Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 65 of 190
Found at i:10818433 original size:19 final size:19
Alignment explanation
Indices: 10818409--10818446 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
10818399 ATTATGCCAC
10818409 TTATTTTTCTT-AAAATTTT
1 TTATTTTT-TTCAAAATTTT
10818428 TTATTTTTTTCAAAATTTT
1 TTATTTTTTTCAAAATTTT
10818447 ATTTTCCTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTTTTTTCAAAATTTT
Found at i:10820116 original size:21 final size:22
Alignment explanation
Indices: 10820075--10820126 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
10820065 TTGGTGGCTT
*
10820075 TATGGTTTGTGATTGAGTATGC
1 TATGGTTTGTGATTGAATATGC
* *
10820097 TATGGTTT-TGGTTGAATATGT
1 TATGGTTTGTGATTGAATATGC
10820118 TATGGTTTG
1 TATGGTTTG
10820127 AGTAGTGTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.17, C:0.02, G:0.31, T:0.50
Consensus pattern (22 bp):
TATGGTTTGTGATTGAATATGC
Found at i:10822091 original size:27 final size:28
Alignment explanation
Indices: 10822060--10822113 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
10822050 ATAGATTCAT
*
10822060 AATTTAGATAACATATTAAAT-TTTTAA
1 AATTTAAATAACATATTAAATATTTTAA
**
10822087 AATTTAAATATTATATTAAATATTTTA
1 AATTTAAATAACATATTAAATATTTTA
10822114 CTATAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (28 bp):
AATTTAAATAACATATTAAATATTTTAA
Found at i:10823998 original size:2 final size:2
Alignment explanation
Indices: 10823991--10824028 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
10823981 ATCTATCCTC
10823991 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10824029 GAAAGATTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10831489 original size:25 final size:25
Alignment explanation
Indices: 10831461--10831508 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
10831451 ATAATATAAA
10831461 TTTTTT-TTAAAAAATATATTATTC
1 TTTTTTATTAAAAAATATATTATTC
* *
10831485 TTTTTTATTATAAAATATTTTATT
1 TTTTTTATTAAAAAATATATTATT
10831509 ATCAAGTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (25 bp):
TTTTTTATTAAAAAATATATTATTC
Found at i:10831905 original size:13 final size:12
Alignment explanation
Indices: 10831872--10831906 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
10831862 GGATTTTCAG
10831872 AAGGTTTTGAGT
1 AAGGTTTTGAGT
*
10831884 AAGGGTTTGAGT
1 AAGGTTTTGAGT
10831896 AGAGGTTTTGA
1 A-AGGTTTTGA
10831907 AGGTTTGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (12 bp):
AAGGTTTTGAGT
Found at i:10831985 original size:14 final size:15
Alignment explanation
Indices: 10831966--10832047 Score: 67
Period size: 16 Copynumber: 5.4 Consensus size: 15
10831956 TAGAAGGTTT
10831966 AGGGTTTTGA-TTTA
1 AGGGTTTTGATTTTA
10831980 AGGGTTTTGATTTTA
1 AGGGTTTTGATTTTA
* *
10831995 GGGGTTTCAGATTTTA
1 AGGGTTT-TGATTTTA
* * *
10832011 TGGGTTTGGATTTAA
1 AGGGTTTTGATTTTA
* * *
10832026 AAGATTTTGGATTTTT
1 AGGGTTTT-GATTTTA
10832042 AGGGTT
1 AGGGTT
10832048 AATGTTTAAG
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
14 10 0.19
15 20 0.38
16 22 0.42
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.49
Consensus pattern (15 bp):
AGGGTTTTGATTTTA
Found at i:10831999 original size:15 final size:14
Alignment explanation
Indices: 10831963--10832023 Score: 68
Period size: 14 Copynumber: 4.1 Consensus size: 14
10831953 ATATAGAAGG
10831963 TTTAGGGTTTTGAT
1 TTTAGGGTTTTGAT
*
10831977 TTAAGGGTTTTGAT
1 TTTAGGGTTTTGAT
*
10831991 TTTAGGGGTTTCAGAT
1 TTTA-GGGTTT-TGAT
*
10832007 TTTATGGGTTTGGAT
1 TTTA-GGGTTTTGAT
10832022 TT
1 TT
10832024 AAAAGATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
14 16 0.40
15 11 0.28
16 13 0.32
ACGTcount: A:0.16, C:0.02, G:0.30, T:0.52
Consensus pattern (14 bp):
TTTAGGGTTTTGAT
Found at i:10832406 original size:21 final size:21
Alignment explanation
Indices: 10832382--10832421 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10832372 TTATTATTAA
10832382 AACA-ATTAAAAAACTTATCCT
1 AACAGATT-AAAAACTTATCCT
*
10832403 AACAGATTTAAAACTTATC
1 AACAGATTAAAAACTTATC
10832422 ATGCATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.50, C:0.17, G:0.03, T:0.30
Consensus pattern (21 bp):
AACAGATTAAAAACTTATCCT
Found at i:10832495 original size:9 final size:8
Alignment explanation
Indices: 10832450--10832494 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
10832440 AAAAATAGTT
10832450 AAAATAACA
1 AAAATAA-A
*
10832459 AAAATAAT
1 AAAATAAA
* *
10832467 AATATATA
1 AAAATAAA
10832475 AAAATAAA
1 AAAATAAA
10832483 AAAATAAA
1 AAAATAAA
10832491 AAAA
1 AAAA
10832495 AAATTTTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
8 23 0.77
9 7 0.23
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (8 bp):
AAAATAAA
Found at i:10833462 original size:17 final size:18
Alignment explanation
Indices: 10833432--10833466 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
10833422 GTTCTACTTT
10833432 TTTTTAATAATTAATTAA
1 TTTTTAATAATTAATTAA
*
10833450 TTTTTAAT-TTTAATTAA
1 TTTTTAATAATTAATTAA
10833467 ACCAATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTTAATAATTAATTAA
Found at i:10834060 original size:135 final size:134
Alignment explanation
Indices: 10833812--10834162 Score: 499
Period size: 135 Copynumber: 2.6 Consensus size: 134
10833802 ATCAAGATTG
* * * *
10833812 AACTTAGATTGAATCACAAGTCAAAATATAAAGAGACCATGATTAAACCATGAGTCGGAAAAA-A
1 AACTTGGATTGAATCACAAGTCAAAA-ATAAAGAGACCAGGATTAAACCACGAGTC-AAAAAATA
* * * *
10833876 ATAACAATCAAGATTAAACTGCGATTTTGGATTAAAGAAATCGAGATTGAACCGCGAGTCAGAAT
64 ATAACAATCGAGATTAAACTACGATTTTGGATTAAAAAAATCGAAATTGAACCGCGAGTCAGAAT
10833941 AACGTC
129 AACGTC
*
10833947 AACTTGGATTGAATCACAAGTCAGAAAATAAAGAGA-CTGAGATTAAACCACGAGTCAAAAAATA
1 AACTTGGATTGAATCACAAGTCA-AAAATAAAGAGACCAG-GATTAAACCACGAGTCAAAAAATA
* * *
10834011 ATAACAATCGAGATTAACCTACGATTTTGGATTAAAAAAATTGAAATTGAACTGCGAGTCAGAAT
64 ATAACAATCGAGATTAAACTACGATTTTGGATTAAAAAAATCGAAATTGAACCGCGAGTCAGAAT
* *
10834076 AATGTT
129 AACGTC
*
10834082 AACTTGGATTGAATCACAAGTCAAAAAATAAAGAGACCAGGATTAAACCACGAGTTAAAAAATAA
1 AACTTGGATTGAATCACAAGTC-AAAAATAAAGAGACCAGGATTAAACCACGAGTCAAAAAATAA
*
10834147 CAACAATCGAGATTAA
65 TAACAATCGAGATTAA
10834163 TCGAAATTAA
Statistics
Matches: 194, Mismatches: 17, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
134 6 0.03
135 182 0.94
136 6 0.03
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.22
Consensus pattern (134 bp):
AACTTGGATTGAATCACAAGTCAAAAATAAAGAGACCAGGATTAAACCACGAGTCAAAAAATAAT
AACAATCGAGATTAAACTACGATTTTGGATTAAAAAAATCGAAATTGAACCGCGAGTCAGAATAA
CGTC
Found at i:10834335 original size:179 final size:180
Alignment explanation
Indices: 10833988--10834341 Score: 568
Period size: 180 Copynumber: 2.0 Consensus size: 180
10833978 AGAGACTGAG
* * *
10833988 ATTAAACCACGAGTCAAAAAATAATAACAATCGAGATTAACCTACGATTTTGGATTAAAAAAATT
1 ATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAAACTACGATTTTGGATTAAAAAAATA
* * * *
10834053 GAAATTGAACTGCGAGTCAGAATAATGTTAACTTGGATTGAATCACAAGTCAAAAAATAAAGAGA
66 GAAATTGAACTACGAGTCAAAATAACGTCAACTTGGATTGAATCACAAGTCAAAAAATAAAGAGA
10834118 CCAGGATTAAACCACGAGTTAAAAAATAACAACAATCGAGATTAATCGAA
131 CCAGGATTAAACCACGAGTTAAAAAATAACAACAATCGAGATTAATCGAA
* *
10834168 ATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAAACTGCGATTTTGGATTAAAGAAATC
1 ATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAAACTACGATTTTGGATTAAAAAAAT-
*
10834233 AG-GATTGAACTACGAGTCAAAATAACGTCAA-TTGGATTGAATCACAAGTCAAAAAATAAAGAG
65 AGAAATTGAACTACGAGTCAAAATAACGTCAACTTGGATTGAATCACAAGTCAAAAAATAAAGAG
* * *
10834296 ACCGGGATTAAATCACGAGTTAGAAAATAACAACAATCGAGATTAA
130 ACCAGGATTAAACCACGAGTTAAAAAATAACAACAATCGAGATTAA
10834342 CCTGTGATTT
Statistics
Matches: 160, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
179 75 0.47
180 84 0.52
181 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.16, T:0.22
Consensus pattern (180 bp):
ATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAAACTACGATTTTGGATTAAAAAAATA
GAAATTGAACTACGAGTCAAAATAACGTCAACTTGGATTGAATCACAAGTCAAAAAATAAAGAGA
CCAGGATTAAACCACGAGTTAAAAAATAACAACAATCGAGATTAATCGAA
Found at i:10834423 original size:314 final size:315
Alignment explanation
Indices: 10833853--10834476 Score: 959
Period size: 314 Copynumber: 2.0 Consensus size: 315
10833843 AGAGACCATG
* * *
10833853 ATTAAACCATGAGTCGGAAAAAAATAACAATCAAGATTAAACTGCGATTTTGGATTAAAGAAATC
1 ATTAAACCACGAGTCGAAAAAAAACAACAATCAAGATTAAACTGCGATTTTGGATTAAAGAAATC
* * *
10833918 GAGATTGAACCGCGAGTCAGAATAACGTCAACTTGGATTGAATCACAAGTCAGAAAATAAAGAGA
66 GAGATTGAACCACGAGTCAAAATAACGTCAACTTGGATTGAATCACAAGTCAAAAAATAAAGAGA
* *
10833983 CTGAGATTAAACCACGAGTCAAAAAATAATAACAATCGAGATTAACCTACGATTTTGGATTAAAA
131 CCGAGATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAACCTACGATTTTGGATTAAAA
* * * *
10834048 AAATTGAAATTGAACTGCGAGTCAGAATAATGTTAACTTGGATTGAATCACAAGTCAAAAAATAA
196 AAATCGAAATTGAACTGCGAGTCAAAATAACGTCAACTTGGATTGAATCACAAGTCAAAAAATAA
*
10834113 AGAGACCAGGATTAAACCACGAGTTAAAAAATAACAACAATCGAGATTAATCGAA
261 AGAGACCAGGATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAATCGAA
*
10834168 ATTAAACCACGAGTC-AAAAAATAACAACAATCGAGATTAAACTGCGATTTTGGATTAAAGAAAT
1 ATTAAACCACGAGTCGAAAAAA-AACAACAATCAAGATTAAACTGCGATTTTGGATTAAAGAAAT
*
10834232 C-AGGATTGAACTACGAGTCAAAATAACGTCAA-TTGGATTGAATCACAAGTCAAAAAATAAAGA
65 CGA-GATTGAACCACGAGTCAAAATAACGTCAACTTGGATTGAATCACAAGTCAAAAAATAAAGA
* * * * **
10834295 GACCGGGATTAAATCACGAGTTAGAAAATAACAACAATCGAGATTAACCTGTGATTTTGGATTAA
129 GACCGAGATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAACCTACGATTTTGGATTAA
* *
10834360 AGAAATCGAGATTGAA-TCGCGAGTCAAAATAACGTCAACTTGGATTGAATCACAAGTCAAAAAA
194 AAAAATCGAAATTGAACT-GCGAGTCAAAATAACGTCAACTTGGATTGAATCACAAGTCAAAAAA
* * *
10834424 TAAAGAGACCGGGATTAAATCACGAGTCAGAAAATAACAACAATCGAGATTAA
258 TAAAGAGACCAGGATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAA
10834477 CCTGCGATTT
Statistics
Matches: 280, Mismatches: 26, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
313 1 0.00
314 198 0.71
315 81 0.29
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.22
Consensus pattern (315 bp):
ATTAAACCACGAGTCGAAAAAAAACAACAATCAAGATTAAACTGCGATTTTGGATTAAAGAAATC
GAGATTGAACCACGAGTCAAAATAACGTCAACTTGGATTGAATCACAAGTCAAAAAATAAAGAGA
CCGAGATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAACCTACGATTTTGGATTAAAA
AAATCGAAATTGAACTGCGAGTCAAAATAACGTCAACTTGGATTGAATCACAAGTCAAAAAATAA
AGAGACCAGGATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAATCGAA
Found at i:10834473 original size:135 final size:134
Alignment explanation
Indices: 10834168--10834665 Score: 617
Period size: 135 Copynumber: 3.7 Consensus size: 134
10834158 ATTAATCGAA
*
10834168 ATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAAACTGCGATTTTGGATTAAAGAAATC
1 ATTAAACCACGAGTCAGAAAATAACAACAATCGAGATTAAACTGCGATTTTGGATTAAAGAAATC
*
10834233 -AGGATTGAACTACGAGTCAAAATAACGTCAATTGGATTGAATCACAAGTCAAAAAATAAAGAGA
66 GA-GATTGAACTGCGAGTCAAAATAACGTCAATTGGATTGAATCACAAGTCAAAAAATAAAGAGA
10834297 CCGGG
130 CCGGG
* * * *
10834302 ATTAAATCACGAGTTAGAAAATAACAACAATCGAGATTAACCTGTGATTTTGGATTAAAGAAATC
1 ATTAAACCACGAGTCAGAAAATAACAACAATCGAGATTAAACTGCGATTTTGGATTAAAGAAATC
10834367 GAGATTGAA-TCGCGAGTCAAAATAACGTCAACTTGGATTGAATCACAAGTCAAAAAATAAAGAG
66 GAGATTGAACT-GCGAGTCAAAATAACGTCAA-TTGGATTGAATCACAAGTCAAAAAATAAAGAG
10834431 ACCGGG
129 ACCGGG
* * * *
10834437 ATTAAATCACGAGTCAGAAAATAACAACAATCGAGATTAACCTGCGATTTTGAATTAAAAAAAAT
1 ATTAAACCACGAGTCAGAAAATAACAACAATCGAGATTAAACTGCGATTTTGGATT-AAAGAAAT
** * * **** **
10834502 CGAGATTGAACTGCGAGTCAGAAAATAACAACAATTGAGATT-AAACTACAATTTTGGATTTAAA
65 CGAGATTGAACTGCGAGTC--AAAATAACGTCAATTG-GATTGAATC-ACAAGTCAAAAAATAAA
*
10834566 GAGATCGGG
126 GAGACCGGG
* * * * * *
10834575 ATTGAACCGCGAGTCA-AAGAATAACAATAATCAAGATTAAACTGTGATTTTTGGATTTAAAGAG
1 ATTAAACCACGAGTCAGAA-AATAACAACAATCGAGATTAAACTGCGA-TTTTGGA-TTAAAGAA
*
10834639 ATCGAGATTGAACAGCGAGTCAAAATA
63 ATCGAGATTGAACTGCGAGTCAAAATA
10834666 TAAAGAGATT
Statistics
Matches: 320, Mismatches: 32, Indels: 21
0.86 0.09 0.06
Matches are distributed among these distances:
133 1 0.00
134 86 0.27
135 92 0.29
136 24 0.08
137 15 0.05
138 70 0.22
139 30 0.09
140 2 0.01
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.23
Consensus pattern (134 bp):
ATTAAACCACGAGTCAGAAAATAACAACAATCGAGATTAAACTGCGATTTTGGATTAAAGAAATC
GAGATTGAACTGCGAGTCAAAATAACGTCAATTGGATTGAATCACAAGTCAAAAAATAAAGAGAC
CGGG
Found at i:10834519 original size:69 final size:68
Alignment explanation
Indices: 10834424--10834668 Score: 276
Period size: 69 Copynumber: 3.5 Consensus size: 68
10834414 AGTCAAAAAA
* * * *
10834424 TAAAGAGACCGGGATTAAATCA-CGAGTCAGAAAATAACAACAATCGAGATTAACCTGCGATTTT
1 TAAAGAGATCGAGATTGAA-CAGCGAGTCA-AAAATAACAACAATCGAGATTAAACTGCGATTTT
*
10834488 GAATT
64 GGATT
* * * * * * *
10834493 AAAAAAAATCGAGATTGAACTGCGAGTCAGAAAATAACAACAATTGAGATTAAACTACAATTTTG
1 TAAAGAGATCGAGATTGAACAGCGAGTCA-AAAATAACAACAATCGAGATTAAACTGCGATTTTG
10834558 GATT
65 GATT
* * * * *
10834562 TAAAGAGATCGGGATTGAACCGCGAGTCAAAGAATAACAATAATCAAGATTAAACTGTGATTTTT
1 TAAAGAGATCGAGATTGAACAGCGAGTCAAA-AATAACAACAATCGAGATTAAACTGCGA-TTTT
10834627 GGATT
64 GGATT
10834632 TAAAGAGATCGAGATTGAACAGCGAGTCAAAATATAA
1 TAAAGAGATCGAGATTGAACAGCGAGTCAAAA-ATAA
10834669 AGAGATTGAG
Statistics
Matches: 147, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
68 3 0.02
69 102 0.69
70 42 0.29
ACGTcount: A:0.44, C:0.13, G:0.19, T:0.24
Consensus pattern (68 bp):
TAAAGAGATCGAGATTGAACAGCGAGTCAAAAATAACAACAATCGAGATTAAACTGCGATTTTGG
ATT
Found at i:10834543 original size:35 final size:34
Alignment explanation
Indices: 10834446--10834545 Score: 112
Period size: 34 Copynumber: 2.9 Consensus size: 34
10834436 GATTAAATCA
10834446 CGAGTCAGAAAATAACAACAATCGAGATTAACCTG
1 CGAGTCAGAAAATAACAACAATCGAGATTAA-CTG
* ** * * *
10834481 CGATTTTG-AATTAAAAAAAATCGAGATTGAACTG
1 CGAGTCAGAAAATAACAACAATCGAGATT-AACTG
*
10834515 CGAGTCAGAAAATAACAACAATTGAGATTAA
1 CGAGTCAGAAAATAACAACAATCGAGATTAA
10834546 ACTACAATTT
Statistics
Matches: 50, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
34 27 0.54
35 23 0.46
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.22
Consensus pattern (34 bp):
CGAGTCAGAAAATAACAACAATCGAGATTAACTG
Found at i:10834657 original size:70 final size:69
Alignment explanation
Indices: 10834177--10834668 Score: 273
Period size: 69 Copynumber: 7.2 Consensus size: 69
10834167 AATTAAACCA
* * *
10834177 CGAGTCAAAAAATAACAACAATCGAGATTAAACTGCGATTTTGGA-TTAAAGAAATC-AGGATTG
1 CGAGTCAGAAAATAACAACAATCGAGATTAAACTGAGATTTTGGATTTAAAGAGATCGA-GATTG
10834240 AACTA-
65 AAC-AG
** * * * * * **** ** * * *
10834245 CGAGTC--AAAATAACGTCAATTG-GATTGAA-TCACAAGTCAAAAAATAAAGAGACCGGGATTA
1 CGAGTCAGAAAATAACAACAATCGAGATTAAACTGA-GATTTTGGATTTAAAGAGATCGAGATTG
10834306 AATCA-
65 AA-CAG
* * * *
10834311 CGAGTTAGAAAATAACAACAATCGAGATTAACCTGTGATTTTGGA-TTAAAGAAATCGAGATTGA
1 CGAGTCAGAAAATAACAACAATCGAGATTAAACTGAGATTTTGGATTTAAAGAGATCGAGATTGA
10834375 ATC-G
66 A-CAG
** * * * * * **** ** * *
10834379 CGAGTC--AAAATAACGTCAACTTG-GATTGAA-TCACAAGTCAAAAAATAAAGAGACCGGGATT
1 CGAGTCAGAAAATAACAACAA-TCGAGATTAAACTGA-GATTTTGGATTTAAAGAGATCGAGATT
*
10834440 AAATCA-
64 GAA-CAG
* * * * * *
10834446 CGAGTCAGAAAATAACAACAATCGAGATTAACCTGCGATTTTGAATTAAAAAAAATCGAGATTGA
1 CGAGTCAGAAAATAACAACAATCGAGATTAAACTGAGATTTTGGATTTAAAGAGATCGAGATTGA
*
10834511 ACTG
66 ACAG
* * *
10834515 CGAGTCAGAAAATAACAACAATTGAGATTAAACT-ACAATTTTGGATTTAAAGAGATCGGGATTG
1 CGAGTCAGAAAATAACAACAATCGAGATTAAACTGA-GATTTTGGATTTAAAGAGATCGAGATTG
*
10834579 AACCG
65 AACAG
* * *
10834584 CGAGTCA-AAGAATAACAATAATCAAGATTAAACTGTGATTTTTGGATTTAAAGAGATCGAGATT
1 CGAGTCAGAA-AATAACAACAATCGAGATTAAACTGAGA-TTTTGGATTTAAAGAGATCGAGATT
10834648 GAACAG
64 GAACAG
10834654 CGAGTCA-AAATATAA
1 CGAGTCAGAAA-ATAA
10834669 AGAGATTGAG
Statistics
Matches: 308, Mismatches: 93, Indels: 44
0.69 0.21 0.10
Matches are distributed among these distances:
64 1 0.00
65 10 0.03
66 52 0.17
67 26 0.08
68 46 0.15
69 129 0.42
70 44 0.14
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (69 bp):
CGAGTCAGAAAATAACAACAATCGAGATTAAACTGAGATTTTGGATTTAAAGAGATCGAGATTGA
ACAG
Found at i:10834861 original size:109 final size:109
Alignment explanation
Indices: 10834706--10835031 Score: 397
Period size: 109 Copynumber: 3.0 Consensus size: 109
10834696 AAAATAAGGA
* * * * * * *
10834706 GACTGGGATTAAACCGTAATTCAA-AAACTATAAAAATGATCAAGATTAAACCACGAGTCAAAGA
1 GACTAGGATTAAATCATAAGTCAAGAAGCTATAAGAATGATCGAGATTAAACCACGAGTCAAAGA
10834770 TTAAAGATAACTGGGACTGAATCGCAAGTCAGAGAAATAAAAGT
66 TTAAAGATAACTGGGACTGAATCGCAAGTCAGAGAAATAAAAGT
* *
10834814 GACTAGGATTAAATCATAAGTCAAGAAGCTATAAGAATGATCGAGATTAAACCATGAGTGAAAGA
1 GACTAGGATTAAATCATAAGTCAAGAAGCTATAAGAATGATCGAGATTAAACCACGAGTCAAAGA
* * * ** * *
10834879 TTAAAGATAACTGAGATTGAACCATAAGTCAAAGAAATAAAAGC
66 TTAAAGATAACTGGGACTGAATCGCAAGTCAGAGAAATAAAAGT
** * * * *
10834923 GACTAGGATTAAATCATAAGTGGAGAAGCCATAAGAATGATCGGGATTAAATCACGAGTTAAAGA
1 GACTAGGATTAAATCATAAGTCAAGAAGCTATAAGAATGATCGAGATTAAACCACGAGTCAAAGA
* *
10834988 TTAACA-ATGACCT-GGACTGAATCGCAAGTCAGGGAAATAAAAGT
66 TTAA-AGAT-AACTGGGACTGAATCGCAAGTCAGAGAAATAAAAGT
10835032 AACCAAAACT
Statistics
Matches: 183, Mismatches: 32, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
108 20 0.11
109 159 0.87
110 4 0.02
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.21
Consensus pattern (109 bp):
GACTAGGATTAAATCATAAGTCAAGAAGCTATAAGAATGATCGAGATTAAACCACGAGTCAAAGA
TTAAAGATAACTGGGACTGAATCGCAAGTCAGAGAAATAAAAGT
Found at i:10847315 original size:13 final size:12
Alignment explanation
Indices: 10847282--10847316 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
10847272 GGATTTTCAG
10847282 AAGGTTTTGAGT
1 AAGGTTTTGAGT
*
10847294 AAGGGTTTGAGT
1 AAGGTTTTGAGT
10847306 AGAGGTTTTGA
1 A-AGGTTTTGA
10847317 AAGTTTGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (12 bp):
AAGGTTTTGAGT
Found at i:10848847 original size:17 final size:18
Alignment explanation
Indices: 10848817--10848851 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
10848807 GTTTTACTTT
10848817 TTTTTAATAATTAATTAA
1 TTTTTAATAATTAATTAA
*
10848835 TTTTTAAT-TTTAATTAA
1 TTTTTAATAATTAATTAA
10848852 ACCAATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTTAATAATTAATTAA
Found at i:10857867 original size:8 final size:9
Alignment explanation
Indices: 10857842--10857866 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10857832 TTATATATTA
10857842 TTATTTTTG
1 TTATTTTTG
10857851 TTATTTTTG
1 TTATTTTTG
10857860 TTATTTT
1 TTATTTT
10857867 GAGTATCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.08, T:0.80
Consensus pattern (9 bp):
TTATTTTTG
Found at i:10857964 original size:23 final size:21
Alignment explanation
Indices: 10857938--10857979 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
10857928 ATTTTTAATA
10857938 ATAATAAAATAAAATAAAATAGG
1 ATAAT-AAATAAAA-AAAATAGG
*
10857961 ATAATAACTAAAAAAAATA
1 ATAATAAATAAAAAAAATA
10857980 CTACAAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 7 0.39
23 5 0.28
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.21
Consensus pattern (21 bp):
ATAATAAATAAAAAAAATAGG
Found at i:10858162 original size:3 final size:3
Alignment explanation
Indices: 10858154--10858196 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
10858144 TATAAAAATG
10858154 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10858197 ATTTTCATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10858410 original size:29 final size:29
Alignment explanation
Indices: 10858377--10858484 Score: 85
Period size: 29 Copynumber: 3.7 Consensus size: 29
10858367 TTTCAAACAT
* *
10858377 TAAAATTAAACTTTAAAACC-TCTTAACCC
1 TAAAATTAAACCTTAAAACCTTC-GAACCC
*
10858406 TAAAATTAAACCTTAAATCCTTCGAACCC
1 TAAAATTAAACCTTAAAACCTTCGAACCC
** **
10858435 TAAAAGCGAAACCTT-AAACTCTTAAAACCC
1 TAAAA-TTAAACCTTAAAAC-CTTCGAACCC
* *
10858465 TAAAATCAAATCCCTAAAAC
1 TAAAATTAAA-CCTTAAAAC
10858485 ATCCAAACCT
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
29 34 0.54
30 25 0.40
31 4 0.06
ACGTcount: A:0.46, C:0.26, G:0.03, T:0.25
Consensus pattern (29 bp):
TAAAATTAAACCTTAAAACCTTCGAACCC
Found at i:10858493 original size:30 final size:28
Alignment explanation
Indices: 10858401--10858557 Score: 100
Period size: 30 Copynumber: 5.4 Consensus size: 28
10858391 AAAACCTCTT
* * * * *
10858401 AACCCTAAAATTAAACCTTAAATCCTTCG
1 AACCCTAAAATCAAACCCTAAA-CATCCA
* * *
10858430 AACCCTAAAAGCGAAACCTTAAAC-TCTTAA
1 AACCCTAAAATC-AAACCCTAAACATC--CA
10858460 AACCCTAAAATCAAATCCCTAAAACATCCA
1 AACCCTAAAATCAAA-CCCT-AAACATCCA
* * **
10858490 AACCTTAAAATCAAACCCCAAACACTTTA
1 AACCCTAAAATCAAACCCTAAACA-TCCA
* * *
10858519 AACCATAAAATCAAAACCCTAACCCTCCA
1 AACCCTAAAATC-AAACCCTAAACATCCA
10858548 AACCCTAAAA
1 AACCCTAAAA
10858558 AATCCTAAAA
Statistics
Matches: 101, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
28 6 0.06
29 41 0.41
30 48 0.48
31 4 0.04
32 2 0.02
ACGTcount: A:0.48, C:0.31, G:0.02, T:0.19
Consensus pattern (28 bp):
AACCCTAAAATCAAACCCTAAACATCCA
Found at i:10858506 original size:59 final size:58
Alignment explanation
Indices: 10858430--10858557 Score: 148
Period size: 59 Copynumber: 2.2 Consensus size: 58
10858420 AAATCCTTCG
* ** * * *
10858430 AACCCTAAAAGCGAAACCTTAAACTCTTAAAACCCTAAAATCAAATCCCTAAAACATCCA
1 AACCCTAAAATC-AAACCCCAAACACTTAAAACCATAAAATCAAAACCCT-AAACATCCA
* * * *
10858490 AACCTTAAAATCAAACCCCAAACACTTTAAACCATAAAATCAAAACCCTAACCCTCCA
1 AACCCTAAAATCAAACCCCAAACACTTAAAACCATAAAATCAAAACCCTAAACATCCA
10858548 AACCCTAAAA
1 AACCCTAAAA
10858558 AATCCTAAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
58 16 0.28
59 31 0.54
60 10 0.18
ACGTcount: A:0.49, C:0.32, G:0.02, T:0.17
Consensus pattern (58 bp):
AACCCTAAAATCAAACCCCAAACACTTAAAACCATAAAATCAAAACCCTAAACATCCA
Found at i:10858550 original size:29 final size:29
Alignment explanation
Indices: 10858459--10858557 Score: 99
Period size: 29 Copynumber: 3.4 Consensus size: 29
10858449 TAAACTCTTA
* * *
10858459 AAACCCTAAAATCAAATCCCTAAAACATCC
1 AAACCCTAAAATCAAAACCCT-AACCCTCC
* * * * **
10858489 AAACCTTAAAATCAAACCCCAAACACTTT
1 AAACCCTAAAATCAAAACCCTAACCCTCC
*
10858518 AAACCATAAAATCAAAACCCTAACCCTCC
1 AAACCCTAAAATCAAAACCCTAACCCTCC
10858547 AAACCCTAAAA
1 AAACCCTAAAA
10858558 AATCCTAAAA
Statistics
Matches: 54, Mismatches: 15, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
29 36 0.67
30 18 0.33
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.16
Consensus pattern (29 bp):
AAACCCTAAAATCAAAACCCTAACCCTCC
Found at i:10858613 original size:14 final size:14
Alignment explanation
Indices: 10858579--10858633 Score: 65
Period size: 14 Copynumber: 3.8 Consensus size: 14
10858569 CTCGAAATTG
*
10858579 AAACCCTAAACCTTCA
1 AAACCCTAAAAC-T-A
10858595 AAACCCTAAAACTA
1 AAACCCTAAAACTA
* *
10858609 AAACCCCAAAACTG
1 AAACCCTAAAACTA
10858623 AAACCCTAAAA
1 AAACCCTAAAA
10858634 TCCAAAATCC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 23 0.66
15 1 0.03
16 11 0.31
ACGTcount: A:0.53, C:0.33, G:0.02, T:0.13
Consensus pattern (14 bp):
AAACCCTAAAACTA
Found at i:10858642 original size:7 final size:7
Alignment explanation
Indices: 10858630--10858671 Score: 50
Period size: 7 Copynumber: 5.7 Consensus size: 7
10858620 CTGAAACCCT
10858630 AAAATCC
1 AAAATCC
10858637 AAAATCC
1 AAAATCC
10858644 AAAAATCC
1 -AAAATCC
10858652 AAAA-CC
1 AAAATCC
10858658 TTAAAATCC
1 --AAAATCC
10858667 AAAAT
1 AAAAT
10858672 TCTAAAGACC
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
6 2 0.06
7 16 0.52
8 11 0.35
9 2 0.06
ACGTcount: A:0.60, C:0.24, G:0.00, T:0.17
Consensus pattern (7 bp):
AAAATCC
Found at i:10858650 original size:15 final size:16
Alignment explanation
Indices: 10858630--10858677 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
10858620 CTGAAACCCT
10858630 AAAATCCAAAATCC-A
1 AAAATCCAAAATCCTA
*
10858645 AAAATCCAAAA-CCTT
1 AAAATCCAAAATCCTA
*
10858660 AAAATCCAAAATTCTA
1 AAAATCCAAAATCCTA
10858676 AA
1 AA
10858678 GACCCCAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 2 0.07
15 22 0.79
16 4 0.14
ACGTcount: A:0.58, C:0.23, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAATCCAAAATCCTA
Found at i:10858656 original size:44 final size:45
Alignment explanation
Indices: 10858532--10858657 Score: 114
Period size: 44 Copynumber: 2.8 Consensus size: 45
10858522 CATAAAATCA
* * * * *
10858532 AAACCCTAACCCTCC-AAACCCTAAAAAATCCTAAAACCTCGAAATTG
1 AAACCCTAAACATCCAAAACCC--AAAAATCC-AAAACCCCAAAACTG
* * * *
10858579 AAACCCTAAACCTTCAAAACCCTAAAA-CTAAAACCCCAAAACTG
1 AAACCCTAAACATCCAAAACCCAAAAATCCAAAACCCCAAAACTG
*
10858623 AAACCCTAAA-ATCCAAAATCCAAAAATCCAAAACC
1 AAACCCTAAACATCCAAAACCCAAAAATCCAAAACC
10858658 TTAAAATCCA
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
43 12 0.18
44 29 0.45
45 1 0.02
46 4 0.06
47 13 0.20
48 6 0.09
ACGTcount: A:0.50, C:0.33, G:0.02, T:0.14
Consensus pattern (45 bp):
AAACCCTAAACATCCAAAACCCAAAAATCCAAAACCCCAAAACTG
Found at i:10864689 original size:9 final size:9
Alignment explanation
Indices: 10864677--10864719 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
10864667 AATCAAAATC
10864677 AAAAAAGAA
1 AAAAAAGAA
10864686 AAAAAA-AA
1 AAAAAAGAA
*
10864694 GAAAAAAGAG
1 -AAAAAAGAA
*
10864704 AAAAGAGAA
1 AAAAAAGAA
10864713 AAAAAAG
1 AAAAAAG
10864720 TTTTCTTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
8 2 0.07
9 25 0.89
10 1 0.04
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:10864699 original size:25 final size:25
Alignment explanation
Indices: 10864659--10864719 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
10864649 AAGATTTCAA
** *
10864659 AAAAAAAAAATCAAAATCAAAAAAG
1 AAAAAAAAAAGAAAAAACAAAAAAG
* *
10864684 AAAAAAAAAAGAAAAAAGAGAAAAG
1 AAAAAAAAAAGAAAAAACAAAAAAG
*
10864709 AGAAAAAAAAG
1 AAAAAAAAAAG
10864720 TTTTCTTTTG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.82, C:0.03, G:0.11, T:0.03
Consensus pattern (25 bp):
AAAAAAAAAAGAAAAAACAAAAAAG
Found at i:10866768 original size:41 final size:41
Alignment explanation
Indices: 10866723--10866809 Score: 104
Period size: 41 Copynumber: 2.1 Consensus size: 41
10866713 TACTTGTTTG
* * *
10866723 TGCATCATGAA-AGAGACATTTGCATTTGCATCGCTTGCATC
1 TGCATCAT-AAGAAAGACATTCGCATTTGCATCACTTGCATC
* * *
10866764 TGCATCATAAGAAAGACGTTCGCATTTGCATCATTTGCATT
1 TGCATCATAAGAAAGACATTCGCATTTGCATCACTTGCATC
10866805 TGCAT
1 TGCAT
10866810 TTGCATTTGT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 2 0.05
41 37 0.95
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (41 bp):
TGCATCATAAGAAAGACATTCGCATTTGCATCACTTGCATC
Found at i:10867004 original size:18 final size:18
Alignment explanation
Indices: 10866978--10867023 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
10866968 CATATTCTTG
*
10866978 CATTTGCATCGACATTTA
1 CATTAGCATCGACATTTA
* * *
10866996 CATTCGCATTGACATTTT
1 CATTAGCATCGACATTTA
10867014 CATTAGCATC
1 CATTAGCATC
10867024 ATCTGATGAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (18 bp):
CATTAGCATCGACATTTA
Found at i:10867200 original size:41 final size:42
Alignment explanation
Indices: 10867123--10867209 Score: 95
Period size: 41 Copynumber: 2.1 Consensus size: 42
10867113 TTAAAGTTTT
* * * *
10867123 AAAGCCTTTGTTTAAGAAGAACCATTTTGAATCAAGA-TTTA
1 AAAGCCTCTATTTAAGAAGAACCATTTTCAAACAAGACTTTA
* ** *
10867164 AAAGCCTCTATTTAAGAGGAACTTTTTTCAAACAAGACTTTT
1 AAAGCCTCTATTTAAGAAGAACCATTTTCAAACAAGACTTTA
10867206 AAAG
1 AAAG
10867210 TCTCAAAAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
41 30 0.81
42 7 0.19
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (42 bp):
AAAGCCTCTATTTAAGAAGAACCATTTTCAAACAAGACTTTA
Found at i:10867597 original size:127 final size:127
Alignment explanation
Indices: 10867259--10867669 Score: 506
Period size: 128 Copynumber: 3.2 Consensus size: 127
10867249 AGATTTTTAA
* *
10867259 ATTACCTCTGATTAGAAGGAGCATCCAAAGATTTTGAGATTTGTAAGACCT-TCGGGCATAATCT
1 ATTACCTCTGATTA-AAGGAGCATTCAAAGATTTTGAGATTTGTAAGACCTCT-GAGCATAATCT
* * * * * *
10867323 CTAAGATCTTCAGGCATAACTTCCAAAACCTCCGGGCAAAAGATTTTCAAATTTTTAAAGTTTC
64 CTAAGACCTTCGGGCACAACTTCCAAGACCTCCAGGCAAAAGATTTTTAAATTTTTAAAGTTTC
* *
10867387 ATTACCTCTGATTAAGAGGAGCATTCAAAGATTTTGAGATTTGTAAAACCTCTGAGCATAATATC
1 ATTACCTCTGATTAA-AGGAGCATTCAAAGATTTTGAGATTTGTAAGACCTCTGAGCATAATCTC
* **
10867452 TAAGACCTCCGGATACAACTTCCAAGACCTCCAGGCAAAAGATTTTTAAATTTTTAAAGTTTC
65 TAAGACCTTCGGGCACAACTTCCAAGACCTCCAGGCAAAAGATTTTTAAATTTTTAAAGTTTC
*
10867515 ATTACCTCTTATTACAA-GAGCATTCAAAGATTTTGAGATTTGTAAGACCTCTGAGCATAATCTC
1 ATTACCTCTGATTA-AAGGAGCATTCAAAGATTTTGAGATTTGTAAGACCTCTGAGCATAATCTC
* * ** * * * * *
10867579 TAA-AGCCTTTGGGCACAACTTTCAAGATTTTCAGGTAAAAAATTTTTAAATTTTCAAA-ATTC
65 TAAGA-CCTTCGGGCACAACTTCCAAGACCTCCAGGCAAAAGATTTTTAAATTTTTAAAGTTTC
** *
10867641 ACAGACCTCTGATTAAATGAGCATTCAAA
1 A-TTACCTCTGATTAAAGGAGCATTCAAA
10867670 AATGTTGATA
Statistics
Matches: 246, Mismatches: 31, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
126 7 0.03
127 112 0.46
128 125 0.51
129 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (127 bp):
ATTACCTCTGATTAAAGGAGCATTCAAAGATTTTGAGATTTGTAAGACCTCTGAGCATAATCTCT
AAGACCTTCGGGCACAACTTCCAAGACCTCCAGGCAAAAGATTTTTAAATTTTTAAAGTTTC
Found at i:10867796 original size:22 final size:22
Alignment explanation
Indices: 10867770--10867818 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
10867760 GTTGATTCTA
*
10867770 TAAGACCTCCAGACATGATTTT
1 TAAGACCTCCAGACATGATTTG
* * *
10867792 TAAGACCTTCGGGCATGATTTG
1 TAAGACCTCCAGACATGATTTG
10867814 TAAGA
1 TAAGA
10867819 ATTTTGGGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (22 bp):
TAAGACCTCCAGACATGATTTG
Found at i:10867852 original size:22 final size:21
Alignment explanation
Indices: 10867789--10867853 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 21
10867779 CAGACATGAT
* *
10867789 TTTTAAGACCTTCGGGCATGA
1 TTTTAAGACTTTCGGGCATAA
* *
10867810 TTTGTAAGAATTTTGGGCATAA
1 TTT-TAAGACTTTCGGGCATAA
10867832 TCTTTAAGACTTTCGGGCATAA
1 T-TTTAAGACTTTCGGGCATAA
10867854 ATTTGATTCG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 3 0.08
22 31 0.86
23 2 0.06
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.37
Consensus pattern (21 bp):
TTTTAAGACTTTCGGGCATAA
Found at i:10867950 original size:22 final size:22
Alignment explanation
Indices: 10867924--10867985 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
10867914 ATCAATTTTG
*
10867924 TAAGACCTTCGAGCATGAT-TT
1 TAAGACCTTCGAGCATAATCTT
*
10867945 CTAAGACTTTCGAGCATAATCTT
1 -TAAGACCTTCGAGCATAATCTT
10867968 TAAGACCTTC-ATGCATAA
1 TAAGACCTTCGA-GCATAA
10867986 ATTAAATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.03
22 32 0.91
23 2 0.06
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (22 bp):
TAAGACCTTCGAGCATAATCTT
Found at i:10867984 original size:132 final size:132
Alignment explanation
Indices: 10867787--10868071 Score: 371
Period size: 132 Copynumber: 2.2 Consensus size: 132
10867777 TCCAGACATG
* * * * * *
10867787 ATTTT-TAAGACCTTCGGGCATGATTTGTAAGAATTTTGGGCATAATCTTTAAGACTTTCGGGCA
1 ATTTTGTAAGACCTTCGAGCATGATTTCTAAGAATTTCGAGCATAATCTTTAAGACCTTCAGGCA
** * * **
10867851 TAAATTTGA-TT-CGTAGTGTTGTCCTGATCGATTCTTTATTTTTTGACTTACGG-TGTTATTTC
66 TAAATTAAATTTACG-A-TGTTGTCCCGATCAATTCTTTATTTTTTGACTT-CGGATGTTATCCC
10867913 GATCA
128 GATCA
* *
10867918 ATTTTGTAAGACCTTCGAGCATGATTTCTAAGACTTTCGAGCATAATCTTTAAGACCTTCATGCA
1 ATTTTGTAAGACCTTCGAGCATGATTTCTAAGAATTTCGAGCATAATCTTTAAGACCTTCAGGCA
*
10867983 TAAATTAAATTTACGATGTTGTCCCGATCAATTCTTTATTTTTTGACTTGGGATGTTATCCCGAT
66 TAAATTAAATTTACGATGTTGTCCCGATCAATTCTTTATTTTTTGACTTCGGATGTTATCCCGAT
10868048 CA
131 CA
*
10868050 ATTTTGTAAGACTTTCGAGCAT
1 ATTTTGTAAGACCTTCGAGCAT
10868072 AATCTAAGAC
Statistics
Matches: 134, Mismatches: 16, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
131 7 0.05
132 122 0.91
133 3 0.02
134 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (132 bp):
ATTTTGTAAGACCTTCGAGCATGATTTCTAAGAATTTCGAGCATAATCTTTAAGACCTTCAGGCA
TAAATTAAATTTACGATGTTGTCCCGATCAATTCTTTATTTTTTGACTTCGGATGTTATCCCGAT
CA
Found at i:10868148 original size:108 final size:109
Alignment explanation
Indices: 10867946--10868150 Score: 283
Period size: 108 Copynumber: 1.9 Consensus size: 109
10867936 GCATGATTTC
* *
10867946 TAAGACTTTCGAGCATAATCTTTAAGACCTTCATGCATAAATTAAATTTACGATGTTGTCCCGAT
1 TAAGACTTTCGAGCATAATC-TTAAGACCTTCAGGCATAAATTAAATTTACGATGTTATCCCGAT
*
10868011 CAATTCTTTATTTTTTGACTTGGGATGTTATCCCGATCAATTTTG
65 CAATTCTTTATTTTTTGACTTGAGATGTTATCCCGATCAATTTTG
** **
10868056 TAAGACTTTCGAGCATAATC-TAAGACC-TCTAGGCATAAATTCGATTTAC-AGTGTTATCCTTA
1 TAAGACTTTCGAGCATAATCTTAAGACCTTC-AGGCATAAATTAAATTTACGA-TGTTATCCCGA
10868118 TCAATTCTTTATTTTTTGACTTGTAG-TGTTATC
64 TCAATTCTTTATTTTTTGACTTG-AGATGTTATC
10868151 TCGGTGATTC
Statistics
Matches: 85, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
107 3 0.04
108 61 0.72
109 1 0.01
110 20 0.24
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (109 bp):
TAAGACTTTCGAGCATAATCTTAAGACCTTCAGGCATAAATTAAATTTACGATGTTATCCCGATC
AATTCTTTATTTTTTGACTTGAGATGTTATCCCGATCAATTTTG
Found at i:10868208 original size:22 final size:22
Alignment explanation
Indices: 10868183--10868225 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10868173 GGACATGATT
10868183 TTTAAGACCTCAAAGCATAATC
1 TTTAAGACCTCAAAGCATAATC
* * *
10868205 TTTAAGATCTCTAGGCATAAT
1 TTTAAGACCTCAAAGCATAAT
10868226 TTTGATTCAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.33
Consensus pattern (22 bp):
TTTAAGACCTCAAAGCATAATC
Found at i:10868258 original size:239 final size:240
Alignment explanation
Indices: 10867847--10868291 Score: 531
Period size: 239 Copynumber: 1.9 Consensus size: 240
10867837 AAGACTTTCG
* ** * * * *
10867847 GGCATAAATTTGATTCGTAGTGTTGTCCTGATCGATTCTTTATTTTTTGACTTACGGTGTTATTT
1 GGCATAAATTCGATTCACAGTGTTATCCTGATCAATTCTTTATTTTTTGACTTACAGTGTTATCT
* * *
10867912 CGATCAATTTTGTAAGACCTTCGAGCATGATTTCTAAGACTTTCGAGCATAATCTTTAAGACCTT
66 CGATCAATTCTGTAAGACCTTCGAGCATGATTTCTAAGACTCTCAAGCATAATCTTTAAGACCTT
* * * * * **
10867977 CATGCATAAATTAAATTTACGATGTTGTCCCGATCAATTCTTTATTTTTTGACTTG-GGATGTTA
131 CAGGCATAAATTAAATTCACGATGTTATCCCAATCAATTCTTTATTCTTAAACTTGTGG-TGTTA
10868041 TCCCGATCAATTTTGTAAGACTTTCGAGCATAATCTAAGACCTCTA
195 TCCCGATCAATTTTGTAAGACTTTCGAGCATAATCTAAGACCTCTA
* * **
10868087 GGCATAAATTCGATTTACAGTGTTATCCTTATCAATTCTTTATTTTTTGACTTGTAGTGTTATCT
1 GGCATAAATTCGATTCACAGTGTTATCCTGATCAATTCTTTATTTTTTGACTTACAGTGTTATCT
* * * *
10868152 CGGT-GATTCTGTAAGACCTTCG-GACATGATTTTTAAGAC-CTCAAAGCATAATCTTTAAGATC
66 CGATCAATTCTGTAAGACCTTCGAG-CATGATTTCTAAGACTCTC-AAGCATAATCTTTAAGACC
* ** * * *
10868214 -TCTAGGCATAATTTTGATTCACGGTGTTATTCCAATCGATTCTTTATTCTTAAACTTGTGGTGT
129 TTC-AGGCATAAATTAAATTCACGATGTTATCCCAATCAATTCTTTATTCTTAAACTTGTGGTGT
*
10868278 TATCCCGGTCAATT
193 TATCCCGATCAATT
10868292 CTATAAAACC
Statistics
Matches: 169, Mismatches: 32, Indels: 9
0.80 0.15 0.04
Matches are distributed among these distances:
238 5 0.03
239 105 0.62
240 59 0.35
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.41
Consensus pattern (240 bp):
GGCATAAATTCGATTCACAGTGTTATCCTGATCAATTCTTTATTTTTTGACTTACAGTGTTATCT
CGATCAATTCTGTAAGACCTTCGAGCATGATTTCTAAGACTCTCAAGCATAATCTTTAAGACCTT
CAGGCATAAATTAAATTCACGATGTTATCCCAATCAATTCTTTATTCTTAAACTTGTGGTGTTAT
CCCGATCAATTTTGTAAGACTTTCGAGCATAATCTAAGACCTCTA
Found at i:10868357 original size:132 final size:130
Alignment explanation
Indices: 10868053--10868409 Score: 389
Period size: 132 Copynumber: 2.7 Consensus size: 130
10868043 CCGATCAATT
* * * * * *
10868053 TTGTAAGACTTTCGAGCATAA-TCTAAGACCTCTAGGCATAAATTCGATTTACAGTGTTA-TCCT
1 TTGTAAGACCTTCGAGCATAATTTTAAGACCTCTAGGCATAATTTTGATTCACGGTGTTATTCC-
* * * * * * * *
10868116 TATCAATTCTTTATTTTTTGACTTGTAGTGTTATCTCGGTGATTCTGTAAGACCTTCGGACATGA
65 AATCGATTCTTTATTTTTTGACTTGTGGTGTTATCCCGGTAATTCTATAAAACCTCCGGACATGA
*
10868181 T
130 C
* * *
10868182 TTTTAAGACC-TCAAAGCATAATCTTTAAGATCTCTAGGCATAATTTTGATTCACGGTGTTATTC
1 TTGTAAGACCTTC-GAGCATAAT-TTTAAGACCTCTAGGCATAATTTTGATTCACGGTGTTATTC
* **
10868246 CAATCGATTCTTTATTCTTAAACTTGTGGTGTTATCCCGGTCAATTCTATAAAACCTCCAGG-CA
64 CAATCGATTCTTTATTTTTTGACTTGTGGTGTTATCCCGGT-AATTCTATAAAACCTCC-GGACA
10868310 TGAC
127 TGAC
* * * * *
10868314 TTGTAAGACCTTCGAGCATAATTTTTAAGACCTCCAGGTATAATTTTGATTCGCGGTGTTGTCCC
1 TTGTAAGACCTTCGAGCATAA-TTTTAAGACCTCTAGGCATAATTTTGATTCACGGTGTTATTCC
*
10868379 GATCGATTCTTTATTTTTTGACTTGTGGTGT
65 AATCGATTCTTTATTTTTTGACTTGTGGTGT
10868410 CGTCTCGATC
Statistics
