Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 63 of 190
Found at i:10391286 original size:16 final size:16
Alignment explanation
Indices: 10391242--10391288 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
10391232 AGCAAATAGC
* *
10391242 TTTAAATAATTTAACT
1 TTTATATAATTTAATT
*
10391258 TTGATAT--TTTAATT
1 TTTATATAATTTAATT
10391272 TTTATATAATTTAATT
1 TTTATATAATTTAATT
10391288 T
1 T
10391289 AATTTATCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 12 0.48
16 13 0.52
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (16 bp):
TTTATATAATTTAATT
Found at i:10392051 original size:22 final size:22
Alignment explanation
Indices: 10392026--10392068 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
10392016 TATATCTTTA
*
10392026 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
10392048 TATTTGTATCCCTAGAATTAA
1 TATTTGTATCCCTAGAATTAA
10392069 AGATAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.44
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:10395917 original size:43 final size:41
Alignment explanation
Indices: 10395794--10395909 Score: 169
Period size: 41 Copynumber: 2.8 Consensus size: 41
10395784 TTATCTCTCA
*
10395794 CATGCTAGATGTCATGAGCTAACCTTGTATAAGGTCATGAC
1 CATGCTAGATGTCATGAGCCAACCTTGTATAAGGTCATGAC
10395835 CATGCTAGATGTCATGAGCCAACCTTGTATAAGGTCATGAC
1 CATGCTAGATGTCATGAGCCAACCTTGTATAAGGTCATGAC
* ** *
10395876 CATGCATATGTTGTCATGATTCACCCTTGTATAA
1 CATGC-TA-GATGTCATGAGCCAACCTTGTATAA
10395910 AGCCATGATC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
41 45 0.66
42 2 0.03
43 21 0.31
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (41 bp):
CATGCTAGATGTCATGAGCCAACCTTGTATAAGGTCATGAC
Found at i:10403408 original size:24 final size:24
Alignment explanation
Indices: 10403360--10403409 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
10403350 CATTGCATTT
*
10403360 AGTAAAATGTATAGAAGAGTCTTA
1 AGTAAAATGTATAGAAGACTCTTA
* *
10403384 AGTAAATTGTATAGAAGACTTTTA
1 AGTAAAATGTATAGAAGACTCTTA
10403408 AG
1 AG
10403410 GTTGAACTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.20, T:0.32
Consensus pattern (24 bp):
AGTAAAATGTATAGAAGACTCTTA
Found at i:10409038 original size:37 final size:37
Alignment explanation
Indices: 10408997--10409070 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
10408987 TAATATATCA
*
10408997 ATATAAACTTATTAAAATAGATATAAATTAATAGTTT
1 ATATAAACTTATTAAAATAAATATAAATTAATAGTTT
10409034 ATATAAACTTATTAAAATAAATATAAATTAATAGTTT
1 ATATAAACTTATTAAAATAAATATAAATTAATAGTTT
10409071 GTGGTTTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.41
Consensus pattern (37 bp):
ATATAAACTTATTAAAATAAATATAAATTAATAGTTT
Found at i:10410379 original size:26 final size:25
Alignment explanation
Indices: 10410325--10410381 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 25
10410315 AATTACATGA
* *
10410325 TGAAATAAATAGAGAAACCATGAAC
1 TGAAATAAATAAAAAAACCATGAAC
10410350 ---AATAAATAAAAAAACCATGAAC
1 TGAAATAAATAAAAAAACCATGAAC
10410372 TTGAAATAAA
1 -TGAAATAAA
10410382 ATTTTTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
22 20 0.77
26 6 0.23
ACGTcount: A:0.61, C:0.11, G:0.11, T:0.18
Consensus pattern (25 bp):
TGAAATAAATAAAAAAACCATGAAC
Found at i:10410382 original size:22 final size:22
Alignment explanation
Indices: 10410328--10410371 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
10410318 TACATGATGA
* *
10410328 AATAAATAGAGAAACCATGAAC
1 AATAAATAAAAAAACCATGAAC
10410350 AATAAATAAAAAAACCATGAAC
1 AATAAATAAAAAAACCATGAAC
10410372 TTGAAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.64, C:0.14, G:0.09, T:0.14
Consensus pattern (22 bp):
AATAAATAAAAAAACCATGAAC
Found at i:10413986 original size:136 final size:136
Alignment explanation
Indices: 10413742--10414015 Score: 521
Period size: 136 Copynumber: 2.0 Consensus size: 136
10413732 TGAAGAGAAG
10413742 GTATAAGTAGAACTCTTTCAAGCTCTACCTGCACACCTTAAGACACTTGAAAAGAGTCTATTGCA
1 GTATAAGTAGAACTCTTTCAAGCTCTACCTGCACACCTTAAGACACTTGAAAAGAGTCTATTGCA
10413807 ATTGTGAATTATGAAAACACAAGTCCCATAGCCATTATAGGTTCAACTAAACTAGGGTTTTATTT
66 ATTGTGAATTATGAAAACACAAGTCCCATAGCCATTATAGGTTCAACTAAACTAGGGTTTTATTT
*
10413872 GGGGAA
131 AGGGAA
* *
10413878 GTATAAGTAGAACTCTTTCAAGCTCTAGCTGCACACCTTAAGACACTTGAAAAGATTCTATTGCA
1 GTATAAGTAGAACTCTTTCAAGCTCTACCTGCACACCTTAAGACACTTGAAAAGAGTCTATTGCA
10413943 ATTGTGAATTATGAAAACACAAGTCCCATAGCCATTATAGGTTCAACTAAACTAGGGTTTTATTT
66 ATTGTGAATTATGAAAACACAAGTCCCATAGCCATTATAGGTTCAACTAAACTAGGGTTTTATTT
10414008 AGGGAA
131 AGGGAA
10414014 GT
1 GT
10414016 GGTGACTTTT
Statistics
Matches: 135, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 135 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Consensus pattern (136 bp):
GTATAAGTAGAACTCTTTCAAGCTCTACCTGCACACCTTAAGACACTTGAAAAGAGTCTATTGCA
ATTGTGAATTATGAAAACACAAGTCCCATAGCCATTATAGGTTCAACTAAACTAGGGTTTTATTT
AGGGAA
Found at i:10415808 original size:13 final size:14
Alignment explanation
Indices: 10415785--10415815 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
10415775 CAACCTTGGT
10415785 TTTTTAGAGTTTTC
1 TTTTTAGAGTTTTC
10415799 TTTTTA-AGTTTTC
1 TTTTTAGAGTTTTC
10415812 TTTT
1 TTTT
10415816 ATCTTTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.13, C:0.06, G:0.10, T:0.71
Consensus pattern (14 bp):
TTTTTAGAGTTTTC
Found at i:10415884 original size:19 final size:21
Alignment explanation
Indices: 10415845--10415886 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
10415835 TGTTCTTTAC
*
10415845 TTTGATTTTAGTTTATTCAAG
1 TTTGATTTTAGTGTATTCAAG
10415866 TTTGATTTTA-TGT-TTCAAG
1 TTTGATTTTAGTGTATTCAAG
10415885 TT
1 TT
10415887 AGTTTAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 2 0.10
21 10 0.50
ACGTcount: A:0.21, C:0.05, G:0.14, T:0.60
Consensus pattern (21 bp):
TTTGATTTTAGTGTATTCAAG
Found at i:10420805 original size:18 final size:18
Alignment explanation
Indices: 10420784--10420821 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
10420774 CTTGTGCTTA
*
10420784 TTATTTCACTTACTTGCT
1 TTATTTCAATTACTTGCT
*
10420802 TTATTTCAATTCCTTGCT
1 TTATTTCAATTACTTGCT
10420820 TT
1 TT
10420822 GAATTGATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.21, G:0.05, T:0.58
Consensus pattern (18 bp):
TTATTTCAATTACTTGCT
Found at i:10422777 original size:13 final size:13
Alignment explanation
Indices: 10422761--10422785 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10422751 GTTTTAAACA
10422761 TATATTTGATATT
1 TATATTTGATATT
10422774 TATATTTGATAT
1 TATATTTGATAT
10422786 AAATGTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (13 bp):
TATATTTGATATT
Found at i:10433767 original size:142 final size:142
Alignment explanation
Indices: 10433511--10433796 Score: 554
Period size: 142 Copynumber: 2.0 Consensus size: 142
10433501 TGCGTAAACA
10433511 TGGCTTATTACAAGTTTTATAGGATGAAAAGTCATAATTGTCATGTTTTCATGCAACGATTGCTT
1 TGGCTTATTACAAGTTTTATAGGATGAAAAGTCATAATTGTCATGTTTTCATGCAACGATTGCTT
10433576 CCAATTACCTTTCGTGATTTGGTGCCTATGTCCATTTAAAAAACTCATTTTTTTTAAAGATCTAT
66 CCAATTACCTTTCGTGATTTGGTGCCTATGTCCATTTAAAAAACTCATTTTTTTTAAAGATCTAT
10433641 GTTCTACTAAAT
131 GTTCTACTAAAT
*
10433653 TGGCTTATTACAAGTTTTATGGGATGAAAAGTCATAATTGTCATGTTTTCATGCAACGATTGCTT
1 TGGCTTATTACAAGTTTTATAGGATGAAAAGTCATAATTGTCATGTTTTCATGCAACGATTGCTT
*
10433718 CCAATTACCTTTCGTGATTTGGTGCCTATGTCCATTTAAAGAACTCATTTTTTTTAAAGATCTAT
66 CCAATTACCTTTCGTGATTTGGTGCCTATGTCCATTTAAAAAACTCATTTTTTTTAAAGATCTAT
10433783 GTTCTACTAAAT
131 GTTCTACTAAAT
10433795 TG
1 TG
10433797 CATGTAGATC
Statistics
Matches: 142, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
142 142 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (142 bp):
TGGCTTATTACAAGTTTTATAGGATGAAAAGTCATAATTGTCATGTTTTCATGCAACGATTGCTT
CCAATTACCTTTCGTGATTTGGTGCCTATGTCCATTTAAAAAACTCATTTTTTTTAAAGATCTAT
GTTCTACTAAAT
Found at i:10437237 original size:158 final size:158
Alignment explanation
Indices: 10436945--10437490 Score: 650
Period size: 158 Copynumber: 3.5 Consensus size: 158
10436935 TTATTTTCCT
* * * * * *
10436945 TTGTGATTCTAGATGAAATAGATAGTGTAGTAATTGAAAAACTAAACATTGTAGGACAAATGTTA
1 TTGTGATTGTTGATGAAGTAGATAGTGTAGTAATTGAAAGACTAAACATTGTAGGACGAATGGTA
* ** *
10437010 TTGAACTATATAGTGTTTTGTGCTTATTGAGATGCAACCACTTTGTGAAGGTGAAAACTATTGCA
66 TTGAACTATATAGTGTTTTATGCTTATTGAGATGCAATGACTTTGTGAAGGTGAAAACTATTGCG
* * *
10437075 TATTTTGCTTTGTGATTTTGGTTGTATA
131 TATTTTACTTTGTAATTTTGGTTGTGTA
* * * * *
10437103 TTGTGATTGTTGATGAAGTAGATAGTATTGTAATTGAAAGACTAAGCATTG-CGAGATGAATGGT
1 TTGTGATTGTTGATGAAGTAGATAGTGTAGTAATTGAAAGACTAAACATTGTAG-GACGAATGGT
* * * * * **
10437167 ACTAAACTACATAGTATTTTATGCTTATTGAGGTATAATGACTTTGTGAAGGTGAAAACT-TTGG
65 ATTGAACTATATAGTGTTTTATGCTTATTGAGATGCAATGACTTTGTGAAGGTGAAAACTATT-G
*
10437231 CGTATTTTACTTTGTAATTCTGGTTGTGTA
129 CGTATTTTACTTTGTAATTTTGGTTGTGTA
* * * * * * *
10437261 CTGTAATTGTTGA-GAAAGTAGATAATGTAGTAATTGAAAGACTAAATATTGCAAGACGAGTGGT
1 TTGTGATTGTTGATG-AAGTAGATAGTGTAGTAATTGAAAGACTAAACATTGTAGGACGAATGGT
* ** *
10437325 ATTGAACTATACAGTGTTTTATGCTTATTGAGATGCAATGACTTTGTGAAAATGAAAACTATTGT
65 ATTGAACTATATAGTGTTTTATGCTTATTGAGATGCAATGACTTTGTGAAGGTGAAAACTATTGC
* *
10437390 GTATTTTTCTTTCTAAGTTTT-GTTGTGTA
130 GTATTTTACTTTGTAA-TTTTGGTTGTGTA
* * *
10437419 TTGTGATTATTGATGAAGTAGATAGTGTAGTAATTGAAAGCCTAAACATTGTAGGATGAATGGTA
1 TTGTGATTGTTGATGAAGTAGATAGTGTAGTAATTGAAAGACTAAACATTGTAGGACGAATGGTA
10437484 TTGAACT
66 TTGAACT
10437491 GTGCTATTGG
Statistics
Matches: 320, Mismatches: 61, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
157 4 0.01
158 310 0.97
159 6 0.02
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.39
Consensus pattern (158 bp):
TTGTGATTGTTGATGAAGTAGATAGTGTAGTAATTGAAAGACTAAACATTGTAGGACGAATGGTA
TTGAACTATATAGTGTTTTATGCTTATTGAGATGCAATGACTTTGTGAAGGTGAAAACTATTGCG
TATTTTACTTTGTAATTTTGGTTGTGTA
Found at i:10440954 original size:73 final size:73
Alignment explanation
Indices: 10440832--10440973 Score: 275
Period size: 73 Copynumber: 1.9 Consensus size: 73
10440822 CAAATTAAGA
*
10440832 ATACTAATTGTGAAACTACACTTCCTTACTCATAAACCATAAACGTTATTTATTACATGCATGTC
1 ATACTAATTGTGAAACTACACTTCCTTACTCATAAACCATAAACATTATTTATTACATGCATGTC
10440897 ATAACGTT
66 ATAACGTT
10440905 ATACTAATTGTGAAACTACACTTCCTTACTCATAAACCATAAACATTATTTATTACATGCATGTC
1 ATACTAATTGTGAAACTACACTTCCTTACTCATAAACCATAAACATTATTTATTACATGCATGTC
10440970 ATAA
66 ATAA
10440974 TGTATAGAGT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.35
Consensus pattern (73 bp):
ATACTAATTGTGAAACTACACTTCCTTACTCATAAACCATAAACATTATTTATTACATGCATGTC
ATAACGTT
Found at i:10443111 original size:43 final size:43
Alignment explanation
Indices: 10443064--10443215 Score: 225
Period size: 43 Copynumber: 3.5 Consensus size: 43
10443054 TCATCTAAAT
*
10443064 AGAGGCTAAATAACTTTAAAATAGGAAATAGGCTCCTCTATTC
1 AGAGGCTAAATAACTTTAAAATAGAAAATAGGCTCCTCTATTC
* *
10443107 AGAGGCTAAATAAATTTAAAATAGAAAATAGGCTTCTCTATTC
1 AGAGGCTAAATAACTTTAAAATAGAAAATAGGCTCCTCTATTC
*
10443150 AGAGGCTAAACAACTTTAAAATAGAAAAT-GAGCTCCTCTATTC
1 AGAGGCTAAATAACTTTAAAATAGAAAATAG-GCTCCTCTATTC
* * *
10443193 AAATGCTAAAAAACTTTAAAATA
1 AGAGGCTAAATAACTTTAAAATA
10443216 ATTCTTTAAC
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
42 1 0.01
43 98 0.99
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.28
Consensus pattern (43 bp):
AGAGGCTAAATAACTTTAAAATAGAAAATAGGCTCCTCTATTC
Found at i:10449994 original size:16 final size:17
Alignment explanation
Indices: 10449970--10450002 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10449960 AATTATCTAT
*
10449970 GGTAGGATAGTTTATGG
1 GGTAGGATAGGTTATGG
10449987 GGTA-GATAGGTTATGG
1 GGTAGGATAGGTTATGG
10450003 ATAAGGGGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.24, C:0.00, G:0.42, T:0.33
Consensus pattern (17 bp):
GGTAGGATAGGTTATGG
Found at i:10463361 original size:32 final size:32
Alignment explanation
Indices: 10463324--10463385 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
10463314 GAATTGCATT
10463324 TTATTAAGTGACTATATAAATGAATGAATGAA
1 TTATTAAGTGACTATATAAATGAATGAATGAA
10463356 TTATTAAGTGACTATATAAATGAATGAATG
1 TTATTAAGTGACTATATAAATGAATGAATG
10463386 CATGAATGAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.45, C:0.03, G:0.16, T:0.35
Consensus pattern (32 bp):
TTATTAAGTGACTATATAAATGAATGAATGAA
Found at i:10466262 original size:19 final size:20
Alignment explanation
Indices: 10466234--10466273 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
10466224 GATGTGACTA
10466234 TTTATATTTA-AATCTTATT
1 TTTATATTTATAATCTTATT
* *
10466253 TTTATTTTTATTATCTTATT
1 TTTATATTTATAATCTTATT
10466273 T
1 T
10466274 AATCTTACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTATATTTATAATCTTATT
Found at i:10466518 original size:14 final size:14
Alignment explanation
Indices: 10466473--10466523 Score: 75
Period size: 14 Copynumber: 3.6 Consensus size: 14
10466463 GGTTTGCATA
*
10466473 TTAGGGTTTTATTT
1 TTAGGGTTTCATTT
* *
10466487 TTAAGATTTCATTT
1 TTAGGGTTTCATTT
10466501 TTAGGGTTTCATTT
1 TTAGGGTTTCATTT
10466515 TTAGGGTTT
1 TTAGGGTTT
10466524 TGTTTTAGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.18, C:0.04, G:0.20, T:0.59
Consensus pattern (14 bp):
TTAGGGTTTCATTT
Found at i:10466529 original size:14 final size:14
Alignment explanation
Indices: 10466473--10466538 Score: 71
Period size: 14 Copynumber: 4.7 Consensus size: 14
10466463 GGTTTGCATA
10466473 TTAGGGTTTTATTT
1 TTAGGGTTTTATTT
* * *
10466487 TTAAGATTTCATTT
1 TTAGGGTTTTATTT
*
10466501 TTAGGGTTTCATTT
1 TTAGGGTTTTATTT
*
10466515 TTAGGGTTTT-GTT
1 TTAGGGTTTTATTT
10466528 TTAGGGCTTTT
1 TTAGGG-TTTT
10466539 TGCAAGGTCT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
13 8 0.18
14 36 0.82
ACGTcount: A:0.15, C:0.05, G:0.21, T:0.59
Consensus pattern (14 bp):
TTAGGGTTTTATTT
Found at i:10466643 original size:10 final size:10
Alignment explanation
Indices: 10466628--10466659 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
10466618 AGCAAGCTTC
10466628 TTTTTTATAT
1 TTTTTTATAT
10466638 TTTTTTATA-
1 TTTTTTATAT
10466647 -TTTTTATAT
1 TTTTTTATAT
10466656 TTTT
1 TTTT
10466660 ATTTAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.40
10 12 0.60
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTTATAT
Found at i:10473785 original size:27 final size:27
Alignment explanation
Indices: 10473755--10473820 Score: 132
Period size: 27 Copynumber: 2.4 Consensus size: 27
10473745 GCACAAATTG
10473755 AGGGGGAGTTTTGCCATGCATTGATTA
1 AGGGGGAGTTTTGCCATGCATTGATTA
10473782 AGGGGGAGTTTTGCCATGCATTGATTA
1 AGGGGGAGTTTTGCCATGCATTGATTA
10473809 AGGGGGAGTTTT
1 AGGGGGAGTTTT
10473821 TCCAAAGTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.21, C:0.09, G:0.36, T:0.33
Consensus pattern (27 bp):
AGGGGGAGTTTTGCCATGCATTGATTA
Found at i:10474883 original size:21 final size:20
Alignment explanation
Indices: 10474835--10474884 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
10474825 CCCCATATAG
10474835 GGGATCGATCACCTAAAGAA
1 GGGATCGATCACCTAAAGAA
** * *
10474855 TAGATCGATCCCCTTAAGCAA
1 GGGATCGATCACCTAAAG-AA
10474876 GGGATCGAT
1 GGGATCGAT
10474885 TGGGTAAGGC
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (20 bp):
GGGATCGATCACCTAAAGAA
Found at i:10491631 original size:21 final size:22
Alignment explanation
Indices: 10491575--10491636 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 22
10491565 AGTGTAGTGT
10491575 AATCACAAAAAG-AAATGAAGC
1 AATCACAAAAAGAAAATGAAGC
* * **
10491596 ATTCATAAGCA-AAAATGAAGC
1 AATCACAAAAAGAAAATGAAGC
10491617 AATCA-AAAAAGAAAATGAAG
1 AATCACAAAAAGAAAATGAAG
10491637 GTGGTTTTTC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
20 3 0.09
21 29 0.91
ACGTcount: A:0.61, C:0.11, G:0.15, T:0.13
Consensus pattern (22 bp):
AATCACAAAAAGAAAATGAAGC
Found at i:10495736 original size:692 final size:692
Alignment explanation
Indices: 10494380--10495763 Score: 1412
Period size: 692 Copynumber: 2.0 Consensus size: 692
10494370 ATTGTTCCTG
* * *
10494380 TAAATATATAAGAAAAATAATTATAAATTAAAAAATAAATTGATAACGGTAACAAGTGAGAAATG
1 TAAATATATAAGAAAAATAATTAAAAATTAAAAAATAAATTGATAACGATAACAAGTGAGAAACG
* * * *
10494445 TAAAATTAGTATCATTTGGTATGAAATGGGTAAGAAAAGTCATAAAATACTAAGAAAGAGTTATA
66 TAAAATTAATATCATTTGGTATAAAATGGGTAAGAAAAGTCATAAAATACTAAAAAAAAGTTATA
* ** * *
10494510 GCAATTCTAAATGTAATTGAAAGTAATAACAATCATAAAAATATATTATTATAATATAAATAATT
131 GAAATTCTAAACATAATTGAAAG--A-AACAACCATAAAAATATATTACTATAATATAAATAATT
* **
10494575 ATGATGGCAATGTAAAATTTTAATTAATTATTATTTTTGTGTATATATAAGAAAAATAGAAAAAA
193 ATGATGGCAATGTAAAATTTTAATTAATTATTATTTTTATAAATATATAAGAAAAATAGAAAAAA
* ** *
10494640 ATTAAAAAAAATAAAATAGTAATGTAAACAAGTGAGAAGAAACATAAAATTAATATTATTTGACG
258 ATTAAAAAAAATAAAATAGTAATATAAACAAGTGAGAAGAAACATAAAATTAATACCATTTGACA
* *
10494705 TAAAATAGGTAAGAAGGGTAGTAACATACTAGAAAAGAGTTATGACAATTCTAAACATAATGAAA
323 TAAAATAGGTAAAAAGGGTAGTAACATACTAGAAAAGAGTTATGACAATTCTAAACAAAATGAAA
* * * * * ** **
10494770 GATAAAAACAATGTAAGAATATATTATTATAACATAAATAATTATCTTGGCAAATGAAAATTTTA
388 GATAAAAAAAATATAAAAAAAAATTATTATAACATAAATAATTATCTTAACAAATGAAAATAATA
* * * *
10494835 ACTAATTATTATTTTTTAAAATATATAAAGAATATAACTAAAAATTGAAAAATAAATAGGTAATG
453 ACTAATTATTATTTTGTAAAATATATAAAGAAAATAACTAAAAATTGAAAAATAAATAGATAACG
* *
10494900 TAAAAAAGTGAAAAAAGTGTAAAATTAGTATAATTTAATGTAATATAAGTAAAAAATATCATAAC
518 TAAAAAAGTGAAAAAAGTGTAAAATTAGTATAATTTAA-GTAAAATAAGTAAAAAATATCACAAC
* * * * *
10494965 ATACTAAGAAGAAAATGACAATCTAAATATAATTAAAGGTAAGAACAATCATAAAAACTAAATTA
582 ACACTAAGAAGAAAATGACAATCTAAACATAATGAAAAGCAAGAACAATCATAAAAACTAAATTA
*
10495030 TTACAACATAAATAATTAAG-TTACAAACGTAAAATTTTAATTTTTT
647 TTACAACATAAATAATTAAGATGAC-AACGTAAAATTTTAATTTTTT
*
10495076 TAAATATATAAGAAAAATAATTAAAAATTAAAAAAT-AATTGGTAAC-ATAAACAAGTGAAAAGA
1 TAAATATATAAGAAAAATAATTAAAAATTAAAAAATAAATTGATAACGAT-AACAAGTG---AGA
* ** *
10495139 AACGTAAAATTAATATCATTTGGTGTAAAATGGGTATA-AATTGTCATAATATGA-TAAAAAAAA
62 AACGTAAAATTAATATCATTTGGTATAAAATGGGTA-AGAAAAGTCATAAAAT-ACTAAAAAAAA
* * * *
10495202 GTTAT-GAAATTTTAAACATGA-TGAAAG-AACAACCATAATAATATATTACTATAATGTAAATA
125 GTTATAGAAATTCTAAACATAATTGAAAGAAACAACCATAAAAATATATTACTATAATATAAATA
* * *
10495264 ATTAT-ATTGGTAACT-TAAAA-TTTAATTAATTATTA-TTTTATAAATATCTAA-AAAAATAGT
190 ATTATGA-TGGCAA-TGTAAAATTTTAATTAATTATTATTTTTATAAATATATAAGAAAAATAGA
* * * * * * *
10495324 TAGAAATT-AAAAACAT-AAATTGATAATATAAACAAGTGAGAATAAACGT-AAATTAGTACCAT
253 AAAAAATTAAAAAAAATAAAATAG-TAATATAAACAAGTGAGAAGAAACATAAAATTAATACCAT
* * * *
10495386 TT-AGCATAAAATGGGTAAAAAGTGTTA-TAACATATTA-AGAAAGAGTTATGACATTTGC-AAA
317 TTGA-CATAAAATAGGTAAAAAG-GGTAGTAACATACTAGA-AAAGAGTTATGACAATT-CTAAA
*
10495447 CAAAATGAAAAGTATAAAAAAAAAATCATAAAAAAAAATTATTATAA-AGGT-AATAATTATGTT
378 CAAAATG-AAAG-AT--AAAAAAAAT-ATAAAAAAAAATTATTATAACA--TAAATAATTATCTT
* * *
10495510 AACAACAT-AAAATAATAATTATTTATTATTCTTGT-AAATATA-AAAGAAAATAGCT-AAAATT
436 AACAA-ATGAAAATAATAACTAATTATTATT-TTGTAAAATATATAAAGAAAATAACTAAAAATT
* * * *
10495571 -AAAAATAAATTGATAACGTAAACAAGTGAGAAGCAA-TGTAAAATTAGTATCATTTGGAA-TAA
499 GAAAAATAAATAGATAACGTAAAAAAGTGA-AA-AAAGTGTAAAATTAGTATAATTT--AAGTAA
** * * * * * * * *
10495633 AATGTGTTAGAAGTATTACAACACACTAAGAA-AAAGTTACAATAATTTCAAACATGATGAAAAG
560 AATAAGTAAAAAATATCACAACACACTAAGAAGAAAATGAC---AATCT-AAACATAATGAAAAG
* * * * *
10495697 CAATAACAA-CAATAAAAA-TATAA-TATTGCAACGTAAATAATTATGATGACAATGTAAAATTT
621 CAAGAACAATC-ATAAAAACTA-AATTATTACAACATAAATAATTAAGATGACAACGTAAAATTT
10495759 TAATT
684 TAATT
10495764 AATTATTGTT
Statistics
Matches: 567, Mismatches: 88, Indels: 70
0.78 0.12 0.10
Matches are distributed among these distances:
686 2 0.00
687 66 0.12
688 38 0.07
689 47 0.08
690 64 0.11
691 38 0.07
692 145 0.26
693 37 0.07
694 1 0.00
695 17 0.03
696 41 0.07
697 11 0.02
698 58 0.10
699 2 0.00
ACGTcount: A:0.53, C:0.06, G:0.11, T:0.30
Consensus pattern (692 bp):
TAAATATATAAGAAAAATAATTAAAAATTAAAAAATAAATTGATAACGATAACAAGTGAGAAACG
TAAAATTAATATCATTTGGTATAAAATGGGTAAGAAAAGTCATAAAATACTAAAAAAAAGTTATA
GAAATTCTAAACATAATTGAAAGAAACAACCATAAAAATATATTACTATAATATAAATAATTATG
ATGGCAATGTAAAATTTTAATTAATTATTATTTTTATAAATATATAAGAAAAATAGAAAAAAATT
AAAAAAAATAAAATAGTAATATAAACAAGTGAGAAGAAACATAAAATTAATACCATTTGACATAA
AATAGGTAAAAAGGGTAGTAACATACTAGAAAAGAGTTATGACAATTCTAAACAAAATGAAAGAT
AAAAAAAATATAAAAAAAAATTATTATAACATAAATAATTATCTTAACAAATGAAAATAATAACT
AATTATTATTTTGTAAAATATATAAAGAAAATAACTAAAAATTGAAAAATAAATAGATAACGTAA
AAAAGTGAAAAAAGTGTAAAATTAGTATAATTTAAGTAAAATAAGTAAAAAATATCACAACACAC
TAAGAAGAAAATGACAATCTAAACATAATGAAAAGCAAGAACAATCATAAAAACTAAATTATTAC
AACATAAATAATTAAGATGACAACGTAAAATTTTAATTTTTT
Found at i:10496858 original size:239 final size:238
Alignment explanation
Indices: 10496392--10496956 Score: 583
Period size: 239 Copynumber: 2.4 Consensus size: 238
10496382 AAGAAAAACT
* * * *
10496392 ATAAAAAGATATTATTGCAACGTAAATAATTAAGTAGGTAACGTAAAATTTTAATTAATTATTAT
1 ATAAGAAGATATAATTGCAACGTAAATAATTAAG-AAGTAACATAAAATTTTAATTAATTATTAT
* * *
10496457 TTTGTT-AATATACAAAAAAAAAGATAAAAATTAAAAAAAATAAATAGGTAACATAAACAAGTAA
65 TTT-TTAAATATATAAAAAAATAGATAAAAATTAAAAAAAACAAATAGGTAACATAAACAAGTAA
* * ** * * *
10496521 GAAGAATCGTAAAATTCATATCATTTGATGTAAAATAAGTAAGAAGTGTTGTAATACATATTAAG
129 GAAAAATCATAAAATTCATATCATTTGACATAAAATAAGTAAAAAGTGTTATAATACACATTAAG
**
10496586 AAAGAGTTATAACAATTTTAAACGTAATGGAATGT-AAAACCAATC
194 AAAGAGTTATAACAATTCAAAACGTAATGGAATGTGAAAA-CAATC
*
10496631 ATAAGAAGATATAATTGCAACGTAAATAATTAAGCAAGTAGCATAAAATTTTAATTAATTATTAT
1 ATAAGAAGATATAATTGCAACGTAAATAATTAAG-AAGTAACATAAAATTTTAATTAATTATTAT
* ** *
10496696 TTTTTAAATATATAAGAAAAATAGATAAAATTTAAAAAAAAAAAACAAATAGGTAATGTGAACAA
65 TTTTTAAATATATAA-AAAAATAGATAAAAATT----AAAAAAAACAAATAGGTAACATAAACAA
* ** *
10496761 GTGAGAAAAAGT-ATAAAATTTGTATCA-TTGACATAAAATGAGTAAAAAGTGTTAT-A-ACACA
