCTTAACTTGGGGTGTCGT-TCTGATCATTA
1 TTTATTT-TTGACTTGTGGTGTCATCTC-GATCATTC
* ** * *
9063667 TTCATTTTTTGACTTGTGGTGTTGTCTTGATCATTA
1 TTTA-TTTTTGACTTGTGGTGTCATCTCGATCATTC
* ** * ** *
9063703 TTTATTCTTGACTTACGGTGTCATC-CTAGTTGTCC
1 TTTATTTTTGACTTGTGGTGTCATCTCGA-TCATTC
* * *
9063738 ATTATTTTTTGACTTGTGGTGTCAT-TCTGGTCATTT
1 TTTA-TTTTTGACTTGTGGTGTCATCTC-GATCATTC
* * *
9063774 TGTTATTTTTTGACATATGGTGTCATCTCGACCATTC
1 T-TTA-TTTTTGACTTGTGGTGTCATCTCGATCATTC
* * *
9063811 TTTATTTTTGACTTGTGGCGTCATCTCGAT-GTCC
1 TTTATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * * * *
9063845 ATTATTTTTCAACTTATGGTGTCATCCCGAACATGT-
1 TTTATTTTT-GACTTGTGGTGTCATCTCGATCAT-TC
* *
9063881 TGTTATTTTCTGACTTGTGGTGTTATCTCGATCATTT
1 T-TTATTTT-TGACTTGTGGTGTCATCTCGATCATTC
* ** *
9063918 TTTATTTTTTGACTTGTGGTGTCATCTCGGTTGTTT
1 TTTA-TTTTTGACTTGTGGTGTCATCTCGATCATTC
* * * * *
9063954 TGTTATTTTCTGACTTTTGGTGTCGTCCCAATCATTTTT
1 T-TTATTTT-TGACTTGTGGTGTCATCTCGATCA--TTC
* *
9063993 TTTATTTCATT-ACTTATGGTGTCATCTCGATC-GTC
1 TTTATTT--TTGACTTGTGGTGTCATCTCGATCATTC
* *
9064028 TGTTATTTTCTGACTTGT-GT-T-ATTTCGGTCATTC
1 T-TTATTTT-TGACTTGTGGTGTCATCTCGATCATTC
* * * *
9064062 TTTATTTTTGACTTATGGTGTCATCCCAATCATCC
1 TTTATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * * *
9064097 ATTATTTTTTACTTGTGGTGTCATATTGATCATT-
1 TTTATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * * *
9064131 TGTTATTTTTGACTTATGGTCTCGTCTCGATCATTTTTTT
1 T-TTATTTTTGACTTGTGGTGTCATCTCGATCA----TTC
* ** *
9064171 TTTATTTTTGACTTGTAGTGTTGTCTCGATCATTT
1 TTTATTTTTGACTTGTGGTGTCATCTCGATCATTC
*
9064206 TTTATTTTTGACTTGTGATGTCATCTCGATCA-TC
1 TTTATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * *
9064240 TATTATTTTCTAACTTATGGTGTCAT-TCTAGTCATGT-
1 T-TTATTTT-TGACTTGTGGTGTCATCTCGA-TCAT-TC
* * * **
9064277 TGTTATTTTTTGACTTATAGTGTCATCTTGGCCATTC
1 T-TTA-TTTTTGACTTGTGGTGTCATCTCGATCATTC
** * * *
9064314 TTTATTTTCAACTTGTGATGCCATCTCGATCGTTC
1 TTTATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * * *
9064349 ATTATTTTTAACTTGTGGTGTCATCCCAATCATTC
1 TTTATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * *
9064384 TTTATTTTTGACTTATGGTGTCATCAT-GGTCATCC
1 TTTATTTTTGACTTGTGGTGTCATC-TCGATCATTC
* * * * * *
9064419 ATTATTTTCTGACTTATGGTGTCGTCTCAATCGTCC
1 TTTATTTT-TGACTTGTGGTGTCATCTCGATCATTC
* * * *
9064455 GTTATTTTTTGACTTGT-G-G---TCTCGGTCGTCC
1 TTTA-TTTTTGACTTGTGGTGTCATCTCGATCATTC
* * * * ** *
9064486 ATTATTTTTTGACTTATGGTGTCATCTTGGTTGTTT
1 TTTA-TTTTTGACTTGTGGTGTCATCTCGATCATTC
* * * * * *
9064522 TCTTATGTTTTGACCTGTGGTATCTTC-CTAGTCGTAC
1 T-TTAT-TTTTGACTTGTGGTGTCATCTCGA-TCATTC
* * ** *
9064559 GTTATTTTTTAACTTGTGGTGTTGTTTCGATCATT-
1 TTTA-TTTTTGACTTGTGGTGTCATCTCGATCATTC
* **
9064594 TATTATTTTTTGACTTGTGGTATTGTCTCGATCATTC
1 T-TTA-TTTTTGACTTGTGGTGTCATCTCGATCATTC
* * **
9064631 TTTATTTTTGCCTTGTGGTGTCATCCCG-TTGTT-
1 TTTATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * * * *
9064664 TGATATTTTTGACTTATGGTGTCATCCCAATAATTC
1 T-TTATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * * * * *
9064700 CTTATTCTCGACTAGTGATGTCATCTCGATCATCC
1 TTTATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * * * * * * *
