Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 55 of 190
Found at i:9079458 original size:41 final size:41
Alignment explanation
Indices: 9079400--9079686 Score: 313
Period size: 41 Copynumber: 7.2 Consensus size: 41
9079390 CATGATTGTC
* *
9079400 GAGGAGCATTTTACTTTTCAAAGTTGTGGTGCCTCTACTTA
1 GAGGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTATTTA
* * * *
9079441 AAGGAGCATTTTACTTTTCAAAGTTATGGTGCCTCTGTTTA
1 GAGGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTATTTA
* * *
9079482 GAGGAACAATTTATTTTTTAAAAGTTGTGGTG---C---TT-
1 GAGGAGCATTTTA-TTTTTCAAAGTTGTGGTGCCTCTATTTA
*
9079517 --CGAGCATTTTATTTTTCAAAAGTTGTGGTGCCTCTATTTA
1 GAGGAGCATTTTATTTTTC-AAAGTTGTGGTGCCTCTATTTA
* *
9079557 GAGGAGCATTTTATTTTTCAAAGTTGTGGTACCTCTATATA
1 GAGGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTATTTA
* * * * * *
9079598 AATGAGCAATTTATTTTTCAAAGTAGTGGTGCCTTTGTTTA
1 GAGGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTATTTA
* *
9079639 GAGGAGTAATTTATTTTTCAAAGTTGTGGTGCCTCTATTTA
1 GAGGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTATTTA
9079680 GAGGAGC
1 GAGGAGC
9079687 TTAATTTATT
Statistics
Matches: 203, Mismatches: 32, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
32 5 0.02
33 20 0.10
36 3 0.01
39 3 0.01
41 141 0.69
42 31 0.15
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.41
Consensus pattern (41 bp):
GAGGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTATTTA
Found at i:9079570 original size:75 final size:73
Alignment explanation
Indices: 9079444--9079586 Score: 214
Period size: 74 Copynumber: 1.9 Consensus size: 73
9079434 CTACTTAAAG
*
9079444 GAGCATTTTACTTTTCAAAGTTATGGTGCCTCTGTTTAGAGGAACAATTTATTTTTTAAAAGTTG
1 GAGCATTTTACTTTTCAAAGTTATGGTGCCTCTATTTAGAGGAACAATTTA-TTTTTAAAAGTTG
9079509 TGGTGCTTC
65 TGGTGCTTC
* * * * *
9079518 GAGCATTTTATTTTTCAAAAGTTGTGGTGCCTCTATTTAGAGGAGCATTTTATTTTTCAAAGTTG
1 GAGCATTTTACTTTTC-AAAGTTATGGTGCCTCTATTTAGAGGAACAATTTATTTTTAAAAGTTG
9079583 TGGT
65 TGGT
9079587 ACCTCTATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
74 31 0.50
75 31 0.50
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.44
Consensus pattern (73 bp):
GAGCATTTTACTTTTCAAAGTTATGGTGCCTCTATTTAGAGGAACAATTTATTTTTAAAAGTTGT
GGTGCTTC
Found at i:9079608 original size:116 final size:116
Alignment explanation
Indices: 9079403--9079686 Score: 338
Period size: 116 Copynumber: 2.4 Consensus size: 116
9079393 GATTGTCGAG
* * *
9079403 GAGCATTTTACTTTTCAAAGTTGTGGTGCCTCTACTTAAAGGAGCATTTTACTTTTCAAAGTTAT
1 GAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCATTTTACTTTTCAAAGTTAT
* * * * * *
9079468 GGTGCCTCTGTTTAGAGGAACAATTTATTTTTTAAAAGTTGTGGTG-C-TTC
66 GGTACCTCTATATAAAGGAACAATTTA-TTTTTAAAAGTAGTGGTGCCTTTA
* *
9079518 GAGCATTTTATTTTTCAAAAGTTGTGGTGCCTCTATTTAGAGGAGCATTTTATTTTTCAAAGTTG
1 GAGCATTTTATTTTTC-AAAGTTGTGGTGCCTCTATTTAGAGGAGCATTTTACTTTTCAAAGTTA
* * *
9079583 TGGTACCTCTATATAAATGAGCAATTTATTTTTCAAAGTAGTGGTGCCTTTGTTTA
65 TGGTACCTCTATATAAAGGAACAATTTATTTTTAAAAGTAGTGGTGCC----TTTA
*
9079639 GAGGAGTAATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGC
1 GAGCA-T--TTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGC
9079687 TTAATTTATT
Statistics
Matches: 144, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
115 31 0.22
116 67 0.47
121 6 0.04
122 1 0.01
123 29 0.20
124 10 0.07
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (116 bp):
GAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCATTTTACTTTTCAAAGTTAT
GGTACCTCTATATAAAGGAACAATTTATTTTTAAAAGTAGTGGTGCCTTTA
Found at i:9079706 original size:43 final size:42
Alignment explanation
Indices: 9079524--9079730 Score: 242
Period size: 41 Copynumber: 5.0 Consensus size: 42
9079514 CTTCGAGCAT
*
9079524 TTTATTTTTCAAAAGTTGTGGTGCCTCTATTTAGAGGAGC-AT
1 TTTATTTTTC-AAAGTTGTGGTGCCTCTATTTAGAGGAGCTAA
* * * *
9079566 TTTATTTTTCAAAGTTGTGGTACCTCTATATAAATGAGC-AA
1 TTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCTAA
* * *
9079607 TTTATTTTTCAAAGTAGTGGTGCCTTTGTTTAGAGGAG-TAA
1 TTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCTAA
9079648 TTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCTTAA
1 TTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGC-TAA
* * * * *
9079691 TTTA-TTTCCAAAAGTTGTTGAGCCTCTGTTTAGAAGAGCT
1 TTTATTTTTC-AAAGTTGTGGTGCCTCTATTTAGAGGAGCT
9079731 TTATTTACTT
Statistics
Matches: 141, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
41 94 0.67
42 15 0.11
43 32 0.23
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.43
Consensus pattern (42 bp):
TTTATTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCTAA
Found at i:9081137 original size:192 final size:190
Alignment explanation
Indices: 9080817--9081180 Score: 431
Period size: 192 Copynumber: 1.9 Consensus size: 190
9080807 AATAAGTAGT
* *
9080817 AATTATCCAATGATGAAATTTACAGAAATTTCAAATGATAAATTTTCATAAAATTCCTAGATGAG
1 AATTATCCAATGATGAAATTTACAGAAATTTCAAATGATAAATTCTCAAAAAATTCCTAGATGAG
* * * * *
9080882 AAATTTTATCTGAATTTGTGCCAAATGATGGAATAATTTAGATAAAGTTTCAATAACAATAATT-
66 AAATTTTATCTAAATCTGTGCCAAATGATGGAAGAATTTAAATAAAGTTTCAATAAAAATAATTG
*
9080946 A-ATATTTATTTTCAATCCCAAAAAGATAAAAAAATAAAAAAATTTAGGTTGAAAATATTTGAC
131 ACATA-TTATTTTC-ATCCCAAAAACA-AAAAAAA-AAAAAAATTTAGGTTGAAAATATTTGAC
* * * *
9081009 AATTATCCAATGATGAGATTCT-TAGAAATTTCAAATGGTAAATTC-CTAAAAAATAT-CTAGGT
1 AATTATCCAATGATGAAATT-TACAGAAATTTCAAATGATAAATTCTC-AAAAAAT-TCCTAGAT
*
9081071 GAGAAATTTCT-T-TAAATCTGT-CCTAAATGGTGGAAGAATTTAAAT-AAGATTTCAATAAAAA
63 GAGAAATTT-TATCTAAATCTGTGCC-AAATGATGGAAGAATTTAAATAAAG-TTTCAAT-AAAA
* *
9081132 ATAATTGACATATTATTTTCTTTCCAAAAACAAAAAAAAAAAAAAATTT
124 ATAATTGACATATTATTTTCATCCCAAAAACAAAAAAAAAAAAAAATTT
9081181 CTAAATTGAC
Statistics
Matches: 148, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
190 15 0.10
191 40 0.27
192 78 0.53
193 12 0.08
194 3 0.02
ACGTcount: A:0.46, C:0.09, G:0.10, T:0.34
Consensus pattern (190 bp):
AATTATCCAATGATGAAATTTACAGAAATTTCAAATGATAAATTCTCAAAAAATTCCTAGATGAG
AAATTTTATCTAAATCTGTGCCAAATGATGGAAGAATTTAAATAAAGTTTCAATAAAAATAATTG
ACATATTATTTTCATCCCAAAAACAAAAAAAAAAAAAAATTTAGGTTGAAAATATTTGAC
Found at i:9084551 original size:68 final size:68
Alignment explanation
Indices: 9084403--9084529 Score: 209
Period size: 68 Copynumber: 1.9 Consensus size: 68
9084393 GCATTACACT
* * * *
9084403 AATGAATAGGATGTTTATAAAATTATTTTTACTGGTATATAAATGGATGATTACGTTTTGTATAT
1 AATGAATAAGATATTTATAAAATTATTTCTACTGGTATATAAATGGATGATTACCTTTTGTATAT
9084468 ATG
66 ATG
*
9084471 AATGAATAAGATATTTATAAAATTATTTCTACTGGTATATGAATGGATGATTACCTTTT
1 AATGAATAAGATATTTATAAAATTATTTCTACTGGTATATAAATGGATGATTACCTTTT
9084530 TACCTTTTGT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 54 1.00
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (68 bp):
AATGAATAAGATATTTATAAAATTATTTCTACTGGTATATAAATGGATGATTACCTTTTGTATAT
ATG
Found at i:9085427 original size:55 final size:54
Alignment explanation
Indices: 9085357--9085501 Score: 159
Period size: 55 Copynumber: 2.7 Consensus size: 54
9085347 TGTCAATAAA
*
9085357 ATATAA-TAA-AAAATTAACACATATAAGTCTATACTAACAATCTCTAACCATTG
1 ATATAAGTAAGAAAATTAA-ACATACAAGTCTATACTAACAATCTCTAACCATTG
* * * *
9085410 ATATAAGTAAGAAAATTAAAGCATACAATTATATACTAACAGTCTCTAACCGTTG
1 ATATAAGTAAGAAAATTAAA-CATACAAGTCTATACTAACAATCTCTAACCATTG
** * * *
9085465 GCATAGGTAAGAAAATTAAAAAATACAAGCCTATACT
1 ATATAAGTAAGAAAATT-AAACATACAAGTCTATACT
9085502 GACGGAAGGT
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
53 6 0.08
54 4 0.05
55 63 0.83
56 3 0.04
ACGTcount: A:0.48, C:0.15, G:0.09, T:0.28
Consensus pattern (54 bp):
ATATAAGTAAGAAAATTAAACATACAAGTCTATACTAACAATCTCTAACCATTG
Found at i:9085623 original size:56 final size:55
Alignment explanation
Indices: 9085538--9085667 Score: 152
Period size: 56 Copynumber: 2.3 Consensus size: 55
9085528 AAGAAAAATT
* * * * *
9085538 ACAAGTCTATATTGACAGGTGTTAACCATCGGTATAGGTAAAAGAAATTAAAACAT
1 ACAAGTCTATACTGATAGGTGCTAACCATCGGTATAGATAAAA-AAATTAAAACAC
* * * * *
9085594 ATAAGTCTATACTGATGGGTGCTAGCCATCGGTATAGATGAGAAAATTAAAACAC
1 ACAAGTCTATACTGATAGGTGCTAACCATCGGTATAGATAAAAAAATTAAAACAC
*
9085649 ACAAATCTATACTGATAGG
1 ACAAGTCTATACTGATAGG
9085668 CTTTAAGCGT
Statistics
Matches: 61, Mismatches: 13, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
55 27 0.44
56 34 0.56
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (55 bp):
ACAAGTCTATACTGATAGGTGCTAACCATCGGTATAGATAAAAAAATTAAAACAC
Found at i:9086509 original size:19 final size:19
Alignment explanation
Indices: 9086485--9086522 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
9086475 TAAAATACCA
9086485 AACTTAAACCCCAAACCCT
1 AACTTAAACCCCAAACCCT
9086504 AACTTAAACCCCAAACCCT
1 AACTTAAACCCCAAACCCT
9086523 TAAACCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.16
Consensus pattern (19 bp):
AACTTAAACCCCAAACCCT
Found at i:9086758 original size:19 final size:18
Alignment explanation
Indices: 9086730--9086776 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
9086720 CTTAAAATTG
9086730 AACCC-AAACCCTAAACC
1 AACCCTAAACCCTAAACC
*
9086747 AAACCCTGAACCCTAAACC
1 -AACCCTAAACCCTAAACC
9086766 AACCCTAAACC
1 AACCCTAAACC
9086777 ACAAAAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.45, C:0.45, G:0.02, T:0.09
Consensus pattern (18 bp):
AACCCTAAACCCTAAACC
Found at i:9088582 original size:19 final size:19
Alignment explanation
Indices: 9088548--9088597 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
9088538 CCAAATCCCA
* *
9088548 AAAACTCAAAGCCAAACCTCT
1 AAAA-TCAAAGTCAAACC-CC
9088569 AAAA-CAAAGTCAAACCCC
1 AAAATCAAAGTCAAACCCC
9088587 AAAATCAAAGT
1 AAAATCAAAGT
9088598 TGAAACCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 5 0.19
19 17 0.65
21 4 0.15
ACGTcount: A:0.54, C:0.28, G:0.06, T:0.12
Consensus pattern (19 bp):
AAAATCAAAGTCAAACCCC
Found at i:9088588 original size:40 final size:39
Alignment explanation
Indices: 9088510--9088590 Score: 94
Period size: 40 Copynumber: 2.1 Consensus size: 39
9088500 GTTAAACCCT
* *
9088510 AAACTAAAAGCAAACTCTAAACCTAAATCCAAATCCCAA
1 AAACTAAAAGCAAACTCTAAAACTAAATCCAAACCCCAA
*
9088549 AAACTCAAAGCCAAACCTCTAAAAC-AAAGT-CAAACCCCAA
1 AAACTAAAAG-CAAA-CTCTAAAACTAAA-TCCAAACCCCAA
9088589 AA
1 AA
9088591 TCAAAGTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
39 9 0.25
40 18 0.50
41 9 0.25
ACGTcount: A:0.54, C:0.30, G:0.04, T:0.12
Consensus pattern (39 bp):
AAACTAAAAGCAAACTCTAAAACTAAATCCAAACCCCAA
Found at i:9089979 original size:77 final size:77
Alignment explanation
Indices: 9089888--9090038 Score: 248
Period size: 77 Copynumber: 2.0 Consensus size: 77
9089878 TATCATTTCA
* * *
9089888 TTTCTTATTTAAATATGAATAATAGTTTTTCATTTAATATTAAAGGTAATAATTGTTTCTTTTAT
1 TTTCTTAGTAAAATATGAATAATAGTTTTTCATTTAATATTAAAGATAATAATTGTTTCTTTTAT
9089953 TTAAATGATCAT
66 TTAAATGATCAT
* **