125 GTAAGAAAAA-TCATAAAATTCATATCATTTGACATAAAATAAGTAAAAAGTGTTATAATACACA
* * * * *
10496822 TTAA-AAA-AGTTATGACAATTCAAAACTTATTGGAATGTGAGAACAATG
189 TTAAGAAAGAGTTATAACAATTCAAAACGTAATGGAATGTGAAAACAATC
* * * * * *
10496870 GTACGAAAATATTAA-TGTAACGTAAATAATTAA-ATTGATAATATAAAATTTTAATTAATTATT
1 ATAAGAAGATA-TAATTGCAACGTAAATAATTAAGA-AG-TAACATAAAATTTTAATTAATTATT
* * *
10496933 GTTTATGTAACTATATAAAAAAAT
63 ATTT-TTTAAATATATAAAAAAAT
10496957 TTTAATAAAT
Statistics
Matches: 273, Mismatches: 41, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
237 1 0.00
238 3 0.01
239 157 0.58
240 35 0.13
241 8 0.03
242 1 0.00
243 23 0.08
244 44 0.16
245 1 0.00
ACGTcount: A:0.51, C:0.06, G:0.12, T:0.31
Consensus pattern (238 bp):
ATAAGAAGATATAATTGCAACGTAAATAATTAAGAAGTAACATAAAATTTTAATTAATTATTATT
TTTTAAATATATAAAAAAATAGATAAAAATTAAAAAAAACAAATAGGTAACATAAACAAGTAAGA
AAAATCATAAAATTCATATCATTTGACATAAAATAAGTAAAAAGTGTTATAATACACATTAAGAA
AGAGTTATAACAATTCAAAACGTAATGGAATGTGAAAACAATC
Found at i:10497545 original size:15 final size:14
Alignment explanation
Indices: 10497525--10497557 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
10497515 CTAAGACTAG
10497525 AAATAAAAATTATA
1 AAATAAAAATTATA
10497539 CAAAT-AAAATTATA
1 -AAATAAAAATTATA
10497553 AAATA
1 AAATA
10497558 TATAACATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 9 0.53
15 4 0.24
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (14 bp):
AAATAAAAATTATA
Found at i:10503126 original size:21 final size:21
Alignment explanation
Indices: 10503102--10503147 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
10503092 ATTTAAGTTA
10503102 TAAAT-TTATTAATTAATTAAT
1 TAAATATT-TTAATTAATTAAT
*
10503123 TAAATATTTTTATTAATTAAT
1 TAAATATTTTAATTAATTAAT
10503144 TAAA
1 TAAA
10503148 AAATTCCCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TAAATATTTTAATTAATTAAT
Found at i:10503592 original size:7 final size:7
Alignment explanation
Indices: 10503580--10503609 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
10503570 CAAACGTGGC
10503580 AAATGCA
1 AAATGCA
10503587 AAATGCA
1 AAATGCA
10503594 AAATGCA
1 AAATGCA
*
10503601 AAGTGCA
1 AAATGCA
10503608 AA
1 AA
10503610 CCAAAGGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (7 bp):
AAATGCA
Found at i:10503873 original size:2 final size:2
Alignment explanation
Indices: 10503866--10503900 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
10503856 AAGGTTTCCT
10503866 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10503901 CACAAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10507536 original size:5 final size:5
Alignment explanation
Indices: 10507524--10507562 Score: 50
Period size: 5 Copynumber: 8.6 Consensus size: 5
10507514 TTTATTGGGG
10507524 AAAA- AAAAC AAAAC AAAAC AAAAC -AAAC -AAAC -AAAC AAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAA
10507563 CACTGAAGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
4 16 0.48
5 17 0.52
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:10507564 original size:8 final size:9
Alignment explanation
Indices: 10507524--10507562 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
10507514 TTTATTGGGG
*
10507524 AAAAAAAAC
1 AAAACAAAC
10507533 AAAACAAAAC
1 AAAAC-AAAC
10507543 AAAACAAAC
1 AAAACAAAC
10507552 -AAACAAAC
1 AAAACAAAC
10507560 AAA
1 AAA
10507563 CACTGAAGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
8 8 0.30
9 10 0.37
10 9 0.33
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAACAAAC
Found at i:10510532 original size:17 final size:17
Alignment explanation
Indices: 10510510--10510550 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
10510500 TCTACATCTT
*
10510510 AACCCTAATTAGGCATA
1 AACCCTAATTACGCATA
10510527 AACCCTAATTACGCATA
1 AACCCTAATTACGCATA
10510544 AACCCTA
1 AACCCTA
10510551 CCATCTCTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.41, C:0.29, G:0.07, T:0.22
Consensus pattern (17 bp):
AACCCTAATTACGCATA
Found at i:10513674 original size:27 final size:27
Alignment explanation
Indices: 10513644--10513697 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
10513634 ATTAGGAAAC
10513644 AAAGCCAGTGCATCTAACATTATCATT
1 AAAGCCAGTGCATCTAACATTATCATT
10513671 AAAGCCAGTGCATCTAACATTATCATT
1 AAAGCCAGTGCATCTAACATTATCATT
10513698 CATCCGAAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (27 bp):
AAAGCCAGTGCATCTAACATTATCATT
Found at i:10515237 original size:29 final size:28
Alignment explanation
Indices: 10515204--10515269 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 28
10515194 ATTTTTTGTC
10515204 AAAAAATTAATGAAATTAAAAATATAATG
1 AAAAAATTAATGAAATT-AAAATATAATG
* *
10515233 AAAAATTTTAATTAAATTAAAATATAATG
1 AAAAA-ATTAATGAAATTAAAATATAATG
*
10515262 ACAAAATT
1 AAAAAATT
10515270 CACCATCTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 2 0.06
29 20 0.62
30 10 0.31
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.32
Consensus pattern (28 bp):
AAAAAATTAATGAAATTAAAATATAATG
Found at i:10515250 original size:30 final size:30
Alignment explanation
Indices: 10515210--10515269 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
10515200 TGTCAAAAAA
10515210 TTAATGAAATTAAAAATATAATGA-AAAATT
1 TTAATGAAATT-AAAATATAATGACAAAATT
*
10515240 TTAATTAAATTAAAATATAATGACAAAATT
1 TTAATGAAATTAAAATATAATGACAAAATT
10515270 CACCATCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (30 bp):
TTAATGAAATTAAAATATAATGACAAAATT
Found at i:10516481 original size:73 final size:73
Alignment explanation
Indices: 10516357--10516550 Score: 307
Period size: 73 Copynumber: 2.7 Consensus size: 73
10516347 TTCAGGTAAC
* ** *
10516357 AAATTATTTTCTCTTTTGTTCTTATGTTATGAAACAATGTGAATAATAGTATTCGAATATACTAT
1 AAATCATTTTCTCCATTGTTCTTATGTTATGAAACAATGTAAATAATAGTATTCGAATATACTAT
10516422 ACTATTGT
66 ACTATTGT
* * *
10516430 AAATCATTTTCTCCCTTGTTCTTATGTTATGAAACAATATAAATAATAGTATTCGAATATGCTAT
1 AAATCATTTTCTCCATTGTTCTTATGTTATGAAACAATGTAAATAATAGTATTCGAATATACTAT
10516495 ACTATTGT
66 ACTATTGT
* *
10516503 AAATCATTTTCTCCATTGTTCTTATATTATGAAATAATGTAAATAATA
1 AAATCATTTTCTCCATTGTTCTTATGTTATGAAACAATGTAAATAATA
10516551 ATAGTATTTG
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 111 1.00
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.44
Consensus pattern (73 bp):
AAATCATTTTCTCCATTGTTCTTATGTTATGAAACAATGTAAATAATAGTATTCGAATATACTAT
ACTATTGT
Found at i:10520914 original size:24 final size:24
Alignment explanation
Indices: 10520887--10520956 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 24
10520877 GTTTTTTTAT
10520887 TTTATTTTTTGTAATTGTTTAGGG
1 TTTATTTTTTGTAATTGTTTAGGG
*
10520911 TTTA------GTAAATTTGTTTA--T
1 TTTATTTTTTGT-AA-TTGTTTAGGG
10520929 TTTATTTTTTGTAATTGTTTAGGG
1 TTTATTTTTTGTAATTGTTTAGGG
10520953 TTTA
1 TTTA
10520957 GTAAAAAGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 20
0.61 0.04 0.36
Matches are distributed among these distances:
18 6 0.18
19 2 0.06
20 7 0.21
22 7 0.21
23 2 0.06
24 10 0.29
ACGTcount: A:0.20, C:0.00, G:0.17, T:0.63
Consensus pattern (24 bp):
TTTATTTTTTGTAATTGTTTAGGG
Found at i:10520941 original size:42 final size:42
Alignment explanation
Indices: 10520873--10520961 Score: 160
Period size: 42 Copynumber: 2.1 Consensus size: 42
10520863 TACATTTTTG
* *
10520873 GTAAGTTTTTTTATTTTATTTTTTGTAATTGTTTAGGGTTTA
1 GTAAATTTGTTTATTTTATTTTTTGTAATTGTTTAGGGTTTA
10520915 GTAAATTTGTTTATTTTATTTTTTGTAATTGTTTAGGGTTTA
1 GTAAATTTGTTTATTTTATTTTTTGTAATTGTTTAGGGTTTA
10520957 GTAAA
1 GTAAA
10520962 AAGCACTGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.22, C:0.00, G:0.17, T:0.61
Consensus pattern (42 bp):
GTAAATTTGTTTATTTTATTTTTTGTAATTGTTTAGGGTTTA
Found at i:10527614 original size:23 final size:24
Alignment explanation
Indices: 10527572--10527620 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
10527562 CCAAGTTTTA
10527572 TTTTTCATGTTGTTGATTTG-TGT
1 TTTTTCATGTTGTTGATTTGATGT
10527595 TTTTTCAT-TTGTAT-ATTTTGATGT
1 TTTTTCATGTTGT-TGA-TTTGATGT
10527619 TT
1 TT
10527621 GGTTTTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
22 5 0.22
23 13 0.57
24 5 0.22
ACGTcount: A:0.12, C:0.04, G:0.16, T:0.67
Consensus pattern (24 bp):
TTTTTCATGTTGTTGATTTGATGT
Found at i:10528528 original size:7 final size:6
Alignment explanation
Indices: 10528512--10528591 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
10528502 AAAGAATGAA
* * * *
10528512 AAAAAC AAAACG AAAAACT AAAAAG AAAAAG AAAAA- AATAATG AAAAAG
1 AAAAAG AAAAAG AAAAA-G AAAAAG AAAAAG AAAAAG AA-AAAG AAAAAG
* *
10528561 AAAAGAA AAAAAG GAAAAG AAGAAAG AAAAA
1 AAAA-AG AAAAAG AAAAAG AA-AAAG AAAAA
10528592 TCAATAAAGT
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
5 2 0.03
6 38 0.66
7 18 0.31
ACGTcount: A:0.79, C:0.04, G:0.14, T:0.04
Consensus pattern (6 bp):
AAAAAG
Found at i:10528547 original size:13 final size:13
Alignment explanation
Indices: 10528509--10528591 Score: 57
Period size: 13 Copynumber: 6.5 Consensus size: 13
10528499 GAAAAAGAAT
10528509 GAAAAA-AACAAAA
1 GAAAAAGAA-AAAA
**
10528522 CGAAAAACTAAAAA
1 -GAAAAAGAAAAAA
10528536 GAAAAAGAAAAAA
1 GAAAAAGAAAAAA
* *
10528549 -ATAATG-AAAAA
1 GAAAAAGAAAAAA
10528560 G-AAAAGAAAAAAA
1 GAAAAAG-AAAAAA
* *
10528573 GGAAAAGAAGAAA
1 GAAAAAGAAAAAA
10528586 GAAAAA
1 GAAAAA
10528592 TCAATAAAGT
Statistics
Matches: 55, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
11 8 0.15
12 4 0.07
13 27 0.49
14 15 0.27
15 1 0.02
ACGTcount: A:0.78, C:0.04, G:0.14, T:0.04
Consensus pattern (13 bp):
GAAAAAGAAAAAA
Found at i:10530763 original size:11 final size:11
Alignment explanation
Indices: 10530747--10530817 Score: 54
Period size: 11 Copynumber: 6.5 Consensus size: 11
10530737 CTCCTGATCC
10530747 TTTTTTTTTCT
1 TTTTTTTTTCT
*
10530758 TTTTTTTTTAT
1 TTTTTTTTTCT
**
10530769 TTTTAGTTTC-
1 TTTTTTTTTCT
**
10530779 TTTCCTTTTCT
1 TTTTTTTTTCT
*
10530790 TTTTCTTTTTGT
1 TTTT-TTTTTCT
* *
10530802 TTATTTTTTGT
1 TTTTTTTTTCT
10530813 TTTTT
1 TTTTT
10530818 AATTTTTAAT
Statistics
Matches: 46, Mismatches: 12, Indels: 4
0.74 0.19 0.06
Matches are distributed among these distances:
10 7 0.15
11 31 0.67
12 8 0.17
ACGTcount: A:0.04, C:0.08, G:0.04, T:0.83
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:10530799 original size:37 final size:37
Alignment explanation
Indices: 10530744--10530814 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
10530734 AAGCTCCTGA
*
10530744 TCCTTTTTTTTTCTTTTTTTTTTATTTTTAGTTTCTT
1 TCCTTTTTTTTTCTTTTTTGTTTATTTTTAGTTTCTT
*
10530781 TCCTTTTCTTTTTC-TTTTTGTTTATTTTTTGTTT
1 TCCTTTT-TTTTTCTTTTTTGTTTATTTTTAGTTT
10530815 TTTAATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 25 0.81
38 6 0.19
ACGTcount: A:0.04, C:0.11, G:0.04, T:0.80
Consensus pattern (37 bp):
TCCTTTTTTTTTCTTTTTTGTTTATTTTTAGTTTCTT
Found at i:10531151 original size:23 final size:24
Alignment explanation
Indices: 10531125--10531183 Score: 97
Period size: 23 Copynumber: 2.6 Consensus size: 24
10531115 TTTTTGTTGA
10531125 ATTTGT-GAAATTGGTATGAAATT
1 ATTTGTGGAAATTGGTATGAAATT
10531148 ATTT-TGGAAATTGGTATGAAATT
1 ATTTGTGGAAATTGGTATGAAATT
10531171 A-TTGTGGAAATTG
1 ATTTGTGGAAATTG
10531184 TGAAATTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
22 3 0.09
23 31 0.91
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (24 bp):
ATTTGTGGAAATTGGTATGAAATT
Found at i:10531205 original size:20 final size:20
Alignment explanation
Indices: 10531182--10531219 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10531172 TTGTGGAAAT
*
10531182 TGTGAAATTTATGGAATTGG
1 TGTGAAATTTATGAAATTGG
10531202 TGTGAAATTTATGAAATT
1 TGTGAAATTTATGAAATT
10531220 AAAGTGGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (20 bp):
TGTGAAATTTATGAAATTGG
Found at i:10531206 original size:74 final size:71
Alignment explanation
Indices: 10531080--10531220 Score: 167
Period size: 74 Copynumber: 1.9 Consensus size: 71
10531070 TGAATATTGT
* * * *
10531080 GAAATTGATATGGAATTGTTGTGGAAATTATCATATTTTTGTTGAATTTGTGAAATTGGTATGAA
1 GAAATTGATATGAAATTATTGTGGAAATTATCAAATTTATG-TGAATTTGTGAAATT--TATGAA
10531145 ATTATTTTG
63 ATTATTTTG
* * *
10531154 GAAATTGGTATGAAATTATTGTGGAAATTGTGAAATTTATG-GAATTGGTGTGAAATTTATGAAA
1 GAAATTGATATGAAATTATTGTGGAAATTATCAAATTTATGTGAATT--TGTGAAATTTATGAAA
10531218 TTA
64 TTA
10531221 AAGTGGAATT
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
72 15 0.26
74 43 0.74
ACGTcount: A:0.34, C:0.01, G:0.23, T:0.43
Consensus pattern (71 bp):
GAAATTGATATGAAATTATTGTGGAAATTATCAAATTTATGTGAATTTGTGAAATTTATGAAATT
ATTTTG
Found at i:10531922 original size:10 final size:10
Alignment explanation
Indices: 10531907--10531958 Score: 70
Period size: 10 Copynumber: 5.2 Consensus size: 10
10531897 TCAAATTTGA
10531907 ATATTTATGG
1 ATATTTATGG
10531917 ATATTTATGG
1 ATATTTATGG
*
10531927 TTATTTAT-G
1 ATATTTATGG
*
10531936 ACTATTTATGA
1 A-TATTTATGG
10531947 ATATTTATGG
1 ATATTTATGG
10531957 AT
1 AT
10531959 TTATTACATA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
9 1 0.03
10 34 0.94
11 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.15, T:0.52
Consensus pattern (10 bp):
ATATTTATGG
Found at i:10533677 original size:54 final size:55
Alignment explanation
Indices: 10533613--10533806 Score: 200
Period size: 54 Copynumber: 3.5 Consensus size: 55
10533603 AAACTAAAAA
* *
10533613 AAATTATTTTTGTTTAAGGAAAAATTAATATTTCAACTTTTTTCT-CAACTTTTT
1 AAATTATTTTTGTTTAAGGAAAAATTAATATTTCAACTTTTTTCTAAAAATTTTT
* * * * *
10533667 TAATTATTTTTTGTTTAAGG-AAAATTAGATATTT-TA-TTCTTTCTAAAAAATTTG
1 AAATTA-TTTTTGTTTAAGGAAAAATTA-ATATTTCAACTTTTTTCTAAAAATTTTT
** *
10533721 AAATTATTTTCATTTAAGGAAAAATT-ATATTTCAACTTTTTCCTTAAAAATTTTT
1 AAATTATTTTTGTTTAAGGAAAAATTAATATTTCAACTTTTTTC-TAAAAATTTTT
* *
10533776 AAAAATACTTTTGTTTTAAGGAAAAATTAAT
1 -AAATTATTTTTG-TTTAAGGAAAAATTAAT
10533807 CCTTAAAAAA
Statistics
Matches: 111, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
52 6 0.05
53 19 0.17
54 34 0.31
55 28 0.25
56 8 0.07
57 14 0.13
58 2 0.02
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.49
Consensus pattern (55 bp):
AAATTATTTTTGTTTAAGGAAAAATTAATATTTCAACTTTTTTCTAAAAATTTTT
Found at i:10533933 original size:57 final size:56
Alignment explanation
Indices: 10533853--10533993 Score: 135
Period size: 57 Copynumber: 2.5 Consensus size: 56
10533843 TCAAATTGTA
* * *
10533853 AAATTATTTTCATTCAAGTAAAAATTAG-TATTCCAAATTTTTCCTT-AAATTTTTTTG
1 AAATTATTTT-ATTTAAGGAAAAATTAGATATTCCAAATTTTT--TTAAAAATTTTTTG
* *
10533910 AAATTATTTTAGTTTAAGGAAAAATT-GATATTTCAACTTTTTTTAAAAATTTTTTG
1 AAATTATTTTA-TTTAAGGAAAAATTAGATATTCCAAATTTTTTTAAAAATTTTTTG
* * *
10533966 TAGTTATTTTTATTTTGAGGAAAAATTA
1 AAATTA-TTTTA-TTTAAGGAAAAATTA
10533994 CTAGTTTAAC
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
55 2 0.03
56 16 0.23
57 52 0.74
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.50
Consensus pattern (56 bp):
AAATTATTTTATTTAAGGAAAAATTAGATATTCCAAATTTTTTTAAAAATTTTTTG
Found at i:10534118 original size:22 final size:21
Alignment explanation
Indices: 10534077--10534118 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
10534067 AAATTTTTGA
*
10534077 AAAATAAAAAAAAACTTATTC
1 AAAATAAAAAAAAACATATTC
*
10534098 AAAATAAATAAATAACATATT
1 AAAATAAA-AAAAAACATATT
10534119 AATTTAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATAAAAAAAAACATATTC
Found at i:10534145 original size:20 final size:20
Alignment explanation
Indices: 10534104--10534143 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10534094 ATTCAAAATA
* *
10534104 AATAAATAACATATTAATTT
1 AATAAATAACAAAATAATTT
10534124 AATAAATAAGCAAAATAATT
1 AATAAATAA-CAAAATAATT
10534144 AAAAAAAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (20 bp):
AATAAATAACAAAATAATTT
Found at i:10535056 original size:3 final size:3
Alignment explanation
Indices: 10535048--10535072 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10535038 TTTATTTTTT
10535048 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
10535073 AAACTAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:10535448 original size:33 final size:33
Alignment explanation
Indices: 10535397--10535461 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
10535387 CAATAGGATA
*
10535397 ACCTAGATTAAGCTAAAGTTTGAAAATGAAATG
1 ACCTAGATTAAGCTAAAGTTTGAAAATAAAATG
*
10535430 ACCTAGATTGAATC-AAAGTTTGAAAATAAAAT
1 ACCTAGATT-AAGCTAAAGTTTGAAAATAAAAT
10535462 AACTTGGACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 26 0.90
34 3 0.10
ACGTcount: A:0.48, C:0.09, G:0.15, T:0.28
Consensus pattern (33 bp):
ACCTAGATTAAGCTAAAGTTTGAAAATAAAATG
Found at i:10538592 original size:142 final size:142
Alignment explanation
Indices: 10538336--10538620 Score: 525
Period size: 142 Copynumber: 2.0 Consensus size: 142
10538326 AATTGTAGTG
*
10538336 TATATTCAACCACATTATTGGTGCAATTGAAGTTTAGTCTTGCTATACTAGGAACGTAATTTTCT
1 TATATTCAACCACATTATTAGTGCAATTGAAGTTTAGTCTTGCTATACTAGGAACGTAATTTTCT
* *
10538401 TTCATGGATATTTGGATTGCCCCAATTCTATGTCCTAAAGTATTTATAACTTTATCAAAGTACAT
66 TTCAGGGATATTTGGATTGCCCCAATTCTATGTCCTAAAGCATTTATAACTTTATCAAAGTACAT
10538466 ATTCGAAAACTT
131 ATTCGAAAACTT
*
10538478 TATATTCAACCACATTATTAGTGCAATTGAAGTTTAGTCTTGCTATACTAGGAATGTAATTTTCT
1 TATATTCAACCACATTATTAGTGCAATTGAAGTTTAGTCTTGCTATACTAGGAACGTAATTTTCT
*
10538543 TTTAGGGATATTTGGATTGCCCCAATTCTATGTCCTAAAGCATTTATAACTTTATCAAAGTACAT
66 TTCAGGGATATTTGGATTGCCCCAATTCTATGTCCTAAAGCATTTATAACTTTATCAAAGTACAT
10538608 ATTCGAAAACTT
131 ATTCGAAAACTT
10538620 T
1 T
10538621 TAAATAGGCC
Statistics
Matches: 138, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
142 138 1.00
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (142 bp):
TATATTCAACCACATTATTAGTGCAATTGAAGTTTAGTCTTGCTATACTAGGAACGTAATTTTCT
TTCAGGGATATTTGGATTGCCCCAATTCTATGTCCTAAAGCATTTATAACTTTATCAAAGTACAT
ATTCGAAAACTT
Found at i:10541400 original size:35 final size:35
Alignment explanation
Indices: 10541361--10541471 Score: 92
Period size: 35 Copynumber: 3.2 Consensus size: 35
10541351 ATAGAACCTT
10541361 TAGGTTATATTACATTTGCTTAGCATTTTAGATTA
1 TAGGTTATATTACATTTGCTTAGCATTTTAGATTA
* *
10541396 TAGGTTGCATA-TA-GTGTGCATT----TTTATAGAACCTT-
1 TAGGTT--ATATTACATTTGC-TTAGCATTT-TAG-A--TTA
10541431 TAGGTTATATTACATTTGCTTAGCATTTTAGATTA
1 TAGGTTATATTACATTTGCTTAGCATTTTAGATTA
10541466 TAGGTT
1 TAGGTT
10541472 GCATATAGTG
Statistics
Matches: 58, Mismatches: 4, Indels: 28
0.64 0.04 0.31
Matches are distributed among these distances:
32 3 0.05
33 6 0.10
34 7 0.12
35 26 0.45
36 7 0.12
37 6 0.10
38 3 0.05
ACGTcount: A:0.27, C:0.09, G:0.17, T:0.47
Consensus pattern (35 bp):
TAGGTTATATTACATTTGCTTAGCATTTTAGATTA
Found at i:10541425 original size:70 final size:70
Alignment explanation
Indices: 10541346--10541489 Score: 288
Period size: 70 Copynumber: 2.1 Consensus size: 70
10541336 GTGAGCCCAG
10541346 TTTTTATAGAACCTTTAGGTTATATTACATTTGCTTAGCATTTTAGATTATAGGTTGCATATAGT
1 TTTTTATAGAACCTTTAGGTTATATTACATTTGCTTAGCATTTTAGATTATAGGTTGCATATAGT
10541411 GTGCA
66 GTGCA
10541416 TTTTTATAGAACCTTTAGGTTATATTACATTTGCTTAGCATTTTAGATTATAGGTTGCATATAGT
1 TTTTTATAGAACCTTTAGGTTATATTACATTTGCTTAGCATTTTAGATTATAGGTTGCATATAGT
10541481 GTGCA
66 GTGCA
10541486 TTTT
1 TTTT
10541490 CTAGTTTGGT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 74 1.00
ACGTcount: A:0.26, C:0.10, G:0.17, T:0.47
Consensus pattern (70 bp):
TTTTTATAGAACCTTTAGGTTATATTACATTTGCTTAGCATTTTAGATTATAGGTTGCATATAGT
GTGCA
Found at i:10547581 original size:9 final size:10
Alignment explanation
Indices: 10547546--10547578 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
10547536 TTAGTTTGAT
10547546 ATTTAAAAAA
1 ATTTAAAAAA
10547556 ATTTAAAAAA
1 ATTTAAAAAA
10547566 ATTTAAAAAA
1 ATTTAAAAAA
10547576 ATT
1 ATT
10547579 AAACTAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
ATTTAAAAAA
Found at i:10548363 original size:20 final size:20
Alignment explanation
Indices: 10548313--10548361 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
10548303 TTTTTTTAAA
*
10548313 GATTTGTTTATATTCGTTTG
1 GATTTATTTATATTCGTTTG
* *
10548333 GGTTTATTTATATTCGTTTAT
1 GATTTATTTATATTCGTTT-G
10548354 GATTTATT
1 GATTTATT
10548362 ATTTAAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.18, C:0.04, G:0.16, T:0.61
Consensus pattern (20 bp):
GATTTATTTATATTCGTTTG
Found at i:10550360 original size:2 final size:2
Alignment explanation
Indices: 10550353--10550389 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
10550343 TTATGAAACG
10550353 AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10550390 GAGAGTTGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:10550507 original size:33 final size:30
Alignment explanation
Indices: 10550441--10550501 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
10550431 AGATACATAA
*
10550441 ATTTAAAATTTATAGTACAAATTATATATT
1 ATTTAAAATTTAGAGTACAAATTATATATT
* *
10550471 ATTTGAAAGTTTAGAGTATAAATTATATATT
1 ATTT-AAAATTTAGAGTACAAATTATATATT
10550502 TTATTTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 4 0.15
31 23 0.85
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.46
Consensus pattern (30 bp):
ATTTAAAATTTAGAGTACAAATTATATATT
Found at i:10552131 original size:18 final size:18
Alignment explanation
Indices: 10552094--10552132 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
10552084 GGTTCTTCCC
* *
10552094 TCTCTTTCTCTTTAATTT
1 TCTCCTTCTCTTTAACTT
*
10552112 TCTCCTTCTCTTTCACTT
1 TCTCCTTCTCTTTAACTT
10552130 TCT
1 TCT
10552133 GTTTACGTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.31, G:0.00, T:0.62
Consensus pattern (18 bp):
TCTCCTTCTCTTTAACTT
Found at i:10553035 original size:6 final size:6
Alignment explanation
Indices: 10553024--10553058 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