9064735 ATCATTTTCTAACGTGTGATGTCATCCCAATCATTT
1 TTTATTTT-TGACTTGTGGTGTCATCTCGATCATTC
* * * * * *
9064771 TCTTATGTTTTCAACTTATGATGTCATCCCAATCATCC
1 T-TTAT-TTTT-GACTTGTGGTGTCATCTCGATCATTC
* * * *
9064809 ATTATTTTTTTGACTTCTGGTGTCATC-CCAGTCGTT-
1 -TT-TATTTTTGACTTGTGGTGTCATCTCGA-TCATTC
** * *
9064845 TGTTATTTTTTGACTTGTGGTGTTGTC-CCAGTCATTT
1 T-TTA-TTTTTGACTTGTGGTGTCATCTCGA-TCATTC
* * *
9064882 TTTATTTTTGGCTTGTGGTGTCTTC-CTAGTCA-TC
1 TTTATTTTTGACTTGTGGTGTCATCTCGA-TCATTC
* ** *
9064916 TGTTATCTTTTTGACTTGTAGTGTTGT-TCCGATCGTT-
1 T-TTA--TTTTTGACTTGTGGTGTCATCT-CGATCATTC
* * *
9064953 TTTATTTTTGACTTATGGTGTCATCTTGATCATTT
1 TTTATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * *
9064988 TCTTATGTTTTGACTTGTGGTGTCATC-CTAGTCGTCC
1 T-TTAT-TTTTGACTTGTGGTGTCATCTCGA-TCATTC
* * *
9065025 ATTATTTTTTGACTTGTGATGTCAT-TCCGATCATTT
1 TTTA-TTTTTGACTTGTGGTGTCATCT-CGATCATTC
* * ** * * *
9065061 TCTTATGTTTTGACCTATGGTGTTGTC-CCAGTCGTCC
1 T-TTAT-TTTTGACTTGTGGTGTCATCTCGA-TCATTC
* * *
9065098 ATTATTTTTTGACTTGTGATGTCATCCCGATCATTC
1 TTTA-TTTTTGACTTGTGGTGTCATCTCGATCATTC
* * * ** *
9065134 CTTATTTTTGGCTTGTAGTGTTGTCTCGATCA-CC
1 TTTATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * *
9065168 TGTTATTTTTTAACTTGTGGTGTCATC-CCAGTCATTT
1 T-TTA-TTTTTGACTTGTGGTGTCATCTCGA-TCATTC
** * *
9065205 TTTATTTTTGGGTTATGGTGTCATC-CCAGT--TGTC
1 TTTATTTTTGACTTGTGGTGTCATCTCGA-TCAT-TC
* *
9065239 TGATATTTTTGACTTGTGGTGTCATCCCGATCATTC
1 T-TTATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * ** * * *
9065275 CTTATTCTTGACTTGTGGTGTTGTC-CCAGTTATCC
1 TTTATTTTTGACTTGTGGTGTCATCTCGA-TCATTC
* * * * *
9065310 ATTATTTTTCGACTTGTGATG-CTGTCTC-AGTCGTTT
1 TTTATTTTT-GACTTGTGGTGTC-ATCTCGA-TCATTC
* * * *
9065346 TCTTATGTTTTGACTTATGGTGTCATCTTGGTCATTT
1 T-TTAT-TTTTGACTTGTGGTGTCATCTCGATCATTC
* **
9065383 TCTTATTTTTTGACTTGTGGTGTCATTTC-AGTTGTTC
1 T-TTA-TTTTTGACTTGTGGTGTCATCTCGA-TCATTC
* *
9065420 GTTGT-TTTTTGACTTGTGGTGTCATCTTGGTCATTC
1 -TT-TATTTTTGACTTGTGGTGTCATCTCGATCATTC
* * * ** *
9065456 GTTATTTTCTAACTTATGGTGTTGTCCCGATCGTATTC
1 TTTATTTT-TGACTTGTGGTGTCATCTCGATC--ATTC
* * * * *
9065494 -TTATTTTTTGACCTATGGTGTCATCCCGGTCATTT
1 TTTA-TTTTTGACTTGTGGTGTCATCTCGATCATTC
* * ** * *
9065529 TCTTATTTCATGACTTGTGATGTTGTC-CCAGTCATCC
1 T-TTATTT-TTGACTTGTGGTGTCATCTCGA-TCATTC
* * ** * * *
9065566 ATTCTTTTCCAACTTATGGTGTCATC-CCATC-GTC
1 TTTATTTT-TGACTTGTGGTGTCATCTCGATCATTC
* *
9065600 TGTTATTTTCTAACTTGTGGTGTCATCTCGGTCATT-
1 T-TTATTTT-TGACTTGTGGTGTCATCTCGATCATTC
* * * *
9065636 TCTTATTTCCTGACTTATGGTGTCATC-CCATTCATTT
1 T-TTATTT-TTGACTTGTGGTGTCATCTCGA-TCATTC
* * * * *
9065673 TGTTATTTTCTGACTTATGGTGTTATCCCAATCATCC
1 T-TTATTTT-TGACTTGTGGTGTCATCTCGATCATTC
9065710 TTGT-TTTTTGACTTGTGG
1 TT-TATTTTTGACTTGTGG
9065728 CATTGTCCTG
Statistics
Matches: 1532, Mismatches: 397, Indels: 265
0.70 0.18 0.12
Matches are distributed among these distances:
31 25 0.02
32 8 0.01
33 19 0.01
34 77 0.05
35 474 0.31
36 462 0.30
37 345 0.23
38 83 0.05
39 37 0.02
40 2 0.00
ACGTcount: A:0.15, C:0.18, G:0.17, T:0.50
Consensus pattern (35 bp):
TTTATTTTTGACTTGTGGTGTCATCTCGATCATTC