9089965 TTTCTTAGTAAAATATGAATAATGGTTTTTGGTTTAATATTAAAGATAATAATTGTTTCTTTTAT
1 TTTCTTAGTAAAATATGAATAATAGTTTTTCATTTAATATTAAAGATAATAATTGTTTCTTTTAT
9090030 TTAAATGAT
66 TTAAATGAT
9090039 ATCTTTTATG
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
77 68 1.00
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (77 bp):
TTTCTTAGTAAAATATGAATAATAGTTTTTCATTTAATATTAAAGATAATAATTGTTTCTTTTAT
TTAAATGATCAT
Found at i:9092055 original size:19 final size:20
Alignment explanation
Indices: 9092012--9092055 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 20
9092002 GACTTAATTA
*
9092012 ATAATGTTTACATTTTAACT
1 ATAATGTTTACATTTTAAAT
9092032 ATAAT-TTTA-ATTTTAAAT
1 ATAATGTTTACATTTTAAAT
9092050 AGTAAT
1 A-TAAT
9092056 AAAGTGTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 9 0.41
19 8 0.36
20 5 0.23
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.50
Consensus pattern (20 bp):
ATAATGTTTACATTTTAAAT
Found at i:9092616 original size:72 final size:72
Alignment explanation
Indices: 9092400--9092636 Score: 217
Period size: 73 Copynumber: 3.2 Consensus size: 72
9092390 TCAAAACACA
* ** * * *
9092400 ATCTTTGTTGAAAATATATTTTAAAATTTTATTTTTTAGAACTCAATAAAAATGATGTTTTTAAG
1 ATCTTTGTAG-AAA-ATA-TTTAAAAAATTAGTTTTTAGAATTCAATAAAAA-GATATTTTTAAG
*
9092465 AAAAAAAAGTG
62 AAAAAAATGTG
* * * * * * *
9092476 ATCTTTGCAAAAAATA-TGAAAATGATTAGTTTTCAGAATTCAATAAAGAAGACATTTTTAAGAT
1 ATCTTTGTAGAAAATATTTAAAA-AATTAGTTTTTAGAATTCAATAAA-AAGATATTTTTAAGAA
*
9092540 AAAAATTTG
64 AAAAATGTG
* * *
9092549 ATCTTTGTTGAAAATATTTAAAAAATTA-TTTTTAGAATTCAACAAAAACGATATTTTTATGAAA
1 ATCTTTGTAGAAAATATTTAAAAAATTAGTTTTTAGAATTCAATAAAAA-GATATTTTTAAGAAA
9092613 AAAATGTG
65 AAAATGTG
* *
9092621 GTCTATGTAGAAAATA
1 ATCTTTGTAGAAAATA
9092637 GCAAATATTT
Statistics
Matches: 129, Mismatches: 28, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
71 2 0.02
72 53 0.41
73 54 0.42
74 10 0.08
75 3 0.02
76 7 0.05
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.38
Consensus pattern (72 bp):
ATCTTTGTAGAAAATATTTAAAAAATTAGTTTTTAGAATTCAATAAAAAGATATTTTTAAGAAAA
AAATGTG
Found at i:9092653 original size:72 final size:72
Alignment explanation
Indices: 9092422--9092666 Score: 239
Period size: 72 Copynumber: 3.4 Consensus size: 72
9092412 AATATATTTT
* * * * *
9092422 AAAAT-TTTATTTTTTAGAACTCAATAAAAATGATGTTTTTAAGAAAAAAAAGTGATCTTTGCAA
1 AAAATATTTATTTTTTAGAATTCAATAAAAA-GATATTTTTAAGAAAAAAATGTGATCTTTGTAG
9092486 AAAATATG
65 AAAATATG
* * * * * *
9092494 AAAATGA-TTAGTTTTCAGAATTCAATAAAGAAGACATTTTTAAGATAAAAATTTGATCTTTGTT
1 AAAAT-ATTTATTTTTTAGAATTCAATAAA-AAGATATTTTTAAGAAAAAAATGTGATCTTTGTA
*
9092558 GAAAATATTT
64 GAAAATA-TG
* * * * *
9092568 AAAA-AATTA-TTTTTAGAATTCAACAAAAACGATATTTTTATGAAAAAAATGTGGTCTATGTAG
1 AAAATATTTATTTTTTAGAATTCAATAAAAA-GATATTTTTAAGAAAAAAATGTGATCTTTGTAG
9092631 AAAATA-G
65 AAAATATG
* *
9092638 CAAATATTTATTTTTTAGAATTTAATAAA
1 AAAATATTTATTTTTTAGAATTCAATAAA
9092667 GACTACATGT
Statistics
Matches: 139, Mismatches: 26, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
70 3 0.02
71 6 0.04
72 70 0.50
73 53 0.38
74 7 0.05
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (72 bp):
AAAATATTTATTTTTTAGAATTCAATAAAAAGATATTTTTAAGAAAAAAATGTGATCTTTGTAGA
AAATATG
Found at i:9092716 original size:144 final size:145
Alignment explanation
Indices: 9092432--9092740 Score: 322
Period size: 145 Copynumber: 2.1 Consensus size: 145
9092422 AAAATTTTAT
* * * * *
9092432 TTTTTAGAACTCAATAAAAATGATGTTTTTAAGAAAAAAAAGTGATCTTTGCAAAAAATATGAAA
1 TTTTTAGAATTCAACAAAAACGATATTTTTAAGAAAAAAAAGTGATCTATGCAAAAAATATGAAA
* * *
9092497 ATGATTAGTTTTCAGAATTCAATAAAGAAGACATTTTTAAGATAAAAATTTGATCTTTGTTGAAA
66 ATGATTAGTTTTCAGAATTCAATAAAGAAGACATTTTTAAGATAAAAATATGATCATTGTTAAAA
**
9092562 ATATTTAAAAAATTA
131 ATATAAAAAAAATTA
* * * * * *
9092577 TTTTTAGAATTCAACAAAAACGATATTTTTATGAAAAAAATGTGGTCTATGTAGAAAATA-GCAA
1 TTTTTAGAATTCAACAAAAACGATATTTTTAAGAAAAAAAAGTGATCTATGCAAAAAATATGAAA
* * * **
9092641 AT-ATTTATTTTTTAGAATTTAATAAAGACTACATGTTTT-AGATAAAAA-ATGCAAT-ATTGTT
66 ATGA-TTAGTTTTCAGAATTCAATAAAGAAGACAT-TTTTAAGATAAAAATATG--ATCATTGTT
*
9092702 AAAAATATAAAAAAATTTA
127 AAAAATATAAAAAAAATTA
* *
9092721 TTTTTAAAAATTTAACAAAA
1 TTTTT-AGAATTCAACAAAA
9092741 GTAACGTGTT
Statistics
Matches: 135, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
143 3 0.02
144 64 0.47
145 68 0.50
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.37
Consensus pattern (145 bp):
TTTTTAGAATTCAACAAAAACGATATTTTTAAGAAAAAAAAGTGATCTATGCAAAAAATATGAAA
ATGATTAGTTTTCAGAATTCAATAAAGAAGACATTTTTAAGATAAAAATATGATCATTGTTAAAA
ATATAAAAAAAATTA
Found at i:9092722 original size:24 final size:24
Alignment explanation
Indices: 9092695--9092740 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
9092685 AAAAATGCAA
9092695 TATTGTTAAAAATATAAAAAAATT
1 TATTGTTAAAAATATAAAAAAATT
* * *
9092719 TATTTTTAAAAATTTAACAAAA
1 TATTGTTAAAAATATAAAAAAA
9092741 GTAACGTGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (24 bp):
TATTGTTAAAAATATAAAAAAATT
Found at i:9095484 original size:3 final size:3
Alignment explanation
Indices: 9095476--9095506 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
9095466 ATTAATTTGC
9095476 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
9095507 TGTAGGTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:9099870 original size:21 final size:21
Alignment explanation
Indices: 9099837--9099894 Score: 98
Period size: 21 Copynumber: 2.7 Consensus size: 21
9099827 GTGATTTTGG
9099837 CCTTCAGGGGATCGATCCCCTC
1 CCTT-AGGGGATCGATCCCCTC
*
9099859 CCTTAGGCGATCGATCCCCTC
1 CCTTAGGGGATCGATCCCCTC
9099880 CCTTAGGGGATCGAT
1 CCTTAGGGGATCGAT
9099895 TGGTTCATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
21 30 0.88
22 4 0.12
ACGTcount: A:0.16, C:0.36, G:0.24, T:0.24
Consensus pattern (21 bp):
CCTTAGGGGATCGATCCCCTC
Found at i:9102085 original size:94 final size:96
Alignment explanation
Indices: 9101881--9102091 Score: 268
Period size: 94 Copynumber: 2.2 Consensus size: 96
9101871 TTGGTAAAAT
* ** * ** *
9101881 TTAATTCGAGATTTAAATCCTCCAATCATTTGGTAGGTTTGAAATTTTATTTTTTTTCAAGAAAA
1 TTAATTCGAGATTTGAATCCTCCAATCATTTAATAGGATTGAAAAATTATTGTTTTTCAAGAAAA
* *
9101946 TTTATTAAGTCCTTAAATCATTTGGTAGTAC
66 TTCATTAAGTCCTCAAATCATTTGGTAGTAC
*
9101977 TTAATTCAAGATTTGAATCCTCCAATCATTTAATAGGATTGAAAAATTA-TGTTTTT-AAGAAAA
1 TTAATTCGAGATTTGAATCCTCCAATCATTTAATAGGATTGAAAAATTATTGTTTTTCAAGAAAA
*
9102040 TTCATTAAGTCCTCCAA-CTATTTGGT-GATAC
66 TTCATTAAGTCCTCAAATC-ATTTGGTAG-TAC
*
9102071 TTAATTCGATATTTGAATCCT
1 TTAATTCGAGATTTGAATCCT
9102092 TTAATTGTTT
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
93 2 0.02
94 50 0.50
95 6 0.06
96 42 0.42
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (96 bp):
TTAATTCGAGATTTGAATCCTCCAATCATTTAATAGGATTGAAAAATTATTGTTTTTCAAGAAAA
TTCATTAAGTCCTCAAATCATTTGGTAGTAC
Found at i:9102974 original size:17 final size:17
Alignment explanation
Indices: 9102952--9102986 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
9102942 AGGAGTACTT
9102952 AATTGTAAAAGGTCTAG
1 AATTGTAAAAGGTCTAG
9102969 AATTGTAAAAGGTCTAG
1 AATTGTAAAAGGTCTAG
9102986 A
1 A
9102987 CAATTGGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.23, T:0.29
Consensus pattern (17 bp):
AATTGTAAAAGGTCTAG
Found at i:9103505 original size:6 final size:6
Alignment explanation
Indices: 9103496--9103587 Score: 76
Period size: 6 Copynumber: 15.2 Consensus size: 6
9103486 ACTTTCGATC
* * * * * *
9103496 AAAATT AAAAAT AAAATC ATAATT AAAATT AAAATCC AAAATC AAACTT
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAAT-T AAAATT AAAATT
* * * * *
9103545 GAAATG AAAATT AAAATC AAAATC AACATT AAAATT AAAATT A
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT A
9103588 TGGGCTTTTA
Statistics
Matches: 67, Mismatches: 18, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
6 62 0.93
7 5 0.07
ACGTcount: A:0.63, C:0.09, G:0.02, T:0.26
Consensus pattern (6 bp):
AAAATT
Found at i:9104157 original size:28 final size:28
Alignment explanation
Indices: 9104124--9104180 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
9104114 CATTTAAAAA
*
9104124 ATGAATTAAGAAATGGGCTCTTTTAAAT
1 ATGAATTAAGAAATAGGCTCTTTTAAAT
* *
9104152 ATGAATTAGGAAATATGCTCTTTTAAAT
1 ATGAATTAAGAAATAGGCTCTTTTAAAT
9104180 A
1 A
9104181 GATGCTTAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (28 bp):
ATGAATTAAGAAATAGGCTCTTTTAAAT
Found at i:9104242 original size:50 final size:50
Alignment explanation
Indices: 9104188--9104304 Score: 198
Period size: 50 Copynumber: 2.3 Consensus size: 50
9104178 ATAGATGCTT
**
9104188 AACAACTTTAAAAAATTAATTAAGAAATAAGCTTTTCTAAACAGAAACTC
1 AACAACTTTAAAAAATTAATTAAGAAATAAGCTCCTCTAAACAGAAACTC
* *
9104238 AACAACTTTAAAAAATGAATTAAGAAATAGGCTCCTCTAAACAGAAACTC
1 AACAACTTTAAAAAATTAATTAAGAAATAAGCTCCTCTAAACAGAAACTC
9104288 AACAACTTTAAAAAATT
1 AACAACTTTAAAAAATT
9104305 CGATTGATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.52, C:0.15, G:0.07, T:0.26
Consensus pattern (50 bp):
AACAACTTTAAAAAATTAATTAAGAAATAAGCTCCTCTAAACAGAAACTC
Found at i:9104636 original size:18 final size:18
Alignment explanation
Indices: 9104615--9104702 Score: 88
Period size: 18 Copynumber: 4.9 Consensus size: 18
9104605 TTACAATGAA
** *
9104615 TTCAAGATTTGTAAAGGT
1 TTCAAGATTCATAAAGAT
*
9104633 TTCAACATTCATAAAGAT
1 TTCAAGATTCATAAAGAT
9104651 TTCAAGATTCATAAAGAT
1 TTCAAGATTCATAAAGAT
*
9104669 TTCAAAATTC-TCAAAGAT
1 TTCAAGATTCAT-AAAGAT
* * *
9104687 TCCAGGATTCACAAAG
1 TTCAAGATTCATAAAG
9104703 GTTCTTAGAT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
17 1 0.02
18 57 0.98
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (18 bp):
TTCAAGATTCATAAAGAT
Found at i:9104655 original size:36 final size:36
Alignment explanation
Indices: 9104557--9104702 Score: 97
Period size: 36 Copynumber: 4.1 Consensus size: 36
9104547 TTAAGCTTTC
* * * *
9104557 AAAG-TTTTAAAATTCACAAAAGATTT-AAGTTTCAC
1 AAAGATTTCAAAATTCTC-AAAGATTTCAAGATTCAT
* * **
9104592 AAAGGA--TCAAAATT-TACAATGAATTCAAGATTTGT
1 AAA-GATTTCAAAATTCT-CAAAGATTTCAAGATTCAT
* *
9104627 AAAGGTTTCAACATTCAT-AAAGATTTCAAGATTCAT
1 AAAGATTTCAAAATTC-TCAAAGATTTCAAGATTCAT
* * *
9104663 AAAGATTTCAAAATTCTCAAAGATTCCAGGATTCAC
1 AAAGATTTCAAAATTCTCAAAGATTTCAAGATTCAT
9104699 AAAG
1 AAAG
9104703 GTTCTTAGAT
Statistics
Matches: 83, Mismatches: 19, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
34 7 0.08
35 20 0.24
36 55 0.66
38 1 0.01
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.31
Consensus pattern (36 bp):
AAAGATTTCAAAATTCTCAAAGATTTCAAGATTCAT
Found at i:9113323 original size:12 final size:12
Alignment explanation
Indices: 9113272--9113339 Score: 55
Period size: 12 Copynumber: 5.6 Consensus size: 12
9113262 ATAAAATGGC
*
9113272 AATTAAAATTAA
1 AATTAAAATCAA
*
9113284 AATCCAAAATCAA
1 AAT-TAAAATCAA
* * *
9113297 ACTTGAAATCGA
1 AATTAAAATCAA
9113309 AATTAAAATCAA