Matches: 187, Mismatches: 33, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
128 2 0.01
129 15 0.08
131 65 0.35
132 100 0.53
133 5 0.03
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (130 bp):
TTGTAAGACCTTCGAGCATAATTTTAAGACCTCTAGGCATAATTTTGATTCACGGTGTTATTCCA
ATCGATTCTTTATTTTTTGACTTGTGGTGTTATCCCGGTAATTCTATAAAACCTCCGGACATGAC
Found at i:10868409 original size:37 final size:38
Alignment explanation
Indices: 10868359--10868445 Score: 95
Period size: 37 Copynumber: 2.3 Consensus size: 38
10868349 AGGTATAATT
* * * **
10868359 TTGATTCGCGGTGTTGTCCCGATCG-ATTCTTTATTTT
1 TTGACTCGTGGTGTCGTCCCGATCGTATTCTTTATTAC
* * *
10868396 TTGACTTGTGGTGTCGTCTCGATCGTTTTCTTTATTAC
1 TTGACTCGTGGTGTCGTCCCGATCGTATTCTTTATTAC
10868434 TTGACTCGTGGT
1 TTGACTCGTGGT
10868446 TAAAAAAAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
37 20 0.50
38 20 0.50
ACGTcount: A:0.10, C:0.18, G:0.23, T:0.48
Consensus pattern (38 bp):
TTGACTCGTGGTGTCGTCCCGATCGTATTCTTTATTAC
Found at i:10868625 original size:20 final size:20
Alignment explanation
Indices: 10868602--10868640 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10868592 TCAGTTATTG
* *
10868602 TTTAATATTACTAATAATAA
1 TTTAATAATAATAATAATAA
10868622 TTTAATAATAATAATAATA
1 TTTAATAATAATAATAATA
10868641 TTGGTTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
TTTAATAATAATAATAATAA
Found at i:10870070 original size:15 final size:15
Alignment explanation
Indices: 10870023--10870080 Score: 64
Period size: 15 Copynumber: 3.7 Consensus size: 15
10870013 GAATTATTTT
10870023 ATAAAAATTAATTAATA
1 ATAAAAA-TAA-TAATA
*
10870040 A-AAAAATGGTATAATA
1 ATAAAAAT--AATAATA
10870056 ATAAAAATAATAATA
1 ATAAAAATAATAATA
10870071 ATAAAAATAA
1 ATAAAAATAA
10870081 ATTTTCGTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
15 17 0.47
16 11 0.31
17 8 0.22
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (15 bp):
ATAAAAATAATAATA
Found at i:10870259 original size:14 final size:14
Alignment explanation
Indices: 10870240--10870294 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
10870230 CCAAAGCCTC
*
10870240 TAAACCTTAAAACT
1 TAAACCCTAAAACT
* *
10870254 TAAACCCCAAACCT
1 TAAACCCTAAAACT
10870268 TCAAACCCTAAAA-T
1 T-AAACCCTAAAACT
*
10870282 TAAACTCTAAAAC
1 TAAACCCTAAAAC
10870295 CTCTTAACCC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
13 10 0.30
14 14 0.42
15 9 0.27
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAAACT
Found at i:10870294 original size:29 final size:29
Alignment explanation
Indices: 10870241--10870583 Score: 117
Period size: 29 Copynumber: 11.8 Consensus size: 29
10870231 CAAAGCCTCT
* *
10870241 AAACCTTAAAACTTAAACCC-CAAACCTTC
1 AAACCCTAAAA-TTAAACCCTAAAACCTTC
*
10870270 AAACCCTAAAATTAAACTCTAAAACC-TC
1 AAACCCTAAAATTAAACCCTAAAACCTTC
* ** * *
10870298 TTAACCCT--AATTAAACTTTAAACCCTTT
1 -AAACCCTAAAATTAAACCCTAAAACCTTC
* ** * *
10870326 GAACCCTAAAAGCGAAA-CTTTAAA-CTCTC
1 AAACCCTAAAA-TTAAACCCTAAAACCT-TC
** *
10870355 AAAACTCCTAAAAACGAAA-CCTTAAA-CTCTC
1 -AAAC-CCT-AAAATTAAACCCTAAAACCT-TC
* *
10870386 AAAACCCTAAAATCAAATCCCTAAAA-CATC
1 -AAACCCTAAAATTAAA-CCCTAAAACCTTC
* *
10870416 ATAACCCTAAAATCAAACCCT-AAACACTCC
1 A-AACCCTAAAATTAAACCCTAAAAC-CTTC
* ** * *
10870446 AAACCTTAAAAACAAAACCCT-AACCCTCC
1 AAACCCT-AAAATTAAACCCTAAAACCTTC
* *
10870475 AAACCCT-AAA--AAATCCTAAAACCTTT
1 AAACCCTAAAATTAAACCCTAAAACCTTC
10870501 AAA-CCTCAAAATTGAAACCCT-AAACCTTC
1 AAACCCT-AAAATT-AAACCCTAAAACCTTC
* * * *
10870530 AAAACCCTAAAACTAAAACATCAAACC-TC
1 -AAACCCTAAAATTAAACCCTAAAACCTTC
* *
10870559 AAACCCCAAAACTAAAACCCTAAAA
1 AAACCCTAAAA-TTAAACCCTAAAA
10870584 TCCAAAATCC
Statistics
Matches: 246, Mismatches: 42, Indels: 52
0.72 0.12 0.15
Matches are distributed among these distances:
25 9 0.04
26 8 0.03
27 27 0.11
28 25 0.10
29 77 0.31
30 62 0.25
31 34 0.14
32 4 0.02
ACGTcount: A:0.48, C:0.31, G:0.01, T:0.20
Consensus pattern (29 bp):
AAACCCTAAAATTAAACCCTAAAACCTTC
Found at i:10870319 original size:27 final size:27
Alignment explanation
Indices: 10870279--10870334 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
10870269 CAAACCCTAA
10870279 AATTAAACTCTAAAACCTCTT-AACCCT
1 AATTAAACTCTAAAACCT-TTGAACCCT
* *
10870306 AATTAAACTTTAAACCCTTTGAACCCT
1 AATTAAACTCTAAAACCTTTGAACCCT
10870333 AA
1 AA
10870335 AAGCGAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.41, C:0.27, G:0.02, T:0.30
Consensus pattern (27 bp):
AATTAAACTCTAAAACCTTTGAACCCT
Found at i:10870373 original size:31 final size:30
Alignment explanation
Indices: 10870327--10870486 Score: 130
Period size: 30 Copynumber: 5.4 Consensus size: 30
10870317 AAACCCTTTG
* *
10870327 AACCCTAAAAGCGAAACTTTAAACTCTCAA
1 AACCCTAAAAACGAAACCTTAAACTCTCAA
10870357 AACTCCTAAAAACGAAACCTTAAACTCTCAA
1 AAC-CCTAAAAACGAAACCTTAAACTCTCAA
* * * *
10870388 AACCCTAAAATC-AAATCCCTAAAAC-ATCAT
1 AACCCTAAAAACGAAA--CCTTAAACTCTCAA
* * * *
10870418 AACCCTAAAATC-AAACCCTAAACACTCCA
1 AACCCTAAAAACGAAACCTTAAACTCTCAA
* * * * *
10870447 AACCTTAAAAACAAAACCCT-AACCCTCCA
1 AACCCTAAAAACGAAACCTTAAACTCTCAA
10870476 AACCCTAAAAA
1 AACCCTAAAAA
10870487 ATCCTAAAAC
Statistics
Matches: 110, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
28 6 0.05
29 33 0.30
30 36 0.33
31 35 0.32
ACGTcount: A:0.49, C:0.32, G:0.02, T:0.17
Consensus pattern (30 bp):
AACCCTAAAAACGAAACCTTAAACTCTCAA
Found at i:10870407 original size:14 final size:13
Alignment explanation
Indices: 10870387--10870468 Score: 74
Period size: 16 Copynumber: 5.7 Consensus size: 13
10870377 TAAACTCTCA
10870387 AAACCCTAAAATC
1 AAACCCTAAAATC
10870400 AAATCCCTAAAACATC
1 AAA-CCCT-AAA-ATC
10870416 ATAACCCTAAAATC
1 A-AACCCTAAAATC
10870430 AAACCCTAAACACTCC
1 AAACCCTAAA-A-T-C
* *
10870446 AAACCTTAAAAAC
1 AAACCCTAAAATC
10870459 AAAACCCTAA
1 -AAACCCTAA
10870469 CCCTCCAAAC
Statistics
Matches: 58, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
13 13 0.22
14 17 0.29
15 8 0.14
16 18 0.31
17 2 0.03
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (13 bp):
AAACCCTAAAATC
Found at i:10870568 original size:14 final size:14
Alignment explanation
Indices: 10870530--10870583 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
10870520 CTAAACCTTC
*
10870530 AAAACCCTAAAACT
1 AAAACCCCAAAACT
** *
10870544 AAAACATCAAACCT
1 AAAACCCCAAAACT
*
10870558 CAAACCCCAAAACT
1 AAAACCCCAAAACT
*
10870572 AAAACCCTAAAA
1 AAAACCCCAAAA
10870584 TCCAAAATCC
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.57, C:0.31, G:0.00, T:0.11
Consensus pattern (14 bp):
AAAACCCCAAAACT
Found at i:10872509 original size:1 final size:1
Alignment explanation
Indices: 10872503--10872530 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
10872493 TACCATATAC
10872503 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
10872531 CATATAAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:10875506 original size:3 final size:3
Alignment explanation
Indices: 10875498--10875531 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
10875488 AACCAACAAA
10875498 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
10875532 TTTTTGCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:10876252 original size:29 final size:28
Alignment explanation
Indices: 10876192--10876254 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
10876182 TATTATATTA
* * * *
10876192 ATTAATAAATTTATAATTTAAATATTAT
1 ATTAAAAAATTTAAAATTTAAATATCAC
*
10876220 ATTAAAAAATTTTAAAATTTAATTATCAC
1 ATTAAAAAA-TTTAAAATTTAAATATCAC
10876249 ATTAAA
1 ATTAAA
10876255 TATTTTATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (28 bp):
ATTAAAAAATTTAAAATTTAAATATCAC
Found at i:10876892 original size:16 final size:16
Alignment explanation
Indices: 10876868--10876916 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 16
10876858 TATTATTTGA
*
10876868 TGAATAAAAAAAATTT
1 TGAAAAAAAAAAATTT
10876884 TG-AAAAAAAAAATTT
1 TGAAAAAAAAAAATTT
*
10876899 TAAGAGAAAAAAAAATTT
1 T--GAAAAAAAAAAATTT
10876917 ATTAAATAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 13 0.46
16 2 0.07
17 1 0.04
18 12 0.43
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (16 bp):
TGAAAAAAAAAAATTT
Found at i:10876895 original size:17 final size:16
Alignment explanation
Indices: 10876873--10876916 Score: 63
Period size: 15 Copynumber: 2.7 Consensus size: 16
10876863 TTTGATGAAT
10876873 AAAAAAAATTTTGA-A
1 AAAAAAAATTTTGAGA
10876888 AAAAAAAATTTTAAGAGA
1 AAAAAAAATTTT--GAGA
10876906 AAAAAAAATTT
1 AAAAAAAATTT
10876917 ATTAAATAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 12 0.46
17 2 0.08
18 12 0.46
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (16 bp):
AAAAAAAATTTTGAGA
Found at i:10876917 original size:17 final size:16
Alignment explanation
Indices: 10876873--10876917 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 16
10876863 TTTGATGAAT
*
10876873 AAAAAAAATTT-TGAA
1 AAAAAAAATTTAAGAA
10876888 AAAAAAAATTTTAAGAGA
1 AAAAAAAA-TTTAAGA-A
10876906 AAAAAAAATTTA
1 AAAAAAAATTTA
10876918 TTAAATAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 8 0.31
16 3 0.12
17 6 0.23
18 9 0.35
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (16 bp):
AAAAAAAATTTAAGAA
Found at i:10877490 original size:16 final size:15
Alignment explanation
Indices: 10877470--10877499 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
10877460 ATCAAAAGCT
10877470 TTTTTTAATTTGCCA
1 TTTTTTAATTTGCCA
10877485 TTTTTTAATTTGCCA
1 TTTTTTAATTTGCCA
10877500 GACAGTAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.07, T:0.60
Consensus pattern (15 bp):
TTTTTTAATTTGCCA
Found at i:10877787 original size:41 final size:41
Alignment explanation
Indices: 10877739--10877823 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
10877729 AGATTGAATT
10877739 GGCAAGCATATACATAAATAATTTTATTTTCTAGATTATTA
1 GGCAAGCATATACATAAATAATTTTATTTTCTAGATTATTA
10877780 GGCAAGCATATACATAAATAATTTTATTTTCTAGATTATTA
1 GGCAAGCATATACATAAATAATTTTATTTTCTAGATTATTA
10877821 GGC
1 GGC
10877824 TATCTGTGGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.40
Consensus pattern (41 bp):
GGCAAGCATATACATAAATAATTTTATTTTCTAGATTATTA
Found at i:10888212 original size:27 final size:26
Alignment explanation
Indices: 10888155--10888213 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
10888145 CATTTTGTCC
*
10888155 CTTCCTTTTTTTTTTCCTTCTCTTTT
1 CTTCTTTTTTTTTTTCCTTCTCTTTT
*
10888181 C-TCTTTTTTCTTTTTTCTT-TCTTCTT
1 CTTCTTTTTT-TTTTTCCTTCTCTT-TT
10888207 CTTCTTT
1 CTTCTTT
10888214 CTCCCTTTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 11 0.39
26 12 0.43
27 5 0.18
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (26 bp):
CTTCTTTTTTTTTTTCCTTCTCTTTT
Found at i:10888227 original size:33 final size:31
Alignment explanation
Indices: 10888147--10888241 Score: 79
Period size: 33 Copynumber: 3.1 Consensus size: 31
10888137 ACCGACACCA
*
10888147 TTTTGTCCC-TTCCTTTTTTTTTTCCTTCTC
1 TTTTCTCCCTTTCCTTTTTTTTTTCCTTCTC
** * *
10888177 TTTTCTCTTTTTTCTTTTTTCTTT-CTTCTTC
1 TTTTCTCCCTTTCCTTTTTTTTTTCCTTC-TC
* *
10888208 TTCTTTCTCCCTTTCCTTTTCTTTTTACTT-TC
1 -T-TTTCTCCCTTTCCTTTTTTTTTTCCTTCTC
10888240 TT
1 TT
10888242 CCGTTTCCAA
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
30 11 0.22
31 15 0.30
32 3 0.06
33 18 0.36
34 3 0.06
ACGTcount: A:0.01, C:0.27, G:0.01, T:0.71
Consensus pattern (31 bp):
TTTTCTCCCTTTCCTTTTTTTTTTCCTTCTC
Found at i:10888814 original size:2 final size:2
Alignment explanation
Indices: 10888809--10888845 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
10888799 ACACACATGC
10888809 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10888846 CATAGTGTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10890560 original size:17 final size:18
Alignment explanation
Indices: 10890530--10890565 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
10890520 TTCAATCCAA
10890530 TTTTATAAAGTTAAATTT
1 TTTTATAAAGTTAAATTT
10890548 TTTTATAAA-TTAAATTT
1 TTTTATAAAGTTAAATTT
10890565 T
1 T
10890566 AAATTAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (18 bp):
TTTTATAAAGTTAAATTT
Found at i:10890669 original size:12 final size:13
Alignment explanation
Indices: 10890652--10890700 Score: 66
Period size: 12 Copynumber: 3.8 Consensus size: 13
10890642 TATTATATAA
10890652 AAATTATTT-TTT
1 AAATTATTTATTT
10890664 AAATTATTTATTT
1 AAATTATTTATTT
10890677 -AATTATTTATTT
1 AAATTATTTATTT
*
10890689 ATATATATTTAT
1 AAAT-TATTTAT
10890701 ATAATTATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
12 21 0.64
13 5 0.15
14 7 0.21
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
AAATTATTTATTT
Found at i:10890686 original size:16 final size:16
Alignment explanation
Indices: 10890668--10890724 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
10890658 TTTTTTAAAT
*
10890668 TATTTATTTAATTATT
1 TATTTATTTAATTATA
*
10890684 TATTTATATATATTTATA
1 TATTTAT-T-TAATTATA
* *
10890702 TAATTATATAATTATA
1 TATTTATTTAATTATA
10890718 TATTTAT
1 TATTTAT
10890725 GTTTAAAAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
16 20 0.61
17 1 0.03
18 12 0.36
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTTATTTAATTATA
Found at i:10890717 original size:8 final size:8
Alignment explanation
Indices: 10890671--10890724 Score: 54
Period size: 8 Copynumber: 6.5 Consensus size: 8
10890661 TTTAAATTAT
*
10890671 TTATTTAA
1 TTATATAA
* *
10890679 TTATTTAT
1 TTATATAA
10890687 TTATATATA
1 TTATATA-A
10890696 TTTATATAA
1 -TTATATAA
10890705 TTATATAA
1 TTATATAA
*
10890713 TTATATAT
1 TTATATAA
10890721 TTAT
1 TTAT
10890725 GTTTAAAAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
8 32 0.80
9 1 0.03
10 7 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TTATATAA
Found at i:10890742 original size:20 final size:20
Alignment explanation
Indices: 10890717--10890763 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
10890707 ATATAATTAT
10890717 ATATTTAT-GTTTAAAAGATA
1 ATATTTATAGTTTAAAA-ATA
*
10890737 ATATTTTATATTTTAAAAATA
1 ATA-TTTATAGTTTAAAAATA
10890758 ATATTT
1 ATATTT
10890764 TATTAATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 6 0.25
21 11 0.46
22 7 0.29
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (20 bp):
ATATTTATAGTTTAAAAATA
Found at i:10890758 original size:21 final size:22
Alignment explanation
Indices: 10890726--10890766 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
10890716 TATATTTATG
10890726 TTTAAAAGATAATATTTTATAT
1 TTTAAAAGATAATATTTTATAT
10890748 TTTAAAA-ATAATATTTTAT
1 TTTAAAAGATAATATTTTAT
10890767 TAATTTCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TTTAAAAGATAATATTTTATAT
Found at i:10891288 original size:27 final size:27
Alignment explanation
Indices: 10891258--10891309 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
10891248 TAAAGAAATT
* *
10891258 AAAAAATATTAACATAAAAATTTTTTC
1 AAAAAAAATTAACATAAAAAATTTTTC
* *
10891285 AAAAAAAATTAGCTTAAAAAATTTT
1 AAAAAAAATTAACATAAAAAATTTT
10891310 ATATTTTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.35
Consensus pattern (27 bp):
AAAAAAAATTAACATAAAAAATTTTTC
Found at i:10892778 original size:23 final size:23
Alignment explanation
Indices: 10892752--10892809 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 23
10892742 AATTCATGAA
10892752 TTTATTTTGTAAAGATTTTATTT
1 TTTATTTTGTAAAGATTTTATTT
* ** *
10892775 TTTAATTT-TAAATTTTTTCTTT
1 TTTATTTTGTAAAGATTTTATTT
10892797 TGTT-TTTTGTAAA
1 T-TTATTTTGTAAA
10892810 TAAAAAGGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
22 15 0.54
23 13 0.46
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (23 bp):
TTTATTTTGTAAAGATTTTATTT
Found at i:10892882 original size:26 final size:23
Alignment explanation
Indices: 10892852--10892917 Score: 77
Period size: 26 Copynumber: 2.9 Consensus size: 23
10892842 AATAAGTCAC
10892852 TCAGTAAAATAAATGAATAATAAAAA
1 TCAGTAAAAT-AAT-AATAA-AAAAA
10892878 TCAGTAAAATAATAATAAAAAAA
1 TCAGTAAAATAATAATAAAAAAA
10892901 T-AG--AAATAA-AATAAAAA
1 TCAGTAAAATAATAATAAAAA
10892918 TAATAACTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
22 2 0.05
23 6 0.15
24 5 0.12
25 3 0.08
26 10 0.25
ACGTcount: A:0.70, C:0.03, G:0.06, T:0.21
Consensus pattern (23 bp):
TCAGTAAAATAATAATAAAAAAA
Found at i:10892902 original size:14 final size:14
Alignment explanation
Indices: 10892883--10892923 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
10892873 AAAAATCAGT
10892883 AAAATAATAATAAA
1 AAAATAATAATAAA
10892897 AAAATAGA-AATAAA
1 AAAATA-ATAATAAA
10892911 ATAAA-AATAATAA
1 A-AAATAATAATAA
10892924 CTTAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 1 0.04
14 19 0.79
15 4 0.17
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (14 bp):
AAAATAATAATAAA
Found at i:10895595 original size:226 final size:232
Alignment explanation
Indices: 10894938--10895744 Score: 636
Period size: 229 Copynumber: 3.5 Consensus size: 232
10894928 AAAAATAATT
* * * * * ** * * *
10894938 ATAAAAATATATTATTATAATATAAATAATTATGA-TGGCAATGTAAAATTTTAATTAATTATTA
1 ATAATAATAAATTATTATAACATAAATAATTA-CATTAGCAACATAAAATTTTAACTACTTAATA
* * * * * *
10895002 TTTTTGTATATATAT-AAGAAAAATAGCTAAAA-ATTAAAAAAATAAAATA-ATAATATAAACAA
65 TTTTT-TAAATATATAAAG-AATATAGCTAAAATA-T-AAAAAA-CAAATAGGTAATGTAAAAAA
* * * * * ** * ** *
10895064 GTGAGAAAAAAATATAAAATTAGTATTATTTGACGTAAAATGAGTACGAAATGTCGCAACATATT
125 GTGA-AAAAAAATGTAAAATTAATATAATTTGACGTAAAATAAATAAAAAATATCATAACATACT
* * ** * *
10895129 AAAGAAGAGTTATGATAA-TCTAAATGTAATGAAATA-TAATAACAACT
189 AAA-AA-A--TATGACAATTTTAAACATAATGAAA-AGTAAGAACAACC
* * * * * ** *
10895176 ATAAGAATATATTATTGTAACATAAATAATTATATTAGCTATTTAAAATTTTAACTACTTATTAT
1 ATAATAATAAATTATTATAACATAAATAATTACATTAGCAACATAAAATTTTAACTACTTAATAT
*
10895241 TTTTTAAATATATAAAGAATATAGCTAAAATGTAAAAAACAAATAGGTAATGTAAAAAAGTGAAA
66 TTTTTAAATATATAAAGAATATAGCTAAAATATAAAAAACAAATAGGTAATGTAAAAAAGTGAAA
* * * *
10895306 AAAAATGTAAAATTAATATAATTTGATGTAACATAAATAAAAAATGTCATAACATATTAAAAAA-
131 AAAAATGTAAAATTAATATAATTTGACGTAAAATAAATAAAAAATATCATAACATACTAAAAAAT
* * *
10895370 ATGATAATTTTAAACATAATTAAAAGTAAGAACAATC
196 ATGACAATTTTAAACATAATGAAAAGTAAGAACAACC
* ** * *
10895407 ATAA-AATTAAATTATTGTAATGTAAATAATTACGTT-GCCAACATAAAATTTTAAGTA-TTAAT
1 ATAATAA-TAAATTATTATAACATAAATAATTACATTAG-CAACATAAAATTTTAACTACTTAAT
* *
