Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 64 of 190
Found at i:10655477 original size:695 final size:699
Alignment explanation
Indices: 10654065--10655507 Score: 2249
Period size: 695 Copynumber: 2.1 Consensus size: 699
10654055 CTATCGATCC
* * * * *
10654065 TGCTGCCCCAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAA
* * * ** *
10654130 CCGACGAAATGAGCGGGCGGGCGGGCGGGCACTATGTCGGCCAGAGAGATGGGATGCGCAAGCCG
66 CCGACGAAA-GAGCGAGCGGGCGGGCGGGCACTACGCCGGAAAGAGAGACGGGATGCGCAAGCCG
* * **
10654195 TGGATCGATAGGATGGTAGGTGGGCTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTT
130 TGGATCGATAGGATGGTAGATGGGCTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
10654260 TATGGCTTGTAAATTGATATAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACT
195 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCAAGGCAAGACGACT
* *
10654325 CATTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGA
260 CATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGAGTTTTTAAAATTTTTTCGGA
* * * *
10654390 AGGAGTTTTGGCCCCAAACTTGGTAGACTTGACCTTGTATTTTTTTTGGCATGCACAAAAAACTT
325 AAGAGTTTTGGCCCCAAACTTGGTAGACGTGACCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
10654455 CAGCTAATAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACA
390 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACA
*
10654520 CTTTAATGTCAACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTC
455 CTTTAATATCAACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTC
*
10654585 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGT
520 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCACACATCATGT
* * * *
10654650 GCACACACCCCCCCGACCCCCCTGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGGTGA
585 GCACACACCCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGA
*
10654715 TGCTTCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATG
650 TGCTTCGACGAAGAAAAATGCAGCACCAACACATGCCCGACCCCAGCATG
* * * *
10654765 TGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAA
* *
10654830 CCGAC-AAA-A-CGATCGGGCGGGCGGGCACTACGCCGGAAAGAGAGACGGGATGCGCAAGTCGT
66 CCGACGAAAGAGCGAGCGGGCGGGCGGGCACTACGCCGGAAAGAGAGACGGGATGCGCAAGCCGT
* *
10654892 GGATCGATAGCG-TGGTAGATTGGTTTCA-GCACATCTTCATATTTCTGCATGCCAATGCCATTT
131 GGATCGATAG-GATGGTAGATGGGCTT-AGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
10654955 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGAC
194 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCAAGGCAAGACGAC
* * * *
10655020 TCGTTTTCTATTTTTCACTATTTTTGAAAA-TTTTTGCGG-TTGGGAGTTTTTAAAATTTTTTCG
259 TCATTTTCTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTTGGGAGTTTTTAAAATTTTTTCG
10655083 GAAAGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
323 GAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGA-CCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
10655147 ATTGAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAA-AAGTGTCCCCATTTCA
387 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAGAAGTGTCCCCATTTCA
* * *
10655211 GACACTTTAATATCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
451 GACACTTTAATATCAACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGT
*
10655276 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
516 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCACACATC
* *
10655341 ATGTGCACACACCCCCCCGACCCCCCCGATCATCGGAACCCCAATGTCGTCGGTCAGGTTC-TCT
581 ATGTGCACACACCCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTTC-
*
10655405 GGCGATGCTTCGACGAAGAAAAATGCGGCACCAACACATGCCCGACCCCAGCATG
645 GGCGATGCTTCGACGAAGAAAAATGCAGCACCAACACATGCCCGACCCCAGCATG
* *
10655460 TGCTGCCGCAACCCTCGGTCTAGTCTGATATTAGACTGGGAATGAACT
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
10655508 ATGTATGGTT
Statistics
Matches: 678, Mismatches: 59, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
694 21 0.03
695 396 0.58
696 186 0.27
697 11 0.02
699 3 0.00
700 61 0.09
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (699 bp):
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAA
CCGACGAAAGAGCGAGCGGGCGGGCGGGCACTACGCCGGAAAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGATGGTAGATGGGCTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCAAGGCAAGACGACTC
ATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGAGTTTTTAAAATTTTTTCGGAA
AGAGTTTTGGCCCCAAACTTGGTAGACGTGACCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACAC
TTTAATATCAACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCACACATCATGTG
CACACACCCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGAT
GCTTCGACGAAGAAAAATGCAGCACCAACACATGCCCGACCCCAGCATG
Found at i:10656484 original size:14 final size:14
Alignment explanation
Indices: 10656465--10656498 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
10656455 GCCAGAGGGG
10656465 CGGGATGCGCAAGC
1 CGGGATGCGCAAGC
10656479 CGGGATGCGCAAGC
1 CGGGATGCGCAAGC
10656493 CGGGAT
1 CGGGAT
10656499 CGGTCGGGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.44, T:0.09
Consensus pattern (14 bp):
CGGGATGCGCAAGC
Found at i:10657274 original size:26 final size:26
Alignment explanation
Indices: 10657245--10657300 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
10657235 CCGATCCGAT
*
10657245 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
10657271 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
10657297 CTTA
1 CTTA
10657301 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10659021 original size:26 final size:27
Alignment explanation
Indices: 10658992--10659044 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
10658982 GGTCCGATCA
10658992 TAGACTGGGAATGAACTCCGTA-GCCT
1 TAGACTGGGAATGAACTCCGTATGCCT
*
10659018 TAGACTGGGAATGAACTTCGTATGCCT
1 TAGACTGGGAATGAACTCCGTATGCCT
10659045 AAGTCAACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (27 bp):
TAGACTGGGAATGAACTCCGTATGCCT
Found at i:10660784 original size:26 final size:26
Alignment explanation
Indices: 10660755--10660807 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10660745 CCGGTCCGAT
*
10660755 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10660781 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
10660807 C
1 C
10660808 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10661684 original size:26 final size:26
Alignment explanation
Indices: 10661655--10661705 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
10661645 TGTCCGATCA
10661655 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
10661681 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
10661706 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:10662577 original size:26 final size:26
Alignment explanation
Indices: 10662540--10662592 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10662530 CCAATCCGAT
* *
10662540 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
10662566 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
10662592 C
1 C
10662593 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:10663481 original size:26 final size:26
Alignment explanation
Indices: 10663443--10663495 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10663433 CCGATCCGAT
10663443 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
*
10663469 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
10663495 C
1 C
10663496 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:10664007 original size:899 final size:897
Alignment explanation
Indices: 10658119--10670286 Score: 14604
Period size: 898 Copynumber: 13.7 Consensus size: 897
10658109 CCGATCCAAT
*
10658119 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
10658184 CAGCCA-AGGGGCGGGATGCGCAAGCTGGGGATTGGTCGGGTCCCCCTCTGCGTGCCGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * ** *
10658248 TGTTGCAGCAACCCTC-GATCTGATCCAATCTAAGACTAAGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAG-TCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
* * * * * * ** * *
10658312 A-TGATGAAACGAGTGGGTGGGCAGAAGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGGG-CGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
10658376 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* *
10658441 TTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * ** **
10658506 TCATTTTTTATTTGTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCTT
389 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGG
** * * * *
10658571 AAGGAGTTTTCACCCCAAACTTCGAAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAA
10658636 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * * *
10658701 ACACTTTAATGGCTACTGGTAGTAAACCTGTAAAATCTCAAACGCTCATTAA-GGGGTGTGAGAT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
10658765 CTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATTGCACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
10658830 TGTGCGCACACCCCTCGGCTCCCCCGATCGCCAGAACCCCAATGCCGCTGGTCAGGTTCTCCGGT
712 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * * *
10658895 GATGCTCCGGTGATGGTGCCCCGATTAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCAT
777 GATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * *
10658960 GTGCTACCGTAATCCTCGGTCTGGTCCGATCATAGACTGGGAATGAACTCCGTA-G
842 GTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
*
10659015 CCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
10659080 CCGGCCAGAGGGGCGGGATGTGCAAGACGGGGATCAATCGGGT--CTCTACTTCATGCTGCCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCT-CTGCGTGCTGCCGAT
* * * * * * **
10659143 CTTGCTGTCGCAACCCTC-GATTTGG-TCTAATCTTCGACTGGGAATGAACTCCGTATATCTAAG
129 CCTGCTGCCGCAACCCTCAG-TCTGGTTC-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
* * * **
10659206 CCAACCGACGAAATGAGGGGGCGAGCGGGAAGGCGGGCGGGCACTACGTCTACCAGAGAGACGGG
192 CCAACCGACG-AA--A-----CGAGCGGG-CGACGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* *
10659271 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATTTTTTTGCGTGC
248 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC
* **
10659336 AAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTTTTAAGCCTTCACGTGAAGTTTCAT
313 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
** *
10659401 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTGTTT-
378 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG-GATTT-TTTA
* * * * * *
10659465 AAATTTTTTCAGTAGGAGTTTTGGCCCCAAACCTGGTAAACATGATCCTTGTATTTTTCTTGGCA
441 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* *
10659530 TGCACAAAAAAATTCAGCTAGAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
506 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
10659595 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC--T---A--TAAAAT-CTC---AAGG
571 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
10659649 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCC
636 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* ** **
10659714 ATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GAACGTCAATGCCGTTGGTCA
701 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
** *** * * * **
10659778 GGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACAAAGACAAATACAGCACCAGCACATGCTG
766 GGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCC
*
10659843 GAGCCCAGCATGTGCTGCCGGAACCCTCGGTCCGA----A-C-----C---------A------A
831 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
10659883 T-
896 TG
*
10659884 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
10659949 CGGCTAAAGGGGCGGGATGCGTAAGTCGGGGATCGATCAGGTCCCCCTTTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * **
10660014 CGCTGCTACAACCATCAGT-TCGG-TCTGATCTTAGACTGGGAATGAAC-TCAGTATGCCCGAGC
131 TGCTGCCGCAACCCTCAGTCT-GGTTC-GATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGC
* * * * * *
10660076 CAACCAACGAAACGAGC-GG-G-CGGGCGGGCACTATGCTGGCCAGAGAAACAGCATGCGCAAGC
193 CAACCGACGAAACGAGCGGGCGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
10660138 CGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCAAATCTTCATATTTCTACATGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* *
10660203 TTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** * *
10660268 CTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCT
388 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCG
* ** * * * *
10660333 TAAGGAGTTTTCACCCCAAACTTCGAAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
10660398 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAATAAATTATCCCCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
10660463 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAAGGTGTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
10660528 CTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAATTACCAGCACCCATCGCACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
10660593 TGTGCGCACACCCCGCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCG
712 TGTGCGCACA-CCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *** *
10660658 GCGATGCTCCGACGATAGTGCCCCGGTGAAGAAAAATATAGCACCAACACATGCCCGAGCCCAGC
775 GCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
10660723 ATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
840 ATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
10660781 CTTAGACTGGGAATGAACTCCATATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
10660846 CGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCTTCTGCATGTTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
10660911 TGCTACCACAACCCTCTGTCTGGTCCTATCTTAGACTGGGAATCAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * * * * *
10660976 CCGACGAAACGAGCGGGCGGGCTGGCAGGCGAGACTATGCTGGCCAGATAGACGGGATGCGCAAG
196 CCGACGAAACGAGCGGGC-GACGGGC-GG-G-CACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
10661041 CCTTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * *
10661106 TTTTATGGCTTGTAAATCCATATAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * *
10661171 ACTCGTTTTCTATTTTTCATTATTTTCGAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTC
387 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTC
* * * * *
10661236 GAAAGTACTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-TATTTTTGTTAGCATGCACAAAAC
451 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
10661300 AATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
10661365 GACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** *
10661429 TCTCGAGGTTTGATGAGGGATA-GGGAACAATATAAGGGCCAAGTAACAGCACCCATCGCACATC
646 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
10661493 ATGTGCGCAAACCCCCTGGCCCCCCCGATCGTCGGAA-CCCAATGCCGCCGATCAGGTTTTCCGA
711 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
** * * ** * * * *
10661557 CGATGCTCCGATGATGGTGCCTCAGCAAAGAAAAATGCGGCACCAACACAAGCCCAAGCGCAGCA
776 CGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
10661622 TGTGCTGCCGCAACCCTCGGTCCTG-TCCGATCATAGACTGGGAATGAACTCCGTATG
841 TGTGCTGCCGCAACCCTCGGTCC-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
10661679 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGCGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
10661744 CAGCCAGAGGGGCGAGATGCGAAAGCCGAGGATCGGTCGGGCCCCCCTCTGCGTG-TCGCAGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCT-GCCGATC
* * * *
10661808 CTGCTGCCCCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
* * *
10661873 ACCGACGGAACGAGC-GG-G-CGGGCGGGCACTAC-CTCGACTAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGGGCGACGGGCGGGCACTACGC-CGGCCAGAGAGACGGGATGCGCAAGCC
* * ** * *
10661934 GTAGATCGATAGGGTGGTAGGTGGGTTTAGGTATGTCTTCATATTTCTACGTGCCAATGCAATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
10661999 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
10662064 TCGTTTTTTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTT-G
389 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GGATTTTTT-AAAATTTTTTCG
* ** * * * *
10662128 GATGTTGGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCCTACACAAAAAC
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-
* *
10662193 AATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
10662258 GACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
10662323 TCTCGAGGTTTTATGAGAGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATTGCACATC
646 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * ** * * *
10662388 ACGTGGGCACATCCCCCCTGGCGCCCTCGATCGTCGAAACCCCAATTTCGTCGATCAGATTCT-C
711 ATGTGCGCACA-CCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** **
10662452 --CGA--------CGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGAACAG
774 GGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
10662507 CATGTGTTGCCGTAACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCTGTATG
839 CATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
10662566 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * *
10662631 CGGCTAGAGGGGCAAGATGCGAAAGTCGAGGATCGGTCAGGTCCCTCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
10662696 TGCTACCGTAACCCTCAAT-TCAG-TCTGATCTTAGA-TCGGGAATGAACTCCGTATGCCTAAGC
131 TGCTGCCGCAACCCTCAGTCT-GGTTC-GATCTTAGACT-GGGAATGAACTTCGTATGCCTAAGC
* * * * * *
10662758 CAACCGACAAAACAAGCAAGCTGGCGGGCGGGCGAGCACCACGCAGGCCAGAGAGACGGGATGCG
193 CAACCGACGAAAC--G--AGCGGGC-GACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
10662823 CAAGCTGTGGATCGATAGGGTGGTAGGCT-GGTTTAGGCACATCTTCACATTTCTGCATGCCAAT
253 CAAGCCGTGGATCGATAGGGTGGTAGG-TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
* *
10662887 GCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCA
317 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
10662952 AGATGACTCGTTTCCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGAATTTTTTAAAATT
382 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GGATTTTTTAAAATT
* * * *
10663017 TTTTCGGAAAGAGTTTTGGCACCAAAC-CGAGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
446 TTTTCGGAAGGAGTTTTGGCCCCAAACTTG-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
10663081 CAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
510 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
10663146 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGT
575 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
10663211 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATCTAAGGGCCAAGTACCACCACCCATTG
640 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
10663276 CACATCATGTGCGCACACCCCCTGGCCCCCCCGATTGTCGGAACCCCGATGCCGCCGGTCAGGTT
705 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
** * * *
10663341 CTCCGGCGATGC-CCTGGCGATGGTGCATCGGTAAAGAAAAATGTGGCACCAGCACATGCTCGAG
770 CTCCGGCGATGCTCC-GGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
10663405 CCCAGCATGTGCTACCGTAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTTCGTATG
834 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