Found at i:9063844 original size:107 final size:107
Alignment explanation
Indices: 9063632--9063946 Score: 353
Period size: 107 Copynumber: 2.9 Consensus size: 107
9063622 ATGGTCATAT
* * * * * * *
9063632 TTATTTCTTAACTTGGGGTGTCGTTCTGATCATTAT-TCATTTTTTGACTTGTGGTGTTGTCTTG
1 TTATTTTTTAACTTGTGGTGTCATTCTGATCATTTTGTTATTTTTTGACTTGTGGTGTTATCTCG
* ** * *
9063696 ATCATTATTTATTCTTGACTTACGGTGTCATCCTAGTTGTCCA
66 ATCATTATTTATTTTTGACTTGTGGTGTCAT-CTCGATGTCCA
* * * * *
9063739 TTATTTTTTGACTTGTGGTGTCATTCTGGTCATTTTGTTATTTTTTGACATATGGTGTCATCTCG
1 TTATTTTTTAACTTGTGGTGTCATTCTGATCATTTTGTTATTTTTTGACTTGTGGTGTTATCTCG
* * *
9063804 ACCATTCTTTATTTTTGACTTGTGGCGTCATCTCGATGTCCA
66 ATCATTATTTATTTTTGACTTGTGGTGTCATCTCGATGTCCA
* * * * * * *
9063846 TTATTTTTCAACTTATGGTGTCATCCCGAACATGTTGTTATTTTCTGACTTGTGGTGTTATCTCG
1 TTATTTTTTAACTTGTGGTGTCATTCTGATCATTTTGTTATTTTTTGACTTGTGGTGTTATCTCG
*
9063911 ATCATTTTTTATTTTTTGACTTGTGGTGTCATCTCG
66 ATCATTATTTA-TTTTTGACTTGTGGTGTCATCTCG
9063947 GTTGTTTTGT
Statistics
Matches: 171, Mismatches: 35, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
107 101 0.59
108 70 0.41
ACGTcount: A:0.16, C:0.16, G:0.18, T:0.50
Consensus pattern (107 bp):
TTATTTTTTAACTTGTGGTGTCATTCTGATCATTTTGTTATTTTTTGACTTGTGGTGTTATCTCG
ATCATTATTTATTTTTGACTTGTGGTGTCATCTCGATGTCCA
Found at i:9064197 original size:39 final size:40
Alignment explanation
Indices: 9064133--9064213 Score: 119
Period size: 39 Copynumber: 2.0 Consensus size: 40
9064123 TGATCATTTG
*
9064133 TTATTTTTGACTTATGGTCTCGTCTCGATCATTTTTT-TT
1 TTATTTTTGACTTATAGTCTCGTCTCGATCATTTTTTATT
* * *
9064172 TTATTTTTGACTTGTAGTGTTGTCTCGATCATTTTTTATT
1 TTATTTTTGACTTATAGTCTCGTCTCGATCATTTTTTATT
9064212 TT
1 TT
9064214 TGACTTGTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 33 0.89
40 4 0.11
ACGTcount: A:0.14, C:0.12, G:0.14, T:0.60
Consensus pattern (40 bp):
TTATTTTTGACTTATAGTCTCGTCTCGATCATTTTTTATT
Found at i:9064768 original size:36 final size:36
Alignment explanation
Indices: 9064714--9064817 Score: 104
Period size: 38 Copynumber: 2.8 Consensus size: 36
9064704 TTCTCGACTA
* * *
9064714 GTGATGTCATCTCGATCATCCATCA-TTTTCTAACGT
1 GTGATGTCATCCCAATCATCCATTATTTTTC-AACGT
* *
9064750 GTGATGTCATCCCAATCATTTTC-TTATGTTTTCAACTT
1 GTGATGTCATCCCAATCA--TCCATTAT-TTTTCAACGT
*
9064788 ATGATGTCATCCCAATCATCCATTATTTTT
1 GTGATGTCATCCCAATCATCCATTATTTTT
9064818 TTGACTTCTG
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
36 22 0.39
37 6 0.11
38 23 0.41
39 5 0.09
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (36 bp):
GTGATGTCATCCCAATCATCCATTATTTTTCAACGT
Found at i:9064866 original size:36 final size:36
Alignment explanation
Indices: 9063739--9065727 Score: 559
Period size: 36 Copynumber: 55.5 Consensus size: 36
9063729 TAGTTGTCCA
* **
9063739 TTATTTTTTGACTTGTGGTGTCATTCTGGTCATTTTG
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCA-TTTG
* * * *
9063776 TTATTTTTTGACATATGGTGTCATCTC-GACCATTCT-
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATT-TG
* *
9063812 TTA-TTTTTGACTTGTGGCGTCATCTCGATGTCCA----
1 TTATTTTTTGACTTGTGGTGTCATC-CCA-GT-CATTTG
** * *
9063846 TTATTTTTCAACTTATGGTGTCATCCC-GAACATGTTG