1 AATTAAAATCAA
* * *
9113321 AATCAACATTAA
1 AATTAAAATCAA
9113333 AATTAAA
1 AATTAAA
9113340 TTGTGGGCTT
Statistics
Matches: 41, Mismatches: 14, Indels: 2
0.72 0.25 0.04
Matches are distributed among these distances:
12 32 0.78
13 9 0.22
ACGTcount: A:0.60, C:0.12, G:0.03, T:0.25
Consensus pattern (12 bp):
AATTAAAATCAA
Found at i:9114834 original size:11 final size:11
Alignment explanation
Indices: 9114818--9114842 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9114808 CACAAGGTAG
9114818 AAATAAATTAA
1 AAATAAATTAA
9114829 AAATAAATTAA
1 AAATAAATTAA
9114840 AAA
1 AAA
9114843 AAAAGACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAATAAATTAA
Found at i:9119740 original size:57 final size:56
Alignment explanation
Indices: 9119610--9119996 Score: 386
Period size: 57 Copynumber: 6.7 Consensus size: 56
9119600 TTTTGTGTAG
* * *
9119610 GAAAAATTGATACTTTCAACTTTTGCCCAAAATATTTTTTTTAGAAATTTTAATCTCGA
1 GAAAAATTGATACTTTCAACTTTT-CCCAAAA-ATATTTTTT-GAAAATTTAATTTCGA
* * * *
9119669 GGAAAATTTATACTTTCAACTTTTCTCCAAATATATCTTTT-AAAACTTTAATTTCGA
1 GAAAAATTGATACTTTCAACTTTTC-CCAAAAATATTTTTTGAAAA-TTTAATTTCGA
** **
9119726 GAAAAATT-AGTACTTTCAACTTTTCCTCAAAAACCTTTTTTGAAAATTT-ATTTTTA
1 GAAAAATTGA-TACTTTCAACTTTTCC-CAAAAATATTTTTTGAAAATTTAATTTCGA
* **
9119782 AAGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAACCTTAATTTCGA
1 GA-AAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTT-GAAAATTTAATTTCGA
* * * * **
9119841 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTAGACAGTTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTGAAAATTTAATTTCGA
* * **
9119898 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACT-TTTTTTGAAAATTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCC-CAAAAA-TATTTTTTGAAAATTTAATTTCGA
*
9119955 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTT
1 GAAAAATTGATACTTTCAACTTTT-CCCAAAAATAT-TTTTT
9119997 TTGGATTTTA
Statistics
Matches: 279, Mismatches: 33, Indels: 33
0.81 0.10 0.10
Matches are distributed among these distances:
56 14 0.05
57 166 0.59
58 66 0.24
59 33 0.12
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (56 bp):
GAAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAAATTTAATTTCGA
Found at i:9119855 original size:115 final size:113
Alignment explanation
Indices: 9119610--9119996 Score: 463
Period size: 115 Copynumber: 3.4 Consensus size: 113
9119600 TTTTGTGTAG
* * * * * **
9119610 GAAAAATTGATACTTTCAACTTTTGCCCAAAATATTTTTTTTAGAAATTTTAATCTCGAGGAAAA
1 GAAAAATTGATACTTTCAACTTTTCCCCAAAA-ATATTTTTT-GAAAATTTATTTTTAAGGAAAA
* * * *
9119675 TTTATACTTTCAACTTTTCTCCAAATATATCTTTTAAAACTTTAATTTCGA
64 TTGATACTTTCAACTTTTC-CCAAAAATATTTTTTGAAACTTTAATTTCGA
* ** *
9119726 GAAAAATT-AGTACTTTCAACTTTTCCTCAAAAACCTTTTTTGAAAATTTATTTTTAAAGAAAAT
1 GAAAAATTGA-TACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAAT
*
9119790 TGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAACCTTAATTTCGA
65 TGATACTTTCAAC-TTTTCCCAAAAATATTTTTT-GAAACTTTAATTTCGA
* * *
9119841 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTAGACAGTTTATTTTTAAGGAAAATT
1 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
* * **
9119906 GATACTTTCAACTTTTCCTCAAAAACT-TTTTTTGAAAATTTATTTTTAA
66 GATACTTTCAACTTTTCC-CAAAAA-TATTTTTTGAAACTTTAATTTCGA
*
9119955 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTT
1 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATAT-TTTTT
9119997 TTGGATTTTA
Statistics
Matches: 235, Mismatches: 29, Indels: 15
0.84 0.10 0.05
Matches are distributed among these distances:
114 94 0.40
115 111 0.47
116 30 0.13
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (113 bp):
GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
GATACTTTCAACTTTTCCCAAAAATATTTTTTGAAACTTTAATTTCGA
Found at i:9119920 original size:172 final size:172
Alignment explanation
Indices: 9119612--9119996 Score: 549
Period size: 172 Copynumber: 2.2 Consensus size: 172
9119602 TTGTGTAGGA
* * ** *
9119612 AAAATTGATACTTTCAACTTTTGCCCAAAATATTTTTTTTAGAAATTTTAATCTCGAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCCAAAA-ATATTTTTTAGAAACCTTAATCTCGAGAAAAATT
* * * *
9119677 TATACTTTCAACTTTTCTCCAAATATATCTTTTAAAACTTTAATTTCGAGAAAAATTAGTACTTT
65 GATACTTTCAACTTTTCCCCAAAAATATCTTTTAAAACTTTAATTTCAAGAAAAATTAGTACTTT
9119742 CAACTTTTCCTCAAAAACCTTTTTTGAAAATTTATTTTTAAAG
130 CAACTTTTCCTCAAAAACCTTTTTTGAAAATTTATTTTTAAAG
* * *
9119785 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAACCTTAATTTCGAGAAAAATTG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTAGAAACCTTAATCTCGAGAAAAATTG
* * * * *
9119850 ATACTTTCAACTTTTCCCCAAAAATAT-TTTTAGACAGTTTATTTTTAAGGAAAATT-GATACTT
66 ATACTTTCAACTTTTCCCCAAAAATATCTTTTA-AAACTTTAATTTCAAGAAAAATTAG-TACTT
* *
9119913 TCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGG
129 TCAACTTTTCCTCAAAAACCTTTTTTGAAAATTTATTTTTAAAG
9119957 AAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATAT-TTTTT
9119997 TTGGATTTTA
Statistics
Matches: 190, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
171 6 0.03
172 150 0.79
173 34 0.18
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.43
Consensus pattern (172 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTAGAAACCTTAATCTCGAGAAAAATTG
ATACTTTCAACTTTTCCCCAAAAATATCTTTTAAAACTTTAATTTCAAGAAAAATTAGTACTTTC
AACTTTTCCTCAAAAACCTTTTTTGAAAATTTATTTTTAAAG
Found at i:9120022 original size:5 final size:5
Alignment explanation
Indices: 9120014--9120176 Score: 67
Period size: 5 Copynumber: 32.2 Consensus size: 5
9120004 TTATTTAAAG
* *
9120014 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AATAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AA-AAT
* *
9120059 AAAAT AAAGA- AAAGT AAAACA AAAAT AAAAAT AAAAT AAAGAT AAAAAT
1 AAAAT AAA-AT AAAAT AAAA-T AAAAT -AAAAT AAAAT AAA-AT -AAAAT
* * * *
9120108 AAAAG AATAT TAAAT AAACCT AATCTAAT AAAAT -AAAT -AAAT -AAAT
1 AAAAT AAAAT AAAAT AAA-AT AA---AAT AAAAT AAAAT AAAAT AAAAT
*
9120154 -AAAT -AAGT AAAAT -AAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
9120177 TATAAAAAAT
Statistics
Matches: 123, Mismatches: 17, Indels: 36
0.70 0.10 0.20
Matches are distributed among these distances:
3 3 0.02
4 25 0.20
5 63 0.51
6 21 0.17
7 7 0.06
8 3 0.02
9 1 0.01
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:9120056 original size:37 final size:35
Alignment explanation
Indices: 9120014--9120111 Score: 101
Period size: 37 Copynumber: 2.8 Consensus size: 35
9120004 TTATTTAAAG
**
9120014 AAAATAAAATAATAAA-ACAAAATAAAAGTGAAAATAA
1 AAAATAAAATAATAAAGA-AAAATAAAA-CAAAAAT-A
* *
9120051 AAAATAAAAAAATAAAGAAAAGTAAAACAAAAATA
1 AAAATAAAATAATAAAGAAAAATAAAACAAAAATA
* *
9120086 AAAATAAAATAA-AGATAAAAATAAAA
1 AAAATAAAATAATAAAGAAAAATAAAA
9120112 GAATATTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
34 11 0.21
35 12 0.23
36 5 0.10
37 23 0.44
38 1 0.02
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (35 bp):
AAAATAAAATAATAAAGAAAAATAAAACAAAAATA
Found at i:9120059 original size:6 final size:6
Alignment explanation
Indices: 9120014--9120111 Score: 71
Period size: 6 Copynumber: 16.5 Consensus size: 6
9120004 TTATTTAAAG
* *
9120014 AAAAT- AAAATA ATAAA-A CAAAATA AAAGTG AAAATAA AAAATA AAAA-A
1 AAAATA AAAATA A-AAATA -AAAATA AAAATA AAAAT-A AAAATA AAAATA
* * * *
9120062 ATAAAGA AAAGT- AAAACA AAAATA AAAAT- AAAATA AAGATA AAAATA
1 A-AAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
9120109 AAA
1 AAA
9120112 GAATATTAAA
Statistics
Matches: 73, Mismatches: 11, Indels: 17
0.72 0.11 0.17
Matches are distributed among these distances:
5 15 0.21
6 46 0.63
7 12 0.16
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:9120071 original size:17 final size:17
Alignment explanation
Indices: 9120009--9120114 Score: 58
Period size: 17 Copynumber: 5.9 Consensus size: 17
9119999 GGATTTTATT
*
9120009 TAAAGAAAATAAAA-TAA
1 TAAA-AAAATAAAAGAAA
9120026 TAAAACAAAATAAAAGTGAAA
1 T-AAA-AAAATAAAA--GAAA
9120047 -ATAAAAAATAAAA-AAA
1 TA-AAAAAATAAAAGAAA
*
9120063 TAAAGAAAAGTAAAACAAA
1 TAAA-AAAA-TAAAAGAAA
*
9120082 -AATAAAAATAAAATAAA
1 TAA-AAAAATAAAAGAAA
* *
9120099 GATAAAAATAAAAGAA
1 TAAAAAAATAAAAGAA
9120115 TATTAAATAA
Statistics
Matches: 73, Mismatches: 5, Indels: 22
0.73 0.05 0.22
Matches are distributed among these distances:
16 5 0.07
17 26 0.36
18 24 0.33
19 14 0.19
20 2 0.03
21 2 0.03
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (17 bp):
TAAAAAAATAAAAGAAA
Found at i:9120082 original size:29 final size:31
Alignment explanation
Indices: 9120019--9120089 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 31
9120009 TAAAGAAAAT
*
9120019 AAAATAATAAAACAAAATAAAAGTGAAAATAA
1 AAAATAA-AAAACAAAAGAAAAGTGAAAATAA
*
9120051 AAAATAAAAAA-ATAAAGAAAAGT-AAAA-CA
1 AAAATAAAAAACA-AAAGAAAAGTGAAAATAA
9120080 AAAATAAAAA
1 AAAATAAAAA
9120090 TAAAATAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
29 11 0.31
30 5 0.14
31 13 0.36
32 7 0.19
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.13
Consensus pattern (31 bp):
AAAATAAAAAACAAAAGAAAAGTGAAAATAA
Found at i:9120100 original size:32 final size:33
Alignment explanation
Indices: 9120014--9120100 Score: 90
Period size: 32 Copynumber: 2.6 Consensus size: 33
9120004 TTATTTAAAG
* * *
9120014 AAAATAAAATAATAAAACAAAATAAAAGTGAAAATA
1 AAAAT-AAA-AATAAAA-TAAAGAAAAGTGAAAACA
*
9120050 AAAA-ATAAA-AAAATAAAGAAAAGT-AAAACA
1 AAAATAAAAATAAAATAAAGAAAAGTGAAAACA
9120080 AAAATAAAAATAAAATAAAGA
1 AAAATAAAAATAAAATAAAGA
9120101 TAAAAATAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
30 9 0.20
31 13 0.30
32 14 0.32
33 2 0.05
34 2 0.05
36 4 0.09
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (33 bp):
AAAATAAAAATAAAATAAAGAAAAGTGAAAACA
Found at i:9120147 original size:4 final size:4
Alignment explanation
Indices: 9120138--9120186 Score: 55
Period size: 4 Copynumber: 12.0 Consensus size: 4
9120128 TAATCTAATA
* *
9120138 AAAT AAAT AAAT AAAT AAAT AAGT AAAAT AAAT AAAAT ATAT AAA- AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT -AAAT AAAT AAAT AAAT
9120187 GAAAATGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
3 3 0.08
4 28 0.74
5 7 0.18
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:9120156 original size:17 final size:17
Alignment explanation
Indices: 9120134--9120192 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
9120124 AACCTAATCT
9120134 AATAAAATAAATAAATA
1 AATAAAATAAATAAATA
*
9120151 AAT-AAATAAGTAAAATA
1 AATAAAATAAAT-AAATA
*
9120168 AATAAAATATATAAA-A
1 AATAAAATAAATAAATA
9120184 AATGAAAAT
1 AAT-AAAAT
9120193 GAAAAAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
16 11 0.31
17 19 0.53
18 6 0.17
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
AATAAAATAAATAAATA
Found at i:9121049 original size:31 final size:31
Alignment explanation
Indices: 9121011--9121071 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