10663469 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
10663534 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCCGCTGATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
10663599 TGTTGCCGTAACTCTCAGTTTGGTTCGATCCTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * * *
10663664 CCGACGAAATGAGCGGGCGAACGGGCGGCCACTACGCCAGCCAGAGAGACGGGATGCACAAGCCG
196 CCGACGAAACGAGCGGGCG-ACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
10663729 TGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATCCCAATGTCAGTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
10663794 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * **
10663859 CATTTTCTATTTTTTACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGA
390 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGA
* * * *
10663924 AGGATTTTTGGCCCCAAACTTGGTAGACGTAGATCCTTGTATTTTTTTTGGCACGTA-AAAAAAA
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGT-GATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
10663988 TTTAGCAAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
10664053 CACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
10664118 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** *
10664183 GTGTGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCAAATGCCGCCGGTCAGGTTCT-C--C
713 GTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * *
10664245 -A-------GCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCAAATGCCTGAGCCCAGCAT
777 GATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
*
10664302 GTGCTGTCGCAA-CC-C--T-CG----G---TT---C--GG--T----T-CG-AT-
842 GTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
10664332 CTTAGACTGGGAATGAACTCC-TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
10664396 ATGCCAGAGGGGCGGGATGCGCAAGCCGGGATGCGCAAGCCGGGATCGGTCGGGTCCCCTTCCGC
66 CGGCCAGAGGGGCGGGATGCGCAAG-C------CG--A----GGATCGATCGGGTCCCCCTCTGC
* * * * * *
10664461 GTGCTACTGATCCTGGTGCCTCAACCCTCAGTCTGG-TCTAATCTTAGACTGGGAATAAAC-TCT
118 GTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTTC-GATCTTAGACTGGGAATGAACTTC-
* * * *
10664524 GTATGCCTAAGCCAACCGATGAAACGAAC-GG-G-CGGGCGGGCGCTACGCTGGCCAGAGAGACG
181 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGACGGGCGGGCACTACGCCGGCCAGAGAGACG
**
10664586 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAAT
246 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
*
10664651 TCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
311 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* *
10664716 ATGGCAAGACGACTCGTTTTCTATTTCTCACGATTTTCAAAACTTTTTTCGGTTCGAGATTTTTT
376 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG-GA-TTTTT
* *
10664781 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
439 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
10664846 CATGCATAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
504 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* **
10664911 GTCCCCATTTCAGACACATTAATGGCTACTACCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
569 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
10664976 -GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCAC
634 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
10665040 CCATCACACATCATGTGCACACACCCCCCGACCCCCCCGATCG-CTGGAACCTCAATGCCGCCGG
699 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGG
* * * *
10665104 TTAGG---T-------T-CT-C--CGA--------C---GAAGAAAAATGTGGCAGCAACACATG
763 TCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATG
* * * * *
10665144 CCCGAGCCCAGCATGTGTTACCACAACCCTCGGTCCGATCCGATCTTAGATTGGGAATAAACTCC
828 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCC
10665209 GTATG
893 GTATG
* *
10665214 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
10665279 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCCGCTGATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
10665344 TGTTGCTGTAACTCTCAGTTTGGTTCAATCCTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * * * *
10665409 CCGACGAAATGAGCGGGCGAACGGGCGGCCACTACACCAGCCAGAGAGACGGGATGCACAAGCCG
196 CCGACGAAACGAGCGGGCG-ACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * * * * *
10665474 TGAATCGATAGGGTGGTAGGTGAGTTTAGGTACATCTTCATATTTCTACATCCCAATGTCAGTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
10665539 TATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAATTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
10665604 CATTTTCTATTTTTCACGATTTTTC-AAACTTTTTACCGCTCGAGATTTTTTAAAA-TTTTTCGG
390 CGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGG
10665667 AAAGTGAGTTTTGGCCCCAAACTT-GTAGACCGCTGATCCTTGTATTTTTGTTGGCATGCACAAA
453 -AAG-GAGTTTTGGCCCCAAACTTGGTAGA-CG-TGATCCTTGTATTTTTGTTGGCATGCACAAA
10665731 AAAATTCAGTGCTAAAAACTCGAAG-GTACAAGATTTTGTGAACCATTTGAAAAAAGT-TCCCCA
514 AAAATTCA--GCTAAAAACTCGAAGTGTACAAGATTTTGTG-ACCATTTGAAAAAAGTGTCCCCA
*
10665794 TTTCAGACACTTTAATGGCTACTGGCAGCAAACACTAT-AAATCTCAAATGCTCTTTAAAAGGGG
576 TTTCAGACACTTTAATGGCTACTGGCAGCAAAC-CTGTAAAATCTCAAATGCTCTTT--AA-GGG
10665858 GGTGTGAGTTCTTCGAGGTTTGATGAGGGATTACGGGGCCGCCAATATAAGGGCACAAGTGACC-
637 GGTGTGAGTTC-TCGAGGTTTGATGAGGGA-TA-GGGG--GCCAATATAAGGGC-CAAGT-ACCA
* * * ***
10665922 CCACCCATTGCACATCAATGTGCGCACACGCCCCTGG--CCCCCGAT--TCGGAACCTTGATGCC
695 GCACCCATCGCACATC-ATGTGCGCACAC-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * * * *
10665983 GCC-G-AAGGTT-TCCGGCG-CGCTCTGGCGATGGTGCCTCGGTAAAGAAAAATG-TGCACCAGC
758 GCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGC
* * * *
10666043 ACATGCTCGAGCCCAGCATGTGC--CTC-C--CCCTCGGTCTGGTCC-ATC-TAGACTAGGAATG
823 ACATGCCCGAGCCCAGCATGTGCTGC-CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATG
*
10666101 AACTCCATATG
887 AACTCCGTATG
* * *
10666112 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
10666177 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCATGCCGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
10666242 TGTTGCCGTAACCCTCAGTTTGGTTCGATCCTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* * ** * *
10666307 CCGATGAAACGAGCGGGCGGGCGGGCGACCACTACGCCAGCCAGAGAGACGGGATGCACAAGCCG
196 CCGACGAAACGAGCGGGC-GACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
10666372 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGTCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
*
10666437 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * * *
10666502 CGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACCGCTCGATATTTTTTAAAATTTTTTCGGA
390 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGA
* *
10666567 AGGAGTTTTAGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* **
10666632 TCAGCTAAAAATTCGGTGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * * * *
10666697 AATTTAATGGGTACTGGCAGCAATCCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGAGTGTTCC
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
10666761 CAAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGT-CGTAGCACCCATCGCACATCGT
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC-CAGCACCCATCGCACATCAT
* * * * * * *
10666825 GTGCACACACCCCCCGGCCCCCTCGATCGTCGAAACCCCAATGCTGTCGATCAGGTTCTTCGGCG
713 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
* ** * *
10666890 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGTATG
778 ATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
10666955 AGCTGCCACAGCCCTCAG-CCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
843 TGCTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
10667010 CTTACACTGGGAAAGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCATGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
10667075 CGGCCAGAGGGGTGAGATACGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
10667140 TGCTACCACAACCCT-TGATCTAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
131 TGCTGCCGCAACCCTCAG-TCTGGTTC-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
*** * *
10667203 AACCGACGAAACGAGC--G-GACGGGCGGGCACTATTTCGACCAGAGAGACGGGATGCGCAAGCT
194 AACCGACGAAACGAGCGGGCGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* **
10667265 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGTAAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* * * * *
10667330 TTATGGCTTGTAAACTCATACAATGGTGCTTTAAGCCTTCACATGAAGTTTCATGGCAAGATGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
10667395 TCATTTTCTATTTTTCACGATTATCAAAACTTTTTGA-GGTTCAGGATTTTTTAAAATTTTTCCA
389 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT-ACGGTTC-GGATTTTTTAAAATTTTTTCG
* * * *
10667459 GTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATCTTTGTTGGCATGCATAAAAGA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
**
10667524 ATTCAGCTAAAAACTCCTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
10667589 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
10667654 CTTGAGGTATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * * *
10667719 TGTGCGCCCATCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGACGCCAGTCAGGTTCTCTGAC
712 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
** ** ** * *
10667784 GATGCTCCGATGATGGTGCCCCGACGAA-AAAAATATGGCACCAGCACATGCCCGAGCCGAGCAC
777 GATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
10667848 GTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGAAATGAA-----TATG
842 GTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
10667899 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGGAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
10667964 CGGCCAGCGGGGTGGGATGCGCAAGTCGGGGATCGATCAGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * * * *
10668029 TACTGTCACAACCCTCGGTCTAGTCCAATCTTAGACTAGGAATCAAC-TCTGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCA
* * * * * *
10668093 ACTGATGAAATGAGCGGGTGGACGGGGCGTGAGGGCACTATGCCGGCCAGAGAGACGGGATACGC
195 ACCGACGAAACGAGCGGG-CGAC-GGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
10668158 AAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* * **
10668223 CATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTTGTGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
10668288 ACGACTCGTTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGAGTTTTTAAAATTT
384 ACGACTCG-TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GGATTTTTTAAAATTT
* * * *
10668353 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATTCTTGTATTTTTGTTGGGATGCACA
447 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
10668418 AAAAAATT-ATGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCA
512 AAAAAATTCA-GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
10668482 TTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
576 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
** * * * *
10668547 CAAGTTCTTGACGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAATTACCAGCACCCATCGC
641 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
10668612 ACATCATGTGTGCACATCGCCCCGGCCCCCGCGATCATCGGAACCCCAAAGCCGTCGGTCAGGTT
706 ACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
** * *
10668677 CTCCGATGATGCTCCGGCGATGGTGCCCTGGTGAAGAAAAATGCAGCA-CAGCACATGCCCGAGC
770 CTCCGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
10668741 CCAGCATGTGCTGCCGCAACCCTCGGTCC-A---G----T---C---------A----G-AT-
835 CCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
10668778 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * * * * *
10668843 CAGCCAGAGGGGTGAGACGCGAAAGCTGAGAATCGACCGGGTCCCTCTCTACGTACTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
10668908 TGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGACTGAGAATGAAC-TCTATATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCA
* * * * *
10668972 ACCGATGAAACGAGCGGGCGAGCGGGTGGGCGGGCACTATGCCGGCCAGAGCGATGGGTTGCGCA
195 ACCGACGAAACGAGCGGGCGA-C----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ** * **
10669037 GGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTATGTGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
10669102 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATTGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
10669167 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACCTTTTACGATTCGGGATTTTTTAAAATTTTT
385 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTT
* * * * *
10669232 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTTTTTGGCATGCATAA
449 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAA
*
10669297 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
10669362 TCAGACACTTTAATGGCTACTGGGAGCAAACCTGCAAAATCTCAAATGCTCTTTAACGGGGTGTG
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
10669427 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
643 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
10669492 ATCATGTGCACACACCACCCC--CAGCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTC
708 ATCATGTGCGCACACC-CCCCGGC-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * **
10669555 TCCGGCGATGCTGCGACGATGGTGCCCCGGTGAAGAGAAATATGGCACCAGCACATGCCCGAGCC
771 TCCGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* *
10669620 CAGCGTGTGCTGCCCCAA-CC-C--T-CG----G-TC-----C-----A-G---TCCG-AT-
836 CAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
*
10669656 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTC-GGCGCTCCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCGCTCAG
* * * *
10669720 CCGGCCAGAGGGGCGGGATGCTCAAGCCGGGGATCGGTCGTGTCCCCCTCTGCGTGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
10669785 CTGCTACCTCAACCCTCAATCCGG-TCTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCC
130 CTGCTGCCGCAACCCTCAGTCTGGTTC-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
* * ** * *
10669849 AATCGACGAAA--AG-AGTAGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCC
194 AACCGACGAAACGAGCGGGCGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
10669911 GTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCACTGCAATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* * *
10669976 TTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTAGGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
10670041 TCATTTTATATCTTTT-ACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
389 TCGTTTTCTAT-TTTTCACGATTTTCAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCG
* * **
10670105 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACGAAATG
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
10670170 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATATCCCCATTTCAA
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
10670235 ACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
10670287 TGGCTACTGG
Statistics
Matches: 9817, Mismatches: 1159, Indels: 618
0.85 0.10 0.05
Matches are distributed among these distances:
856 45 0.00
857 354 0.04
858 2 0.00
859 2 0.00
860 3 0.00
861 7 0.00
862 64 0.01
863 21 0.00
864 7 0.00
865 6 0.00
866 2 0.00
867 4 0.00
868 187 0.02
869 199 0.02
870 404 0.04
871 419 0.04
872 175 0.02
873 23 0.00
874 224 0.02
875 139 0.01
876 76 0.01
877 207 0.02
878 575 0.06
879 183 0.02
880 19 0.00
881 21 0.00
882 30 0.00
883 75 0.01
884 29 0.00
885 42 0.00
886 42 0.00
887 293 0.03
888 13 0.00
889 247 0.03
890 26 0.00
891 268 0.03
892 98 0.01
893 126 0.01
894 822 0.08
895 622 0.06
896 65 0.01
897 364 0.04
898 1167 0.12
899 783 0.08
900 195 0.02
901 63 0.01
902 36 0.00
903 400 0.04
904 267 0.03
905 105 0.01
906 268 0.03
907 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
CTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:10664427 original size:14 final size:14
Alignment explanation
Indices: 10664408--10664441 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
10664398 GCCAGAGGGG
10664408 CGGGATGCGCAAGC
1 CGGGATGCGCAAGC
10664422 CGGGATGCGCAAGC
1 CGGGATGCGCAAGC
10664436 CGGGAT
1 CGGGAT
10664442 CGGTCGGGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.44, T:0.09
Consensus pattern (14 bp):
CGGGATGCGCAAGC
Found at i:10665217 original size:26 final size:26
Alignment explanation
Indices: 10665188--10665240 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10665178 CCGATCCGAT
*
10665188 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
10665214 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
10665240 C
1 C
10665241 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10667013 original size:26 final size:26
Alignment explanation
Indices: 10666984--10667036 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10666974 CCAGTCCGAT
* *
10666984 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAAAGAACTCCGTATG
10667010 CTTACACTGGGAAAGAACTCCGTATG
1 CTTACACTGGGAAAGAACTCCGTATG
10667036 C
1 C
10667037 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAAAGAACTCCGTATG
Found at i:10671220 original size:641 final size:636
Alignment explanation
Indices: 10669664--10671581 Score: 2174
Period size: 641 Copynumber: 3.0 Consensus size: 636
10669654 ATCTTAGACT
** * *
10669664 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTC-GGCGCTCCGCCGGCCAG
1 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCGCTCAACAGGACAG
* ** * ** * *
10669728 AGGGGCGGGATGC-TCAAGCCGGGGATCGGTCGTGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
65 AGGGGCGGGATGCAT-AAGCCGGGAATCGACCGGGT-CCCCTCTGCGT-CTATCGATCCTACCAC
* * * * ** * ** *
10669792 CTCAACCCTCAATCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACG
127 CGCAACCCT--GTCCAGTCTGAGCTGAGACTGGAAATGAACTCCGTATAACTAAGCCAACCGACG
* * * * * * *
10669857 AAA--AGAGTA--GAC--G-G-G--CG-G-GCACTACGTCGGCCAGAGAGACGGGATGCGTAAGC
190 AAATCAGTGAACGGGCGGGCGAGCACGCGAGCACTACGCCAGCCAGAGAGACGGGATCCGCAAGC
* * ** * *
10669910 CGTGGATC-AATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCACTGCAAT
255 CATGAATCGAATAGGGTGGTAGGTGGGTTTAGGCACAT-TTCATATTTC-CAGTGCCAATGCCAT
* * *
10669974 TTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTAGGGCAAGACG
318 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACG
* *
10670039 ACTCATTTTATATCTTTT-ACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
383 ACTCGTTTTATAT-TTTTCACGATTTTCGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTT
* *
10670103 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACGAAA
446 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAA
** * * *
10670168 TGATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATATCCCCATTTC
510 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
10670233 AAACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGCTACT
575 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGCTACA
* *
10670295 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACTGGATAGA
1 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGACAGA
* * * * * ***
10670360 GGGGTGGGATGCATAAGCCGGGGATCGGCCGGGTCCCCTCTGCGTGCTGTCGATCCTGCTGTCGC
66 GGGGCGGGATGCATAAGCCGGGAATCGACCGGGTCCCCTCTGCGT-CTATCGATCCTACCACCGC