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCAT-TTG
* * * *
9063883 TTATTTTCTGACTTGTGGTGTTATCTC-GATCATTTT
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* * **
9063919 TTATTTTTTGACTTGTGGTGTCATCTCGGTTGTTTTG
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* * * *
9063956 TTATTTTCTGACTTTTGGTGTCGTCCCAATCATTT-
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* * * * * *
9063991 TTTTTATTTCATTACTTATGGTGTCATCTC-GATCGTCTG
1 TTATT-TTT--TGACTTGTGGTGTCATCCCAG-TCATTTG
* ** *
9064030 TTATTTTCTGACTTGT-GT-T-ATTTCGGTCATTCT-
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATT-TG
* * ***
9064063 TTA-TTTTTGACTTATGGTGTCATCCCAATCATCCA
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
***
9064098 TTATTTTTT-ACTTGTGGTGTCAT-ATTGATCATTTG
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* * * * *
9064133 TTA-TTTTTGACTTATGGTCTCGTCTC-GATCATTTTTT
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCA--TTTG
* * ** * *
9064170 TTTTATTTTTGACTTGTAGTGTTGTCTC-GATCATTTT
1 TTAT-TTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* * * *
9064207 TTA-TTTTTGACTTGTGATGTCATCTC-GATCATCTA
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* * * * *
9064242 TTATTTTCTAACTTATGGTGTCATTCTAGTCATGTTG
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCAT-TTG
* * *** *
9064279 TTATTTTTTGACTTATAGTGTCATCTTGGCCATTCT-
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATT-TG
** * * * * **
9064315 TTA-TTTTCAACTTGTGATGCCATCTC-GATCGTTCA
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* *
9064350 TTA-TTTTTAACTTGTGGTGTCATCCCAATCATTCT-
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATT-TG
* *** ***
9064385 TTA-TTTTTGACTTATGGTGTCATCATGGTCATCCA
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* * * * * * **
9064420 TTATTTTCTGACTTATGGTGTCGTCTCAATCGTCCG
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* * ***
9064456 TTATTTTTTGACTTGT-G-GTC-T--CGGTCGTCCA
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* *** ** *
9064487 TTATTTTTTGACTTATGGTGTCATCTTGGTTGTTTTC
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* * * * * * **
9064524 TTATGTTTTGACCTGTGGTATCTTCCTAGTCGTACG
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* ** ** *
9064560 TTATTTTTTAACTTGTGGTGTTGTTTC-GATCATTTA
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* ** *
9064596 TTATTTTTTGACTTGTGGTATTGTCTC-GATCATTCT-
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATT-TG
* **
9064632 TTA-TTTTTGCCTTGTGGTGTCATCCC-GTTGTTTG
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* * * * **
9064666 ATA-TTTTTGACTTATGGTGTCATCCCAATAATTCC
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* * * * * ***
9064701 TTA-TTCTCGACTAGTGATGTCATCTC-GATCATCCA
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* * * * * * *
9064736 TCATTTTCTAACGTGTGATGTCATCCCAATCATTTTC
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCA-TTTG
** * * * ***
9064773 TTATGTTTTCAACTTATGATGTCATCCCAATCATCCA
1 TTAT-TTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* *
9064810 TTATTTTTTTGACTTCTGGTGTCATCCCAGTCGTTTG