10553014 ATAAAATTAC
10553024 AAATTT AAATTT AAATTT AAATTT AAA-TT AAATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
10553059 CATTCAATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
AAATTT
Found at i:10553233 original size:17 final size:18
Alignment explanation
Indices: 10553213--10553252 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
10553203 ATTTTTATTT
*
10553213 TATAAAAATT-TAAAATA
1 TATAAAAATTAAAAAATA
10553230 TATAAAAATTAAAAAATA
1 TATAAAAATTAAAAAATA
10553248 TATAA
1 TATAA
10553253 TTTGATTCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TATAAAAATTAAAAAATA
Found at i:10553241 original size:16 final size:17
Alignment explanation
Indices: 10553213--10553249 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
10553203 ATTTTTATTT
*
10553213 TATAAAAATTTAAAATA
1 TATAAAAATTTAAAAAA
10553230 TATAAAAA-TTAAAAAA
1 TATAAAAATTTAAAAAA
10553246 TATA
1 TATA
10553250 TAATTTGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TATAAAAATTTAAAAAA
Found at i:10554221 original size:18 final size:18
Alignment explanation
Indices: 10554178--10554234 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
10554168 CCCTCTCTTT
*
10554178 ATATATACACACACACATAC
1 ATATATACACATACAC--AC
*
10554198 ACATATACACATACACAC
1 ATATATACACATACACAC
*
10554216 ATATATATACATACACAC
1 ATATATACACATACACAC
10554234 A
1 A
10554235 CATGTATATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
18 19 0.58
20 14 0.42
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (18 bp):
ATATATACACATACACAC
Found at i:10554225 original size:14 final size:14
Alignment explanation
Indices: 10554184--10554237 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
10554174 CTTTATATAT
*
10554184 ACACACACACATAC
1 ACACATACACATAC
*
10554198 ACATATACACATAC
1 ACACATACACATAC
* *
10554212 ACACATATATATAC
1 ACACATACACATAC
* *
10554226 ATACACACACAT
1 ACACATACACAT
10554238 GTATATATAT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (14 bp):
ACACATACACATAC
Found at i:10554237 original size:20 final size:20
Alignment explanation
Indices: 10554177--10554244 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
10554167 GCCCTCTCTT
*
10554177 TATATATACACACACACATA
1 TATATATACACACACACACA
* * *
10554197 CACATATACACATACACACA
1 TATATATACACACACACACA
*
10554217 TATATATACATACACACACA
1 TATATATACACACACACACA
*
10554237 TGTATATA
1 TATATATA
10554245 TATATATATA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.49, C:0.25, G:0.01, T:0.25
Consensus pattern (20 bp):
TATATATACACACACACACA
Found at i:10554242 original size:18 final size:18
Alignment explanation
Indices: 10554196--10554242 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
10554186 ACACACACAT
*
10554196 ACACATATACACATACAC
1 ACACATATATACATACAC
*
10554214 ACATATATATACATACAC
1 ACACATATATACATACAC
*
10554232 ACACATGTATA
1 ACACATATATA
10554243 TATATATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.49, C:0.26, G:0.02, T:0.23
Consensus pattern (18 bp):
ACACATATATACATACAC
Found at i:10557441 original size:22 final size:22
Alignment explanation
Indices: 10557410--10557454 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
10557400 CATCTTTCAT
*
10557410 GAATAGGTACCTCTTGG-ATGAA
1 GAATAAGTA-CTCTTGGAATGAA
*
10557432 GAATAAGTACTTTTGGAATGAA
1 GAATAAGTACTCTTGGAATGAA
10557454 G
1 G
10557455 CATCATGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.29
Consensus pattern (22 bp):
GAATAAGTACTCTTGGAATGAA
Found at i:10559213 original size:21 final size:22
Alignment explanation
Indices: 10559169--10559222 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
10559159 ATTTAAACAA
*
10559169 TTTATTTTTTTATTTATCAATT
1 TTTATTTATTTATTTATCAATT
10559191 TTTATTTATTT-TTTAT-AATTT
1 TTTATTTATTTATTTATCAA-TT
10559212 TTTATTT-TTTA
1 TTTATTTATTTA
10559223 GCAAAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 5 0.17
21 14 0.48
22 10 0.34
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (22 bp):
TTTATTTATTTATTTATCAATT
Found at i:10559522 original size:6 final size:6
Alignment explanation
Indices: 10559418--10559534 Score: 51
Period size: 6 Copynumber: 19.3 Consensus size: 6
10559408 TACCAGTTAT
* * * * * *
10559418 AATATAA AATAAC AATAAT AATAAT AATAATA AATCAT AA-AAA AATTAA
1 AATA-AA AATAAA AATAAA AATAAA AATAA-A AATAAA AATAAA AATAAA
* * * * * **
10559467 AA-AAA CATAAA AATCAA CATAAAA AATCAA AATCAA AATCAAA ACGAAA
1 AATAAA AATAAA AATAAA AAT-AAA AATAAA AATAAA AAT-AAA AATAAA
*
10559516 AATAAA AAGAAA AA-AAA AA
1 AATAAA AATAAA AATAAA AA
10559535 GGAAAAACCT
Statistics
Matches: 83, Mismatches: 22, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
5 11 0.13
6 57 0.69
7 15 0.18
ACGTcount: A:0.74, C:0.08, G:0.02, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:10560684 original size:40 final size:39
Alignment explanation
Indices: 10560604--10561005 Score: 436
Period size: 40 Copynumber: 10.3 Consensus size: 39
10560594 AGGGATAATG
*
10560604 AACTTTAAAT-TCAAAAGGCTCCTTTAACTAAAGGCAACA
1 AACTTTAAATGTTAAAA-GCTCCTTTAACTAAAGGCAACA
* * * *
10560643 AACTTTAAATGTTGAAAAGCTCATCTCACTAGAGGCAACA
1 AACTTTAAATGTT-AAAAGCTCCTTTAACTAAAGGCAACA
* * * *
10560683 AATTTTAAAT-TCAAAAGCTCCTTTAACCAAAGGTAACGA
1 AACTTTAAATGTTAAAAGCTCCTTTAACTAAAGGCAAC-A
10560722 AA-TTTAAATGTTAAAAGCTCCTTTAAAC-AAAGGCAACA
1 AACTTTAAATGTTAAAAGCTCCTTT-AACTAAAGGCAACA
* * **
10560760 AACTTTAAATGTTAAAAGCACCTTTAACCAAAGGCAATG
1 AACTTTAAATGTTAAAAGCTCCTTTAACTAAAGGCAACA
* * * * *
10560799 AACTTTAAATGTTAAAAGCTCCTCTGACCAGAGGCAGCA
1 AACTTTAAATGTTAAAAGCTCCTTTAACTAAAGGCAACA
* *
10560838 AACTTTAAAT-TCAAAAGCTCCTTTAATTAAAGGCAACA
1 AACTTTAAATGTTAAAAGCTCCTTTAACTAAAGGCAACA
* * * * *
10560876 AACTTTAAATGTTAAAAAGTTCCTTTCACTAGAGGTAAGA
1 AACTTTAAATGTT-AAAAGCTCCTTTAACTAAAGGCAACA
*
10560916 AACTTTAAATGTTGAAAAGCTCCTTTAACTAAAGGCAATA
1 AACTTTAAATGTT-AAAAGCTCCTTTAACTAAAGGCAACA
* * * *
10560956 AACTTTAAATATTGAAAGGCTCCTTTAACCAAAGGTAACA
1 AACTTTAAATGTT-AAAAGCTCCTTTAACTAAAGGCAACA
10560996 AACTTTAAAT
1 AACTTTAAAT
10561006 TCAAAATCGA
Statistics
Matches: 304, Mismatches: 50, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
38 63 0.21
39 107 0.35
40 130 0.43
41 4 0.01
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.28
Consensus pattern (39 bp):
AACTTTAAATGTTAAAAGCTCCTTTAACTAAAGGCAACA
Found at i:10560705 original size:78 final size:77
Alignment explanation
Indices: 10560604--10561011 Score: 476
Period size: 78 Copynumber: 5.2 Consensus size: 77
10560594 AGGGATAATG
* *
10560604 AACTTTAAATTCAAAAGGCTCCTTTAACTAAAGGCAACAAACTTTAAATGTTGAAAAGCTCATCT
1 AACTTTAAATTCAAAA-GCTCCTTTAACTAAAGGCAACAAACTTTAAATGTT-AAAAGCTCCTTT
* *
10560669 CACTAGAGGCAACA
64 AACCAGAGGCAACA
* * *
10560683 AATTTTAAATTCAAAAGCTCCTTTAACCAAAGGTAACGAAA-TTTAAATGTTAAAAGCTCCTTTA
1 AACTTTAAATTCAAAAGCTCCTTTAACTAAAGGCAAC-AAACTTTAAATGTTAAAAGCTCCTTTA
* *
10560747 AACAAAGGCAACA
65 ACCAGAGGCAACA
* * * ** * *
10560760 AACTTTAAATGTTAAAAGCACCTTTAACCAAAGGCAATGAACTTTAAATGTTAAAAGCTCCTCTG
1 AACTTTAAAT-TCAAAAGCTCCTTTAACTAAAGGCAACAAACTTTAAATGTTAAAAGCTCCTTTA
*
10560825 ACCAGAGGCAGCA
65 ACCAGAGGCAACA
* * *
10560838 AACTTTAAATTCAAAAGCTCCTTTAATTAAAGGCAACAAACTTTAAATGTTAAAAAGTTCCTTTC
1 AACTTTAAATTCAAAAGCTCCTTTAACTAAAGGCAACAAACTTTAAATGTT-AAAAGCTCCTTTA
* * *
10560903 ACTAGAGGTAAGA
65 ACCAGAGGCAACA
* * * *
10560916 AACTTTAAATGTTGAAAAGCTCCTTTAACTAAAGGCAATAAACTTTAAATATTGAAAGGCTCCTT
1 AACTTTAAA--TTCAAAAGCTCCTTTAACTAAAGGCAACAAACTTTAAATGTT-AAAAGCTCCTT
* *
10560981 TAACCAAAGGTAACA
63 TAACCAGAGGCAACA
10560996 AACTTTAAATTCAAAA
1 AACTTTAAATTCAAAA
10561012 TCGAGAGGTA
Statistics
Matches: 278, Mismatches: 45, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
77 66 0.24
78 127 0.46
79 18 0.06
80 67 0.24
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (77 bp):
AACTTTAAATTCAAAAGCTCCTTTAACTAAAGGCAACAAACTTTAAATGTTAAAAGCTCCTTTAA
CCAGAGGCAACA
Found at i:10573443 original size:3 final size:3
Alignment explanation
Indices: 10573437--10573473 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
10573427 TTATTATGAG
*
10573437 TAA TAA T-A TAA -AA TAA CAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10573474 CATCATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
2 4 0.13
3 26 0.87
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:10573505 original size:12 final size:12
Alignment explanation
Indices: 10573444--10573560 Score: 64
Period size: 12 Copynumber: 9.6 Consensus size: 12
10573434 GAGTAATAAT
10573444 ATAAAATAACAATA
1 ATAAAATAA-AA-A
*
10573458 ATAATAAT-AATA
1 ATAA-AATAAAAA
* *
10573470 ATAACATCATAAA
1 ATAAAAT-AAAAA
*
10573483 A-AAATTAAAAA
1 ATAAAATAAAAA
*
10573494 ATAACAT-AAAA
1 ATAAAATAAAAA
*
10573505 ATCAACATAAAAA
1 AT-AAAATAAAAA
*
10573518 ATCAAAATCAAAA
1 AT-AAAATAAAAA
*
10573531 TTAAAATAAAAA
1 ATAAAATAAAAA
10573543 ATAAAA-AGAAAA
1 ATAAAATA-AAAA
10573555 A-AAAAT
1 ATAAAAT
10573561 CTACGAAATG
Statistics
Matches: 81, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
11 18 0.22
12 35 0.43
13 20 0.25
14 5 0.06
15 3 0.04
ACGTcount: A:0.73, C:0.07, G:0.01, T:0.20
Consensus pattern (12 bp):
ATAAAATAAAAA
Found at i:10573549 original size:13 final size:13
Alignment explanation
Indices: 10573482--10573556 Score: 57
Period size: 13 Copynumber: 5.9 Consensus size: 13
10573472 AACATCATAA
10573482 AAAAATTAAAAAAT
1 AAAAA-TAAAAAAT
*
10573496 -AACAT-AAAAAT
1 AAAAATAAAAAAT
* *
10573507 CAACATAAAAAAT
1 AAAAATAAAAAAT
* *
10573520 CAAAAT-CAAAAT
1 AAAAATAAAAAAT
*
10573532 TAAAATAAAAAAT
1 AAAAATAAAAAAT
*
10573545 AAAAAGAAAAAA
1 AAAAATAAAAAA
10573557 AAATCTACGA
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
11 6 0.12
12 16 0.31
13 29 0.57
ACGTcount: A:0.76, C:0.07, G:0.01, T:0.16
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:10573555 original size:25 final size:24
Alignment explanation
Indices: 10573483--10573548 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 24
10573473 ACATCATAAA
*
10573483 AAAATTAAAAAATAACATAAAAATC
1 AAAA-TAAAAAATAAAATAAAAATC
* * *
10573508 AACATAAAAAATCAAAATCAAAATT
1 AAAATAAAAAAT-AAAATAAAAATC
10573533 AAAATAAAAAATAAAA
1 AAAATAAAAAATAAAA
10573549 AGAAAAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 12 0.34
25 23 0.66
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (24 bp):
AAAATAAAAAATAAAATAAAAATC
Found at i:10573896 original size:51 final size:52
Alignment explanation
Indices: 10573825--10573926 Score: 136
Period size: 51 Copynumber: 2.0 Consensus size: 52
10573815 CAGAGATCCC
* *
10573825 TAGATTCTGGTGGCCAAAAAATTCAATGGTCATCA-AAAACTTCAAACTTTTT
1 TAGATTCTGGTGGCCAAAAAATTCAACGGTCATCAGAAAA-TTCAAAATTTTT
** *
10573877 TAGATTCTGGT-GCTTAAAAATTCAACGGTCGTCAGAAAATTCAAAATTTT
1 TAGATTCTGGTGGCCAAAAAATTCAACGGTCATCAGAAAATTCAAAATTTT
10573927 CTAGTTTACG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
51 29 0.66
52 15 0.34
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (52 bp):
TAGATTCTGGTGGCCAAAAAATTCAACGGTCATCAGAAAATTCAAAATTTTT
Found at i:10574529 original size:18 final size:18
Alignment explanation
Indices: 10574506--10574541 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10574496 AAAGTAAATT
* *
10574506 AATTAAAATTGATTATGA
1 AATTAAAAGTGATAATGA
10574524 AATTAAAAGTGATAATGA
1 AATTAAAAGTGATAATGA
10574542 TTCAAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33
Consensus pattern (18 bp):
AATTAAAAGTGATAATGA
Found at i:10574701 original size:22 final size:24
Alignment explanation
Indices: 10574673--10574719 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
10574663 TAATTTTTAA
*
10574673 ATTTTAA-AT-TTTTTTATATATT
1 ATTTTAATATATTTTTAATATATT
10574695 ATTTTAATATAATTTTTAATATATT
1 ATTTTAATAT-ATTTTTAATATATT
10574720 TAAATAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 2 0.10
25 12 0.57
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (24 bp):
ATTTTAATATATTTTTAATATATT
Found at i:10575743 original size:18 final size:18
Alignment explanation
Indices: 10575720--10575784 Score: 68
Period size: 18 Copynumber: 3.8 Consensus size: 18
10575710 ATTTAAAATT
10575720 TATTATATTAAAAATAAA
1 TATTATATTAAAAATAAA
*
10575738 TATTATATTAATAGATAAA
1 TATTATATTAA-AAATAAA
*
10575757 T-TTATATT----TTAAA
1 TATTATATTAAAAATAAA
10575770 TATTATATTAAAAAT
1 TATTATATTAAAAAT
10575785 TTTTAAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
13 5 0.13
14 7 0.18
18 19 0.50
19 7 0.18
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
TATTATATTAAAAATAAA
Found at i:10577130 original size:16 final size:17
Alignment explanation
Indices: 10577089--10577131 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
10577079 TATACTAATA
*
10577089 AAAAATATTATAAGATC
1 AAAAATATTATAAAATC
*
10577106 ATAAA-ATTATAAAAT-
1 AAAAATATTATAAAATC
10577121 AAAAATATTAT
1 AAAAATATTAT
10577132 TATGATAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 4 0.18
16 14 0.64
17 4 0.18
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAAATATTATAAAATC
Found at i:10577589 original size:2 final size:2
Alignment explanation
Indices: 10577582--10577611 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
10577572 CAAGTAATTG
*
10577582 AT AT AT AT AT TT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10577612 TAGATAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:10577809 original size:48 final size:48
Alignment explanation
Indices: 10577757--10577853 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
10577747 GTAATTTGAA
*
10577757 GAAAGTATAAATTAGTGTAGGTCTCCTAGTTACAGATTCTACTATTCT
1 GAAAGTATAAATTAGTGTAGGTCTCCTAGGTACAGATTCTACTATTCT
10577805 GAAAGTATAAATTAGTGTAGGTCTCCTAGGTACAGATTCTACTATTCT
1 GAAAGTATAAATTAGTGTAGGTCTCCTAGGTACAGATTCTACTATTCT
10577853 G
1 G
10577854 CGAGGTATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (48 bp):
GAAAGTATAAATTAGTGTAGGTCTCCTAGGTACAGATTCTACTATTCT
Found at i:10579543 original size:22 final size:22
Alignment explanation
Indices: 10579518--10579569 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
10579508 TTAGAGCAAG
10579518 ATTGTATGAAATTAAAACCCTA
1 ATTGTATGAAATTAAAACCCTA
* *
10579540 ATTGTATAAAATTAAGACCCTA
1 ATTGTATGAAATTAAAACCCTA
*
10579562 ATTTTATG
1 ATTGTATG
10579570 TTAATTTAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.37
Consensus pattern (22 bp):
ATTGTATGAAATTAAAACCCTA
Found at i:10582376 original size:14 final size:14
Alignment explanation
Indices: 10582357--10582386 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10582347 TATAATTGCA
10582357 ATAATGTTGAAAAG
1 ATAATGTTGAAAAG
*
10582371 ATAATGTTTAAAAG
1 ATAATGTTGAAAAG
10582385 AT
1 AT
10582387 CTTAGATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (14 bp):
ATAATGTTGAAAAG
Found at i:10613713 original size:21 final size:21
Alignment explanation
Indices: 10613689--10613731 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
10613679 TTATTATCTG
*
10613689 CCTCAAATGTATCCTCCACCT
1 CCTCAAATATATCCTCCACCT
**
10613710 CCTCAAATATATTTTCCACCT
1 CCTCAAATATATCCTCCACCT
10613731 C
1 C
10613732 AAATGTATCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.40, G:0.02, T:0.33
Consensus pattern (21 bp):
CCTCAAATATATCCTCCACCT
Found at i:10613802 original size:18 final size:18
Alignment explanation
Indices: 10613689--10613809 Score: 79
Period size: 18 Copynumber: 6.7 Consensus size: 18
10613679 TTATTATCTG
10613689 CCTCAAATGTATCCTCCA
1 CCTCAAATGTATCCTCCA
* **
10613707 CCTCCTCAAATATATTTTCCA
1 ---CCTCAAATGTATCCTCCA
* **
10613728 CCTCAAATGTATCATTTA
1 CCTCAAATGTATCCTCCA
*
10613746 CCAT-AAATGTATCCCCCA
1 CC-TCAAATGTATCCTCCA
* * *
10613764 CCACAAATTTATCAT---
1 CCTCAAATGTATCCTCCA
*
10613779 CCTCAAATATATCCTCCA
1 CCTCAAATGTATCCTCCA
10613797 CCTCAAATGTATC
1 CCTCAAATGTATC
10613810 AAGAACAAAA
Statistics
Matches: 75, Mismatches: 20, Indels: 13
0.69 0.19 0.12
Matches are distributed among these distances:
15 12 0.16
18 47 0.63
19 1 0.01
21 15 0.20
ACGTcount: A:0.32, C:0.33, G:0.03, T:0.31
Consensus pattern (18 bp):
CCTCAAATGTATCCTCCA
Found at i:10616413 original size:26 final size:26
Alignment explanation
Indices: 10616384--10616436 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10616374 CCGATCTGAT
10616384 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10616410 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10616436 C
1 C
10616437 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10617280 original size:26 final size:26
Alignment explanation
Indices: 10617251--10617303 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10617241 CCGGTCTGAT
10617251 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10617277 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10617303 C
1 C
10617304 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10618182 original size:26 final size:26
Alignment explanation
Indices: 10618143--10618195 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10618133 CCGATCCTAT
*
10618143 CTTAGACTATGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
10618169 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
10618195 C
1 C
10618196 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10618354 original size:892 final size:887
Alignment explanation
Indices: 10616963--10621163 Score: 5322
Period size: 901 Copynumber: 4.7 Consensus size: 887
10616953 ATTTTGTGAC
10616963 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
10617028 TCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
66 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * ** * *
10617093 GTGTGCACACCCCCCGG-CCCCCCAATCATTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
131 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCG
** * * *
10617157 ATGCTCCGGTGATGGTACCCCGGTGAAGAAAAATACGACACCAACACATGCCCGGGCCCAGCATG
196 A---T---G-G-T-G--CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
** * * *
10617222 TGCTATCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
250 TGCTGCCGCAACCCTCAGTCCGATC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
10617287 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGTTCAGCCGGCCAAAGG
314 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * *
10617352 GGCGGGATGCACAAGCCGGGGATCAACCGGGTCCTCCTCTACGTGCTGTCGATCCTGCTGCTGCA
379 GGCGGGATGCGCAAGCCGAGGATC-GCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCA
* ** * * * * * *
10617417 ACCCTCTGTCCAGTCTGATCTTACACTAGGAATGAACTTCGTATGCCTAACCCAACCGATGAAAC
443 ACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
*
10617482 TAACGGGAGGGTGAGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATC
508 TAA-GGGAGCG-G-GCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * **
10617547 GATATGGTGGAAGGTGGGTTTTGTTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGC
570 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGC
* *
10617612 TTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
635 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* ** * * *
10617677 CTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGACATTTTTTGAAATTTTTTTGGAAGGCGT
700 CTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGT
* * *
10617742 TTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAACTTCTA-C
765 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC-AGC
* *
10617806 TAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
829 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
10617865 CACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
10617930 TCAAGGCTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
66 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
*
10617995 GTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCG
131 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCG
* * * *
10618060 ATGGTGCCCCGACGAAGAAAAATGCGGGACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAA
196 ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * ** *
10618125 CCCTCAGCCCGATCCTATCTTAGACTATGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
261 CCCTCAGTCCGAT-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * *
10618190 GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATACG
325 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * * *
10618255 CAAGCCGGGGATCGGTCGGGTCCCCCTGTACGTGCTGCCGAGCCTACTACCGTAACCTTCGGTCT
390 CAAGCCGAGGATC-GCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCT
* *
10618320 GGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-TAAGCGGCGGC
454 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACTAAG-GG-AGC
* * * * *
10618384 GGGGGCGGCGGGCACTACGCCGGCCAGAGAAATC-GGATGCGCAAGCCGGGGATCGATAGGGTGG
517 GGGCG-GGCGGGCACTACGTCGGCTAGAGAGA-CGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
10618448 TAGGTGAGTTTAGGCACATCTTCATATTTTTGTGTTCCAATGCCATTTTTATGGCTTGTAAATTC
580 TAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
10618513 ATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAATATGACTCGTTTTCTATTTTTCA
645 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* **
10618578 CGATTTTTTAAAACTTTTTACGGTTCGAGATTTTGTAAAATTTTTTTGGAAGGAGTTTTGGCCTG
710 CGA-TTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCC
*
10618643 AAACTTGGT-G-TGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
774 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * *
10618706 AAGTATATAAGATTTTTTGACCATTTGAAAAAAATGTCCCCATTTCAGA
839 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
10618755 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGAGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
10618820 TCGAGATTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
66 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
10618885 ATGCGCACACCCCCTCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAAGTTCTCCAGC
131 GTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATC-AGGT-T----C
** *
10618950 GATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCC-AGGTCCAGCA
189 --T-C-C-GGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA-GCCCAGCA
* *
10619014 TATGCTGCCACAA-CC-C--T-CG---G-TC-----C-----A-G---TCCG-AT-CTTAGACTG
248 TGTGCTGCCGCAACCCTCAGTCCGATCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
*
10619054 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
313 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * *
10619119 GGGCGGGATGCGCAAGCCAAAGATCGACTGGGTCCCCCTTTGCGTGCTGCCGATCCTAG-TGCCA
378 GGGCGGGATGCGCAAGCCGAGGATCG-CCGGGTCCCCCTCTACGTGCTGCCGATCCT-GCTACCG
*
10619183 CAACCCGT-GGTCTGGTAC-AATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
441 CAACCC-TCGGTCTGGT-CTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
10619246 AAAC-AAGCGGA-TGGGCGGGC-AGCACTACGTCGG-TCAGAGAAACGGGATGCGCAAGCCGTGG
504 AAACTAAG-GGAGCGGGCGGGCGGGCACTACGTCGGCT-AGAGAGACGGGATGCGCAAGCCGTGG
*
10619307 ATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
567 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
*
10619372 GGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGG
632 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-G
* * ** *
10619437 TTTT-TATTTTTCATGATTTTTGAAACTTTTTTTGGTTCAAGATTTTTTAAAATTTTTTTGGAAG
696 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAG
* ** *
10619501 GATTTTTGGCCCCAAACACGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAAATT
761 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATT
*
10619566 CAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
825 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
10619629 CACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
10619694 TCGCGGTTTCATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCAT
66 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** ** *
10619758 GTGTGCACAACCCCTCCGG-CCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGA
131 GTGCGCAC-ACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCG-
*
10619822 CAATTCTTCGACGATGGTGCCCC-A-GAAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGC
193 ---------G-CGATGGTGCCCCGACG-AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * * * * *
10619885 ATGTGCTACTGCAACCCTCGGTCCAATTCGATCTTAGATTGGGAAAGAACTCCGTATGCTTAGAC
247 ATGTGCTGCCGCAACCCTCAGTCCGA-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
10619950 TGGGAAAGAATTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAG
311 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * *
10620015 AGGGGCGGGATGCGCAAGCC-AGGATCGTCGGGTCCACCTCTATGTG-TTCTCGGTCCTGCTACT
376 AGGGGCGGGATGCGCAAGCCGAGGATCGCCGGGTCCCCCTCTACGTGCTGC-CGATCCTGCTACC
*
10620078 GCAACCCTCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
440 GCAACCCTCGGTCTGGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
10620142 AAACGAGTAGGCCAGCGGGCGGGCGGGCACTATGCCGGCTAGAGAGACGGGATGCGCAAGCCATG
504 AAACTA--AGG-GAGCGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTG
**
10620207 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
566 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
* **
10620272 TGGCTTGTAAATTCATACAGTGGTGTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
631 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
10620337 TTTTCTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
696 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAG
* * *
10620402 GA-CTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTC
761 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
10620466 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTTCAGA
826 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGA
* *
10620529 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGCGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
10620594 TCGAGGTTTGATGTGGGATAGGGGGCAAATATAA-GGCCAAGT-CCAGCACCCATCGCACATCAT
66 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
10620657 GTGCGCACACCCCCTCCGGCCCCCCCGATTGTCGGAACCCCAATGCCATCAATCAGGTTCTCCGG
131 GTGCGCACA-CCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGG-T-T-C--
* *
10620722 TGATGCACTGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCAAGCCCAGCA
189 ---T-C-C-GGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * *
10620787 TGTGCTGCCACAAGCCTCAGTCC-AGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGAC
248 TGTGCTGCCGCAACCCTCAGTCCGA-T-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
10620851 TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCCCAGCCGACCAG
311 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * *
10620916 AGGGGCGGGATGCGTAGGCCGATGATCGACCAGGTCCCCCTCTGCATGCTACCGATCCTGCTACC
376 AGGGGCGGGATGCGCAAGCCGAGGATCG-CCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACC
* * * ** *
10620981 GTAACCCTCGGTTTGGTCTAATCGTAGACTGGGAATGAACTTTGTATGCCTAAGACAACCGACGA
440 GCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
10621046 AA-TGAGTGG-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
505 AACTAAG-GGAGCGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGAT
*
10621109 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
569 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
10621164 TAACTCAACC
Statistics
Matches: 2886, Mismatches: 304, Indels: 221
0.85 0.09 0.06
Matches are distributed among these distances:
862 1 0.00
863 1 0.00
864 1 0.00
865 1 0.00
867 1 0.00
871 63 0.02
872 211 0.07
873 112 0.04
874 174 0.06
875 2 0.00
876 185 0.06
877 5 0.00
878 3 0.00
881 2 0.00
882 3 0.00
887 1 0.00
889 1 0.00
890 229 0.08
891 216 0.07
892 330 0.11
893 3 0.00
894 1 0.00
895 5 0.00
896 87 0.03
897 13 0.00
898 89 0.03
899 209 0.07
900 212 0.07
901 383 0.13
902 211 0.07
903 124 0.04
904 3 0.00
908 1 0.00
909 1 0.00
910 1 0.00
911 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (887 bp):
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCG
ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCAGTCCGATCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
AAGCCGAGGATCGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGG
TCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACTAAGGGAGCGGGC
GGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
Found at i:10619475 original size:26 final size:26
Alignment explanation
Indices: 10619446--10619497 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10619436 GTTTTTATTT
* *
10619446 TTCATGATTTTTGAAACTTTTTTTGG
1 TTCAAGATTTTTGAAAATTTTTTTGG
*
10619472 TTCAAGATTTTTTAAAATTTTTTTGG
1 TTCAAGATTTTTGAAAATTTTTTTGG
10619498 AAGGATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.06, G:0.13, T:0.58
Consensus pattern (26 bp):
TTCAAGATTTTTGAAAATTTTTTTGG
Found at i:10619953 original size:26 final size:26
Alignment explanation
Indices: 10619917--10619969 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10619907 CCAATTCGAT
*
10619917 CTTAGATTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
10619943 CTTAGACTGGGAAAGAATTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
10619969 C
1 C
10619970 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:10620847 original size:26 final size:26
Alignment explanation
Indices: 10620818--10620870 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10620808 CCAGTCCGAT
*
10620818 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10620844 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10620870 C
1 C
10620871 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10624121 original size:873 final size:865
Alignment explanation
Indices: 10621159--10642955 Score: 17783
Period size: 896 Copynumber: 24.4 Consensus size: 865
10621149 CTACGTGCCA
* * * * * * * *
10621159 ATGCCTAACTCAACCCACAAAACTAGCGTACGGGTGCTCAGCTGACCAGAGGGGCAGGATGCGTA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
** * * **
10621224 AGCCGGGGATCGACCGGGTCCCTCTCTGCGTGCTGCCGATCCTACCACCGCAACCCTCGGTCCGG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* *
10621289 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AA--A-CGAGCGGGCG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
10621350 GGC---GGGCACTACGTCGGCCAGAGAGACGGGATGCG-AAGCCGTGGATCGATAGGGTGGTAGG
196 GGCGGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
10621411 TGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATAC
261 TGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
10621476 AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
325 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * *
10621541 TTTTAAAACTTTTTACAGTTTGAGATTTTTTTAAATTTTTTCAGAAGGAG-TTTGGCCCCAAACC
390 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
10621605 TGCTAGACGTGATCCTTCTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
455 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
10621670 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATGGCTACTGGCAG
520 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
10621735 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATA-
585 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
10621799 GGGGCCAAGATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCC
650 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * * *
10621864 CTGATCATCGGAACCCCAATGCCGCCAGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCTG
715 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC---CGA------G-CGATGGTGCCCCG
* * * ** * *
10621929 GCAAAGAAAAATGTGGCACCAATACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTC-GATCC
770 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-TCC
* *
10621993 GATCCGAT-CTTAGACTGGGAATGAACTCCGT
834 AATCCAATGCTTAGACTGGGAATGAACTCCGT
* * * *
10622024 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGTAAGATGCGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * ** * * * * *
10622089 AGCAGAGGATCGACCAGGTCCCCCTCTGCGTGTTGTCGATCCTGCTGCCGTAACCCTTGGTCCGG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* * * *
10622154 TCTGATCTTAGACTGGGAATGAACTCGGTATGCCTAAACCAACTGACGAAACGAGCGGGCGGGCG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
* * * *
10622219 GGCGGGTGGGCGGGCACTACGTCGGCCAGTGA-AAGGGATGAGCAAGCCGTGGATCGATAGGGTG
196 GGC-----GGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
** *
10622283 GTATATGGGTTTAGGCACATCTTCATATTTCT-ATGTGCCAATGCCATTTTTATGACTTGTAAAT
256 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGA--TGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
10622347 TTATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCATGACGACTCGTTTTCTATTTTT
319 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * *
10622412 CATGATTTTTGAAACTTTTTATGGTTC-AGGATTTTCTAAAATTTTTTTGGAAGGTGTTTTGGCG
384 CACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
*
10622476 CCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
448 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
10622541 CGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTA
513 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
10622606 CTGGCACCAAACCTGTCAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
578 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
**
10622671 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGCACACCCCC
643 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
*
10622736 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCAATG
708 CGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-G---C-G--ATG
* * * *
10622801 GTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCACAAGCC
762 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* ** ** *
10622866 TCGGTCTGATCTGAT-CTCAGACTGGGAATGAACTCCGT
827 TCAGTCCAATCCAATGCTTAGACTGGGAATGAACTCCGT
* ** * * * *
10622904 ATGCTTAAGTCAACCCATAAAATGAGCATGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGAGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* ** * * *
10622969 AGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCGGG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* *
10623034 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC-
* * * * *
10623099 GGTGGGCGG-GTGGTTACTACG-CTGGCCAGAGA-AAGGGATGAGCAAGCTGTGGATCGGTAGGG
195 ---GGGCGGAG-GG-CACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
10623161 TGGTAGATGCGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
254 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GATGCCAATGCCATTTTTATGGCTTGTAAA
* *
10623226 TTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTT
318 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
** *
10623291 TCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
383 TCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * * * *
10623356 CCAAACTTGGTAGAAGTGATCCTTCTATTTTTTTTTTTGCATGCACAAAAAACTTCAGCAAAAAA
448 CCAAACTTGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * **
10623421 ATCGAAGTGTGCAAGATTTTGTGACCATTTGAAAACGGTGTCCCCATTTCAGACACTTTAATGGC
511 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* ** *
10623486 TACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACAGGGTGTGAGTTCTCAAGGTTTGAT
576 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
10623551 GAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCC
641 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACAC
**
10623616 CCCCCGGCCCTCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGATGGTGCCC
704 CCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAGCGATGGTGCCC
** * * *
10623680 CGGTGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGCAACCCTCAGTC
768 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTC
10623745 CAATCCAAT-CTTAGACTGGGAATGAACTCCGT
833 CAATCCAATGCTTAGACTGGGAATGAACTCCGT
* * * * * *
10623777 ATGCCTAAGTCAACTCACGAAATGAGCGTGCGGGCACCCAGCAGGCC-GAGGGGCAGGATGCACA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * ** * *
10623841 AGTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCATGCTATCACAACCCTCGATCCGG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* * * *
10623906 TCCT-TTCTTACACTGGGAAGGAACTCCGTATACCTAAGCCAACCGACGAAATGAGCGGGCCGAC
131 T-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC-GG--G-C
*
10623970 GGGCGGGCAGGAGGGCACCT-CGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGG
191 GGGCGGGC-GGAGGGCA-CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
10624034 TGGTAGATGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAA
254 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGA-TGCCAATGCCATTTTTATGGCTTGTAAA
* *
10624099 ATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTT
318 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
** * * * ** *
10624164 TCACGATTTTCAAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGAAAAGTTTTTTTGC
383 TCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
*
10624228 CCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
447 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
10624293 TCCAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
512 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
10624358 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTTTTGAGGTTTGATG
577 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
10624423 AGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCGCACATCATGTGCGCACACCCC
642 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * *
10624487 TCGGCCCTCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTTCGGCGATGCTCCGACGAT
707 CCGGCCC-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC-TC--CGA------G-CGAT
** * * * * *
10624552 GGTGCCCCGGTGAAGAAAAAGGTGGCACCAGCACATGCCTGAGCCCAGCATTTGCTGTCGCAACC
761 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-C
* * *
10624617 CTCGGTCCGGTCCCATCTTAGACTGTGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGT
825 C-C--T-CAG-----TC-----C----AAT---C-C--AATGCTTAGACTGGGAATGAACTCCGT
* *
10624682 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGGGTG--GGATGCGC
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG-GCAGGATGCGC
** * ** * * * * * * *
10624745 AAATCGGGGATCGGTCGGGTCCTCCTCTATGTGCTGCCAATCTTGCTACGGTAACCCTCTGTCTG
65 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCG
* * *
10624810 GTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATAAGCGAGCGGGC
130 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
* * * *
10624875 GGGC---GGGCACTATGTCGGCCAGAGAGATGGGACGCGCGAGCCGTGGATCGATAGGGTGGTAG
195 GGGCGGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
10624937 GTGGGTTTAGGCACATCTTCATATTTCTGAGTGTCAATGCCATTTTTATGGCTTGTAAATTCATA
260 GTGGGTTTAGGCACATCTTCATATTTCTGA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
10625002 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCCAGATGAGTCGTTTTCTATTTTTCACGA
324 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * * *
10625067 TTTTCAAAACTTTTTACGTTTCGAGATTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
389 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* *
10625132 TTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAG
454 TTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
10625197 TGTAAAAGATTTTGTGACCATTTGAAAAAAGTG-CCCCATTTTAGACACTTTAACGGCTACAGGC
518 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
10625261 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
583 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
10625326 AGGGGGCCAATATAAGTGCCAAGTACCAGAACCCATCGCACATCATGTGCGCAC-CCCCTCGGCC
648 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-C
* * * * * * ** *
10625390 CCCCCGATTGCCGGAACCCCGATGCCGCCGATCAGGTTCTCCGA-CGATGTTGCCCCGGTGAAGT
712 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAGCGATGGTGCCCCGACGAAGA
* * ** *
10625454 AAAATACGGCACAAGCACATGCCC--G---AGC--GT--T---GCAACCCTCTA-TCC-GGCCTG
777 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-AGTCCAATCC-A
10625505 ATG-TTAGACTGGGAATGAACTCCGT
840 ATGCTTAGACTGGGAATGAACTCCGT
** * * * * * * *
10625530 ATGCCTAAGTCAACTAACGAAACAAACGTGTGGGCGTTCAGCCTGCCAGAGGGGCGGGATGTGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
** * *
10625595 AGCCGGGGATCGACCGGGTCCCCCTCTTCGTGCTGTCGATCCTGCTGCCGCAA-CCT-GGTCCGG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
** * * * *
10625658 TCCAATCCTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAATGAGCGGGCCGGCG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC--G--GGCG
* * * *
10625723 GGCGGGCAGGAGGGCACCT-CGTCGACCAGAGAGACGGGATGCGTAAGCCATAGATCGATAGGGT
192 GGCGGGC-GGAGGGCA-CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
10625787 GGTAGGTGGGTTTAGGCACATCTTCTTATTTCT-ATGTGCCAATTCCATTTTTATGGCTTGTAAA
255 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGA--TGCCAATGCCATTTTTATGGCTTGTAAA
* * * *
10625851 TTTATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTT
318 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
10625916 TCACAAATTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAACGAGTTTTGGCC
383 TCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
10625981 CAAAACTTGGTAGACGTGATCCTGGTATTTTTGTTGGCATGCA-AAAAAACATTCTGCTAAAAAC
448 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAAC
* *
10626045 TCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCT
512 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
10626110 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGGTGAGTTGTCGAGGTTTGAA
577 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCGAGGTTTGAT
*
10626174 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCC
641 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* *
10626239 CCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGATCAGGTTCTCCGACGATGCTCCGACG
706 CC-CGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA------G-CG
** *
10626304 ATGGTGCCCCGACGAAGAAAAATGCAACACCAGCACATGCCCGTGCCCAGCATGTGCTGCCGCAA
759 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
10626369 CCCTTGGTCTAGTCCAATCTTAGACTGGGAATGCACTCTGTATGCTTAGACTGGGAATGAACTCC
824 CCC----TC-AGTCCAA---T---C--------CA------ATGCTTAGACTGGGAATGAACTCC
10626434 GT
864 GT
* * ** * * *
10626436 ATGCCTAAGTGAACCCACGAAACGAGCGTACGGGTACTCAGTCGACCAGAGGGGCGGGATGCGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * ** * * *
10626501 AGCCGGGGATC-GACTGGATCCCCCTCTGTATGCTGCCAATCCTGCTACCGCAACCCTCTGTCCG
66 AGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCG
* * ** * * * * ** **
10626565 ATCTGATATTAGACTTTGAATGAACTCCATATGCATAAGTCGAGTGACG-AA--A-----CAAGC
130 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
* *
10626622 GGGC---GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTG
195 GGGCGGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
10626684 GTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGACATATTTATGGCTTGTAAATTCATA
260 GTGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * ** * *
10626749 GAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCATTACGACTCGTTTTTTATTTTTCATGA
324 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * * * * *
10626814 TTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTTGGTAGGAGTTTTGGACCCAAAC
389 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
10626879 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGT
454 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
10626944 GTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACGTTAATGGCTACTGGCG
519 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
**
10627009 GCAAACAAGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
584 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
10627073 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCACCCCCGGC
649 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCGGC
* * * * *
10627138 CACCCGATCGCCGGAACCCCAATACCGCCGGTCAATTTCTCCGGTGATGCTCCGA-CGATAGTGC
712 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTC-A-------GGT--T-CTCCGAGCGATGGTGC
* * * * *
10627202 CCCGACGAAGAAAAATACGACACCAGCATATGCCCGAGCCCAGCATGTGCTGCTGAAACCCTCGA
766 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-A
*
10627267 TCCGATCTAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGT
830 ---G------TC-----C----AAT---C-C--AATGCTTAGACTGGGAATGAACTCCGT
** * * * *
10627327 ATGCCTAAGTCAACCCATAAAACAAGCGTGCGGGCGCTCAACCAGCTAGAGGGGCAGGATGCGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * * * **
10627392 AGCCGGGGATCGATCGGATCCCCCTATTCGTGCTGCCGATCTTGCTGCCGCAACCCTTGGTCTAG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* **
10627457 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAATGGGCGGGCA
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC-
**** * * * ** * *
10627522 CTATGTA-TGC-CTATGTCAACCCATAAAACGAGCGTGTGGGCGATGCGCAAGCCACAAAACGAG
195 GGGCGGAGGGCACTACGTC-GGCCA-GAGA-GA-C-----GG-GATGCGCAAG--------C---
* ** * * ** * *
10627585 CGTGCGAGCACTCAACCGACTAGAGG-GGTAGGATGCG-CAAGCCAGGGATCGGCCGGGTCCTTC
239 CGT--G-G-A-T----CGA-TAG-GGTGGTAGG-TGGGTTTAGGCA--CATC-TTC--AT-ATT-
* *** ** *
10627648 TCTGTATGCTACCAAT-CC-TGTTGTCGAAACCCTCTGTCTGATCCGAT-CTTAGACTGGGAATG
285 TCTG-ATG---CCAATGCCAT-TT-T--TATGGCT-TGT-AAATTC-ATAC--A-A-T-GG--T-
* * * ** * * * ** **** **
10627710 AACTCCGTATGCCTAAGCCAACCGATGAAACG-AAC-CGGC-GGACGGGCGGGCGGGC-ATTACG
331 --C-CCTTAAGCCT---TC-A-CG-TG-AA-GTTTCATGGCAAGAC-GACTCGTTTTCTATT-TT
* * ** * **** * * * * ** ** **** * *
10627771 TCGGCCA---GAGAGACGGGATGC-G--CAAG-CTGTGGATCGATAGGGT-GGTAGGTAGGTTTA
383 TC-ACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA-AAATTTTTTCGGAAGG-A-GTTTT
* * ** ** * * * * *
10627828 GG-CAC-ATCTTCATATTTC-TACATGCCAATGCCATTTTT-ATGGCTTGCA-AATTCATACAAC
444 GGCCCCAAACTTGGTA-GACGT-GAT-CC-TTG-TATTTTTGTTGGCATGCACAA---A-A-AA-
** * * ** * * **** * *** ** * * *
10627888 GGTC-CCTTAAGCCTTC-ACATGATGTTTCATG-GCAAGTAGACTCGTTT--TTTATTTTTCACG
498 ATTCAGCTAAAAAC-TCGA-A-G-TG-TACAAGATTTTGT-GAC-CATTTGAAAAAAGTGTCCCC
* * * * *** * * * *
10627948 ATTTTCA-AAACTTTTTACGG-TTC-GG--G--ATTTTTTAAAATTTTTTCAAAAGGAGT-TTTG
556 A-TTTCAGACAC-TTTAATGGCTACTGGCAGCAAACCTGTAAAA---TCTC-AAATG-CTCTTT-
* * * * * * *** * **** * *
10628005 GCCCCAAACTTGGTAGATGTGA-TCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAA
613 ------AA---GG-GGGTGTGAGTTCTCG-A----GGTTTG-ATG-A-GGGATAGGGGGC-CAAT
* * *** * * * **
10628069 ACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAATGTGTC-C-CCATTTTAGACACTTTAA
659 A-T--AAG-G-GCCA-A----GT-ACCA---GCACCCAT-CG-CACATCATGTGCG-CAC----A
* ** * ** ** * ** * * ** ** *
10628131 TTGCTACTGG-CAGCAAACTTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-TTCGAG
703 --CCCCCCGGCCCCCCGA-TCGTCGGAA-CCCCAATGC-C-----GTCGGTCAG-GTTCTCCGAG
* * **** * * * * * * * * *
10628193 CTTTGAAGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCAC---CCATC-A-CACATCAT
757 C---GATG-GTG--CCCCGACGAAGAAAAATG-C-GGCACCAGCACATGCC--CGAGCCCAGCAT
* * * * * * * ** * **
10628253 GTG-TGCACACCCCCCGACCCCCCGATCGCCGGAACCCCAATGC--CG-CCGGTCAGGTTCTCCG
812 GTGCTG------CCGCAACCCTCAG-T--CC--AA-TCCAATGCTTAGACTGGGAATGAACTCCG
10628314 -
865 T
* * * *** * * * **
10628314 --G-CGATGGTGC--CCCAATG-AA-GAAAAATGC-GGCAC-CAGCACATGCCCGAGCCCAGCAT
1 ATGCCTA-AGT-CAACCC-ACGAAACG-AGCGTGCGGGCGCTCAGC-C-GGCCAGAG--GGGCA-
* * ** * * * ***** * *
10628370 GTGCTGTCGCAACCCTCGG-TCTGATCCGATCTTAGGCTGGGAATGAACT-CCG-T-ATGC--CC
57 G-GATG-CGCAAGCCGGGGATC-GGTCGGGTCCCCCTCTGCG--TG--CTGCCGATCCTGCTGCC
* *** * ** * * * *** *
10628429 AAGTCAACCCACGAAACGAGCATGTGGGCGTTCAG-CCGGCCAGTG--GGGCGAGATGCGC-AAG
115 --G-CAACCCTCGGTCCG-G--TCTGATC-TT-AGACTGG-GAATGAACTCCG-TATGC-CTAAG
* * *** * *** *** ** * **
10628490 CCGGGGATCGGTCGGGTCCCCCTCTATGTGCTATCAATCCTGC-TATTGCAACCCT-CAGTCTGG
169 CC----AAC---C--G----ACGAAATGAGCGGGCGGGCGGGCGGAGGGC-A--CTAC-GTC-GG
* * * * * * *
10628553 TCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCGATGAAACGAGCAGGCG-GGC
216 CCAGA---GAGAC--GG---G-A-T--GC--G-C-AAG----CCG-TGGATCGA-TAGG-GTGGT
* * * ** * *** * * * *
10628617 GGGCGGGCTGGCTCTACGC-CGGC--CAGAGAGACGGGATGTGCAAGCTGTGGATCGATAGGGTG
258 AGGTGGG-T---T-TAGGCACATCTTCATA-TTTC-TGATG-CCAA----T-G--CCAT----TT
* * *** * * * * *
10628679 GTAGGTGGGTT-TAGGCACATCTTCATATTTTTGCATGCC--AATACCATTTTTATGGCTTGTAA
304 TTA--TGGCTTGTA---A-A--TTCATA-CAATG-GTCCCTTAA-GCC---TTCA---CGTG-AA
* * * * * ** * * *
10628741 -ATTCAT-ACAATGGTC-CCTTAACCCTTCACATGAAGTTTCATGGCAAGATGACTCATTTTCTA
351 GTTTCATGGCAA--GACGAC-T---CGTTTTC-T--A-TTT--T-TCACGAT---T--TTTG--A
** * * * *
10628803 TTTTTCATGATTTTCGAAACTTTTTGTGGTTCGGGATTTTTTTAAAAATTTTTTTTGG-AGGATT
396 ---AAC-T--TTTT----AC---G----GTTCGAGA-TTTTTT-AAAA-TTTTTTCGGAAGGAGT
* * * *
10628867 TTTGGACCCAAACTTGGGTAGACGTGATCCTTGTATTTTTCTTGGAAATGCACAAAAACATTCAG
441 TTTGGCCCCAAACTT-GGTAGACGTGATCCTTGTATTTTTGTTGG-CATGCACAAAAAAATTCAG
* *
10628932 CTAAAAACTCG-AGTGTACAGGCATTTTGTGACCATGTTG-AAAAAGTGTCACCATTTCCAGACA
504 CTAAAAACTCGAAGTGTACAAG-ATTTTGTGACCAT-TTGAAAAAAGTGTCCCCATTT-CAGACA
* * *
10628995 CTTTAATGGCTACTTGGCAGCAAACCTCGTAAAATCTCAAATCCTTTTTAAAGGGGGTGTGACTT
566 CTTTAATGGCTAC-TGGCAGCAAACCT-GTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTT
*
10629060 CTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCTAGCACCCATCGCACATC
628 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC-AGCACCCATCGCACATC
** * * *
10629125 ATGTTTGCACACCCCCATTGGCCCCCCCGATCGTCGGAGCCCCAATGCCGCCGGTCAGGTTCTCG
692 ATGTGCGCACACCCCC--CGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC-
* * * *
10629190 GCGTTGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACGAGCTCATGCCCGAGCCCAGC
753 -C---G----AGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
10629255 ATGTGTTGCTGCAACCCTCAGTCTGGTCCGATCTTAGGCTGAGAATGAACTTCGTATGCTTAGAC
810 ATGTGCTGCCGCAACCCTCA---------G-TC-----C----AAT---C--C-AATGCTTAGAC
10629320 TGGGAATGAACTCCGT
850 TGGGAATGAACTCCGT
*
10629336 ATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGTG-A-GATGCG
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG-GG-GCAGGATGCG
* * * * * * * * *
10629399 CAAGCCGGGGATCGACTAC--ATCCCCCTCTACGTGCTGTCGATACTACTGCCGTAACCCTTGAT
64 CAAGCCGGGGATCG-GT-CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT
* *
10629462 CCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
127 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCG
* * * *
10629527 GGCGGGCGAACGGGCAATACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGGTAGGGTT
192 GGCGGGCGGA-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
10629592 GTTGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTTATGGCTTGTAAATT
256 GTAGGTGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATT
*
10629657 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTC
320 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
*
10629722 ACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
385 ACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
*
10629787 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA-TCG
450 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
10629851 AAGTGTACAAGATTTTGTGACAATTTGAAAACAAGTGTCCACATTTAAGACAC-TTAATGGCTAC
515 AAGTGTACAAGATTTTGTGACCATTTGAAAA-AAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
10629915 TGGCAAGCACACTTGTAAAATCTCAAATGCTCTTTAAGGGGCTAT-AG-TCTCGAGGTTTGAATG
579 TGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG-ATG
* * * * **
10629978 AGGGATAGGGGGCC-ATAGAAGGGCCAAGTATCAGCAACCCATCGC-TATCATCTAGCGCA-ATA
642 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-ACCCATCGCACATCATGT-GCGCACACC
* * *
10630040 CCCC-GACCCCCGCTCGCCGG-ACCCCAATG-CGTCGGTCAGGTTCTCTGGCGATGGGCTCCGGC
705 CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC---CGA---------GC
* * * * *
10630102 GATGGTGCCCCAATGAAAAAAAATCGCGGCA-CAGCACATGCCCGAGCCCAGCATGTGCTACCGA
758 GATGGTGCCCCGACGAAGAAAAAT-GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
** * ** * **
10630166 AACCCTTGGACCGGTCCGAT-CTTAGACTGGGAATGAACTCTAT
822 AACCCTCAGTCCAATCCAATGCTTAGACTGGGAATGAACTCCGT
* *** * * *
10630209 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAATTGGCTAGAGGGGTAAGATGCGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * * * * ** * *
10630274 AGCCGGGGGTCGGTCGGGTCCTCCTCTGTGTGCTACCAATCCTGTTGTCGCAACCCTCTATCTGA
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
** * * * *
10630339 TCCAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AA--A-CGAGCAGGCG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
* *
10630400 GGC-GA--GCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGG
196 GGCGGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
10630462 TGGATTTAGGCACATCTTCATATTTCTGCATGCCAATGCGATTTTTATGGCTTGTAAATTCATAC
261 TGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
10630527 AATGGTCCCTTAAGCCTTCACATGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCACGAT
325 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * *
10630592 TTTTTAAACTTTTTAAGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACA
390 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
10630657 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATACAAAAATTCAGCTAAAAACTCGAAGTG
455 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
10630722 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTAAGACACTTTAATGGCTACTGGCAG
520 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
10630787 CAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGAGATAG
585 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
10630852 GGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGACCCC
650 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
*
10630916 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCA
715 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC---CGA------G-CGATGGTGCCCCG
* * * *
10630981 ATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCG
770 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCA
* * **
10631046 GTCCGAT-CTTAGACTGGGAATGAACTTTGT
835 ATCCAATGCTTAGACTGGGAATGAACTCCGT
* * * * * ** *
10631076 ATGCCTAAGTCAACCCACAAAACGTGTGTGCGGGCGCTCAGCCGACAAGAGGGGTGGGATACGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
** * * * * * * * * * * * *
10631141 AGTTGAGGATCGGCCGAGTCCCCCTCTACGTGCTGTCAATCCTACTGCTGTAATGCCT-GATCTG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA-CCCTCGGTCCG
* * ** *
10631205 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAAG-GGGT
130 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
* * * * * * *
10631269 GGACGGGCGGGCACTACGTCGGCTAGAGAGATGGGATGCACAAACCGTGGATCGATATGGTGGTA
195 GGGC-GGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
10631334 GGTGGGTTTAGGCACACCTTCATATTTCT-ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
259 GGTGGGTTTAGGCACATCTTCATATTTCTGA--TGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
10631398 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTTTATCTTTCAC
322 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
10631463 GATTTTTTGAAACTTTTTACGGTTCGAGATTTTGTAAAATTTTTTTGGAAGAAGTTTTGGCCCCA
387 GA-TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
10631528 AACTT-GT--ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
451 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * * *
10631590 ATTATATAAGATTTTTTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTG
516 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
10631655 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGG
581 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
10631720 ATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCAG
646 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * *
10631785 CCCACTCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCGGCGATGGTGC
711 CCC-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA------GCGATGGTGC
* * * *
10631850 CCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGG
766 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG
* ** **
10631915 CCCGGTCTGAT-CTTAGACTGGGAATGAACTCCGT
831 TCCAATCCAATGCTTAGACTGGGAATGAACTCCGT
* *
10631949 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCTAGAGGGGCAGGATGCGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * * *
10632014 AGTCGGGGATCGGCCGGGT--CAC-C--C-T-CT-ACGA----GCTGCCGTAACCCTCGGTCTGG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* * * * * * *
10632067 TCCGATCTTAGACTTGAAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
* **
10632132 GGTCGAAGGGCGGGCACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAAGT
196 GG-C----GGAGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
10632196 CGTAGGTGGGTTTAGGTACATCTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAAT
255 GGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GATGCCAATGCCATTTTTATGGCTTGTAAAT
*
10632261 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
319 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* *
10632326 CACGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCA
384 CACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
10632390 CCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACA-TCTGCTAAAAAC
448 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAAC
* * *
10632454 TCGAAGTGTACAAGATTTTGTGCCCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAATGGCT
512 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
10632519 ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-CGGGTGTGAGTTCTCGAGGTTTGATG
577 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * * *
10632583 AGGGATAAGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCAAATCTTTTGCGCACACCCC
642 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* *
10632648 CCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTTAAGTTCTCCGGTGATGCTCCGATGATT
707 CCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC---GA-G---CGATG---
* * * * * * *
10632713 GTGTCGCGATGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAACATGTGCTGCCACAACCC
762 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC
* * *
10632778 TCGGTCCAGTTTGATCTTAGACTGGTAATGAAATCAATATGCTTAGACTTGGAATGAACTCCAT
826 -C--T-CA----G-TC-----C---------AATCCA-ATGCTTAGACTGGGAATGAACTCCGT
* * *
10632842 ATGCCTAAGTCATCCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * * * ** * ** *
10632907 GGCCGGGAATCGGCCGGGTCCCCCTTTACGTGCTGCCGATCCTGTTGTTGCAACCTTTAGTCCAG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* * * * * *
10632972 TCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGATGAAACGAGAGGGTGGGCG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
* * *
10633037 GGCGAGCGGGCTAGCACTACGCCGGCCAGAGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
196 GGCG-G-AGG---GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
10633102 GTCA-GTGGGTTTAGGCACATCTCCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
256 GT-AGGTGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
10633166 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTT
319 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * * * * * *
10633231 CATTATTTTTGAAACTTTTTCCGGTTCGGGATGTTTTAAAATTTTTTCGGAAGTATTTTTGGTCC
384 CACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* *
10633296 CAAACTTGGTAGACCAT-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACT
449 CAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
10633360 CGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTA
513 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
10633425 CTGGCATCAAACCTGTAAAATCGCAAATGCTCTTTACGGGGGTGTGAGTTCTCGAGGTTTGATAA
578 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
10633490 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCT
643 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-
* * ** *
10633555 CCGACCCCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAACTTCTCTGACGATAATCTGGTGAT
707 CCG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC---CG---A----GCGAT
* * *
10633620 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACC
761 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-C
* *
10633685 CTCGGTCCTATCTGATCTTAGATTAGGAATGAACTCAGTATGCTTAGAATGGGAATGAACTCCGT
825 C-C--T-C-A---G-TC---------CAAT---C-CA--ATGCTTAGACTGGGAATGAACTCCGT
* * *
10633750 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCCCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * ** * *
10633815 AGCCGGGGATCGG-CCGGTCCCCTCTCTGCATGTTAACGATCCTGCTGTCGCAACCCTCGGTCTG
66 AGCCGGGGATCGGTCGGGTCCCC-CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCG
* * * *
10633879 ATCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGGC
130 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA---G-CGGGC
* *
10633944 GGGCGGGCGGACGGGCGAGCGGGCATTACGTTGGCCAGAGAGACGGGATGCGCAAGCCATGGATC
191 GGGCGGGCGGA-GGGC-A-----C--TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
10634009 GATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGC
247 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGC
* *
10634074 TTGTAAATTTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTT
311 TTGTAAA-TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * ** * * * *
10634139 TCTATTTTCCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTCAAAATTTTTTTGGAAGGTG
375 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
* * * *
10634204 TTTTGGCCCCAAGCTTGGTACACGTGATCCTTGTATTTTTGTTGTCATGCACAAAAAAATTCACC
440 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
10634269 TAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
505 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
10634334 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-TGCTTTAAGGGGGTGTGAGTTCTCGAG
570 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-CTTTAAGGGGGTGTGAGTTCTCGAG
*
10634398 GTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
634 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
10634463 CACACCCCCCCCCCCGGCCGACCCGATCGTCGGAACCCCAGTGCCGCCGGTCAGGTTCTCCGACG
699 CACA-----CCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CG
* * * *
10634528 ATGCTCCGGCGATGGTGCCACGATGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATG
755 A-------GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
** * * ** **
10634593 TGCTATCGCAACCCTTAGTTCGGTCGGAT-CTTAGACTGGGAATGAACTCCGT
813 TGCTGCCGCAACCCTCAGTCCAATCCAATGCTTAGACTGGGAATGAACTCCGT
* * * * * * **
10634645 ATGTCGAAGTCAACACACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTACA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * * * * **
10634710 ACCCGGGGATCGGCCGGGTCCCCGTCTACGTGCTGCCGATCCTGCTGTCGTAACCTTCAATCCGG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* * * * *
10634775 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAAAGTGAGGGCGGGCG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
* * * * *
10634840 GGC---GGGCACTAC-CCTGACCAGAGAGACGGGATGTGCAAGCAGTCGATCGATAGGGTGGTAG
196 GGCGGAGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
10634901 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG--ATTTTCATGGC----AAGA--CA-
260 GTGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAA-ATTCAT
* ** * *** **
10634957 AC--TTGT-TTTTTATTTTTCA--TG-A-TTT--T--CAA-A--ACT--TTTT-T-TGGTT--CG
323 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
10635002 ------G-GA---TTT----TT----------TAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
388 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * **
10635043 CTTGGTAGACATAATCCTTGTATTTTTGTTGGCCTGCACAAAAAACATTCAGCTAAAAACTTAAA
453 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAA
10635108 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
517 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * * *
10635173 CAACTAACCTGTAAAATCTCAAATGCTTTTTAAGGGTGTGTGAGTTCTAGAGGTTTGATGAGGGA
582 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
10635238 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGAGCGCACACCCCCCGGC
647 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
*** * *
10635303 CCCCTCGATCGTTAAAACCCCAATGCCGTCAGTCAGTTTCTCCGACGATGCTTCGGCGATGGTGC
712 CCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-------GCGATGGTGC
* * * ** **
10635368 CCCAACGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGTC-TGTGCTATCATAACCCTCG
766 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG-CATGTGCTGCCGCAA-CC-C-
*
10635432 GTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
827 -TCAG-TCCAATC-----C---------A------ATGCTTAGACTGGGAATGAACTCCGT
* * * * * * * * *
10635493 ATGCCCAAGTCAACTCATGAAACAAGCGTGCGGGCCCTTAGCCGGCCAGGGGGGCGGGATGCGTA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * ** * * *
10635558 AGCCGAGGATTGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCTACAAGCCTCAGTCCGA
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* * *
10635623 TCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAGCCGACGAAATGAGCGGGCGGGCG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
* * * ** *
10635688 GGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGCTTTGATAGGGTGGTAG
196 GG-CGGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
10635753 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG--ATTTTCATGGC----AAGA--CA-
260 GTGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAA-ATTCAT
* ** * *** * **
10635809 AC--TTG-CTTTTTATTTTTCA--TG-A-TTT--T--CAA-A--A--C-TTTT-TGTGGTTCA-G
323 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