* * * * ** * *
10670425 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAA
130 AACCCT--GTCCAGTCTGAGCTGAGACTGGAAATGAACTCCGTATAACTAAGCCAACCGACGAAA
* ** * * * * *
10670490 TGAGTGGGCGGGCGGGCGGGCAGGCGGGCACTACGCCAGCCAGAGAGATGGGATGCGCAAGCCAT
193 TCAGTGAACGGGCGGGCGAGCACGCGAGCACTACGCCAGCCAGAGAGACGGGATCCGCAAGCCAT
*
10670555 GGATCG-ATAGGGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCCACGTGCCAATGCCATTTT
258 GAATCGAATAGGGTGGTAGGTGGGTTTAGGCACAT-TTCATATTTCCA-GTGCCAATGCCATTTT
10670619 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACT
* * *
10670684 CGTTTTTTGTTTTTCATGATTTTCGAAACTTTTTACGGTTCGGATTTCTTTAAAATTTTTTCGGA
386 CGTTTTATATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGATTT-TTTAAAATTTTTTCGGA
* *
10670749 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAATT
450 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATT
* *
10670814 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAGAAAGTGTCCCCATTTCAGACA
515 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
10670879 CTTTAATGGCTACTGGCAGCAAACCTGTAGAATCTTAAACGCTCTTTAATGGCTACA
580 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGCTACA
* * * *
10670936 GGGAATGAACTCCGTATGCCTAAGTCAATCCACGAAACGCGCGTGCGGGCGCTCAGCAGGCCAGA
1 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGACAGA
10671001 GGGGCGGGATGCATAAGCCGGGAATCGACC-GGTCCCCCTCTGCGT-TATCGATGCTCTACCACC
66 GGGGCGGGATGCATAAGCCGGGAATCGACCGGGT-CCCCTCTGCGTCTATCGAT-C-CTACCACC
* *
10671064 GCAAGCCT-T-CATTCTGCCAGCTGAGACTGGAAATGAACTCCGTATAACTAAGCCAAGCCGACG
128 GCAACCCTGTCCAGTCTG--AGCTGAGACTGGAAATGAACTCCGTATAACTAAGCCAA-CCGACG
* * * *
10671127 ATAA-CAG-GCAAC-GG-TGGCGAGCACGCGAGCACTGCAG-CGGCCAGA-AGGACGGGTTCCGC
190 A-AATCAGTG-AACGGGCGGGCGAGCACGCGAGCACTAC-GCCAGCCAGAGA-GACGGGATCCGC
* * * *
10671186 CAGTCGTCGAATCCGAATAGGTTGGTAGGTGGGTTTAGGCACATTCTCATCTATTTCTGCAGTGG
251 AAGCCAT-GAAT-CGAATAGGGTGGTAGGTGGGTTTAGGCACATT-TCA--TATTTC--CAGT-G
10671251 CCAATTGCCATTTTTATGGCTTTGTAAATTCATATCATATGGTACCCTTAAG-CTTCACGCTGAA
308 CCAA-TGCCATTTTTATGGC-TTGTAAATTCATA-CA-ATGGT-CCCTTAAGCCTTCACG-TGAA
* *
10671315 GTTTCATGGCAAGGACGACTCG-TTTCTATTTTTCACGATTATT-GAAACTTTTTACGGTTCGAG
367 GTTTAATGGCAA-GACGACTCGTTTTATATTTTTCACGATT-TTCGAAACTTTTTACGGTTCG-G
* *
10671378 ATTGGTTTAAAATTTTTTCGG-AGGA-TTTTGGCCCCAAACTTGGGTAGACGTGATCCAAAT-TA
429 ATT-TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT-GGTAGACGTGATCC--TTGTA
* * *
10671440 TTTTTTTTGGCATGGCACAAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTATGTGACCA
490 TTTTTGTTGGCAT-G--CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
10671505 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
552 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
10671570 AATGCTCTTTAA
617 AATGCTCTTTAA
10671582 GGGGGTGTGA
Statistics
Matches: 1120, Mismatches: 114, Indels: 83
0.85 0.09 0.06
Matches are distributed among these distances:
630 87 0.08
631 87 0.08
632 4 0.00
634 2 0.00
636 1 0.00
637 7 0.01
638 38 0.03
639 46 0.04
640 16 0.01
641 268 0.24
642 254 0.23
643 6 0.01
644 2 0.00
645 7 0.01
646 15 0.01
647 13 0.01
648 2 0.00
649 28 0.03
650 73 0.07
651 45 0.04
652 2 0.00
654 117 0.10
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (636 bp):
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGACAGA
GGGGCGGGATGCATAAGCCGGGAATCGACCGGGTCCCCTCTGCGTCTATCGATCCTACCACCGCA
ACCCTGTCCAGTCTGAGCTGAGACTGGAAATGAACTCCGTATAACTAAGCCAACCGACGAAATCA
GTGAACGGGCGGGCGAGCACGCGAGCACTACGCCAGCCAGAGAGACGGGATCCGCAAGCCATGAA
TCGAATAGGGTGGTAGGTGGGTTTAGGCACATTTCATATTTCCAGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTT
TATATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGCTACA
Found at i:10671847 original size:26 final size:26
Alignment explanation
Indices: 10671811--10671863 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10671801 CCGGTCCAAT
*
10671811 CTTAGAGTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
10671837 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10671863 C
1 C
10671864 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10675067 original size:26 final size:26
Alignment explanation
Indices: 10675036--10675088 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10675026 GTTGACTTAG
*
10675036 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10675062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10675088 G
1 G
10675089 ATCAGATCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10675971 original size:26 final size:26
Alignment explanation
Indices: 10675935--10675987 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10675925 GTTGACTTAG
10675935 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10675961 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10675987 G
1 G
10675988 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10676874 original size:26 final size:26
Alignment explanation
Indices: 10676838--10676889 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
10676828 GTTGACTTAG
*
10676838 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
10676864 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
10676890 CATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:10677141 original size:903 final size:901
Alignment explanation
Indices: 10674250--10685541 Score: 12689
Period size: 903 Copynumber: 12.8 Consensus size: 901
10674240 CTTGTACACT
* * * ** * *
10674250 TTTTTCTTCGCCGAGGCA-CATCGTCGGAGCAGCACCGGAGAACCTGACCGGTGGCATT-AGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * * *
10674313 CCGGCGATCGGGGGGCCGGGTGGGGTGTGTGCATATGATGTGCGTTGGGTGCTGGTACTTGGCCC
66 CCGACGATCGGGGGGCCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * * *
10674378 TTATATTGGCCCCCTATCCCTCATCAAACCTAGATAACTCATACCCCTTTAAAGAGCATTTGAGA
130 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
10674443 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGGC
195 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
10674508 ACAAAATCTTGTACACTTCGAGTTTTTAGC--AATTTTTTTGTGCATGCCAACAAAAATACAAGT
260 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
10674571 ATCACGTCTACCAAGTTTGGAGCCAAAACACCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTA
325 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTA
** *
10674636 AAAAGTTTTGAAAATCGTGAAAATTAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
390 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * * *
10674701 TTAAAGGTCCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGAT
455 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
** *
10674766 GCACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
520 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
** * * * * * *
10674831 AGTGCTTGCCCGCCCTCCCACCCGCGCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCT
585 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * *
10674896 AGTCTAAGATCAGATCGGACTAAGGATTGTGGCAACAGGATCGGCAGCATGCAGAGGGGGACCCA
650 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * ** * *
10674961 ACCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGTCGGCTGAGCACCCATACGCTCATTTCGTTG
715 ACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGG
* * *
10675026 GTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
779 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTACCAGTC-AAGAT
* * * * * * *
10675091 CAGATCGCACCGAGGGTTACAGCAGCACATCCTGGGCTCGGGCATGTGTTGGTGTCGCA
843 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
* ** *
10675150 TTATTT-TTCGTCGGGGCACCATCATTAGAGTATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
1 TT-TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
* * * *
10675214 TCCGATGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCC
65 TCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
10675279 TTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
130 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
10675344 TTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTC
195 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
10675409 ACAAAATCTTGTACACGTT-GAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAG
260 ACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * *
10675473 GATCATGTCTACCAAGATTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGC
324 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT
** * * *
10675538 AAAAAGTTTCAAAAATCAAGAAAAATAGAAAACAAGTTGTCTTGTCATGAAACTTCACGTGAAGG
389 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
***
10675603 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
454 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * ** * * *
10675668 TGTGCCTAAACCCACCTATCAGCCTATCGATCCACAACTTGCGCATCTCATCTCTGTGGCCGGCG
519 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
10675733 TAGT----GCCCGCTCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCC
584 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * ** * * ** * **
10675794 CAGTCTTAGTTCGGACCAAACTGAGTGTTACGGCAGCAGGATCCACAGCACGTAGAATGGGACCC
649 CAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
** **
10675859 GACCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCTA-CTGAGCACCCGCACGCTCGTTTTAT
714 GACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCC-AGCTGAGCACCCGCACGCTCGTTTCGT
* * * *
10675923 GCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
777 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTACCAGTC-AAG
* * *
10675988 ATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTGGGGCATGTGTTGGTGTCGCA
841 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
*
10676049 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
*
10676114 CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
66 CCGACGATC-GGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
10676179 TTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCTTTAAAGAGCATTTGACA
130 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
10676244 TTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
195 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
10676309 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGT
260 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * *
10676374 ATCACGTCTACCAAGTTTGGAGCCAAAACACCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCA
325 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTA
** *
10676439 AAAAGTTTTGAAAATCGTGAAATATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
390 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
10676504 TTAAGGGTCCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGAT
455 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * *
10676569 GTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGCGCATCCCATCTTTCTGGCCGACGT
520 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * * * *
10676634 AGTGCCCGTCGGCCCTCTCACCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
585 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * ** * *
10676699 AGTCTAAGATC-GAACCGAACTGAGGGTTACGGCAATAGGATCGGTAGCACGTAGA-GGGGACCC
650 AGTCTAAGATCAG-ACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * * * * *
10676762 AACCGATCCTCGACTTGTGCATCTCGCCCCTTTGGCCAGTTGAGCACCCACACGCTCGTTTCGTG
714 GACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTG
* *
10676827 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTACCAGTCTAACA
778 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTACCAGTC-AAGA
* * * *
10676892 TCAGACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACA
842 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
* * * *
10676952 TTTTTCTTCGTCGGGGAACCATCGTCAGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * **
10677017 CTGACGATCGGGGGGGCCCGAGGGGTGTGCGCCCATGATGTGCGATAAGTGCTGGTACTTGGCCC
66 CCGACGATC-GGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
10677082 TTATATAGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
130 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
10677147 TTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTCAAATGGGGACATTTTTTTCAAATGGTC
195 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
10677212 ACAAAATTTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
260 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
10677277 ATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGACAAAATTTTAAAAAATCCC-AAGCCGT
325 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAA-CCGT
* * * *
10677341 AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGG
389 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * *
10677406 CTTAAGAGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCAAAAATATAAAGA
454 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * *
10677471 TATGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCG
519 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * * * * * * *
10677536 TAGTGCCTGGCCGCTCACTCGCCCGTTCGTTTTGTCAGTTGGCTTAGGCATATGGAGTTCATTTC
584 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * ** * * **
10677601 GAGTCTAAGATCAAACTGGACCGAGGGTTGCTCCAGCAGGATCGACAGGACGCAGAGGAAGACCC
649 CAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* *
10677666 GGCCGATCCCTGGCTTGCGCATCCCGCTCCC-CTGGCC-GACTGAGCACCCGTACGCTCGTTTCG
714 GACCGATCCC-GGCTTGCGCATCCCGC-CCCTCTGGCCAG-CTGAGCACCCGCACGCTCGTTTCG
* *
10677729 TGGTTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCATT-CC---C-A
776 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTACCAGTCAA
* * *
10677788 GATCGGACTGGATCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
840 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
* * * ** *
10677850 TTTCTCTTCATCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* *
10677915 TCGACAATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
66 CCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
** *
10677979 TATATT-G-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCCTAAAGAGCATTTGAGAT
131 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
10678042 TTTACAGGTTTGCTGCCAGTAGCCATT-AA----CTGAAATGGGGACACTTTTTTCAAATGGTCA
196 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
10678102 CAAAATCTTGTACA-TTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATA-AAAGA
261 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
10678165 TCAC-TCTACCAAGTTTGGGGTCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCTCAAACCGCA
326 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTA
* * *
10678228 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCGTGAAACTTCACGTGAAGGC
390 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
10678293 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGCAAAAATATGAAGAT
455 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * *
10678358 GTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTGCGCATCCCATCTCTCTGGCCGACGT
520 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * * * * *
10678423 AGTGGCCGCCCGCCCGCCCGTCCACTCGTTTCATCCGTTGGCTTAGGCATACAGAGTTCATTCCT
585 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
** * * * * * *
10678488 AGTCTAAGATCAGACCGGACCAAGGGTTACGACAGTAGGATCGGGAGCACGCAGAGGGGGAACCA
650 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * *
10678553 ACCGATCTCCAGCTTACGCATCCCGCCCCTCTGGCCAGCTGGGCACCCGCATGCTCATTTCGTGG
715 ACCGATC-CCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGG
*
10678618 GTTGACTTAGGCATATGGAGTTCA-T-----TC----C-T----A----A-T--C--T-AAGATC
779 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTACCAGTCAAGATC
* * * * ** *
10678658 GGACCGGACCGAGGGTTACGACGGCACATGCTAGGCTTAGGCAGGTGTTGGTGCCGCA
844 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
**
10678716 TTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGCATCGTCGGAGAACCTGACCGGCG
1 TTTTTCTTCGTCGGGGCACCA---TC---G-----TCGGAGCATCGTCGGAGAACCTGACCGGCG
* * * * * * *
10678781 GCATTGGGGTTCTGGCGATCGGGGGGACCGATGGGGTGTGGGCACATGATGTACGATGAGTGCTG
55 GCATTGGGGTTCCGACGATCGGGGGGCCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * *
10678846 GTAGTTGGCCCTTATATTGGCGCCTTATCCCTCATCAAATCTTGAGAACTCACACCCCCTTAAAG
119 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
* * * *
10678911 AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTAAAATAGGGACACTTTT
184 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
10678976 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACA
249 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
10679041 AAAATACAAGGATCACGTCTACCAA-TTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAA
314 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAA
* * * *
10679104 TCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCCTGCCATGAAACT
378 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
10679169 TGACCATGCTAAGG-TTTAGGGACCTTTGTATGACATTTACAAGCCATAAAAATGGCATTGGCCC
443 TCA-CGTG--AAGGCTTAAGGGACCATTGTATGA-ATTTACAAGCCATAAAAATGGCATTGG-CA
* ** *
10679233 TGCAGAAATATGAAGATGTGCCTAAACCCAACATA-CA-CCTAATCGAT-CACGGCTTAAAG-TT
503 TGCAGAAATATGAAGATGTGCCTAAACCC-ACCTACCACCCT-ATCGATCCACGGCTT-GCGCAT
* * ** * * *
10679294 CCCGTCTCTCTGGTCGGCGTAGTGCCTGGTC-ACTGCCCGCCCACTCGTTTCGTC-GTTGGCATT
565 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC-TT
* ***** **** * *
10679357 A---AAAC--A-TTCCCGGACAGTCTAAGACTCAAATGAAATCACT-ATGATGTG-GGACAGCAG
629 AGGCATACGGAGTTCATTCCCAGTCTAAGA-TC--A-GACCGGACTGAGGGT-TGCGG-CAGCAG
** * ** * * * * *
10679414 GAT-TACAGCAC-CAGA--GCGACAGGA-C-AGCGCCAG--TGGGCGAT---G----TAT-CCCA
688 GATCGGCAGCACGCAGAGGGGGACCCGACCGATC-CCGGCTTGCGC-ATCCCGCCCCTCTGGCCA
* * * * *
10679463 GCT---CGCCCGCAC-C-CG-TTCGTCGGTTGGCTTAGGCATATGGAGCTCATTCCCAGTCTAAG
751 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * ** ** *
10679522 -AT-CGAACCGGCCCGAGGGTTGCAGCAGCAGGATCAGCAGCATGCAGAGGGGGACCCGACCGAT
816 CATACGAA---GTTC-A---TT--A-C--CA-G-TCA--AG-AT-CGGA-CCGGA-CCGAGGGTT
** * * ** * * * ***
10679585 -CCCCTACTTGCGCATCCTGCCCCTCTGGCCGA-CTG-AGCACCCGCA
861 GCGGC-A---GCACATGCTG-GGCTC-GGGC-ATGTGTTGGTGCCGCA
*** * * * ** * * ** * * ***
10679630 -CGCTCGTTTCGT-GGGTTG-A-CTTAGGCAAACGAAATTCATTCCCAG--TCTAAGCATACGG-
1 TTTTTC--TTCGTCGGG--GCACCATCGTCGGA-G-CA-TC-GTCGGAGAACCTGA-CCGGCGGC
** * * ** * ** * *
10679688 AGTT--CATTCCCA-G-TCTAAGATGACACC--GGACTGAGGGCACATGATGTGCGATGGGTGCT
57 A-TTGGGGTTCCGACGATC--GGGGGGC-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
10679747 GGTTCTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
118 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
*
10679812 GAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCCT-AAAT-GGGACAC-T
183 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTT
*
10679874 TTTTCAAATGGTCA-AAAATCTTGTACACTTCGA-TTTAT-GCTGAATTTTTTGTGTGCATGCCA
247 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-TGTGCATGCCA
* * * * * * *
10679936 AGAAAAAATACAAGGGT-ACGTCTACCAATTTTGGGGGCCAAAAATCC-TCCAAAAAAATTTAAA