10895469 -TTTTTTAAATATATAAA-AA-ATAGCTAAAATATAAAAAAC-AATTGGTAATGTAAACAAGTGA
64 ATTTTTTAAATATATAAAGAATATAGCTAAAATATAAAAAACAAATAGGTAATGTAAAAAAGTGA
* * ** * * * *
10895530 AAAGAAATGTAAAATTAATATTATTTGACGTAAAATTGATATAAATTATCATAATATGCTAAAAA
129 AAAAAAATGTAAAATTAATATAATTTGACGTAAAATAAATAAAAAATATCATAACATACTAAAAA
* * *
10895595 ATTTATGACAATTTTAAACGTAATGAAAATTAATAACAACC
194 A--TATGACAATTTTAAACATAATGAAAAGTAAGAACAACC
* * * * * *
10895636 ATAATAATATATTATTATAACATAAATAATTATATTAGTAACATAAAATTTTAATTAATTATTAT
1 ATAATAATAAATTATTATAACATAAATAATTACATTAGCAACATAAAATTTTAACTACTTAATAT
* * * * * * *
10895701 TTTATGAATATCTAAAAAAAATAGTTAGAAAT-TAAAAAATAAAT
66 TTTTTAAATATATAAAGAATATAGCTA-AAATATAAAAAACAAAT
10895745 TGATATCATA
Statistics
Matches: 471, Mismatches: 79, Indels: 42
0.80 0.13 0.07
Matches are distributed among these distances:
226 74 0.16
227 19 0.04
228 2 0.00
229 92 0.20
230 22 0.05
231 77 0.16
232 2 0.00
233 14 0.03
234 9 0.02
235 57 0.12
236 20 0.04
237 22 0.05
238 61 0.13
ACGTcount: A:0.53, C:0.05, G:0.08, T:0.34
Consensus pattern (232 bp):
ATAATAATAAATTATTATAACATAAATAATTACATTAGCAACATAAAATTTTAACTACTTAATAT
TTTTTAAATATATAAAGAATATAGCTAAAATATAAAAAACAAATAGGTAATGTAAAAAAGTGAAA
AAAAATGTAAAATTAATATAATTTGACGTAAAATAAATAAAAAATATCATAACATACTAAAAAAT
ATGACAATTTTAAACATAATGAAAAGTAAGAACAACC
Found at i:10895659 original size:21 final size:20
Alignment explanation
Indices: 10895635--10895685 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
10895625 TAATAACAAC
10895635 CATAATAATATATTATTA-TAA
1 CATAATAAT-TA-TATTAGTAA
10895656 CATAAATAATTATATTAGTAA
1 CAT-AATAATTATATTAGTAA
10895677 CATAA-AATT
1 CATAATAATT
10895686 TTAATTAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 4 0.14
20 7 0.25
21 11 0.39
22 6 0.21
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (20 bp):
CATAATAATTATATTAGTAA
Found at i:10896139 original size:237 final size:233
Alignment explanation
Indices: 10894712--10896186 Score: 1019
Period size: 237 Copynumber: 6.3 Consensus size: 233
10894702 TTGTAAGAAA
* *
10894712 ATATTATTGTAA-AGTAAATAATTATGTTGACAACTTTAAATTTTAATTAATTATTTTTCTTGTA
1 ATATTATTGTAACA-TAAATAATTATGTTGACAACTTAAAATTTTAATTAATTATTATT-TTGTA
* ** * *
10894776 AACATTTAAGAAAAATAACTAAAAATTAAAAAAT-AAATTGATAATGTAAACAAATGAG---AAA
64 AATATAAAAG-AAAATAGC-AAAAATTAAAAAATAAAATTGATAATGTAAACAAGTGAGAAAAAA
* * * * * * * *
10894837 TGTAAAATTAGTATAATTTGATGTGAAATAGGTAAGAAGTATCGCAAAATACTAAGAAAGAGCTA
127 TGTAAAATTAGTATAATTTGACGTAAAATAGATAAGAAATATCACAACATACTAA-AAAAAGTTA
** * **
10894902 T-AGCAATTCTAAATGTAATGGAAAGTAAAAATAATTATAAAAAT
191 TGA-CAATTCTAAACATAAT-GAAAGTAAAAACAACCATAAAAAT
* * * *
10894946 ATATTATTATAATATAAATAATTATGATGGCAA-TGTAAAATTTTAATTAATTATTATTTTTGTA
1 ATATTATTGTAACATAAATAATTATGTTGACAACT-TAAAATTTTAATTAATTATTA-TTTTGTA
* * * *
10895010 TATATATAAGAAAAATAGCTAAAAATTAAAAAAATAAAA-TAATAATATAAACAAGTGAGAAAAA
64 AATATAAAAG-AAAATAGC-AAAAATT-AAAAAATAAAATTGATAATGTAAACAAGTGAG-AAAA
* * * * * * *
10895074 AATATAAAATTAGTATTATTTGACGTAAAAT-GAGTACGAAATGTCGCAACATATTAAAGAAGAG
125 AATGTAAAATTAGTATAATTTGACGTAAAATAGA-TAAGAAATATCACAACATACTAAA-AAAAG
* ** * *
10895138 TTATGATAA-TCTAAATGTAATGAAA-TATAATAACAACTATAAGAAT
188 TTATGACAATTCTAAACATAATGAAAGTA-AA-AACAACCATAAAAAT
* * * * * *
10895184 ATATTATTGTAACATAAATAATTATATT-AGCTATTTAAAATTTTAACTACTTATTATTTTTTAA
1 ATATTATTGTAACATAAATAATTATGTTGA-CAACTTAAAATTTTAATTAATTATTATTTTGTAA
* * * * * * *
10895248 ATATATAAAGAATATAGCTAAAATGTAAAAAA-CAAATAGGTAATGTAAAAAAGTGAAAAAAAAT
65 ATATA-AAAGAAAATAGCAAAAAT-TAAAAAATAAAATTGATAATGTAAACAAGTGAGAAAAAAT
* * * * * * * *
10895312 GTAAAATTAATATAATTTGATGTAACATAAATAAAAAATGTCATAACATA-TTAAAAAA---ATG
128 GTAAAATTAGTATAATTTGACGTAAAATAGATAAGAAATATCACAACATACTAAAAAAAGTTATG
* * * * * *
10895373 ATAATTTTAAACATAATTAAAAGTAAGAACAATCATAAAATT
193 ACAATTCTAAACATAA-TGAAAGTAAAAACAACCATAAAAAT
* ** * * * *
10895415 AAATTATTGTAATGTAAATAATTACGTTGCCAACATAAAATTTTAAGT-ATTAATT-TTTT-TAA
1 ATATTATTGTAACATAAATAATTATGTTGACAACTTAAAATTTTAATTAATT-ATTATTTTGTAA
* * * *
10895477 ATATATAA-AAAATAGCTAAAA-TATAAAAA-ACAATTGGTAATGTAAACAAGTGA-AAAGAAAT
65 ATATAAAAGAAAATAGCAAAAATTA-AAAAATAAAATTGATAATGTAAACAAGTGAGAAA-AAAT
* * * * * * * *
10895538 GTAAAATTAATATTATTTGACGTAAAATTGATATA-AATTATCATAATATGCT-AAAAAATTTAT
128 GTAAAATTAGTATAATTTGACGTAAAATAGATA-AGAAATATCACAACATACTAAAAAAAGTTAT
* * * * *
10895601 GACAATTTTAAACGTAATGAAAATTAATAACAACCATAATAAT
192 GACAATTCTAAACATAATG-AAAGTAAAAACAACCATAAAAAT
* * * * *
10895644 ATATTATTATAACATAAATAATTATATT-AGTAACATAAAATTTTAATTAATTATTATTTTATGA
1 ATATTATTGTAACATAAATAATTATGTTGA-CAACTTAAAATTTTAATTAATTATTATTTTGT-A
* * * * *
10895708 ATATCTAAAA-AAAATAGTTAGAAATTAAAAAAT-AAATTGAT-ATCATAAACAAGTGAGAACAA
64 A-ATATAAAAGAAAATAG-CAAAAATTAAAAAATAAAATTGATAAT-GTAAACAAGTGAGAAAAA
* ** * ** * * *
10895770 ATGT-GAATTAGTACCATTT-AGCATAAAATAGATGAA-AAAGTATTGCAATACATTAAAAAAGA
126 ATGTAAAATTAGTATAATTTGA-CGTAAAATAGAT-AAGAAA-TATCACAACATACTAAAAAA-A
* * * *
10895832 GCTATGACATTTGTAAATATAATGACAAGTAAAAACAACCATAAAAA-
187 GTTATGACAATTCTAAACATAATGA-AAGTAAAAACAACCATAAAAAT
* ** * * *
10895879 ATTCTTATTGTAAGGGT-AATAATTTTGTTGACAACTTAAAATTTTAATTATTTATTATTCATGT
1 A-TATTATTGTAA-CATAAATAATTATGTTGACAACTTAAAATTTTAATTAATTATTATT-TTGT
**
10895943 AAATATAAAAGAAAATTAGCAAAAATTAAAAAATAAAATTGATAATGTAAACAAGTGAGAAGTAA
63 AAATATAAAAGAAAA-TAGCAAAAATTAAAAAATAAAATTGATAATGTAAACAAGTGAGAAAAAA
* * * * * * *
10896008 CGTAAAATTAGTATAATTTGGA-ATAAAATAGGTTAGAATTATCATAACACACTAAGAAAAAGTT
127 TGTAAAATTAGTATAATTT-GACGTAAAATAGATAAGAAATATCACAACATACTAA-AAAAAGTT
** * * * * **
10896072 ACAACAATTGTAAACATGATTAAAGGTAAGAAC-ATTAGTAAAAAT
190 ATGACAATTCTAAACATAATGAAA-GTAAAAACAACCA-TAAAAAT
*
10896117 ATATTATTGTAACATAAATAATTATGATGACAA-TGTAAAATTTTAATTAATTATTATTATTGTA
1 ATATTATTGTAACATAAATAATTATGTTGACAACT-TAAAATTTTAATTAATTATTATT-TTGTA
*
10896181 TATATA
64 AATATA
10896187 TGTTAGCTTT
Statistics
Matches: 983, Mismatches: 190, Indels: 133
0.75 0.15 0.10
Matches are distributed among these distances:
225 5 0.01
226 74 0.08
227 14 0.01
228 3 0.00
229 84 0.09
230 20 0.02
231 60 0.06
232 8 0.01
233 45 0.05
234 118 0.12
235 93 0.09
236 137 0.14
237 158 0.16
238 105 0.11
239 57 0.06
240 2 0.00
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.33
Consensus pattern (233 bp):
ATATTATTGTAACATAAATAATTATGTTGACAACTTAAAATTTTAATTAATTATTATTTTGTAAA
TATAAAAGAAAATAGCAAAAATTAAAAAATAAAATTGATAATGTAAACAAGTGAGAAAAAATGTA
AAATTAGTATAATTTGACGTAAAATAGATAAGAAATATCACAACATACTAAAAAAAGTTATGACA
ATTCTAAACATAATGAAAGTAAAAACAACCATAAAAAT
Found at i:10897138 original size:22 final size:22
Alignment explanation
Indices: 10897113--10897156 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
10897103 TTTGATTCCA
*
10897113 GCCAAAAAATCAATCGATTCTT
1 GCCAAAAAATCAATCAATTCTT
10897135 GCCAAAAAATCAATCAATTCTT
1 GCCAAAAAATCAATCAATTCTT
10897157 TTACAAAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.27
Consensus pattern (22 bp):
GCCAAAAAATCAATCAATTCTT
Found at i:10898211 original size:18 final size:18
Alignment explanation
Indices: 10898178--10898212 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10898168 GGGACAAAAT
*
10898178 ACATGATACCACTAATAC
1 ACATGATACCAATAATAC
*
10898196 ACATGATACTAATAATA
1 ACATGATACCAATAATA
10898213 TCAAGAGTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.20, G:0.06, T:0.26
Consensus pattern (18 bp):
ACATGATACCAATAATAC
Found at i:10899525 original size:2 final size:2
Alignment explanation
Indices: 10899518--10899554 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
10899508 GCACTCAAAG
*
10899518 TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10899555 CTTAAACACA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:10904836 original size:132 final size:132
Alignment explanation
Indices: 10904700--10904963 Score: 519
Period size: 132 Copynumber: 2.0 Consensus size: 132
10904690 ATTTTAGCAC
10904700 ATTAAAAATCATATTAATAAACCATATTTTGTATTTAATACAATAATTATAAAACATAAGAACAT
1 ATTAAAAATCATATTAATAAACCATATTTTGTATTTAATACAATAATTATAAAACATAAGAACAT
10904765 AAAAACAATGCACTAAATTATTCTTTTTGCAAAATCATAATCAAGCTTATTCAACTTAATGTTTT
66 AAAAACAATGCACTAAATTATTCTTTTTGCAAAATCATAATCAAGCTTATTCAACTTAATGTTTT
10904830 GT
131 GT
10904832 ATTAAAAATCATATTAATAAACCATATTTTGTATTTAATACAATAATTATAAAACATAAGAACAT
1 ATTAAAAATCATATTAATAAACCATATTTTGTATTTAATACAATAATTATAAAACATAAGAACAT
*
10904897 AAAAACAATGCACTAAATTATTCTTTTTGCAAAATCATAATCAAGCTTATTCAGCTTAATGTTTT
66 AAAAACAATGCACTAAATTATTCTTTTTGCAAAATCATAATCAAGCTTATTCAACTTAATGTTTT
10904962 GT
131 GT
10904964 TATTTCAAAA
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
132 131 1.00
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.37
Consensus pattern (132 bp):
ATTAAAAATCATATTAATAAACCATATTTTGTATTTAATACAATAATTATAAAACATAAGAACAT
AAAAACAATGCACTAAATTATTCTTTTTGCAAAATCATAATCAAGCTTATTCAACTTAATGTTTT
GT
Found at i:10905457 original size:211 final size:212
Alignment explanation
Indices: 10905147--10905530 Score: 502
Period size: 211 Copynumber: 1.8 Consensus size: 212
10905137 TAATAGATGA
* ** * * * **
10905147 TAAGAACAACTGTAAGAAGGTAATATTCTACCATAAATATTTAAGTAGACAATGTAAAATTTTAA
1 TAAGAACAACTATAAGAAAATAATATTATAACATAAATAATTAAGTAGACAACATAAAATTTTAA
* * ** * *
10905212 TTAATTATTATTTTTATAAGTATATAAGAAAAATATCTAATAATTAAAAAGTAAATAAGTAA-CT
66 TTAATTATTATTTTTATAAATATAAAAGAAAAATAAATAAAAATTAAAAAGCAAATAAGTAATCT
* *
10905276 AAGCAAATAAGAAAAACATAAAATTTGTATCACTTGGCATAAAACAAGAAAGAGTTATGACAATT
131 AAGCAAATAAGAAAAACACAAAATTTGTATCACTTGCCATAAAACAAGAAAGAGTTATGACAATT
10905341 CTAAATGTAATGAAAGG
196 CTAAATGTAATGAAAGG
* * *
10905358 TAAGAACAACTATAAGAAAATATTATTATAATATAAATAATTAAGTAGATAACAT-AAATTTCTA
1 TAAGAACAACTATAAGAAAATAATATTATAACATAAATAATTAAGTAGACAACATAAAATTT-TA
* * *
10905422 ATTGATTATTGTTTTTATAAATATAAAAGAAAAATAAATAAAAATTAAAAAGCAAATAAGTAATG
65 ATTAATTATTATTTTTATAAATATAAAAGAAAAATAAATAAAAATTAAAAAGCAAATAAGTAATC
* * * * *
10905487 TAAGCAAGTGAGGAAAACGCAAAATTTGTATCATTTGCCATAAA
130 TAAGCAAATAAGAAAAACACAAAATTTGTATCACTTGCCATAAA
10905531 GTGGGCAAAA
Statistics
Matches: 144, Mismatches: 27, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
210 6 0.04
211 101 0.70
212 37 0.26
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.30
Consensus pattern (212 bp):
TAAGAACAACTATAAGAAAATAATATTATAACATAAATAATTAAGTAGACAACATAAAATTTTAA
TTAATTATTATTTTTATAAATATAAAAGAAAAATAAATAAAAATTAAAAAGCAAATAAGTAATCT
AAGCAAATAAGAAAAACACAAAATTTGTATCACTTGCCATAAAACAAGAAAGAGTTATGACAATT
CTAAATGTAATGAAAGG
Found at i:10907315 original size:19 final size:19
Alignment explanation
Indices: 10907291--10907336 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
10907281 TTGCTCTACC
10907291 ATTTTTCATT-ATTTTTCTA
1 ATTTTTCATTAATTTTTC-A
*
10907310 ATTTTT-TTTAATTTTTCA
1 ATTTTTCATTAATTTTTCA
*
10907328 ATTTCTCAT
1 ATTTTTCAT
10907337 GAGATATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTTTTCATTAATTTTTCA
Found at i:10907546 original size:21 final size:21
Alignment explanation
Indices: 10907507--10907546 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10907497 TCTATATATA
*
10907507 TATATATATTATTTATTTATT
1 TATATATACTATTTATTTATT
10907528 TATATATACTAGTTT-TTTA
1 TATATATACTA-TTTATTTA
10907547 CCTGTGTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (21 bp):
TATATATACTATTTATTTATT
Found at i:10908522 original size:16 final size:17
Alignment explanation
Indices: 10908482--10908524 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
10908472 ATACTTACAG
10908482 ATAAAGAATATGAAAAA
1 ATAAAGAATATGAAAAA
** *
10908499 ATCTAGAATA-GAAAGA
1 ATAAAGAATATGAAAAA
10908515 ATAAAGAATA
1 ATAAAGAATA
10908525 AGTTTTGGAT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.65, C:0.02, G:0.14, T:0.19
Consensus pattern (17 bp):
ATAAAGAATATGAAAAA
Found at i:10908850 original size:17 final size:18
Alignment explanation
Indices: 10908828--10908861 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
10908818 TTTTTCAAAG
10908828 TAATATTTAAT-ATTTAT
1 TAATATTTAATGATTTAT
10908845 TAATATTTAATGATTTA
1 TAATATTTAATGATTTA
10908862 GTTTAAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (18 bp):
TAATATTTAATGATTTAT
Found at i:10913470 original size:26 final size:26
Alignment explanation
Indices: 10913433--10913485 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10913423 GTTGACATAG
10913433 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
10913459 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10913485 G
1 G
10913486 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10915214 original size:26 final size:26
Alignment explanation
Indices: 10915184--10915236 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10915174 GTTGACTTAG
* *
10915184 GCATACGGGGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10915210 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10915236 G
1 G
10915237 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10916116 original size:26 final size:26
Alignment explanation
Indices: 10916087--10916139 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10916077 GTTGACTCAG
10916087 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
10916113 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10916139 G
1 G
10916140 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10916231 original size:903 final size:903
Alignment explanation
Indices: 10914323--10929381 Score: 17743
Period size: 903 Copynumber: 16.8 Consensus size: 903
10914313 GTTGACTTAG
* ** * * * * * *
10914323 GCATATGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCAAGGTTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
10914388 CTC-AGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCCGGAGCATCACCAGA
66 CTCGA-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-CCGGAGCATCGCCGGA
* * * *
10914452 AAACTTGACCGACGTCATTGGGGTTCCGACGAT--------CGGGGG-GTGTGCGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGTGCGCACATGATGT
* * *
10914508 GAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGGGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
10914573 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
10914638 TGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
10914703 GTGGATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCTAAAAATCGTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * **
10914768 ATTTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
10914833 T-CTAATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAATAATGG
519 TGC-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
10914897 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAACTACTACCATATCGATCCACGGCTTG
583 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
10914962 CGCATCCCGTCTCTCTGACCGGTGTAGT--------GCCCGCTCGCCCGCTCATTTCGTCCGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
10915019 GCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTG-TGCTAGCAGG
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC-AGCAGG
* * * * *
10915083 ATCGGCAGCACGCAGAGGGGGACCCGATCAATCCCCGGCTTGCCCATCCTGCCCCTCTGGCCGGT
777 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
10915148 TGAGTAG-CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGGGTTCATTTCCAGTCTAA
842 TGAG-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
10915210 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
10915275 CTCTAGCATGTGTTGGTGCCCCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCGA-CGTCGAAA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGC-ATCGCCGGAG
* *
10915339 AACCTGACCGGCAGCATTGGGGTTCCGACAATCGGGGGTGCCAGGGGGTGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCC-GGGGGTGTGTGCGCACATGATG
*
10915404 TGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
10915469 ACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
10915534 ATGGGGACACTTTTTTGAAATGGTCATAACATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
10915598 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
10915663 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATAAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
10915728 TTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCGTTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
10915793 CATTGGCAAGTAAAAATATGAAGATGTGCCTAAACCCA-CTACCAACCTATCGATCCACGGCTTG
583 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
10915857 CGCATCCCGACTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCGCGCTCGTTTCATCGATTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * * *
10915922 GCTTAGGCATTCGGAGTTCATTCCCAGTCTAAAATCGGACCTGATCGAGGGTTGCGACAGTAAGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * ** * * * *
10915987 TCGGTAGCATGTAGAGGGGGACTTGGA-CTATCCCCGGCTTACGCATCCCGCCCCTTTGGTCGGC
778 TCGGCAGCACGCAGAGGGGGAC-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
10916051 TGAGCACCCGCACGCTCGTTCCGTGGGTTGACTCAGGCATACGGAGTTCATTCCCAATCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
10916113 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
10916178 CTCGAGCATGTGTTGGTGCCACTTTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * * * *
10916243 ACCTGACCAGCGACATTGGGGTTCCGGCGCTCGGGGGGGCTGGGGGGCAGTGTACACACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGC-CGGGGG-TGTGTGCGCACATGATG
* * *
10916308 TACGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
10916373 ACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTTCCAGTAGCCATGAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
10916438 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGATTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
10916503 TTTGCATGCCAA-AAAAAGTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAA
388 TGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** ** ** *
10916567 AAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATAAGTCAT
452 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
10916632 CTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
10916697 GCATTGCCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTT
582 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
10916762 GCGCATCCCGTCTCTCTGGCTGGCG-A-----AG--CGCCCGCCCACCCGCTCGTTTCGTCAGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
