Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 66 of 190
Found at i:10978599 original size:896 final size:896
Alignment explanation
Indices: 10976823--10984645 Score: 10395
Period size: 892 Copynumber: 8.7 Consensus size: 896
10976813 CACGCAGAAA
* * *
10976823 TAAGATCAGA-CAGGACCAAGGGTTGC-GACAGCACAAGCTGGGGCTCGTGCATGTGCTGGTGCC
1 TAAGATCAGACCA-GACCGAGGGTTGCAG-CAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCC
* * * * *
10976886 GCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCG-TCGGAGAACATGACCGACGGCATTAG
63 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGG
* ** *
10976950 GGTTCCGACGATCGAGGGGGTCAAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTG
127 GGTT-CGACGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * * *
10977015 GTCATTATATTGGCCCCCTATCCCTCATAAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTT
190 GCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
10977080 GAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
254 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
10977145 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
319 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
**
10977210 AAGGATCACGTCTACCAAGTTTGGGGCCAAAAAACCTTCCAAAAAAATTTTAAAAAATCCCGAAC
384 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* ** *
10977275 CGCAAAAATTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGGTG
449 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC-GTG
**
10977340 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
513 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
*
10977405 AAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCATCCCGTCTCTCTGGCC
578 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
10977470 -ACCGTAGTGCCCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
643 GA-CGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTC
* * *
10977534 CCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATCAACAGCATGTAGAGGGGGACC
707 CCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGA-C
* * * * ** * *
10977599 CCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCTTCCGCACGCTCTTTTCA
770 CCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
10977663 TGGGTTGACTTAAGCATACGGAGTTCATTACCAGTCTAAGCATACGGAGTTCATTCCCAGTC
835 TGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
*
10977725 TAAGATCAGACCAGACCGAGGGTTGCAAG-AGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGC
1 TAAGATCAGACCAGACCGAGGGTTGC-AGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * **
10977789 ATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGTGGCATTTGGAT
65 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCA-TTGGGG
* * * *
10977854 TTCGACGGTCGAGGGGGCCCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCC
129 TTCGACGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
10977919 TTTATATTGG-CCCTATCCCTCATCATACCCCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
193 CTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
10977983 TTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTTTGAAATGAGGACACTTTTTTCAAATGGTG
258 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
10978048 ACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
323 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * *
10978113 ATCACGTCTAGCAAGGTTGGGTCCAAAATTCCTTCCAAAAAAATTTGAAAAAATCCCGAACCGCA
388 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCA
* *
10978178 AAAAGTTTCAAAAATCATGAAAAA-A-AAAATGAGTCGTCTTGCCATGAAACTTCACGTAAAGGC
453 AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * *
10978241 TTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTAGCACATAGAAATATGATGAT
518 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
* *
10978306 GTGCCTAAAGCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGTA-G
583 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-ACG
* * * *
10978370 TAGTGCCCGCTCGCCCGTCCGCTCATTTCGTCGATTGGCTTAGGCATGCTGAGTTCATTCCCAGT
647 TAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * *
10978435 CTAAGATCAGACCAGATCAAGGGTTGCGACAGCAGGATCGATAGCATGCAGAGGGGGACCCGACC
712 CTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACC
* * * * *
10978500 GATCCTCGGCTTACGCATGCC-GCCCATCTAGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGAGT
776 GATCCTCGGCTTGCGCAT-CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
10978564 TGACTTAGGCATATAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATC
840 TGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * ** * *
10978621 TAAGATCGGACCCGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCA
1 TAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * * *
10978686 TTTTTCTTTGTTGGGGCACCATCGTCGGAGCATTG-TCGAAGAACCTGACCGACGTCATTGGGGT
66 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGT
* *
10978750 TCTGACGATCGAGGGGTCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
130 TC-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
10978815 TTATATTGGCCCCCTATCCCTCATCAAACGTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
194 TTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
10978880 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
258 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * *
10978945 ACAAAATCTTGTACACTTCGAGTTTCTAGCTCAAATTTTTTGTGCAGGCCAACAAAAATACAAGG
323 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * *
10979010 ATCATGTCTACCAAGTTTGGGGCCAAAAGTCCTCCCAAAAAAATTTTAAAAAATCCCGAACCACA
388 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCA
* * **
10979075 AAAAGTTTTAAAAATCGTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
453 AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
10979140 TTAAGGGACCATTGTAGGAATTTACCAGCCATAAAAATGGCATTGGCA-AGCAGAAATATAAAGA
518 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-CAGAAATATGAAGA
* * * * *
10979204 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTAGCGCATCCCGTTTCTCTGGCCGGCA
582 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* *
10979269 TAGTGCCCGCCCGCCCGCCCGCCCGTCCGCTTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAT
647 TAGTGCCCGCCCGCCCGCCCG--C-T-C-ATT------TCG--TCG--A-TTGGCTTAGGCATAC
* ** ***
10979334 GAAGTTCATTCCCAGTCTAAGATTGGATTGGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGC
696 GGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGACAGCATGC
* * * *
10979399 AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCAC
760 AGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
10979464 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTGATT
825 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
*
10979529 CCTAGTC
890 CCCAGTC
*
10979536 TAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
1 TAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * ** * ** *
10979601 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCGTCGCCAGAGAACCTGACTGGCAACATTGAGGTT
66 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTT
10979666 CCGACGAT---------CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
131 -CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
10979722 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAATAGCATTTTAGAT
195 TATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
10979786 TTTACAAGATTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
259 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
10979851 CAAAATCTTGTACACTTCGAATTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA
324 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* **
10979916 TCACGTCTACCAAGGTTT-GGGCCAAAATTATTTCCAAAAAAATTTTAAAAAATCCCGAACCGCA
389 TCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCA
*
10979980 AAAAGTTTCTAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
453 AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
**
10980045 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
518 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
* * *
10980110 GTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATCCCGTCTCTCTGGCCGGCGT
583 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * *
10980175 AGTGCCCGCCCACCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
648 AGTGCCCG----CCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCC
** *** * * ** * ** *
10980240 AGTCTAAGATTGGATTGGACCGAGGGTTGTGGCAGTAGGATCGGTAACACACAGAAGGGGACCCG
709 AGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCG
* * * * * * * * * *
10980305 GCTGATCCTCGACTTTCGCATCCAGCCCTTCTAGCCGACTGAGCGCCCGTACGCTCATTTCGTGG
773 ACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
10980370 GTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTC
838 GTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
10980429 TAATATCCGATCGGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
1 TAAGATCAGACCAGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
10980493 ATTTTTCTTCG-CTGTGGCACCATCGT-----CA------GAGAACCTGACTGGCGACATTGAGG
65 ATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGG
* * *
10980546 TTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGCGTGATGGGTGCTGGTACAT-GCC
129 TT-CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
10980609 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
193 CTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
10980674 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTAGT
257 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
10980739 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAAAAAAAATACAAG
322 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * *
10980804 GATCACGTCTACCAAGTTT-GGGCCAAAACACCTTCCCAAAAAATTTTAAAAAATCTCGAACCGC
387 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGC
* * *
10980868 AAAAATTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
452 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * ** *
10980933 CTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATCGCATTGGCACGGAGAAATATAAAGA
517 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
*
10980998 TGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
582 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
*
10981063 TAATGCCCGCTCGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
647 TAGTG--C-C-CGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* ** * * * * *
10981128 CAATCTAAGATTGGATCAGACCGAGGGTTGCGGCAACAGGATC-ATTAGTATGCAGAGGGGGGCC
708 CAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGA-CAGCATGCAGAGGGGGACC
* * * *
10981192 TGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCCGCTGAGCGCCCGCACGCTCGTTTCGT
771 CGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* *
10981257 GGGTTGACTTAGGCATATGGAGTTCATTCCCAG-CTTAAGCATACGGAGTTCATTCCTAATC
836 GGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC-TAAGCATACGGAGTTCATTCCCAGTC
* * * * *
10981318 TAAGATCAGACCGGACCGGGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
1 TAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * *
10981383 TTTTTCTTCATCGAGGCACCATCGCCGGAGCATCG-TCGGAGAAGCTGACCGGCGGCATT-GGGT
66 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGT
*
10981446 TCCAGCGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
130 TCGA-CGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
10981511 CTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGGG
193 CTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * * * *
10981576 ATTTTACAGGTTTGATGCCAGTAGCCAATAAAGTGTCTAAAATGGGGATACTTCTTTCAAACGGT
257 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
10981641 CATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
322 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
** *
10981706 GATCACGTCTAAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
387 GATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCG
* * * *
10981771 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATTAAACTTCACGTGAAG
451 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
** **
10981836 GCTTAAGGGACCATTGTATGAATTTAGGAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
516 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
* * *
10981901 ATGTCCCTAAACCCAACTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
581 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * ** * * *
10981966 ATAGT--------GCCCGCCCGCTCGTTTCGTCGGCTGGCTTAGGCAAATGGAGTTCATTCCTAG
646 GTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAG
* * *** * * *
10982023 TCTAAGATCAGATCGGACTGAGGGTTGCCATAGCAGGATCAACAGCATGTAGAGGGGGACCCTAC
711 TCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGAC
* * * * * * *
10982088 CGGTCCTCAGCTTGCACATCCTGCCCCTCTGGCTGGCTGAGCGCTCGCATGCTCGTTTTGTGGGT
775 CGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
10982153 TGACTTAGGCATACT-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATC
840 TGACTTAGGCATA-TGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * *
10982210 TAAGATCGGATCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACA
1 TAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * * *
10982275 TTTTTCTTCGTCGGGGCACCATCGTAGGAGCATCACCGGAGAACTTGACCAGCGGCATTAGGGTT
66 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTT
* *
10982340 CCAGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
131 CGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
10982405 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCGTTTGAGAT
195 TATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
**
10982470 TTTACAGGTTTTATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
259 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
10982535 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCTACAAAAATACAAAGA
324 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * ** *
10982600 TCACGTCTACCAAGTTTGGGTCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAA
389 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAA
* *
10982665 AAAGTTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGAC
454 AAAG-TTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
10982730 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGAT
518 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
* *
10982795 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTTTCTCTGGCCGACGT
583 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * *
10982860 A-TTCCTCGCCTGCCCGCCCGCTCATTTCGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCATT
648 AGTGCC-CGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * * * *
10982924 ATAAGATCAAACCAAAGTGAGGGTTGCAGTAGTAGGATC-AGCAGCACGTAGAAGGGGACCCGAC
712 CTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGA-CAGCATGCAGAGGGGGACCCGAC
*
10982988 CGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGGCCGCACGCTCGTTTCGTGGGT
775 CGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
10983053 TGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTC
840 TGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * *
10983110 TAAGATCAGATCAGACCGAGGG-TGACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGC
1 TAAGATCAGACCAGACCGAGGGTTG-CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* ** * *
10983174 ATTTTCCTTCACCGGGGCA--A----C--ATCA-C-C-GAAGAACCTGACCGGCGGCATTGGGGT
65 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGT
* *
10983228 TCCGATGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
130 T-CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
10983293 TTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
194 TTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
10983358 TTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTC
258 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
10983423 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAGAAGG
323 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * ** *
10983488 ATAACGTCTACCACGTTTGGGGCCAAAAGACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCA
388 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCA
* * * * *
10983553 AAAACTTTCAAAAATTGTAAAAAATAGAAAATGAGTCGTCTTGCCATTAAACTTCATGTGAAGGC
453 AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
10983618 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACACACAAATATGAAGAT
518 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
* *
10983683 GTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCCGCATCCCGTCTCTCTGGCCGACG
583 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCCCGTCTCTCTGGCCGACG
* * * * *
10983748 TAGTGCCTTCCCGCCCACCTGCCCGCTCATTTCGTCGACTGGCTTAGGAATGCGGAGTTCATTCC
647 TAGTG----CCCGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * *
10983813 TAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGAAGGATAGACAGCACGTAGA-GGGGACCC
708 CAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCC
* * * * * ** **
10983877 GGCCGATCCTCGGCTTGCGCATCCCGCTCTTTTGGCCGATTGAAAGCCCGCACGCTCGTTTCGTG
772 GACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
10983942 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTC
837 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * ** * * * * * *
10984002 TAAGATCGGACCGGATTGAGGGTTCCGGCAGCGCATGCTGGGCTCGGGCATGTGCTGGCGTCGTA
1 TAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
** *
10984067 TTTTTCTTCACCGGGGCACCA---TC---G--T--C-GGAGAACCTGACCGGCGGTATTGGGGTT
66 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTT
* * *
10984121 CTGACGATCAGGGGGGGCGGGGCGGGGTGTGCACACATGATGTGCGGTGGGTGCTGGTACTTGGC
131 C-GACGATC-GGGGGGGC-CGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
10984186 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAAAGCATTTGA
192 CCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
10984251 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
256 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
10984316 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAA
321 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * ** * *
10984381 GGATAATGTCTACCAAGTTTGGGGCCAAAAAACCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
386 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCG
* * * *
10984446 TAAAAATTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGCCATTAAACTTCACGTGAAG
451 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * ** *
10984511 GCTTAAGGGACTATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
516 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
* * * * **
10984576 ATATGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCTAAC
581 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
10984641 GTAGT
646 GTAGT
10984646 TCATTCCCAG