311 A-CAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTTCGAAAAAATTTTAA
* * *
10679999 AAAATCCCGAACCATAAGAAAGTTT--GAAATCGTG-AAAATAGAAAACGAGTCATCTTGCCATG
374 AAAATCCCGAACCGTAA-AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
**
10680061 -AACTT-GTGTGAAGGCTTAAGGG--CATTG-ATGAATTTACAAGCCATAAAAATGGCATT-G-A
438 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
10680119 TG-TGAAATATGAAGATGTGCCTAAACCCACCTACCA-CC-ATCGATGCCACGGCTTGCG-ATCC
503 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CCACGGCTTGCGCATCC
** * * * *
10680180 TATCTCTCTGGCCGGCATAGT----G-TCGCCCGTCTGCCCGCTCGTTTCGTCGGTTGGCTTAGG
567 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
10680240 C-TACGGAGTTCATTTCCCAGTCTAAGATCA-ATCGGACTGAGGGTTCGCACGTAGCA-AATCGG
632 CATACGGAGTTCA-TTCCCAGTCTAAGATCAGACCGGACTGAGGGTT-GC-GGCAGCAGGATCGG
* * * * *
10680302 CAGCACGTAGAGGGGGACCCGATCGATCCC--C-T--G-A---AGACCCTAT-G---GCT-A-C-
694 CAGCACGCAGAGGGGGACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCA
* * *
10680351 GCCGCACGC-CG-TTCGAGGGTTGACTTA-GCATACGGAG-TCA-----AGTCTAAG-AT-TG--
759 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
* * * * *
10680403 G--------CAGT----ATCGAACTGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATT
824 GTTCATTACCAGTCAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* *
10680456 TGCTGGTGTCGCA
889 TGTTGGTGCCGCA
* * ** * ** * *
10680469 TTTTTCTTTGTCGAGGCACCATCACCAGAGCATCGTCGGAGAACCTGACCGATGGAATTAGGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * *
10680534 CTGGCGATCGGGGTGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
66 CCGACGATCGGGG-GGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
10680599 TTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGAATTTGAGA
130 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
10680663 TTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTT
195 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
10680728 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAGAAAAATAGAAGG
260 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* ** * * * * *
10680793 ATCACGTCTATCAAGTTTGATGCAAAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAACCATA
325 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTA
* *
10680858 AAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGC
390 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
10680923 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGAT
455 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * * * **
10680988 GTGCCTAAACCCACCTACCGCCCTATTGATCCATGGCTTACGCAGCCCGTCTCTCTGGCCGGTAT
520 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * *
10681053 AGT----GTCCGCCCGCCCGCCCGCTCCTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCC
585 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
** ** * * * *
10681114 AGTCTAAGATCAGACTAGACCAAGGGTTGCGGTAGCAGGATCAGTAGCACGTAGAGGGGGACCCG
650 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * * ** *
10681179 ATCGATCCCTGGCTTGCTCATCCCGCCCCTTTGGCCGGCTAAGCACTGGCACGCTCATTTCGTGG
715 ACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGG
*
10681244 GTTAACTTAGGCATACGGAGTTCA----C--TC----C---C--A----A-T--C--T-AAGATC
779 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTACCAGTCAAGATC
* * *
10681284 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTTCCGCA
844 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
* * * *
10681342 TTTTTCTTCGTC---G---CA--G-C--ATCA-C--CGGAGAACCTGACCAGTGGCATTGTGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
*
10681393 CCGACGATCGAGGGGG-CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
66 CCGACGATCG-GGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * * *
10681457 TTATATAGGCCCCCTGTCCCTCATCAATCATTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
130 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
10681522 TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
195 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * *
10681587 CCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAATG
260 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* ** * * * *
10681652 ATCATGTCTACCAAGTTT-GGGTAAAAACTCCTTTCGAAAAAATTTGAAAAAAACCCGAACTGCA
325 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTA
*
10681716 AAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
390 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
10681781 TTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACGTAGAAATATGAAGAT
455 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * *
10681846 GTGCCTAAACCCACTTACCACCCTATCGATCCATGGCTTGCGTATCCCGTCTCTCTGGCCGGCGT
520 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * * * * * * *
10681911 AGTGCCTGCCTGCCCGCCCTCCCACTCGTTTCATCGATTGGCTTAGGCATACGAAATTGATTCCC
585 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * * * *
10681976 AGTCTAA-ATCAGACCAGACCAAAGGTTGCGACAGCAGCATCGGCAGCACACAGAGGGGGACCCG
650 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
** * * * *
10682040 ACCGATCCCTGGCTTGCGCATCCCATCCCTCTGGCCGGC-AAGGCACCCGCACGCTCATTTTGTG
715 ACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCAGCTGA-GCACCCGCACGCTCGTTTCGTG
10682104 GGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T---AAG---A-T---AG----GA-
778 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTACCAGTCAAGAT
* * * *
10682148 C-GA---GACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA
843 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
* ** * *
10682203 TTTTTGTTCACCGGGGCACCA---T-----CA---TCGAAGAACCTGACTGGCGGCATTGGGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* * *
10682257 TCGACGATC-GGGGGACCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCGT
66 CCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * * * *
10682321 TATATTAGCACCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCGTTCGATAT
131 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
10682386 TTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
196 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
10682451 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACCAAAATACAAGGA
261 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* ** * * * *
10682516 TCACGACTAATAAGTTTGGGGCAAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCG-CA
326 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAA
** * *
10682580 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACATGAAGGCT
391 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
10682645 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGTA-AAATATGAAGATG
456 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
*
10682709 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGATCTCTCTGGCCGGCAT
521 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-TCTCTCTGGCCGGCGT
* * *
10682773 AGTGCCTGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCC
585 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * *
10682838 AGTCTAATATCAGACCGGACTGAGGGTTGCAGTAGCAAGATCGGCAGCACGCAGAGAGGGACCCG
650 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* ** * *
10682903 ACCGATCCTTGGCTTGAACATCCCGCCTCTCTGGCCGGCTGAGCACCCGCACGCTTC-TTTCGTG
715 ACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGC-TCGTTTCGTG
10682967 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---------A--C----T
778 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTACCAGTCAAGAT
* * * *
10683013 ---A---GACCGAGGGTTGCAGTAGCACATGCTGCGCTCGGGCATGTGTTGGTGCTGCA
843 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
* * *
10683066 TTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
** * *
10683131 CCGGTGATCGGGTGGGCCGGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCC
66 CCGACGATCGGG-GGGCC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
10683196 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAA
129 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
10683261 ATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGT
194 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
10683326 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAACAAAAATACAAG
259 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* *
10683391 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCGAAAAAATTTTAAAAAATCCCGAACCGC
324 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT
* * * * *
10683456 AAAAAGCTTCAAAAATCATGAAAGATAGAAAATGAGTCGTCTTGCCACGAAACTTCACGTGAAGG
389 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
10683521 CTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATAGGCACGTAGAAATATGAAGA
454 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
10683585 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATTCCGTCTCTCTGGCCGGCG
519 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * *
10683650 TAGTGCCCGCCTGTCCGCCCGCCCGGTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
584 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
10683715 CAATCTAAGATCAGACCAGGACTGAGGGTTGTGGCAGCAAGATTGGCAGCACGCAAAGGGGCACC
649 CAGTCTAAGATCAGACC-GGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * ** * * *
10683780 CGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCTTGCTAAGCACCCACACGCTCGTTTCAT
713 CGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGT
* * * *
10683845 GAGTTGAGTTAGGCATACGGAGTCCATTCCCAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAA
777 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTACCAGTC-AA
* * *
10683909 GATCGGACCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCA
840 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
* * **
10683971 TTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGATGGCATTGGGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * * *
10684036 CCAACGATCAGGGGG-CGGGGGGGTGTGCGCACATGATGTGCAATAGGTGCTGGTACTTGGCCCT
66 CCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
10684100 TATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
131 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
10684165 TTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
196 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
10684230 C-AAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
261 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
*
10684294 TCACATCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCCCGAACCGTA
326 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTA
**
10684358 AAAAGTTTCAAAAATCGTGAAAAATTCAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
390 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
10684423 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
455 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * *
10684488 GTGCCTAAACCAACCTACCTCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
520 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* ** * *
10684553 AGT----GCCCGCCCACCCGCTTGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
585 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
** * * * *
10684614 AGTCTAAGATCAGAATGGAGTGAGGGTTGTGGCAGCAGGATCAGCAGCAAGCAGAGGGGGACCCG
650 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
** * * * * * *
10684679 GTCGATCCCCGACTTTCGTATCTCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTTGTTTCGTGG
715 ACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGG
* *
10684744 GTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT-CACAGTCTAAGA
779 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTAC-CAGTC-AAGA
* * * * * *
10684808 TTGGATCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGTTGGTGCCACA
842 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
*
10684868 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
1 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* * *
10684933 CCGACGCTCAGGGGG--CGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
66 CCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
10684996 TATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
131 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
10685061 TTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCA
196 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
10685126 CAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTATGCATACCAAAAAAAATACAAGGA
261 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
10685191 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCGAAAAAATTTTAAAAAATCTCGAACCATAA
326 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAA
* * *
10685256 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCC
391 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
10685321 TAAGGGACCGTTGTATGAATTTACAAGCC-TCAAAAATGGCATTGGAACGTAGAAATATGAAGAT
456 TAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * *
10685385 GTACCTAAATCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGTGT
520 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* *
10685450 AGT--------GCCCGCCCGCCCGCTCGTTTTGTCCGTTGGCTTAGGCATACGGAGTTCATTCCC
585 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * *
10685507 AGTCTAAGATCGGATGGGGCCGAGGGTTGCGGCAG
650 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAG
10685542 TGCGATGGGT
Statistics
Matches: 8930, Mismatches: 1120, Indels: 691
0.83 0.10 0.06
Matches are distributed among these distances:
835 4 0.00
836 8 0.00
837 7 0.00
838 18 0.00
839 74 0.01
840 99 0.01
841 13 0.00
842 49 0.01
843 65 0.01
844 22 0.00
845 30 0.00
846 7 0.00
847 15 0.00
849 5 0.00
850 28 0.00
851 1 0.00
852 3 0.00
853 33 0.00
854 13 0.00
855 35 0.00
856 86 0.01
857 20 0.00
858 301 0.03
859 191 0.02
860 6 0.00
861 185 0.02
862 194 0.02
863 542 0.06
864 79 0.01
865 4 0.00
866 84 0.01
867 35 0.00
868 6 0.00
869 3 0.00
870 12 0.00
871 4 0.00
872 4 0.00
873 78 0.01
874 38 0.00
875 17 0.00
876 17 0.00
877 364 0.04
878 240 0.03
879 178 0.02
880 33 0.00
881 90 0.01
882 21 0.00
883 37 0.00
884 64 0.01
885 51 0.01
886 467 0.05
887 71 0.01
888 164 0.02
889 84 0.01
890 43 0.00
891 70 0.01
892 43 0.00
893 87 0.01
894 83 0.01
895 1 0.00
896 226 0.03
897 613 0.07
898 219 0.02
899 391 0.04
900 523 0.06
901 439 0.05
902 426 0.05
903 1078 0.12
904 205 0.02
905 121 0.01
906 10 0.00
907 6 0.00
908 4 0.00
909 5 0.00
910 6 0.00
911 1 0.00
913 9 0.00
914 12 0.00
915 8 0.00
916 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
CCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAA
AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
GTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
CCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTACCAGTCAAGATCGG
ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
Found at i:10678754 original size:11 final size:11
Alignment explanation
Indices: 10678735--10678767 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
10678725 ACCGGGGCAC
10678735 CATCGTCGGAG
1 CATCGTCGGAG
*
10678746 CATCATCGGAG
1 CATCGTCGGAG
10678757 CATCGTCGGAG
1 CATCGTCGGAG
10678768 AACCTGACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:10683893 original size:26 final size:26
Alignment explanation
Indices: 10683857--10683909 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10683847 GTTGAGTTAG
*
10683857 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
*
10683883 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
10683909 G
1 G
10683910 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:10684790 original size:26 final size:26
Alignment explanation
Indices: 10684754--10684806 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10684744 GTTGACTTAG
10684754 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGGAGTTCATTCAC-AGTCTAA
10684780 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
10684806 G
1 G
10684807 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:10686062 original size:572 final size:572
Alignment explanation
Indices: 10684969--10686113 Score: 1876
Period size: 572 Copynumber: 2.0 Consensus size: 572
10684959 CGCACATGAT
* *
10684969 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACT
1 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
10685034 CACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
66 CACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
* *
10685099 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTT
131 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTT
* * *
10685164 TTATGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCGAA
196 TTATGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACACCTTCCGAA
*
10685229 AAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
261 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
10685294 CTTGCCATGAAACTTCACGTGAAAGCCTAAGGGACCGTTGTATGAATTTACAAGCCTCAAAAATG
326 CTTGCCATGAAACTTCACGTGAAAGCCTAAGGGACCATTGTATGAATTTACAAGCATCAAAAATG
*
10685359 GCATTGGAACGTAGAAATATGAAGATGTACCTAAATCCACCTACCACCCTATCGATCCACGGCTT
391 GCATTGGAACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * ** ** *
10685424 ACGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCTCGTTTTGTCCGTTGGCTTAGG
456 ACGCATCCCGTCTCTCTGGCCGACGTAGTACCCGACCGCCCGCTCGTTTCATCAATTGGATTAGG
* ** ** *
10685489 CATACGGAGTTCATTCCCAGTCTAAGATCGGATGGGGCCGAGGGTTGCGGCA
521 CATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCA
*
10685541 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACT
1 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * * *
10685606 CATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTACCAGTATCCATTAAAGTGTCTGA
66 CACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
*
10685671 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTT
131 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTT
* * *
10685736 TTGTGTATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACACCTTCCGAA
196 TTATGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACACCTTCCGAA
* * *
10685801 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGT
261 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
10685866 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCATTAAAAATG
326 CTTGCCATGAAACTTCACGTGAAAGCCTAAGGGACCATTGTATGAATTTACAAGCATCAAAAATG
* * *
10685931 GCATTGGCACGTAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTT
391 GCATTGGAACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
10685996 ACGCATCCCGTCTCTCTGGCCGACGTAGTACCCGACCGCCCGCTCGTTTCATCAATTGGATTAGG
456 ACGCATCCCGTCTCTCTGGCCGACGTAGTACCCGACCGCCCGCTCGTTTCATCAATTGGATTAGG
10686061 CATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCA
521 CATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCA
10686113 G
1 G
10686114 CAAGATCAAA
Statistics
Matches: 527, Mismatches: 46, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
572 527 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (572 bp):