1 TTA-TTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
** *
9064847 TTATTTTTTGACTTGTGGTGTTGTCCCAGTCATTTT
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* * * *
9064883 TTA-TTTTTGGCTTGTGGTGTCTTCCTAGTCATCTG
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* ** * *
9064918 TTATCTTTTTGACTTGTAGTGTTGTTCC-GATCGTTT-
1 TTAT-TTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* ** *
9064954 TTA-TTTTTGACTTATGGTGTCAT-CTTGATCATTTTC
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCA-TTTG
* * * ***
9064990 TTATGTTTTGACTTGTGGTGTCATCCTAGTCGTCCA
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* * *
9065026 TTATTTTTTGACTTGTGATGTCATTCC-GATCATTTTC
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCA-TTTG
* * * ** * ***
9065063 TTATGTTTTGACCTATGGTGTTGTCCCAGTCGTCCA
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* **
9065099 TTATTTTTTGACTTGTGATGTCATCCC-GATCATTCC
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* * ** * **
9065135 TTA-TTTTTGGCTTGTAGTGTTGTCTC-GATCACCTG
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* *
9065170 TTATTTTTTAACTTGTGGTGTCATCCCAGTCATTTT
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
** * ** *
9065206 TTA-TTTTTGGGTTATGGTGTCATCCCAGTTGTCTG
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* **
9065241 ATA-TTTTTGACTTGTGGTGTCATCCC-GATCATTCC
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCATTTG
* ** * ***
9065276 TTA-TTCTTGACTTGTGGTGTTGTCCCAGTTATCCA
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* * * * * *
9065311 TTATTTTTCGACTTGTGATG-CTGTCTCAGTCGTTTTC
1 TTATTTTTTGACTTGTGGTGTC-ATCCCAGTC-ATTTG
* * *** *
9065348 TTATGTTTTGACTTATGGTGTCATCTTGGTCATTTTC
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCA-TTTG
** ** *
9065385 TTATTTTTTGACTTGTGGTGTCATTTCAGTTGTTCG
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* *** *
9065421 TTGTTTTTTGACTTGTGGTGTCATCTTGGTCATTCG
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* * * ** * *
9065457 TTATTTTCTAACTTATGGTGTTGTCCC-GATCGTATTC
1 TTATTTTTTGACTTGTGGTGTCATCCCAG-TCAT-TTG
* * * *
9065494 TTATTTTTTGACCTATGGTGTCATCCCGGTCATTTTC
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCA-TTTG
** * ** ***
9065531 TTATTTCATGACTTGTGATGTTGTCCCAGTCATCCA
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* *** * * *
9065567 TTCTTTTCCAACTTATGGTGTCATCCCA-TCGTCTG
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
* * * * *
9065602 TTATTTTCTAACTTGTGGTGTCATCTCGGTCATTTC
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
** * *
9065638 TTATTTCCTGACTTATGGTGTCATCCCATTCATTTTG
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCA-TTTG
* * * * **
9065675 TTATTTTCTGACTTATGGTGTTATCCCAATCA-TCC
1 TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
*
9065710 TTGTTTTTTGACTTGTGG
1 TTATTTTTTGACTTGTGG
9065728 CATTGTCCTG
Statistics
Matches: 1433, Mismatches: 433, Indels: 174
0.70 0.21 0.09
Matches are distributed among these distances:
31 22 0.02
32 14 0.01
33 18 0.01
34 65 0.05
35 419 0.29
36 432 0.30
37 379 0.26
38 56 0.04
39 28 0.02
ACGTcount: A:0.15, C:0.18, G:0.17, T:0.50
Consensus pattern (36 bp):