9121001 AATAAATAAA
9121011 AAAAATAAA-AAAATCAAAT-AAAAATATTAAT
1 AAAAATAAATAAAAT-AAATCAAAAA-ATTAAT
*
9121042 AAAAATAAATCAAATAAATCAAAAAATTAA
1 AAAAATAAATAAAATAAATCAAAAAATTAA
9121072 CAGATAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 18 0.67
32 9 0.33
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (31 bp):
AAAAATAAATAAAATAAATCAAAAAATTAAT
Found at i:9121060 original size:13 final size:13
Alignment explanation
Indices: 9121001--9121060 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
9120991 ACTTCAGCCG
**
9121001 AATAAATAAAAAA
1 AATAAATAAATCA
*
9121014 AATAAAAAAATCA
1 AATAAATAAATCA
*
9121027 AATAAA-AATATTA
1 AATAAATAA-ATCA
*
9121040 ATAAAAATAAATCA
1 A-ATAAATAAATCA
9121054 AATAAAT
1 AATAAAT
9121061 CAAAAAATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
12 2 0.05
13 25 0.68
14 8 0.22
15 2 0.05
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (13 bp):
AATAAATAAATCA
Found at i:9121080 original size:12 final size:12
Alignment explanation
Indices: 9121065--9121104 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
9121055 ATAAATCAAA
9121065 AAATTAACAGAT
1 AAATTAACAGAT
9121077 AAATTAA-A-ATT
1 AAATTAACAGA-T
9121088 AAA-TAACAGAT
1 AAATTAACAGAT
9121099 AAATTA
1 AAATTA
9121105 TAATATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (12 bp):
AAATTAACAGAT
Found at i:9121206 original size:6 final size:6
Alignment explanation
Indices: 9121195--9121283 Score: 76
Period size: 6 Copynumber: 15.2 Consensus size: 6
9121185 AATACATAAG
* * * * * **
9121195 ATAAAA AT-AAA AGAAAA ATATAT ATAAAA ACAATA ATAATG ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
*
9121242 ATAAAA AT-AAA ACAAAA AT-AAA ATAAAA ATAAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA AT-AAAA ATAAAA A
9121284 AAATAGACTT
Statistics
Matches: 65, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
5 13 0.20
6 46 0.71
7 6 0.09
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:9121211 original size:11 final size:11
Alignment explanation
Indices: 9121190--9121288 Score: 83
Period size: 11 Copynumber: 8.7 Consensus size: 11
9121180 TAATAAATAC
*
9121190 ATAAGATAAAA
1 ATAAAATAAAA
*
9121201 ATAAAAGAAAA
1 ATAAAATAAAA
*
9121212 ATATATATAAAA
1 ATA-AAATAAAA
* **
9121224 ACAATAATAATG
1 ATAA-AATAAAA
9121236 ATAAAAATAAAA
1 AT-AAAATAAAA
*
9121248 ATAAAACAAAA
1 ATAAAATAAAA
9121259 ATAAAATAAAA
1 ATAAAATAAAA
9121270 ATAAAA-AATAA
1 ATAAAATAA-AA
*
9121281 AAAAAATA
1 ATAAAATA
9121289 GACTTACCTA
Statistics
Matches: 69, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
10 2 0.03
11 44 0.64
12 21 0.30
13 2 0.03
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:9121250 original size:18 final size:18
Alignment explanation
Indices: 9121149--9121288 Score: 76
Period size: 18 Copynumber: 7.9 Consensus size: 18
9121139 TAATAGGAAG
9121149 AAAAA-AAAAATAATAAT
1 AAAAATAAAAATAATAAT
** * * *
9121166 AAGGATATATATATTAAT
1 AAAAATAAAAATAATAAT
* *
9121184 AAATACAT-AAGATAAAAAT
1 AAA-A-ATAAAAATAATAAT
*
9121203 -AAAAGAAAAAT-ATATAT
1 AAAAATAAAAATAATA-AT
* * *
9121220 AAAAACAATAATAATGAT
1 AAAAATAAAAATAATAAT
*
9121238 AAAAATAAAAATAA-AAC
1 AAAAATAAAAATAATAAT
*
9121255 AAAAAT-AAAATAAAAAT
1 AAAAATAAAAATAATAAT
*
9121272 AAAAAATAAAAAAAATA
1 -AAAAATAAAAATAATA
9121289 GACTTACCTA
Statistics
Matches: 89, Mismatches: 24, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
16 10 0.11
17 19 0.21
18 42 0.47
19 16 0.18
20 2 0.02
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.21
Consensus pattern (18 bp):
AAAAATAAAAATAATAAT
Found at i:9121253 original size:29 final size:29
Alignment explanation
Indices: 9121197--9121286 Score: 96
Period size: 29 Copynumber: 3.1 Consensus size: 29
9121187 TACATAAGAT
* * *
9121197 AAAAATAAAAGAAAAAT-ATATATAAAAAC
1 AAAAATAAAATAAAAATAAAAAAT-AAAAC
* *
9121226 AATAATAATGATAAAAAT-AAAAATAAAAC
1 AAAAATAA-AATAAAAATAAAAAATAAAAC
9121255 AAAAATAAAATAAAAATAAAAAATAAAA-
1 AAAAATAAAATAAAAATAAAAAATAAAAC
9121283 AAAA
1 AAAA
9121287 TAGACTTACC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
28 12 0.23
29 29 0.56
30 11 0.21
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (29 bp):
AAAAATAAAATAAAAATAAAAAATAAAAC
Found at i:9121263 original size:41 final size:41
Alignment explanation
Indices: 9121185--9121264 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
9121175 TATATTAATA
* * *
9121185 AATACATAAGATAAAAATAAAAGAAAAATATATATAAAAAC
1 AATACATAAGATAAAAATAAAAGAAAAACAAAAATAAAAAC
9121226 AATA-ATAATGATAAAAATAAAA-ATAAAACAAAAATAAAA
1 AATACATAA-GATAAAAATAAAAGA-AAAACAAAAATAAAA
9121265 TAAAAATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 5 0.15
41 29 0.85
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.19
Consensus pattern (41 bp):
AATACATAAGATAAAAATAAAAGAAAAACAAAAATAAAAAC
Found at i:9121281 original size:41 final size:47
Alignment explanation
Indices: 9121195--9121288 Score: 122
Period size: 47 Copynumber: 2.1 Consensus size: 47
9121185 AATACATAAG
* *
9121195 ATAAAAATAAAAGAAAAATATATATAAAAACAATAATAATGATAAAA
1 ATAAAAATAAAACAAAAATATATATAAAAACAATAATAATAATAAAA
* * *
9121242 ATAAAAATAAAACAAAAATA-AAATAAAAATAA-AA-AATAAAAAAA
1 ATAAAAATAAAACAAAAATATATATAAAAACAATAATAATAATAAAA
9121286 ATA
1 ATA
9121289 GACTTACCTA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
44 11 0.26
45 2 0.05
46 10 0.24
47 19 0.45
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (47 bp):
ATAAAAATAAAACAAAAATATATATAAAAACAATAATAATAATAAAA
Found at i:9121584 original size:41 final size:42
Alignment explanation
Indices: 9121474--9121707 Score: 285
Period size: 41 Copynumber: 5.6 Consensus size: 42
9121464 CATAGGCTCA
* * * * *
9121474 ACGACTTTGGAAAAATAAATGGCTTCTCTAATCAGAGGCACC
1 ACGACTTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
* * *
9121516 ATGCCTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACC
1 ACGACTTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
9121558 ACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
1 ACGACTTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
** * *
9121599 ACGAC-TTTGAAAAGTAAATTGCTTTTCTACATAGAGGCACC
1 ACGACTTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
* * *
9121640 ACGACTTTTGGAAAGTAAATTACT-CTCTAAATAGAGGCACC
1 ACGACTTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
* * *
9121681 ATGACTTTTGGAAAGTAAATTACTCCT
1 ACGACTTTTGAAAAGTAAATTGCTCCT
9121708 TGACGATCAT
Statistics
Matches: 170, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
41 115 0.68
42 55 0.32
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.27
Consensus pattern (42 bp):
ACGACTTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
Found at i:9121658 original size:83 final size:82
Alignment explanation
Indices: 9121474--9121707 Score: 299
Period size: 83 Copynumber: 2.8 Consensus size: 82
9121464 CATAGGCTCA
* * * *
9121474 ACGACTTTGGAAAAATAAATGGCTTCTCTAATCAGAGGCACCATGCCTTTTGGAAAGTAAATTGC
1 ACGACTTTGG-AAAGTAAATTGC-TCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGC
9121539 TCCTCTAAACAGAGGCACC
64 TCCTCTAAACAGAGGCACC
* * *
9121558 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCT
1 ACGACTTTGGAAAGTAAATTGCT-CTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCT
** * *
9121622 TTTCTACATAGAGGCACC
65 CCTCTAAACAGAGGCACC
* * *
9121640 ACGACTTTTGGAAAGTAAATTACTCTCTAAATAGAGGCACCATGACTTTTGGAAAGTAAATTACT
1 ACGAC-TTTGGAAAGTAAATTGCTCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCT
9121705 CCT
65 CCT
9121708 TGACGATCAT
Statistics
Matches: 128, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
82 57 0.45
83 62 0.48
84 9 0.07
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.27
Consensus pattern (82 bp):
ACGACTTTGGAAAGTAAATTGCTCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCTC
CTCTAAACAGAGGCACC
Found at i:9121707 original size:124 final size:125
Alignment explanation
Indices: 9121474--9121707 Score: 339
Period size: 124 Copynumber: 1.9 Consensus size: 125
9121464 CATAGGCTCA
* * *
9121474 ACGACTTTGGAAAAATAAATGGCTTCTCTAATCAGAGGCACCATGCCTTTTGGAAAGTAAATTGC
1 ACGACTTTGGAAAAATAAATGGCTTCTCTAATCAGAGGCACCACGACTTTTGGAAAGTAAATTAC
*
9121539 TCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
66 TCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTACTCCTCTAAACAGAGGCACC
* * *
9121599 ACGACTTT-GAAAAGTAAATTGCTTTTCTACAT-AGAGGCACCACGACTTTTGGAAAGTAAATTA
1 ACGACTTTGGAAAAATAAATGGCTTCTCTA-ATCAGAGGCACCACGACTTTTGGAAAGTAAATTA
* * *
9121662 CT-CTCTAAATAGAGGCACCATGACTTTTGGAAAGTAAATTACTCCT
65 CTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTACTCCT
9121708 TGACGATCAT
Statistics
Matches: 97, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
123 20 0.21
124 67 0.69
125 10 0.10
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.27
Consensus pattern (125 bp):
ACGACTTTGGAAAAATAAATGGCTTCTCTAATCAGAGGCACCACGACTTTTGGAAAGTAAATTAC
TCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTACTCCTCTAAACAGAGGCACC
Found at i:9123642 original size:205 final size:205
Alignment explanation
Indices: 9123285--9123689 Score: 659
Period size: 205 Copynumber: 2.0 Consensus size: 205
9123275 TTTTTATGTT
* * *
9123285 CTTATTGGCTGCCTCAACTACCCCATTCATTTTTGGACGGTATGGTGTTGAGTTATGATGCCTGA
1 CTTATTGGCTGCCTCAACTACCCCATTCATTTTCGAAAGGTATGGTGTTGAGTTATGATGCCTGA
* *
9123350 TCTTGTATTGAGCACATATTTCTTGTATCATCTTACTATTTAGATTTTTAGCATTATCTAAAATA
66 TCTTGTATTGAGCACATATTTCTTGCATCATCTTACTATTTAGATTCTTAGCATTATCTAAAATA
* * * * *
9123415 ATTCTCTCCGAAAGCCCATATCTACATATGATCTTTCTTTTTATGAACTTGTAAACTACAGATCA
131 ATTCTCTCAGAAAGCCCATATCTACAGATGATCTCTCTCTTTATGAACTTGTAAACCACAGATCA
9123480 TGTCAACTGC
196 TGTCAACTGC
9123490 CTTATTGGCTGCCTCAACTACCCCATTCATTTTCGAAAGGTATGGTGTTGAGTTATGATGCCTGA
1 CTTATTGGCTGCCTCAACTACCCCATTCATTTTCGAAAGGTATGGTGTTGAGTTATGATGCCTGA
* *
9123555 TCTTGTATTGAGCACATATTTCTTGCATCATCTTACTATTTAGATTCTTGGCATTGTCTAAAATA
66 TCTTGTATTGAGCACATATTTCTTGCATCATCTTACTATTTAGATTCTTAGCATTATCTAAAATA
* *
9123620 ATTCTCTCTAG-AAGCTCATATCTACAGATGATCTCTCTCTTTATGAACTTGTAAACCATAGATC
131 ATTCTCTC-AGAAAGCCCATATCTACAGATGATCTCTCTCTTTATGAACTTGTAAACCACAGATC
*
9123684 GTGTCA
195 ATGTCA
9123690 CACTTACATA
Statistics
Matches: 184, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
205 183 0.99
206 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (205 bp):
CTTATTGGCTGCCTCAACTACCCCATTCATTTTCGAAAGGTATGGTGTTGAGTTATGATGCCTGA
TCTTGTATTGAGCACATATTTCTTGCATCATCTTACTATTTAGATTCTTAGCATTATCTAAAATA
ATTCTCTCAGAAAGCCCATATCTACAGATGATCTCTCTCTTTATGAACTTGTAAACCACAGATCA
TGTCAACTGC
Found at i:9127849 original size:15 final size:16
Alignment explanation
Indices: 9127816--9127853 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
9127806 ATTATTTCAT
9127816 CCTTCT-CCTTCTTTAG
1 CCTTCTCCCTTC-TTAG
9127832 CCTTCTCCCTTC-TAG
1 CCTTCTCCCTTCTTAG
9127847 CCTTCTC
1 CCTTCTC