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTT
TTATGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACACCTTCCGAA
AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAAGCCTAAGGGACCATTGTATGAATTTACAAGCATCAAAAATG
GCATTGGAACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
ACGCATCCCGTCTCTCTGGCCGACGTAGTACCCGACCGCCCGCTCGTTTCATCAATTGGATTAGG
CATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCA
Found at i:10686256 original size:26 final size:26
Alignment explanation
Indices: 10686219--10686302 Score: 114
Period size: 26 Copynumber: 3.0 Consensus size: 26
10686209 GTTCACTTAG
*
10686219 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10686245 GCATACGAAGTTCAGTTCATTCCCAGTCTAA
1 GCATACG--G---AGTTCATTCCCAGTCTAA
10686276 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10686302 G
1 G
10686303 ATCAGACCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 10
0.83 0.02 0.16
Matches are distributed among these distances:
26 26 0.50
28 1 0.02
29 1 0.02
31 24 0.46
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10686265 original size:31 final size:31
Alignment explanation
Indices: 10686227--10686289 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
10686217 AGGCATACGG
10686227 AGTTCATTCCCAATCTAAGCATACGAAGTTC
1 AGTTCATTCCCAATCTAAGCATACGAAGTTC
* *
10686258 AGTTCATTCCCAGTCTAAGCATACGGAGTTC
1 AGTTCATTCCCAATCTAAGCATACGAAGTTC
10686289 A
1 A
10686290 TTCCCAGTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (31 bp):
AGTTCATTCCCAATCTAAGCATACGAAGTTC
Found at i:10687172 original size:26 final size:26
Alignment explanation
Indices: 10687136--10687188 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10687126 GTTGACTTAG
10687136 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10687162 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10687188 G
1 G
10687189 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10688523 original size:699 final size:712
Alignment explanation
Indices: 10687162--10688630 Score: 2221
Period size: 699 Copynumber: 2.1 Consensus size: 712
10687152 CCCAGTCTAA
* * *
10687162 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAACACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGATGGG
* *
10687227 CTTGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCATAGA
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCAACGT-ATAGA
* * * *
10687292 ACCTGACCGACGACATTGAGGTTCCGGCGCTCGGGGGGCGACAGGTGTGCGCACATGATGTGCGA
130 ACCTGACCGA-GACATTGAGGTTCCGACGATAGGGGGCCGACAGGTGTGCGCACATGATGTGCGA
*
10687357 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCAAAAACTCACACC
194 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACC
* *
10687422 CCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGTGG
259 CCTTAAAGAGCATTTGAGATTTTAAAGGTTTCCTGCCAGTAGCCATTAAAATGTCTAAAATGGGG
* *
10687487 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGTA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTATGCA
*
10687552 TACCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
389 TACCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
** *
10687617 TTAAAAATTTCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTTGCCA
454 TTAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCA
*
10687682 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGG
519 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAACCATAAAAATGGCATTGG
*
10687747 CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
584 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
10687812 CTGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCG-C-C-CGCTCATTTCGTCGGTTGGCTTAG
649 CCGTCCCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCACGCTCATTTCGTCGGTTGGCATAG
* * *
10687873 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGATGGG
* * * * *
10687938 CTCGGGGATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-AAC-T-T-G-A
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCAACGTATAGAA
* ***
10687998 CC-GA-CG-G-CATTGGGGTTCCGACGATAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
131 CCTGACCGAGACATTGAGGTTCCGACGATAGGGGGCCGACAGGTGTGCGCACATGATGTGCGATG
* * * * *
10688059 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCGTCAAACCTCGAGAACTCACACCCC
196 GGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCC
* * * *
10688124 TTAAAGGGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
261 TTAAAGAGCATTTGAGATTTTAAAGGTTTCCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGAC
* * * *
10688189 ACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAGTTATTTTGTGCATG
326 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTATGCATA
* * *
10688254 CC-AACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCC-AAACTCCTTCCAAAAAAATTTT
391 CCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* ** * *
10688317 AAAAAATCCCAAACCGTAAAACTTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCAT
456 -AAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCAT
*
10688382 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
520 GAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAACCATAAAAATGGCATTGGC
* *
10688447 ACACAGAAATATGAAGATGTGCCTAAACCCATCTACCACCTTATCGATCCACGGCTTGCGCATCC
585 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
10688512 CGTCCCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCACGCTCGTTTCGTCGGTTGGCATAG
650 CGTCCCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCACGCTCATTTCGTCGGTTGGCATAG
* *
10688576 GCATACGGAGTTCATTCCCAGTCTAA-ATCAGACCAGACCGAGGGTTACGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
10688631 GGATCGACAG
Statistics
Matches: 687, Mismatches: 66, Indels: 19
0.89 0.09 0.02
Matches are distributed among these distances:
698 21 0.03
699 247 0.36
700 225 0.33
701 2 0.00
702 27 0.04
703 49 0.07
704 2 0.00
705 3 0.00
706 1 0.00
707 1 0.00
709 1 0.00
710 2 0.00
711 106 0.15
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (712 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGATGGG
CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCAACGTATAGAA
CCTGACCGAGACATTGAGGTTCCGACGATAGGGGGCCGACAGGTGTGCGCACATGATGTGCGATG
GGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCC
TTAAAGAGCATTTGAGATTTTAAAGGTTTCCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTATGCATA
CCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
AAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAACCATAAAAATGGCATTGGCA
CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCCCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCACGCTCATTTCGTCGGTTGGCATAG
Found at i:10688764 original size:26 final size:26
Alignment explanation
Indices: 10688734--10688785 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
10688724 GTTGACTTAG
* *
10688734 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
10688760 GCATATGGAGTTGATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10688786 AATCGGACCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10690347 original size:26 final size:26
Alignment explanation
Indices: 10690318--10690367 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
10690308 GTTGACATAG
10690318 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10690344 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
10690368 GAGATTGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10692124 original size:26 final size:25
Alignment explanation
Indices: 10692085--10692137 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
10692075 TGGGTTGACT
* *
10692085 TAGGTATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATT-CCAGTC
10692111 TAGGCATACAGAGTTCATTCCAGTC
1 TAGGCATACAGAGTTCATTCCAGTC
10692136 TA
1 TA
10692138 AGATCGGACT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (25 bp):
TAGGCATACAGAGTTCATTCCAGTC
Found at i:10693430 original size:21 final size:21
Alignment explanation
Indices: 10693404--10693448 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
10693394 GAGGATCAAT
10693404 CTTATTGATT-GAGGATTGATC
1 CTTATT-ATTAGAGGATTGATC
*
10693425 CTTATTCTTAGAGGATTGATC
1 CTTATTATTAGAGGATTGATC
10693446 CTT
1 CTT
10693449 CCCTCAAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.44
Consensus pattern (21 bp):
CTTATTATTAGAGGATTGATC
Found at i:10702214 original size:321 final size:321
Alignment explanation
Indices: 10701632--10702250 Score: 956
Period size: 321 Copynumber: 1.9 Consensus size: 321
10701622 TTGCTCAGGC
* *
10701632 ATTCATTACCCAGTATTGACACATTATAGACTTGGCTCATGATCACCTTTCTCTATAGAACATGG
1 ATTCATTACCCAGTACTGACACATTATAGACTTAGCTCATGATCACCTTTCTCTATAGAACATGG
* ** * *
10701697 AGAAGAAAGTGACGAAGTCATTTAAAGAATATGCTTAAAAGTTAAAGGATATGGCAGCTCAAGTC
66 AGAAGAAAGTGACAAAGTCATTTAAAGAATACACTTAAAAGTAAAAGGATATGGCAGCTCAAATC
* *
10701762 CAACCACCTTTAATTGAGAAGAAGACTATAGTGCTATTTGTGAATACCCTAAAAGCACCTTGTTA
131 CAACCACCTCTAATTGAGAAGAAGACTATAGTGCTATTTGTGAATACCATAAAAGCACCTTGTTA
* * *
10701827 TGAGAAAATGATAGGACATGTAACAAAAAACTTTATTAATATGGTGATCTCAGGGAAGATTATTG
196 TGAGAAAATGATAGAAAATGTAACAAAAAACTTTATTAATATGGTGATCTCAAGGAAGATTATTG
10701892 AAAATGCTATCAAGAAT-AGCAAACTTGAAAGAAAAGAGACACCAATATAAAGAAAAGAGGG
261 AAAATGCTATCAAGAATGA-CAAACTTGAAAGAAAAGAGACACCAATATAAAGAAAAGAGGG
* * * * * *
10701953 ATTCATTGCCCAGTACTGATACATTATAGACTTAGCTTATGATCACTTTTTTCTATAGAATATGG
1 ATTCATTACCCAGTACTGACACATTATAGACTTAGCTCATGATCACCTTTCTCTATAGAACATGG
* *
10702018 AGAAGAAAGTGACAAAGTTATTTAAAGAATACACTTAAAGGTAAAAGGATATGGCTA-CTCAAAT
66 AGAAGAAAGTGACAAAGTCATTTAAAGAATACACTTAAAAGTAAAAGGATATGGC-AGCTCAAAT
* *
10702082 CCAACCACCTCTAATTGAGAA-AGAGACTATAGTGCTATTTGTGAGTACCATAAAAGTACCTTGT
130 CCAACCACCTCTAATTGAGAAGA-AGACTATAGTGCTATTTGTGAATACCATAAAAGCACCTTGT
*
10702146 TATGAGAAAATGATAGAAAATGTAACAAAAAACTTTGTTAATATGGTGATCTCAAGGAAGATTAT
194 TATGAGAAAATGATAGAAAATGTAACAAAAAACTTTATTAATATGGTGATCTCAAGGAAGATTAT
* * *
10702211 TGAAAATGCTATCAATAATGACAAATTTGAAAGAGAAGAG
259 TGAAAATGCTATCAAGAATGACAAACTTGAAAGAAAAGAG
10702251 CCCACTAGTA
Statistics
Matches: 269, Mismatches: 26, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
320 1 0.00
321 266 0.99
322 2 0.01
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (321 bp):
ATTCATTACCCAGTACTGACACATTATAGACTTAGCTCATGATCACCTTTCTCTATAGAACATGG
AGAAGAAAGTGACAAAGTCATTTAAAGAATACACTTAAAAGTAAAAGGATATGGCAGCTCAAATC
CAACCACCTCTAATTGAGAAGAAGACTATAGTGCTATTTGTGAATACCATAAAAGCACCTTGTTA
TGAGAAAATGATAGAAAATGTAACAAAAAACTTTATTAATATGGTGATCTCAAGGAAGATTATTG
AAAATGCTATCAAGAATGACAAACTTGAAAGAAAAGAGACACCAATATAAAGAAAAGAGGG
Found at i:10704178 original size:21 final size:21
Alignment explanation
Indices: 10704154--10704195 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
10704144 GGTTATGGTT
*
10704154 ATACCATCCAAACATTTATCC
1 ATACCATCCAAACACTTATCC
10704175 ATACCATCCAAACACTTATCC
1 ATACCATCCAAACACTTATCC
10704196 CACTAGTGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (21 bp):
ATACCATCCAAACACTTATCC
Found at i:10705194 original size:46 final size:46
Alignment explanation
Indices: 10705141--10705229 Score: 135
Period size: 46 Copynumber: 1.9 Consensus size: 46
10705131 CTTCAGACAT
*
10705141 AATCTCTAAAATTTTTT-GAATGAGAATCTTTGAAATCTTAGATTTA
1 AATCTCT-AAATTTTTTCAAATGAGAATCTTTGAAATCTTAGATTTA
* *
10705187 AATCTCTAAGTTTTTTCAAATGAGAATCTTTGAAATTTTAGAT
1 AATCTCTAAATTTTTTCAAATGAGAATCTTTGAAATCTTAGAT
10705230 GAATGAGTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
45 8 0.21
46 31 0.79
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.44
Consensus pattern (46 bp):
AATCTCTAAATTTTTTCAAATGAGAATCTTTGAAATCTTAGATTTA
Found at i:10705261 original size:17 final size:17
Alignment explanation
Indices: 10705241--10705279 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
10705231 AATGAGTTAC
*
10705241 GAATCTGAAAGTCCTGT
1 GAATCTAAAAGTCCTGT
* *
10705258 GAATCTAAAATTCTTGT
1 GAATCTAAAAGTCCTGT
10705275 GAATC
1 GAATC
10705280 CAAATATCTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (17 bp):
GAATCTAAAAGTCCTGT
Found at i:10706887 original size:3 final size:3
Alignment explanation
Indices: 10706881--10706916 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
10706871 ATAGTGGTTA
10706881 AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
10706917 AACCTTACCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:10707119 original size:36 final size:37
Alignment explanation
Indices: 10707035--10707141 Score: 128
Period size: 36 Copynumber: 2.9 Consensus size: 37
10707025 TAGTTTTCAT
* * *
10707035 AAAATCCTAACAACACT-TTAGAAGAAAATTTTGATAG
1 AAAATCCTACCAACA-TATTAGAAGATAATTTTGACAG
* *
10707072 AAAATCCTACCAACATATTGGAGGATAATTTTGACA-
1 AAAATCCTACCAACATATTAGAAGATAATTTTGACAG
* *
10707108 AAAATCTTACCAACATATTAGAAGATATTTTTGA
1 AAAATCCTACCAACATATTAGAAGATAATTTTGA
10707142 AAATCAATTG
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
36 31 0.52
37 29 0.48
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (37 bp):
AAAATCCTACCAACATATTAGAAGATAATTTTGACAG
Found at i:10708931 original size:19 final size:19
Alignment explanation
Indices: 10708907--10708959 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
10708897 ATCCAAGATT
10708907 TCAAAGATTCACAAAAAAC
1 TCAAAGATTCACAAAAAAC
* *
10708926 TCAAAG-TTGTA-AAAAAAT
1 TCAAAGATT-CACAAAAAAC
*
10708944 TCAAAAATTCACAAAA
1 TCAAAGATTCACAAAA
10708960 TAGATCAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
18 14 0.52
19 13 0.48
ACGTcount: A:0.58, C:0.15, G:0.06, T:0.21
Consensus pattern (19 bp):
TCAAAGATTCACAAAAAAC
Found at i:10709078 original size:21 final size:21
Alignment explanation
Indices: 10709040--10709079 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
10709030 TCAAGATTTA
* *
10709040 AAGATTCCCAAGAGTTAAAAG
1 AAGATTCACAAAAGTTAAAAG
*
10709061 AAGATTCACAAAATTTAAA
1 AAGATTCACAAAAGTTAAA
10709080 TATTTGCAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (21 bp):
AAGATTCACAAAAGTTAAAAG
Found at i:10709219 original size:36 final size:36
Alignment explanation
Indices: 10709146--10709221 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
10709136 ATTACAATCA
* *
10709146 TAAAGATTCACAAATAATTTCAAAGATTTGCTATTG
1 TAAAGATTCACAAATAACTTCAAAGATTCGCTATTG
* *
10709182 TAAAGATTCACAAATGACTTCAGAGATTCGC-ACTTG
1 TAAAGATTCACAAATAACTTCAAAGATTCGCTA-TTG
10709218 TAAA
1 TAAA
10709222 TATTAGAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 1 0.03
36 34 0.97
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (36 bp):
TAAAGATTCACAAATAACTTCAAAGATTCGCTATTG
Found at i:10709426 original size:22 final size:22
Alignment explanation
Indices: 10709398--10709471 Score: 60
Period size: 23 Copynumber: 3.3 Consensus size: 22
10709388 TCTCATGAGG
10709398 AAAATTTTAGGGATTCACATCC
1 AAAATTTTAGGGATTCACATCC
* * * *
10709420 AAAATTTCAAAGG-TTCTCATTCA
1 AAAATTT-TAGGGATTCACA-TCC
* *
10709443 AAAATCTTTAGAGATTTACATCC
1 AAAAT-TTTAGGGATTCACATCC
10709466 AAAATT
1 AAAATT
10709472 CAAAAAGTCT
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
22 13 0.34
23 19 0.50
24 6 0.16
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (22 bp):
AAAATTTTAGGGATTCACATCC
Found at i:10709453 original size:46 final size:44
Alignment explanation
Indices: 10709234--10709736 Score: 307
Period size: 46 Copynumber: 11.1 Consensus size: 44
10709224 TTAGAAATCG
* * ** *
10709234 ACATCCAAAATTCATAGATTGGCATTCAAAAAATTTTAGAGATTC
1 ACATCCAAAATTCAAAGGTTCTCATT-TAAAAATTTTAGAGATTC
** * * * **
10709279 ACATTGAAAATTCAAA-ATTTTAATTTGAAAAAATTTTAGAGATAG
1 ACATCCAAAATTCAAAGGTTCTCATTT--AAAAATTTTAGAGATTC
* * * * * *
10709324 AAATCCAAGATTCAAAGGTTCACATTTGAAAATCTTATAGATTC
1 ACATCCAAAATTCAAAGGTTCTCATTTAAAAATTTTAGAGATTC
* * * * * *
10709368 ACATACAAGATTTCAACGATTCTCA-TGAGGAAAATTTTAGGGATTC
1 ACATCCAA-AATTCAAAGGTTCTCATTTA--AAAATTTTAGAGATTC
* *
10709414 ACATCCAAAATTTCAAAGGTTCTCATTCAAAAATCTTTAGAGATTT
1 ACATCCAAAA-TTCAAAGGTTCTCATTTAAAAAT-TTTAGAGATTC
* ** *
10709460 ACATCCAAAATTCAAAAAG-TCTCATTTGAAATTTTTTAAAGA-TC
1 ACATCCAAAATTC-AAAGGTTCTCATTT-AAAAATTTTAGAGATTC
** * * * *
10709504 TACATTCCAAAATTCAAATATTCTCATTTGAAAATTTTTTAGTGGTTT
1 -ACA-TCCAAAATTCAAAGGTTCTCATTT-AAAA-ATTTTAGAGATTC
* *
10709552 ACATCCAAAATTC-AAGGATTCACATTTGAAAATTTTAGAGATTC
1 ACATCCAAAATTCAAAGG-TTCTCATTTAAAAATTTTAGAGATTC
* ** ** *
10709596 ACATCTAAAATTCAAATTTTCAAATTTGAAAAAATTTTAGAGGTTC
1 ACATCCAAAATTCAAAGGTTCTCATTT--AAAAATTTTAGAGATTC
* * * * * *
10709642 ACATCTAAAATTCAAAGATTCTTATTAGAAAAATTGTTAAAGGTTC
1 ACATCCAAAATTCAAAGGTTCTCATT-TAAAAATT-TTAGAGATTC
** *
10709688 ACATCCAAAATTCAAATATT-TACATTTAAAAATTTTAGAGATAC
1 ACATCCAAAATTCAAAGGTTCT-CATTTAAAAATTTTAGAGATTC
10709732 ACATC
1 ACATC
10709737 TAATGTTTAA
Statistics
Matches: 354, Mismatches: 81, Indels: 47
0.73 0.17 0.10
Matches are distributed among these distances:
44 67 0.19
45 102 0.29
46 172 0.49
47 12 0.03
48 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.35
Consensus pattern (44 bp):
ACATCCAAAATTCAAAGGTTCTCATTTAAAAATTTTAGAGATTC
Found at i:10709585 original size:22 final size:22
Alignment explanation
Indices: 10709552--10709662 Score: 66
Period size: 22 Copynumber: 5.0 Consensus size: 22
10709542 TTAGTGGTTT
*
10709552 ACATCCAAAATTCAAG-GATTC
1 ACATCTAAAATTCAAGAGATTC
* **
10709573 ACATTTGAAAATTTTAGAGATTC
1 ACATCT-AAAATTCAAGAGATTC
**
10709596 ACATCTAAAATTCAA-ATTTTC
1 ACATCTAAAATTCAAGAGATTC
* * ** *
10709617 AAATTTGAAAAAATTTTAGAGGTTC
1 ACATCT---AAAATTCAAGAGATTC
10709642 ACATCTAAAATTCAA-AGATTC
1 ACATCTAAAATTCAAGAGATTC
10709663 TTATTAGAAA
Statistics
Matches: 64, Mismatches: 20, Indels: 12
0.67 0.21 0.12
Matches are distributed among these distances:
21 17 0.27
22 22 0.34
23 10 0.16
24 7 0.11
25 8 0.12
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.33
Consensus pattern (22 bp):
ACATCTAAAATTCAAGAGATTC
Found at i:10709652 original size:90 final size:89
Alignment explanation
Indices: 10709256--10709762 Score: 353
Period size: 90 Copynumber: 5.6 Consensus size: 89
10709246 CATAGATTGG
* ** * *
10709256 CATTCAAAAAATTTTAGAGATTCACATTGAAAATTCAAA-ATTTTA-ATTTGAAAAAATTTTAGA
1 CATTTAAAAAATTTTAGAGATTCACATCCAAAATTCAAAGA-TTCACATTTG--AAAATTTTAAA
** * * **
10709319 GATAGAAATCCAAGATTCAAAGGTTCA
63 GATTCACATCCAAAATTCAAATTTTCA
* * * * * * * ** **
10709346 CATTT-GAAAATCTTATAGATTCACATACAAGATTTCAACGATTCTCATGAGGAAAATTTTAGGG
1 CATTTAAAAAATTTTAGAGATTCACATCCAA-AATTCAAAGATTCACAT-TTGAAAATTTTAAAG
** *
10709410 ATTCACATCCAAAATTTCAAAGGTTCT
64 ATTCACATCCAAAA-TTCAAATTTTCA
* * * * * *
10709437 CA-TTCAAAAATCTTTAGAGATTTACATCCAAAATTCAAAAAGTCTCATTTGAAATTTTTTAAAG
1 CATTTAAAAAAT-TTTAGAGATTCACATCCAAAATTCAAAGATTCACATTTGAAA-ATTTTAAAG
* *
10709501 A-TCTACATTCCAAAATTCAAATATTCT
64 ATTC-ACA-TCCAAAATTCAAATTTTCA
** * * * * *
10709528 CATTTGAAAATTTTTTAGTGGTTTACATCCAAAATTCAAGGATTCACATTTGAAAATTTTAGAGA
1 CATTT-AAAAAATTTTAGAGATTCACATCCAAAATTCAAAGATTCACATTTGAAAATTTTAAAGA
*
10709593 TTCACATCTAAAATTCAAATTTTCA
65 TTCACATCCAAAATTCAAATTTTCA