TTATTTTTTGACTTGTGGTGTCATCCCAGTCATTTG
Found at i:9064903 original size:71 final size:72
Alignment explanation
Indices: 9064560--9065727 Score: 429
Period size: 71 Copynumber: 16.2 Consensus size: 72
9064550 TAGTCGTACG
* ** * * ** *
9064560 TTATTTTTTAACTTGTGGTGTTGTTTC-GATCATTTATTATTTTTTGACTTGTGGTATTGTCTC-
1 TTATTTTTTGACTTGTGGTGTTGTCCCAG-TCATCTATTATTTTTTGACTTGTGGTGTCATCCCA
9064623 GATCA-TTC
65 G-TCATTTC
* ** * *
9064631 TT-TATTTTTGCCTTGTGGTGTCATCCC-GT--TGT-TTGATATTTTTGACTTATGGTGTCATCC
1 TTAT-TTTTTGACTTGTGGTGTTGTCCCAGTCATCTATT-AT-TTTTTGACTTGTGGTGTCATCC
* * *
9064691 CAATAATTCC
63 CAGTCATTTC
* * * * ** * * * * * * *
9064701 TTA-TTCTCGACTAGTGATGTCATCTC-GATCATCCATCATTTTCTAACGTGTGATGTCATCCCA
1 TTATTTTTTGACTTGTGGTGTTGTCCCAG-TCATCTATTATTTTTTGACTTGTGGTGTCATCCCA
*
9064764 ATCATTTTC
65 GTCA-TTTC
** * * ** * * *
9064773 TTATGTTTTCAACTTATGATGTCATCCCAATCATCCATTATTTTTTTGACTTCTGGTGTCATCCC
1 TTAT-TTTTTGACTTGTGGTGTTGTCCCAGTCATCTATTA-TTTTTTGACTTGTGGTGTCATCCC
* *
9064838 AGTCGTTTG
64 AGTCATTTC
* * * * *
9064847 TTATTTTTTGACTTGTGGTGTTGTCCCAGTCATTTTTTA-TTTTTGGCTTGTGGTGTCTTCCTAG
1 TTATTTTTTGACTTGTGGTGTTGTCCCAGTCATCTATTATTTTTTGACTTGTGGTGTCATCCCAG
* *
9064911 TCATCTG
66 TCATTTC
* * * * * *
9064918 TTATCTTTTTGACTTGTAGTGTTGTTCC-GATCGT-TTTTA-TTTTTGACTTATGGTGTCAT-CT
1 TTAT-TTTTTGACTTGTGGTGTTGTCCCAG-TCATCTATTATTTTTTGACTTGTGGTGTCATCCC
*
9064979 TGATCATTTTC
64 AG-TCA-TTTC
* ** * * * * *
9064990 TTATGTTTTGACTTGTGGTGTCATCCTAGTCGTCCATTATTTTTTGACTTGTGATGTCATTCC-G
1 TTATTTTTTGACTTGTGGTGTTGTCCCAGTCATCTATTATTTTTTGACTTGTGGTGTCATCCCAG
9065054 ATCATTTTC
66 -TCA-TTTC
* * * * * *
9065063 TTATGTTTTGACCTATGGTGTTGTCCCAGTCGTCCATTATTTTTTGACTTGTGATGTCATCCC-G
1 TTATTTTTTGACTTGTGGTGTTGTCCCAGTCATCTATTATTTTTTGACTTGTGGTGTCATCCCAG
*
9065127 ATCATTCC
66 -TCATTTC
* * * * * *
9065135 TTA-TTTTTGGCTTGTAGTGTTGTCTC-GATCACCTGTTATTTTTTAACTTGTGGTGTCATCCCA
1 TTATTTTTTGACTTGTGGTGTTGTCCCAG-TCATCTATTATTTTTTGACTTGTGGTGTCATCCCA
*
9065198 GTCATTTT
65 GTCATTTC
** * ** **
9065206 TTA-TTTTTGGGTTATGGTGTCATCCCAGTTGTCTGA-TA-TTTTTGACTTGTGGTGTCATCCC-
1 TTATTTTTTGACTTGTGGTGTTGTCCCAGTCATCT-ATTATTTTTTGACTTGTGGTGTCATCCCA
*
9065267 GATCATTCC
65 G-TCATTTC
* * * * * * *
9065276 TTA-TTCTTGACTTGTGGTGTTGTCCCAGTTATCCATTATTTTTCGACTTGTGATG-CTGTCTCA
1 TTATTTTTTGACTTGTGGTGTTGTCCCAGTCATCTATTATTTTTTGACTTGTGGTGTC-ATCCCA
*
9065339 GTCGTTTTC
65 GTC-ATTTC
* * ** *** * * **
9065348 TTATGTTTTGACTTATGGTGTCATCTTGGTCATTTTCTTATTTTTTGACTTGTGGTGTCATTTCA
1 TTATTTTTTGACTTGTGGTGTTGTCCCAGTCA-TCTATTATTTTTTGACTTGTGGTGTCATCCCA
9065413 GT--TGTTC
65 GTCAT-TTC
* ** *** * * * * **
9065420 GTTGTTTTTTGACTTGTGGTGTCATCTTGGTCAT-TCGTTATTTTCTAACTTATGGTGTTGTCCC
1 -TTATTTTTTGACTTGTGGTGTTGTCCCAGTCATCT-ATTATTTTTTGACTTGTGGTGTCATCCC
*
9065484 -GATCGTATTC
64 AG-TCAT-TTC
* * ** * * * ** * **
9065494 TTATTTTTTGACCTATGGTGTCATCCCGGTCATTTTCTTATTTCATGACTTGTGATGTTGTCCCA
1 TTATTTTTTGACTTGTGGTGTTGTCCCAGTCA-TCTATTATTTTTTGACTTGTGGTGTCATCCCA
*
9065559 GTCA-TCC
65 GTCATTTC
* *** * ** * * * * * *
9065566 ATTCTTTTCCAACTTATGGTGTCATCCCA-TCGTCTGTTATTTTCTAACTTGTGGTGTCATCTCG
1 -TTATTTTTTGACTTGTGGTGTTGTCCCAGTCATCTATTATTTTTTGACTTGTGGTGTCATCCCA