10635855 ------G--A--TTTT----TT--AAAATTTTT--------TT-GGAAGGAGTTTTGGCCCCAAA
388 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
10635895 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCCTGCACAAAAAAAAATTCAGCTAAAAACTCGA
453 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC--AAAAAAATTCAGCTAAAAACTCGA
*
10635960 AGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
516 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * * *
10636025 GCAGCTAACCTGTAAAATCTCAAATGCTTTTTAAGGGTGTGCGAGTTCTTGAGGTTTGATGAGGG
581 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
10636090 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCTGG
646 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
***
10636155 CCCCCTCGATCGTTAAAACCCCAATGCCGTCGGTCAGGTTCTCAGACGATGCTTCGGCGATGGTG
711 CCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC---CGA-------GCGATGGTG
* * * * * * * **
10636220 CCCCGACGAATAAAAATGCAGCACCAGCACATGCCCAAGCTCAGCCTATGCTGTCATAACCCTCA
765 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCA
10636285 GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
830 GTCC-A----ATC-----C---------A------ATGCTTAGACTGGGAATGAACTCCGT
* * * ** * *
10636346 ATGCCCAAGTCAACTCACGAAACAAGCGTGCGGGCGCTCAATCGGCCAGGGGGGCGGGATGCGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * * * * * *
10636411 AGTCGAGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACTGCAAGCCTCAGTCCGA
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* *
10636476 TCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
* * * * *
10636541 GGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGTTTGATAGGGTGGTAG
196 GG-CGGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
10636606 GTGGGTTTAGGCACATCTTCATATTTCT-ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
260 GTGGGTTTAGGCACATCTTCATATTTCTGA--TGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
10636670 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTT-TGATTTTTCAC
323 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCAC
** * * *
10636734 GATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAA-GATTTTTGGCCCCAA
387 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
*
10636798 ACTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
452 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
10636863 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTAG
517 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
10636928 TAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGC
582 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
10636993 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT-TGGCGCACACCCCCCAG
647 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-GCGCACACCCCCCGG
* * * * * * *
10637057 CCCCTTCGATCGTCGGAACCCAAATGCCGCCGGTCAAGTTCTCCG-GCGA---TGCTCCGGCGAT
711 CCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAGCGATGGTGCCCCGACGAA
* ** * * * * * * **
10637118 G----GTGCCCCAGCAAAGAAAAATG--C-AGCACCAGCATGTACTACCGCAACCCTCGGTCCGG
775 GAAAAATGCGGCA-C-CAG-CACATGCCCGAGC-CCAGCATGTGCTGCCGCAACCCTCAGTCCAA
* * *
10637176 TCCGAT-CCTAGACTTGGAATGAACTCCGT
836 TCCAATGCTTAGACTGGGAATGAACTCCGT
*
10637205 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCAGGATGCGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * ** *
10637270 AGCCGGGGATCGGCCTGGTCCCTCTCTGCATGCTATCGATCTTGCTGCCGCAACCCTCGGTCCGG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* * *
10637335 ACTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCA
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT--G-A-GCGGGCG
* * * * * **
10637400 GGCGGGCAGACGGGCACTATGCCGACCAGAGAGACGGGATGCACAAGCTTTGGATCGATAGGGTG
192 GGCGGGCGGA-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
10637465 GTCGGTGGGTTTAGGGACATCTTCATATTCCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
256 GTAGGTGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATT
*
10637530 CATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
320 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
10637595 ATGATTTTTGAAACTTTTTGCGGTTTCG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
385 ACGATTTTTGAAACTTTTTACGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * *
10637659 C-AACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTC
449 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
10637723 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
514 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
10637788 TAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAG
579 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * *
10637853 GGATAGGGGGCCAATATAAGGACCAAGTATCAGCACCCATCGCACAACATGTGTGCACACCCCCC
644 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * *
10637918 GGCCCCCCGATCGCCGAAACCCCAATGCCGTTGGTCAGATTCTCGGCGATGCTCCGACGATGGTG
709 GGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC--CGA------G-CGATGGTG
** * ** * * *
10637983 CTTCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTATTGTCGTAACCCTCG
765 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCA
10638048 GTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGT
830 GTCC-A----ATC-----C--------AA-T--G----CTTAGACTGGGAATGAACTCCGT
* *
10638109 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * * * * *
10638174 ATCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCTTGCTACCGCAACCATCGGTCCGA
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* * *
10638239 TCCT-ATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGC
131 T-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
* * *
10638303 --G-GGAGGGCACTATGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
195 GGGCGGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
10638365 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
260 GTGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
10638430 CAATGGT-CCTTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTGTATTTTTCACG
324 CAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* **
10638494 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTCAG-CCCAAA
388 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * *
10638558 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCATAAAAAAATTTAGCTAAAAAGTCGAAG
453 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
10638623 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATTGCTACTGGT
518 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
10638688 AGCAAACCTGCAAAATCTCAAATTCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
583 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
10638753 AGGGGGCCAATATAAGGACCAAGTATCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCC
648 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* ** ** *
10638818 CCCACGATTGTCGGAACTGCAATGCTTTCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
713 CCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA------G-CGATGGTGCC
* * * *
10638883 TCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGT
767 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGT
10638948 CCGATCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
832 CC-A----ATC-----C---------A------ATGCTTAGACTGGGAATGAACTCCGT
* *
10639007 ATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* ** * * * * * *
10639072 AGCTGGGGATCGACCGGGGCCCCCTCTACGTGCTGTCAATCCTGCTGCCGTAACCCTCGGTCTGG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
** * ** * * * *
10639137 TCCAATCTTAGACTGGGAATAAACTCCGTATGGGTAATCCAACCGATGAAACGAGCGGACGGGCA
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC-
** * *
10639202 GGTGGACAGGCA-GGCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATAGATAGGGT
195 -G-GG-C-GG-AGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
10639266 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
255 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
10639331 TCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCCTGGCAAGACGACTCGTTTTTTATTCTT
319 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * *
10639396 CATGATTTTTGAATTTTTTTGA-GGTTCGGGATTTTTAAAAATATTTTT-GGAAGGAGTTTTGGC
384 CACGATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGC
* * * *
10639459 CCCAAACATGGTAGACGTTATCCTTGTATTTTTGTTGGTATGCACAAAGAAATTCAGCTAAAAAC
447 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * **
10639524 TCGAAGTCTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCTTATTTCAGACACTTTAATGGCT
512 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
10639589 ACTGGCAGCAAACCTGTAAAATATCAAATGCTCGTTAAGGGGGTGTGAGTTCTCAAGGTTTGAGG
577 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
** * *
10639654 AGGGATAGTTGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCGTACACCCC
642 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * *
10639719 ACGGCCCCCCCGATCGTCGGAACCCTAATGCCGTCTGTCAGGTTCTCCGACGATGCTTCGCCGAT
707 CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA------G-CGAT
* * * * * * *
10639784 GGTGACCCGATGAAGAAAAATGCAGCCCCAGCACATG-TCGAATCCCAGCATGTGCTGCCGTAAC
761 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG-AGCCCAGCATGTGCTGCCGCAAC
*
10639848 CCTCAGTCCGATCGGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGAAATGAACTCCG
825 CCTCAGTCC-A----ATC-----C---------A------ATGCTTAGACTGGGAATGAACTCCG
10639913 T
865 T
* * * * * ** *
10639914 ATACCTAAGTCAACACACAAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGTGGGATGCACA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * * * *
10639979 AGCCGAGGATTGGTCGGGTCCCCTTCTGCGTGCTACCGATCCTGCTACAGCAACCCTCGGTCTGG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* *
10640044 TCTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
* * * * * * *
10640109 GGCATGCGGGCACTATGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATTGATAGGGTGGTAG
196 GGC-GGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
10640174 GTGGGTTTAGGTACATCTTCATATTTCT-ACGTTCCAATGCCATTTTTATGGCTTGCAAATTCAT
260 GTGGGTTTAGGCACATCTTCATATTTCTGA--TGCCAATGCCATTTTTATGGCTTGTAAATTCAT
10640238 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
323 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * *
10640303 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAG
388 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
10640368 CTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGATG
453 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
10640433 CGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTTAGACACTTTAATGGCTACTGGC
518 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
10640498 AGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAGGGAT
583 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
10640563 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCC
648 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-C
* * *
10640628 CCCCCGATTGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGACAATGGTGCC
712 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-G---CG---ATGGTGCC
* * ** * * *
10640693 CCAACGAAGAAAAATACGGCACCAGCACATGCCAAATCCCAGCATGTGCTGCCGTAACCCTCGGT
767 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-
*
10640758 TCCGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCTGAGACTGGGAATGAACTCCGT
831 T-C---C-AATC-----C----AATG-----C---T--T-AGACTGGGAATGAACTCCGT
* * * *
10640818 ATGCCTAAGTCAACCCACGAAATGAGAGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* ** * * * * * *
10640883 AGTCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCGATCCTCCTGCCGCAACACTTGGTCTGG
66 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
* * * * * *
10640948 GCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGC-GGC---TG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
* * *
10641009 GGC---GGGCACTACGCCGGCTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
196 GGCGGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
10641071 TGGGTTTAGGTACATCTTCATATTTCTGCTCGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
261 TGGGTTTAGGCACATCTTCATATTTCTGAT-GCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
10641136 GATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGAT
325 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * *
10641201 TTTTGAAACTTTCTGCGGTT-TAGGATTTTTTAAAATTTTTTGGGAAGGATTTTTGGCCCTAAAC
390 TTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
10641265 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AATG
454 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-G
*
10641329 TGTACAAGATATTTTGTGAGCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTG
518 TGTACAAG--ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
10641393 GCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
581 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
10641458 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCGCATCATGTGCGCACACCCCCTTG
646 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC--C
* * * * *
10641523 GGACCCCCGATCGTCGGAACCCTAATGCCGCCAGTCAGGTTCTCTGGCAATGCTCCGGCAATGGT
709 GGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC---CGA-G---C-G--ATGGT
* *
10641588 GCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
764 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA----C
*
10641653 GGTCCGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGT
825 ---CC--TCAG-TC-----C----AAT---C--CA-ATGCTTAGACTGGGAATGAACTCCGT
* * * *
10641715 ATGGCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGC-CT
1 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGC-
* * * *
10641779 AAGCTGGGGATCGGTCGGGTCCCCCTCT--GTGCTGCCGATCCTGCTGTCACAACCCTCAGTCCG
65 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCG
* * * *
10641842 GT-TCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAATGAGCAGGCGGG
130 GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGG
* *
10641906 CGGGCGG-GTGAGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCG--A------
194 CGGGCGGAG-G-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
** *
10641962 TAGGT---TTTAGTTACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTC
257 TAGGTGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
10642024 ATACAATGGTCCCTGAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCA
321 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
10642089 TGATTTTTGAAACTTTTTACGGTTCTG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCCC
386 CGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * *
10642153 AAACTTGGTAGATGTAATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAAAAAAT-AGCTAAAAA
450 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC----ACAAAAAAATTCAGCTAAAAA
* * *
10642217 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTTAGAAACTTTAATGGC
511 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
10642282 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGAT
576 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * * *
10642347 GAGGGATAGGGGGCCAATATAAGGTCCAAGTA-CAGCACCCATCACCCATCATGTGTGGACACCC
641 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * *
10642411 CCCGGCTTCCCCGATCGTCGGAACCCTAATGCCGTCGGTCCGGTTCTCCAGCAATGCTCCGGTGA
706 CCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-G--A-G---C---GA
* * * * *
10642476 TGGTGCCCCGACGAAGAAAACTGCAGCACCAACACATGCCCGAGCCCAGCATGTGCAGCCGCATC
760 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* *
10642541 CCTCAATCC-GT---ATGCTTAGACTGGGAATGAACTCCGT
825 CCTCAGTCCAATCCAATGCTTAGACTGGGAATGAACTCCGT
* * * * * * * *
10642578 ATGCCTAAGTCAACCCAC-ATAACGATCTTACGGGCGCTCA-ACTGCCAAAGGGGAAGGATGCGT
1 ATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGC
* * * * *
10642641 AAGCCGAGGATCTGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCACCCCTCAGTCCG
65 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCG
* * * ** * * * *
10642706 ATTTAATCTTAGAAGGGGAATGAACTCCATATGCCTAAGCCAACCGATG-AA--A-CGAGTGGGC
130 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
* * * * *
10642767 GGGC---GGGCACTACGTCGGCTAGAGAGGCGGGATGCGCAAGTCATGGATCGATAGGGTTGTAG
195 GGGCGGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * **
10642829 GTGAGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGATATTTTTATGGCTTGTAAATTCATA
260 GTGGGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
**
10642894 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCA
324 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
10642956 TGAGTTTCTA
Statistics
Matches: 17337, Mismatches: 2465, Indels: 2258
0.79 0.11 0.10
Matches are distributed among these distances:
821 2 0.00
822 109 0.01
823 3 0.00
824 1 0.00
826 72 0.00
827 195 0.01
828 1 0.00
836 2 0.00
840 3 0.00
843 1 0.00
844 1 0.00
847 56 0.00
848 255 0.01
849 56 0.00
850 2 0.00
851 18 0.00
852 204 0.01
853 668 0.04
854 80 0.00
855 385 0.02
856 47 0.00
857 41 0.00
858 5 0.00
859 187 0.01
860 20 0.00
861 72 0.00
862 79 0.00
863 533 0.03
864 113 0.01
865 571 0.03
866 307 0.02
867 548 0.03
868 250 0.01
869 50 0.00
870 39 0.00
871 195 0.01
872 376 0.02
873 717 0.04
874 223 0.01
875 78 0.00
876 20 0.00
877 222 0.01
878 229 0.01
879 219 0.01
880 560 0.03
881 11 0.00
882 210 0.01
883 9 0.00
884 65 0.00
885 27 0.00
886 40 0.00
887 11 0.00
888 12 0.00
889 4 0.00
890 6 0.00
891 372 0.02
892 665 0.04
893 166 0.01
894 125 0.01
895 287 0.02
896 823 0.05
897 692 0.04
898 542 0.03
899 82 0.00
900 26 0.00
901 26 0.00
902 276 0.02
903 653 0.04
904 452 0.03
905 633 0.04
906 451 0.03
907 608 0.04
908 358 0.02
909 47 0.00
910 37 0.00
911 48 0.00
912 20 0.00
913 7 0.00
914 3 0.00
915 2 0.00
916 106 0.01
917 350 0.02
918 1 0.00
919 2 0.00
920 6 0.00
921 103 0.01
922 8 0.00
924 5 0.00
925 1 0.00
926 2 0.00
927 2 0.00
930 1 0.00
931 3 0.00
932 15 0.00
933 5 0.00
934 4 0.00
935 1 0.00
937 6 0.00
938 3 0.00
939 6 0.00
940 4 0.00
941 3 0.00
942 6 0.00
943 1 0.00
944 7 0.00
945 3 0.00
946 3 0.00
947 7 0.00
948 9 0.00
949 4 0.00
950 1 0.00
951 5 0.00
953 4 0.00
954 4 0.00
955 8 0.00
956 1 0.00
957 24 0.00
958 11 0.00
959 10 0.00
960 17 0.00
961 15 0.00
962 17 0.00
963 11 0.00
964 12 0.00
965 6 0.00
966 8 0.00
967 22 0.00
968 18 0.00
969 4 0.00
972 4 0.00
973 7 0.00
974 5 0.00
975 3 0.00
976 2 0.00
977 15 0.00
978 12 0.00
979 3 0.00
982 7 0.00
983 11 0.00
984 18 0.00
985 10 0.00
986 7 0.00
987 4 0.00
988 17 0.00
989 24 0.00
990 6 0.00
991 17 0.00
992 5 0.00
993 3 0.00
994 8 0.00
995 14 0.00
996 16 0.00
997 7 0.00
998 1 0.00
999 33 0.00
1000 21 0.00
1001 29 0.00
1002 14 0.00
1003 36 0.00
1004 30 0.00
1005 26 0.00
1006 30 0.00
1007 14 0.00
1008 26 0.00
1009 12 0.00
1010 28 0.00
1011 17 0.00
1012 8 0.00
1013 10 0.00
1014 19 0.00
1015 7 0.00
1016 4 0.00
1017 7 0.00
1018 20 0.00
1019 6 0.00
1020 17 0.00
1021 19 0.00
1022 4 0.00
1023 5 0.00
1024 7 0.00
1025 21 0.00
1026 10 0.00
1027 5 0.00
1030 7 0.00
1031 7 0.00
1034 9 0.00
1035 10 0.00
1036 18 0.00
1037 6 0.00
1038 4 0.00
1039 10 0.00
1040 7 0.00
1041 13 0.00
1042 10 0.00
1043 14 0.00
1044 20 0.00
1045 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (865 bp):
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGG
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
GGCGGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAGCGATGGTGCCCCGACGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAATCCAATGCTT
AGACTGGGAATGAACTCCGT
Found at i:10624672 original size:26 final size:26
Alignment explanation
Indices: 10624633--10624685 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10624623 CCGGTCCCAT
*
10624633 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
10624659 CTTAGACTAG-GAATGAACTCCGTATG
1 CTTAGACT-GTGAATGAACTCCGTATG
10624685 C
1 C
10624686 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTATG
Found at i:10626423 original size:26 final size:26
Alignment explanation
Indices: 10626387--10626439 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10626377 CTAGTCCAAT
* *
10626387 CTTAGACTGGGAATGCACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10626413 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10626439 C
1 C
10626440 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10627316 original size:26 final size:26
Alignment explanation
Indices: 10627278--10627330 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10627268 CCGATCTAAT
*
10627278 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
10627304 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10627330 C
1 C
10627331 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10629326 original size:26 final size:26
Alignment explanation
Indices: 10629287--10629339 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10629277 CTGGTCCGAT
* *
10629287 CTTAGGCTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
10629313 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
10629339 C
1 C
10629340 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:10632833 original size:26 final size:26
Alignment explanation
Indices: 10632793--10632845 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10632783 CCAGTTTGAT
10632793 CTTAGACTGGTAATGAAATCAATATG
1 CTTAGACTGGTAATGAAATCAATATG
* *
10632819 CTTAGACTTGG-AATGAACTCCATATG
1 CTTAGAC-TGGTAATGAAATCAATATG
10632845 C
1 C
10632846 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTAATGAAATCAATATG
Found at i:10633739 original size:26 final size:26
Alignment explanation
Indices: 10633701--10633753 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10633691 CCTATCTGAT
*
10633701 CTTAGATTAGGAATGAACTCAGTATG
1 CTTAGAATAGGAATGAACTCAGTATG
* *