* * * ** *
10709618 AATTTGAAAAAATTTTAGAGGTTCACATCTAAAATTCAAAGATTCTTATTAGAAAAATTGTTAAA
1 CATTT-AAAAAATTTTAGAGATTCACATCCAAAATTCAAAGATTCACATTTG-AAAATT-TTAAA
*
10709683 GGTTCACATCCAAAATTCAAATATTT-A
63 GATTCACATCCAAAATTCAAAT-TTTCA
* * ** *
10709710 CATTT-AAAAATTTTAGAGATACACATCTAATGTTTAAAGATTCACATTTGAAA
1 CATTTAAAAAATTTTAGAGATTCACATCCAAAATTCAAAGATTCACATTTGAAA
10709763 CTCAAATATT
Statistics
Matches: 331, Mismatches: 70, Indels: 33
0.76 0.16 0.08
Matches are distributed among these distances:
89 23 0.07
90 136 0.41
91 73 0.22
92 92 0.28
93 7 0.02
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (89 bp):
CATTTAAAAAATTTTAGAGATTCACATCCAAAATTCAAAGATTCACATTTGAAAATTTTAAAGAT
TCACATCCAAAATTCAAATTTTCA
Found at i:10709755 original size:65 final size:65
Alignment explanation
Indices: 10709678--10709804 Score: 164
Period size: 65 Copynumber: 2.0 Consensus size: 65
10709668 AGAAAAATTG
* * * *
10709678 TTAAAGGTTCACATCCAAAATTCAAATATTTACATTTAAAAATTTTAGAGATACACATCTAATGT
1 TTAAAGATTCACATCCAAAACTCAAATATTTACATTTAAAAATTGTAAAGATACACATCTAATGT
*** * * *
10709743 TTAAAGATTCACATTTGAAACTCAAATATTTTCATTTAAAAATTGTAAAGATTCATATCTAA
1 TTAAAGATTCACATCCAAAACTCAAATATTTACATTTAAAAATTGTAAAGATACACATCTAA
10709805 AATTCAAAGA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
65 52 1.00
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (65 bp):
TTAAAGATTCACATCCAAAACTCAAATATTTACATTTAAAAATTGTAAAGATACACATCTAATGT
Found at i:10709759 original size:136 final size:136
Alignment explanation
Indices: 10709234--10709762 Score: 369
Period size: 136 Copynumber: 3.9 Consensus size: 136
10709224 TTAGAAATCG
* * ** * * **
10709234 ACATCCAAAATTCATAGATTGGCATTCA-AAAAATT-TTAGAGATTCACATTGAAAATTCAAA-A
1 ACATCTAAAATTCAAAGATTCTCATT-AGAAAAATTGTTAAAGGTTCACATCCAAAATTCAAAGA
* * * * * * * *
10709296 TTTTA-ATTTGAAAAAATTTTAGAGATAGAAATCCAAGATTCAAAGGTTCACATTTG--AAAATC
65 -TTCACATTT--AAAAATTTTAGAGATACACATCTAAAATTCAAAGATTCAAATTTGAAAAAATT
* *
10709358 TTATAGATTC
127 TTAGAGGTTC
* * * * *
10709368 ACATAC-AAGATTTCAACGATTCTCATGAGGAAAATT-TT-AGGGATTCACATCCAAAATTTCAA
1 ACAT-CTAA-AATTCAAAGATTCTCATTAGAAAAATTGTTAAAGG-TTCACATCCAAAA-TTCAA
* * * ** * * * ** **
10709430 AGGTTCTCATTCAAAAATCTTTAGAGATTTACATCCAAAATTCAAAAAGTCTCATTTG-AAATTT
62 AGATTCACATTTAAAAAT-TTTAGAGATACACATCTAAAATTCAAAGATTCAAATTTGAAAAAAT
* *
10709494 TTTA-AAGATC
126 TTTAGAGGTTC
* * * * * ** * *
10709504 TACATTCCAAAATTCAAATATTCTCATTTGAAAATTTTTTAGTGGTTTACATCCAAAATTCAAGG
1 -ACA-TCTAAAATTCAAAGATTCTCATTAGAAAAATTGTTAAAGGTTCACATCCAAAATTCAAAG
* * **
10709569 ATTCACATTTGAAAATTTTAGAGATTCACATCTAAAATTCAAATTTTCAAATTTGAAAAAATTTT
64 ATTCACATTTAAAAATTTTAGAGATACACATCTAAAATTCAAAGATTCAAATTTGAAAAAATTTT
10709634 AGAGGTTC
129 AGAGGTTC
* *
10709642 ACATCTAAAATTCAAAGATTCTTATTAGAAAAATTGTTAAAGGTTCACATCCAAAATTCAAATAT
1 ACATCTAAAATTCAAAGATTCTCATTAGAAAAATTGTTAAAGGTTCACATCCAAAATTCAAAGAT
* ** * *
10709707 TTACATTTAAAAATTTTAGAGATACACATCTAATGTTTAAAGATTCACATTTGAAA
66 TCACATTTAAAAATTTTAGAGATACACATCTAAAATTCAAAGATTCAAATTTGAAA
10709763 CTCAAATATT
Statistics
Matches: 303, Mismatches: 76, Indels: 30
0.74 0.19 0.07
Matches are distributed among these distances:
134 8 0.03
135 38 0.13
136 172 0.57
137 62 0.20
138 21 0.07
139 2 0.01
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (136 bp):
ACATCTAAAATTCAAAGATTCTCATTAGAAAAATTGTTAAAGGTTCACATCCAAAATTCAAAGAT
TCACATTTAAAAATTTTAGAGATACACATCTAAAATTCAAAGATTCAAATTTGAAAAAATTTTAG
AGGTTC
Found at i:10709793 original size:44 final size:45
Alignment explanation
Indices: 10709744--10709829 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 45
10709734 ATCTAATGTT
* * * *
10709744 TAAAGATTCACATTTGAAACTCAAATATTTTCATTT-AAAAATTG
1 TAAAGATTCACATCTAAAACTCAAAGATTTACATTTGAAAAATTG
* *
10709788 TAAAGATTCATATCTAAAATTCAAAGATTTACATTTGAAAAA
1 TAAAGATTCACATCTAAAACTCAAAGATTTACATTTGAAAAA
10709830 AATTCCTAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
44 30 0.86
45 5 0.14
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.36
Consensus pattern (45 bp):
TAAAGATTCACATCTAAAACTCAAAGATTTACATTTGAAAAATTG
Found at i:10709814 original size:65 final size:65
Alignment explanation
Indices: 10709699--10709827 Score: 177
Period size: 65 Copynumber: 2.0 Consensus size: 65
10709689 CATCCAAAAT
* * ** *
10709699 TCAAATATTTACATTTAAAAATTTTAGAGATACACATCTAATGTTTAAAGATTCACATTTGAAAC
1 TCAAATATTTACATTTAAAAATTGTAAAGATACACATCTAAAATTCAAAGATTCACATTTGAAAC
* * * *
10709764 TCAAATATTTTCATTTAAAAATTGTAAAGATTCATATCTAAAATTCAAAGATTTACATTTGAAA
1 TCAAATATTTACATTTAAAAATTGTAAAGATACACATCTAAAATTCAAAGATTCACATTTGAAA
10709828 AAAATTCCTA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (65 bp):
TCAAATATTTACATTTAAAAATTGTAAAGATACACATCTAAAATTCAAAGATTCACATTTGAAAC
Found at i:10709843 original size:26 final size:26
Alignment explanation
Indices: 10709803--10709874 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
10709793 ATTCATATCT
*
10709803 AAAATT-CAAAGATTTACATTTGAAA
1 AAAATTCCTAAGATTTACATTTGAAA
10709828 AAAATTCCTAAGATTTACATTTGAAA
1 AAAATTCCTAAGATTTACATTTGAAA
* * *
10709854 GAATTTCCTAAGATTCACATT
1 AAAATTCCTAAGATTTACATT
10709875 GTAGACATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 6 0.14
26 36 0.86
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.35
Consensus pattern (26 bp):
AAAATTCCTAAGATTTACATTTGAAA
Found at i:10714043 original size:19 final size:21
Alignment explanation
Indices: 10714000--10714043 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
10713990 CACTCAAATA
*
10714000 AAAGAAAAAAATTGTTAAAAG
1 AAAGAAAAAAATTGTGAAAAG
10714021 -AAGAAAAAAA-TG-GAAAAG
1 AAAGAAAAAAATTGTGAAAAG
10714039 AAAGA
1 AAAGA
10714044 GGAAGGACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.24
19 6 0.29
20 10 0.48
ACGTcount: A:0.70, C:0.00, G:0.18, T:0.11
Consensus pattern (21 bp):
AAAGAAAAAAATTGTGAAAAG
Found at i:10715569 original size:19 final size:19
Alignment explanation
Indices: 10715545--10715587 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
10715535 AAATTGAAAA
10715545 GAAATGAATTTTGCAAATG
1 GAAATGAATTTTGCAAATG
10715564 GAAATGAATTTTGCAAATG
1 GAAATGAATTTTGCAAATG
*
10715583 AAAAT
1 GAAAT
10715588 AGGGAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.47, C:0.05, G:0.19, T:0.30
Consensus pattern (19 bp):
GAAATGAATTTTGCAAATG
Found at i:10716753 original size:164 final size:164
Alignment explanation
Indices: 10716472--10716781 Score: 457
Period size: 164 Copynumber: 1.9 Consensus size: 164
10716462 AAACCTCTGG
* * *
10716472 GGCAAGATTCATAAGTCTTTCAAGCTAAACCTATTTTAGTATCAAGGTTCATAAGCACTTCAGGT
1 GGCAAGATTCATAAGTCTTTCAAGATAAACCTATTTTAGTATCAAGCTTCATAAGCACTTCAAGT
**
10716537 AGAATATTTTAAATTTCAAAGTTGTGAAACCTCTAATGAGAAGAGCATTCATAAGTGTTGAGATT
66 AGAATATTTTAAATTTCAAAGTTGTGAAACCTCTAATGAGAAGAGCATTCATAAGTGTCAAGATT
*
10716602 TGTAAGACCTTCAAGCTAGTCTCTAAGTCATCCA
131 TATAAGACCTTCAAGCTAGTCTCTAAGTCATCCA
* *
10716636 GGCAAGATTCATAAGTCTTTCAAGATGAATCTATTTTAGTATCAAGACTT-ATAAGTCA-TTCAA
1 GGCAAGATTCATAAGTCTTTCAAGATAAACCTATTTTAGTATCAAG-CTTCATAAG-CACTTCAA
* * *
10716699 GTAGAATATTTTAAATTTCAAAGTTGT-AAAGCCTTTAATGA-AAGAAGGATTCATAGGTGTCAA
64 GTAGAATATTTTAAATTTCAAAGTTGTGAAA-CCTCTAATGAGAAG-AGCATTCATAAGTGTCAA
10716762 GATTTATAAGACCTTCAAGC
127 GATTTATAAGACCTTCAAGC
10716782 ATAATTTTTA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
163 6 0.05
164 121 0.92
165 4 0.03
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.33
Consensus pattern (164 bp):
GGCAAGATTCATAAGTCTTTCAAGATAAACCTATTTTAGTATCAAGCTTCATAAGCACTTCAAGT
AGAATATTTTAAATTTCAAAGTTGTGAAACCTCTAATGAGAAGAGCATTCATAAGTGTCAAGATT
TATAAGACCTTCAAGCTAGTCTCTAAGTCATCCA
Found at i:10716913 original size:84 final size:83
Alignment explanation
Indices: 10716804--10717026 Score: 225
Period size: 83 Copynumber: 2.7 Consensus size: 83
10716794 TGCTTTAAAT
** * **
10716804 AAGATTCGTAAGTCTTCCAAGCTAAATCTATTTAAGTGTTGAGATTTGTAAAACCTCATAGTGTA
1 AAGATTCGTAAGTCTTCCAAGCTAAATCTATTTAAGTGTCAAGA-TTATAAAACCTCATAGCATA
*
10716869 ATATCTAAATTTTTTAGGA
65 ATATCTAAACTTTTTAGGA
* *** * * *
10716888 AAGATTCGTAAGTTTTTTTAGCTAAATTTATTTTAGTGTCAAGATTATAAAACCTCCTAGCATAA
1 AAGATTCGTAAGTCTTCCAAGCTAAATCTATTTAAGTGTCAAGATTATAAAACCTCATAGCATAA
*
10716953 TTTCTAAACTTTTT-GAGA
66 TATCTAAACTTTTTAG-GA
* * * * * *
10716971 ATG-TTCATAAGTATTCCAAGCTAAATTTATTTAAGTATCAAGATTTATAAGACCTC
1 AAGATTCGTAAGTCTTCCAAGCTAAATCTATTTAAGTGTCAAGA-TTATAAAACCTC
10717027 CAGGCAAATC
Statistics
Matches: 114, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
82 34 0.30
83 44 0.39
84 36 0.32
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (83 bp):
AAGATTCGTAAGTCTTCCAAGCTAAATCTATTTAAGTGTCAAGATTATAAAACCTCATAGCATAA
TATCTAAACTTTTTAGGA
Found at i:10717012 original size:82 final size:84
Alignment explanation
Indices: 10716755--10717043 Score: 241
Period size: 84 Copynumber: 3.5 Consensus size: 84
10716745 GGATTCATAG
* * * * * * * * *
10716755 GTGTCAAGATTTATAAGACCTTCAAGCATAATTTTTAAATGCTTT-A-AATAAGATTCGTAAGTC
1 GTGTCAAGATTTATAAAACCTCCTAGCATAATATCTAAAT-TTTTGAGGA-AAGATTCATAAGTA
*
10716818 TTCCAAGCTAAATCTATTTAA
64 TTCCAAGCTAAATTTATTTAA
** * * ** * * *
10716839 GTGTTGAGATTTGTAAAACCTCATAGTGTAATATCTAAATTTTTTAGGAAAGATTCGTAAGTTTT
1 GTGTCAAGATTTATAAAACCTCCTAGCATAATATCTAAATTTTTGAGGAAAGATTCATAAGTATT
*** *
10716904 TTTAGCTAAATTTATTTTA
66 CCAAGCTAAATTTATTTAA
* *
10716923 GTGTCAAGA-TTATAAAACCTCCTAGCATAATTTCTAAACTTTTTGA-GAATG-TTCATAAGTAT
1 GTGTCAAGATTTATAAAACCTCCTAGCATAATATCTAAA-TTTTTGAGGAAAGATTCATAAGTAT
10716985 TCCAAGCTAAATTTATTTAA
65 TCCAAGCTAAATTTATTTAA
* * *
10717005 GTATCAAGATTTATAAGACCTCC-AGGCA-AATCTCTAAAT
1 GTGTCAAGATTTATAAAACCTCCTA-GCATAATATCTAAAT
10717044 CCTCCATGCA
Statistics
Matches: 163, Mismatches: 37, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
81 1 0.01
82 43 0.26
83 46 0.28
84 72 0.44
85 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (84 bp):
GTGTCAAGATTTATAAAACCTCCTAGCATAATATCTAAATTTTTGAGGAAAGATTCATAAGTATT
CCAAGCTAAATTTATTTAA
Found at i:10717333 original size:46 final size:47
Alignment explanation
Indices: 10717274--10717381 Score: 125
Period size: 46 Copynumber: 2.3 Consensus size: 47
10717264 ATTGTGTTAC
* * *
10717274 ATTTTTAAAAAGTTGT-GCAGCCTCTAATGAGAAG-AGCATATAAATTT
1 ATTTTCAAAAAGTTATAG-AGCCTCTAATGA-AAGAAGCATATAAATAT
* *
10717321 A-TTTCAAAAAGTTATAGAGCCTCTAATGAAAGAAGCATTTAGATAT
1 ATTTTCAAAAAGTTATAGAGCCTCTAATGAAAGAAGCATATAAATAT
10717367 ATTTTCAAAAA-TTAT
1 ATTTTCAAAAAGTTAT
10717382 TAAGCCTTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
45 3 0.06
46 39 0.74
47 11 0.21
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (47 bp):
ATTTTCAAAAAGTTATAGAGCCTCTAATGAAAGAAGCATATAAATAT
Found at i:10717416 original size:46 final size:46
Alignment explanation
Indices: 10717366--10717517 Score: 200
Period size: 46 Copynumber: 3.3 Consensus size: 46
10717356 CATTTAGATA
* *
10717366 TATTTTCAAAAATTATTAAGCCTTTGTTTATAGGAGTTTTTAAATT
1 TATTTTCAAAAGTTATTAAGCCTTTATTTATAGGAGTTTTTAAATT
* * *
10717412 TATTTTCAAAAGTTATTGAGCCTTTAATGAT--GAGTTTTTAAATT
1 TATTTTCAAAAGTTATTAAGCCTTTATTTATAGGAGTTTTTAAATT
* * * *
10717456 TATTTTCAAAAGTTGTTAAACCTTTATTTAAAGGAGTTTTTACATT
1 TATTTTCAAAAGTTATTAAGCCTTTATTTATAGGAGTTTTTAAATT
*
10717502 CATTTTCAAAAGTTAT
1 TATTTTCAAAAGTTAT
10717518 GGAGTTTCAA
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
44 38 0.42
46 52 0.58
ACGTcount: A:0.33, C:0.08, G:0.11, T:0.48
Consensus pattern (46 bp):
TATTTTCAAAAGTTATTAAGCCTTTATTTATAGGAGTTTTTAAATT
Found at i:10717469 original size:22 final size:22
Alignment explanation
Indices: 10717444--10717515 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 22
10717434 TTTAATGATG
10717444 AGTTTTTAAATTTATTTTCAAA
1 AGTTTTTAAATTTATTTTCAAA
*
10717466 AGTTGTTAAACCTTTA-TTT-AAA
1 AGTTTTTAAA--TTTATTTTCAAA
* *
10717488 GGAGTTTTTACATTCATTTTCAAA
1 --AGTTTTTAAATTTATTTTCAAA
10717512 AGTT
1 AGTT
10717516 ATGGAGTTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
22 19 0.47
23 6 0.15
24 15 0.38
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (22 bp):
AGTTTTTAAATTTATTTTCAAA
Found at i:10722279 original size:58 final size:59
Alignment explanation
Indices: 10722152--10722318 Score: 237
Period size: 58 Copynumber: 2.8 Consensus size: 59
10722142 GTATGTTGAT
* *
10722152 GAAAGTTTAAAGCTTTACGTGTTTACTAGTTTGTTGCATGATGGTTGTTTGTGGGAAGG
1 GAAAGTTTAAAGCTTTACATGTTTACTAGTTTGTTGCATGATGGTTGTTTATGGGAAGG
* * * *
10722211 GAAAGGTTAAAGCTTTACATGTTTACTAGCTT-TTACATGATGGTTGTTTATGGGGAGG
1 GAAAGTTTAAAGCTTTACATGTTTACTAGTTTGTTGCATGATGGTTGTTTATGGGAAGG
* * * *
10722269 GAAAGTTTAAAGCATTACATGCTCACTAGTTTGTTGCATGATGTTTGTTT
1 GAAAGTTTAAAGCTTTACATGTTTACTAGTTTGTTGCATGATGGTTGTTT
10722319 GTAATGGGTA
Statistics
Matches: 94, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
58 50 0.53
59 44 0.47
ACGTcount: A:0.25, C:0.09, G:0.26, T:0.40
Consensus pattern (59 bp):
GAAAGTTTAAAGCTTTACATGTTTACTAGTTTGTTGCATGATGGTTGTTTATGGGAAGG
Found at i:10722362 original size:1 final size:1
Alignment explanation
Indices: 10722356--10722394 Score: 51
Period size: 1 Copynumber: 39.0 Consensus size: 1
10722346 AAGCGTTTAC
* * *
10722356 TTTTTTTTTGTTTTTGTTTTTGTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
10722395 GCAAAATGGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (1 bp):
T
Found at i:10724798 original size:43 final size:43
Alignment explanation
Indices: 10724714--10724798 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
10724704 CACATTTAAA
* **
10724714 ATTCAAATATTGTCATTTGAAAATTTTAGACATTCTTATCTAT
1 ATTCAAAAATTGTCATTTGAAAATTTTAGACATTCACATCTAT
* *
10724757 ATTCAAAAATTTTCATTTGAAAATTTTAGAGATTCACATCTA
1 ATTCAAAAATTGTCATTTGAAAATTTTAGACATTCACATCTA
10724799 AAAAAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.44
Consensus pattern (43 bp):
ATTCAAAAATTGTCATTTGAAAATTTTAGACATTCACATCTAT
Found at i:10725089 original size:39 final size:38
Alignment explanation
Indices: 10725046--10725125 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
10725036 GTTAAAGAAT
**
10725046 TTTCCTTATTCAATGATTTGAAATTGTATCTT-AAAAGGC
1 TTTCCTTATTCAA-GATTCAAAATTGTATCTTGAAAA-GC
**
10725085 TTTCCTTATTTGAGATTCAAAATTGTATCTTGAAAAGC
1 TTTCCTTATTCAAGATTCAAAATTGTATCTTGAAAAGC
10725123 TTT
1 TTT
10725126 TCTCATTTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
38 21 0.58
39 15 0.42
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (38 bp):
TTTCCTTATTCAAGATTCAAAATTGTATCTTGAAAAGC
Found at i:10726009 original size:25 final size:25
Alignment explanation
Indices: 10725962--10726011 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
10725952 GTTTTCTTTA
**
10725962 AAAGCACAATTCATTTTGGCACTCT
1 AAAGCACAATTCATTTTCACACTCT
*
10725987 AAAGCATAATTCATTTTCACACTCT
1 AAAGCACAATTCATTTTCACACTCT
10726012 TTGAAGTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (25 bp):
AAAGCACAATTCATTTTCACACTCT
Found at i:10726819 original size:23 final size:23
Alignment explanation
Indices: 10726793--10726842 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
10726783 TCAGAAAAAA
*
10726793 AAATTAAAAGGCTCAAAAGGGGT
1 AAATTAAAAGGCTCAAAAGGGCT
10726816 AAATTAAAAGGCTCAAAAGGGCT
1 AAATTAAAAGGCTCAAAAGGGCT
10726839 AAAT
1 AAAT
10726843 AAATGGGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.50, C:0.10, G:0.22, T:0.18
Consensus pattern (23 bp):
AAATTAAAAGGCTCAAAAGGGCT
Found at i:10730233 original size:28 final size:28
Alignment explanation
Indices: 10730179--10730237 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
10730169 TTTTTGTCCA
* * *
10730179 AAATAAAATAATAAATCAATAATAATCT
1 AAATAAAATAATAAATAAAAAAAAATCT
10730207 AAATAAAATAA-AAATAAGAAAAAAATCT
1 AAATAAAATAATAAATAA-AAAAAAATCT
10730235 AAA
1 AAA
10730238 ATCTAAAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (28 bp):
AAATAAAATAATAAATAAAAAAAAATCT
Found at i:10731148 original size:3 final size:3
Alignment explanation
Indices: 10731140--10731188 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
10731130 AAATTAGGTG
10731140 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10731188 A
1 A
10731189 AAGAGGTTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10731443 original size:12 final size:12
Alignment explanation
Indices: 10731426--10731486 Score: 68
Period size: 12 Copynumber: 4.8 Consensus size: 12
10731416 CAAAAAGTGT
10731426 GAAAATTTTTTG
1 GAAAATTTTTTG
*
10731438 GAAAATTTTTGG
1 GAAAATTTTTTG
*
10731450 TGAAAATTTTTTTTT
1 -GAAAA--TTTTTTG
*
10731465 GAAAATTTTTTA
1 GAAAATTTTTTG
10731477 GAAAATTTTT
1 GAAAATTTTT
10731487 AGTTTCCGAC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
12 27 0.64
13 5 0.12
14 5 0.12
15 5 0.12
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.52
Consensus pattern (12 bp):
GAAAATTTTTTG
Found at i:10731467 original size:14 final size:14
Alignment explanation
Indices: 10731431--10731475 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
10731421 AGTGTGAAAA
*
10731431 TTTTTTGGAAAA-T
1 TTTTTTTGAAAATT
**
10731444 TTTTGGTGAAAATT
1 TTTTTTTGAAAATT
10731458 TTTTTTTGAAAATT
1 TTTTTTTGAAAATT
10731472 TTTT
1 TTTT
10731476 AGAAAATTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
13 9 0.35
14 17 0.65
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (14 bp):
TTTTTTTGAAAATT
Found at i:10731896 original size:5 final size:5
Alignment explanation
Indices: 10731886--10731925 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
10731876 ATTTTTTTGG
*
10731886 TATTT TATTT TATTT T-TGTT TATCT TATTT TATTT TATTT
1 TATTT TATTT TATTT TAT-TT TATTT TATTT TATTT TATTT
10731926 GTTTATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 1 0.03
5 29 0.94
6 1 0.03
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:10731914 original size:25 final size:22
Alignment explanation
Indices: 10731886--10731938 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 22
10731876 ATTTTTTTGG
10731886 TATTTTATTTTATTTTTGTTTATCT
1 TATTTTATTTTA--TTTGTTTAT-T
10731911 TATTTTATTTTATTTGTTTATT
1 TATTTTATTTTATTTGTTTATT
10731933 TATTTT
1 TATTTT
10731939 CTTAAAGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 7 0.25
23 9 0.32
25 12 0.43
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (22 bp):
TATTTTATTTTATTTGTTTATT
Found at i:10731942 original size:30 final size:30
Alignment explanation
Indices: 10731886--10731942 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
10731876 ATTTTTTTGG
*
10731886 TATTTTATTTTATTTTTGTTTATCTTATTT
1 TATTTTATTTTATTTTTATTTATCTTATTT
10731916 TATTTTATTTGT-TTATTTATTT-TCTTA
1 TATTTTATTT-TATT-TTTATTTATCTTA
10731943 AAGTATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 17 0.71
31 7 0.29
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (30 bp):
TATTTTATTTTATTTTTATTTATCTTATTT
Found at i:10732002 original size:18 final size:17
Alignment explanation
Indices: 10731971--10732004 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
10731961 AAATTTTATA
*