9065630 GTCATTTC
65 GTCATTTC
** * ** * * * * * *
9065638 TTATTTCCTGACTTATGGTGTCATCCCATTCATTTTGTTATTTTCTGACTTATGGTGTTATCCCA
1 TTATTTTTTGACTTGTGGTGTTGTCCCAGTCA-TCTATTATTTTTTGACTTGTGGTGTCATCCCA
* *
9065703 ATCA-TCC
65 GTCATTTC
*
9065710 TTGTTTTTTGACTTGTGG
1 TTATTTTTTGACTTGTGG
9065728 CATTGTCCTG
Statistics
Matches: 842, Mismatches: 206, Indels: 97
0.74 0.18 0.08
Matches are distributed among these distances:
67 2 0.00
68 4 0.00
69 40 0.05
70 67 0.08
71 266 0.32
72 107 0.13
73 242 0.29
74 89 0.11
75 25 0.03
ACGTcount: A:0.15, C:0.18, G:0.18, T:0.49
Consensus pattern (72 bp):
TTATTTTTTGACTTGTGGTGTTGTCCCAGTCATCTATTATTTTTTGACTTGTGGTGTCATCCCAG
TCATTTC
Found at i:9065832 original size:13 final size:13
Alignment explanation
Indices: 9065769--9065833 Score: 60
Period size: 13 Copynumber: 4.9 Consensus size: 13
9065759 TGTGATGTTG
* *
9065769 CAAAAAGAAGAGA
1 CAAAAAGAAAAAA
*
9065782 GAAAAA-AATAAAA
1 CAAAAAGAA-AAAA
*
9065795 CAAAAATAAACAAA
1 CAAAAAGAAA-AAA
*
9065809 CAAAAACAAAAAA
1 CAAAAAGAAAAAA
9065822 CAAAAAGAAAAA
1 CAAAAAGAAAAA
9065834 GCAAGGGTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
12 2 0.05
13 27 0.63
14 14 0.33
ACGTcount: A:0.80, C:0.09, G:0.08, T:0.03
Consensus pattern (13 bp):
CAAAAAGAAAAAA
Found at i:9066552 original size:114 final size:112
Alignment explanation
Indices: 9066338--9066553 Score: 281
Period size: 114 Copynumber: 1.9 Consensus size: 112
9066328 TGTTATAATG
* *
9066338 TTTTAGTGCACTTAAAATCACTGCAGTACCTTAAAAAATAAAATTACCAAAATACCCTTATAAAA
1 TTTTAGTGCACTTAAAATCACTACAGTACCCTAAAAAATAAAATTACCAAAATACCCTTATAAAA
* *
9066403 GTATTTTTATAATTTGACTTTCTTGAGCTCGAAATTTTATGCATGAT
66 GTATTTTCATAATTTGACTTTCTTGAGCTCAAAATTTTATGCATGAT
* * ** * *
9066450 TTTTGGTGCACTTAAAATCACTATAGTACCCTAGGAAGGATAAAATTACCAAAATACCTTTATAG
1 TTTTAGTGCACTTAAAATCACTACAGTACCCTA--AAAAATAAAATTACCAAAATACCCTTATAA
** *
9066515 GGGTATTTTCATAATTTGACTTT-TTCGAGTTCAAAATTT
64 AAGTATTTTCATAATTTGACTTTCTT-GAGCTCAAAATTT
9066554 CATGAAACTT
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
112 29 0.33
113 2 0.02
114 57 0.65
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.38
Consensus pattern (112 bp):
TTTTAGTGCACTTAAAATCACTACAGTACCCTAAAAAATAAAATTACCAAAATACCCTTATAAAA
GTATTTTCATAATTTGACTTTCTTGAGCTCAAAATTTTATGCATGAT
Found at i:9066622 original size:144 final size:145
Alignment explanation
Indices: 9066444--9066745 Score: 382
Period size: 144 Copynumber: 2.1 Consensus size: 145
9066434 AAATTTTATG
9066444 CATGATTTTTGGTGCACTTAAAATCACTATAGTA-CCCTAGGAAG-GATAAAATTACCAAAATA-
1 CATGATTTTTGGTGCACTTAAAATCACTATAGTACCCCTA-GAAGTG-TAAAATTACCAAAATAT
* ** * ** *
9066506 CCTTTATAGGGGTATTTTCATAATTTGA-CTTTTTCGAGTTCAAAATTTCATGAAACTTTTCA-A
64 CC-TTATAGAGGTATTTTCATAATTTGATCTTCCT-GAGCTCAAAATTTCACAAAAATTTTCAGA
*
9066569 TATTAATTTCATAATATTT
127 TATCAATTTCATAATATTT
* * *
9066588 CATGATTTTTGGTGCATTTGAAATCA-TAGTAGTACCCCTAGAAGTGTGAAATTACCAAAATATC
1 CATGATTTTTGGTGCACTTAAAATCACTA-TAGTACCCCTAGAAGTGTAAAATTACCAAAATATC
* * *
9066652 CTTATAGAGGTATTTTCGTAATTTGATCTTCCTGAGCTCGAAATTTCACAAAAATTTTCAGATCT