9127854 TAACATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.48
16 6 0.29
17 5 0.24
ACGTcount: A:0.05, C:0.45, G:0.05, T:0.45
Consensus pattern (16 bp):
CCTTCTCCCTTCTTAG
Found at i:9133450 original size:55 final size:56
Alignment explanation
Indices: 9133335--9133597 Score: 419
Period size: 55 Copynumber: 4.7 Consensus size: 56
9133325 TTGTGCAAGA
9133335 AAAATTGATACTTTCAACTTTT-CTCAAAAATCTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTGAAAATTTATTTTTAAGG
*
9133391 AAAATTGATGCTTTCAACTTTTCCTCAAAAATTTTTTT-AAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTGAAAATTTATTTTTAAGG
9133446 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTG-AAATTTA-TTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTGAAAATTTATTTTTAAGG
9133500 AAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA--TTTTTTTGAAAATTTATTTTTAAGG
*
9133558 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTT-CCTCAAAA-ATTTTTTT
9133598 TGGATTTTAT
Statistics
Matches: 194, Mismatches: 3, Indels: 18
0.90 0.01 0.08
Matches are distributed among these distances:
54 39 0.20
55 59 0.30
56 34 0.18
57 17 0.09
58 37 0.19
59 7 0.04
60 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.46
Consensus pattern (56 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTGAAAATTTATTTTTAAGG
Found at i:9133656 original size:37 final size:34
Alignment explanation
Indices: 9133614--9133698 Score: 91
Period size: 37 Copynumber: 2.4 Consensus size: 34
9133604 TTATTTAAAG
* *
9133614 AAAATAAAATAATAAA-ACAAAATAAAAGTGAAAATA
1 AAAATAAAAAAATAAAGA-AAAATAAAA--AAAAATA
*
9133650 AAAAATAAAAAAATAAAGAAAAGTAAAAAAAAATA
1 AA-AATAAAAAAATAAAGAAAAATAAAAAAAAATA
*
9133685 AAAATAAAAGAATA
1 AAAATAAAAAAATA
9133699 TTAAATAAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
34 11 0.26
35 8 0.19
36 2 0.05
37 21 0.49
38 1 0.02
ACGTcount: A:0.79, C:0.01, G:0.06, T:0.14
Consensus pattern (34 bp):
AAAATAAAAAAATAAAGAAAAATAAAAAAAAATA
Found at i:9133688 original size:8 final size:8
Alignment explanation
Indices: 9133644--9133698 Score: 60
Period size: 8 Copynumber: 6.8 Consensus size: 8
9133634 AATAAAAGTG
9133644 AAAAT-AA
1 AAAATAAA
9133651 AAAATAAA
1 AAAATAAA
9133659 AAAATAAA
1 AAAATAAA
9133667 GAAAAGTAAA
1 -AAAA-TAAA
9133677 AAAA-AATA
1 AAAATAA-A
9133685 AAAATAAA
1 AAAATAAA
*
9133693 AGAATA
1 AAAATA
9133699 TTAAATAAAC
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
7 7 0.17
8 21 0.50
9 10 0.24
10 4 0.10
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.13
Consensus pattern (8 bp):
AAAATAAA
Found at i:9133703 original size:27 final size:28
Alignment explanation
Indices: 9133610--9133696 Score: 81
Period size: 28 Copynumber: 3.0 Consensus size: 28
9133600 GATTTTATTT
* *
9133610 AAAG-AAAATAAAATAATAAAACA-AAATA
1 AAAGTAAAAAAAAATAA-AAAA-ATAAAGA
9133638 AAAGTGAAAATAAAAAATAAAAAAATAAAGA
1 AAAGT--AAA-AAAAAATAAAAAAATAAAGA
*
9133669 AAAGTAAAAAAAAATAAAAATA-AAAGA
1 AAAGTAAAAAAAAATAAAAAAATAAAGA
9133696 A
1 A
9133697 TATTAAATAA
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
27 6 0.12
28 17 0.33
29 3 0.06
30 1 0.02
31 16 0.31
32 8 0.16
ACGTcount: A:0.79, C:0.01, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAGTAAAAAAAAATAAAAAAATAAAGA
Found at i:9134766 original size:40 final size:35
Alignment explanation
Indices: 9134716--9134820 Score: 97
Period size: 35 Copynumber: 3.0 Consensus size: 35
9134706 ACAGAAAGAA
* * * *
9134716 AAAAATAATAAT-AAGGATATATATATTAATAAATAC
1 AAAAATAAAAATAAAAGAAATATATA-T-ATAAAAAC
*
9134752 ATAAGATAAAAATAAAAGAAATATATATATAAAAAC
1 A-AAAATAAAAATAAAAGAAATATATATATAAAAAC
* * *
9134788 AAAAATAAAAATAAAACAAAAATA-AAATAAAAA
1 AAAAATAAAAATAAAAGAAATATATATATAAAAA
9134821 TGTAAAATAC
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
34 8 0.14
35 20 0.34
36 9 0.16
37 10 0.17
38 11 0.19
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.22
Consensus pattern (35 bp):
AAAAATAAAAATAAAAGAAATATATATATAAAAAC
Found at i:9134768 original size:6 final size:6
Alignment explanation
Indices: 9134757--9134849 Score: 59
Period size: 6 Copynumber: 15.5 Consensus size: 6
9134747 AATACATAAG
* * * * *
9134757 ATAAAA AT-AAA AGAAAT ATATAT ATAAAA ACAAAA ATAAAA AT-AAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
* *
9134803 ACAAAA AT-AAA ATAAAA ATGTAAAA TACAAAA ATTAAAA A-AAAA ATA
1 ATAAAA ATAAAA ATAAAA A--TAAAA -ATAAAA A-TAAAA ATAAAA ATA
9134850 GACTTACCTA
Statistics
Matches: 67, Mismatches: 12, Indels: 16
0.71 0.13 0.17
Matches are distributed among these distances:
5 18 0.27
6 34 0.51
7 9 0.13
8 5 0.07
9 1 0.01
ACGTcount: A:0.76, C:0.03, G:0.02, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:9134774 original size:28 final size:29
Alignment explanation
Indices: 9134743--9134797 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
9134733 TATATATATT
* *
9134743 AATAAATACAT-AAGATAAAAATAAAAGA
1 AATAAATACATAAAAACAAAAATAAAAGA
* *
9134771 AATATATATATAAAAACAAAAATAAAA
1 AATAAATACATAAAAACAAAAATAAAA
9134798 ATAAAACAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 9 0.41
29 13 0.59
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (29 bp):
AATAAATACATAAAAACAAAAATAAAAGA
Found at i:9134784 original size:36 final size:37
Alignment explanation
Indices: 9134716--9134803 Score: 101
Period size: 35 Copynumber: 2.4 Consensus size: 37
9134706 ACAGAAAGAA
* * * *
9134716 AAAAATAATAAT-AAGGATATATATATTAATAAATAC
1 AAAAATAAAAATAAAAGAAATATATATTAATAAAAAC
*
9134752 ATAAGATAAAAATAAAAGAAATATATA-T-ATAAAAAC
1 A-AAAATAAAAATAAAAGAAATATATATTAATAAAAAC
9134788 AAAAATAAAAATAAAA
1 AAAAATAAAAATAAAA
9134804 CAAAAATAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
35 14 0.32
36 9 0.20
37 10 0.23
38 11 0.25
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (37 bp):
AAAAATAAAAATAAAAGAAATATATATTAATAAAAAC
Found at i:9134803 original size:17 final size:17
Alignment explanation
Indices: 9134743--9134819 Score: 75
Period size: 17 Copynumber: 4.4 Consensus size: 17
9134733 TATATATATT
*
9134743 AATAAATACATAAGATAAA
1 AATAAA-ACA-AAAATAAA
* * *
9134762 AATAAAAGAAATATATA
1 AATAAAACAAAAATAAA
*
9134779 TATAAAAACAAAAATAAA
1 AAT-AAAACAAAAATAAA
9134797 AATAAAACAAAAAT-AA
1 AATAAAACAAAAATAAA
9134813 AATAAAA
1 AATAAAA
9134820 ATGTAAAATA
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
16 9 0.18
17 19 0.39
18 15 0.31
19 6 0.12
ACGTcount: A:0.75, C:0.04, G:0.03, T:0.18
Consensus pattern (17 bp):
AATAAAACAAAAATAAA
Found at i:9134828 original size:35 final size:35
Alignment explanation
Indices: 9134738--9134849 Score: 91
Period size: 35 Copynumber: 3.1 Consensus size: 35
9134728 AAGGATATAT
* * * * *
9134738 ATATTAATAAATACATAAGATAAAAATAAAAGAAAT
1 ATATAAATAAAAACA-AAAATAAAAATAAAAAAAAA
* *
9134774 ATATATATAAAAACAAAAATAAAAATAAAACAAAA
1 ATATAAATAAAAACAAAAATAAAAATAAAAAAAAA
* *
9134809 ATA-AAATAAAAATGTAAAATACAAAAATTAAAAAAAAA
1 ATATAAATAAAAA--CAAAA-ATAAAAA-TAAAAAAAAA
9134847 ATA
1 ATA
9134850 GACTTACCTA
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
34 8 0.13
35 20 0.32
36 16 0.26
37 6 0.10
38 12 0.19
ACGTcount: A:0.73, C:0.04, G:0.03, T:0.21
Consensus pattern (35 bp):
ATATAAATAAAAACAAAAATAAAAATAAAAAAAAA
Found at i:9136512 original size:9 final size:8
Alignment explanation
Indices: 9136469--9136528 Score: 56
Period size: 9 Copynumber: 7.6 Consensus size: 8
9136459 ATGGATAAAA
9136469 AAAAAGAG
1 AAAAAGAG
9136477 AAAAAAGAG
1 -AAAAAGAG
9136486 AAAAAG-G
1 AAAAAGAG
*
9136493 -GAAAGAG
1 AAAAAGAG
9136500 AAAAAGAAG
1 AAAAAG-AG
9136509 AAAAA-A-
1 AAAAAGAG
9136515 AAAAGAGAG
1 AAAA-AGAG
9136524 AAAAA
1 AAAAA
9136529 TGAAAAATGA
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
6 8 0.19
7 4 0.09
8 12 0.28
9 19 0.44
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (8 bp):
AAAAAGAG
Found at i:9136517 original size:14 final size:14
Alignment explanation
Indices: 9136465--9136528 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 14
9136455 ATTAATGGAT
9136465 AAAAAAAAAGAGAA-
1 AAAAAAAAA-AGAAG
*
9136479 AAAAGAGAAAAAG-GG
1 AAAA-A-AAAAAGAAG
*
9136494 AAAGAGAAAAAGAAG
1 AAA-AAAAAAAGAAG
9136509 AAAAAAAAAAGAGAG
1 AAAAAAAAAAGA-AG
9136524 AAAAA
1 AAAAA
9136529 TGAAAAATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
14 18 0.45
15 17 0.43
16 5 0.12
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAGAAG
Found at i:9136519 original size:22 final size:21
Alignment explanation
Indices: 9136465--9136535 Score: 79
Period size: 23 Copynumber: 3.2 Consensus size: 21
9136455 ATTAATGGAT
9136465 AAAAAAAAAGAGAAAAAAGAGA
1 AAAAAAAAAGAGAAAAAA-AGA
**
9136487 AAAAGGGAAAGAGAAAAAGAAGA
1 AAAA-AAAAAGAGAAAAA-AAGA
*
9136510 AAAAAAAAAGAGAGAAAAATGA
1 AAAAAAAAAGAGA-AAAAAAGA
9136532 AAAA
1 AAAA
9136536 TGAAAATGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
22 18 0.44
23 22 0.54
24 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.01
Consensus pattern (21 bp):
AAAAAAAAAGAGAAAAAAAGA
Found at i:9136523 original size:24 final size:24
Alignment explanation
Indices: 9136465--9136551 Score: 83
Period size: 24 Copynumber: 3.8 Consensus size: 24
9136455 ATTAATGGAT
9136465 AAAAAAAAAGAGA-AAAAAG-AGA
1 AAAAAAAAAGAGAGAAAAAGAAGA
***
9136487 AAAAGGGAA-AGAGAAAAAGAAGA
1 AAAAAAAAAGAGAGAAAAAGAAGA
9136510 AAAAAAAAAGAGAGAAAAATGAA-A
1 AAAAAAAAAGAGAGAAAAA-GAAGA
** *
9136534 AATGAAAATGAGAGAAAA
1 AAAAAAAAAGAGAGAAAA
9136552 CAAAGACTCA
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
21 3 0.06
22 12 0.23
23 9 0.17
24 25 0.48
25 3 0.06
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (24 bp):
AAAAAAAAAGAGAGAAAAAGAAGA
Found at i:9136541 original size:38 final size:37
Alignment explanation
Indices: 9136477--9136551 Score: 89
Period size: 36 Copynumber: 2.0 Consensus size: 37
9136467 AAAAAAAGAG
* *
9136477 AAAAAAGAGAAAAAGGGAAAGAGAAAAAGA-AGAAAA
1 AAAAAAGAGAAAAAAGGAAAAAGAAAAAGAGAGAAAA
* *
9136513 AAAAAAGAGAGAAAAATGAAAAATGAAAATGAGAGAAAA
1 AAAAAAGAGA-AAAAAGGAAAAA-GAAAAAGAGAGAAAA
9136552 CAAAGACTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 10 0.31
37 9 0.28
38 7 0.22
39 6 0.19
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.04
Consensus pattern (37 bp):
AAAAAAGAGAAAAAAGGAAAAAGAAAAAGAGAGAAAA
Found at i:9137679 original size:21 final size:21
Alignment explanation
Indices: 9137653--9137708 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
9137643 ATGAAGTTTT
* *
9137653 AAATGAGAATCTTTTAGTCTC
1 AAATGAGAATCTTTAAGACTC
9137674 AAATGAGAATCTTTAAGACTC
1 AAATGAGAATCTTTAAGACTC
9137695 AAATGAGAATCTTT
1 AAATGAGAATCTTT
9137709 GAGATGTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (21 bp):
AAATGAGAATCTTTAAGACTC
Found at i:9137866 original size:23 final size:23
Alignment explanation
Indices: 9137828--9137877 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
9137818 GGATGTAAGA
* *
9137828 CTTGCAATTTGCAAATGTGAA-T
1 CTTGAAATTTGCAAATCTGAATT
9137850 CTTGAAATCTTGCAAATCTGAATT