Statistics
Matches: 6167, Mismatches: 633, Indels: 250
0.87 0.09 0.04
Matches are distributed among these distances:
882 34 0.01
888 158 0.03
889 910 0.15
890 198 0.03
891 60 0.01
892 947 0.15
893 394 0.06
894 36 0.01
895 509 0.08
896 452 0.07
897 281 0.05
898 10 0.00
899 430 0.07
900 305 0.05
901 174 0.03
902 232 0.04
903 10 0.00
904 228 0.04
905 381 0.06
906 93 0.02
907 1 0.00
909 11 0.00
910 3 0.00
912 3 0.00
914 4 0.00
915 302 0.05
916 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
TAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTT
CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAA
AGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
GCCCGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCAGACGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCC
TCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
AGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
Found at i:10979517 original size:26 final size:26
Alignment explanation
Indices: 10979487--10979539 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10979477 GTTGACTTAG
10979487 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
10979513 GCATACGGAGTTGATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10979539 G
1 G
10979540 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10980416 original size:26 final size:26
Alignment explanation
Indices: 10980380--10980431 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
10980370 GTTGACTTAG
*
10980380 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
10980406 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
10980432 TATCCGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:10982190 original size:26 final size:26
Alignment explanation
Indices: 10982161--10982213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10982151 GTTGACTTAG
* *
10982161 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10982187 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10982213 G
1 G
10982214 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10983097 original size:26 final size:26
Alignment explanation
Indices: 10983061--10983113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10983051 GTTGACTTAG
*
10983061 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10983087 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10983113 G
1 G
10983114 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10983989 original size:26 final size:26
Alignment explanation
Indices: 10983953--10984005 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10983943 GTTGACTTAG
10983953 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10983979 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10984005 G
1 G
10984006 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10986437 original size:26 final size:26
Alignment explanation
Indices: 10986401--10986453 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10986391 GTTGGCTTAG
10986401 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10986427 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10986453 G
1 G
10986454 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10986785 original size:899 final size:895
Alignment explanation
Indices: 10984742--10987925 Score: 4176
Period size: 911 Copynumber: 3.5 Consensus size: 895
10984732 ACCGGGGCAC
* *
10984742 CATCGTCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGC
1 CATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* *
10984806 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCTTATCCCTCATC-AACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
10984870 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
10984935 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
196 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
10985000 TGAATTTTTTTGTGCATGCCAAAAAAAATAGAAGGATAACGTCTACCAAGTTTGGGGCCAAAACA
261 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATAACATCTACCAAGTTTGGGGCCAAAA-A
* * * * *
10985065 -CCTTTCAAGAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTAAAAAATAGAA
325 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCGTAAAAAATAG-A
* * *
10985129 AATGAGTCGTCTTGCCATTAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** *
10985194 CATAAAAATGGCATTTTACAC-ACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
454 CATAAAAATGGCA-TTGGCACTAAAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGA
* * ** * * *
10985258 TCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTTCCTGC-CCACTCA--TTTCGT
517 TCCACGGCTTGCGCATCCCGTCTCTCTGG-CTGCGTAGTGCCCGCCCGCTCCCCGCATGTTTCGT
*
10985320 CGGTTGGCTTAGGCATACGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAG
581 CGGTTGGCTTAGGCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAG
** * * * *
10985385 CAGGATCGATTAGCACGTAG-AGGGGACCCAATCCGACTCCTCAGGCTGTGCGCATCCCGCTCTT
646 CAGGATC-AACAGCACGCAGAAGGGGACCCGA-CCGA-TCCTCAGGCT-TGCGCATCCCGCCCCT
* * * *
10985449 CTGGCCCAGGGCTGAGAGCCCGC-CTGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
707 ATGG-CC-GGACTGAGAGCCCGCAC-GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * *
10985513 CCCACGTCCTAAGCATATGCGACGTTCATTCCCACATCCAAGATCGAACCGATTGAGGGGTTGCG
769 CCCA-GT-CTAAGCATATG-GA-GTTCATTCCCA-GTCTAAGATCGGACCGATTGA-GGGTTGCG
* * * *
10985578 ACAGCA-ATGGCTGGGCTCGGGCAAGTGCCGGTGCCGTATTTTTCTTCG-TCGAGGCACCATCGC
828 ACAGCACAT-GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGC
10985641 CGGAG
891 CGGAG
** * * * *
10985646 CATCACCGGAGAATCTGACCGACGGCATTGGGGTTCCGACGATCGTGGGGG-CAGGGGGGTGTGC
1 CATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* * *
10985710 ACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
10985775 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
10985840 AGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGC
196 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
10985905 TGAATTTTTTTGTGCATGCCAAAAAAAATAGAAGGATAACATCTACCAAGTTTGGGGCCAAAACA
261 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATAACATCTACCAAGTTTGGGGCCAAAA-A
** *
10985970 -CCTTCCAAAAAAATTTTAAAAAATCTTGAACTGCAAAAACTTTCAAAAATCGTAAAAAATAGAA
325 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCGTAAAAAATAGAA
* * *
10986034 ACTGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTGCAAGC
390 AC-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
10986099 CATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTACCTAAACCCACCTACCATCCTATCGA
454 CATAAAAATGGCATTGGCAC-TAAAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGA
*
10986164 TCCACGGCTTGCGCATCCCGTCTCTCTGGCTAACGTAGTGCCCGCCCGCTCACCCGCATGTTTCG
517 TCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GCGTAGTGCCCGCCCGCTC-CCCGCATGTTTCG
* * *
10986229 TCGGTTGGCTTATGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGC
580 TCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGC
* **
10986294 AGCAGGATCAACAGCACGCAGAAGGGGACCCGACCGATCCTC-GACTTTTGCATCCCGCCCCTAT
644 AGCAGGATCAACAGCACGCAGAAGGGGACCCGACCGATCCTCAGGCTTGCGCATCCCGCCCCTAT
* *
10986358 GGCC-GACTGAGAGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
709 GGCCGGACTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
10986422 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAATTGAGGGTTACGACAGCACATA
774 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCG-ATTGAGGGTTGCGACAGCACATG
* *
10986487 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTGGCTGGGGCACCATCACCGGAG
838 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAG
* * ** * * *
10986545 TATCGTCGGAGAACCTGATCGGTGGCATTTAGGTTCTGACGAT-AGGGGGGCCGGGGGGGTGTGC
1 CATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
10986609 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
10986674 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
10986739 AGTGT-TAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
196 AGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * **
10986803 TTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTGCCAAGTTTGGGAACAAAA
260 CTGAATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATAACATCTACCAAGTTTGGGGCCAAAA
** * ** * * *
10986868 ATCCTTCTGAAAAAATTTTAAAAACTCTTGAACCACAAAAAGC-TTCAAAAATCATGAAAAATAA
324 ATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-CTTTCAAAAATCGTAAAAAAT-A
* *
10986932 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAA
387 GAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* ** *
10986997 GCCATAACAATTTCATTGGCACTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATC
452 GCCATAAAAATGGCATTGGCAC-TAAAAATATGAAGATGTGCCTAAACCCACCTACCAC-CTATC
*
10987062 GATCCACGGCTTGCGCATCCCGTCTCTTTGGCCTGCGTAATGCCGGCTCGCCCGCTCTCCGCTCT
515 GATCCACGGCTTGCGCATCCCGTCTCTCTGG-CTGCGT-A-----G-T-GCCCG--C-CCGCTC-
* * * *
10987127 CCCGC-TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGAATCAGA
567 CCCGCAT-GTTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGA
** * * * * *
10987191 CCGAGGGTTGTGGCAATAGGATC-GCTAGCATGCAGAGGGGGGCCCGACCGATCC-CTGGCTTGC
630 CCGAGGGTTGTGGCAGCAGGATCAAC-AGCACGCAGAAGGGGACCCGACCGATCCTCAGGCTTGC
* * * *
10987254 GCATCCTGCCCCTTTGGCCGGA-TGAGCGCCCGCACGGTCGTTTCATGGGTTGACTTAGGCATAC
694 GCATCCCGCCCCTATGGCCGGACTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * * **
10987318 GAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATCGGACCGGACCGA-GG
759 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GATTGAGGG
* * * *
10987382 TTGCGACAACACATGCAGGGCTCGGGCATGTGCTGGTGCCGCAGTTTTCTTTGCTGGGGCACCAT
823 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCAT
10987447 CGCCGGAG
888 CGCCGGAG
**
10987455 CATCGTCGGAGAACCTGACCGGTGGCATT-AGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGT
1 CATCGTCGGAGAACCTGACCGACGGCATTGA-GGTTCCGACGATCGGGGGGGCC-GGGGGGGTGT
10987519 GCGCACAATGATGTGCGATGGGTGCTGGTAACTT-GCCCTTATATTGG-CCCCTAT-CCTCATCA
64 GCGCAC-ATGATGTGCGATGGGTGCTGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-
* *
10987581 AAACCTTGAGAACCTCACACCCCCTT-AAGAGCATTTGAGATTTTACAGG-TTGCTGCCTGTAGC
126 AAACCTCGAGAA-CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
10987644 CATTAAAGTGTCCTGAAATGGGGACACTTTTTTCAAATGGGT-ACAAAATC-TGTAGCACTTCGG
190 CATTAAAGTGT-CTGAAATGGGGACACTTTTTTCAAAT-GGTCACAAAATCTTGTA-CACTTC-G
* * * * *
10987707 AGTTTATAGCTGAATTTTTTTTTGCATGCC-AAAAAAATACAAGGATCAGCAT-TTCAAAGTTTG
251 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT-AACATCTACCAAGTTTG
* * * * *
10987770 GGG-TAAAAATCCTTCC-CAAAAATTTTAAAAAAAATCCCGAACGCGGAAAAAGTTTC-AAATTC
315 GGGCCAAAAATCCTTCCAAAAAAATTTT--AAAAAATCCCGAAC-CGCAAAAACTTTCAAAAATC
* * *
10987832 GTGAAAAATAGGAAACGCGTCGTCATGCCATGAAACTTCACGTGAAGGCTTTAAGGGACCATTGT
377 GTAAAAAATA-GAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGT
10987897 ATGGAATTTACAAGCCAT--AAATGGCATTG
440 AT-GAATTTACAAGCCATAAAAATGGCATTG
10987926 CCCGCCCTCC
Statistics
Matches: 2035, Mismatches: 185, Indels: 113
0.87 0.08 0.05
Matches are distributed among these distances:
898 6 0.00
899 328 0.16
900 255 0.13
901 11 0.01
902 11 0.01
903 3 0.00
904 172 0.08
905 321 0.16
906 84 0.04
907 17 0.01
908 12 0.01
909 15 0.01
910 158 0.08
911 418 0.21
912 126 0.06
913 94 0.05
914 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATAACATCTACCAAGTTTGGGGCCAAAAAT
CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCGTAAAAAATAGAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCTGCGTAGTGCCCGCCCGCTCCCCGCATGTTTCGTCGGTT
GGCTTAGGCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGA
TCAACAGCACGCAGAAGGGGACCCGACCGATCCTCAGGCTTGCGCATCCCGCCCCTATGGCCGGA
CTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
ATATGGAGTTCATTCCCAGTCTAAGATCGGACCGATTGAGGGTTGCGACAGCACATGCTGGGCTC
GGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAG
Found at i:10987342 original size:26 final size:26
Alignment explanation
Indices: 10987312--10987364 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10987302 GTTGACTTAG
10987312 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
10987338 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10987364 G
1 G
10987365 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10989307 original size:171 final size:170
Alignment explanation
Indices: 10988997--10989307 Score: 437
Period size: 171 Copynumber: 1.8 Consensus size: 170
10988987 CTCCGCACGC
*
10988997 TCGTTTCGTGGGTTGACTTGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGGACTGAGGG
1 TCGTTTCGTCGGTTGACTTGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGGACTGAGGG
* *
10989062 TTGCAGGAGCAAGATCAGCAGCACGCAAAGGGAGACCCGGCCGAACCCCGGCTTGCGTATCCCGC
66 TTGCAGGAGAAAGATCAGCAGCACGCAAAGGGAGACCCGGCCGAACCCCGGCTTGCGCATCCCGC
*
10989127 CCTTCTGGCCGGCATAGTGCCTGCTCGCTCGCCTGTCCGG
131 CCCTCTGGCCGGCATAGTGCCTGCTCGCTCGCCTGTCCGG
* * *
10989167 TCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGG-GCTGGACTGAG
1 TCGTTTCGTCGGTTGACTT-GGCATACGGAGTTCATTCCCAGTCTAAGATAGGATC-GGACTGAG
* * * * * * * *
10989231 GGTTG-TGGTAGAAAGATTAGTAGCACGTAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCC
64 GGTTGCAGG-AGAAAGATCAGCAGCACGCAAAGGGAGACCCGGCCGAACCCCGGCTTGCGCATCC
*
10989295 TGCCCCTCTGGCC
128 CGCCCCTCTGGCC
10989308 AGCTGAGCGC
Statistics
Matches: 122, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
170 19 0.16
171 103 0.84
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (170 bp):
TCGTTTCGTCGGTTGACTTGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGGACTGAGGG
TTGCAGGAGAAAGATCAGCAGCACGCAAAGGGAGACCCGGCCGAACCCCGGCTTGCGCATCCCGC
CCCTCTGGCCGGCATAGTGCCTGCTCGCTCGCCTGTCCGG
Found at i:10989383 original size:26 final size:26
Alignment explanation
Indices: 10989347--10989399 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10989337 GTTGACTTAG
10989347 GCATACGGAGTTCA-TTCCAAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
10989373 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
10989399 G
1 G
10989400 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:10990422 original size:26 final size:26
Alignment explanation
Indices: 10990386--10990438 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10990376 GTTGACTTAG
10990386 GCATACGGAGTTCA-TTCCAAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
10990412 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
10990438 G
1 G
10990439 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:10991478 original size:26 final size:26
Alignment explanation
Indices: 10991438--10991490 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10991428 GTTGACTTAG
*
10991438 GCATATGGAGCTCA-TTCCAAGTCTAA
1 GCATACGGAGCTCATTTCC-AGTCTAA
*
10991464 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGCTCATTTCCAGTCTAA
10991490 G
1 G
10991491 ATCGGATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTTCCAGTCTAA
Found at i:10992449 original size:159 final size:157
Alignment explanation
Indices: 10992105--10992517 Score: 458
Period size: 159 Copynumber: 2.6 Consensus size: 157
10992095 ATCGATCCAT
* * * * *
10992105 GGCTTGCGCATCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCC
1 GGCTTGCGCATCCGCCCCTCTGGCCAGC-TAGTGCCCGCCT----GCTCGTTTCGTCGATTGGCT
* *
10992170 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTATGGCAGCAAGATCG
61 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTATGGCAGAAAGATCA
*
10992235 GCAGCACGCAGAGGGGGACCCAGCGGATCCCC
126 GCAGCACGCAGAGGGGGACCCAGCCGATCCCC
* *
10992267 GTG-TTGCGCATCCCGCCCTTCTGGCCTGCATAGTGCCCGCCTGCTCGTTTCGTCGATTGGCTTA
1 G-GCTTGCGCAT-CCGCCCCTCTGGCCAGC-TAGTGCCCGCCTGCTCGTTTCGTCGATTGGCTTA
* *
10992331 GGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACTGGACTGAA-GGTTGTGGCAGAAAGATCA
63 GGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACTGGAC-CAAGGGTTATGGCAGAAAGATCA
* * * * *
10992394 GTAGCACGTAGTGGGGGACTCGGCCGATCCCC
126 GCAGCACGCAGAGGGGGACCCAGCCGATCCCC
* * * *
10992426 GGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCTGCAC-ACTCGTTTCGT-GAGTTGACTT
1 GGCTTGCGCATCC-GCCCCTCTGGCCAGCT-AGTGCCCGC-CTGCTCGTTTCGTCGA-TTGGCTT
* *
10992489 AGGCATACGAAGTTCATTCCAAGTCTAAG
62 AGGCATACGGAGTTCATTCCCAGTCTAAG
10992518 CATACGGAGT
Statistics
Matches: 216, Mismatches: 26, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
158 7 0.03
159 171 0.79
160 3 0.01
162 9 0.04
163 26 0.12
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.23
Consensus pattern (157 bp):
GGCTTGCGCATCCGCCCCTCTGGCCAGCTAGTGCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTATGGCAGAAAGATCAGCAGC
ACGCAGAGGGGGACCCAGCCGATCCCC
Found at i:10992528 original size:26 final size:26
Alignment explanation
Indices: 10992491--10992543 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10992481 GTTGACTTAG
10992491 GCATACGAAGTTCA-TTCCAAGTCTAA
1 GCATACGAAGTTCATTTCC-AGTCTAA
*
10992517 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
10992543 G
1 G
10992544 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:10993492 original size:159 final size:158
Alignment explanation
Indices: 10993215--10993569 Score: 441
Period size: 159 Copynumber: 2.2 Consensus size: 158
10993205 TCGTTTCATC
*
10993215 GGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGGTTGCGGCAG
1 GGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAG
*
10993280 CAAGATCGGCAGCACGCAGAGGGGGACCCAGCGGATCCCCGTGTTGCGCATCCCGCCCTTCTGGC
66 CAAGATCGGCAGCACGCAGAGGGGGACCCAGCGGATCCCCGTGTTGCGCATCCCGCCC-CCTGGC
* * * * * *
10993345 C-GGTATAGTGCCCGCCTGCTCGTTCCGTT
130 CAGCT-GAGCGCCCGCATGCTCATTCCGTG
* * **
10993374 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT-AGGATCGGACCGAA-GGTTTTGGC
1 GGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GATCGGACC-AAGGGTTGCGGC
* ** *
10993437 AGCAAGATCGGTAGCACGCAGAGGGGGACCC-GATTGATCCCCG-GCTTGTGCATCCCGCCCCCT
64 AGCAAGATCGGCAGCACGCAGAGGGGGACCCAG-CGGATCCCCGTG-TTGCGCATCCCGCCCCCT
* *
10993500 GGCCAGCTGAGCGCCTGCATGCTCATTTCGTG
127 GGCCAGCTGAGCGCCCGCATGCTCATTCCGTG
* *
10993532 GGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAAG
1 GGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAG
10993570 CATACGGAGT
Statistics
Matches: 169, Mismatches: 22, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
158 60 0.36
159 107 0.63
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAG
CAAGATCGGCAGCACGCAGAGGGGGACCCAGCGGATCCCCGTGTTGCGCATCCCGCCCCCTGGCC
AGCTGAGCGCCCGCATGCTCATTCCGTG
Found at i:10993572 original size:26 final size:26
Alignment explanation
Indices: 10993543--10993595 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10993533 GTTGACATAG
10993543 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