65 CTTATAGAGGTATTTTCATAATTTGATCTTCCTGAGCTCAAAATTTCACAAAAATTTTCAGATAT
9066717 CAATTTCATAATATTT
130 CAATTTCATAATATTT
*
9066733 TATGATTTTTGGT
1 CATGATTTTTGGT
9066746 ATTTTAAAAT
Statistics
Matches: 137, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
143 2 0.01
144 93 0.68
145 42 0.31
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (145 bp):
CATGATTTTTGGTGCACTTAAAATCACTATAGTACCCCTAGAAGTGTAAAATTACCAAAATATCC
TTATAGAGGTATTTTCATAATTTGATCTTCCTGAGCTCAAAATTTCACAAAAATTTTCAGATATC
AATTTCATAATATTT
Found at i:9071927 original size:105 final size:105
Alignment explanation
Indices: 9071745--9071957 Score: 399
Period size: 105 Copynumber: 2.0 Consensus size: 105
9071735 ATTATACCAG
*
9071745 TAGATTGAAAGGTGTATTATTTAAATGTGATTGAATTGATATAAATAGAGGTTGCAAGAAACATA
1 TAGATTGAAAAGTGTATTATTTAAATGTGATTGAATTGATATAAATAGAGGTTGCAAGAAACATA
9071810 AATTAAGTTTCACTCTTGTGAATTTTTCACATCTAGCTCA
66 AATTAAGTTTCACTCTTGTGAATTTTTCACATCTAGCTCA
*
9071850 TAGATTGAAAAGTGTATTATTTAAATGTGATTGAATTGATATAAATAGAGGTTGCAAGAAATATA
1 TAGATTGAAAAGTGTATTATTTAAATGTGATTGAATTGATATAAATAGAGGTTGCAAGAAACATA
*
9071915 AATTAAGTTTCACTCTTGTGAATTTTTCACATCTGGCTCA
66 AATTAAGTTTCACTCTTGTGAATTTTTCACATCTAGCTCA
9071955 TAG
1 TAG
9071958 TGAGACTAAT
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 105 1.00
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (105 bp):
TAGATTGAAAAGTGTATTATTTAAATGTGATTGAATTGATATAAATAGAGGTTGCAAGAAACATA
AATTAAGTTTCACTCTTGTGAATTTTTCACATCTAGCTCA
Found at i:9078405 original size:63 final size:63
Alignment explanation
Indices: 9078306--9078521 Score: 299
Period size: 63 Copynumber: 3.4 Consensus size: 63
9078296 ATCAGTAGAA
* *
9078306 AAAATTTATTTTGAAATGACTAGTGCTGAGAAGCCTATGAGTGCTGACCAAGTGATGGAGGAT
1 AAAATTTATTTTGAAATGGCTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTGATGGAGGAT
* * * *
9078369 AAAATTTATTCTGAAATGGCTAGTGCTGAGAAGCCTATGAGTGGTAAACAAGTGATGAAGGAT
1 AAAATTTATTTTGAAATGGCTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTGATGGAGGAT
* * * * *
9078432 GAAATTTGTTTTGAAATGGCTAGTGCTGAGAAGCCTAT-AGTGGTGACCAAGTGATAGAAGAC
1 AAAATTTATTTTGAAATGGCTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTGATGGAGGAT
* *
9078494 AGAATTCATTTTGAAAATGGCTAGTGCT
1 AAAATTTATTTTG-AAATGGCTAGTGCT
9078522 AAAAACCTCA
Statistics
Matches: 133, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
62 27 0.20
63 106 0.80
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.29
Consensus pattern (63 bp):
AAAATTTATTTTGAAATGGCTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTGATGGAGGAT
Found at i:9078912 original size:22 final size:22
Alignment explanation
Indices: 9078856--9078932 Score: 102
Period size: 21 Copynumber: 3.5 Consensus size: 22
9078846 AAAAATCTTT
* *
9078856 GAATTTTTGAGTTCTCAAATGA
1 GAATCTTTGAGTTTTCAAATGA
*
9078878 GAAATCTTGGAGTTTTCAAATGA
1 G-AATCTTTGAGTTTTCAAATGA
*
9078901 GAATCTTTGAG-TTTCAAATAA
1 GAATCTTTGAGTTTTCAAATGA
9078922 GAATCTTTGAG
1 GAATCTTTGAG
9078933 ATGTGAAACC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
21 20 0.41
22 10 0.20
23 19 0.39
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (22 bp):
GAATCTTTGAGTTTTCAAATGA
Done.