1 CTTGAAAT-TTGCAAATCTGAATT
9137874 CTTG
1 CTTG
9137878 CATATCTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 7 0.29
23 12 0.50
24 5 0.21
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (23 bp):
CTTGAAATTTGCAAATCTGAATT
Found at i:9137876 original size:16 final size:16
Alignment explanation
Indices: 9137847--9137889 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
9137837 TGCAAATGTG
9137847 AATCTTGAAATCTTGCA
1 AATC-TGAAATCTTGCA
*
9137864 AATCTGAATTCTTGCA
1 AATCTGAAATCTTGCA
*
9137880 TATCTGAAAT
1 AATCTGAAAT
9137890 TTTGAGGATG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (16 bp):
AATCTGAAATCTTGCA
Found at i:9137903 original size:14 final size:14
Alignment explanation
Indices: 9137884--9137919 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
9137874 CTTGCATATC
*
9137884 TGAAATTTTGAGGA
1 TGAAATTTTGAGAA
9137898 TGAAATTTTGAGAA
1 TGAAATTTTGAGAA
*
9137912 TAAAATTT
1 TGAAATTT
9137920 CAATGAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (14 bp):
TGAAATTTTGAGAA
Found at i:9138129 original size:42 final size:41
Alignment explanation
Indices: 9138055--9138199 Score: 218
Period size: 42 Copynumber: 3.5 Consensus size: 41
9138045 GATCATCAAT
* *
9138055 GAGCATTTTATTTTACAAAGTTATGGTGCCTCTGTTTAGAG
1 GAGCATTTTATTTTCCAAAGTTATGGCGCCTCTGTTTAGAG
* *
9138096 GAGCATTTTATTTTTCCAAAGTTGTGGCACCTCTGTTTAGAG
1 GAGCATTTTA-TTTTCCAAAGTTATGGCGCCTCTGTTTAGAG
9138138 GAGCATTTTATTTTCCAAAAGTTATGGCGCCTCTGTTTAGAG
1 GAGCATTTTATTTTCC-AAAGTTATGGCGCCTCTGTTTAGAG
*
9138180 GAGCAATTTATTTTTCCAAA
1 GAGCATTTTA-TTTTCCAAA
9138200 AGTATGAGCA
Statistics
Matches: 94, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
41 16 0.17
42 72 0.77
43 6 0.06
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (41 bp):
GAGCATTTTATTTTCCAAAGTTATGGCGCCTCTGTTTAGAG
Found at i:9138218 original size:24 final size:25
Alignment explanation
Indices: 9138180--9138226 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
9138170 CTGTTTAGAG
9138180 GAGCAATTTATTTTTCCAAAAGTAT
1 GAGCAATTTATTTTTCCAAAAGTAT
*
9138205 GAGCATTTTATTTTT-CAAAAGT
1 GAGCAATTTATTTTTCCAAAAGT
9138227 TGTGGTTCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.43
Consensus pattern (25 bp):
GAGCAATTTATTTTTCCAAAAGTAT
Found at i:9138246 original size:67 final size:67
Alignment explanation
Indices: 9138138--9138266 Score: 222
Period size: 67 Copynumber: 1.9 Consensus size: 67
9138128 CTGTTTAGAG
9138138 GAGCATTTTATTTTCCAAAAGTTATGGCGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAAGT
1 GAGCATTTTATTTTCCAAAAGTTATGGCGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAAGT
9138203 AT
66 AT
* * **
9138205 GAGCATTTTATTTTTCAAAAGTTGTGGTTCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAA
1 GAGCATTTTATTTTCCAAAAGTTATGGCGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAA
9138267 GTTGTGGTGC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (67 bp):
GAGCATTTTATTTTCCAAAAGTTATGGCGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAAGT
AT
Found at i:9138268 original size:42 final size:42
Alignment explanation
Indices: 9138205--9138460 Score: 293
Period size: 42 Copynumber: 6.1 Consensus size: 42
9138195 CCAAAAGTAT
* * *
9138205 GAGCATTTTATTTTTCAAAAGTTGTGGTTCCTCTGTTTAGAG
1 GAGCAATTTATTTTTCCAAAGTTGTGGTGCCTCTGTTTAGAG
* *
9138247 GAGCAATTTATTTTTCCAAAGTTGTGGTGCCTCTGTTTAAAA
1 GAGCAATTTATTTTTCCAAAGTTGTGGTGCCTCTGTTTAGAG
* * *
9138289 GAACATTTTATTTTT-CAAATGTTGTGGTGCCTCTATTTAGAG
1 GAGCAATTTATTTTTCCAAA-GTTGTGGTGCCTCTGTTTAGAG
* * *
9138331 GAGCAATTT-TTTTTTCAAGGTTGTGGTGCTTCTGTTTAGAG
1 GAGCAATTTATTTTTCCAAAGTTGTGGTGCCTCTGTTTAGAG
** *
9138372 GAGCAATTTATTTTTTTAAAGTTGTGGTGCCTCTATTTAGAG
1 GAGCAATTTATTTTTCCAAAGTTGTGGTGCCTCTGTTTAGAG
* ** * *
9138414 GAGCTTAATTTA-TTTTCGAAAGTCATTGAGCCTCTGTTTAGAG
1 GAGC--AATTTATTTTTCCAAAGTTGTGGTGCCTCTGTTTAGAG
9138457 GAGC
1 GAGC
9138461 TTTGTTTACT
Statistics
Matches: 183, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
41 38 0.21
42 111 0.61
43 28 0.15
44 6 0.03
ACGTcount: A:0.23, C:0.12, G:0.22, T:0.43
Consensus pattern (42 bp):
GAGCAATTTATTTTTCCAAAGTTGTGGTGCCTCTGTTTAGAG
Found at i:9138271 original size:151 final size:150
Alignment explanation
Indices: 9138053--9138346 Score: 444
Period size: 151 Copynumber: 2.0 Consensus size: 150
9138043 ATGATCATCA
*
9138053 ATGAGCATTTTATTTTACAAAGTTATGGTGCCTCTGTTTAGAGGAGCATTTTATTTTTCCAAAGT
1 ATGAGCATTTTATTTTACAAAGTTATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGT
* * * *
9138118 TGTGGCACCTCTGTTTAGAGGAGCATTTTATTTTCCAAAAGTTATGGCGCCTCTGTTTAGAGGAG
66 TGTGGCACCTCTGTTTAAAAGAACATTTTATTTTCCAAAAGTTATGGCGCCTCTATTTAGAGGAG
9138183 CAATTTATTTTTCCAAAAGT
131 CAATTTATTTTTCCAAAAGT
* * *
9138203 ATGAGCATTTTATTTTTCAAAAGTTGTGGTTCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAG
1 ATGAGCATTTTATTTTAC-AAAGTTATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAG
** * * * *
9138268 TTGTGGTGCCTCTGTTTAAAAGAACATTTTATTTTTCAAATGTTGTGGTGCCTCTATTTAGAGGA
65 TTGTGGCACCTCTGTTTAAAAGAACATTTTATTTTCCAAAAGTTATGGCGCCTCTATTTAGAGGA
*
9138333 GCAATTTTTTTTTC
130 GCAATTTATTTTTC
9138347 AAGGTTGTGG
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
150 17 0.13
151 111 0.87
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.43
Consensus pattern (150 bp):
ATGAGCATTTTATTTTACAAAGTTATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGT
TGTGGCACCTCTGTTTAAAAGAACATTTTATTTTCCAAAAGTTATGGCGCCTCTATTTAGAGGAG
CAATTTATTTTTCCAAAAGT
Found at i:9138299 original size:109 final size:109
Alignment explanation
Indices: 9138096--9138304 Score: 312
Period size: 109 Copynumber: 1.9 Consensus size: 109
9138086 CTGTTTAGAG
* *
9138096 GAGCATTTTATTTTTCCAAAGTTGTGGCACCTCTGTTTAGAGGAGCATTTTATTTTCCAAAAGTT
1 GAGCATTTTATTTTTCAAAAGTTGTGGCACCTCTGTTTAGAGGAGCAATTTATTTTCCAAAAGTT
* * *
9138161 ATGGCGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAAGTAT
66 ATGGCGCCTCTGTTTAAAAGAACAATTTATTTTTCCAAAAGTAT
**
9138205 GAGCATTTTATTTTTCAAAAGTTGTGGTTCCTCTGTTTAGAGGAGCAATTTATTTTTCC-AAAGT
1 GAGCATTTTATTTTTCAAAAGTTGTGGCACCTCTGTTTAGAGGAGCAATTTA-TTTTCCAAAAGT
* * *
9138269 TGTGGTGCCTCTGTTTAAAAGAACATTTTATTTTTC
65 TATGGCGCCTCTGTTTAAAAGAACAATTTATTTTTC
9138305 AAATGTTGTG
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
109 83 0.93
110 6 0.07
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (109 bp):
GAGCATTTTATTTTTCAAAAGTTGTGGCACCTCTGTTTAGAGGAGCAATTTATTTTCCAAAAGTT
ATGGCGCCTCTGTTTAAAAGAACAATTTATTTTTCCAAAAGTAT
Found at i:9138396 original size:83 final size:84
Alignment explanation
Indices: 9138205--9138429 Score: 308
Period size: 83 Copynumber: 2.7 Consensus size: 84
9138195 CCAAAAGTAT
* * *
9138205 GAGCATTTTATTTTTCAAAAGTTGTGGTTCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTT
1 GAGCATTTTATTTTTTAAAAGTTGTGGTGCCTCTATTTAGAGGAGCAATTTATTTTTCCAAAGTT
9138270 GTGGTGCCTCTGTTTAAAA
66 GTGGTGCCTCTGTTTAAAA
* * * * *
9138289 GAACATTTTATTTTTCAAATGTTGTGGTGCCTCTATTTAGAGGAGCAATTT-TTTTTTCAAGGTT
1 GAGCATTTTATTTTTTAAAAGTTGTGGTGCCTCTATTTAGAGGAGCAATTTATTTTTCCAAAGTT
* * *
9138353 GTGGTGCTTCTGTTTAGAG
66 GTGGTGCCTCTGTTTAAAA
* *
9138372 GAGCAATTTATTTTTTTAAAGTTGTGGTGCCTCTATTTAGAGGAGCTTAATTTATTTT
1 GAGCATTTTATTTTTTAAAAGTTGTGGTGCCTCTATTTAGAGGAGC--AATTTATTTT
9138430 CGAAAGTCAT
Statistics
Matches: 124, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
83 68 0.55
84 47 0.38
85 5 0.04
86 4 0.03
ACGTcount: A:0.23, C:0.11, G:0.21, T:0.45
Consensus pattern (84 bp):
GAGCATTTTATTTTTTAAAAGTTGTGGTGCCTCTATTTAGAGGAGCAATTTATTTTTCCAAAGTT
GTGGTGCCTCTGTTTAAAA
Found at i:9139485 original size:12 final size:12
Alignment explanation
Indices: 9139432--9139485 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
9139422 TTTTTTAGGG
9139432 TTTTTTTAGTAT
1 TTTTTTTAGTAT
* *
9139444 TTTATTTATTAT
1 TTTTTTTAGTAT
* *
9139456 TCTTTTATTTGTGT
1 T-TTTT-TTAGTAT
9139470 TTTTTTTAGTAT
1 TTTTTTTAGTAT
9139482 TTTT
1 TTTT
9139486 GCATGATTAA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
12 20 0.62
13 7 0.22
14 5 0.16
ACGTcount: A:0.15, C:0.02, G:0.07, T:0.76
Consensus pattern (12 bp):
TTTTTTTAGTAT
Found at i:9144020 original size:20 final size:20
Alignment explanation
Indices: 9143995--9144032 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
9143985 AGGGTATCGG
9143995 AAAATTATTCAAATTTTTAC
1 AAAATTATTCAAATTTTTAC
*
9144015 AAAATTATTCTAATTTTT
1 AAAATTATTCAAATTTTT
9144033 CTTGAGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (20 bp):
AAAATTATTCAAATTTTTAC
Found at i:9145195 original size:18 final size:18
Alignment explanation
Indices: 9145169--9145204 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
9145159 TGATCAATCC
* *
9145169 ATGAGGCATTCATGATGA
1 ATGAAGCATTAATGATGA
9145187 ATGAAGCATTAATGATGA
1 ATGAAGCATTAATGATGA
9145205 TTCTAGCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (18 bp):
ATGAAGCATTAATGATGA
Found at i:9149847 original size:15 final size:15
Alignment explanation
Indices: 9149819--9149860 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
9149809 CAAATTAAAC
9149819 ATTTAGTTAA-TTTTT
1 ATTTA-TTAATTTTTT
9149834 ATTTATTAATTTTTT
1 ATTTATTAATTTTTT
*
9149849 ATATTTTTAATT
1 AT-TTATTAATT
9149861 ATTATTCATC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 12 0.50
16 8 0.33
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (15 bp):
ATTTATTAATTTTTT
Found at i:9155453 original size:12 final size:12
Alignment explanation
Indices: 9155432--9155461 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
9155422 GTCATAGCAA
9155432 AAAAAAAAAAAG
1 AAAAAAAAAAAG
*
9155444 AAAAAGAAAAAG
1 AAAAAAAAAAAG
9155456 AAAAAA
1 AAAAAA
9155462 GATCAATTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:9156295 original size:10 final size:10
Alignment explanation
Indices: 9156280--9156304 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
9156270 AGCATAACTA
9156280 TTCAAATTAT
1 TTCAAATTAT
9156290 TTCAAATTAT
1 TTCAAATTAT
9156300 TTCAA
1 TTCAA
9156305 TACATAGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (10 bp):
TTCAAATTAT
Found at i:9163820 original size:14 final size:14
Alignment explanation
Indices: 9163801--9163828 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9163791 TTTTGAAATG
9163801 AAAAATTATTTCAA
1 AAAAATTATTTCAA
9163815 AAAAATTATTTCAA
1 AAAAATTATTTCAA
9163829 TGACTCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (14 bp):
AAAAATTATTTCAA
Found at i:9166334 original size:43 final size:43
Alignment explanation
Indices: 9166273--9166356 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
9166263 CATGTCTTCA
*
9166273 TACATGTTATACTTTAATGGTCATGTCAGCATTAATTTTATTG
1 TACATGTTATACTTTAATGGTCATGTCAACATTAATTTTATTG
*
9166316 TACATGTTATACTTTAATGGTCGTGTCAACATTAATTTTAT
1 TACATGTTATACTTTAATGGTCATGTCAACATTAATTTTAT
9166357 ATGTTAATTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (43 bp):