10731971 AAAAATTAAGAAAATAT
1 AAAAATTAAAAAAATAT
10731988 AAAAATATAAAAAAATA
1 AAAAAT-TAAAAAAATA
10732005 AATTTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAAATTAAAAAAATAT
Found at i:10736626 original size:9 final size:9
Alignment explanation
Indices: 10736612--10736879 Score: 145
Period size: 9 Copynumber: 29.7 Consensus size: 9
10736602 TGAATATTGA
10736612 AAAAAAATG
1 AAAAAAATG
10736621 AAAAAAAT-
1 AAAAAAATG
10736629 -AAAAAAT-
1 AAAAAAATG
10736636 AAAGAAGAATG
1 AAA-AA-AATG
*
10736647 -AAGAAA-G
1 AAAAAAATG
10736654 AAAAAAATTG
1 AAAAAAA-TG
*
10736664 AAAAAATTG
1 AAAAAAATG
*
10736673 AAAAAATTG
1 AAAAAAATG
*
10736682 AAAAAATTG
1 AAAAAAATG
10736691 AAAAAAAAT-
1 -AAAAAAATG
10736700 AAAGAAAATAAAG
1 AAA-AAAAT---G
10736713 AAAATAAATG
1 AAAA-AAATG
*
10736723 AAATAAATG
1 AAAAAAATG
10736732 -AAAAAATG
1 AAAAAAATG
10736740 -AAAAAAT-
1 AAAAAAATG
10736747 AAAAAAATG
1 AAAAAAATG
10736756 AAAAAGAATG
1 AAAAA-AATG
*
10736766 -AAGAAAT-
1 AAAAAAATG
10736773 -AAAAAATG
1 AAAAAAATG
10736781 AAAAAAATTG
1 AAAAAAA-TG
10736791 AAAATAAA-G
1 AAAA-AAATG
*
10736800 AAAAAAA-A
1 AAAAAAATG
10736808 AAAGAAAAGTGTG
1 AAA-AAAA---TG
***
10736821 AAAAGTGTG
1 AAAAAAATG
* *
10736830 AAAATAGTG
1 AAAAAAATG
*
10736839 AAAAACATG
1 AAAAAAATG
*
10736848 AAAAACATG
1 AAAAAAATG
10736857 --AAAAATGG
1 AAAAAAAT-G
10736865 AAAAAAATG
1 AAAAAAATG
10736874 AAAAAA
1 AAAAAA
10736880 GAAAGAAAAG
Statistics
Matches: 211, Mismatches: 19, Indels: 58
0.73 0.07 0.20
Matches are distributed among these distances:
7 19 0.09
8 43 0.20
9 95 0.45
10 39 0.18
11 3 0.01
12 2 0.01
13 10 0.05
ACGTcount: A:0.72, C:0.01, G:0.13, T:0.14
Consensus pattern (9 bp):
AAAAAAATG
Found at i:10736704 original size:50 final size:47
Alignment explanation
Indices: 10736650--10736815 Score: 153
Period size: 50 Copynumber: 3.4 Consensus size: 47
10736640 AAGAATGAAG
*
10736650 AAAGAAAAAAATTGAAAAAATTGAAAAAATTGAAAAAATTGAAAAAAAAT
1 AAAGAAAAAAA-TGAAAAAA-TGAAAAAA-TGAAAAAATTGAAAAAAAAA
10736700 AAAGAAAATAAA-GAAAATAAATGAAATAAATGAAAAAA-TGAAAAAATAAAA
1 AAAGAAAA-AAATG-AAA-AAATGAAA-AAATGAAAAAATTG-AAAAA-AAAA
* *
10736751 AAATGAAAAAGAATGAAGAAAT-AAAAAATGAAAAAAATTGAAAATAAAGA
1 AAA-GAAAAA-AATGAAAAAATGAAAAAATG-AAAAAATTGAAAA-AAAAA
10736801 AAA-AAAAAAA-GAAAA
1 AAAGAAAAAAATGAAAA
10736816 GTGTGAAAAG
Statistics
Matches: 100, Mismatches: 4, Indels: 28
0.76 0.03 0.21
Matches are distributed among these distances:
46 4 0.04
47 2 0.02
48 5 0.05
49 8 0.08
50 48 0.48
51 23 0.23
52 9 0.09
53 1 0.01
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (47 bp):
AAAGAAAAAAATGAAAAAATGAAAAAATGAAAAAATTGAAAAAAAAA
Found at i:10736835 original size:108 final size:110
Alignment explanation
Indices: 10736604--10736878 Score: 263
Period size: 108 Copynumber: 2.5 Consensus size: 110
10736594 ATAATGGATG
* *
10736604 AATATTGAAAAAAAATGAAAAAAAT-AAAAAATAAAGAAGAATGAAGAAAGAA--AAAAATTGAA
1 AATAATGAAAATAAATG-AAAAAATGAAAAAATAAA-AA-AATGAA-AAAGAATGAAAAATTGAA
*
10736666 AAAATTGAAAAAATTGAAAAAATTGAAAAAAAATAAAGAAAATAAAGAA
62 AAAATTGAAAAAATTGAAAAAATAGAAAAAAAATAAAGAAAATAAAGAA
10736715 AATAAATG-AAATAAATGAAAAAATGAAAAAATAAAAAAATGAAAAAGAATGAAGAAA-T-AAAA
1 AAT-AATGAAAATAAATGAAAAAATGAAAAAATAAAAAAATGAAAAAGAATGAA-AAATTGAAAA
**
10736777 AA-TGAAAAAAATTGAAAATAA-AGAAAAAAAA-AAAGAAAAGT-GTGAA
64 AATTG-AAAAAATTGAAAA-AATAGAAAAAAAATAAAGAAAA-TAAAGAA
* * *
10736823 AAGT-GTGAAAAT-AGTGAAAAACATGAAAAACAT-GAAAAATGGAAAAA-AATGAAAAA
1 AA-TAATGAAAATAAATGAAAAA-ATGAAAAA-ATAAAAAAAT-GAAAAAGAATGAAAAA
10736879 AGAAAGAAAA
Statistics
Matches: 143, Mismatches: 8, Indels: 30
0.79 0.04 0.17
Matches are distributed among these distances:
107 13 0.09
108 45 0.31
109 44 0.31
110 14 0.10
111 24 0.17
112 3 0.02
ACGTcount: A:0.71, C:0.01, G:0.13, T:0.15
Consensus pattern (110 bp):
AATAATGAAAATAAATGAAAAAATGAAAAAATAAAAAAATGAAAAAGAATGAAAAATTGAAAAAA
TTGAAAAAATTGAAAAAATAGAAAAAAAATAAAGAAAATAAAGAA
Found at i:10736888 original size:17 final size:17
Alignment explanation
Indices: 10736614--10736892 Score: 95
Period size: 17 Copynumber: 16.2 Consensus size: 17
10736604 AATATTGAAA
*
10736614 AAAAAT-GAAAAAAATA
1 AAAAATAGAAAAAAATG
*
10736630 AAAAATA-AAGAAGAATG
1 AAAAATAGAA-AAAAATG
*
10736647 AAGAA-AGAAAAAAATTG
1 AAAAATAGAAAAAAA-TG
* *
10736664 AAAAAATTGAAAAAATTG
1 -AAAAATAGAAAAAAATG
*
10736682 AAAAAATTGAAAAAAAATAAAG
1 -AAAAATAG-AAAAAAAT---G
*
10736704 AAAATAAAGAAAATAAATG
1 AAAA-ATAGAAAA-AAATG
10736723 AAATAA-ATG-AAAAAATG
1 AAA-AATA-GAAAAAAATG
*
10736740 AAAAA-ATAAAAAAATG
1 AAAAATAGAAAAAAATG
*
10736756 -AAAA-AGAATGAAGAAATA
1 AAAAATAGAA--AA-AAATG
10736774 AAAAAT-GAAAAAAATTG
1 AAAAATAGAAAAAAA-TG
10736791 -AAAATA-AAGAAAAA--
1 AAAAATAGAA-AAAAATG
***
10736805 AAAAA-AGAAAAGTGTG
1 AAAAATAGAAAAAAATG
* * * *
10736821 AAAAGTGTGAAAATAGTG
1 AAAAAT-AGAAAAAAATG
* *
10736839 AAAAACATGAAAAACATG
1 AAAAATA-GAAAAAAATG
*
10736857 AAAAATGGAAAAAAATG
1 AAAAATAGAAAAAAATG
10736874 AAAAA-AGAAAGAAAA-G
1 AAAAATAGAAA-AAAATG
10736890 AAA
1 AAA
10736893 TACTCAAATT
Statistics
Matches: 201, Mismatches: 31, Indels: 62
0.68 0.11 0.21
Matches are distributed among these distances:
14 3 0.01
15 13 0.06
16 46 0.23
17 49 0.24
18 47 0.23
19 27 0.13
20 1 0.00
21 8 0.04
22 7 0.03
ACGTcount: A:0.72, C:0.01, G:0.14, T:0.13
Consensus pattern (17 bp):
AAAAATAGAAAAAAATG
Found at i:10738403 original size:43 final size:43
Alignment explanation
Indices: 10738317--10738870 Score: 465
Period size: 43 Copynumber: 12.8 Consensus size: 43
10738307 ATCTATGATT
* *
10738317 CCTCTTATTAG-AGAAGCTTTTGTTTATTTTTCAAAGTTGTTAAG
1 CCTCTAATTAGAAG-AGC-TTTATTTATTTTTCAAAGTTGTTAAG
*
10738361 CCTCTAATTAGAAGAGCTTTATTTATTTTTCAAAGTTATTAAG
1 CCTCTAATTAGAAGAGCTTTATTTATTTTTCAAAGTTGTTAAG
* * *
10738404 CCTTTAATTATAAGAGCTTTATTTAGTTTTCAAAGTTGTTAAG
1 CCTCTAATTAGAAGAGCTTTATTTATTTTTCAAAGTTGTTAAG
* ** *
10738447 CCTCTTATTAGAAGAGCTTTAGATATTTTTCAAAGTTGTTGAG
1 CCTCTAATTAGAAGAGCTTTATTTATTTTTCAAAGTTGTTAAG
* * * * *
10738490 TCTCTAATTATATGAGCTTTAGTTATTTTTCAAAGTTGTTAGG
1 CCTCTAATTAGAAGAGCTTTATTTATTTTTCAAAGTTGTTAAG
* * * *
10738533 CCTCTGATTA-AAGGAGCTTTATTCATTTTCCAAAGTTGTTGAG
1 CCTCTAATTAGAA-GAGCTTTATTTATTTTTCAAAGTTGTTAAG
* * * *
10738576 CC-ATGATTAGATA-AGCTTTATTTATTTTTAAAAGTTATTAAG
1 CCTCTAATTAGA-AGAGCTTTATTTATTTTTCAAAGTTGTTAAG
* * * * * * *
10738618 TCTTTATTTAGAGGAGCTTTATTTATTTTTTTAAAGTCGTTGAG
1 CCTCTAATTAGAAGAGCTTTATTTA-TTTTTCAAAGTTGTTAAG
* ** *
10738662 CCTTTGTTTA-AAGGAGCTTTATTTA-TTTTCTAGAAGTTGTTGAG
1 CCTCTAATTAGAA-GAGCTTTATTTATTTTTC-A-AAGTTGTTAAG
* * * * *
10738706 CCTCTTATTAGAGGAGCTTTATTTACTTTTTTTAAAATTGTTGAG
1 CCTCTAATTAGAAGAGCTTTATTTA--TTTTTCAAAGTTGTTAAG
** * **
10738751 CCTCTGTTTAGAAGAGCTTTGTTTATTTTTCATAAGTCATTAAG
1 CCTCTAATTAGAAGAGCTTTATTTATTTTTCA-AAGTTGTTAAG
* * * * *
10738795 CCTCTATTTAGATGAGCATTATTTATTTTTTAAAG-TATTAAG
1 CCTCTAATTAGAAGAGCTTTATTTATTTTTCAAAGTTGTTAAG
* ** * * *
10738837 CCTTTGTTTAGAGGAACCTTATTTATTTTTCAAA
1 CCTCTAATTAGAAGAGCTTTATTTATTTTTCAAA
10738871 AGTTATGAGC
Statistics
Matches: 419, Mismatches: 76, Indels: 32
0.80 0.14 0.06
Matches are distributed among these distances:
42 70 0.17
43 199 0.47
44 111 0.26
45 34 0.08
46 1 0.00
47 4 0.01
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (43 bp):
CCTCTAATTAGAAGAGCTTTATTTATTTTTCAAAGTTGTTAAG
Found at i:10739150 original size:4 final size:4
Alignment explanation
Indices: 10739141--10739174 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
10739131 TGTTTATTTG
10739141 TTAT TTAT TTAT TTAT TTAT TTA- TTATT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTA-T TTAT TT
10739175 CTTGGGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.11
4 22 0.79
5 3 0.11
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:10739158 original size:12 final size:11
Alignment explanation
Indices: 10739133--10739174 Score: 57
Period size: 12 Copynumber: 3.6 Consensus size: 11
10739123 TTATTTTATG
*
10739133 TTTATTTGTTA
1 TTTATTTATTA
10739144 TTTATTTATTTA
1 TTTATTTA-TTA
10739156 TTTATTTATTA
1 TTTATTTATTA
10739167 TTTTATTT
1 -TTTATTT
10739175 CTTGGGTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 10 0.36
12 18 0.64
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.76
Consensus pattern (11 bp):
TTTATTTATTA
Found at i:10739252 original size:23 final size:25
Alignment explanation
Indices: 10739195--10739253 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 25
10739185 ATCTTTTTTA
*
10739195 TTATTT-ATTGATTTGTTTTGCTAT
1 TTATTTGATTGATTTGTTTAGCTAT
*
10739219 TTATCTCTGATT-ATTTGTTTAG-TTT
1 TTAT-T-TGATTGATTTGTTTAGCTAT
10739244 TTATTTGATT
1 TTATTTGATT
10739254 TATCTTTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
23 5 0.17
24 5 0.17
25 7 0.23
26 10 0.33
27 3 0.10
ACGTcount: A:0.17, C:0.05, G:0.12, T:0.66
Consensus pattern (25 bp):
TTATTTGATTGATTTGTTTAGCTAT
Found at i:10739295 original size:3 final size:3
Alignment explanation
Indices: 10739287--10739335 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
10739277 AAATTAGGTG
10739287 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10739335 A
1 A
10739336 AGAGGTTAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10739798 original size:22 final size:21
Alignment explanation
Indices: 10739752--10739791 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
10739742 TTTATTTATA
*
10739752 GAGAGAGAAAGAGAGAAAAAT
1 GAGAGAGAAAGAGAAAAAAAT
10739773 GAGAG-GAAAGAGAAAAAAA
1 GAGAGAGAAAGAGAAAAAAA
10739792 ATTGAGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.03
Consensus pattern (21 bp):
GAGAGAGAAAGAGAAAAAAAT
Found at i:10740071 original size:5 final size:5
Alignment explanation
Indices: 10740063--10740100 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
10740053 GCCGAGCTGT
10740063 TTTTA TTTTA TTTTA TTTT- TGTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA T-TTTA TTTTA TTTTA TTT
10740101 CTTTGTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 1 0.03
5 29 0.94
6 1 0.03
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:10740089 original size:20 final size:22
Alignment explanation
Indices: 10740064--10740113 Score: 79
Period size: 20 Copynumber: 2.4 Consensus size: 22
10740054 CCGAGCTGTT
10740064 TTTATTTTATTTTA-TT-TTTG
1 TTTATTTTATTTTATTTCTTTG
10740084 TTTATTTTATTTTATTTCTTTG
1 TTTATTTTATTTTATTTCTTTG
10740106 TTT-TTTTA
1 TTTATTTTA
10740114 AGTATTTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.50
21 7 0.25
22 7 0.25
ACGTcount: A:0.14, C:0.02, G:0.04, T:0.80
Consensus pattern (22 bp):
TTTATTTTATTTTATTTCTTTG
Found at i:10740790 original size:8 final size:8
Alignment explanation
Indices: 10740773--10740807 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
10740763 ATATATTTTC
10740773 AATA-AAA
1 AATATAAA
10740780 AATATAAA
1 AATATAAA
10740788 AATATAAA
1 AATATAAA
10740796 AATATAAA
1 AATATAAA
10740804 AATA
1 AATA
10740808 ATTAAATCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 4 0.15
8 23 0.85
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AATATAAA
Found at i:10742797 original size:17 final size:16
Alignment explanation
Indices: 10742763--10742813 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
10742753 TGAAAATTTG
10742763 ATAAAAAATA-AATT-
1 ATAAAAAATATAATTA
10742777 ATAAAATAATATAATTA
1 ATAAAA-AATATAATTA
*
10742794 ATAAAAGATTATAA-TA
1 ATAAAA-AATATAATTA
10742810 ATAA
1 ATAA
10742814 TTTAACTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 6 0.19
15 4 0.12
16 10 0.31
17 12 0.38
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (16 bp):
ATAAAAAATATAATTA
Found at i:10743550 original size:18 final size:18
Alignment explanation
Indices: 10743527--10743561 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10743517 CCTTAATAAC
*
10743527 ACACACACATATATATAT
1 ACACACACATACATATAT
10743545 ACACACACATACATATA
1 ACACACACATACATATA
10743562 AAGTTTGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (18 bp):
ACACACACATACATATAT
Found at i:10746395 original size:17 final size:19
Alignment explanation
Indices: 10746355--10746397 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
10746345 CATTTGATTC
*
10746355 TAATAAATATTTTATTATT
1 TAATAATTATTTTATTATT
*
10746374 AAATAATTA-TTT-TTATT
1 TAATAATTATTTTATTATT
10746391 TAATAAT
1 TAATAAT
10746398 ACATTTAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 11 0.52
18 3 0.14
19 7 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TAATAATTATTTTATTATT
Found at i:10746410 original size:13 final size:12
Alignment explanation
Indices: 10746388--10746436 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
10746378 AATTATTTTT
10746388 ATTT-AATAATA
1 ATTTAAATAATA
10746399 CATTTAAATAAT-
1 -ATTTAAATAATA
*
10746411 A-TAAAATAATA
1 ATTTAAATAATA
10746422 TATTTAAATAATA
1 -ATTTAAATAATA
10746435 AT
1 AT
10746437 GTATCTGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
10 8 0.26
11 1 0.03
12 7 0.23
13 15 0.48
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (12 bp):
ATTTAAATAATA
Found at i:10746550 original size:6 final size:6
Alignment explanation
Indices: 10746535--10746564 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
10746525 GAGAAAATAT
*
10746535 TTTTTG TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
10746565 GAAATAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:10759123 original size:32 final size:30
Alignment explanation
Indices: 10759029--10759148 Score: 109
Period size: 32 Copynumber: 3.8 Consensus size: 30
10759019 ATAAATCTAT
* * *
10759029 TTTTTAAAATAAAATGAAAATTTTTACATAA
1 TTTTTAAAATGATATG-AAATTTTTACTTAA
* * *
10759060 TATTTTAAAATGATATGGAGTTTTTATTTAA
1 T-TTTTAAAATGATATGAAATTTTTACTTAA
10759091 TTTCTTAAACA-GATATAGAAATTTTTACTTAA
1 TTT-TTAAA-ATGATAT-GAAATTTTTACTTAA
10759123 TTTTGTAAAATGATAT-ATAATTTTTA
1 TTTT-TAAAATGATATGA-AATTTTTA
10759149 AAAAATTATG
Statistics
Matches: 73, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
30 3 0.04
31 32 0.44
32 38 0.52
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.47
Consensus pattern (30 bp):
TTTTTAAAATGATATGAAATTTTTACTTAA
Found at i:10764369 original size:33 final size:33
Alignment explanation
Indices: 10764322--10764385 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
10764312 TAACTCCACT
*
10764322 AAGCATGATATTATCCATATCCATCATTCATCA
1 AAGCATGATATTATCAATATCCATCATTCATCA
*
10764355 AAGCATGATTTTATCAATATCCATCATTCAT
1 AAGCATGATATTATCAATATCCATCATTCAT
10764386 ATATGGAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (33 bp):
AAGCATGATATTATCAATATCCATCATTCATCA
Found at i:10766509 original size:27 final size:27
Alignment explanation
Indices: 10766471--10766526 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
10766461 AAATCAATGG
10766471 TTAGAAAGATGTATAAAACTAAAAAGT
1 TTAGAAAGATGTATAAAACTAAAAAGT
10766498 TTAGAAAGATGTATAAAACTAAAAAGT
1 TTAGAAAGATGTATAAAACTAAAAAGT
10766525 TT
1 TT
10766527 TACATTGATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.54, C:0.04, G:0.14, T:0.29
Consensus pattern (27 bp):
TTAGAAAGATGTATAAAACTAAAAAGT
Found at i:10775077 original size:19 final size:20
Alignment explanation
Indices: 10775043--10775104 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
10775033 AGGGGCATGC
10775043 AAAGAAAAAAATAGAGGAAAA
1 AAAGAAAAAAATAGA-GAAAA
10775064 AAAG-AAAAAA-AGAGAAAA
1 AAAGAAAAAAATAGAGAAAA
*
10775082 AAGATGAAGAAAAT-GA-AAAA
1 AA-A-GAAAAAAATAGAGAAAA
10775102 AAA
1 AAA
10775105 TTATTGTGAC
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
18 7 0.19
19 5 0.14
20 13 0.36
21 11 0.31
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (20 bp):
AAAGAAAAAAATAGAGAAAA
Found at i:10775594 original size:19 final size:20
Alignment explanation
Indices: 10775554--10775603 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 20
10775544 CCACTCAAAG
*
10775554 AAAAGAAAAA-AAGTGAACA
1 AAAAAAAAAATAAGTGAACA
10775573 AAATAAAAAAATAAG-GAA-A
1 AAA-AAAAAAATAAGTGAACA
10775592 AAAAAAGAAAAT
1 AAAAAA-AAAAT
10775604 GAAAAAAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 3 0.11
19 12 0.44
20 9 0.33
21 3 0.11
ACGTcount: A:0.78, C:0.02, G:0.12, T:0.08
Consensus pattern (20 bp):
AAAAAAAAAATAAGTGAACA
Found at i:10775601 original size:45 final size:43
Alignment explanation
Indices: 10775550--10775651 Score: 118
Period size: 46 Copynumber: 2.3 Consensus size: 43
10775540 GAATCCACTC
10775550 AAAGAAAAGAAAAAAAGTGAACAA-AATAAAAAAATAAGGAAAAAA
1 AAAGAAAAGAAAAAAA-TGAACAACAATAAAAAAATAA--AAAAAA
* * * *
10775595 AAAGAAAATGAAAAAAATGAATAACCATAAAAAAATTAAAAAAG
1 AAAGAAAA-GAAAAAAATGAACAACAATAAAAAAATAAAAAAAA
10775639 AAAGAAAA-AAAAA
1 AAAGAAAAGAAAAA
10775652 CAAGAAAAAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
42 5 0.10
44 13 0.25
45 14 0.27
46 19 0.37
ACGTcount: A:0.77, C:0.03, G:0.11, T:0.09
Consensus pattern (43 bp):
AAAGAAAAGAAAAAAATGAACAACAATAAAAAAATAAAAAAAA
Found at i:10777774 original size:40 final size:40
Alignment explanation
Indices: 10777730--10778146 Score: 213
Period size: 40 Copynumber: 10.4 Consensus size: 40
10777720 ACCTCCGGGC
* *
10777730 AAAACTTTTAATTTTTGAATGAATTCCAAGGCCTTTAGGT
1 AAAACTTTAAATTTTTGAATGAATTCCAAGACCTTTAGGT
* ** * *
10777770 AAAACTTTAAATTTTTGAATAAATTATAAGACTTTTAGGC
1 AAAACTTTAAATTTTTGAATGAATTCCAAGACCTTTAGGT
* * * * * * *
10777810 AAAACCTTCAATTTTTTACTGATTTTCAAGACCTTTAGGC
1 AAAACTTTAAATTTTTGAATGAATTCCAAGACCTTTAGGT
* * * * * *
10777850 AAAACTTCATATTTTTTAAT-AATTTTCAAGACCTCTGGGT
1 AAAACTTTAAATTTTTGAATGAA-TTCCAAGACCTTTAGGT
* * *
10777890 AAAATCTTTAGATCTTTGAATGAATTCCAAGA-CTTTCAAGT
1 AAAA-CTTTAAATTTTTGAATGAATTCCAAGACCTTT-AGGT
* * * *
10777931 AAAACCTTAAATTTTTGAAT-AATTTTCAAGA-CTTATGGGC
1 AAAACTTTAAATTTTTGAATGAA-TTCCAAGACCTT-TAGGT
* * * * * * * *
10777971 AAAATTGTTAGATTTTTTAATGATTTTCAAGACTTTTGGGC
1 AAAACT-TTAAATTTTTGAATGAATTCCAAGACCTTTAGGT
* * ** *
10778012 AAAA-TCTTAGATTTTTGAAT-AATTTCCAAGATCTCCAAGT
1 AAAACT-TTAAATTTTTGAATGAA-TTCCAAGACCTTTAGGT
* * * *
10778052 AAAACCTTAGATTTTTGAA-CAATTTCCAAGACCTTTGGGT
1 AAAACTTTAAATTTTTGAATGAA-TTCCAAGACCTTTAGGT
* * * * *
10778092 AAAAAC-TCATATTTTTGAA-CAATTTCCAATACCTTTGGGT
1 -AAAACTTTAAATTTTTGAATGAA-TTCCAAGACCTTTAGGT
* *
10778132 AGAATTTTAAATTTT
1 AAAACTTTAAATTTT
10778147 CACAAACCTT
Statistics
Matches: 293, Mismatches: 70, Indels: 28
0.75 0.18 0.07
Matches are distributed among these distances:
39 7 0.02
40 221 0.75
41 60 0.20
42 5 0.02
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (40 bp):
AAAACTTTAAATTTTTGAATGAATTCCAAGACCTTTAGGT
Found at i:10777823 original size:120 final size:121
Alignment explanation
Indices: 10777685--10777959 Score: 281
Period size: 120 Copynumber: 2.3 Consensus size: 121
10777675 TTTAGACCTC
* *
10777685 TAGGTAAAACC-TCGAATTTTTTAACAATTTTCAAAACCTCCGGGCAAAACTT-TTAATTTTTGA
1 TAGGTAAAACCTTC-AATTTTTTAACAATTTTCAAAACCTCCAGGCAAAACTTCAT-ATTTTTGA
* * * *
10777748 ATGAA-TTCCAAGGCCTTTAGGTAAAA-CTTTAAATTTTTGAATAAATTATAAGACTTT
64 AT-AATTTCCAAGACCTCTAGGTAAAATCTTTAAATCTTTGAATAAATTACAAGACTTT