10916819 GGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* *** * * *
10916884 ATCGACAGCACGCTA-AGGGGGACCCGGTTGATCCCTGGCTTGCGTATCCCGCCCCTCTGGTCGG
777 ATCGGCAGCACGC-AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
10916948 TTGAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAC
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
10917011 GCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
10917076 CTCGGGCATGTGTTGGTGCGACATTTTTCTTCGTCGGGACACCATCGTCGGAGCAT-GCCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
10917140 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGTGTGTGCGCACATGATGTG
* * *
10917205 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTGAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
10917270 ACCCCCTTAAAGAGCTTTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
10917335 GGGGACACTTTTTTCAAATGGTCACAGAATCTTGTGCAATTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
10917400 TGCACGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTTGGGTCAAAACTCCTT-CAAAAA
390 TGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
10917464 AATTTTTAAAAAATCAT-GAACCGTAAAAA-ATTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
454 AA-TTTTAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * * *
10917527 CCTGCCATGAAACTTCACGTGAAGGCTTCAGGGAACATTGTATGAATCTACAAGACATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
10917592 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTT
582 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
10917657 GCGCATCCAGTCTCTCTGGCCGGCGTGGTGCCCACCCGCCCGCCCGTCCGCTCGTTTTGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * *
10917722 GGCTTAGGCATACAGA-TGTCATTCCCCGTCTAAGATCAGATCGGATCGAGGGTTGCGGCCGCAG
712 GGCTTAGGCATACGGAGT-TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
* * * * *** *
10917786 GAGCAGCAGCACGCAGAGGGGGACCCGATCGAT-CTCGGCTTGTTAATCCCGCCCCTCTGGCCGA
776 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
10917850 CTAAACGCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
10917913 ACATAC-GAATTCATTTCCCAGTCTAAGATCTGACCAGACCGAGGGTTGCGACAGCACATCCTGG
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
10917977 GCTCTG-GCATGTGCTGCTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGAA
65 GCTC-GAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * * *
10918041 GAACCTGACCGGCGGCATTAGGGTTTCGATGATCGGGGGGGCCGAGGGGTGT-T-TGCACATGAT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGTGTGTGCGCACATGAT
*
10918104 GTGCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
10918169 CACACCCCCTTAACGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCAGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
10918234 AATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
10918298 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAAACTCCTTTCGA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGA
* *
10918363 AAAAATTTTAAAAAATCACGAACCGTAAAAAGTTTCAAAAATCGTG-AAAATAGAAAATGAGTCG
451 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
10918427 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
10918491 GGCATTGGTAGGTAGAAATATGAAGATGTACCTAAACCCACCTACCA-CCAACCGATCCACGGCT
581 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** *
10918555 TGCGCATCTCGTCTCTCTGGTCGGCGTAGTGGTCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
** * * * * *
10918620 TGGCTTAGGCATATAGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGTGGGTTGCGGTAGTAG
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
*** * * * * ** * * *
10918685 GATCAATAACATGCAGAGGGGTATCCGGTCGATCCCGGGCTTGCGCATCCCACCCCTCTGGCTGG
776 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
10918750 CTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
10918813 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
10918878 CTCGGGCATGTGCTGGTGCCACATTTATATTCACCGGGGCACCATCGCCGGAGCATCACCGAAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
10918943 ACCTGACAGGCGGCATTGGGGTTCCGGCGATCGGAGGGGCCAGGGGGT-TGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGTGTGTGCGCACATGATGT
* * *
10919007 GCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATGAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
10919072 TACCCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTACCAATAGCAATTAAAGTGTCTGAA
259 CA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
10919137 ATGGGGACACTTTTTTCAAATGG-CTACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTT
323 ATGGGGACACTTTTTTCAAATGGTC-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * ** * * *
10919201 TTGTGCTTGCCGACAAAAATACAAGGATCACGTCTACCAAGTTTGGCTCTAAAAATACTTCC-AA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * ** * *
10919265 AAGACTTTTAAAAAATCTCGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCG
452 AA-AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
10919330 TCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACAATTGTAAGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * *
10919395 GGCATTCACATGCAGAAATATGAAGACGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** **
10919460 TGCGCATCCCGTCTCTCTGGCCGAG-GTAGT----GCCCGCCCTTCCGCCCGCTCGTTTCGTTAG
646 TGCGCATCCCGTCTCTCTGGCCG-GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * *
10919520 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGTA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * * * * *
10919585 GGATCGACAGCACGTAAAGAGGGACCCGACCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCC-
775 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
10919649 GCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
10919713 GCAAACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGGCAGCACATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * *
10919777 CTCGGGCATGTCCTGGTGCCGTATTTTTCTTCGTCAGGGTACCATCACCGGAGCGTCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * ** *
10919842 ACCTGACTGGCAGCATTGGGGTTCCGGTGATCAGGAGGGCCGGGGG-GTGT--G--CA--A--TG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGTGTGTGCGCACATGATGTG
*
10919898 -GA----TGCTGGTACTTGGCCCTTATATTGG--CCC-A-ACCTCGA--AAA-CT-GAG------
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACTCA
* * *
10919944 -ACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAATAGCTATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
10920008 TGGGGACATTTTTTTCAAATGGTCACAGAATCTTGTGCAATTCAAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
10920073 GTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
10920138 AATTTAAAAAAATCACG--CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
10920201 TCCCATGAAACTTCACGTGAAGGCTTCAGGGAACATTGTATGAATCTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
10920266 ATTGGCAAT-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACCTG
584 ATTGGC-ATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
10920330 CGCATCCAGTCTCTCTGGCCGACGTGGTGCCCTGCCCGCCCACCCACCCGCTCATTTCGTCAGTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * ** * * * *
10920395 GGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATTAGACTGGATCGAGCGTTGCGGCCGTAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* ** * *** *
10920460 ATCAGCAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGTTAATCCTGCCCCTCTGGCCGGC
777 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
10920525 TGAGTGTCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACAGAGTTAATTCCCAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
10920587 GCATAAGGAGTTCATTCCCAATCTAAGCTCTGACCAGACCGAGGGTTGCGGCAACACATCCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
10920652 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
** ** * **
10920717 ACCTGATAGGCGGCATCAGGGTTCCGACGATCGGGGGGGGCTGAGGGG-GTTGTTTGCACATGAT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC--GGGGGGCCG-GGGGTG-TGTGCGCACATGAT
* *
10920781 GTGTGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
10920846 CACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
10920911 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
10920976 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACTAAGTTT-GGGCCAAAACT-CTGTCCAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGA
* * ** * *
10921039 AAAAATTTTAAAAAATCCCAAACCGT-AAAAGTATTTGAAAATTGTGAGAAATAGAAAACGAGTC
451 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGT-TTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
10921103 GTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAA
* * * *
10921168 ATGGCATCGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
579 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
10921233 CTTGTGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTACCTGCCCGCCCGCTCGTTTC
644 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--CC-GCCCGCCCGCTCGTTTC
* * * * *
10921298 GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCCAAGATCAGACCAGACCAAGGGTTGTGA
705 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * * ** *
10921363 CAGCAGGATCGACAGTACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCAT-CCTACCCTTT
770 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
10921427 GGCCGGCTGAACGGCCGCACGCTCGTTTTGTGAGTTGACTT-GGCATACAGAGCTCATTCCCAGT
835 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
10921491 CTAA
900 CTAA
* * * **
10921495 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
10921560 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGTACCATCGCCGAAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
10921625 ACCTTACCGACGGCATTGAGGTTCCGGCGATCGGGGGGGCTGGAGGG-GTTGTGAGCACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGG-GGGTG-TGTGCGCACATGATG
* * * *
10921689 TGCGATGAGTGCTAGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
10921754 GCACCCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTAA
258 ACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
10921819 AATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
10921884 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTCGGACCAAAACTGCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** ** * *
10921949 AAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
452 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
10922014 CTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
10922079 GCATTGGCACT-TAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATTGATCCATGGCT
582 GCATTGGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
10922143 TGCGCATCCTGTCTCTC-GGACGGCGTATTGCCCG-CC-CCCG--C-CCCGCTCATTTCGTCGGT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
*** ** * * *
10922202 TGG-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGTTTTGTGGTAGCAC
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
* * * *
10922266 GATCGGCAGCACGCAGAGAGGGACCCGACCTATCCCCGACTTACGCATCCCGCCCCTCTGGCCGG
776 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
10922331 TTGAGCGCCCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
10922390 -C-TA---AG---A-T--C-G-----GATC-G----GACCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
10922433 CTC-AGGCATGTGCTGGTGTCCGCATTTTTCTTCGTCGGGGTACCATCACCGGAGCATTGCCGAA
66 CTCGA-GCATGTGCTGGTG-CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * *
10922497 GAACCTGACCGACGACATTGGGGTTCCGACAATCGGAGGGGCCGGGGGGTGGGTGTGCGCACATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGT--GTGTGCGCACATG
* * ** * *
10922562 ATGTGCAATGGGTGTTGGTACTTCACCCTTATATTGG-CCCCTATCTCTCATCAAATCTCGAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
10922626 CTCACAGCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
10922691 GAAATGGGGACAC-TTTTT----T--TCATAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * **
10922749 TTTTATGGATACCAACAAAAATACAAGGATCACGTCTACCAAGATTGGGGAAAAAACTCC-T---
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
10922810 --AAAATTTTAAAAAATCTCGAACTAG-AAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGT
450 AAAAAATTTTAAAAAATCTCGAAC-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
10922872 CGTCTTGCCATGAAACTTCACATGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
10922937 ATGGCATTAGCATGCAGTAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
579 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** * * *** ** *
10923002 CTTGCGCATCCCGTCTCTCTAACCGACGTAATGCCCG-CCATACG-GTGCCGCGCTCGTTTCAAT
644 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC-CGCTCGTTTC-GT
* * ** * *
10923065 CGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTGTGGCA
707 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
* ** * **
10923130 GCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCTACCCCTCTGG
772 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* *
10923195 CCGGCTAAGCTCCCGCACGCTC-TTTCGT--G--G--TT-----T-----G---A----C--T-T
837 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
10923233 AA
902 AA
* * * *
10923235 GCATACGGAGTTTATTCCCAGTCAAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
10923300 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATTGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
10923365 ACATGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGTGTGTGCGCACATGATGTG
* **
10923430 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
10923495 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCGATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
10923560 GGGGACAC-TTTTTCAAATGGGCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
10923624 TGCATGCCAACAAAAATACAAGAATCATGTTTACCAAGTTTGGGGCCAAAACGCATTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
10923689 ATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAGAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
10923754 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** *
10923819 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
585 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * * * *
10923884 CATCCCATCTCTCTGGATGGCATAGTGCCCGCTCGCCCCCCCCGCCCGCTCGTTTTGGTCGGTCG
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCCGCCCGCCCGCTCG-TTTCGTCGGTTG
* * * * * *** *
10923949 GCCTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACTGAGGGTTGCAATAGCAAGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * *
10924014 TCGGTAGCACGCAGAGGGGGACCCAATCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCT
778 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
10924079 GAGCACCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
10924140 G-AT-C-G-G---------A---T----T--G----GACCGAGGGTTGCAACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
10924179 CTC-AGGCATGTTCTGGTGTCATATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCTGAG
66 CTCGA-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * *
10924243 AACCTAACCAGCGGTATTTGGGTTCCGACGATCGGGGGGGCTAGGGGGT-T-TGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGC-CGGGGGTGTGTGCGCACATGATG
* ** * *
10924306 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCATTATTCCTCATGAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
10924371 ACGCCCCCTGAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCTTTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
10924436 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*** * * ** *
10924501 TGCATATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTTGGGAAAAAACTCCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
10924566 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGTAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
10924631 TTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
10924696 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTG
583 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
10924761 TGCACCCCAGTCTCTCTAGCCAGCGTAGTGCCCTCCCGCCTGCCCGTCCGCTTGTTTCGTCGGTT
648 CGCATCCC-GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *** * * * *
10924826 GGCTTTGGCATACGTAGTTCATTCCTAGTCTAAGATCGGATTGGACTGAGGGTTGTGTCAGTAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * * * *
10924891 ATCGGTAGCATGCAGAGGGGGACCCTG-CCGATCCTCGACTTGTGCATCCCACCCCTCTGGCCTG
777 ATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-G
* * * * * * **
10924955 CTTATTGCCCGCCCACTCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATT
840 ------G-CTG---A-GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
*
10925020 CCAAGTCTAA
894 CCCAGTCTAA
**** * * * * *
10925030 G-ATTGGATCGGACCGAGGGTTACGGCAG--AAAGATCGGCAACACG-CAGAGGG-GGACCTGGC
1 GCA-T--A-CGGA--GTTCATT-C-CCAGTCTAAGATCGG-ACCA-GACCGAGGGTTG--C-GG-
* * ** * *
10925090 CGATCCCCGACTTGTGCATCCCACCGCTCGAGCATGTGCTGGTGTCACATTTTTCCTCGAGCATG
52 C-A---GC-AC--ATGC-T----GGGCTCGAGCATGTGCTGGTGCCACATTTTT-CT---TC--G
* * * * **
10925155 TGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCAACGTTGGAGAACCTGACCGGCGGCATTGGGG
99 T-C-GG-G--GCA----CCATCGCC--GG-AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* *
10925220 TTCCGGCGATCAGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
152 TTCCGACGATCGGGGGGCCGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
10925284 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGAATTTGAG
217 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
10925349 ATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGAACACTTTTTTCAAATGAT
282 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*** *
10925414 CACAAAATCTTGTACACTTCGAGTTTTTCTTTGAATTTTTTTATGCATGCCAACAAAAATACAAG
347 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * *
10925479 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGT
412 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT
* * * ** * *
10925544 AAAAAATTTCAAAAGTCATGAAAAATAGAAAATAAGTCATCTTGCCATGAAACTTCATGTGAAGG
477 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * * *
10925609 CTTAAGGGACGATTATATGAATTTACATGCAACAAAAATGGCATTGGCATGCCA-AAATATGAAG
542 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-TAGAAATATGAAG
* *
10925673 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGT
606 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
** * *
10925738 AAAGTGCCCGCCCGCTCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
671 GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * *
10925803 CCAGTCTAAGAACAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGTAGAGGGGGACC
736 CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
** * * * * * *
10925868 CGACCGATCCCCAACTTGCGCATCTCGCCCTTCTAGCCGGCTAAGCGCCCGCACACTCATTTCGT
801 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
*
10925933 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAA
866 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
10925971 GCATACGGAGTTAATTCCCAGTCTAAGTTCAAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
10926036 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * * * *
10926101 ACCTGACCGGCAGCATTGGAGTTACGATGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGCGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGTGCGCACATGATGTGC
* * * ** *
10926166 GATCGGTGCTAGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATGTCCAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
10926231 CCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTTTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
10926296 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATGTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
10926361 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
10926425 TTTTAAAAAATCCCAAACCG-AAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
456 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
10926489 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGGATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * * * * *
10926554 TGGCACCTAGAAGTATGAAGATGTGCCTAAACCCACTTGCCACCCTATTGATCCATGGCTTGCGA
586 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** ** * * * * * *
10926619 ATCCCGTCTCTCTGGTTGAAGTAGTGCCCGCCTGCTCGCCCACCCACTCGTTTTGTTGGTTGGCT
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
10926684 TAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCG
716 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
** * * * * *
10926749 ATAGCACGCAGAGAGGGACCCAACCGATCCTCGGCTTGCGCATCCTG-CCC-CTGGCCGACTGAG
781 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
10926812 CGTCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
846 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
10926870 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
10926935 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGTAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* **
10927000 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGG-GTGTGTTCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGTGCGCACATGATGTGC
* *
10927064 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
10927129 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
10927194 GGGACACTTTTTTCAAATGGTCATAAAATCTTATACACTTCGAGTTCTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
10927259 CCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * ** ** * *
10927324 TTATAAAAAATCCCAAACCACAAAAAGTTTCAAAAATTATGAAAAATAAAAAACGAGTCCTCTTG
456 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* ** **
10927389 CCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGAAATAAAAATTTCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
10927454 TGGCATGTAGAAATATGAAGATGTGCCTGAACCCACCTACCACCTTATCGATCCACGGCTTGCGC
586 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * ** *
10927519 AGCCCGTCTCTTTGGTCGGCATAGT----GCCCGCCCGCTCGCTTGCTCGTTTCGTCGATTGGCT
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
10927580 TAGGCATACAGAGTTAATTCCCAATCTAAGATCGGACC-GAACCGAGGGTTACGGTAGTAGGATC
716 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATC
* * * * * * * * *
10927644 AGTAGCACGTAGAGAGGGACCTTG-CCGATCCCCGACTTGCGCATCCCACCCCTCTGGCTGGTTG
780 GGCAGCACGCAGAGGGGGACC-CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
10927708 AGCGCCAGCACGCTTGTTTCGTGGGTTGAC-T--G---A--G-G--CA-T---A--C---
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * *
10927748 G---A---AGTTCATTCCCAGTCTAAGATCACACCAGACCGAGGGTTATGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * **
10927807 CTC-AGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGGATCATCGGAG
66 CTCGA-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * * *
10927871 AACCTGACCAGCGGTATTGGGGTTCCGGCGATCGGATGGGCCGGGAG-GTGTGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGTGTGTGCGCACATGATGT
* * * *
10927935 GAGATGGGTGCTGGTGCTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
10928000 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-GTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
10928064 TGGGAACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
10928128 GTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
10928193 AATTTTAAAAAAATCTTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTC
454 AATTTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
10928258 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
10928323 CATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGACTTG
583 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
10928388 CGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCTCCCACCCGCCCGTTCGTTTCGTCAGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * * *
10928453 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGTGGCAGTAGGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * * * *
10928518 TTGGTAGCATGTAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCCCTCCCCTCTGGCCGGCT
778 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
10928583 GAGTGCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTCCATTCCCAATCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * * * *
10928644 GCATGTGGAGTTTATTCTCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGTAGCACATGCAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * * *
10928709 CTCGAGCATTTGCCAGTGCCATATTTTTCTTTGCCGGGGCACCATTGCCGGAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
10928774 ACCTGATCGACGGCATTGGGGTTTCCGATGATCGGAGGGGCCGAGGGG-GTGTGCACACATGATG
131 ACCTGACCGGCGGCATTGGGG-TTCCGACGATCGG-GGGGCCG-GGGGTGTGTGCGCACATGATG
* * *
10928838 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAGCCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
10928903 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCACTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
10928968 ATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
10929033 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCATCCGAAC
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * *
10929098 AAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAGATCGTCAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
10929163 TTGCCATGAATCTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCAT-AAAA-GG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
10929226 CATTGGCATGCAAAAATATGAAGAATGTACCTAAACACCCACCGACCACTAATGCCTATC-ATCC
583 CATTGGCATGTAGAAATATGAAG-ATGTGCCT-AA-ACCCACCTACCAC-----CCTATCGATCC
** * * *
10929290 ACGGCTTGCGCATCCCGTCTCTCTGGCCCGGTATAGTGCCCGCCCTCCC-ACCGCCCGTTCGTTT
640 ACGGCTTGCGCATCCCGTCTCTCTGG-CCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTT
*
10929354 CGTCGGTTAGCTTAGGCATACGGAGTTC
704 CGTCGGTTGGCTTAGGCATACGGAGTTC
10929382 CCATAGTTTG
Statistics
Matches: 12183, Mismatches: 1615, Indels: 725
0.84 0.11 0.05
Matches are distributed among these distances:
843 1 0.00
844 1 0.00
846 1 0.00
847 2 0.00
848 1 0.00
850 2 0.00
851 1 0.00
853 1 0.00
854 1 0.00
856 2 0.00
857 1 0.00
860 1 0.00
861 193 0.02
862 18 0.00
863 49 0.00
864 102 0.01
865 8 0.00
866 84 0.01
867 142 0.01
868 299 0.02
869 3 0.00
870 267 0.02
871 121 0.01
872 357 0.03
873 311 0.03
874 244 0.02
875 122 0.01
876 418 0.03
877 9 0.00
878 402 0.03
879 435 0.04
880 30 0.00
881 5 0.00
882 5 0.00
883 7 0.00
884 3 0.00
885 29 0.00
886 44 0.00
887 105 0.01
888 2 0.00
889 4 0.00
890 57 0.00
891 27 0.00
892 3 0.00
893 6 0.00
894 5 0.00
895 435 0.04
896 414 0.03
897 343 0.03
898 644 0.05
899 505 0.04
900 611 0.05
901 676 0.06
902 642 0.05
903 925 0.08
904 432 0.04
905 564 0.05
906 269 0.02
907 204 0.02
908 394 0.03
909 169 0.01
910 186 0.02
911 25 0.00
912 2 0.00
914 2 0.00
915 1 0.00
916 1 0.00
917 1 0.00
919 2 0.00
920 27 0.00
921 1 0.00
922 6 0.00
923 2 0.00
924 1 0.00
925 4 0.00
926 1 0.00
927 2 0.00
928 1 0.00
929 1 0.00
930 2 0.00
931 1 0.00
932 4 0.00
933 3 0.00
934 5 0.00
935 10 0.00
936 8 0.00
937 25 0.00
938 7 0.00
939 1 0.00
941 51 0.00
942 2 0.00
943 1 0.00
944 1 0.00
945 3 0.00
946 2 0.00
948 3 0.00
952 7 0.00
953 153 0.01
954 433 0.04
955 37 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:10917927 original size:25 final size:27
Alignment explanation
Indices: 10917888--10917938 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
10917878 TTGACTTACG
*
10917888 CATACGGAGTTCA-TTCCCAGTCTAAA
1 CATACGGAATTCATTTCCCAGTCTAAA
10917914 CATAC-GAATTCATTTCCCAGTCTAA
1 CATACGGAATTCATTTCCCAGTCTAA
10917939 GATCTGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (27 bp):
CATACGGAATTCATTTCCCAGTCTAAA
Found at i:10918826 original size:26 final size:26
Alignment explanation
Indices: 10918790--10918839 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
10918780 GACTTAGGCG
10918790 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
10918816 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
10918840 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:10921509 original size:26 final size:26
Alignment explanation
Indices: 10921469--10921521 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10921459 AGTTGACTTG
10921469 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
* *
10921495 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
10921521 G
1 G
10921522 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:10925094 original size:171 final size:171
Alignment explanation
Indices: 10924802--10925114 Score: 457
Period size: 171 Copynumber: 1.8 Consensus size: 171
10924792 CCTCCCGCCT
* * ** *
10924802 GCCCGTCCGCTTGTTTCGTCGGTTGGCTTTGGCATACGTAGTTCATTCCTAGTCTAAGATCGGAT
1 GCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCAAGTCTAAGATCGGAT
* * ** * * * * * * *
10924867 TGGACTGAGGGTTGTGTCAGTAGGATCGGTAGCATGCAGAGGGGGACCCTGCCGATCCTCGACTT
66 CGGACCGAGGGTTACGGCAGAAAGATCGGCAACACGCAGAGGGGGACCCTGCCGATCCCCGACTT
10924932 GTGCATCCCACCCCTCTGGCCTGCTTATTGCCCGCCCACTC
131 GTGCATCCCACCCCTCTGGCCTGCTTATTGCCCGCCCACTC
*
10924973 GCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCAAGTCTAAGATTGGAT
1 GCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCAAGTCTAAGATCGGAT
10925038 CGGACCGAGGGTTACGGCAGAAAGATCGGCAACACGCAGAGGGGGA-CCTGGCCGATCCCCGACT
66 CGGACCGAGGGTTACGGCAGAAAGATCGGCAACACGCAGAGGGGGACCCT-GCCGATCCCCGACT
10925102 TGTGCATCCCACC
130 TGTGCATCCCACC
10925115 GCTCGAGCAT
Statistics
Matches: 124, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
170 3 0.02
171 121 0.98
ACGTcount: A:0.18, C:0.29, G:0.28, T:0.25
Consensus pattern (171 bp):
GCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCAAGTCTAAGATCGGAT
CGGACCGAGGGTTACGGCAGAAAGATCGGCAACACGCAGAGGGGGACCCTGCCGATCCCCGACTT
GTGCATCCCACCCCTCTGGCCTGCTTATTGCCCGCCCACTC
Found at i:10925158 original size:29 final size:29
Alignment explanation
Indices: 10925116--10925173 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
10925106 CATCCCACCG
*
10925116 CTCGAGCATGTGCTGGTGTCACATTTTTC
1 CTCGAGCATGTGCTGGTGCCACATTTTTC
*
10925145 CTCGAGCATGTGCTGGTGCCGCATTTTTC
1 CTCGAGCATGTGCTGGTGCCACATTTTTC
10925174 TTCGCCAGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.12, C:0.26, G:0.26, T:0.36
Consensus pattern (29 bp):
CTCGAGCATGTGCTGGTGCCACATTTTTC
Found at i:10926873 original size:26 final size:26
Alignment explanation
Indices: 10926844--10926896 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10926834 GTTGACTTAG
10926844 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10926870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10926896 G
1 G
10926897 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10930964 original size:136 final size:136
Alignment explanation
Indices: 10930720--10930993 Score: 521
Period size: 136 Copynumber: 2.0 Consensus size: 136
10930710 AAAAGTCACC
*
10930720 ACTTCCCTAAATAAAACCCTAGTTTAGTTGAACCTATAATGGCTATGGGACTTGTGTTTTCATAA
1 ACTTCCCCAAATAAAACCCTAGTTTAGTTGAACCTATAATGGCTATGGGACTTGTGTTTTCATAA
10930785 TTCACAATTGCAATAGAATCTTTTCAAGTGTCTTAAGGTGTGCAGCTAGAGCTTGAAAGAGTTCT
66 TTCACAATTGCAATAGAATCTTTTCAAGTGTCTTAAGGTGTGCAGCTAGAGCTTGAAAGAGTTCT
10930850 ACTTAT
131 ACTTAT
10930856 ACTTCCCCAAATAAAACCCTAGTTTAGTTGAACCTATAATGGCTATGGGACTTGTGTTTTCATAA
1 ACTTCCCCAAATAAAACCCTAGTTTAGTTGAACCTATAATGGCTATGGGACTTGTGTTTTCATAA
* *
10930921 TTCACAATTGCAATAGACTCTTTTCAAGTGTCTTAAGGTGTGCAGGTAGAGCTTGAAAGAGTTCT
66 TTCACAATTGCAATAGAATCTTTTCAAGTGTCTTAAGGTGTGCAGCTAGAGCTTGAAAGAGTTCT
10930986 ACTTAT
131 ACTTAT
10930992 AC
1 AC
10930994 CTTCTCTTCA
Statistics
Matches: 135, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 135 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (136 bp):
ACTTCCCCAAATAAAACCCTAGTTTAGTTGAACCTATAATGGCTATGGGACTTGTGTTTTCATAA
TTCACAATTGCAATAGAATCTTTTCAAGTGTCTTAAGGTGTGCAGCTAGAGCTTGAAAGAGTTCT
ACTTAT
Found at i:10935724 original size:37 final size:37
Alignment explanation
Indices: 10935678--10935751 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
10935668 AATAAACCAC
*
10935678 AAACTATTAATTTATATTTATTTTAATAAGTTTATAT
1 AAACTATTAATTTATATCTATTTTAATAAGTTTATAT
10935715 AAACTATTAATTTATATCTATTTTAATAAGTTTATAT
1 AAACTATTAATTTATATCTATTTTAATAAGTTTATAT
10935752 TGATATATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.41, C:0.04, G:0.03, T:0.53
Consensus pattern (37 bp):
AAACTATTAATTTATATCTATTTTAATAAGTTTATAT
Found at i:10951154 original size:423 final size:420
Alignment explanation
Indices: 10950370--10951168 Score: 1183
Period size: 423 Copynumber: 1.9 Consensus size: 420
10950360 AGAGAAGGAC
*
10950370 AAATCAAGCAAAAAAAAGTCTTTATCCTTATATTCCATGAATGAAATCTCTCATAGAAGATAATG
1 AAATCAAGCAAAAAAAAGTCTTTATCCTTATATTCCATGAATGAAATCTCTCATAGAAGATAAGG
* **
10950435 TTGAGTAAAATATGGTTTACTTTCTTCAAAAGTGACATTTATAAACACATAAATTTTTTGCTAGA
66 TTGAGTAAAAGATGGTTTACTTTCTTCAAAAGTGACACCTATAAACACATAAATTTTTTGCTAGA
*
10950500 AGGATAATAGCACTTATACCCTTTTTGAGTTGATGAATATCTCATAAAATGCACTTAATTGCTCT
131 AGGATAATAGCACTTATACCCTTTTTGAGTTGATGAATATCACATAAAATGCACTTAATTGCTCT
* * *
10950565 AGGATCCAATTCCCCCTATTGTGATTGTGAACATGAACAAATGATGTACTACCAAATATCTTAGG
196 AGGATCCAATTCCCCCTATTATGACTGTGAACATGAACAAATGATGTACAACCAAATATCTTAGG
* * * * *
10950630 TATGAGGTTGTTTGTGGTATTAAAGTTGGGATAGAATTGTGAGAGTAGTTTTATATGAGTTTTAA
261 TATGAGGTTGTTTGTGATATTAAAGTTGAGATAGAATTGTAAAAGTAGTTTCATATGAGTTTTAA
* *
10950695 ATCCCAAAACCTTTGAAGGTAACCTATTTGTAATATGTGTGGTAGTAAGAATAGCTTCCTCTTAG
326 ATCCCAAAACCTTTGAAGGTAACATATTTATAATATGTGTGGTAGTAAGAATAGCTTCCTCTTAG
10950760 TAAGATTTGGGTATGCTTTCTTGAAAAAGT
391 TAAGATTTGGGTATGCTTTCTTGAAAAAGT
* * * * * * *
10950790 AAATCAAGCAAAAAGAAGTTTTTATCTTTATCTTCCATGAATGAAGTTTCTC-TGTGAAGATAAG
1 AAATCAAGCAAAAAAAAGTCTTTATCCTTATATTCCATGAATGAAATCTCTCAT-AGAAGATAAG
* * * *
10950854 GTTGAGTAAAAGATGGTTTACTTTGTTCAAAAGTGACACCTATAGACATATAAAATTTTTTGGTA
65 GTTGAGTAAAAGATGGTTTACTTTCTTCAAAAGTGACACCTATAAACACAT-AAATTTTTTGCT-
* * *
10950919 AGAA-GATGATAGCACTTATACCCTTTTCTGAGTTGATGAATATCACATAAAAGTTCATTTAATT
128 AGAAGGATAATAGCACTTATACCCTTTT-TGAGTTGATGAATATCACATAAAA-TGCACTTAATT
* ** * *
10950983 GCTCTAGGATCTAATTTTCCCTATTATGACTGTGAATATGAACAAATGATGTACAACTAAATATC
191 GCTCTAGGATCCAATTCCCCCTATTATGACTGTGAACATGAACAAATGATGTACAACCAAATATC
*
10951048 TTAGGTGTGAGGTTGTTTGTGATATTAAAGTTGAGATAGAATTGTAAAAGTAGTTTCATA-GTAG
256 TTAGGTATGAGGTTGTTTGTGATATTAAAGTTGAGATAGAATTGTAAAAGTAGTTTCATATG-AG
*
10951112 TTTTAAATCCCAAAATCC-TTGAAGGTAACATATTTATAATATGTGTGGTAGTGAGAA
320 TTTTAAATCCCAAAA-CCTTTGAAGGTAACATATTTATAATATGTGTGGTAGTAAGAA
10951169 CAATTTCCCC
Statistics
Matches: 336, Mismatches: 36, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
419 1 0.00
420 99 0.29
421 33 0.10
422 28 0.08
423 173 0.51
424 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.36
Consensus pattern (420 bp):
AAATCAAGCAAAAAAAAGTCTTTATCCTTATATTCCATGAATGAAATCTCTCATAGAAGATAAGG
TTGAGTAAAAGATGGTTTACTTTCTTCAAAAGTGACACCTATAAACACATAAATTTTTTGCTAGA
AGGATAATAGCACTTATACCCTTTTTGAGTTGATGAATATCACATAAAATGCACTTAATTGCTCT
AGGATCCAATTCCCCCTATTATGACTGTGAACATGAACAAATGATGTACAACCAAATATCTTAGG
TATGAGGTTGTTTGTGATATTAAAGTTGAGATAGAATTGTAAAAGTAGTTTCATATGAGTTTTAA
ATCCCAAAACCTTTGAAGGTAACATATTTATAATATGTGTGGTAGTAAGAATAGCTTCCTCTTAG
TAAGATTTGGGTATGCTTTCTTGAAAAAGT
Found at i:10952813 original size:22 final size:22
Alignment explanation
Indices: 10952785--10952827 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
10952775 TTTTTTGTCT
*
10952785 TTAATTCTAGGGATACAAATAC
1 TTAATTCTAGAGATACAAATAC
10952807 TTAATTCTAGAGATACAAATA
1 TTAATTCTAGAGATACAAATA
10952828 TAAAGATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (22 bp):
TTAATTCTAGAGATACAAATAC
Found at i:10953576 original size:16 final size:16
Alignment explanation
Indices: 10953555--10953602 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
10953545 TTAGATAAAT
10953555 AAAATTAAATTATATA
1 AAAATTAAATTATATA
*
10953571 AAAATTAAA--ATATC
1 AAAATTAAATTATATA
* *
10953585 AAAGTTAAATTATTTA
1 AAAATTAAATTATATA
10953601 AA
1 AA
10953603 GCTATTTGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 12 0.46
16 14 0.54
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (16 bp):
AAAATTAAATTATATA
Found at i:10953747 original size:22 final size:21
Alignment explanation
Indices: 10953705--10953755 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 21
10953695 ATTAATTTAA
* *
10953705 TATTAATTTTTAATATTTTAT
1 TATTAATTATTAATATATTAT
10953726 GTATTAATTATTAAT-TAATTAT
1 -TATTAATTATTAATAT-ATTAT
*
10953748 TAATAATT
1 TATTAATT
10953756 CAAATTAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TATTAATTATTAATATATTAT
Found at i:10958552 original size:4 final size:4
Alignment explanation
Indices: 10958537--10958573 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
10958527 AAAAATTGAA
10958537 TTAT TT-T TTAT TTAT TTAT TTAT TTA- TTATT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA-T TTAT TT