10633727 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCAGTATG
10633753 C
1 C
10633754 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCAGTATG
Found at i:10633955 original size:16 final size:16
Alignment explanation
Indices: 10633934--10633967 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
10633924 GACGAAACGA
*
10633934 GCGGACGGGCGGGCGG
1 GCGGACGGGCGAGCGG
10633950 GCGGACGGGCGAGCGG
1 GCGGACGGGCGAGCGG
10633966 GC
1 GC
10633968 ATTACGTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.26, G:0.65, T:0.00
Consensus pattern (16 bp):
GCGGACGGGCGAGCGG
Found at i:10635473 original size:26 final size:26
Alignment explanation
Indices: 10635444--10635496 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10635434 CCGATCCAAT
10635444 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10635470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10635496 C
1 C
10635497 CCAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10636326 original size:26 final size:26
Alignment explanation
Indices: 10636297--10636349 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10636287 CCGATCCGAT
10636297 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10636323 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10636349 C
1 C
10636350 CCAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10638089 original size:26 final size:26
Alignment explanation
Indices: 10638060--10638110 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10638050 CCGATCTGAT
10638060 CTTAGACTAGGAATGAACTCCGTATA
1 CTTAGACTAGGAATGAACTCCGTATA
*
10638086 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
10638111 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:10638987 original size:26 final size:26
Alignment explanation
Indices: 10638958--10639010 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10638948 CCGATCCTAT
10638958 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10638984 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10639010 C
1 C
10639011 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10639905 original size:26 final size:26
Alignment explanation
Indices: 10639865--10639915 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10639855 CCGATCGGAT
* *
10639865 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
10639891 CTTAGACTGGAAATGAACTCCGTAT
1 CTTAGACTGGAAATGAACTCCGTAT
10639916 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:10640801 original size:26 final size:26
Alignment explanation
Indices: 10640772--10640821 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
10640762 GTCGGATCTT
10640772 AGACTGGGAATGAACTCCGTATGCTG
1 AGACTGGGAATGAACTCCGTATGCTG
10640798 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
10640822 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTG
Found at i:10641717 original size:26 final size:26
Alignment explanation
Indices: 10641666--10641717 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10641656 CCGGTCCGAT
*
10641666 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10641692 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10641718 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10644031 original size:823 final size:822
Alignment explanation
Indices: 10642143--10648137 Score: 3717
Period size: 823 Copynumber: 7.0 Consensus size: 822
10642133 TCAGAAGGAG
* * * * * *
10642143 TTTTGGTCCCAAACTTGGTAGATGTAATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAAAAAAT
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGC-----ACAAAAAATT
* * * *
10642208 -AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTTAGAAA
61 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGAAA
* *
10642272 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTA
126 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
10642337 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTA-CAGCACCCATCACCCATCATGT
191 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
* * * * * * *
10642401 GTGGACACCCCCCGGCTTCCCCGATCGTCGGAACCCTAATGCCGTCGGTCCGGTTCTCCAGCAAT
256 GTGCACACCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGAT
* * * *
10642466 GCTCCGGTGATGGTGCCCCGACGAAGAAAACTGCAGCACCAACACATGCCCGAGCCCAGCATGTG
320 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTG
*
10642531 CAG-CCGCATCCCTCAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
385 CAGTCCACATCCCTCAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
10642595 CATAACGATCTTACGGGCGCTCAACTG-CCAAAGGGGAAGGATGCGTAAGCCGAGGATCTGTCGG
450 CATAACGAGCGTGCGGGTGCTCAAC-GACCAGAGGGGCAGGATGCGCAAGCCGGGGATC-GTCGG
** **
10642659 GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCACCCCTCAGTCCGATTTAATCTTAGAAGGGG
513 GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCA-CCCTCAGTCCGATCCAATCTTAGACTGGG
* * * *
10642724 AATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGCACTACGTCGGCTAG
577 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGGCGGGCACTACGTCGGCCAG
* * * * *
10642789 AGAGGCGGGATGCGCAAGTCATGGATCGATAGGGTTGTAGGTGAGTTTAGGCACATCTTCATATT
642 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* **
10642854 TCTGCGTGCCAATGATATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
707 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
*
10642919 AAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCATGAGTTTCT-AAGC
772 AAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCATGATTTTCTAAAGC
* *
10642969 TTTTGGCCCTAAACTTCGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAACATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAA-ATTCAGC
10643034 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGAAACTTT
65 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGAAACTTT
* * * *
10643099 AATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTAGAGG
130 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
10643164 TTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTA-CAGCACCCATCACCCATCATGTGTGG
195 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGC
* * * ** * *
10643228 ACACCCCCCGGCTTCCCCGATCGTCGGAACCCTAATGCCATCGGTCCGGTTCTCCAGCAATGCTC
260 ACACCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTC
* *
10643293 CGGCGATGGTGCCCCGACGAAGAAAACTGCGGCACCAACACATGCCCGAGCCCAGCATGTGCAG-
324 CGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCAGT
10643357 CCACATCCCTCAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACATA
389 CCACATCCCTCAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACATA
* * * * *
10643422 ACGATCTTGCGGGTGCTCAACGACCAGAGGGGAAGGATGCGTAAGCCGAGGATCTGTCGGGTCCC
454 ACGAGCGTGCGGGTGCTCAACGACCAGAGGGGCAGGATGCGCAAGCCGGGGATC-GTCGGGTCCC
* ** *
10643487 CTTCTGCGTGCTGCCGATCCTGCTACCGCACCTCTCAGTCCGATTTAATCTTAGAATGGGAATGA
518 CCTCTGCGTGCTGCCGATCCTGCTACCGCACC-CTCAGTCCGATCCAATCTTAGACTGGGAATGA
* * * * *
10643552 ACTCCATATGCCTAAGCCAACCGATGAAACGAGTGGGC-GGCGGGCACTACATCGGCCAAAGAGA
582 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGGCGGGCACTACGTCGGCCAGAGAGA
* * * *
10643616 CGGGATGCGCAAGTCGTGGATCGATAGGGTTGTAGGTGAGTTTAGGCACATCTTCATATTTCTGC
647 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
**
10643681 GTGCCAATGATATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
712 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
10643746 TCATGGCAAGACGACTTATTTTCTATTTTTCATGATTTTCT-AAGC
777 TCATGGCAAGACGACTTATTTTCTATTTTTCATGATTTTCTAAAGC
* * *
10643791 TTTTGGCCCCAAACTTCGTAGACGTGATCCTTTTACTTTTGTTGACATGCACAAAAACATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAA-ATTCAGC
10643856 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGAAACTTT
65 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGAAACTTT
*
10643921 AATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
130 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
10643986 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGC
195 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGC
* ** * *
10644051 ACATCGCCTCCGGCCCCCCCGATCGCCATAA-CCCAATGCCGTCGATCAGGTTCT-C--CG--G-
260 ACA-C-CCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGC
* * * * *
10644109 T-----GATGGTGCCGCGACGAA-AAAAATGCGACACCAACACATGCCCGAGCCTGACAACCCTC
322 TCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCC---C-AGCAT-
* * *** * * *
10644168 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCATATG
382 -GTGCAGTCC-A-C----A-T--CCCTCAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
10644233 CCTAAGTCAA-CCAAAGAAACGAGCGTGCGGGTGCTCAACCGGCTAGAAGGACGGGATGCGTAAG
436 CCTAAGTCAACCCACA-TAACGAGCGTGCGGGTGCTCAA-CGACCAGAGGGGCAGGATGCGCAAG
* * * * *
10644297 CTGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCC-AGT
499 CCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCG-CACCCTCAGTCCGA-T
*
10644361 CCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGG
561 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GG--GGGC-G
* * * * * * * **
10644426 ACGAGCGGGCACTACGTCGGCTAGAGAGACGGGATGTGCATGTCATTGATTGATAGGGTCATAGG
621 --G-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * **
10644491 TGAGTTTAGGCACATCTTCATATTTCTACCTGCCAGTGCCATTTTTATGTTTTGTAAATTCATAC
683 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
** *
10644556 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
748 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCATGAT
*
10644621 TTTTTAAA-C
813 TTTCTAAAGC
** * ** * ** ***
10644630 TTTTTGCGCTTCAGGA-TTTTTCA-A---AATTTTTTTGGAAGGAGTT-TTGGCCCCAAACTTGG
1 -TTTTG-GCCCCA-AACTTGGT-AGACGTGATCCTTTT---A-TTTTTGTTGG---C--A--T-G
* * **** * * * **** **** * * * **
10644689 TAGACGTGATCCTGGT-AGTTTTGTTGGCATGTACAAAATAGTTCAGCTAAAAACTCGAAGTGTA
50 CACAAAAAATTCAGCTAAAAACTCAAAG--TGTACAAGAT--TT-TG-T---GAC-C-ATTTG-A
* ** ** * * ** **
10644753 CAAGATTTTGTGACCATTT--GAAA---AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
103 -AAAAAGTT-TCCCCATTTCAGAAACTTTAA-TGGCTAC-TGGCAG-CA----AA---C--CT--
* * * ******* * * *
10644813 CAGTAAACCTGTAAAAT-CTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGATGG
152 -A-TAAA-ATCTCAAATGCTC---T--TTAAGGGGGTG---TGAGTTCTCGAGGTTTGATGAGGG
* *
10644877 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
206 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCGG
* * * * ** * * *
10644942 CCCCCCGATCGACGGAACCCTAGTACCGTTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTAC
271 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGC
* * * * * * *
10645007 CCCGACGAAGAAAAATATGGCTCCAACACATGCTCGAGCCTAACATGTGCTGCTGCA-A-CCCTC
336 CCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCAG-TCCACATCCCTC
** * * *
10645070 GGT-CGTGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTTAACCCACGA-AACGAGC
400 AATCCGTAT--G--CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-ATAACGAGC
* * * * * * *
10645133 GTGAGGGTGCTCAACCGGCCAGAGGGG-GGGATACGCAAGCTGGGGATCAGCCAGGTCCCCCTCT
460 GTGCGGGTGCTCAA-CGACCAGAGGGGCAGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCT
** * * * * * * *
10645197 GCAAGGTGCCGATCCTGCTGTCGGAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAGCTTC
523 GCGTGCTGCCGATCCTGCT-ACCGCACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCC
* * * *
10645262 GTATGCCTAAGCCAACCGACGAAATGA----GCTGGCGGGCACTACGACGACCAGAGAGACGGGA
587 GTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
* *
10645323 TGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATCTACGTGCC
652 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
* * * * *
10645388 AATGACATTTTTATGGCTTGTAAGTTCATACAATGGTCCATTAAACCTTCACGTGAAGTTTTATG
717 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
*
10645453 GCAAGAC-ACTTGTTTTCTATTTTTCACGATTTTTGAAAGATTTTACGGTTCGAGATTTTTTAAA
782 GCAAGACGACTTATTTTCTATTTTT--C-A----T----GA--TT----TTC---------T-AA
10645517 ATTTTTGC
820 A-----GC
* *
10645525 GAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAT
1 --------TTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAA-
*
10645590 AATTCAGCTAAACACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAG--TCCCCATTTC
57 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTTTCCCCATTTC
* *
10645653 A-AACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
121 AGAA-ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
10645717 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC-GACACCCATCGCAC
185 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCACAC
* * * ** * *
10645781 ATCATGTGCGTACACCCCCCTGACCCCCCCGATTACCGGAACCCCAATGCCACCGGTCATGTTCT
249 ATCATGTGTGCACACCCCCC-G-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** * *
10645846 CTAGCGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATATGGCACCAACACATGCCTGAGCCC
312 CCAGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCC
* * *
10645911 AACATGTGCTATCGTAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTT-
377 AGCATGTGC-A--GT---CCAC-ATC----CC--TC----------AAT---C--CGTATGCTTA
* * **
10645975 GACTGTGAATGAACTCTGTATGCCTAAGTCAACCCAC-TGAACGAGCGTTTGGGTGCTCAACCGA
414 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAT-AACGAGCGTGCGGGTGCTCAA-CGA
* * *
10646039 CCAGAGGGGCAGGATGCGCAATCCGGGGATCGATTGAGT---CC-C--C---CT--CGATCC-G-
477 CCAGAGGGGCAGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* *
10646091 ----G-----TC--T--G-----ATGTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA
541 TACCGCACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
** * * * * *
10646138 CGAAACGAACGGGCGGGTGGGCACTACGCCGGCCAAAGAGACAGGATGCGCAAGCCGTAGATCGA
606 CGAAACGAGGGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
10646203 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
671 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
* * * * **
10646268 GTAAATTCATACAATTGTCCTTTATGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCT
736 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTTCT
10646333 ATTTTTCATGATTTT-TGAAA-C
801 ATTTTTCATGATTTTCT-AAAGC
* * * * ** *
10646354 TTTTTG---------TGGT--TCGGGAT--TTTTAAAATTTTT-TT----TG-A-AAGGAGTTTT
1 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTTT---ATTTTTGTTGGCATGCACAA-AAAATTC
* *** * * * ** * *
10646399 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTG-GCA--TGCATAAAAA-ATTCAGCT
62 AGCTAAAAAC-T--CA-AAGTG-TACAAG-A-TTTTG-TGACCATTTG-A-AAAAAGTTTC--C-
** ** * ** * * * * ** * * *
10646460 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTTAGACA-CTT
114 -CCATTTC--A--G-A-AA-CTTTAATGGCTACTGGCAGCAAA------CC--TATA-AAATCTC
* ** ***** * ** * * * * * *
10646523 TAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
162 AAAT-GCT-CT-TTAA-GGGGGTGTGAGTTCTC-GA-GGT-TTGATGAGGG-AT-AG-----G-G
** ** * * * * *
10646588 GTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCA-CCCATCGAACATCATGTGC
212 G---G-CCA-ATATA-AGGGCCAA-GT-A---CC-AGCACC--CATCACA-----CATCATGTGT
* * **
10646652 GCACACCCCCCCTGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTTAGGTTCTCTGGCGAT
258 GCACA-CCCCCC-GG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGAT
* * ** * *
10646717 GCTCCGACGATGGTGCCTCGGTGAAGAAAAATATGGCACCAACACATGCCCGATCCCAGCATGTG
320 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTG
* * ** * *
10646782 CTGCTGCA-A-CCCTCGGTCTGGTCCGAT-CTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCA
385 CAG-TCCACATCCCTCAATC-CGT---ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * * * *
10646844 ACCCATAAAACGAGCGTGTGGGTGCTTAGCTGGCCAGAGGGGCGGGATGCACAAGTCGAGGATCG
445 ACCCACATAACGAGCGTGCGGGTGCTCAAC-GACCAGAGGGGCAGGATGCGCAAGCCGGGGATC-
* * * * * * * * *
10646909 GCCGGGTCCCCCTCTACATGCTGTCGATCCTGTTGCCACAACCCTCAGTCCGGTCCGATCTTAGA
508 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC-ACCCTCAGTCCGATCCAATCTTAGA
* * * * * *
10646974 CTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAATGAGAAGGCAGGCGGTCGGGTATTAC
572 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG--GG--GGCGGGCGGGCACTAC
* * *
10647039 GCCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTCTAGGCACAT
633 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
10647104 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACGATGGTCGCTTAAGA
698 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
10647169 CTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATAATATTTGAAACTTTTTA
763 CTTCACGTGAAGTTTCATGGCAAGACGA--C----T-TA-TTTTC--------T---A-TTTTT-
* * *
10647234 CGGCTCGAGATTTTTTAAAATTTTTTTGGAAGGA
807 C--AT---GATTTTCT---A---------AA-GC
* ** *
10647268 TTTTTGGCCCCAAACTTTATAGACGTGATCCTTTTATTTTTGTTGGCATGCATAAAAAATTTTCA
1 TTTTG-GCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAA--TTCA
* * *
10647333 GCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA-AACAC
63 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGAA-AC
* *
10647397 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCA
127 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* **
10647462 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATGGCACATCA--TG
192 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
* * * * * *
10647525 TCCACACACCCCCGG-CCCCCTATCGTCGGAACCCCAAT-CCGCCTGTTAGGTTCTTC-GACGAT
257 TGCACAC-CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG-CGAT
* ** *
10647587 GCTCTGGCGATGGCGATAGTACCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGAGCCTAG
320 GCTCCGGCGAT-G-G-T-G--CCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAG
* * *
10647652 CATGTGTTATCGTAAACCTCGCTCCGATCTTATCTTAGACTGGGAATGAACTTTGTATGCTTAGA
379 CATGTG----C----A----G-TCC-A-C--ATC----CCT--CAAT---C--CGTATGCTTAGA
* ** * *
10647717 TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGAGTGCTTAACTGACCA
416 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACATAACGAGCGTGCGGGTGCTCAAC-GACCA
* * *
10647782 GAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTCTGCATGCTACCGATCCTGCTAC
480 GAGGGGCAGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* * ** * *
10647847 CGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAATCGACG
544 CGC-ACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * ** *
10647912 AAACAAACGGGCGGGCGAACGGACGGGCACCACGTCGGCCAGAGAGACGGGATGCGCAAGCTATT
608 AAAC-GA--GG-GGGCG---GG-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
10647977 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
665 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* * **
10648042 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGACACGACTCG
730 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTA
*
10648107 TTTTCTATTTTTCACGAGTTTT-TAAA-C
795 TTTTCTATTTTTCATGA-TTTTCTAAAGC
10648134 TTTT
1 TTTT
10648138 TACGGTTTGA
Statistics
Matches: 4068, Mismatches: 651, Indels: 860
0.73 0.12 0.15
Matches are distributed among these distances:
804 9 0.00
805 3 0.00
806 2 0.00
807 1 0.00
808 7 0.00
809 6 0.00
810 13 0.00
811 15 0.00
812 34 0.01
813 17 0.00
815 4 0.00
816 3 0.00
817 1 0.00
818 5 0.00
819 3 0.00
820 1 0.00
821 19 0.00
822 433 0.11
823 565 0.14
824 20 0.00
825 19 0.00
826 46 0.01
827 2 0.00
828 7 0.00
829 73 0.02
830 121 0.03
831 5 0.00
832 3 0.00
833 8 0.00
834 5 0.00
835 9 0.00
836 8 0.00
837 5 0.00
838 92 0.02
839 178 0.04
840 7 0.00
841 14 0.00
842 5 0.00
843 1 0.00
844 4 0.00
845 2 0.00
846 1 0.00
847 6 0.00
848 7 0.00
849 25 0.01
850 8 0.00
851 7 0.00
852 2 0.00
853 1 0.00
855 4 0.00
856 7 0.00
857 53 0.01
858 10 0.00
859 8 0.00
860 8 0.00
861 245 0.06
862 48 0.01
863 353 0.09
864 6 0.00
865 3 0.00
866 9 0.00
867 2 0.00
868 11 0.00
869 8 0.00
870 73 0.02
871 24 0.01
872 13 0.00
873 15 0.00
874 169 0.04
875 114 0.03
876 119 0.03
877 24 0.01
878 34 0.01
879 4 0.00
880 93 0.02
881 10 0.00
882 12 0.00
883 11 0.00
884 13 0.00
885 7 0.00
886 13 0.00
887 3 0.00
888 77 0.02
889 45 0.01
890 29 0.01
891 4 0.00
893 18 0.00
894 14 0.00
895 6 0.00
896 1 0.00
897 1 0.00
898 8 0.00
900 14 0.00
901 16 0.00
902 191 0.05
903 6 0.00
904 12 0.00
905 9 0.00
906 153 0.04
907 2 0.00
908 5 0.00
909 8 0.00
911 2 0.00
912 2 0.00
914 5 0.00
915 1 0.00
916 10 0.00
917 6 0.00
921 1 0.00
923 3 0.00
924 2 0.00
925 9 0.00
926 19 0.00
927 4 0.00
928 9 0.00
929 3 0.00
930 2 0.00
931 2 0.00
932 3 0.00
933 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (822 bp):
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAATTCAGCT
AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGAAACTTTA
ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCA
CACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCG
GCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCAGTCC
ACATCCCTCAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACATAAC
GAGCGTGCGGGTGCTCAACGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCT
CTGCGTGCTGCCGATCCTGCTACCGCACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACGAGGGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
GGCAAGACGACTTATTTTCTATTTTTCATGATTTTCTAAAGC
Found at i:10644210 original size:26 final size:26
Alignment explanation
Indices: 10644181--10644233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10644171 CCGGTCCGAT
*
10644181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10644207 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
10644233 C
1 C
10644234 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10647735 original size:26 final size:26
Alignment explanation
Indices: 10647685--10647737 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10647675 CCGATCTTAT
**
10647685 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10647711 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10647737 C
1 C
10647738 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10649476 original size:26 final size:26