TACATGTTATACTTTAATGGTCATGTCAACATTAATTTTATTG
Found at i:9169387 original size:61 final size:60
Alignment explanation
Indices: 9169231--9169435 Score: 211
Period size: 60 Copynumber: 3.3 Consensus size: 60
9169221 TTGAATGGGC
*
9169231 AAAAATGCCTTGAATAATCCCCTTCAATGTTTTTACTAGGGGATTATTCAAGGCATATTTGGCC-
1 AAAAATGCCTTGAATAAT-CCCTTCAAT-TTTTT--T-GGGGATTATTCAAGGCAT-TTTTGCCT
9169295 -
60 A
* *
9169295 AAATATGCCTTGAATAATCCTTTCCAAATTTTTTTGGGGATTATTCAAGGCATTTTTGCCTA
1 AAAAATGCCTTGAATAATCCCTT-C-AATTTTTTTGGGGATTATTCAAGGCATTTTTGCCTA
* * * * *
9169357 AAAAATGTCTTGAATAATCACCTCTC-ATTTTTTT-TGGATTATTCATGGCGTTTTTGGCTA
1 AAAAATGCCTTGAATAATC-CCT-TCAATTTTTTTGGGGATTATTCAAGGCATTTTTGCCTA
*
9169417 GAAAATGCCTTGAATAATC
1 AAAAATGCCTTGAATAATC
9169436 TTTTAAACCC
Statistics
Matches: 123, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
60 45 0.37
61 26 0.21
62 18 0.15
63 7 0.06
64 24 0.20
65 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.39
Consensus pattern (60 bp):
AAAAATGCCTTGAATAATCCCTTCAATTTTTTTGGGGATTATTCAAGGCATTTTTGCCTA
Found at i:9169631 original size:61 final size:63
Alignment explanation
Indices: 9169522--9169666 Score: 163
Period size: 61 Copynumber: 2.3 Consensus size: 63
9169512 AAAATAATTG
* * * * *
9169522 GCCAAAAACGTCTTGAATAA-CCCCTTATAAAAAATTTAATGAGGTTATTCAAGGCGTTTTT-
1 GCCAAAAACGCCTTGAATAATCACCTCATAAAAAATTGAATGAGATTATTCAAGGCGTTTTTA
* * *
9169583 GCCAAAAACACCTTGAATAATCACCTCATAAAAAA-TGAAGTG-GATTATTGAAGGTGTTTTTA
1 GCCAAAAACGCCTTGAATAATCACCTCATAAAAAATTGAA-TGAGATTATTCAAGGCGTTTTTA
* *
9169645 GCCATAAATGCCTTGAATAATC
1 GCCAAAAACGCCTTGAATAATC
9169667 CCATTAAATT
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
61 37 0.53
62 33 0.47
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (63 bp):
GCCAAAAACGCCTTGAATAATCACCTCATAAAAAATTGAATGAGATTATTCAAGGCGTTTTTA
Found at i:9175066 original size:158 final size:157
Alignment explanation
Indices: 9174864--9175469 Score: 730
Period size: 158 Copynumber: 3.8 Consensus size: 157
9174854 TGATAAGATC
* * * *
9174864 GACTTTGTGAAAGGTGAAAACTATTACATATTTTG-TTTGATGATTTTGATTGTATATTGTGATT
1 GACTTTGTG-AAGGTGAAAACTATTACGTATTTTGCTTT-ATGATTCTGGTTGTGTATTGTGATT
* * * * * *
9174928 GTTGATGAAGTAGATAGTATAGTAATTAAAAGACTAAGCATTGCAGGATGAGTGGTATTGAAGTA
64 GTTGATGAAATAGATAATATAGTAATTGAAAGACTAAACATTGCAGGATGAATGGTATTGAACTA
9174993 TATAGTGTTTTGTGTTTATTGAGATACAAT
129 TATAGTGTTTTGTGTTTATTGAGAT-CAAT
* * *
9175023 GACTTTGTGAAGGTGAAAACTATTGCGTATTTTACTTTATGATTCTGGTTGTGCATTGTGATTGT
1 GACTTTGTGAAGGTGAAAACTATTACGTATTTTGCTTTATGATTCTGGTTGTGTATTGTGATTGT
* * ** * * *
9175088 TGATGAAGTAGATAATATAGTAATTGAAAGACTTAACATTATAAGACGAATGATATTGAACTATA
66 TGATGAAATAGATAATATAGTAATTGAAAGACTAAACATTGCAGGATGAATGGTATTGAACTATA
* * *
9175153 TAGTGTTTAGTGCTTATTCAGATCAAT
131 TAGTGTTTTGTGTTTATTGAGATCAAT
* ** *
9175180 GACTTTGTGAA-GTTAAAACTATTGTGTATTTTGCTTTATGATTCTGGTTGTGTATTGTGATTAT
1 GACTTTGTGAAGGTGAAAACTATTACGTATTTTGCTTTATGATTCTGGTTGTGTATTGTGATTGT
* * *
9175244 TGATGAAATAAATAATGTAGTAATTGAAAGAGTAAACATTGCAGGATGAATGGTAATGAACATTG
66 TGATGAAATAGATAATATAGTAATTGAAAGACTAAACATTGCAGGATGAATGG---T----ATTG
* *
9175309 AACTATATAGTGTTTTGTGCTATATTGAGATGTAAT
124 AACTATATAGTGTTTTGTG-TTTATTGAGAT-CAAT
* * * * *
9175345 GACTTTGTGAAGATGAAAACTATTATGTATTTTGTTTTGTGATTTTGGTTGTGTATTGTGATTGT
1 GACTTTGTGAAGGTGAAAACTATTACGTATTTTGCTTTATGATTCTGGTTGTGTATTGTGATTGT
* * *
9175410 TGATGAAATAGATAATGTAGTAATTGAAAGCCTAAACATTGTAGGATGAATGGTATTGAA
66 TGATGAAATAGATAATATAGTAATTGAAAGACTAAACATTGCAGGATGAATGGTATTGAA
9175470 TTGTGTCATT
Statistics
Matches: 384, Mismatches: 52, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
156 91 0.24
157 15 0.04
158 119 0.31
159 19 0.05
163 23 0.06
164 8 0.02
165 14 0.04
166 95 0.25
ACGTcount: A:0.32, C:0.06, G:0.22, T:0.40
Consensus pattern (157 bp):
GACTTTGTGAAGGTGAAAACTATTACGTATTTTGCTTTATGATTCTGGTTGTGTATTGTGATTGT
TGATGAAATAGATAATATAGTAATTGAAAGACTAAACATTGCAGGATGAATGGTATTGAACTATA
TAGTGTTTTGTGTTTATTGAGATCAAT
Found at i:9175469 original size:322 final size:316
Alignment explanation
Indices: 9174864--9175469 Score: 786
Period size: 322 Copynumber: 1.9 Consensus size: 316
9174854 TGATAAGATC
* *
9174864 GACTTTGTGAAAGGTGAAAACTATTACATATTTTGTTTGATGATTTTGATTGTATATTGTGATTG
1 GACTTTGTGAAAGGTGAAAACTATTACATATTTTGTTTGATGATTCTGATTGTATATTGTGATTA
* * * * * *
9174929 TTGATGAAGTAGATAGTATAGTAATTAAAAGACTAAGCATTGCAGGATGAGTGGTATTGAAGTAT
66 TTGATGAAATAAATAATATAGTAATTAAAAGACTAAACATTGCAGGATGAATGGTATTGAACTAT
* * *
9174994 ATAGTGTTTTGTGTTTATTGAGATACAATGACTTTGTGAAGGTGAAAACTATTGCGTATTTTACT
131 ATAGTGTTTTGTGTATATTGAGATACAATGACTTTGTGAAGATGAAAACTATTACGTATTTTACT
* *
9175059 TTATGATTCTGGTTGTGCATTGTGATTGTTGATGAAGTAGATAATATAGTAATTGAAAGACTTAA
196 TTATGATTCTGGTTGTGCATTGTGATTGTTGATGAAATAGATAATATAGTAATTGAAAGACTAAA
9175124 CATTATAAGACGAATGATATTGAACTATATAGTGTTTAGTGCTTATTCAGATCAAT
261 CATTATAAGACGAATGATATTGAACTATATAGTGTTTAGTGCTTATTCAGATCAAT
* *** * *
9175180 GACTTTGTG-AA-GTTAAAACTATTGTGTATTTTGCTTT-ATGATTCTGGTTGTGTATTGTGATT
1 GACTTTGTGAAAGGTGAAAACTATTACATATTTTG-TTTGATGATTCTGATTGTATATTGTGATT
* * *
9175242 ATTGATGAAATAAATAATGTAGTAATTGAAAGAGTAAACATTGCAGGATGAATGGTAATGAACAT
65 ATTGATGAAATAAATAATATAGTAATTAAAAGACTAAACATTGCAGGATGAATGG---T----AT
** *
9175307 TGAACTATATAGTGTTTTGTGCTATATTGAGATGTAATGACTTTGTGAAGATGAAAACTATTATG
123 TGAACTATATAGTGTTTTGTG-TATATTGAGATACAATGACTTTGTGAAGATGAAAACTATTACG
** * * * *
9175372 TATTTTGTTTTGTGATTTTGGTTGTGTATTGTGATTGTTGATGAAATAGATAATGTAGTAATTGA
187 TATTTTACTTTATGATTCTGGTTGTGCATTGTGATTGTTGATGAAATAGATAATATAGTAATTGA
* * * * *
9175437 AAGCCTAAACATTGTAGGATGAATGGTATTGAA
252 AAGACTAAACATTATAAGACGAATGATATTGAA
9175470 TTGTGTCATT
Statistics
Matches: 245, Mismatches: 36, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
314 86 0.35
315 5 0.02
316 9 0.04
317 1 0.00
321 22 0.09
322 122 0.50
ACGTcount: A:0.32, C:0.06, G:0.22, T:0.40
Consensus pattern (316 bp):
GACTTTGTGAAAGGTGAAAACTATTACATATTTTGTTTGATGATTCTGATTGTATATTGTGATTA
TTGATGAAATAAATAATATAGTAATTAAAAGACTAAACATTGCAGGATGAATGGTATTGAACTAT
ATAGTGTTTTGTGTATATTGAGATACAATGACTTTGTGAAGATGAAAACTATTACGTATTTTACT
TTATGATTCTGGTTGTGCATTGTGATTGTTGATGAAATAGATAATATAGTAATTGAAAGACTAAA
CATTATAAGACGAATGATATTGAACTATATAGTGTTTAGTGCTTATTCAGATCAAT
Found at i:9175991 original size:21 final size:21
Alignment explanation
Indices: 9175965--9176010 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
9175955 TTTTGAGGAC
*
9175965 TTTATGGATGTTATAAATATT
1 TTTATGGATATTATAAATATT
* *
9175986 TTTATGGATATTATGAATTTT
1 TTTATGGATATTATAAATATT
9176007 TTTA
1 TTTA
9176011 GTATTATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (21 bp):
TTTATGGATATTATAAATATT
Found at i:9177464 original size:33 final size:33
Alignment explanation
Indices: 9177427--9177520 Score: 116
Period size: 33 Copynumber: 2.8 Consensus size: 33
9177417 TAGAGGTTGG
* * * *
9177427 AAAATTAAATGACTTGGTCTTAAGCAAAGATGA
1 AAAATGAAATGACTTGGACTTAACCAAAGATAA
* *
9177460 AAAATGAAATGACTTGGACTTAACCGAAGTTAA
1 AAAATGAAATGACTTGGACTTAACCAAAGATAA
* *
9177493 AAAATGATATGACTTGGACTTAGCCAAA
1 AAAATGAAATGACTTGGACTTAACCAAA
9177521 TTCAAAAAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.26
Consensus pattern (33 bp):
AAAATGAAATGACTTGGACTTAACCAAAGATAA
Found at i:9177528 original size:33 final size:33
Alignment explanation
Indices: 9177459--9177630 Score: 150
Period size: 33 Copynumber: 5.2 Consensus size: 33
9177449 AGCAAAGATG
* * * *
9177459 AAAAATGAAATGACTTGGACTTAACCGAAGTTA
1 AAAAATGATATGACTTGGACTTAGCCAAAGTCA
*
9177492 AAAAATGATATGACTTGGACTTAGCCAAATTCA
1 AAAAATGATATGACTTGGACTTAGCCAAAGTCA
* * **
9177525 AAAAATAATATGA-TTGGTCTTAGCTGAAGTCA
1 AAAAATGATATGACTTGGACTTAGCCAAAGTCA
* * * * * *
9177557 GAAAATAAAATAACTTAGATTTAGCCAAAGTCA
1 AAAAATGATATGACTTGGACTTAGCCAAAGTCA
* * * *
9177590 AAAAAAGATATGACTT-AATCTTAGTCGAAGTCA
1 AAAAATGATATGACTTGGA-CTTAGCCAAAGTCA
9177623 AAAAATGA
1 AAAAATGA
9177631 AATCAAAAGA
Statistics
Matches: 109, Mismatches: 28, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
32 26 0.24
33 83 0.76
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.26
Consensus pattern (33 bp):
AAAAATGATATGACTTGGACTTAGCCAAAGTCA
Found at i:9179257 original size:13 final size:13
Alignment explanation
Indices: 9179239--9179278 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
9179229 CATTTTGCCC
9179239 CATTTCTCATTTT
1 CATTTCTCATTTT
9179252 CATTTC-C-TTTT
1 CATTTCTCATTTT
9179263 CATTT-TCACTTTT
1 CATTTCTCA-TTTT
9179276 CAT
1 CAT
9179279 CTCATTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 10 0.42
12 1 0.04
13 13 0.54
ACGTcount: A:0.15, C:0.25, G:0.00, T:0.60
Consensus pattern (13 bp):
CATTTCTCATTTT
Found at i:9181885 original size:4 final size:4
Alignment explanation
Indices: 9181869--9181911 Score: 61
Period size: 4 Copynumber: 11.0 Consensus size: 4
9181859 ATCATGATTG
* *
9181869 AAAT AAA- AAAT AAAT AAAT GAAT AAAC AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
9181912 TCAGTATGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 3 0.09
4 31 0.91
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:9183795 original size:13 final size:14
Alignment explanation
Indices: 9183777--9183824 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 14
9183767 AAGCAATAGG
9183777 TAAAGATAAAT-AA
1 TAAAGATAAATAAA
9183790 TAAAGATAAATAAAA
1 TAAAGATAAAT-AAA
9183805 TAAAGATAAAGCTAAA
1 TAAAGATAAA--TAAA
9183821 TAAA
1 TAAA
9183825 ATTAAAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
13 11 0.35
15 12 0.39
16 7 0.23
17 1 0.03
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.21
Consensus pattern (14 bp):
TAAAGATAAATAAA
Found at i:9183815 original size:21 final size:21
Alignment explanation
Indices: 9183788--9183834 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
9183778 AAAGATAAAT
9183788 AATAAAGATAAATAAAA-TAA
1 AATAAAGATAAATAAAATTAA
*
9183808 AGATAAAGCTAAATAAAATTAA
1 A-ATAAAGATAAATAAAATTAA
9183830 AATAA
1 AATAA
9183835 TTTAAAGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 19 0.79
22 4 0.17
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.21
Consensus pattern (21 bp):
AATAAAGATAAATAAAATTAA
Found at i:9183840 original size:26 final size:27
Alignment explanation
Indices: 9183811--9183861 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
9183801 AAAATAAAGA
* *
9183811 TAAAGCTAAATAAAATTAA-AATAATT
1 TAAAGATAAATAAAAATAAGAATAATT
*
9183837 TAAAGATACATAAAAATAAGAATAA
1 TAAAGATAAATAAAAATAAGAATAA
9183862 AATAATAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (27 bp):
TAAAGATAAATAAAAATAAGAATAATT
Found at i:9191328 original size:15 final size:16
Alignment explanation
Indices: 9191308--9191339 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
9191298 CACATGATTC
9191308 TTTTGTTTTTAA-TTT
1 TTTTGTTTTTAACTTT
9191323 TTTTGTTTTTAACTTT
1 TTTTGTTTTTAACTTT
9191339 T
1 T