10958574 TTAATCGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 6 0.20
4 21 0.70
5 3 0.10
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTAT
Found at i:10959241 original size:30 final size:30
Alignment explanation
Indices: 10959205--10959276 Score: 144
Period size: 30 Copynumber: 2.4 Consensus size: 30
10959195 AGTCAAAGTG
10959205 ATGATGATGGTGGTTTAAGTCCAAATGATA
1 ATGATGATGGTGGTTTAAGTCCAAATGATA
10959235 ATGATGATGGTGGTTTAAGTCCAAATGATA
1 ATGATGATGGTGGTTTAAGTCCAAATGATA
10959265 ATGATGATGGTG
1 ATGATGATGGTG
10959277 ATGGTGATGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.33
Consensus pattern (30 bp):
ATGATGATGGTGGTTTAAGTCCAAATGATA
Found at i:10959278 original size:6 final size:6
Alignment explanation
Indices: 10959269--10959330 Score: 115
Period size: 6 Copynumber: 10.3 Consensus size: 6
10959259 ATGATAATGA
*
10959269 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG AGATGG
1 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG
10959317 TGATGG TGATGG TG
1 TGATGG TGATGG TG
10959331 CAAATTTTGG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.18, C:0.00, G:0.50, T:0.32
Consensus pattern (6 bp):
TGATGG
Found at i:10959733 original size:33 final size:33
Alignment explanation
Indices: 10959694--10959757 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
10959684 GTATTTACAT
* *
10959694 CTCAAATGTATCCCCCACCACAAATGTATCATC
1 CTCAAATATATCACCCACCACAAATGTATCATC
* **
10959727 CTCAAATATATCATCCACCTTAAATGTATCA
1 CTCAAATATATCACCCACCACAAATGTATCA
10959758 AGAACAAAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.36, C:0.31, G:0.05, T:0.28
Consensus pattern (33 bp):
CTCAAATATATCACCCACCACAAATGTATCATC
Found at i:10965046 original size:26 final size:26
Alignment explanation
Indices: 10965016--10965068 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10965006 GTTGACTTAG
*
10965016 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
10965042 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
10965068 G
1 G
10965069 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:10965933 original size:26 final size:26
Alignment explanation
Indices: 10965904--10965965 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
10965894 GTTGACTTAG
*
10965904 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
10965930 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
10965956 GCATATGGAG
1 GCATATGGAG
10965966 GCAACACATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:10966821 original size:26 final size:26
Alignment explanation
Indices: 10966791--10966843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10966781 GTTGACTTAG
10966791 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
* *
10966817 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
10966843 G
1 G
10966844 ATGGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:10968258 original size:903 final size:902
Alignment explanation
Indices: 10964258--10970640 Score: 8425
Period size: 899 Copynumber: 7.1 Consensus size: 902
10964248 TGCGAGGGAC
* * *
10964258 CATCACCGGAGAACCTAACCGACGGCATTGGGGTTCTGGCGATC-GGGGGGCC-GGGGGGTGTGC
1 CATCA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
10964321 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
10964386 TTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
10964451 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
10964516 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
260 TGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
10964581 CCATCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAA
325 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * * *
10964646 ACGAGTCTTGTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
10964711 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGAT
455 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * **
10964776 CCACGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTTGCTCGTT
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTT
* * *
10964841 TCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGTGTTGC
584 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
* ** * * * * ** * *
10964906 GGCAGCAAGATCAGCAGCATGTATAGAGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGTCCCT
649 GGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
10964971 CTAGCTGGCTGAGCACCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
714 CTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
10965036 GTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCACAT
779 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* *
10965101 GCTAGGCTCGGGAATGTGTTGGTGCCGCATTTTT-TT--T-T--G--CCA------GAG
844 GCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGTCGGAG
* * * * * **
10965146 CATCGCCAGAGAACCTGACCGAAGGCATCGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTTT
1 CATC-ACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* *
10965211 GCACAAGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
10965276 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
10965341 AGTGTCTAAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTATACACTTCGAGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
10965406 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACT
260 TGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* ** * * * *
10965471 CCTGCAAAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA-AAA
325 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * *
10965535 ACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA-CGTTGTATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
10965599 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGAT
455 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
10965664 CCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCAG-CAGCCTGCCCTCCTGCACGT
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCCGCC-GCCCGCCCGCTCGT
* * * * * * *
10965728 TTAGTCGGTTGGCTGAGGCGTAGGGAGTTCATTCCCAGTCTAATATCAGACTGGACTGAGGGTTA
583 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
* * * * * * *
10965793 CGACAGTAGGATTGGCAGCACACAGAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCACCCC
648 CGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
*
10965858 TCTGGCCTG-CTGAGCACCCGCACGTTCG-TTCTGTGGGTTGACTTAGGCATACGGAGTTCATTC
713 TCTGGCC-GACTGAGCACCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
10965921 CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGCAT---A--TG---GA-------GGCAAC
776 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAGC
* * * * *
10965971 ACATGCTGGACTCGGGCATGTGTTGGTGCCACCTTTTTCTTCGTCGGGGCACCGTCG-CTGGAG
840 ACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGTC-GGAG
* * * *
10966034 CATCACCGGAGAACCTGACCGGCAGCATTGGGGTACCGACGATCGGGGGGGCCGGGGGGGGTGCG
1 CATCA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTG
* *
10966099 CGCACATGATGTGCGAT-GGTGCTGGCACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
64 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
10966163 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGGCATTA
129 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* ** * *
10966228 AAGTGTCTAAAATGGGGACACTTTTTTTTGAATGGTCACAAAATCTCGTACACTTCGAATTTTTA
194 AAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * *
10966293 GCTAAATTTTTTTATGCATGTCAACAAAAATACAAGGACCACATCTACCAAGTTTGGGGCCAAAA
258 GCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * *
10966358 ATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
323 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
* * *
10966423 AAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAG
388 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
10966488 CCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTG
453 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
10966553 ATCCACGGCTTGTGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCG--C-CCGCCCGCCCACTCGT
518 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGT
* * *
10966615 TTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGACTGAAGGTT
583 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTT
*** * * * * *
10966679 GCGGCAGCAGGATCAACAGCACACAGAGGGAGACCCGACCGATCCCAGGCTTACGCTTCCCGCCC
647 GCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * *
10966744 CTCTGGCCGACTGAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
712 CTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * *
10966809 CAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGGACCGGACCGAGGGTTGTGGCAGCAC
777 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * * *
10966874 ATACTGGGCTTGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAG
842 ATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGTCGGAG
*
10966935 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGC
1 CATCA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* **
10966999 GCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCCGTCCCTCATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
10967064 TCGAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTTCAGGTTTGCTACCAGTAGCCACTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * **
10967129 AGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACAATTTAAGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
10967194 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
260 TGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * *
10967259 TCTTTCAAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAA
325 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
10967324 ACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
10967389 ATAAAAATGCCATTGGCATGCAGAAATATGAATATGTGCCTAAACCCACCTACCACTCTATCGAT
455 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
** * * *
10967454 CCACAACTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTACCCGCCCGCACGACCGCCCGCTCGTT
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CGCCCGCCCGCTCGTT
* * * * *
10967519 TCGTCGGTTCGCTTAGGCATACGGAGCTCATTCCCAGTTTAAGATCAGACCGGACCGAGGGTTGT
584 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
* * * * * **
10967584 GGTAGCAGGATTGGAAGCACGCAGAGGGGGACCCAACCAATCCCCGGTTTGCGCATCTTGCCCCT
649 GGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
10967649 CTGGCCGACTGAGCACCCGTACGCTCGTTTTGTGGGTTGAATTAGGCATACGGAGTTAATTCTCA
714 CTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * *
10967714 GTATAAGCATACGGAGTTCGTTCCCAGTCTAATATCGGACTGGACCGAGGGTTGCGGCAGCACAT
779 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* * * * * *
10967779 GATAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGTCTAGGCACCATCGTCGAAT
844 GCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGTCGGAG
* * * ** * *
10967838 CATCGACGGAGAACCTGATCGATGACATTGGGGTTCCGGTGATCGGTGGGG-CGAGGGGGGTGTT
1 CATC-ACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTG
* * *
10967902 CGCACATGATGTGCGATGGGTGCTGTTACTTGGCCCTTATATT-GCCCTCTTGTCCCTCATCAAA
64 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CCTATCCCTCATCAAA
*
10967966 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCATT
128 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
10968031 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTA
193 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
10968096 GCTAAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGCCTACCATGTTTGGGGCCAAAA
258 GCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
10968161 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCCAAAATCGTG-AAAATAGA
323 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
* * * *
10968225 AAATGAGACATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
388 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
10968290 CCATAAAAATGGTATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
453 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
10968355 ATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGGGTAGTACCCG--C-CCGCACGCCCGCTCGT
518 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGT
** * * * ** * *
10968417 TTTATCGGTTGGCTTAAGCATACGGAGCTGATTCCCAGTCTAAGATTGGACCAGA-TCAAGGGTT
583 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTT
* * * * *
10968481 GCGGCAGTAGGATTAGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCC
647 GCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
10968546 CTCTGGCC-AGCTGAGCACCCGCACGCTCGTTTCATGGGTTCAATTAGGCATACGAAGTTCATTC
712 CTCTGGCCGA-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * *
10968610 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGAGCGAGGGTTACAGCGGCA
776 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* * *
10968675 CATGCTGGGCTCGGGCTTCTGTTGGTGCCTCATTTTTCTTCGTC-GGGCCACCATCGTCGGAG
841 CATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGG-CACCATCGTCGGAG
* * * * * * *
10968737 CATCGTCGGAGAACCTGACC-AGTGGCATTGGGGTTCTGGCGATTGGGGGGGTCGGGGGGGTGTA
1 CATC-ACGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
* * ** * *
10968801 CACACATGATGTGTGATGGGTGCTGGTACTTGGCAATTATATTGGCCCCTTATTCCTCATCAAAC
64 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
10968866 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
129 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
10968931 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAG
194 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
10968996 CTAAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGCCTACCATGTTTGGGGCCAAAAC
259 CTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
10969061 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAA
324 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * *
10969126 AACGAGTCGTCTTGGCATGAAACTTCACATGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * *
10969191 CATAAAAATGGTATTGGCACGTAGAAAT-TGAAGATGTGCCTGAAACCCAACCTGCCACCCTATT
454 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCC-ACCTACCACCCTATC
* * * *
10969255 GATCCATGGCTTGCGGCCATCCCGTCTCTCTGGCTGGGCGTAGTTACCCGTCCCGCCCGCCCCCC
517 GATCCACGGCTTGC-G-CATCCCGTCTCTCTGGC-CGGCGTAG-TGCCCG-CCCG-CCGCCCGCC
** * *
10969320 GTCGCTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATTAGACCAGAC
576 --CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * * ** *
10969385 CGACGGTTGCGGCAGC-----TGGCAGCAAGCAGAAGGGGACCCGATCGATCTTCGACTTGCGCA
639 TGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * * * * *
10969445 TCCCGCCCCTCTGGCTGATTGAGCACCCGCACGATCGTTTTGTGGGTTGAATTAGGCATACAGAG
704 TCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
10969510 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC
769 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* * *
10969575 GGCAGTACATGTTGGGCTTGGGCATGTGTTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGT
834 GGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCT-GGGCACCATCGT
10969639 CGGAG
898 CGGAG
* * **
10969644 CATCACCGAAGAACCTGATCG-CGGCATTGGGGTTCCGACGATC--GGGGG--GTAGGGG-GTGC
1 CATCA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* * *
10969703 GCACATGATGTGCGGTGGGTGCTGGTACTTGGCGCTTATATTGGCCCACTATCCCTCATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
10969768 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
** *
10969833 AGTGTCTGAAATTAGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
10969898 TGGAATTTTTTTATGCATGCCAAAAAAAATACAGGGATCACGTCTGCCAAGTTTGGGGCCAAAAA
260 T-GAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * ** *
10969963 T-CTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAAAA
324 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
10970027 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
10970092 CATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGA
454 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* ** * * *
10970157 TCCACAGCTTATGCATCCCGTCTCTCTAGCCGGCGTAGTGCCTG--C-CCACCCGCCCGCTCGTT
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTT
** * * * * *
10970219 TTATCGGTTGGATTAGCCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGACTGAGGGTTAC
584 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
* * * * * * * * ** * * *
10970284 GGTAGCAGCATCGGTAGCATGTAAAAGGGGACCCGGTCGATCCTCGACTTACGCATCCCGCCCCT
649 GGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * *
10970349 CTGGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATATGGAGTTCATTCCCA
714 CTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
10970414 GTCAAAGCATACGGAGTTCATTCCCAATCTAAGATCGTACCAGACCGAGGGTTACGGCAGCACAT
779 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* *
10970479 GCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTC--GG-AGCA---TC---G
844 GCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGTCGGAG
* * *
10970529 C-T---GGAGAACCTGACCGACGGCATT-GGGTTTCGACGATCGGCGGGGTCGGGGGGGTGTGCG
1 CATCACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
*
10970589 CACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATC
66 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
10970641 ACTCGTCCGC
Statistics
Matches: 4838, Mismatches: 561, Indels: 195
0.86 0.10 0.03
Matches are distributed among these distances:
874 37 0.01
875 2 0.00
877 1 0.00
880 26 0.01
881 9 0.00
882 6 0.00
884 7 0.00
885 55 0.01
886 5 0.00
887 208 0.04
888 544 0.11
889 295 0.06
890 354 0.07
891 131 0.03
892 2 0.00
893 1 0.00
894 197 0.04
895 1 0.00
896 4 0.00
897 7 0.00
898 20 0.00
899 984 0.20
900 250 0.05
901 470 0.10
902 78 0.02
903 517 0.11
904 303 0.06
905 6 0.00
906 19 0.00
907 221 0.05
908 5 0.00
910 7 0.00
912 66 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
CATCACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTC
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGG
CAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
GGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGTCGGAG
Found at i:10968623 original size:26 final size:26
Alignment explanation
Indices: 10968593--10968645 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10968583 GTTCAATTAG
10968593 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
10968619 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10968645 G
1 G