10993569 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10993595 G
1 G
10993596 ATCCGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10998871 original size:26 final size:26
Alignment explanation
Indices: 10998842--10998894 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10998832 GTTGACTTAG
10998842 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
10998868 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10998894 G
1 G
10998895 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11000847 original size:877 final size:874
Alignment explanation
Indices: 10993569--11004146 Score: 12857
Period size: 877 Copynumber: 12.0 Consensus size: 874
10993559 CCCAGTCTAA
* * * * * *
10993569 GCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACCGAGGGTTGGGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
10993634 CTCGGGCATGTGCTGGTGCCGCATTTTTGTTCGTCGGGGCACCATTGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
* *
10993699 ACCTGACCGACGGCATTGAGGTTTCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
* * **
10993764 GGTGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTTTCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
10993829 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
10993894 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
10993959 GCATGCCAACAAAAATACAAGGATCATGACTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
10994024 TTTCTAAAAAATCTCGAAACGT-AAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 TTT-TAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
10994088 GCCAAGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
10994153 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAGCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
10994218 CATCTCGTCTCTCTGGCTGGCGTAGTGCCCGCCCACCCGCCTGCCTGTTCATTTCATCGGTTGGC
649 CATCCCGTCTCTCTGGC-GACGTAGTGCCCGCCCGCCCGCC-GCCCGCTCGTTTCATCGGTTGGC
* * * * * *
10994283 TTTGGCATATGGAGTTCATTCTC-GATCTAAGATTGGACCAGACCGAGGGTT------GC--GA-
712 TTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * ** *
10994338 C---AGCACGCAGAGGGGGACCCAATCGATCCCCGACTTGCGTATCCCGCCTTTCTAGCCTG-CT
776 CGGTAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GACT
* * *
10994399 GAGCACCCGTACGCTCGTTTCTTGGGTTGACTTAG
840 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
10994434 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
10994499 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCG-TCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCGGAG
* * **
10994563 AACCTGACCGGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
10994628 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
10994693 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
*
10994757 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
10994822 TGCATGCCAACAAAAATACAAGGATCATGACTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
10994887 ATTTCTAAAAAATCTCGAAACGT-AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 ATTT-TAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
10994951 TGCCAAGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
10995016 AGTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAGCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
10995081 GCATCTCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGTCCGCTCATTTTATCGGTTGG
648 GCATCCCGTCTCTCTGGC-GACGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCATCGGTTGG
* ** * *
10995146 CTTTGGCATACGGAGTTCATT-CTTGATCTAAGATCGGACCAGACCGAGGGTTGC-G-A-CA-G-
711 CTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGA
* * *
10995205 -C---A-CA--CAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCTTCTAGCCTG-C
775 TCGGTAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GAC
* * * *
10995262 TGAGCACCTGTACGCTCGTTTCTTGGGTTGACTTAG
839 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
10995298 GCATACGGAATTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
10995363 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCG-TCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCGGAG
* * **
10995427 AACCTGACCGGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
10995492 GCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
10995557 CACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* *
10995622 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTAGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
10995687 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CACTTCCGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCCGAAA
* * * *
10995751 AAATTTTAAAAAATCTCGAATCGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
10995816 TTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
10995881 TATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
10995946 CGCATCCCGTCTCTCTGGTCGACATAGTGCCTGCCCGCCTGCCCACCCACTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGG-CGACGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCATCGGTTG
* * * ** * *
10996011 GCTTACGCATACAGAGTTTATTCCCAGTCTAAGATC-AGACCAGACCAAGGGTTGCGGAAGTAGG
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGGCAGCAGG
* * * * * * * * *
10996075 ATCGGTAACACACAGAGCGGGACCCGGCCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGTCGAC
774 ATCGGTAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * * *
10996140 TGAGTGCGCGCACGTTCTTTTTATGGGTTGACTTAG
839 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
10996176 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCCAAGATCGGATCGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---A---TC-G-----GA-C----CGGAC
* * *
10996241 CGAGGGTTGCGGCAGCACATGCTGAGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCAGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** * *
10996306 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCTGACGATCGGGGGGG
105 CACCATCGCTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG
* * * * * *
10996371 CCGGTGGGGGTGTACGCACATTATGTGTGTTGGGTGCTGGTACTTGGCCCTTAAATTGACCCCCT
169 CC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
10996436 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
10996501 GCCAGTAG-CATTAAAGTATCTAAAATGGGGATAGTTTTTTCAAATGGTCACAAAATATTGTACA
297 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
10996565 CTTCGAGTTTTTAGTTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
362 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
10996630 TTTGGGGCTAAAACTCCCTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAT
427 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAAT
* * *
10996695 CGTGAAAAATAGAAAATGAGTCGTCTTGCCAAGAAATTTCACGTGAAGGCTTAAGGGACCATTGT
492 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
10996760 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG-CTAAAACCCAC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCAC
* ** *
10996824 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTGTGGCCGGTGTAGTGCCTGCCCG--
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGCCCGCCCGCC
* * * * * *
10996887 C-CCGCCCGCTCGTTTCATCGGTTGGCTTTGGCATACGGAGTTTATTCTCAATCTAGGATCGGAC
685 CGCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
* * * ** * * * * *
10996951 CGGA-TCAGGGGTTGCGGCAGCAAGATCGACAGCATGCAGAGGGTGACCCAGTCGAACCTCGACT
750 CAGACTGA-GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCT
* * * * *
10997015 TACTCATCCTGCCTCTCTGGCC-AGCTGAGCGCCCGCACGGTCGTTTCATGGGTTGACTTAG
814 TGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
**
10997076 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
10997141 CTCAAGCATGTGGTGGTGCCACATTTTTCTTCGTTGGGGCACCAT--C----GC-T-A---GAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
* * * * * *
10997195 ACCTAATCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTG
* * ** *
10997260 CTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTAAGAACTTAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
10997325 ACCGCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
*
10997390 GGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTT-GCCTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-CTGAATTTTTTT
* * * *
10997454 GTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAGA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
10997519 AATATTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
10997584 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
10997649 ATTGGCATACAGAAATATGAAGATGTG-CTAAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 ATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
10997713 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-TC-CAC-CCACCCGCTCGTTTCATCGGTTGG
647 CGCATCCCGTCTCTCTGG-CGACGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCATCGGTTGG
* *
10997775 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACTGAGGGTTGTGGCAGTAGGA
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGGCAGCAGGA
* * * * * * * * *
10997839 TCGATAGCGCGCAGAGGTGTACCC-GACTAATCCCCGACTTACGCATCCCACCCCTCTGGCCGAC
775 TCGGTAGCACGCAGAGGGGGACCCAGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
*
10997903 TGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAG
839 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* **
10997939 GCATACGGAGTTTATTCTTAGTCTAAGCATACGAAGTTCATTCCCACTCTAAGATCAGACCAGGC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---------AC-C---G----G---A--C
* ** *
10998004 CGAGGGTTACGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** * ** * * *
10998069 CACCATCGCCAGAGCATCACCGAAGAACCTGACCGGTGGCATTGGGGTTTCGACAATCGGCGGTG
105 CACCATCGCTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGG
* * *
10998134 CCAGGGGGGTGTGCACACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTA
169 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * * *
10998199 TCCCTCATCAAACCTCAAGAACTCGCACCCCTTTAAAGAGCATATGGGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
10998264 CCAGTAGCCATTTAAGTGTCTAAAATGAGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
10998329 TTCGAGTTTTTAGTTGAATTTTTTTATGCATGACAACAAAAATACAAGGATCACATCTACCGAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
10998394 TTGGGTCCAAAACTCCTTCCGAAAAAAGTTTAAAAAATC-CTAAACCGTAAAAAGTTTCAAAAAT
428 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTTAAAAAT
*
10998458 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGT
492 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * **
10998523 ATGAATTTACAAGCCATAAAAATGGCAATGGCACGCAGAAATATGAAGATGTGCCTAAATTCACC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
10998588 TATCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCACGCCC
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-GACGTAGTGCCCGCCCGCCC
* * * * *
10998653 GCCCGTCCGTTCTTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGAC
686 G-CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
* * *
10998718 C-GAACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGC
750 CAG-ACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAG-TCGATCCCCGGC
* * * * * * * * *
10998781 TTGTGCATCCCGTCCCTCTGGCTGGC-AAGCGCCCGTACGTTCATTTCGTGGGTTGACTTAGGCA
813 TTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC-T-----
10998845 TACG
872 TA-G
*
10998849 AAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
1 --G--------CA---T-A-C----GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* ** *
10998914 TACGATAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
47 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
** * ** * *
10998979 G-TCGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCCGGTGGTCGGGGGGTCGGGGG
112 GCT-GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGG
* * *
10999043 GTGTGCACACATGATTTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
176 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
10999108 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
241 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
10999173 CTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
306 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * **
10999238 TTTAGCTGAATTTTTTTATGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGTG
371 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
10999303 AAAACTCCTTCTGAAAAAATTTTAAAACATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
436 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAA
10999368 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
501 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** * * ** *
10999433 CAAGCCATAAAAATGGCATTGGCACACAAAAATATGAATAAATGGCTAAACCCACCTACCACCCT
566 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
10999498 ATCGATCCACGGCTTGCACATCTCGTCTCTTTGGCGGACATAGTGCCTGCCCGCCCGCCCGCCCG
631 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-GACGTAGTGCCCGCCCGCCCG-CCGCCCG
** *
10999563 CTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATC-AGACC-GAACTG
694 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAG-ACTG
* * * ** * **
10999626 ACGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTATGCATC
757 AGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATC
* * * * * * *
10999691 CCACCTCTTTGGTC-AGCTGAGCGCCCGCGCACTCGTTTCGTGGGTTGACTTAG
822 CCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * * ** * *
10999744 GCATACAGAGTTTATTCCCAGTTTAAGATCGAACCAGACCGAGGGCTATGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * * **
10999809 CTCAGGCACGTGCTGGTCCCGTATTTTTCTTCCTCGGGGCTCCATC-ATCGGAGGATCGCTAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCGGAG
* * * * * * * *
10999873 AACCTGA-CTAGCGGCATTAGAGTTCTGACAACCGGGGGGCCGAGGGGTGTGCTCACATGATGTG
130 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
10999937 CGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
11000002 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
*
11000067 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
11000132 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGAACCAAAAATCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
11000197 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
11000262 GCCATGAAACTTTACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAAATGGC
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGC
* * *
11000327 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGTTCCACGGCTTGT
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
11000392 GCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGG-CGACGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCATCGGTTGG
* * * *
11000457 CCTAGGCAGACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGTAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * * *
11000522 CAGTAGCACGTAAAGGGGGACCCAGTCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGTCGACTG
776 CGGTAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * *
11000587 AGCGCCCGCATGCTCGTTTCGTCGGTTGACTTAG
841 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
** * *
11000621 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATGGAGGGTTGGGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11000686 TTCGGGCATTTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
* ** * * * *
11000751 TCCTGATTGATGGCATTAGGGTTCCGACGATCGGGGGGCCCAGGGGG-GTGCACACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGC
* * * *
11000815 CATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACT
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
11000880 GCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* * * * *
11000945 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTCGTTGAATGTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
11001010 GCATGGCAA-AAACAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
390 GCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
11001074 ATTTTAAAAAATCTTGAACCGCAAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
11001139 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
11001204 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
11001269 CATCCCGTCTCCCTGGCCGACGTAGT----GCCCG--C-CCGCCCGCTCGTTTCATCAGTTAGCT
649 CATCCCGTCTCTCTGG-CGACGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * *
11001327 TAGGCATACGAAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAAGGTTGCGGTAGCAGGATC
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGGCAGCAGGATC
** * * * * * * * * * *
11001391 GACAGCACGTAGAGGCGGACTC-GACCAATCCCCAGCTTGTGTATCCCACCCCTCTGGCCGGCTG
777 GGTAGCACGCAGAGGGGGACCCAG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
*
11001455 AGCGCCCGCATGCTCGTTTCATGGGTTGACTTAG
841 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
11001489 GCATACGAAGTTGATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGGAC
1 GCATAC---G--G------AG--T-----T-C--A-TTC---CC-AGTCTAAGATCGGACCGGAC
* * * * * *
11001554 CAATGGTTGGGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAG-ATTTTTCTTCGTCGAG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GCATTTTTCTTCGTCGGG
* * * *
11001618 GCACCATCGCCGGAGCATCATCGGAGAACCTGATCGACGGCATT-AGGTTCCGACGATCGAGGGG
104 GCACCATCGCTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGG
* *
11001682 GCCAGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGG--C--------G---CTT
168 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
**
11001734 AT-CCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
11001798 GCCAGTAGGCGTTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACA
297 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
11001863 CTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAG
362 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** * * * *
11001928 TTTGGAACCAAAAATCCTTTCGAAAAAATTTTAAGAAATC-CTGAACCGCAAAAAGTTTTAAAAA
427 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTTAAAAA
* * *
11001992 TCATGAAAAATA-AAAATGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTG
491 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
11002056 TATGAATTTACAAGCAATAAAAATGGCATTGGCATGCAGAAATTTAAAGATGTGCCTAAACCCAC
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
11002121 CTAGCACCCTATCGTTCCACGGCTTGTGCATCCTGTCTCTCTGGTCGACGTAGTGCCCACCCGCT
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGCCCGCCCGCC
* * *
11002186 CGTCCGCCTGCTCTTTTCATCGGTTGGC-TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAA
685 CG-CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
* * * * *
11002250 CCAGACTGAGGGTTGCGGCAGCAAGATCAGTAGCACGTAGAGGGGGACCCAATC-ATCCCTGGCT
749 CCAGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCT
* * * * *
11002314 TGCACATCCTGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