Alignment explanation
Indices: 10649440--10649492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10649430 CCGGTCTAAT
10649440 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
10649466 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10649492 C
1 C
10649493 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10650382 original size:27 final size:27
Alignment explanation
Indices: 10650325--10650404 Score: 137
Period size: 27 Copynumber: 3.0 Consensus size: 27
10650315 CCGGTCCAAT
*
10650325 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCTCGTATG
10650351 CTTAGACTGGGAATGAACTCTCGTATG
1 CTTAGACTGGGAATGAACTCTCGTATG
10650378 CTTAGACTGGGAATGAACTC-CGTATG
1 CTTAGACTGGGAATGAACTCTCGTATG
10650404 C
1 C
10650405 ATAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
26 25 0.48
27 27 0.52
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCTCGTATG
Found at i:10652156 original size:26 final size:26
Alignment explanation
Indices: 10652120--10652172 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10652110 CTAGTCTGAT
10652120 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10652146 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10652172 C
1 C
10652173 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10653749 original size:893 final size:894
Alignment explanation
Indices: 10646809--10654820 Score: 9450
Period size: 894 Copynumber: 9.0 Consensus size: 894
10646799 CTGGTCCGAT
* ** * * *
10646809 CTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCATAAAACGAGCGTGTGGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * ** * * *
10646874 TGGCCAGAGGGGCGGGATGCACAAGTCGAGGATCGGCCGGGTCCCCCTCTACATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGCATGCTGCCAATCC
* * * *
10646939 TGTTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATG-A-TCCGTATGCCTAAGCCAA
* * * * * * *
10647004 CCGATGAAATGAGAAGGCAGGCGGTCGGGTATTACGCCGGCCAGAGAGACGGAATGCGCAAGCCG
194 CCGACGAAACGAG-A--CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
10647069 TGGATCGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
256 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* * * *
10647134 TATGGCTTGTAAATTCATACGATGGTCGCTTAAGACTTCACGTGAAGTTTAATGGCAAGACGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * * * *
10647199 CGTTTTCTATTTTTCATAATATTT-GAAACTTTTTACGGCTCGAGATTTTTTAAAATTTTTTTGG
386 CATTTTCTATTTTTCACGAT-TTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGG
* ** * * *
10647263 AAGGATTTTTGGCCCCAAACTTTATAGACGTGATCCTTTTATTTTTGTTGGCATGCATAAAAAAT
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-
* * *
10647328 TTTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
514 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
10647393 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
10647458 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATGGCACATCA
644 CTCAAGGTTTGATGAGGGATAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * * *
10647523 TGT-C-CACACACCCCCG-GCCCCCTATCGTCGGAACCCCAAT-CCGCCTGTTAGGTTCTTCGAC
709 TGTGCGCACACCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT
* **
10647584 GATGCTCTGGCGATGGCGATAGTACCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGAGCC
774 GATGCTCTGGCGA---CG---GTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCC
* * ** * * ** **
10647649 TAGCATGTGTTATCGTAAACCTCGCTCC-GATCTTATCTTAGACTGGGAATGAACTTTGTATG
833 CAGCATGTGCTGCCGTAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
10647711 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGAGTGCTTAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * *** * * *
10647776 TGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTCTGCATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGCATGCTGCCAATCC
* * * * *
10647841 TGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATG-A-TCCGTATGCCTAAGCCAA
* * * * *
10647906 TCGACGAAACAAACGGGCGGGCGAACGGACGGGCACCACGTCGGCCAGAGAGACGGGATGCGCAA
194 CCGACGAAAC-GA--GACGGGCG---GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
** * *
10647971 GCTATTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* *
10648036 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGACAC
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
10648101 GACTCGTTTTCTATTTTTCACGAGTTTT-TAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTT
382 GACTCATTTTCTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTT
* *
10648165 TCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTATGTTGGCATGCACAAA
446 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
10648230 AAATTTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTT
511 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
10648295 CAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCGTTAAGGGGGTGTGA
576 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
10648360 GTTTTCCAGGTTTGATGAGGGATAAAGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCACAG
641 GTTCTCAAGGTTTGATGAGGGAT-AAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
10648424 ATCATGTGTGCACA-CCCCCCGGCCCCACCGATCGCCGGAACCCCAATACCACCGGTCAAGTTCT
705 ATCATGTGCGCACACCCCCCCGACCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
** * * ** * * *
10648488 CCGGCGATGTTCCGGCGACGGTGCCCCGGTGAAGAAAAATACGGCACGAACACATGTCGGAGCCC
769 CCGATGATGCTCTGGCGACGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCC
* *
10648553 AGCATCGTGGCTGTCCGTCACCC-C--T-C-G---G-TC----CCT--G---G---TCC----G
834 AGCAT-GT-GCTG-CCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
10648592 CTTAGACTGGGAAATGAACTCCGTATGCCTAAAGTCAACCC-TGAAACGAGCGT-CGGGTGCTCA
1 CTTAGACTGGG-AATGAACTCCGTATGCCT-AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * ** *
10648655 GCCGACCAGAGGGGCAGGATGCGCAAGCCGGAGATCGGCC-GGTGCCCCCTCTGCGTGCTGTCC-
64 ACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGT-CCCCCTCTGCATGCTG-CCA
* * * *
10648718 ATCCTGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAG
127 ATCCTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATG-A-TCCGTATGCCTAAG
** * * *
10648783 CCAACTAACGAAACGATCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAA
190 CCAACCGACGAAACGA---GACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
10648848 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTATGTGCCAATGCCA
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
10648913 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** ** * * *
10648978 GACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCG-GTATTTTTTAAAA-TTTT
382 GACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAG-ATTTTTTAAAATTTTT
* ** * *
10649041 TCAGCAAGGAGTTTTGGCCCCAAACTTTTTAGACATAATCCTTGTATTTTTGTTGGCATGCATAA
446 TC-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* *
10649106 AAAAATTCAGCTAAAAACTTGAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
510 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* **
10649171 TAAGACACTTTAATGGCTACTTCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
575 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
10649236 AGTTCTCAAGGTTTGATCAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
640 AGTTCTCAAGGTTTGATGAGGGATAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
10649301 ATCATGTGCGCACACCCCCCCGGCACCTCTGATCGTCGGAA-CCCAAT---GCC-G-C---TTAT
705 ATCATGTGCGCACACCCCCCCGAC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
10649357 -C-A-G--G---T--C--C--T---CCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCC
769 CCGATGATGCTCTGGCGACGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCC
* * ** *
10649405 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCATATG
834 AGCATGTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
10649466 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAGATGAACGTGTGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA-ACGAGCGTGCGGGTGCTCAA
* * *** * * * *
10649530 CCGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGGTCGTGTCCCCCTCTACGTGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGCATGCTGCCAATC
* * * * * *
10649595 TTGCTGTCGCAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGGACTCTGTATGCCTAGGCCA
130 CTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAAT-GA-TCCGTATGCCTAAGCCA
* * * * * *
10649660 ACTGACGAAACGAG-CGGGCAGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCCCAAGTCGTG
193 ACCGACGAAACGAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * * * **
10649724 GATCGATTGGGTGGTAGGCGGGTTTAGGGACATCTTAATATTTTTGTGTGCCAATGCCATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* *
10649789 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
* **
10649854 TTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAG
388 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAG
* * * *
10649919 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCATAAAAGAATT
453 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATT
** *
10649984 CAGCTAAAAACTCGAAGTGTACATA-ATTTTGTGACCATTTGAAAAAAGTGTCTGCATTTTAGAC
517 CAGCTAAAAACTCGAAGTGTACA-AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
10650048 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
10650113 CGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATG
646 CAAGGTTTGATGAGGGATAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
10650178 TGCGCACA-CCCCTCGACCCCCCCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCCACG
711 TGCGCACACCCCCCCGA-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATG
** * *
10650242 A---T-T-------GTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGGGCCCACCATG
775 ATGCTCTGGCGACGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATG
*
10650296 TGCTGCCATAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGG
840 TGCTGCCGTAA-CC-C--T-CGG-----TC-----C-A-G--T---C--CG-AT-CTTAGACTGG
10650361 GAATGAACTCTCGTATG
879 GAATGAACTC-CGTATG
* * * *
10650378 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * **** *
10650443 CGACCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTGCAAGCTGTCC-ATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGCATGCTG-CCAATC
* * * * * **
10650507 TTGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATG-A-TCCGTATGCCTAAGCCA
* * * * ** * * * *
10650572 ACTGACGAAACGATCGGCCGAGCTGGCGGGCACTACATCGGCCAGAGAGACAGGATACGAAAGCT
193 ACCGACGAAACGA---GACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
10650637 GTGGATCGAGAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTATGTGCCAATGCCATTT
255 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* *
10650702 TTATGGCTTGTAAATTCATATAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
320 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** * *
10650767 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCCG
385 TCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGG
* * * *
10650832 AAGGAGTTTTAGCCCCGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAA
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
10650897 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGA
515 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
10650962 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * *
10651026 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCACACATCAT
645 TCAAGGTTTGATGAGGGATAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * * * **
10651091 GTGCGCCCACCCCTCCGGCCCCTCAGATCACCGGAACCCCAACGCCGCCGATCATGTTCTCCGGC
710 GTGCGCACACCCCCCCGACCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT
* ** * * *
10651156 GATGCTCCGGCGACAATGCCCCGACGAAAAAAAATGCGGCACCAACACATGCCCAAGCCCAGCAT
774 GATGCTCTGGCGACGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCAT
* *
10651221 GTGCTGCTGCAACCCTCGGTCC-G---G-TC-----C-------G-A-----T-T-
839 GTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** *
10651252 -TTAGATTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAATGTGCGGGTGCTTAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
*
10651316 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGCCCCCCTCTGCATGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGCATGCTGCCAATCC
* * *
10651381 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACCGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATG-A-TCCGTATGCCTAAGCCAA
* * * * *
10651446 CCGACGAAATGAG-CGGGCGGGCGGGTACTACACCAGCCAGAGAGACGGGATGCACAAGCCGTGG
194 CCGACGAAACGAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
10651510 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
**
10651575 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* ** * *
10651640 TTTCTAGTTTTCATAATTTTCAAAACTTTTTGCGG-TTCAGGATTTTTTAAAATTTTTTCGGAAG
389 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGA-GATTTTTTAAAATTTTTTCGGAAG
* * * * *
10651704 AAGTTTTGGCCCCAAACTTGATAGGCAGGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTC
453 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
10651769 AGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGAGTCCCCATTTCAGACAT
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
10651834 TTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAATTCTCG
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-
* *
10651899 AA-GTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTT
647 AAGGTTTGATGAGGGATAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
10651963 GCGCACACCCCCCCGACCCCCCGATCGTCGAAACCCCAATACCGTCGGTCAGGTTCTCCGATGAT
712 GCGCACACCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGAT
* * * * * *
10652028 GCTCCGGTGATGGTGCCCCGACGAAGAAAAATATGGCACCAACACATGCCCAAGCCTAGCATGTG
777 GCTCTGGCGACGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTG
* * * *
10652093 CTGCTGTAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCATATG
842 CTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
10652146 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGGGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
** * * * *
10652211 CGGCCAGAGGGAAGGGATGCGCAAGCCGGGGATCAACCGGGT-CCCCTCTCCGTGTTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGCATGCTGCCAATCC
** ** * *
10652275 TATTGCCGCAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTC-TACATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGATC-CGT--ATGCCTAAGCCA
* *
10652339 ACCGATGAAACGA-ACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTG
193 ACCGACGAAACGAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* **
10652403 GATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* *
10652468 TGGAC-TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGATGACTC
323 TGG-CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** * * * *
10652532 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAA
387 ATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAA
*
10652597 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
452 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
10652662 CAGCTAAAAAATC-ATAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
517 CAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
10652726 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
** * *
10652791 TGAGGTTTGATTAGGGATAGAGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCAT
646 CAAGGTTTGATGAGGGATA-AGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
10652855 GTGCGCACACCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATG
710 GTGCGCACACCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATG
* *
10652920 ATGCTCTGGCGACGGTTCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGGATG
775 ATGCTCTGGCGACGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATG
* * *
10652985 TGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATG
840 TGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * * *
10653040 CTTAGACGGGGAATGAACTTCGTTTGCCTAAGTCAACCCATAAAACGAGCGTGTGGGTGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * *
10653105 CGGCTAGAGGGGCGGGATGCGTAAGTCGGGGATCGACCAGGTCCCCCTCTGCATGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGCATGCTGCCAATCC
* * * * * *
10653170 TGCTACCGTAACCTTCAATCCGGTCCGATCTTAGACTGGGAATG-TCCGTATGCCTAAGCCAACT
131 TGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGATCCGTATGCCTAAGCCAACC
* * *
10653234 GACGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGTGGGATGGGATGCGCAAGCCGTG
196 GACGAAACGA---GACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
10653299 GATCGATAGGGTTGCT-GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
258 GATCGATAGGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
10653363 ATGGCTTGTAAATT-ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
322 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
10653427 ATTTTTTATTTTTCACGATTTTCGAAAC-CTTTGCGGTTTGAGATTTTTT-AAATTTTTT-TGAA
387 ATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAA
* * * *
10653489 GGGAGTTTTGGCCCCAAACTTTGTAGACCTGATCCTTGTATTTTTTTTAGCATGCACAAAAAAAT
452 -GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
10653554 TCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTCAGAC
516 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
10653619 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
10653684 CAAGGTTTGATGAGGGATAAGGGACCAACATAAGGGCCAAGTCCCAGCACCCATCACACATCATG
646 CAAGGTTTGATGAGGGATAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * **
10653749 TGCGCACACCCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGTCGCTGATCAGGTTCTCCGGC
711 TGCGCACA-CCCCCCC-GACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT
* * *
10653814 GATGCTC-GGACGATGGTGCCCC-AGTGAAGAAAAATACTGCACCAACACATGCCCGAGCCCAGC
774 GATGCTCTGG-CGACGGTGCCCCGA-CGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGC
* * * * * * *
10653877 ATATGATGTCGTAACCCTCGGT-CTGATCTGATCTTAGACTAGGAATGAACTTCGTATG
837 ATGTGCTGCCGTAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATG
** * *
10653935 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCACAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * ** * * * ** *
10654000 CGGCCAGAAGGGCGGAATGCATAAGCCGGGGATCGATCGGGTCCCCCTATGCATGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGCATGCTGCCAATCC
* ** *
10654065 TGCTGCCCCAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATG-A-TCCGTATGCCTAAGCCAA
* * * * *
10654130 CCGACGAAATGAGCGGGCGGGCGGGCGGGCACTATGTCGGCCAGAGAGATGGGATGCGCAAGCCG
194 CCGACGAAACGA---GACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * **
10654195 TGGATCGATAGGATGGTAGGTGGGCTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTT
256 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* * *
10654260 TATGGCTTGTAAATTGATATAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
10654325 CATTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGA
386 CATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGA
* * *
10654390 AGGAGTTTTGGCCCCAAACTTGGTAGACTTGA-CCTTGTATTTTTTTTGGCATGCACAAAAAACT
451 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
10654454 TCAGCTAATAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGAC
516 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
10654519 ACTTTAATGTCAACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
10654584 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATG
646 CAAGGTTTGATGAGGGATAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
10654649 TGCACACACCCCCCCGACCCCCCTGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGGTG
711 TGCGCACACCCCCCCGACCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATG
* *
10654714 ATG--CT--------T----CGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATG
775 ATGCTCTGGCGACGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATG
* **
10654765 TGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
840 TGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
10654820 C
1 C
10654821 CTAAGCCAAC
Statistics
Matches: 6208, Mismatches: 705, Indels: 411
0.85 0.10 0.06
Matches are distributed among these distances:
849 7 0.00
850 5 0.00
851 2 0.00
852 41 0.01
853 1 0.00
854 1 0.00
855 1 0.00
857 1 0.00
858 2 0.00
859 1 0.00
862 2 0.00
864 2 0.00
866 1 0.00
867 1 0.00
868 3 0.00
869 488 0.08
870 361 0.06
871 228 0.04
872 16 0.00
873 209 0.03
874 146 0.02
875 5 0.00
876 17 0.00
877 452 0.07
878 22 0.00
879 6 0.00
880 5 0.00
881 149 0.02
882 33 0.01
883 12 0.00
885 139 0.02
886 5 0.00
887 2 0.00
888 1 0.00
889 2 0.00
890 4 0.00
891 1 0.00
892 32 0.01
893 261 0.04
894 814 0.13
895 511 0.08
896 116 0.02
897 9 0.00
898 153 0.02
899 118 0.02
900 236 0.04
901 38 0.01
902 186 0.03
903 47 0.01
904 3 0.00
905 184 0.03
906 283 0.05
907 9 0.00
908 19 0.00
909 26 0.00
910 2 0.00
911 22 0.00
912 182 0.03
913 4 0.00
914 89 0.01
915 172 0.03
916 259 0.04
918 1 0.00
921 3 0.00
922 1 0.00
924 1 0.00
925 2 0.00
926 51 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGCATGCTGCCAATCC
TGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGATCCGTATGCCTAAGCCAACC
GACGAAACGAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
TCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
TTTGATGAGGGATAAGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTC
TGGCGACGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGC
CGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:10653960 original size:26 final size:26
Alignment explanation
Indices: 10653909--10653961 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10653899 CTGATCTGAT
*
10653909 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCATATG
*
10653935 CTTAGACTGGGAATGAAC-TCTATATG
1 CTTAGACTAGGAATGAACTTC-ATATG
10653961 C
1 C
10653962 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCATATG
Done.