10968646 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10969536 original size:26 final size:26
Alignment explanation
Indices: 10969500--10969552 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10969490 GTTGAATTAG
10969500 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
10969526 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10969552 G
1 G
10969553 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10972615 original size:26 final size:26
Alignment explanation
Indices: 10972579--10972657 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
10972569 GTTGACTTAG
10972579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10972605 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10972631 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10972657 G
1 G
10972658 ATCAGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10973530 original size:26 final size:26
Alignment explanation
Indices: 10973499--10973548 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
10973489 GACTTAGGCA
10973499 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
*
10973525 TACGGAGTTCTTTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
10973549 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:10974424 original size:26 final size:26
Alignment explanation
Indices: 10974395--10974450 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
10974385 TAGGTTGACT
* *
10974395 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTAATTCCCAATC
*
10974421 TAAGCATACGGAGTTAATTCTCAATC
1 TAAGCATACGGAGTTAATTCCCAATC
10974447 TAAG
1 TAAG
10974451 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTAATTCCCAATC
Found at i:10975034 original size:888 final size:889
Alignment explanation
Indices: 10970834--10976824 Score: 6473
Period size: 896 Copynumber: 6.7 Consensus size: 889
10970824 GTTGACTTAG
* * * * * * *
10970834 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTAATTCTCAATCTAAGATCAGACCGGAC-GAGGGTTGCGACAGCACATGCTGGG
* *
10970899 CTCGGACATGTGTTGGTGCCGCATTTTTCTTC-ACTGGGGCACCATCGA-CGGAGCATCGCCAGA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATC-ACCGGAGCATCGCC---
* * *
10970962 GAACCTGACCGGCGGCATT-GGGGTTCCGACGATCAGGGGGCCCGGGGGGGTGTGCGCACATGAT
125 GAA---GA-------CATTAGGGTTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGAT
10971026 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
179 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
10971091 CACACCCCCATAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGA
244 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
10971156 AATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTT
309 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
* * * *
10971221 TTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACGCCTTTCGAA
374 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * *
10971286 AAAATTTTAAAAAATCCCGAACAAC-AAAAAGTTTTAAAAATCGTGAAAAATATAAAATGAGTCG
439 AAAATTTTAAAAAATCCCGAAC--CGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
10971350 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
502 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
10971415 GACATTGGCGCACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
567 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
10971480 TGCGCATCCCGTCTCCCTGGCCGGTATAGT--------G-CC-T--GCCCGCTCGTTTCGTCGGT
632 TGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGT
* * * * *
10971533 TGGCTTAGGCATACGGAGCTCATTCCAAGTCTAAGATCAGACCAGACTGAGGGTTGCT-ATAGCA
697 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-ATGGTAGCA
* * * * * * * * *
10971597 GGATCAGCAGCAAGCAGAGGGGGACCCAACCAATCCCCGGCTTGCGCATCTCGCTCTTCTGGCCG
761 GGATCGGTAGCATGCAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
* * * *
10971662 GCTGAGCACCCGCACGCTCGTTTCGTGGGGTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
826 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
10971726 GCATGCGGAGTTCATTCTCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTAATTCTCAATCTAAGATCAGACCGGA-CGAGGGTTGCGACAGCACATGCTGGG
* * ** * * **
10971791 CTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGAACCTGACCGGC
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATC-G-CCGAA
* * * ** *
10971856 GGCATT-GGGGTTCCAACGAT--AAGGGGCCGGGGGGGTGTGCGCACATGATGTGAGATGGGTGC
128 GACATTAGGGTTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
10971918 TGATACTTAGCCCTTATATTGGCCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
192 TGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
10971983 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
256 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * * *
10972048 TTTTTCAAATGGTCACAAAATCTTATACACTTTGAATTTTTAGTTGAATTTTTTTGTGCATCCCA
321 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCA
* * * * * *
10972113 ACAAAAATAGAAAGATCACG-CTTACCAAGTTTGGGGCCAAAAATGCTTTCAAAAAAATTTTAAA
386 AAAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
** * * * *
10972177 AAATCTTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAAGAGTCGTCTTGCCACGAA
450 AAATCCCGAACCG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * * *
10972242 AATTGATGCGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCACA
514 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* ** *
10972307 CAGAAATATGAAGAT-T-CTACTAAAACCACCTACCACTTTATCGATCCACGGCTTGCGCATGCC
579 CAGAAATATGAAGATGTGC--CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * ** ** * * *
10972370 GTCTCTCTGGCCAGCGTAGTGCCTTCCCGTTCGTCCGCCCACTTGTTTCATCGGTTGGCTTAGGC
642 GTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
10972435 ATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGATC-A-----AAGGTTGC-GG--C---AGC
707 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGATCGGTAGC
* ** * * * * *
10972488 ATGCAGAGGGGGTCCCGGTCGATCCTCGGCTTGTGCATCCCACCCCT-TGGCCAGCTGAGCACCT
772 ATGCAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
10972552 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
10972605 GCATACGGAGTTCATTTCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAT
1 GCATACGGAGTT-A-----A---T-----T-C-----TCA-----A-TCTAAGATCAGACCGGA-
* * * * * * * *
10972670 GGAGGGTTACGACAACACATACTAGGCTCGGGCATGTGTTGATGCCGTATTTTTCTTCATC--GG
39 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
* ** * * * * * **
10972733 -AGCATCGTCGGAGAACTTGACCGACGGCATTAGGG-TTCTGGTGATC------GCCGGGGGGTG
104 CACCATCACCGGAGCA-TCG-CCGAAGACATTAGGGTTTCCGACGATCGGGGGGGCCGGGGGGTG
* * *
10972790 TGCGCACATGATGTGCAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAA
167 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
10972855 ACCTCGAGAACTCACACCCCCTGAAAAAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
232 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
10972920 TATAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTG
297 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * *
10972985 AGGT-AAATGTTTTTGTGCATGGCAAAAAAAAAACAAGGATCACGTCTACCATGTTTGCGGCCAA
362 AGCTGAAAT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * ** *
10973049 AACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATA
426 AACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACC-GAAAAAGTTTCAAAAATCATGAAAAATA
* * *
10973114 AAAAACGAGTCGTCTTGCCATGAAACTTTACGTGGAGGCTTAAGGGACCATTGTATGAATTTACA
490 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
10973179 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
555 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
10973244 CGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATTGTGCCCGCCCACCCGTCCGCCCGCC
620 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGT----CCG--
* * *** * * *
10973309 CGTCCGCTCGTTTCGTCAGTTGGCTGATATATATGGAGTTCAGTCCCAGTCTAAGATCAGACCGG
679 C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * ** * * * * *
10973374 ACCAAGGGTTACGACAGCAGGATCGGTAGCACGTA-ATGGGGGACCCGATCGATCCTCGACTTGC
742 ACCGAGGGTTATGGTAGCAGGATCGGTAGCATGCAGA-GGGGGACCCAATCGATCCCCGGCTTGC
* ** **
10973438 GCATCCCACCCCTCTGGCCGGTTGAGCAG-CCATACGCTTATTTCGTGGGTTGACTTAGGCATAC
806 GCATCCCACCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
10973502 GGAGTTCATTCCCAGTCTAA
870 GGAGTTCATTCCCAGTCTAA
* ** * * * * *
10973522 GCGTACGGAGTTCTTTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACAACAGCACATGCTGGG
1 GCATACGGAGTTAATTCTCAATCTAAGATCAGACCGGA-CGAGGGTTGCGACAGCACATGCTGGG
* *
10973587 CTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCC---G-
* *
10973652 ACCTGACCGATGGCATTGGGGTTT-CGACGAT-TGGGGGGCCGGGGGGGTGTGCGCACATGATGT
126 A----A--GA---CATTAGGGTTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
10973715 ACGATTGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
181 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
10973780 CTCCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTACCGGTAGCCATTAAAGTGTCTAAAA
246 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
10973845 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTTGCTG-AATTTTTT
311 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
* * ** * * * *
10973909 GTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGTAAAAACGCCATCCAAAAA
376 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * *
10973974 AATTTTAAAAAATCTCAAACCGTAAAAAGTTTCACAAATCATGAAAAATAGAAAACGAGTCGTCC
441 AATTTTAAAAAATCCCGAACCG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
10974039 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
505 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
10974104 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGC
570 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
10974169 ACATCTCGTCTCTCTGGCTGGCATAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGG
635 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
10974234 CTTAGGCATACGGAGTTCATTCCTAGTCGAAGATCAGACCGGACTGAGGGTTATGGTAGCAGGAT
700 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGAT
** * * ** *
10974299 CGGTAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTACACATCCTGCCCCTCTGGTCGGCTG
765 CGGTAGCATGCAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
* * * * *
10974364 AGCGCACGCATGCTCGTTTCCTAGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
830 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
10974424 GCATACGGAGTTAATTCTCAATCTAAGATCAGACCGGATCGAGGGTTGCGGCAGTACATGCTAGG
1 GCATACGGAGTTAATTCTCAATCTAAGATCAGACCGGA-CGAGGGTTGCGACAGCACATGCTGGG
* *
10974489 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
* * *
10974554 CATT-GGGTTTCCGGCGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGTGATGGGTGCTGG
130 CATTAGGGTTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * * *
10974618 TACTTGGGCCTTATATTTGCTCCCTA-CCCTCATCAAACCTCGGGAAGTCACACCCCCTTAAAGA
195 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
10974682 GCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
260 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
10974747 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTTTGTGCACGCCAAGAA
325 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAA
* * *
10974812 AAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTTCGAAACAATTTTAAAAAATC
390 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
* * * * *
10974877 CCGAACCGTAAAATTTTTAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCA
455 CCGAACCGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
** *
10974942 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCACACAGAAA
520 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * * *
10975007 TATGAAGATGTGCCTAAACCAACCTACCACCCTATCAATCCACGACTTGCGCATCCCGTGTCTCT
585 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * * * *
10975072 GGCCGACGTAGTGCCCACCCGCCTGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACAGAT
650 GGCCGGCATAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * *
10975137 TTCATTCCCATTCTAAGATCAGACCCGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGAG
715 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGATCGGTAGCATGCAGAG
* * * * *
10975202 GGGGACCCAACCGATCGCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTC
780 GGGGACCCAATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
10975267 ATTTTGTGGGTTGACTTAGGGATACGAAGTTCATTCCCCA-TCTAA
845 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCCAGTCTAA
*
10975312 G-AT-C--AG----------A-C--AG----GACC--A--AGGGTTGCGACAGCACAAGCTGGGC
1 GCATACGGAGTTAATTCTCAATCTAAGATCAGACCGGACGAGGGTTGCGACAGCACATGCTGGGC
* * * * * *
10975352 TTGTGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGACAC
66 TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGAC
* * *
10975417 ATTGGGGTTT-CGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGT
131 ATTAGGGTTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
** *
10975481 ACTTGATCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAG
196 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
10975546 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGTGGACACTTTTTT
261 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
10975611 CAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTG-AATTTTTTCGTGCATGCCAAAAA
326 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT-GTGCATGCCAAAAA
* * *
10975675 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAATAATC
390 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
* * **
10975740 CAGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACTTCACGTGTAGGCTTAAGGGACC
455 CCGAACCG-AAAAAGTTTCAAAAATCATG------A-AAAA--T-A---G-A-----AA---A-C
10975805 ATTGTATGAAAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
496 ---G-A-G----TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * * *
10975870 ACAAGCCAGAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCAACCACCC
552 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* ** * * * * *** *
10975935 TATCAATAAACGGCTTGCACATCTCGTCTCTCTGGCCGGCATAGTGCCCGTCCACCTACCCGTCC
617 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCCC
* * ** * * ***
10976000 GCTCCTTTCATCGGTTGTTTTAGGCATACAGAGTTCATTACCAGTCTAAGATCAGAGTTGACCGA
682 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
** * * * * *
10976065 GGGTTGCGGTAGCAGGATCGGTAGCATGCAGAGGGGGACTCAGTCGATCCTCGACTTGCGTATCC
747 GGGTTATGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCC
* * * * *
10976130 CATCCTTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTC
812 CACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
10976195 ATTCCCAGTCTAA
877 ATTCCCAGTCTAA
*
10976208 GCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTT-A-----A-T-T---C---------TCA-----A-TCTAAGATCAGACCGGAC
* * * *
10976273 TGAGGGTTGCAACAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
40 -GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
* ** ** * * * * **
10976338 CACGATCGTCAAAGAACCTGACCGACGGCATTAGGG-TTCCGGTGATCGGGGGGGCCGAGGGGGT
104 CACCATCACCGGAGCATC-G-CCGAAGACATTAGGGTTTCCGACGATCGGGGGGGCCG-GGGGGT
*
10976402 GTGCGCACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
166 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * **
10976467 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCTG
231 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
10976532 TTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
296 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
10976597 TAGCTGAAATGTTTTGCGCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAA
361 TAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
10976662 AAATCC-TTCTGAAAAAATTTTAAAAAAATCCCAAACC-ACAAAAGGTTTCGAAAATCATGAAAA
426 AACTCCTTTC-GAAAAAATTTT-AAAAAATCCCGAACCGA-AAAA-GTTTCAAAAATCATGAAAA
* * *
10976725 ATAGAAAACGAGTCGTCTTGCCATGAAATTTCATGTAAAGGCTTAAGGGACCATTGTATGAATTT
487 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
10976790 GCAAGCCATAAAAATGGCATTGGCACGCAGAAATA
552 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
10976825 AGATCAGACA
Statistics
Matches: 4324, Mismatches: 564, Indels: 394
0.82 0.11 0.07
Matches are distributed among these distances:
862 161 0.04
863 219 0.05
864 16 0.00
865 1 0.00
867 4 0.00
870 1 0.00
871 6 0.00
873 2 0.00
874 2 0.00
877 1 0.00
878 2 0.00
879 141 0.03
880 433 0.10
881 17 0.00
883 3 0.00
884 2 0.00
885 3 0.00
886 5 0.00
887 3 0.00
888 511 0.12
889 150 0.03
890 10 0.00
891 72 0.02
892 169 0.04
893 8 0.00
894 15 0.00
895 8 0.00
896 729 0.17
897 61 0.01
898 6 0.00
899 4 0.00
900 5 0.00
901 1 0.00
902 317 0.07
903 7 0.00
904 53 0.01
905 78 0.02
906 5 0.00
908 1 0.00
909 1 0.00
910 285 0.07
911 193 0.04
913 1 0.00
915 1 0.00
916 42 0.01
917 72 0.02
920 81 0.02
924 1 0.00
925 1 0.00
926 1 0.00
929 1 0.00
930 1 0.00
933 2 0.00
935 1 0.00
937 1 0.00
938 1 0.00
939 3 0.00
942 1 0.00
943 5 0.00
945 5 0.00
946 1 0.00
948 68 0.02
949 3 0.00
950 27 0.01
951 261 0.06
952 32 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GCATACGGAGTTAATTCTCAATCTAAGATCAGACCGGACGAGGGTTGCGACAGCACATGCTGGGC
TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGAC
ATTAGGGTTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCC
CGAACCGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCATAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGATCGGTAGCATGCAGAGG
GGGACCCAATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:10976209 original size:26 final size:26
Alignment explanation
Indices: 10976179--10976260 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
10976169 TGGGTTGACT
10976179 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
10976205 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
**
10976231 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
10976257 TAAG
1 TAAG
10976261 ATCGGACCGG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:10977703 original size:26 final size:26
Alignment explanation
Indices: 10977673--10977728 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
10977663 TGGGTTGACT
10977673 TAAGCATACGGAGTTCATTACCAGTC
1 TAAGCATACGGAGTTCATTACCAGTC
*
10977699 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTACCAGTC
10977725 TAAG
1 TAAG
10977729 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTACCAGTC
Done.