814 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
11002375 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGGGGCACCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
11002440 CTCGGGCATTTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
* * ** ** *
11002505 TCCTGATCGGTGGCATTGGGGTTTTGACGATCGGGGGGCCCGAGGGG-GTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGC
*
11002569 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACT
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
11002634 GCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTACAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* * *
11002699 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGC
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
11002764 GAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
11002829 TTTTAAAAAATCTAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAAACGAGTCGTCTT
455 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAAT-AGAAAACGAGTCGTCTT
11002894 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
11002959 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTGCT
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
11003024 TATCCCGTCTCCCTGGCCGGA-GTAGT----GCCCG--C-CCGCCCGCTCGTTTCGTCGGTTAGC
649 CATCCCGTCTCTCTGG-C-GACGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCATCGGTTGGC
* * *
11003081 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATC
* * * * * * * * * *
11003146 GGCAGCATGTAAAGGTGGACCC-GACCGAT-CCCAGCTTGCGTATCCCGCTCCTCTGGCCGGCTT
777 GGTAGCACGCAGAGGGGGACCCAG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC-T
* * *
11003209 GAGCGCCCGTATGCTCGTTTCATGGTTTGACTTAG
840 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
11003244 GTATACGGAGTTGATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGAACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG---ATCG-G---A---C----C---G---G-ACC-G--
* ** * *
11003309 CAATGGTTGCGATAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCAG-A-TTTTCTTCG-CTGG
42 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GCATTTTTCTTCGTC-GG
* * * * * *
11003371 GGCACCATCACCGGAGCATCACCAGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATTGGGGG
103 GGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* * *
11003436 GCCAGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCTTA
168 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
11003500 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
11003565 CCAGTAGGCGTTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
11003630 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
11003695 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATGC-CGAACCGCAAAAAGTTTCAAAAAT
428 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTAAAAAT
* * *
11003759 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGT
492 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
11003824 ACGAATTTTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCA
557 ATGAA--TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
** * * ** *
11003889 CCTACCACTTTATTGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGGTGTAGTGCCCGTCCG-
620 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGCCCGCCCGC
*
11003953 -C-CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-AG
684 CCGCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-
* * * *
11004015 ACCGGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGC
748 ACCAGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGTCGATCCCCGGC
* * *
11004080 TTGCGCATCCTGCCCCTATGGCCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
813 TTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
11004142 GCATA
1 GCATA
11004147 TCTTCATTTG
Statistics
Matches: 8492, Mismatches: 948, Indels: 513
0.85 0.10 0.05
Matches are distributed among these distances:
859 35 0.00
860 122 0.01
861 17 0.00
862 123 0.01
863 564 0.07
864 689 0.08
865 458 0.05
866 386 0.05
867 33 0.00
868 272 0.03
869 61 0.01
870 2 0.00
871 5 0.00
872 14 0.00
873 245 0.03
874 67 0.01
875 156 0.02
876 607 0.07
877 757 0.09
878 100 0.01
879 5 0.00
880 160 0.02
881 240 0.03
882 7 0.00
883 3 0.00
884 8 0.00
885 5 0.00
886 68 0.01
887 77 0.01
888 23 0.00
889 68 0.01
890 7 0.00
891 4 0.00
892 56 0.01
893 283 0.03
894 336 0.04
895 73 0.01
896 3 0.00
897 2 0.00
898 143 0.02
899 36 0.00
900 654 0.08
901 598 0.07
902 32 0.00
903 136 0.02
904 591 0.07
905 125 0.01
908 1 0.00
909 2 0.00
910 1 0.00
912 1 0.00
915 1 0.00
916 2 0.00
920 2 0.00
923 1 0.00
924 1 0.00
925 2 0.00
927 2 0.00
928 2 0.00
929 18 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (874 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCGACGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGTA
GCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:11001518 original size:26 final size:26
Alignment explanation
Indices: 11001489--11001541 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11001479 GTTGACTTAG
*
11001489 GCATACGAAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
11001515 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11001541 G
1 G
11001542 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11005617 original size:26 final size:26
Alignment explanation
Indices: 11005581--11005633 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11005571 GTTGGCTTAG
11005581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11005607 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11005633 G
1 G
11005634 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11007385 original size:26 final size:26
Alignment explanation
Indices: 11007346--11007399 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
11007336 TGGGTTGACA
11007346 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
11007372 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
11007398 TA
1 TA
11007400 AGATCGAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:11009171 original size:26 final size:26
Alignment explanation
Indices: 11009135--11009187 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11009125 GTTGACTTAG
11009135 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
11009161 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11009187 G
1 G
11009188 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11009954 original size:12 final size:12
Alignment explanation
Indices: 11009937--11009962 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11009927 CCGAGGGTTG
11009937 CGGTAGCAGGAT
1 CGGTAGCAGGAT
11009949 CGGTAGCAGGAT
1 CGGTAGCAGGAT
11009961 CG
1 CG
11009963 ACAGCATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.19, G:0.42, T:0.15
Consensus pattern (12 bp):
CGGTAGCAGGAT
Found at i:11012639 original size:730 final size:729
Alignment explanation
Indices: 11011963--11013395 Score: 1599
Period size: 728 Copynumber: 1.9 Consensus size: 729
11011953 ACGTGATGGC
* * *
11011963 TTAAGGGACCATTGTATGAATTTACATGCCATAAAAATATCATTAGCACATAGAAATATGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTAGCACATAGAAATATCAAGAT
* * * *
11012028 GTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGCGCATCCCGTCTCTTTGGCCTGACG
66 GTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACG
** * *
11012093 AAGTGCCCGCCTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATATAGAGTTCATTCC
130 AAGTGCCCGCCCACCCACCCGT-CGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCC
* * * ** ** *
11012158 CAGTCTAAGAT-TAGATCGGATCGAGGGTTGTGGTAGCAAGATCGGCAGCTCGCAGAGGGGGACC
194 CAGTCTAAGATCT-GACCGGACCAAGGGTTCCGACAGCAAGATCGGCAGCACGCAGAGGGGGACC
*** * * * * *
11012222 CGACCT-ATCCCTGGCTTGCGCATCTCGCCCCTCTAGCCGGTTGAGCGCCTGCACACTCGTTTCG
258 CGA-CTGATCCCCAACTTGCACATCCCGCCCCTCTAGCCGGTTGAGCACCCGCACACTCGTTTCA
11012286 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG-AT-C-G-G-A-C-C-G-GA-C-C-
322 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACTGAGTACCACAGAGACCGCT
* * *
11012339 GAGGGTTGCGGCAGCACATGTTGGGCTAGGGCATGTGTTGGTGTCAAATTTTTCTTCA-CTGGGG
387 GAGGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGTTGGTGCCAAATTTTTCATCATC-GGGG
* * *
11012403 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGTCGGTATTGGGGTTTCGATGATCAGGAGGG
451 ---CA----C----CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCAGGAGGG
* *
11012468 CCGAGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTTATATTGGTGC-CC
505 CCGAGGGAGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGTCC-TTATATTGG-CCTCC
* *
11012530 TATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGGGCATTTGAGATTTTGCAGGTTTGC
568 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * ** * *** *
11012594 TACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTAC
633 TACCAGTAGCCATTAAAGTGTCTGAAATGAGCACACTTTTTTCAAATAATCACAAAATATAGAAA
***
11012659 ACTTTGAGTTTTACAAGTTTGCTGCCAGTAGCCA
698 AC--TGAGTTTTACAAGTAAACTGCCAGTAGCCA
* * * *
11012693 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTACGTAGAAATATCAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTAGCACATAGAAATATCAAGAT
* * * *
11012758 GTTCCTAAACCCACTTACCACCCCATCGATCCACGGGTTGCGCATCCCGTCTCTCTGGCCGACGT
66 GTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGA
* * * *
11012823 AGTGCCCGCCCACCCATCCGTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCT
131 AGTGCCCGCCCACCCACCCGTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCA
* * * * *
11012888 GTCTAAGATCTGACCGGACCAAGGGTTCCGACAGTAGGATCGGCAGCACGTAGATGGGGACTCGA
196 GTCTAAGATCTGACCGGACCAAGGGTTCCGACAGCAAGATCGGCAGCACGCAGAGGGGGACCCGA
* ** * * *
11012953 CTGATCCCCAACTTGCACATCCCGCCCCTCTGGTTGGTTGAGTACCCGTACACTTGTTTCATGGG
261 CTGATCCCCAACTTGCACATCCCGCCCCTCTAGCCGGTTGAGCACCCGCACACTCGTTTCATGGG
*
11013018 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTGAGTTCATTCCCAGCTAAGATCA
326 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACTGAG-T-A---CCA-C--AG---A
* * **
11013083 GACCGGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCAT
380 GACC-G-CTGAGGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGTTGGTGCCAAATTTTTCAT
* * * * * *
11013148 CATCGGGGCACCATCACCGGAGAACTTGATCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGTCG
443 CATCGGGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCAGGAGGGCCG
* * * *
11013213 GGGGAGTGTGCGGACATGATGTGTGATGGGTGCTAGTACTTGGTGCTTATATTGGCCTCCTATCC
508 AGGGAGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGTCCTTATATTGGCCTCCTATCC
* * * *
11013278 CTCATCAAACGTTGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCA
573 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
**
11013343 GTAGCCATTAAAGTGTCTGAAATGAGCACACTTTTTTCAAATGGTCACAAAAT
638 GTAGCCATTAAAGTGTCTGAAATGAGCACACTTTTTTCAAATAATCACAAAAT
11013396 CTTGTACACT
Statistics
Matches: 590, Mismatches: 81, Indels: 50
0.82 0.11 0.07
Matches are distributed among these distances:
727 2 0.00
728 173 0.29
729 24 0.04
730 112 0.19
731 1 0.00
732 1 0.00
735 1 0.00
739 1 0.00
741 1 0.00
742 49 0.08
743 73 0.12
744 89 0.15
746 1 0.00
748 2 0.00
749 1 0.00
750 2 0.00
752 1 0.00
753 55 0.09
754 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.27
Consensus pattern (729 bp):
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTAGCACATAGAAATATCAAGAT
GTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGA
AGTGCCCGCCCACCCACCCGTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCA
GTCTAAGATCTGACCGGACCAAGGGTTCCGACAGCAAGATCGGCAGCACGCAGAGGGGGACCCGA
CTGATCCCCAACTTGCACATCCCGCCCCTCTAGCCGGTTGAGCACCCGCACACTCGTTTCATGGG
TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACTGAGTACCACAGAGACCGCTGAGG
GTTGCGGCAGCACATGCTGGGCTAGGGCATGTGTTGGTGCCAAATTTTTCATCATCGGGGCACCA
TCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCAGGAGGGCCGAGGGAGTGTGCGC
ACATGATGTGCGATGGGTGCTAGTACTTGGTCCTTATATTGGCCTCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
TGTCTGAAATGAGCACACTTTTTTCAAATAATCACAAAATATAGAAAACTGAGTTTTACAAGTAA
ACTGCCAGTAGCCA
Found at i:11013057 original size:26 final size:25
Alignment explanation
Indices: 11013027--11013078 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
11013017 GTTGACTTAG
11013027 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAG-CTAA
*
11013053 GCATACTGAGTTCATTCCCAGCTAA
1 GCATACGGAGTTCATTCCCAGCTAA
11013078 G
1 G
11013079 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGCTAA
Found at i:11013955 original size:26 final size:26
Alignment explanation
Indices: 11013919--11013971 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11013909 GTTGACTTAG
11013919 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11013945 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11013971 G
1 G
11013972 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11014425 original size:902 final size:896
Alignment explanation
Indices: 11012693--11019475 Score: 3831
Period size: 903 Copynumber: 7.4 Consensus size: 896
11012683 CCAGTAGCCA
* * *
11012693 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTACGTAGAAATATCAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGAT
* * * *
11012758 GTTCCTAAACCCACTTACCACCCCATCGATCCACGGGTTGCGCATCCCGTCTCTCTGGCCGACGT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* *
11012823 AGTGCCCGCCCACCCATCCG-TCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
131 AGTG--C-CCC-CCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * *
11012887 TGTCTAAGATCTGACCGGACCAAGGGTTCCGACAGTAGGATCGGCAGCACGTAGATGGGGACTC-
192 AGTCTAAGATCAGACCGG-CCAAGGGTTACGACAGCAGGATCGGCAGCACGTAGAGGGGGACCCG
* ** * * ** * * * * * *
11012951 GACTGATCCCCAACTTGCACATCCCGCCCCTCTGGTTGGTTGAGTACCCGTACACTTGTTTCATG
256 GTC-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTG
*
11013016 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTGAGTTCATTCCCAG-CTAAGA
320 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
11013080 TCAGACCGGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTT
385 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
* * * *
11013145 CATCATCGGGGCACCAT-------CA-C-CGGAGAACTTGATCGGCGGCATTGGGGTTCCGGTGA
450 CTTCATCGGGGCACCATCGCCGAGCATCTCGGAGAACCTGACCGGCGACATTGGGGTTCCGGTGA
* * * **
11013201 TCGGGGGGGTCGGGGGAGTGTGCGGACATGATGTGTGATGGGTGCTAGTACTTGGTGCTTATATT
515 TCGGGGGGGTCGGGGG-GTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
11013266 GGCCTCCTATCCCTCATCAAACGTTGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACA
579 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
11013331 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGCACACTTTTTTCAAATGGTCACAAAAT
644 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGCACACTTTTTTCAAATGGTCACAAAAT
* * * *
11013396 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
709 ATTGTACACTTGGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
11013461 CTACCACGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTT
774 CTACCACGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTT
** *
11013526 TTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGC
839 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
11013584 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGAATGTAGAAATATGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGAT
* * * * *
11013649 GTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTACGCATCCCTTTTCCCTGGCCGACGT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * *
11013714 AATGCCAACCCTTCCGTCCGCCCGTTCGTTTCGTCGGTTGGCATAGGCATACGGAGTTCATTCCC
131 AGTGCC--CCC--CCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * ** ** * * * * *
11013779 AATCTAAGATCGGACCAGGCCAAGGGTTGTGGTAGCAGGATCGGTAGTATGCAAAGGGGGACCCG
192 AGTCTAAGATCAGACC-GGCCAAGGGTTACGACAGCAGGATCGGCAGCACGTAGAGGGGGACCCG
* * * *
11013844 GTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCCCACGCTCATTTCGTGG
256 GTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGG
*
11013909 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGAT
321 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
11013974 CAAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
386 CAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
* * * **
11014039 TTCATCGAGGCACCATCGCCAGAGCATCATCGGCGAACCTAACCGGCGACATTGGGGTTCCGACG
451 TTCATCGGGGCACCATCGCC-GAGCATC-TCGGAGAACCTGACCGGCGACATTGGGGTTCCGGTG
*
11014104 ATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGAGATAGGTGCTGGTACTTGGCCCTTAT-TT
514 ATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATT
*
11014168 GGCCCCCTATCCCTCATCAAACCTCGAGGACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
579 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * *
11014233 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGTTCACAAAAT
644 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGCACACTTTTTTCAAATGGTCACAAAAT
11014298 ATTGTACACTTGGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
709 ATTGTACACTTGGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
* * * *
11014363 CTACCA-TTATTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
774 CTACCACGT-TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGT
* *
11014427 TTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGC
838 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
11014486 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGAT
* *
11014551 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTCGACGT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * *
11014616 AGTG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTC
131 AGTGCCCCCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
11014677 TAAGATCAGATCGAACCGAGGGTTACAACAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCG
196 TAAGATCAGACCG-GCCAAGGGTTACGACAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCG
11014742 ATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
260 ATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
* *
11014807 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GG
325 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
11014871 TCTGAACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGCCATATGCTGGTGCCACATTTTTCTTC
390 CCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
* * *
11014936 ACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACTGG-AAGCATTGGGGTTCCGGTGAT
454 ATCGGGGCACCATCGCC-GAGCATC-TCGGAGAACCTGACCGGCGA-CATTGGGGTTCCGGTGAT
* * *
11015000 CGGGGGGGTCGGGGGGTGTGTGCACATGATGTGCGATGGGTGATGGTACTTGGCCCTTATATTGG
516 CGGGGGGGTCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
11015065 CCCCCTAAT-CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAC
581 CCCCCT-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* ** * * *****
11015129 GTTTGCTGCCAGTAGCCATTAAAGTATCTG-AA-GA--AC-C--TGATC-GACGG-CATTGGGGT
645 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGCACACTTTTTTCAAATGGTCA-CAAAAT
* * ***** ** * * * ** ** * *
11015185 -TCTG-ACGA-TCGGGGGGGCCAG--GGGTG-GTATGCGC-T--C--ATGATGTGCAATGGGTGC
709 AT-TGTAC-ACTTGGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAA-GGAT-C
** * ** *** * ** ** * * * * **
11015239 TGGTACTTGGCC-C-TTATATTGGCTC-CCTCTCCCT-C-ATCAAACCTTGAGAACTCACAGCCC
770 ACGT-C-T-ACCACGTT-T-GGGGC-CAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CCGAAC
* * * * *** * * **
11015299 CTTAAAGAGCTTTCGAGATTTTATAGGT-TTGCTTCCAGTAGCCATTAA--AGT-GT-TTGGAAT
828 CATAAAAAG-TTTC-A-A----A-A-ATCATG--AAAAATAG--A-AAACGAGTCGTCTTGCCAT
* * * **
11015359 GGGGACACTTTTTTCAAATGGTCACAAAACC
879 ---GAAAC----TTC--A-CGT---GAAGGC
** * * * * * *
11015390 TT--GTACACTTCAAATTTTAGCTGAATGTTTTTATGCATGCCAACAAAAAT-ACA-AGGATCAC
1 TTAAG-GGAC--C--ATTGTA--TGAA----TTTA--CAAGCC-ATAAAAATGGCATTGGA--AT
* ** ** * * * * **** ** *** *** * *
11015451 GTA-TACCATG--TTTGGGGCC-AAA-ACTCCTTCCGAAAAAATTTAAAAAAATCTCGAACCGTA
50 GTAGAAATATGAAGAT-GTGCCTAAACCCACCTACC-ACCCTATCGATCCACGGCTTG---CGCA
**** * ** ** *** ***** * * ** *
11015511 AAAAGTTTCAAAAATCAT-G-AAAAATAGAAAACGAGTTGTCTTGCCATGAAAC-TTCACGT-GG
110 TCCCGTCTC-----TC-TGGCCGACGTAG-TGCCCCCCCGTC-CGCC-CG-CTCGTT-TCGTCGG
* * * ** * * * * * ** ***
11015572 -AGGCTTAAGGGACCAT-TGTA-TGAATTTACAAGCCATAAAAAT-GGCATTGG-CATGTAGAAA
164 TTGGCTT-A-GG--CATACGGAGTTCA-TTCCCAGTC-T-AAGATCAG-ACCGGCCA---AGGGT
* * * * ** ****** ** ** * * * **
11015632 TATGA-AG-ATG-T-GCCTA-AACCCA-CCTACCACCCTATCGATCTACAGCTTACACATCCCGT
218 TACGACAGCAGGATCGGC-AGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCAC
* * * *
11015691 CTCTCTGGCAGGC-GTAGTGCCCACCCGTCCGCCCGCTCGTTTCGTCGGTTCG-CTTAGGCATAC
282 CCCTCTGGCCGGCTG-AGTG------C--CCGCACGCTCGTTTCGTGGGTT-GACTTAGGCATAC
** * * * * * * *
11015754 AAAGTTAATT-CCAGTCTAATATCAGACTGGA--TCGAGGGTTGCTGCAG--TAGGATCGGTAAC
337 GGAGTTCATTCCCAGTCT-A-AGCATAC-GGAGTTC-A---TT-C-CCAGTCTAAGATCAG-ACC
* * * * * * * * **
11015814 ACG-CAGAGGG-TGACTTG-A-CTA-AT-C----CTC--G-ATTTAC-GTATCCCACCCCTCTGG
392 A-GACCGAGGGTTG-C-GGCAGC-ACATGCTGGGCTCGGGCATGTGCTG-GTGCCA--CATTTTT
* * * ** * * **
11015865 CTGGC-T-GAGTGCCCGCA-CGCTC--GTTTCGCGG-G---TTGACTTAG-G-CATATGGAGTTC
450 CT-TCATCG-GGGCAC-CATCGC-CGAGCATCTCGGAGAACCTGAC-CGGCGACAT-TGG-G---
* * ***** * * * * * *
11015919 ATTCCCAGTCTACGATCAAAATGGACCGAGGGT-TGCGGCAGCA-CATGCT-ACGCTCGG-GCAT
505 GTT-CC-G-GT--GATCGGGGGGGTCGGGGGGTGTGC-GCA-CATGATG-TGA-GATGGGTGC-T
* * ** ** **** * * * * * **
11015980 -GT-GTTGGTGCCTTAT-TT-TTCTTC-ACTGGGGCACCCATCGTCGGAGAACCTGCCCGACGGC
560 GGTACTTGG-CCCTTATATTGGCCCCCTA-TCCCTCATCAAACCTC-GAGAA-CT-CAC-ACCCC
* *** * * * ****** * * ** ****
11016040 TTTTGGGTTCTGACGATTGGGAGGGTCGGGGGGGTGTGC-GCACATGATGTGGGATGGGTGTTGG
619 CTTAAAG---AG-C-ATT-TGA-GATTTTACAGGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-G
* * ** **
11016104 TACTTGGCCCTTATATTG-GCCCCCTACCCCTCATCAAACCTCGAGAACTCACACCCCGTTAAAA
671 T-C-T-G-----A-AATGAG--CAC-A-CTTTTTTCAAA--T-G-G---T--CA---C----AAA
* * * ** * * * * *
11016168 AGCATT-TGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG-GAATGGGGACTCTT
707 A-TATTGT-ACA-CTTGGA-GTTT--T-----TAGC--TGAATGTTTTTGTGCAT---G-C-C--
** *** * ** * * ****** * *
11016231 TTTCAAATGGTCACAA-AATCTTGTAC-ACTTCGA-GTTTTTAGTTGACTTTTTTTGTGCATGCC
752 --AAAAAAAAT-ACAAGGATCACGT-CTAC--C-ACG--TTT-G-GGGC--CAAAACT-CCTTCC
* ** ** ***
11016293 -AACAAAAATACAAGGATACGTCTACC-AAGTTTGGGGCCA-AAACTCCTTTCGAAAAAATTTTA
803 GAA-AAAATTTTAA--A-AAATC--CCGAA--------CCATAAA-AAGTTTC------------
*
11016355 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAGTTAGAAAACGAGTCGTCCTGCCATG
841 AAAAA--TC--A---T-----G-----AAAA--AT--A-----GAAAACGAGTCGTCTTGCCATG
*
11016420 AAACTTCACGGGAAGGC
880 AAACTTCACGTGAAGGC
* * *
11016437 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCA-AAGATATGAAGA
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAA-ATATGAAGA
* * **
11016501 TGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCACTGGCCGGTG
65 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * * * *
11016566 TAGTGCCCGCCCGT----CTGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAAT
130 TAGTGCCCCCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * ** * * ** ** *
11016627 CTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGGATCGATAGCACACAGAGGGGGACCCAG-C
195 CTAAGATCAGACC-GGCCAAGGGTTACGACAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTC
* * * * * * *
11016691 TGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGATGAGCGCCCGTACGCTCGTTTTGTGGGT
259 -GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGT
* *
11016756 TGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGCATACGGTA-TTCATTCCCAGTCTAGGATC
323 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATC
* * * * *
11016820 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGTTGTCGCATTTTTCT
387 AGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
* * * * * * *
11016885 TCGTCGGGGCACTAT---C--G----TCGGAAAACTTGAACGGCGGCATTGGGGTTCCGGCGATC
452 TCATCGGGGCACCATCGCCGAGCATCTCGGAGAACCTGACCGGCGACATTGGGGTTCCGGTGATC
* *
11016941 GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
517 GGGGGGGTCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * * * * *
11017006 CCCCTATCACTCATCAAACCTCAAGAACTCACACCCTCGTGAAGAGAATTTGAGATTTTATAGGT
582 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * * *
11017071 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGCTCACAAAATCTT
647 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGCACACTTTTTTCAAATGGTCACAAAATATT
* * * * *
11017136 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTG-ATGCCAACAAAAATACAAGTATCATGTCT
712 GTACACTTGGAGTTTTTAGCTGAATGTTTTTG-TGCATGCCAAAAAAAATACAAGGATCACGTCT
* * * *
11017200 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTCAGAACCACAAAAAGTTTC
776 ACCACGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTC
* * * * * * *
11017265 CAAAATCGTGAAAAATAGAAAGCGAGTCATCTTCCCATAAAACTTCAGGTGAAGGC
841 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* ** *
11017321 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAATAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGAT
** * * * *
11017386 GTAACTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCTGACAT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * *
11017451 AGTGCCCGCCAGCTCATCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCC
131 AGTGCCC-CC--C-CGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * ** * * *
11017516 AGTCTAAGATTAGACCGGATCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAAAGGGGGACCCG
192 AGTCTAAGATCAGACCGG-CCAAGGGTTACGACAGCAGGATCGGCAGCACGTAGAGGGGGACCCG
** * * * * * * *
11017581 ACCAATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGG
256 GTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGG
*
11017646 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
321 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * * * * *
11017711 CAGACTGGACCAAGGGTTGCAGCAGCACATACCGGGCTCAGGCATGTACTGGTGCCGCATTTTTC
386 CAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
* * * * * * * ***
11017776 TTCGTCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGACA
451 TTCATCGGGGCACCATCG-CCGAGCATC-TCGGAGAACCTGACCGGCGACATTGGGGTTCCGGTG
* * * * ** *
11017841 ATCGAGGGGGCCGGGGGGTGTGCACACATGATGTGTGATGGGTGCAAGTACTTGGCCTTTATATT
514 ATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATT
*
11017906 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
579 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
** * * * * *
11017971 GGTTTGCTGCCAGTAGCTGTTAAAGTGTTTGAAATGTGGACACTTTTTTCAAATGATCACAAAAC
644 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGCACACTTTTTTCAAATGGTCACAAAAT
* ** * *
11018036 CTTGTACACTTCAAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
709 ATTGTACACTTGGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
* * * *
11018101 CTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAGCCATAAAAAGTT
774 CTACCACGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTT
** *
11018166 TCAAAAATTGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
839 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * * * *
11018224 CTACGGGACCATTGAATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGAT
* * * * *
11018289 GTGCCTAAACCCACATACCACCTTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCGGCGT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * * *
11018354 AGTGCCGCCCC--CCGTCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTT
131 AGTGCCCCCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * ** * * * ** **
11018417 TAAGATCGGACAGACTGAA-GGTTAAGGTAGCAGGACCGGTAGCACGCAGAGAAGGACCCGACCG
196 TAAGATCAGACCGGC-CAAGGGTTACGACAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCG
* * * * * * *
11018481 ATCCCTGGCTTGTGCATCCCGCCCCTCTAGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTG
260 ATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
* * *
11018546 ACTTAGGCATACGGAGTACTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
325 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
11018611 CCAGTCCGAGGGTTGCGGCAGCACACGCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCA
390 CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCA
* * * * *
11018676 TCAGGGCACCATCGCCAGAGCATCATCAGAGAACCTGACCCGC-AGCATTGGGGTTACGGCGATC
455 TCGGGGCACCATCGCC-GAGCATC-TCGGAGAACCTGACCGGCGA-CATTGGGGTTCCGGTGATC
*
11018740 GGGGGGGTCGGGGGGTGTGCGCACATGATATGCA-ATGGGTGCTGGTACTTGGCCCTTATATTGG
517 GGGGGGGTCGGGGGGTGTGCGCACATGATGTG-AGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
11018804 TCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGG
581 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
11018869 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCT
646 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGCACACTTTTTTCAAATGGTCACAAAATAT
* * *
11018934 TGTACACTTTGATTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
711 TGTACACTTGGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * * * * * *
11018998 ACCAAGTTTGGGGCCAAAACTCCATCCTAAAAAATTTTAAAAAATCCCAAACCGTAAAACGTTTT
776 ACCACGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTC
* *
11019063 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGC
841 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* **
11019119 TTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGTAGAAATATGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGAT
* *
11019184 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
** * * *
11019249 AGTGCCCGACCGCCCGCCCGCTCATGTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
131 AGTGCCCCCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * ** * * ** * * * ***
11019314 TAA-ATCGGACTGGATCGAGGGTTGTGACAGCAGGATCAGTAGCACACAAAGGAGAACCCAACCG
196 TAAGATCAGACCGG-CCAAGGGTTACGACAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCG
** * * * * * *
11019378 ATCCCCGGCTTGCTAATCCCGCCCCTCTAGCCGGCTGAGCGCCCGTACACTCGTTTCGTGTGTTG
260 ATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
11019443 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
325 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
11019476 ATCACTGCTG
Statistics
Matches: 4464, Mismatches: 1002, Indels: 846
0.71 0.16 0.13
Matches are distributed among these distances:
878 6 0.00
879 3 0.00
880 4 0.00
881 13 0.00
882 13 0.00
883 19 0.00
884 157 0.04
885 4 0.00
886 11 0.00
887 7 0.00
888 6 0.00
889 4 0.00
890 6 0.00
891 138 0.03
892 466 0.10
893 95 0.02
894 390 0.09
895 366 0.08
896 470 0.11
897 227 0.05
898 5 0.00
899 1 0.00
900 2 0.00
901 5 0.00
902 424 0.09
903 527 0.12
904 50 0.01
905 1 0.00
907 5 0.00
908 2 0.00
909 4 0.00
910 4 0.00
912 6 0.00
913 16 0.00
914 6 0.00
915 11 0.00
916 16 0.00
920 4 0.00
921 3 0.00
922 8 0.00
923 3 0.00
925 5 0.00
926 16 0.00
927 46 0.01
928 13 0.00
929 14 0.00
930 15 0.00
931 25 0.01
932 9 0.00
933 23 0.01
934 37 0.01
935 74 0.02
936 17 0.00
937 11 0.00
938 2 0.00
939 16 0.00
940 13 0.00
941 8 0.00
942 9 0.00
943 15 0.00
944 9 0.00
945 1 0.00
946 1 0.00
947 5 0.00
948 2 0.00
949 2 0.00
950 1 0.00
951 8 0.00
952 3 0.00
953 5 0.00
958 1 0.00
959 1 0.00
960 5 0.00
961 3 0.00
962 4 0.00
963 6 0.00
966 1 0.00
967 1 0.00
968 4 0.00
969 1 0.00
970 2 0.00
972 2 0.00
973 1 0.00
976 1 0.00
977 1 0.00
979 8 0.00
980 1 0.00
981 1 0.00
982 3 0.00
983 2 0.00
986 2 0.00
987 2 0.00
988 2 0.00
989 2 0.00
990 1 0.00
991 2 0.00
992 1 0.00
993 4 0.00
994 1 0.00
995 1 0.00
996 12 0.00
997 4 0.00
998 3 0.00
1000 3 0.00
1001 5 0.00
1003 4 0.00
1004 10 0.00
1005 30 0.01
1006 13 0.00
1007 10 0.00
1008 3 0.00
1009 3 0.00
1010 10 0.00
1011 14 0.00
1012 22 0.00
1013 4 0.00
1014 17 0.00
1015 19 0.00
1016 39 0.01
1017 14 0.00
1018 12 0.00
1019 9 0.00
1020 17 0.00
1021 10 0.00
1022 9 0.00
1023 16 0.00
1024 48 0.01
1025 28 0.01
1026 10 0.00
1027 5 0.00
1029 1 0.00
1030 19 0.00
1031 12 0.00
1034 9 0.00
1035 29 0.01
1036 30 0.01
1037 12 0.00
1038 20 0.00
1039 15 0.00
1040 8 0.00
1041 14 0.00
1042 15 0.00
1043 14 0.00
1044 25 0.01
1045 5 0.00
1046 1 0.00
1047 6 0.00
1048 2 0.00
1049 1 0.00
1050 3 0.00
1051 1 0.00
1052 1 0.00
1053 3 0.00
1054 1 0.00
1056 2 0.00
1057 5 0.00
1058 3 0.00
1059 3 0.00
1060 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
AGTGCCCCCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCGGCCAAGGGTTACGACAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGA
TCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCAT
CGGGGCACCATCGCCGAGCATCTCGGAGAACCTGACCGGCGACATTGGGGTTCCGGTGATCGGGG
GGGTCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGAGCACACTTTTTTCAAATGGTCACAAAATATTGTAC
ACTTGGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAC
GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
Found at i:11014849 original size:26 final size:26
Alignment explanation
Indices: 11014813--11014865 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11014803 GTTGACTTAG
11014813 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
11014839 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11014865 G
1 G
11014866 ATCGGTCTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11015302 original size:196 final size:194
Alignment explanation
Indices: 11014981--11015349 Score: 544
Period size: 196 Copynumber: 1.9 Consensus size: 194
11014971 CTGACTGGAA
** * * * *
11014981 GCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGTGTGTGCACATGATGTGCGATGGGTGATGG
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGCAATGGGTGATGG
11015046 TACTTGGCCCTTATATTGGCCCCCTAATCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
66 TACTTGGCCCTTATATTGGCCCCCTAATCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
11015111 GCATTT-GAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAGAACCTGATCGACG
131 GC-TTTCGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAGAACCTGATCGACG
* * *
11015175 GCATTGGGGTTCTGACGATCGGGGGGGCCAGGGGTGGTATGCGCTCATGATGTGCAATGGGTGCT
1 GCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTATGCGCACATGATGTGCAATGGGTGAT
* * * *
11015240 GGTACTTGGCCCTTATATTGGCTCCCT-CTCCCTCATCAAACCTTGAGAACTCACAGCCCCTTAA
64 GGTACTTGGCCCTTATATTGGCCCCCTAAT-CCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
11015304 AGAGCTTTCGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGT
128 AGAGCTTTCGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGT
11015350 GTTTGGAATG
Statistics
Matches: 155, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
194 25 0.16
195 8 0.05
196 122 0.79
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (194 bp):
GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTATGCGCACATGATGTGCAATGGGTGATGG
TACTTGGCCCTTATATTGGCCCCCTAATCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCTTTCGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAGAACCTGATCGACG
Found at i:11016793 original size:26 final size:26
Alignment explanation
Indices: 11016764--11016814 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11016754 GTTGACTTAG
*
11016764 GCATACGG-AGTTCTTTCCCAGTCTAA
1 GCATACGGTA-TTCATTCCCAGTCTAA
11016790 GCATACGGTATTCATTCCCAGTCTA
1 GCATACGGTATTCATTCCCAGTCTA
11016815 GGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGTATTCATTCCCAGTCTAA
Found at i:11017686 original size:26 final size:26
Alignment explanation
Indices: 11017656--11017708 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11017646 GTTGACTTAG
11017656 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11017682 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11017708 G
1 G
11017709 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11018588 original size:26 final size:26
Alignment explanation
Indices: 11018552--11018604 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11018542 GTTGACTTAG
*
11018552 GCATACGGAGTACTTTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
*
11018578 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
11018604 G
1 G
11018605 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:11018857 original size:896 final size:894
Alignment explanation
Indices: 11015160--11019475 Score: 5407
Period size: 903 Copynumber: 4.9 Consensus size: 894
11015150 AAGTATCTGA
* * * * *
11015160 AGAACCTGATCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCAGGGGTGGTATGCGCTCATGA
1 AGAACCTGACCG-CGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGG-GGTGTGCGCACATGA
* * * *
11015225 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTCTCCCTCATCAAACCTTGAGAAC
63 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
11015290 TCACAGCCCCTTAAAGAGC-TTTCGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTTT
128 TCACACCCCCTTAAAGAGCATTT-GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * ** *
11015354 GGAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTC-AAATTTTAGCTGAATGT
192 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
11015418 TTTTATGCATGCCAACAAAAATACAAGGATCACGTATACCATGTTTGGGGCCAAAACTCCTTCCG
257 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
11015483 AAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTT
322 AAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
11015548 GTCTTGCCATGAAACTTCACGTGG-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
387 GTCTTGCCATGAAACTTCACG-GGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