9191340 GTAAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.12, C:0.03, G:0.06, T:0.78
Consensus pattern (16 bp):
TTTTGTTTTTAACTTT
Found at i:9191425 original size:16 final size:16
Alignment explanation
Indices: 9191404--9191436 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
9191394 GATTTGTTTG
9191404 ACATCTTTTGTACTTA
1 ACATCTTTTGTACTTA
9191420 ACATCTTTTGTACTTA
1 ACATCTTTTGTACTTA
9191436 A
1 A
9191437 TAGAAAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.18, G:0.06, T:0.48
Consensus pattern (16 bp):
ACATCTTTTGTACTTA
Found at i:9193142 original size:16 final size:16
Alignment explanation
Indices: 9193132--9193165 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
9193122 CTTTTTTATT
9193132 ATTTG-AATTTTTTAC
1 ATTTGTAATTTTTTAC
9193147 ATTTGTAA-TTTTTAC
1 ATTTGTAATTTTTTAC
9193162 ATTT
1 ATTT
9193166 TTTTTAGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 16 0.89
16 2 0.11
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (16 bp):
ATTTGTAATTTTTTAC
Found at i:9199622 original size:17 final size:17
Alignment explanation
Indices: 9199600--9199639 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
9199590 AGGTGGGTAG
9199600 ACACCTAAAGGTGAGCT
1 ACACCTAAAGGTGAGCT
* *
9199617 ACACCTTAGGGTGAGCT
1 ACACCTAAAGGTGAGCT
9199634 ACACCT
1 ACACCT
9199640 TGGCTTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.20
Consensus pattern (17 bp):
ACACCTAAAGGTGAGCT
Found at i:9213961 original size:17 final size:18
Alignment explanation
Indices: 9213929--9213963 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
9213919 TTCTATTCAG
9213929 ATAATTATAAATTTTTAT
1 ATAATTATAAATTTTTAT
*
9213947 ATAATTAT-GATTTTTAT
1 ATAATTATAAATTTTTAT
9213964 GAATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
ATAATTATAAATTTTTAT
Found at i:9214056 original size:11 final size:10
Alignment explanation
Indices: 9214040--9214078 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
9214030 CATAATTATT
9214040 TAAAATATAAA
1 TAAAAT-TAAA
9214051 TAAAATTAATA
1 TAAAATTAA-A
9214062 TAAAATTAAA
1 TAAAATTAAA
*
9214072 TTAAATT
1 TAAAATT
9214079 TATTAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 10 0.38
11 16 0.62
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
TAAAATTAAA
Found at i:9214071 original size:21 final size:20
Alignment explanation
Indices: 9214033--9214091 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
9214023 ATTCAAACAT
*
9214033 AATTATTTAAAATATAAATAA
1 AATTAATTAAAAT-TAAATAA
*
9214054 AATTAATATAAAATTAAATTA
1 AATTAAT-TAAAATTAAATAA
*
9214075 AATTTATTAATAATTAA
1 AATTAATTAA-AATTAA
9214092 TTCATTTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 3 0.09
21 24 0.73
22 6 0.18
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AATTAATTAAAATTAAATAA
Found at i:9215161 original size:24 final size:23
Alignment explanation
Indices: 9215130--9215193 Score: 67
Period size: 24 Copynumber: 2.8 Consensus size: 23
9215120 AGCATGTTCC
9215130 TTTTTAAAAATATTTAATAAATA
1 TTTTTAAAAATATTTAATAAATA
* ** *
9215153 TTTTCTAAAATTATAAAATATATA
1 TTTT-TAAAAATATTTAATAAATA
*
9215177 TTTTTAAATAT-TTTAAT
1 TTTTTAAAAATATTTAAT
9215194 TTTTTATGTG
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
22 4 0.12
23 9 0.28
24 19 0.59
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTTTAAAAATATTTAATAAATA
Found at i:9215304 original size:133 final size:131
Alignment explanation
Indices: 9215081--9215375 Score: 352
Period size: 133 Copynumber: 2.2 Consensus size: 131
9215071 CTGTAGAACT
* *
9215081 CACTTATACC-AATTTTTTTTTTATT-TTTTTTACCTTTTTAGCATGTTCCTTTTTAAAAATATT
1 CACTTATACCAAACTTTTTTTTTATTCTTTTTTACCTTTTTACCATGTTCCTTTTTAAAAATATT
* * *
9215144 TAATAAATATTTTCTAAAATTATAAAATATATATTTTTAAATATTTTAATTTTTTATGTG-TGAG
66 TAATAAATATTTTCTAAAATTATAAAATATATATTTTTAAAGATTTTAA-CTTTCATGTGTTG-G
9215208 ACC
129 ACC
* * * *
9215211 CACTTATACCAAACCTTTTTTTTCTTCTTTTTTACCCTTTTTACCTTTTTTCCTTTTTTAAACAA
1 CACTTATACCAAACTTTTTTTTTATTCTTTTTTA-CCTTTTTACC-ATGTTCC-TTTTTAAA-AA
9215276 TATTTAAT-AAT-TTTT-T-AAATTATAAAAATATATATTTTTAAAGATTTTAACTTTCATGTGT
62 TATTTAATAAATATTTTCTAAAATTAT-AAAATATATATTTTTAAAGATTTTAACTTTCATGTGT
9215337 TGGACC
126 TGGACC
* * * *
9215343 TAATTATATCAAACTTTTTTTCTTTTTCTTTTT
1 CACTTATACCAAACTTTTTTT-TTATTCTTTTT
9215376 GGTCAACAAT
Statistics
Matches: 142, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
130 10 0.07
131 12 0.08
132 43 0.30
133 47 0.33
134 9 0.06
135 11 0.08
136 10 0.07
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.55
Consensus pattern (131 bp):
CACTTATACCAAACTTTTTTTTTATTCTTTTTTACCTTTTTACCATGTTCCTTTTTAAAAATATT
TAATAAATATTTTCTAAAATTATAAAATATATATTTTTAAAGATTTTAACTTTCATGTGTTGGAC
C
Found at i:9215642 original size:19 final size:21
Alignment explanation
Indices: 9215618--9215656 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
9215608 GAAAACCCAA
*
9215618 TAAAAGTTC-AAG-CCAATTT
1 TAAAAGCTCGAAGTCCAATTT
9215637 TAAAAGCTCGAAGTCCAATT
1 TAAAAGCTCGAAGTCCAATT
9215657 GTGGGCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (21 bp):
TAAAAGCTCGAAGTCCAATTT
Found at i:9216549 original size:18 final size:17
Alignment explanation
Indices: 9216516--9216562 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
9216506 CTGATTGGAG
* *
9216516 AGCAACAACAACAAAGA
1 AGCAAAAACAAAAAAGA
*
9216533 ATTCAAAAACAAAAAAGA
1 A-GCAAAAACAAAAAAGA
9216551 AGCAAAAACAAA
1 AGCAAAAACAAA
9216563 GTAAAATGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.70, C:0.17, G:0.09, T:0.04
Consensus pattern (17 bp):
AGCAAAAACAAAAAAGA
Found at i:9219415 original size:3 final size:3
Alignment explanation
Indices: 9219409--9219433 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
9219399 TTTGATGATG
9219409 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
9219434 CAACAACAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:9219438 original size:3 final size:3
Alignment explanation
Indices: 9219432--9219457 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9219422 TAATAATAAT
9219432 AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AA
9219458 TAATAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:9219614 original size:19 final size:18
Alignment explanation
Indices: 9219587--9219629 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
9219577 AAGATTTGCA
*
9219587 TTTTCAAAAATGAAATATT
1 TTTTTAAAAA-GAAATATT
*
9219606 TTTTTAAAAAGAAATTTT
1 TTTTTAAAAAGAAATATT
9219624 TTTTTA
1 TTTTTA
9219630 TTTTCCAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (18 bp):
TTTTTAAAAAGAAATATT
Found at i:9226528 original size:7 final size:7
Alignment explanation
Indices: 9226485--9226511 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
9226475 AGGTGTGCAA
9226485 AAAAAAC
1 AAAAAAC
9226492 AAAAAAC
1 AAAAAAC
9226499 AAAAAAC
1 AAAAAAC
9226506 AAAAAA
1 AAAAAA
9226512 TGTGAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:9226528 original size:26 final size:27
Alignment explanation
Indices: 9226492--9226550 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
9226482 CAAAAAAAAC
*
9226492 AAAAAAC-AAA-AAACAAAAAATGTGAA
1 AAAAAACAAAAGAAACAAAAAAAG-GAA
*
9226518 AAAAAACAAAAGAAAGAAAAAAAGGAA
1 AAAAAACAAAAGAAACAAAAAAAGGAA
9226545 AAAAAA
1 AAAAAA
9226551 AGAGAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 7 0.24
27 12 0.41
28 10 0.34
ACGTcount: A:0.81, C:0.05, G:0.10, T:0.03
Consensus pattern (27 bp):
AAAAAACAAAAGAAACAAAAAAAGGAA
Found at i:9226538 original size:10 final size:9
Alignment explanation
Indices: 9226515--9226562 Score: 51
Period size: 10 Copynumber: 5.1 Consensus size: 9
9226505 CAAAAAATGT
9226515 GAAAAAAAA
1 GAAAAAAAA
* *
9226524 CAAAAGAAA
1 GAAAAAAAA
*
9226533 GAAAAAAAG
1 GAAAAAAAA
9226542 GAAAAAAAAA
1 G-AAAAAAAA
9226552 GAGAAAAAAA
1 GA-AAAAAAA
9226562 G
1 G
9226563 GGAGAGTTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
9 15 0.48
10 16 0.52
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (9 bp):
GAAAAAAAA
Found at i:9226550 original size:13 final size:13
Alignment explanation
Indices: 9226486--9226561 Score: 55
Period size: 14 Copynumber: 5.5 Consensus size: 13
9226476 GGTGTGCAAA
**
9226486 AAAAACAAAAAACA
1 AAAAA-AAAAAAGG
9226500 AAAAACAAAAAATGTG
1 AAAAA-AAAAAA-G-G
*
9226516 AAAAAAAACAAAAG
1 AAAAAAAA-AAAGG
*
9226530 AAAGAAAAAAAGG
1 AAAAAAAAAAAGG
*
9226543 AAAAAAAAAGA-G
1 AAAAAAAAAAAGG
9226555 AAAAAAA
1 AAAAAAA
9226562 GGGAGAGTTA
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
12 8 0.15
13 13 0.25
14 20 0.38
15 3 0.06
16 8 0.15
ACGTcount: A:0.82, C:0.05, G:0.11, T:0.03
Consensus pattern (13 bp):
AAAAAAAAAAAGG
Found at i:9226551 original size:14 final size:14
Alignment explanation
Indices: 9226484--9226551 Score: 50
Period size: 15 Copynumber: 4.6 Consensus size: 14
9226474 GAGGTGTGCA
**
9226484 AAAAAAACAAAAAAC
1 AAAAAAA-AAAAAGG
9226499 AAAAAACAAAAAATGTG
1 AAAAAA-AAAAAA-G-G
9226516 AAAAAAAACAAAA-G
1 AAAAAAAA-AAAAGG
*
9226530 -AAAGAAAAAAAGG
1 AAAAAAAAAAAAGG
9226543 AAAAAAAAA
1 AAAAAAAAA
9226552 GAGAAAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 13
0.72 0.07 0.22
Matches are distributed among these distances:
12 4 0.09
13 7 0.16
14 8 0.19
15 11 0.26
16 3 0.07
17 10 0.23
ACGTcount: A:0.82, C:0.06, G:0.09, T:0.03
Consensus pattern (14 bp):
AAAAAAAAAAAAGG
Found at i:9227869 original size:86 final size:86
Alignment explanation
Indices: 9227756--9228165 Score: 426
Period size: 86 Copynumber: 4.8 Consensus size: 86
9227746 AAATCTTATG
* * * * * *
9227756 AATCTGAAAGTCCCTACGAACCAAAAACCTTTGCGAATTTAGAACCTTTGTGAAACATGAAATCT
1 AATCTGAAAGTCCTTACAAACCTAAAACCTTTGCAAATCTAGAACCTTTGTGAAACTTGAAATCT
* * *
9227821 TGTGAATCTTTCATTCTTACA
66 TATGAATCTTCCATTCTTGCA
* **
9227842 AATCTAAAAGTCCTTATGAACCTAAAACCTTTGCAAATCTAGAACCTTTGTGAAACTTGAAATCT
1 AATCTGAAAGTCCTTACAAACCTAAAACCTTTGCAAATCTAGAACCTTTGTGAAACTTGAAATCT
* *
9227907 TATGAACCTTCCATTCATGCA
66 TATGAATCTTCCATTCTTGCA
* * * ** * * * *
9227928 AATCTGAAAGCCCTTGCAAACCTAAAATCTTTAAAAATCCAAAACCTCTGCGAAACTTGAAATCT
1 AATCTGAAAGTCCTTACAAACCTAAAACCTTTGCAAATCTAGAACCTTTGTGAAACTTGAAATCT
** * **
9227993 TACAAATTTTCCATTCTTGTG
66 TATGAATCTTCCATTCTTGCA
* * * ** * *
9228014 AATTTGAAAATCCTTGA-AAACCTGAAACCTTTGTGAATCTAAAACCTTTGTGAAAGTTGAAATC
1 AATCTGAAAGTCCTT-ACAAACCTAAAACCTTTGCAAATCTAGAACCTTTGTGAAACTTGAAATC
***
9228078 TTATGAATCTTCCATTCTTTTG
65 TTATGAATCTTCCATTCTTGCA
* * **
9228100 AATTTGAAATTCCTTACAAACCTAAAACCTTTGCAAATCTAGAACCTTTGCAAAACTTGAAATCT
1 AATCTGAAAGTCCTTACAAACCTAAAACCTTTGCAAATCTAGAACCTTTGTGAAACTTGAAATCT
9228165 T
66 T
9228166 GCAAACCTAA
Statistics
Matches: 266, Mismatches: 56, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
85 1 0.00
86 265 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (86 bp):
AATCTGAAAGTCCTTACAAACCTAAAACCTTTGCAAATCTAGAACCTTTGTGAAACTTGAAATCT
TATGAATCTTCCATTCTTGCA
Done.