* * * ** *
10777805 TAGGCAAAACCTTCAATTTTTT-ACTGATTTTCAAGACCTTTAGGCAAAACTTCATATTTTTTAA
1 TAGGTAAAACCTTCAATTTTTTAAC-AATTTTCAAAACCTCCAGGCAAAACTTCATATTTTTGAA
* * * * *
10777869 TAATTTTCAAGACCTCTGGGTAAAATCTTTAGATCTTTGAATGAATTCCAAGACTTT
65 TAATTTCCAAGACCTCTAGGTAAAATCTTTAAATCTTTGAATAAATTACAAGACTTT
* * * * *
10777926 CAAGTAAAACCTTAAATTTTTGAATAATTTTCAA
1 TAGGTAAAACCTTCAATTTTTTAACAATTTTCAA
10777960 GACTTATGGG
Statistics
Matches: 125, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
119 4 0.03
120 66 0.53
121 54 0.43
122 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.39
Consensus pattern (121 bp):
TAGGTAAAACCTTCAATTTTTTAACAATTTTCAAAACCTCCAGGCAAAACTTCATATTTTTGAAT
AATTTCCAAGACCTCTAGGTAAAATCTTTAAATCTTTGAATAAATTACAAGACTTT
Found at i:10777944 original size:121 final size:120
Alignment explanation
Indices: 10777688--10778146 Score: 391
Period size: 121 Copynumber: 3.8 Consensus size: 120
10777678 AGACCTCTAG
* * * ** * *
10777688 GTAAAACCTCGAATTTTTTAAC-AATTTTCAAAACCTCCGGGCAAAACTT-TTAATTTTTGAATG
1 GTAAAACCT-TAAATTTTTAACTAATTTTCAAGACCTTTGGGCAAAACTTCAT-ATTTTTTAAT-
* * * * ** * *
10777751 AA-TTCCAAGGCCTTTAGGTAAAA-CTTTAAATTTTTGAATAAATTATAAGACTTTTAG
63 AATTTTCAAGACCTTTGGGTAAAATCTTTAGATTTTTGAAT-AATTCCAAGACTTTCAA
* * * * *
10777808 GCAAAACCTTCAATTTTTTACTGATTTTCAAGACCTTTAGGCAAAACTTCATATTTTTTAATAAT
1 GTAAAACCTTAAATTTTTAACTAATTTTCAAGACCTTTGGGCAAAACTTCATATTTTTTAATAAT
* *
10777873 TTTCAAGACCTCTGGGTAAAATCTTTAGATCTTTGAATGAATTCCAAGACTTTCAA
66 TTTCAAGACCTTTGGGTAAAATCTTTAGATTTTTGAAT-AATTCCAAGACTTTCAA
* * *
10777929 GTAAAACCTTAAATTTTTGAA-TAATTTTCAAGA-CTTATGGGCAAAATTGTTAGATTTTTTAAT
1 GTAAAACCTTAAATTTTT-AACTAATTTTCAAGACCTT-TGGGCAAAACT-TCATATTTTTTAAT
* * * *
10777992 GATTTTCAAGACTTTTGGGCAAAATC-TTAGATTTTTGAATAATTTCCAAGA-TCTCCAA
63 AATTTTCAAGACCTTTGGGTAAAATCTTTAGATTTTTGAATAA-TTCCAAGACT-TTCAA
* * * * *
10778050 GTAAAACCTTAGATTTTTGAAC-AATTTCCAAGACCTTTGGGTAAAAAC-TCATATTTTTGAACA
1 GTAAAACCTTAAATTTTT-AACTAATTTTCAAGACCTTTGGG-CAAAACTTCATATTTTTTAATA
* * * *
10778113 ATTTCCAATACCTTTGGGTAGAAT-TTTAAATTTT
64 ATTTTCAAGACCTTTGGGTAAAATCTTTAGATTTT
10778147 CACAAACCTT
Statistics
Matches: 274, Mismatches: 52, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
119 10 0.04
120 99 0.36
121 123 0.45
122 42 0.15
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (120 bp):
GTAAAACCTTAAATTTTTAACTAATTTTCAAGACCTTTGGGCAAAACTTCATATTTTTTAATAAT
TTTCAAGACCTTTGGGTAAAATCTTTAGATTTTTGAATAATTCCAAGACTTTCAA
Found at i:10777945 original size:81 final size:79
Alignment explanation
Indices: 10777685--10778130 Score: 292
Period size: 80 Copynumber: 5.6 Consensus size: 79
10777675 TTTAGACCTC
** * * * *
10777685 TAGGTAAAACCTCGAATTTTTTAACAATTTTCAAAACCTCCGGGCAAAA-CTTTTAATTTTTGAA
1 TAGGTAAAACCTTAAATTTTTGAATAATTTTCAAGACCTCTGGGCAAAATC-TTTAATTTTTGAA
*
10777749 TGAATTCCAAGGCCTT
65 TGAATTCCAA-GACTT
* * * * * * * * *
10777765 TAGGTAAAACTTTAAATTTTTGAATAAATTAT-AAGACTTTTAGGCAAAACCTTCAATTTTTTAC
1 TAGGTAAAACCTTAAATTTTTGAAT-AATTTTCAAGACCTCTGGGCAAAATCTTTAATTTTTGAA
* *
10777829 TGATTTTCAAGACCTT
65 TGAATTCCAAGA-CTT
* * * * *
10777845 TAGGCAAAA-CTTCATATTTTTTAATAATTTTCAAGACCTCTGGGTAAAATCTTTAGATCTTTGA
1 TAGGTAAAACCTT-AAATTTTTGAATAATTTTCAAGACCTCTGGGCAAAATCTTTA-ATTTTTGA
10777909 ATGAATTCCAAGACTT
64 ATGAATTCCAAGACTT
* * * *
10777925 TCAAGTAAAACCTTAAATTTTTGAATAATTTTCAAGACTTATGGGCAAAAT-TGTTAGATTTTTT
1 T-AGGTAAAACCTTAAATTTTTGAATAATTTTCAAGACCTCTGGGCAAAATCT-TTA-ATTTTTG
* *
10777989 AATGATTTTCAAGACTTT
63 AATGAATTCCAAGAC-TT
* * * * * * *** * *
10778007 TGGGCAAAATCTTAGATTTTTGAATAATTTCCAAGATCTCCAAGTAAAA-CCTTAGATTTTTGAA
1 TAGGTAAAACCTTAAATTTTTGAATAATTTTCAAGACCTCTGGGCAAAATCTTTA-ATTTTTGAA
*
10778071 -CAATTTCCAAGACCTT
65 TGAA-TTCCAAGA-CTT
* * * * * * * *
10778087 TGGGTAAAAACTCATATTTTTGAACAATTTCCAATACCTTTGGG
1 TAGGTAAAACCTTAAATTTTTGAATAATTTTCAAGACCTCTGGG
10778131 TAGAATTTTA
Statistics
Matches: 280, Mismatches: 73, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
79 9 0.03
80 147 0.52
81 118 0.42
82 6 0.02
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (79 bp):
TAGGTAAAACCTTAAATTTTTGAATAATTTTCAAGACCTCTGGGCAAAATCTTTAATTTTTGAAT
GAATTCCAAGACTT
Found at i:10778334 original size:62 final size:60
Alignment explanation
Indices: 10778229--10778457 Score: 197
Period size: 62 Copynumber: 3.7 Consensus size: 60
10778219 TGGTCATAGC
* * * * * *
10778229 CTCTAAGTTCTCCAGGCAAGATTCGTAAGTCTTTTGAGTTGAATCTATTCAAGTGCCGATAT
1 CTCTAAGTCCTCCA-ACAAGATTCGTAAGT-TTTTAAGCTGAATCTATTCGAGTGTCGATAT
* * * *
10778291 CTCTATGTCCTCCGAACAAGATTCGTAAGTTTTTCAAGCTGAATTTATTTGAGTGTCAATAT
1 CTCTAAGTCCTCC-AACAAGATTCGTAAGTTTTT-AAGCTGAATCTATTCGAGTGTCGATAT
* * * * * * *
10778353 CTCTAAGTTCTCCAGACAAGATCCCTAAGCTTTTTTAGCTAAATCTATTCGAGTTTTGATAT
1 CTCTAAGTCCTCCA-ACAAGATTCGTAAG-TTTTTAAGCTGAATCTATTCGAGTGTCGATAT
* ** *
10778415 CTCTAAGTCTTCCCAGTAAGATTCGTAAGTTTTTCAAGTTGAA
1 CTCTAAGTCCT-CCAACAAGATTCGTAAGTTTTT-AAGCTGAA
10778458 ATTTATAAGT
Statistics
Matches: 131, Mismatches: 30, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
61 10 0.08
62 112 0.85
63 9 0.07
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (60 bp):
CTCTAAGTCCTCCAACAAGATTCGTAAGTTTTTAAGCTGAATCTATTCGAGTGTCGATAT
Found at i:10778449 original size:124 final size:125
Alignment explanation
Indices: 10778229--10778463 Score: 303
Period size: 124 Copynumber: 1.9 Consensus size: 125
10778219 TGGTCATAGC
* * * * *
10778229 CTCTAAGTTCTCCAGGCAAGATTCGTAAGTCTTTTGAGTTGAATCTATTCAAGTGCCGATATCTC
1 CTCTAAGTTCTCCAGACAAGATCCCTAAGTCTTTTGAGCTAAATCTATTCAAGTGCCGATATCTC
* *
10778294 TATGTCCTCCGAACAAGATTCGTAAGTTTTTCAAGCTG-AATTTATTTGAGTGTCAATAT
66 TAAGTCCTCCCAACAAGATTCGTAAGTTTTTCAAGCTGAAATTTATTTGAGTGTCAATAT
* * ***
10778353 CTCTAAGTTCTCCAGACAAGATCCCTAAG-CTTTTTTAGCTAAATCTATTCGAGTTTTGATATCT
1 CTCTAAGTTCTCCAGACAAGATCCCTAAGTC-TTTTGAGCTAAATCTATTCAAGTGCCGATATCT
* ** *
10778417 CTAAGTCTTCCCAGTAAGATTCGTAAGTTTTTCAAGTTGAAATTTAT
65 CTAAGTCCTCCCAACAAGATTCGTAAGTTTTTCAAGCTGAAATTTAT
10778464 AAGTCCTCTA
Statistics
Matches: 93, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
123 1 0.01
124 85 0.91
125 7 0.08
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (125 bp):
CTCTAAGTTCTCCAGACAAGATCCCTAAGTCTTTTGAGCTAAATCTATTCAAGTGCCGATATCTC
TAAGTCCTCCCAACAAGATTCGTAAGTTTTTCAAGCTGAAATTTATTTGAGTGTCAATAT
Found at i:10781920 original size:19 final size:20
Alignment explanation
Indices: 10781896--10781967 Score: 64
Period size: 22 Copynumber: 3.8 Consensus size: 20
10781886 ATTTCTTTCA
10781896 ATTTTTA-AAAAATATTTTT
1 ATTTTTACAAAAATATTTTT
10781915 ATTTTTAACCAAAAATATTTTT
1 ATTTTT-A-CAAAAATATTTTT
*
10781937 -TTTTT--ATAAAT-TTTTT
1 ATTTTTACAAAAATATTTTT
* *
10781953 ATTGTTATAAAAATA
1 ATTTTTACAAAAATA
10781968 AAAAAAGAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
16 5 0.12
17 9 0.21
19 11 0.26
20 1 0.02
21 5 0.12
22 12 0.28
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (20 bp):
ATTTTTACAAAAATATTTTT
Found at i:10781949 original size:15 final size:17
Alignment explanation
Indices: 10781931--10781963 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
10781921 AACCAAAAAT
10781931 ATTTTTT-TT-TTATAA
1 ATTTTTTATTGTTATAA
10781946 ATTTTTTATTGTTATAA
1 ATTTTTTATTGTTATAA
10781963 A
1 A
10781964 AATAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 2 0.12
17 7 0.44
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (17 bp):
ATTTTTTATTGTTATAA
Found at i:10784545 original size:37 final size:42
Alignment explanation
Indices: 10784504--10784581 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
10784494 TAACATTTAT
*
10784504 TTTTTGAT-TTA-GAA-TTACTT-TTTAT-TTATAATAATAA
1 TTTTTGATATTATGAATTTAATTATTTATGTTATAATAATAA
*
10784541 TTTTTGATATTATTAATTTAATTATTTATGTTATAATAATA
1 TTTTTGATATTATGAATTTAATTATTTATGTTATAATAATA
10784582 TGTTTTTACA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
37 8 0.24
38 3 0.09
39 2 0.06
40 5 0.15
41 5 0.15
42 11 0.32
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.58
Consensus pattern (42 bp):
TTTTTGATATTATGAATTTAATTATTTATGTTATAATAATAA
Found at i:10784744 original size:23 final size:23
Alignment explanation
Indices: 10784717--10784762 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
10784707 ACGTAACCAC
*
10784717 TTATTTTTAA-AATGAATTATTTT
1 TTATTTATAATAAT-AATTATTTT
*
10784740 TTATTTATAATAATAATTCTTTT
1 TTATTTATAATAATAATTATTTT
10784763 ATGTTGTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (23 bp):
TTATTTATAATAATAATTATTTT
Found at i:10785211 original size:21 final size:22
Alignment explanation
Indices: 10785157--10785218 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 22
10785147 TATTTTGTAT
* *
10785157 TTAT-AATAATAATTCTTTATG
1 TTATCAATAATATTTATTTATG
10785178 TTATCAAGT--TATTTATTTATG
1 TTATCAA-TAATATTTATTTATG
*
10785199 TTA-CAATAATATTTTTTTAT
1 TTATCAATAATATTTATTTAT
10785219 ACTTATTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
19 1 0.03
20 3 0.09
21 27 0.79
22 2 0.06
23 1 0.03
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (22 bp):
TTATCAATAATATTTATTTATG
Found at i:10785386 original size:68 final size:68
Alignment explanation
Indices: 10785277--10785403 Score: 173
Period size: 68 Copynumber: 1.9 Consensus size: 68
10785267 GGATGTTATG
* * *
10785277 ACACTTTTAACTCATTTTATGCCAAATGATATCAATTTTATGACTATTTTCACATTTTTTACATT
1 ACACTTTTAACACATTTTACGCCAAATGATATCAATTTTATGACTATTCTCACATTTTTTACATT
10785342 ACC
66 ACC
** * * * *
10785345 ACACTTTTAACACATTTTACGTTAAATTATATTAATTTTATGATTATTCTCACCTTTTT
1 ACACTTTTAACACATTTTACGCCAAATGATATCAATTTTATGACTATTCTCACATTTTT
10785404 ATGTTAACAC
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
68 50 1.00
ACGTcount: A:0.31, C:0.17, G:0.04, T:0.48
Consensus pattern (68 bp):
ACACTTTTAACACATTTTACGCCAAATGATATCAATTTTATGACTATTCTCACATTTTTTACATT
ACC
Found at i:10787437 original size:3 final size:3
Alignment explanation
Indices: 10787409--10787537 Score: 86
Period size: 3 Copynumber: 41.0 Consensus size: 3
10787399 TTAATAAGCT
* * * *
10787409 TAA TAA TTAA AAA TATA TAC TAA TAA TAA TAA TAA TAA TAA TGA TAC
1 TAA TAA -TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10787456 TAA TAA TAA TAA TAA TAA -AA TACA TGGAA TAA T-A TGAGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A T--AA TAA TAA T-A-A TAA TAA
* *
10787501 TAAA TAA TGA TAA TAGA -AA TAA T-G TAGA TAA TAA TAA
1 T-AA TAA TAA TAA TA-A TAA TAA TAA TA-A TAA TAA TAA
10787538 ATATATAGAG
Statistics
Matches: 100, Mismatches: 12, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
2 6 0.06
3 74 0.74
4 15 0.15
5 4 0.04
6 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:10787546 original size:18 final size:18
Alignment explanation
Indices: 10787487--10787546 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
10787477 ACATGGAATA
10787487 ATATGAGATAATAATAAAT
1 ATAT-AGATAATAATAAAT
*
10787506 A-AT-GATAAT-AGAAAT
1 ATATAGATAATAATAAAT
*
10787521 AATGTAGATAATAATAAAT
1 -ATATAGATAATAATAAAT
10787540 ATATAGA
1 ATATAGA
10787547 GAATGTTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
15 5 0.15
16 7 0.21
17 1 0.03
18 14 0.42
19 6 0.18
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.30
Consensus pattern (18 bp):
ATATAGATAATAATAAAT
Found at i:10787711 original size:22 final size:22
Alignment explanation
Indices: 10787679--10787721 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
10787669 CATGTTGGGA
*
10787679 AATTATTAAATAATAAAAATAT
1 AATTATAAAATAATAAAAATAT
*
10787701 AATTATAAAATATTAAAAATA
1 AATTATAAAATAATAAAAATA
10787722 ATGATAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
AATTATAAAATAATAAAAATAT
Found at i:10788799 original size:14 final size:14
Alignment explanation
Indices: 10788738--10788867 Score: 74
Period size: 14 Copynumber: 9.6 Consensus size: 14
10788728 TTTGTAAGAG
10788738 ATTGAAACCTT-AA
1 ATTGAAACCTTAAA
*
10788751 ACTGAAATCC-TAAA
1 ATTGAAA-CCTTAAA
* *
10788765 ATT-AAAACTCAAA
1 ATTGAAACCTTAAA
** *
10788778 ATCAAAACTTTAAA
1 ATTGAAACCTTAAA
10788792 ATTGAAACCTT-AA
1 ATTGAAACCTTAAA
* *
10788805 ATTGAAACCCTAAC
1 ATTGAAACCTTAAA
*
10788819 ATTGAAACCCT-AA
1 ATTGAAACCTTAAA
* * *
10788832 A-TAAAACCCTAAG
1 ATTGAAACCTTAAA
* * *
10788845 GTTTAAGCCTTAAA
1 ATTGAAACCTTAAA
10788859 ATTGAAACC
1 ATTGAAACC
10788868 CTAAGGGGAA
Statistics
Matches: 86, Mismatches: 24, Indels: 13
0.70 0.20 0.11
Matches are distributed among these distances:
12 9 0.10
13 30 0.35
14 47 0.55
ACGTcount: A:0.48, C:0.19, G:0.07, T:0.25
Consensus pattern (14 bp):
ATTGAAACCTTAAA
Found at i:10788806 original size:27 final size:26
Alignment explanation
Indices: 10788738--10788843 Score: 86
Period size: 27 Copynumber: 4.0 Consensus size: 26
10788728 TTTGTAAGAG
* * *
10788738 ATTGAAACCTTAAACTGAAATCCTAAA
1 ATTGAAACCCTAAA-TAAAACCCTAAA
* * * **
10788765 ATTAAAACTCAAAATCAAAACTTTAAA
1 ATTGAAACCCTAAAT-AAAACCCTAAA
* * *
10788792 ATTGAAACCTTAAATTGAAACCCTAAC
1 ATTGAAACCCTAAA-TAAAACCCTAAA
10788819 ATTGAAACCCTAAATAAAACCCTAA
1 ATTGAAACCCTAAATAAAACCCTAA
10788844 GGTTTAAGCC
Statistics
Matches: 59, Mismatches: 18, Indels: 5
0.72 0.22 0.06
Matches are distributed among these distances:
26 11 0.19
27 47 0.80
28 1 0.02
ACGTcount: A:0.51, C:0.20, G:0.05, T:0.25
Consensus pattern (26 bp):
ATTGAAACCCTAAATAAAACCCTAAA
Found at i:10796216 original size:35 final size:35
Alignment explanation
Indices: 10796176--10796248 Score: 112
Period size: 35 Copynumber: 2.1 Consensus size: 35
10796166 TGTGTGTGTC
* *
10796176 TTTTAGCTCATAATTAGG-TCTCCACCTTGTAATTT
1 TTTTAGCTCATAATT-GGATCTCCAACGTGTAATTT
10796211 TTTTAGCTCATAATTGGATCTCCAACGTGTAATTT
1 TTTTAGCTCATAATTGGATCTCCAACGTGTAATTT
10796246 TTT
1 TTT
10796249 AATAATTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 2 0.06
35 33 0.94
ACGTcount: A:0.23, C:0.18, G:0.12, T:0.47
Consensus pattern (35 bp):
TTTTAGCTCATAATTGGATCTCCAACGTGTAATTT
Found at i:10801548 original size:25 final size:24
Alignment explanation
Indices: 10801526--10801575 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
10801516 TTGTAAAATT
10801526 TGTG-GAAAAACTAATAAATAAAAC
1 TGTGTGAAAAACTAA-AAATAAAAC
*
10801550 TGTGTGAAAAACTAAAAGTAAAAC
1 TGTGTGAAAAACTAAAAATAAAAC
10801574 TG
1 TG
10801576 AATGTATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.54, C:0.08, G:0.16, T:0.22
Consensus pattern (24 bp):
TGTGTGAAAAACTAAAAATAAAAC
Found at i:10801751 original size:23 final size:23
Alignment explanation
Indices: 10801718--10801761 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
10801708 TTTTTTGTCC
*
10801718 TAAATTTTAGGGATACAAATACT
1 TAAATTCTAGGGATACAAATACT
10801741 TAAATTCTAGGGATACAAATA
1 TAAATTCTAGGGATACAAATA
10801762 TAAATATACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (23 bp):
TAAATTCTAGGGATACAAATACT
Found at i:10805770 original size:22 final size:22
Alignment explanation
Indices: 10805745--10805788 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
10805735 ATTTTTTGTC
10805745 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGGGATACAAATA
*
10805767 CTTAATTTTAGGGATACAAATA
1 CTTAATTCTAGGGATACAAATA
10805789 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (22 bp):
CTTAATTCTAGGGATACAAATA
Found at i:10807423 original size:109 final size:109
Alignment explanation
Indices: 10807232--10807445 Score: 419
Period size: 109 Copynumber: 2.0 Consensus size: 109
10807222 CCTTGGTAAC
*
10807232 AACTGAGATCCTTAGCCAATTCTTAGAATTTGCATAAACAATTTTTAAAGCATCCCAAAGTTCTT
1 AACTGAGATCCTTAGCCAATTCTCAGAATTTGCATAAACAATTTTTAAAGCATCCCAAAGTTCTT
10807297 ACTTGTGAAGTATTTGATTGAACATGACCTTGACTCATCGATGG
66 ACTTGTGAAGTATTTGATTGAACATGACCTTGACTCATCGATGG
10807341 AACTGAGATCCTTAGCCAATTCTCAGAATTTGCATAAACAATTTTTAAAGCATCCCAAAGTTCTT
1 AACTGAGATCCTTAGCCAATTCTCAGAATTTGCATAAACAATTTTTAAAGCATCCCAAAGTTCTT
10807406 ACTTGTGAAGTATTTGATTGAACATGACCTTGACTCATCG
66 ACTTGTGAAGTATTTGATTGAACATGACCTTGACTCATCG
10807446 TTCCATCGAG
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 104 1.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (109 bp):
AACTGAGATCCTTAGCCAATTCTCAGAATTTGCATAAACAATTTTTAAAGCATCCCAAAGTTCTT
ACTTGTGAAGTATTTGATTGAACATGACCTTGACTCATCGATGG
Found at i:10815012 original size:117 final size:116
Alignment explanation
Indices: 10814930--10815146 Score: 278
Period size: 117 Copynumber: 1.9 Consensus size: 116
10814920 TTATGTTTGA
10814930 AAAATTATAAAAACATTT-TCAACACTTTTAGAATATTTCAAAAAA-TTCTTTTGTATGAATATT
1 AAAATTAT-AAAACATTTCT-AACACTTTTAGAATATTTCAAAAAATTTC-TTTGTATGAATATT
10814993 TTCAATAAAATCAACATTTGTGACATTATTATTATTAATAATTTTTTTATACTTG
63 TTCAATAAAATCAACATTTGTGACATTATTATTATTAATAA-TTTTTTATACTTG
* * * * * * *
10815048 AAAATTCTAAAATATTTCTAATACTTTTAGAATATTTTAGAAAATTTCTTTGTGTGAATATTTTT
1 AAAATTATAAAACATTTCTAACACTTTTAGAATATTTCAAAAAATTTCTTTGTATGAATATTTTC
* * *
10815113 AATAAAATC-ACAACTTGTGACATTGTTTTTATTA
66 AATAAAATCAAC-ATTTGTGACATTATTATTATTA
10815147 TTTTATTTAT
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
116 2 0.02
117 73 0.85
118 11 0.13
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.46
Consensus pattern (116 bp):
AAAATTATAAAACATTTCTAACACTTTTAGAATATTTCAAAAAATTTCTTTGTATGAATATTTTC
AATAAAATCAACATTTGTGACATTATTATTATTAATAATTTTTTATACTTG
Found at i:10815175 original size:28 final size:26
Alignment explanation
Indices: 10815135--10815186 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 26
10815125 ACTTGTGACA
10815135 TTGTTTTTATTATTTTATTTATTATTTT
1 TTGTTTTTATTATTTT-TTT-TTATTTT
10815163 TTGTCTTTT-TTATTTTTTTTTATT
1 TTGT-TTTTATTATTTTTTTTTATT
10815187 CTTGTTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 5 0.22
27 3 0.13
28 11 0.48
29 4 0.17
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.81
Consensus pattern (26 bp):
TTGTTTTTATTATTTTTTTTTATTTT
Found at i:10815397 original size:23 final size:21
Alignment explanation
Indices: 10815363--10815404 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
10815353 AAAAGTTTAT
10815363 ACAAAAATAAAATAAAATACC
1 ACAAAAATAAAATAAAATACC
10815384 ACAAAAATAAAAAATAAAATA
1 ACAAAAAT--AAAATAAAATA
10815405 ATAGAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.42
23 11 0.58
ACGTcount: A:0.76, C:0.10, G:0.00, T:0.14
Consensus pattern (21 bp):
ACAAAAATAAAATAAAATACC
Found at i:10817642 original size:43 final size:42
Alignment explanation
Indices: 10817546--10817644 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 42
10817536 AATGTCTTGA
*
10817546 ATGTCACCACCAAGAAAATGAAATTCAAGCTTTAATACTCAG
1 ATGTCACCACTAAGAAAATGAAATTCAAGCTTTAATACTCAG
* ** *
10817588 ATATCACCACTAA-AAAGATGAAATTCAGATTTTTAATACTCGG
1 ATGTCACCACTAAGAAA-ATGAAATTCA-AGCTTTAATACTCAG
*
10817631 ATGTCATCACTAAG
1 ATGTCACCACTAAG
10817645 TGATTTTAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
41 3 0.06
42 21 0.45
43 23 0.49
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.27
Consensus pattern (42 bp):
ATGTCACCACTAAGAAAATGAAATTCAAGCTTTAATACTCAG
Done.