11015612 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACAG
451 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGG
* * * * * * * *
11015677 CTTACACATCCCGTCTCTCTGGCAGGCGTAGTGCCCACCCGTCCGCCCGCTCGTTTCGTCGGTTC
516 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGCCCGCTCGTTTCATCAGTTG
* * * * ** *
11015742 GCTTAGGCATACAAAGTTAATT-CCAGTCTAATATCAGACTGGATCGAGGGTTGCT-GCAGTAGG
580 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTG-TGGCAGCAGG
* * * ** ** * * * * * * *
11015805 ATCGGTAACACGCAGAGG-GTGACTTGACTAATCCTCGATTTACGTATCCCACCCCTCTGGCTGG
644 ATCGGTAGCACACAAAGGAG-GACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGG
* * ** *
11015869 CTGAGTGCCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATATGGAGTTCATTCCCAG--T---C
708 TTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
**
11015929 -TAC---G---A-T--CA----AA-AT--G----GACCGAGGGTTGCGGCAGCACATGCTACGCT
773 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* ** * *
11015973 CGGGCATGTGTTGGTGCCTTATTTTTCTTC-ACTGGGGCACCCATCGTC--G------G
838 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-AGGGCA-CCATCGTCGAGCATCCAG
* * * * * * * *
11016023 AGAACCTGCCCGACGGCTTTTGGGTTCTGACGATTGGGAGGGTCGGGGGGGTGTGCGCACATGAT
1 AGAACCTGACCG-CGGCATTGGGGTTCCGGCGATCGGG-GGGGCCGGGGGGTGTGCGCACATGAT
* * *
11016088 GTGGGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACT
64 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
11016153 CACACCCCGTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGG
129 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
11016218 AATGGGGACTC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGACTTTTT
194 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
11016282 TTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
259 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* **
11016346 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAGTTAGAAAACGAGTCGT
324 AAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
11016411 CCTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
389 CTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
11016476 GCATTGGCAGGCA-AAGATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCT
454 GCATTGGCATGCAGAA-ATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCT
* * * * *
11016540 TGCGCATCCCGTCTCACTGGCCGGTGTAGTGCCCG---CCCGTCTGCTCGTTTCATCGGTTGGCT
518 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCTCGTTTCATCAGTTGGCT
* * *
11016602 TAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGGATCG
583 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGTGGCAGCAGGATCG
* * * * * * *
11016667 ATAGCACACAGAGGGGGACCC-AGCTGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGATGA
648 GTAGCACACAAAGGAGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGGTTGA
* ** *
11016731 GCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGCATAC
712 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* *
11016796 GGTA-TTCATTCCCAGTCTAGGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
777 GG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * *
11016860 GCATGTGCTGTTGTCGCATTTTTCTTCGTCGGGGCACTATCGTCG-G-----A-
841 GCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGAGCATCCAG
* *
11016907 A-AACTTGAACGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
1 AGAACCTG-ACCGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
11016971 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTC
65 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
11017036 ACACCCTCGTGAAGAGAATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
130 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
11017101 ATGGGGACACTTTTTTCGAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
195 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
11017166 TGTTG-ATGCCAACAAAAATACAAGTATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
260 TG-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
11017230 AAAATTTTAAAAAAT-TCAGAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAGCGAGTCA
324 AAAATTTTAAAAAATCTC-GAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
11017294 TCTTCCCATAAAACTTCA-GGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
388 TCTTGCCATGAAACTTCACGG-GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** * **
11017358 TGGCATTGGCACATAGAAATATGAATATGTAACTAAACCCA-ACTACCACCCTATCGATCCACGG
452 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACA-TACCACCCTATCGATCCACGG
* * * * **
11017422 CTTGCGCATCCCGTCTTTCTGGCTGACATAGTGCCCGCCAGCTCATCCGCCCGCTCGTTTTGTCA
516 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC--C-C--CCGCCCGCTCGTTTCATCA
* ** * * *
11017487 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGCGGTAGC
576 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGTGGCAGC
* * * * * * *
11017552 AGGATTGGCAGCACGCAAAGGGGGACCCGACCAATCCCCGACTTGCGCATCTCGCCCCTCTGGCC
641 AGGATCGGTAGCACACAAAGGAGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCC
11017617 GGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
706 GGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
11017682 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAGCAGCACATACCGGG
771 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
11017747 CTCAGGCATGTACTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCGG
836 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTC-GAGCAT--CCAG
* * * * *
11017809 AGAACCTGACTGACGGCATTGGGGTTCCGACAATCGAGGGGGCCGGGGGGTGTGCACACATGATG
1 AGAACCTGACCG-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* ** * *
11017874 TGTGATGGGTGCAAGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
65 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** *
11017939 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTGTTAAAGTGTTTGAA
130 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * * *
11018004 ATGTGGACACTTTTTTCAAATGATCACAAAACCTTGTACACTTCAAGTTTTTAGCTAAATGTTTT
195 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
11018069 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
260 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** *
11018134 AAATTTTAAAAAATCTCGAGCCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAAGGAGTCGTC
325 AAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * * *
11018199 TTGCCATGAAACTTCACGTGAAGGCCTACGGGACCATTGAATGAATTTACAAGTCATAAAAATGG
390 TTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
11018264 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCTTATCGATCCACGGCTTA
455 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTG
* *
11018329 CGCATCCCGTCTCTCTGGTCGGCGTAGTG-CCGCCCCCCGTCCGCTCGTTTCATCAGTTGGCTTA
520 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCTCGTTTCATCAGTTGGCTTA
* * ** * *
11018393 GGCATACAGAGTTCATTCCCAGTTTAAGATCGGA-CAGA-CTGAAGGTTAAGGTAGCAGGACCGG
585 GGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTGTGGCAGCAGGATCGG
* * * * * *
11018456 TAGCACGCAGAGAAGGACCCGACCGATCCCTGGCTTGTGCATCCCGCCCCTCTAGCCGGTTGAGC
649 TAGCACACAAAGGAGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGGTTGAGC
* *
11018521 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACTTTCCCAGTCTAAGCATACGG
714 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
11018586 AGTTCATTCCCAGTCTAAGATCGGACCAGTCCGAGGGTTGCGGCAGCACACGCTGGGCTCGGGCA
779 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
11018651 TTTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCAGAGCATCATCAG
844 TGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTC-GAGCATC--CAG
* * * *
11018705 AGAACCTGACCCGCAGCATTGGGGTTACGGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATA
1 AGAACCTGA-CCGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
11018770 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTC
65 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
11018835 ACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
130 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
11018900 ATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAA-TTTTT
195 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
11018964 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCTAAA
260 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * **
11019029 AAATTTTAAAAAATCCCAAACCGTAAAACGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
325 AAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
11019094 TTGCCATGAAACTTCACGGGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGG
390 TTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
11019159 CATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
455 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTG
* * * * * *
11019224 CGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCCGCCCGCTCATGTCGTCGGTTGGCTT
520 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCCCCCGCCCGCTCGTTTCATCAGTTGGCTT
* ** * *
11019289 AGGCATACGGAGTTCATTCCCAGTCTAA-ATCGGACTGGATCGAGGGTTGTGACAGCAGGATCAG
584 AGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGTGGCAGCAGGATCGG
* * * ** *
11019353 TAGCACACAAAGGAGAACCCAACCGATCCCCGGCTTGCTAATCCCGCCCCTCTAGCCGGCTGAGC
649 TAGCACACAAAGGAGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGGTTGAGC
* * * *
11019418 GCCCGTACACTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
714 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
11019476 ATCACTGCTG
Statistics
Matches: 2991, Mismatches: 381, Indels: 128
0.85 0.11 0.04
Matches are distributed among these distances:
857 41 0.01
858 131 0.04
859 1 0.00
860 5 0.00
861 272 0.09
862 177 0.06
863 41 0.01
864 7 0.00
870 1 0.00
871 1 0.00
873 2 0.00
877 1 0.00
878 2 0.00
880 1 0.00
882 150 0.05
883 109 0.04
884 293 0.10
885 3 0.00
890 1 0.00
891 1 0.00
892 282 0.09
893 2 0.00
894 2 0.00
895 268 0.09
896 471 0.16
897 233 0.08
898 1 0.00
899 1 0.00
900 1 0.00
902 11 0.00
903 475 0.16
904 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
AGAACCTGACCGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
AATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCCGCTCGTTTCATCAGTTGGCTTAG
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGTGGCAGCAGGATCGGTA
GCACACAAAGGAGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGGTTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGAGCATCCAG
Found at i:11024677 original size:26 final size:26
Alignment explanation
Indices: 11024641--11024693 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11024631 GTTGACTTAG
11024641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11024667 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11024693 G
1 G
11024694 ACCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11025569 original size:26 final size:26
Alignment explanation
Indices: 11025539--11025591 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11025529 GTTAACTTAG
*
11025539 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
**
11025565 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
11025591 G
1 G
11025592 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:11026146 original size:26 final size:26
Alignment explanation
Indices: 11026108--11026160 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11026098 CCGGTCCGAT
* * *
11026108 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTAGGAATAAACTCCATATG
11026134 CTTAGACTAGGAATAAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
11026160 C
1 C
11026161 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:11028776 original size:26 final size:26
Alignment explanation
Indices: 11028747--11028800 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
11028737 GGTCCGATCA
*
11028747 TAGACTGGGATTGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
11028773 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
11028799 TA
1 TA
11028801 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:11029669 original size:26 final size:26
Alignment explanation
Indices: 11029633--11029685 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11029623 CGGGTCTGAT
11029633 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
11029659 CTTAGACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
11029685 C
1 C
11029686 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:11030556 original size:26 final size:26
Alignment explanation
Indices: 11030527--11030579 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11030517 CCGGTCCGAT
*
11030527 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
11030553 CTTAGGCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11030579 C
1 C
11030580 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11031986 original size:892 final size:891
Alignment explanation
Indices: 11026506--11040786 Score: 17396
Period size: 888 Copynumber: 16.0 Consensus size: 891
11026496 GCCTTCACGC
* ** * * *
11026506 TTTCTACTTTTCACGATTTACGAAACGTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * * * *
11026571 ATTTTTGGGCCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCGC-AAAACATTTA
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
11026635 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACGCT
131 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * *
11026700 TCAATGGCTACTGGCAGTAAACCTGTAAAATCTTAAATGCTCTTTAATGGGGTGTGAGTTCTCAA
196 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * * *
11026765 GGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACTAGCACCCATCACACAACATGTAC
261 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * *
11026830 GCACACCCCCACGACCCTCCCGATCACCGGAACCTCAATGTCGCCGGTCAGGTTCTCCGGCGATG
326 GCACACCCCC-CGGCCC-CCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCT-C--C---G
* * * *
11026895 CTCTTGCGATGGTGCCTCGACGAAGAAAAATACAGCACCAACACATGCCCGAGCCCAGTATGTGC
383 -----GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGC
* *
11026960 TACTGCAA-CC-C--T-C-G---G----T-G--T--G---G---TCCG-AT-CTTAGACTGGGAA
443 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
11026999 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTTCTCAGTCAGCCAGAGGGGC
508 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC
* * * * * * * * * * *
11027064 GGGATGCGTAAGCCGAGGATCGATCGAGTCCCCCTTTGCATGCTGC-CAATCCTGTTGCTGTAAC
573 GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT-CTCGATCCTGCTACCGCAAC
* * * * * * *
11027128 CCTCAATTCAGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAATGA
637 CCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * **
11027193 ----GCGGGCGGGTGGGTGGACACTACGTCAGCCAGAGAGACGGGATGCGCAAGCTATGGATCGA
702 GCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * **
11027254 TAGGGTAGTCGGTGGGTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGAATT
767 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* *
11027319 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCAT
832 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
11027379 TTTCTATTTTTCACAATTTTTGAAACTTTTTACGTTTCGAGATTTTTTAAAATTTTTTCGAAAGG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
11027444 AGTTTTGGTCCCAAACTT-GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAACTTCA
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
11027508 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACT
131 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
11027573 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTA
196 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
11027638 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGC
261 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
11027703 GCACACCCCCTCGGCCCCCCGATTGCCGGAACCCCAACGCCGTCGGTCAGGTTCTCCGGTGATCT
326 GCACACCCCC-CGGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCA--------GGT--TCT
* * * *
11027768 CCGGCGATGGTGCCCCGACGAAAAAAAATACGGCACCAACACATGCTCGAGCCTAGCATGTGCTG
380 CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
* * *
11027833 CCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATCAACTCCGTGTGCTTAGACTGGGAATG
445 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * *
11027898 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTGTTTAGCCGGCCAGAAGGGCGA
510 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
* * *** * * *
11027963 GATGTGCAAGCCAGGGATTTATCGGGTCCCCCTCTGCGTGCTGTCGATGCTGCTACCGTAACCCT
575 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTACCGCAACCCT
* * * * *
11028028 CAGTCTGGTCTGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCGATGAAATGAACG
640 CAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * * *
11028093 GGCGGGCTGACGGGCGGGCACTACGCCGACTAGAGAGACGGGATGCGCACGCCATGGATCGATAG
705 GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
11028158 AGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCGAATGCCATTTTTATGGCTTGTA
770 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
*
11028223 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGT
835 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * *
11028280 TTTCTATTTTTCATGATTTTTAAAACTTTTTGCTGTTTGAGATTTTTTAAAATTTTTTCGGAAGG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
11028345 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGTCATGCACAAAAAAATTAA
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * * *
11028410 GCTAAAAACTCG-ATTGTACAAGATTTTGTGACCAATTGAAAAAAATGTCCCCATTTTTAGACGC
131 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACAC
* *
11028474 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCA
195 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
11028539 AGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTG
260 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
11028603 CGGACACCCCCCGGCCCCCTCGATCG-TCAGAACCCCAATGGCC-CCGGTCAGGCTCTTCGACGA
325 CGCACACCCCCCGGCCCCC-CGATCGCT-GGAACCCCAAT-GCCGTCGGTCAGGTTCTCCGGCGA
* ** *
11028666 ---TGCCCC-AGCGAAGAAAAATGAGGCACCAACACATGCTTGAGCCCAGCATGTGCTGCCACAA
387 TGGTGCCCCGA-CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * * * *
11028727 CCCTCGATCTGGTCCGATCATAGACTGGGATTGAACTCCGTATGCCTAGACTGGGAATGAACTCT
451 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * *
11028792 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTTCCCAACCGGCCAGAGGGGTGCGATGCG
516 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * * * * *
11028857 CAAGCCGGAGATCGGCCGAGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCACAAGCCTCAATCC
581 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTACCGCAACCCTCAGTCC
* * * * * *
11028922 GGTCTGATCTTAGACTGGGAATGAATTCCATATGCCTAAGCCAACCGACAAAACGAGCGAGTGGA
646 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* *
11028987 CGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
711 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* ** *
11029052 AGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCTAATGCCA-TTTTATGGCTTGTAAATTCA
776 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
11029116 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGT
841 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
11029167 TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * *
11029232 ATTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTTA
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
11029297 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCTATTTTAGACACT
131 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
11029362 TTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGAGAGTTTTCGA
196 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
11029427 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
261 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** * *
11029492 GCACACCCCCCAGCCCCCTCAATCGCAAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA---
326 GCACACCCCCCGGCCCCC-CGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGG
* * * *
11029554 TGCTCCGACGAAGAAAAATG-GGACACCAGCGCATGCCCGAGCCCAGCATGTGCTGCCACAACCC
390 TGCCCCGACGAAGAAAAATGCGG-CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * * **
11029618 TCTGTCGGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTATA
454 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * * *
11029683 TGCCTAAGTCAACCCATGAAATGAGCGTACAGGCGCTCAACCGGCCAGAGAGGCAGGATGCGCAA
519 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * ** **
11029748 GCCAGGGATCGGTCGGGTCCCCCTCTGGGTGCTGC-CGATGCTACTGCCACAACCCTTGGTTTGG
584 GCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT-CTCGATCCTGCTACCGCAACCCTCAGTCCGG
**
11029812 TCTGATCTTAGACTGGGAATGAACTCAATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
648 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * * * *
11029877 GGAGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCATGCCATGGATCGATAGGGTGGTAG
713 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* **
11029942 GTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
778 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
11030007 CAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGT
843 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
11030056 TTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
11030121 ATTTTTGGCCCCAAAGTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
11030186 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTTAAACAC
131 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACAC
* *
11030251 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCA
195 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
11030316 AGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
260 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
11030381 CGCACACCCCGTCGGCCCCCCCGATC-ATCGGAACCCCAATACCGCCGGTCAGGTTCTCCGACGA
325 CGCACACCCC-CCGG-CCCCCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
* ** *
11030445 TGGTGCCCCGATGAAGAAAAATTAGGCACCAACACATGCCCGAGCCCAGCAAGTGCTGCCGCAAC
387 TGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * *
11030510 CCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTAGGAATGAACTCCG
452 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
11030575 TATGCCTAAGTCATCCCATGAAACGAGCGTACGAGTGCTCAGCCGACCAGAGGGGCGGGATGCGC
517 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * *
11030640 AAGCCGGGGATCGG-CTGGGTCCCCCTCTGCGTGC-CATCGATCCTGCTGCCACAACGCTCAGTC
582 AAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTC-TCGATCCTGCTACCGCAACCCTCAGTC
** ** * ** *
11030703 CAATCCAATCATAGACTACGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA--------
645 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * *
11030760 GCGGGCGTGCGGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGG
710 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
11030825 TAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
775 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
11030890 ATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCAGGGCAAGACGACTCGT
840 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
11030942 TTTCAATTTCTCACGATTTTTGAAACTTTTTACGGGTCGGGATGTTTTAAAATTTTTTCGGAAGG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
** *
11031007 AGTTTTCACCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT-A
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
11031071 TGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTCTCACCATTTCAGACAC
131 -GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
11031136 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
195 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
11031201 AGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
260 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * ** * *
11031266 TGCACACCCCCCTGGACCCCCTGATTGCTGAAACCCCAATGTTGTCGGTCAGGTTCTTCGGTGAT
325 CGCACACCCCCC-GG-CCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
*
11031331 GGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGCAACC
388 GGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * **
11031396 CTTGATCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGT
453 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* **
11031460 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGAAGGATGCGCA
518 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * *
11031525 AGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTACT-GATCCTACTGCCGCAACCCTCAGTCCG
583 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT-CTCGATCCTGCTACCGCAACCCTCAGTCCG
** * * * * * *
11031589 GTCCAATCTTAGACTTGGAATGAACTCTGTATGCCTATGCCAACCGACGAAATGAGTGGGCGGAC
647 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * **
11031654 GGGCGGGCGGGCACTATGCCGGCCAGAGAGACGAGATGCTTAAGCCGTGGATCGATAGGGTGGTA
712 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
11031719 GGTGGGTTTCA-GCACATCTTTATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCC
777 GGTGGGTTT-AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
11031783 TACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAAACGACTCGT
841 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
11031834 TTTCTATTTTTCACGATATTCGAAACTTTCTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
11031899 AGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAACAATTCA
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
11031964 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACT
131 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
11032029 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
196 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
11032094 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGT
261 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
11032159 GCACATCCCCCCGGCCCCCTCGATCGTTGGAACCCCAATGTCGTCGGTCAAGTTCTCCGGTGATG
326 GCACA-CCCCCCGGCCCCC-CGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCC---G--G
**
11032224 CTCCGATAATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCTTGAGCCCAGCATGTGC
384 ---CG---ATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGC
* * * *
11032289 TGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTCGACTGGGAA
443 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
11032354 TGAACTCTGTATGCCTAAGTCAACTCATGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGC
508 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC
* * * * * * * *
11032419 GGAATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTTTGCGTGCTGTGGATCTTGCTGCCGTAACC
573 GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTACCGCAACC
* * * *
11032484 CTCACTCCGATCTGATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA-
638 CTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* ** *
11032548 ---GTGGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGAT
703 CGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
11032610 AGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
768 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* *
11032675 TAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
833 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
11032734 TTTCTATTTTTCACGATTTGTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAATG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * *
11032799 AGGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTTA
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
11032864 GCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTCTCCCCATTTCAGACACT
131 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
11032929 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGA
196 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
11032994 GGTTTGATG-GGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
261 GGTTTGATGAGGG-ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** * * * *
11033058 CGCACACCCCCCCGGCCATGCCGATCGTTGGTACCACAATGCCGCCGTCAGGTTCTCTGGTGATG
325 CGCACA-CCCCCCGGCC-CCCCGATCGCTGGAACCCCAAT---GCCGTC-GG---TCAGGT--T-
** * * *
11033123 CTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGTCTGAGCCCAGCTTGTGC
378 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGC
* * ** *
11033188 TGCTGAAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAA
443 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
11033253 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTTGCTCGGTCGGCCAGAGGGGC
508 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC
* * * * * * * * *
11033318 GAGATCCGCAAGCTGGGGATCGGCCGGGTCCCCCT-TCGCATGCTATCAATCCTGCTATCACAAC
573 GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT-GCGTGCTCTCGATCCTGCTACCGCAAC
* * * * * *
11033382 CCTCGGTCCAGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGATGAAACGA
637 CCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* ** * * *
11033447 ----GCGGGCGGGC---C-AGCTTTA-------C-----GTC-GG-T----TAG-AG-GGA-C--
702 GCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
11033481 --GGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTT
767 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
*
11033544 GTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGT
832 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * ** * * *
11033604 TTTCTATTTTTCATGCTTTTCAAAAATTTTTTCGGTTCGTGATTTTTTAAAATTTTTTCGGAAGG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * * *
11033669 A-TTTTGGCCCCAAACCTGGTAGATGTGGTCTTTGTATTTTTTTTGGCATG-ACAAAAAAATTCA
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
11033732 GCTAAAAACTCGAAGTGTACAAGATTTAGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACC
131 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * **
11033797 TCAATGGCTACTGACAGCAAACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAA
196 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
11033862 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGT
261 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC--ATGT
* * * *
11033927 GCACACCCACCCCCCCGTCCCCCCCGATCGTCAGAAACCCCAATGCCG-CTGGTCAGGTTCTCCG
324 GCGCA--CA-CCCCCCG-GCCCCCCGATCG-CTGGAACCCCAATGCCGTC-GGTCAGGTTCTCCG
* * ** * *
11033991 ACGAGGGTGCCCCGACGAAGAAAAATTTGGCGCCAACACATGCTCGAGCCCAGCATGTGCTGCCG
383 GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * *
11034056 TAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCGTAGACTGGGAATGAAC
448 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
11034121 TCCGTATGCCTAAGTCAACCCACG-AACGAGCGTACGGGTGCTCAGCCGACCAGAGGGGTGGAAT
513 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * *
11034185 GCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAATCCTCGG
578 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTACCGCAACCCTCAG
* * ** * ** *
11034250 TCTGATCCAATCATAGACTATGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGC
643 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* ** * * * *
11034315 GGGTGGGCGGGCGGGTGCTATGCCGGCCAAAGAGACGGGATGCGCAAACCGTGGATTGATAGGGT
708 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * **
11034380 GGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGAATTGTAAAT
773 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
11034445 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGTCAACTTC-T
838 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-TCGT
** **
11034499 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAAA
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
11034564 AGGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTA
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
11034629 GCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTCTCCCCATTTTAGACACT
131 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
11034694 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
196 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
11034759 GGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
261 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
11034824 GCACACCCCCCGACCCCCCCGATCGCCGGTACCACAATGCCGTCGGTCAGGTTCTCCGGCGATGG
326 GCACACCCCCCG-GCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGG
* * * *
11034889 TGCCCCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAACATGTGTTGCCGCAACCTT
390 TGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * *
11034954 CGGTCAGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATAAACTCCTTAT
455 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * ** *
11035019 ACCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTAAGCCAGCCAGAGGGGCAAGATGCGCAAA
520 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * ** * *
11035084 CCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCTGGTC
585 CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTACCGCAACCCTCAGTCCGGTC
* * * **
11035149 TGATTTTAGACTGGGAATGAACTTCGTATGCCTAAACCAACTAACGAAACGA----GCGGGCGGG
650 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* *
11035210 TGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGT-GATTCGATAGGGTGGTAGG
715 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA-TCGATAGGGTGGTAGG
**
11035274 TGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
779 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
11035339 AATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
844 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
*
11035387 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* **
11035452 AGGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTT
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
11035517 GCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTCTCCCCATTTCAGACACT
131 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
11035582 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
196 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
11035647 GGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGC
261 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
11035711 GCACACCACCCACCCCGGACCCCCCGATCG-TCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCG
326 G--CA-CA-CC-CCCCGG-CCCCCCGATCGCT-GGAACCCCAATGCCGTC-GGTCAGGTTCT-C-
* *
11035774 ACGATGCTCCTGCGATGGTGGCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGC
381 -C---G-----GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
* ** *
11035839 ATGTGCTGCCGTAACCCTCGGTCCTATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGAC
437 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * **
11035904 TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAACCGATCAG
502 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * * *
11035969 AGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGC-CAATCCTGCTAC
567 AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT-CTCGATCCTGCTAC
* ** * *
11036033 TGCAACCCTCAGTCTTGTCTGATCTTAGA-TCGGCAATGAACTCCGTATGCCTAAGACAACCGAC
631 CGCAACCCTCAGTCCGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
11036097 AAAATGAGCGGTGCGGGCAGGCGGACGGGCA-TACG-CGGCCAGAGAGATGGGTATGCGCAAGCC
695 GAAACGAGCGG-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG-ATGCGCAAGCC
* * *
11036160 ATGGATCGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCATCTTTCTGGCATGCCAAT-CCA-T
758 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCGTGCCAATGCCATT
* ** *
11036222 TGTCCGGCTTGTAGAA-TCATACAA-GGT-CCTTAAGCCTTCACGTGAAGTTTCATGACAAG-CG
822 TTTATGGCTTGTA-AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
11036283 ACTCGTT
886 ACTCG-T
* * * * *
11036290 TTCTACTATTTTTCATAGATTTTTGAAACTTTTTTCAGTTTTGAAGATTTTTTTAAAATTTTTTC
1 TT-T-CTATTTTTCA-CGATTTTTGAAACTTTTTAC-GGTTCG-GGA-TTTTTTAAAATTTTTTC
* * *
11036355 -GAAGGATTTTTGACCCC-AACTTGGTAGATGTGGA-CCTTGGTATTTTTGTTTGGCATGCAC-A
60 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT-GATCCTT-GTATTTTTG-TTGGCATGCACAA
* *
11036416 AAAAATT-AGCT-AAAACTCG-AGTGTAC-AGATTTTGTGGCCATTTG-AAAAAGTCAT-CCCAT
122 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT-GTCCCCAT
* * *
11036475 TTCAGACACTTTAATGGCTACTGGTAGCAAA--TGTTAAATCTCAAATGCTCTTATTACGGGGGT
186 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-T-TTAAGGGGGT
*
11036538 GTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
249 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * *
11036603 CACATCATGTGCGGACAACCCCCTGGCCCCCCCAATCGCTAGAACCCTAATGCCGCCGGTCAGGT
314 CACATCATGTGCGCAC-ACCCCCCGG-CCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGT
* * * *
11036668 TCTCCGATGATGCTCCAGCGATGGTGCCCCGATGACGAAAAATGTGGCACCAACACATGCCCAAG
377 TCTCC------G-----GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAG
* * * *
11036733 CCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCCTAGACTGGGAATGAACTCCGTATGC
431 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
11036798 TTAGACTGGGAATGCACTCCGTATCCCTAAGTCAACCTACGATACGA--GT----GTG-TTAG--
496 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * **
11036854 TGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTAC-CGATCC
561 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT-CTCGATCC
** * * *
11036918 TGCTGTCACAACCCTC-GATCGGGTCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCA
625 TGCTACCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
11036982 ACCGATGAAATGAGTGGACGGGCGAGCGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCA
689 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
11037047 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTTTATGTGCCAATGCC
754 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
*
11037112 ATTTTTCTGG-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
819 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
11037176 CGACTCGT
884 CGACTCGT
* * * * * *
11037184 TTTCTATTTTTCAAGATTTTTAAAAGTTTTTGCGGTTCGAGATTTTTTGAAAATTTTTTTGGAAG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGGAAG
* * * * *
11037249 GAGTCTTGGCCCTAAACTTGGTAGACGTGATCTTTGTATTTTGGTTGGCATGCAGAAAAAAATTC
65 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
11037314 AGCTATAAACTCGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
130 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
11037379 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
195 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
11037444 AGGTTTGAGGAGGGATAAGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
260 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* **
11037509 TGCACACCCCCCCAACCCCCCCGATCG-TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
325 CGCACA-CCCCCC-GGCCCCCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGG-T-T----C--
* ** **
11037573 TGCTCTGGCGATGGTGCCCGGGTGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGT
379 T-C-C-GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGT
* * * *
11037638 GCTGCCACAAACCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGG
441 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * ** * * *
11037703 AATGAACTCCATATGCCTAAGTCAAACCACAAAACAAATGTGCGGGTGCTCGGCCGGCCAAAGAG
506 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * * * * *
11037768 ACGGGATGCGCAAGCCAGGGATCCG-CTGGGTGCCCCTCTACGTGCTGC-CAATCCTGCTACCGC
571 GCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCT-CTCGATCCTGCTACCGC
* * * * *
11037831 AACCTTCAATCTGGTCTGATCTTAGATTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAA
634 AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* ** *
11037896 CGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGGCCGGAGAGACGGGATGCGCAAGCCGTGGAT
699 CGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
11037961 CGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATCA-TTGTGCGTACCAATGCCATTTTTATG
764 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTGCGTGCCAATGCCATTTTTATG
*
11038025 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGT
828 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * * * *
11038089 TTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTCCAGAAGG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
11038154 AG-TTTGTCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGCCATGCACAAAAAAATTCA
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
11038218 GCTAAAAACTGGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTAAGACACT
131 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
11038283 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCTA
196 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
11038348 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
261 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
11038413 GCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGT
326 GCACACCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGT
* * * ** * *
11038478 GCCCTGACGAAGAAAAATGAGGCACCAGCACATGGTCGAGCCTAGCATGTGCTGCCGTAACCCTC
391 GCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * * *
11038543 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACCGAGAATGAACTCTGTATG
456 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
** * * * * *
11038608 CCTAAGTCAACCCATAAAATGAGCGTGCAGGTGCTCAGTCGGCCTGAGGGGTGGGATGCGCAAGC
521 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * * *
11038673 TGAGGATCGATCAGGTCCCCCTCTACGTGCTGTCGATCCTGCTACGGCGACCCTC-GATCCAGTC
586 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTACCGCAACCCTCAG-TCCGGTC
** * *
11038737 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGTCGGGCGGG
650 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* ** * *
11038802 CGGACGGGCACTACATCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGT
715 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
11038867 GGATTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTCTTATGGCTTGTAAATTCATACA
780 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* ** *
11038932 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGGGTCAT
845 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * ** *
11038979 TTTTTATTTTTTATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAATG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-G
* *
11039043 GAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
65 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
11039108 AGCTAAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGACAC
130 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
11039173 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTC-AATGCTCTTTAAGGGGGTGTGAGTTCTCG
195 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
11039237 AGGTTTGATGA-GGATAGGGGGCGCAAATATAAGGACCAAGTACCAGCACCCATCACACATCATG
260 AGGTTTGATGAGGGATAGGGGGC-C-AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
11039301 TGCACACACCCCCCGGCGCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAAGTTCTCCGACGA
323 TGCGCACACCCCCCGGC-CCCCCGATCGCTGGAACCCCAATGCCGTCGGTC-AGGT-T----C--
* * * * * * *
11039366 TGCTCTGGCGATGGTGCCTCAACGAAGACAAATGCGGCACCAGCACATGTCCGAGCCTAGTATGT
379 T-C-C-GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGT
** * * *
11039431 GCCACC-CAAACCCTCAGTCGGGTCCGATCTTAGACGGGGAATGAACTCCGTATGCTTAGACTGG
441 GCTGCCGC-AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * * *
11039495 GAATGAACTTCGTATGCCTAAGTCAACTCACAAAACAAACGTGCGGGCGCTCAGTCGGCCAGATG
505 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
* * * * * * * * *
11039560 GGCGGGATGCGAAAGTCGAGGATCGGTCGGGTCCCTCTCTACGTGCTGTCGATCCTACTATCACA
570 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTACCGCA
* ** *
11039625 ACCCTC-GATCCAGTCTGATCTTAGACTACGTATGAACTCCGTATGCCTAAGCCAACCGACGAAA
635 ACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
11039689 CGA--------------------G-----CG--GG-CAGAGAGACGGGATGCGGAAGCCGTGAAT
699 CGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
11039726 CGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
764 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* *
11039791 CTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTCGT
829 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
11039854 TTTCTATTTGTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG
1 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * * **
11039919 AATTCTGGCCCCAACCTTGGTAGACATGATCCTTGTAATTTTT-TTGGGGTGCACAAAAAAATTC
66 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTC
* *
11039983 GGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACAC
130 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
11040048 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCG
195 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
11040112 AGGTTTGATGAAGGG-TAGGGGTCCAATATAAGTGCCAAGTACCAGCACCCATCACATATCATGT
260 AGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
11040176 GCGCACACCCCCCCGGCCCCCCCGATCG-TCGAAACCTCAATGTCGGCAGTAAGGTTCTCCGGTG
324 GCGCACA-CCCCCCGG-CCCCCCGATCGCT-GGAACCCCAATG-C--C-GT-CGG---TCAGGT-
* * ** * * * *
11040240 ACACTCAGGCGATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAACATG
377 --TCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* * ** *
11040305 TGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAACCAACTCCGTTTGCTTAGACTGG
440 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
11040370 GAAT-AAGCTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAC
505 GAATGAA-CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
* * ** * * * **
11040434 GGACGAGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGC-CAATCTTATTACCG
569 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT-CTCGATCCTGCTACCG
* * ** * *
11040498 TAACCCTCGGTTTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
633 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * * *
11040563 ACAAGTGTGCGGGCGGGCAGCCGGGCACCAC-CCGGCGAGAGAGACGGGATGCGCAAGACGTGGA
698 ACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
11040627 TCGATAAGGTGGTAAGTGGGTTTAGGCACATCTTTATATTTCTGCTTGCCAATGCCATTTTTATG
763 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* *
11040692 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGT
828 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
11040756 TTTTTATTTTTCATGATTTTTAAAACTTTTT
1 TTTCTATTTTTCACGATTTTTGAAACTTTTT
11040787 GAANNNNNNN
Statistics
Matches: 11701, Mismatches: 1375, Indels: 635
0.85 0.10 0.05
Matches are distributed among these distances:
862 133 0.01
863 141 0.01
864 1 0.00
866 14 0.00
868 186 0.02
869 49 0.00
870 188 0.02
871 59 0.01
872 77 0.01
873 286 0.02
874 46 0.00
875 658 0.06
876 36 0.00
877 7 0.00
878 3 0.00
879 2 0.00
880 7 0.00
881 2 0.00
882 9 0.00
883 7 0.00
884 196 0.02
885 280 0.02
886 325 0.03
887 343 0.03
888 1310 0.11
889 272 0.02
890 736 0.06
891 606 0.05
892 819 0.07
893 37 0.00
894 316 0.03
895 502 0.04
896 48 0.00
897 386 0.03
898 5 0.00
899 287 0.02
900 702 0.06
901 416 0.04
902 337 0.03
903 991 0.08
904 509 0.04
905 141 0.01
906 82 0.01
907 59 0.01
908 52 0.00
909 29 0.00
910 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGT
GCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTACCGCAACCCTCAGTCCGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
Found at i:11033671 original size:24 final size:26
Alignment explanation
Indices: 11033626--11033673 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
11033616 ATGCTTTTCA
**
11033626 AAAATTTTTTCGGTTCGTGATTTTTT
1 AAAATTTTTTCGGTAAGTGATTTTTT
11033652 AAAATTTTTTCGG-AAG-GATTTT
1 AAAATTTTTTCGGTAAGTGATTTT
11033674 GGCCCCAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 6 0.30
25 1 0.05
26 13 0.65
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.52
Consensus pattern (26 bp):
AAAATTTTTTCGGTAAGTGATTTTTT
Found at i:11034108 original size:26 final size:26
Alignment explanation
Indices: 11034079--11034129 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11034069 GGTTCGATCT
*
11034079 TAGACTGGGAATGAACTTCGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
11034105 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
11034130 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:11035900 original size:26 final size:26
Alignment explanation
Indices: 11035871--11035923 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11035861 CCTATCCGAT
* *
11035871 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11035897 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11035923 C
1 C
11035924 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11037695 original size:26 final size:26
Alignment explanation
Indices: 11037666--11037718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11037656 CCGGTCCAAT
*
11037666 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11037692 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11037718 C
1 C
11037719 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11038388 original size:903 final size:901
Alignment explanation
Indices: 11033481--11040787 Score: 9114
Period size: 903 Copynumber: 8.2 Consensus size: 901
11033471 TTAGAGGGAC
* *
11033481 GGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
*
11033546 AAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * * * *
11033611 TTTTCATGCTTTTCAAAAATTTTTTCGGTTCGTGATTTTTTAAAATTTTTTCGGAAGGATTTTGG
131 TTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTGG
* * * * *
11033676 CCCCAAACCTGGTAGATGTGGTCTTTGTATTTTTTTTGGCATG-ACAAAAAAATTCAGCTAAAAA
195 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * *
11033740 CTCGAAGTGTACAAGATTTAGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACCTCAATGGC
260 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * **
11033805 TACTGACAGCAAACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGAT
325 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
11033870 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGTGCACACCC
390 GAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC--ATGTGCGCA--C
* *
11033935 ACCCCCCCGTCCCCCCCGATCGTCAGAAACCCCAATGCCG-CTGGTCAGGTTCTCCGACGA----
451 ACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCT
* * *
11033995 ----G--GGTGCCCCGACGAAGAAAAATTTGGCGCCAACACATGCTCGAGCCCAGCATGTGCTGC
514 CGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGC
* * * *
11034054 CGTAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCGTAGACTGGGAATGA
579 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * *
11034119 ACTCCGTATGCCTAAGTCAACCCACG-AACGAGCGTACGGGTGCTCAGCCGACCAGAGGGGTGGA
644 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGG
* * * * * *
11034183 ATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAATCCTC
709 ATGCGCAAGCCGGGGATCGCTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTC
* * ** * ** *
11034248 GGTCTGATCCAATCATAGACTATGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGG
774 GATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* ** ** * * *
11034313 GCGGGTGGGCGGGCGGGTGCTATGCCGGCCAAAGAGACGGGATGCGCAAACCGTGGATTGATA
839 GCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* **
11034376 GGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGAATTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* *
11034441 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGTCAACTTC-TTTTCTA
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-TCGTTTTCTA
* * **
11034505 TTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAAAAGGTTT
130 TTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGA-GTTT
* *
11034570 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAA
193 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
11034635 AACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTCTCCCCATTTTAGACACTTTAATG
258 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
11034700 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
323 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
11034765 ATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-
388 ATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
11034829 CCCCCCGACCCCCCCGATCGCCGGTACCACAATGCCGTCGGTCAGG-T-T----C--T-C-CGGC
453 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCGGC
* * * *
11034884 GATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAACATGTGTTGCCGCA
518 GATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * * *
11034949 ACCTTCGGTCAGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATAAACTC
583 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * **
11035014 CTTATACCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTAAGCCAGCCAGAGGGGCAAGATGC
648 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * ** *
11035079 GCAAACCGGGGATCGGC-CGGGTCCCCCTCTACGTGCTGTCGATCCTACTGTCGCAACCCTCGGT
713 GCAAGCCGGGGATC-GCTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGAT
* * * **
11035143 CTGGTCTGATTTTAGACTGGGAATGAACTTCGTATGCCTAAACCAACTAACGAAACGA----GCG
777 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * *
11035204 GGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGT-GATTCGATA
842 GGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA-TCGATA
*
11035264 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* *
11035329 AAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* *
11035394 TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGGTTTG
131 TTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG-AAGGA-GTTTG
**
11035459 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTTGCTAAAA
194 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
11035524 ACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGG
259 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
11035589 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
324 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
11035654 TGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACC
389 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-C
*
11035718 ACCCACCCCGGACCCCCCGATCGTCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGACGATGCT
451 ACCC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCT
* *
11035782 CCTGCGATGGTGGCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
514 -CGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
* * *
11035847 CCGTAACCCTCGGTCCT-ATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
578 CCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * ** *
11035911 GAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAACCGATCAGAGGGGCA
642 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCG
* * ** * *
11035976 GGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTACTGCAACCC
707 GGATGCGCAAGCCGGGGATCGCTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCC
* * * * *
11036041 TC-AGTCTTGTCTGATCTTAGA-TCGGCAATGAACTCCGTATGCCTAAGACAACCGACAAAATGA
772 TCGA-TCTGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
11036104 GCGGTGCGGGCAGGCGGACGGGCA-TAC-GCGGCCAGAGAGATGGGTATGCGCAAGCCATGGATC
835 GCGG-GCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGG-ATGCGCAAGCCGTGGATC
11036167 GAT-
898 GATA
* * **
11036170 GGGTGGTAGGTGGGTTTAGGCACATCTTCATCTTTCTGGCATGCCAAT-CCA-TTGTCCGGCTTG
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCTTG
*
11036233 TAGAA-TCATACAA-GGT-CCTTAAGCCTTCACGTGAAGTTTCATGACAAG-CGACTCGTTTTCT
65 TA-AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTT-T
* * * * * *
11036294 ACTATTTTTCATAGATTTTTGAAACTTTTTTCAGTTTTGAAGATTTTTTTAAAATTTTTTCGAAG
127 -CTATTTTTCA-CGATTTTTAAAACTTTTTGC-GGTTCG-GGA-TTTTTTAAAATTTTTTCGAAG
* * *
11036359 GATTTTTGACCCC-AACTTGGTAGATGTGGA-CCTTGGTATTTTTGTTTGGCATGCAC-AAAAAA
187 GA-GTTTGGCCCCAAACTTGGTAGACGT-GATCCTT-GTATTTTTG-TTGGCATGCACAAAAAAA
* *
11036421 TT-AGCT-AAAACTCG-AGTGTAC-AGATTTTGTGGCCATTTG-AAAAAGTCAT-CCCATTTCAG
248 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT-GTCCCCATTTCAG
* * *
11036480 ACACTTTAATGGCTACTGGTAGCAAA--TGTTAAATCTCAAATGCTCTTATTACGGGGGTGTGAG
312 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-T-TTAAGGGGGTGTGAG
* *
11036543 TTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
375 TTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
11036608 CATGTGCGGACAACCCCCTGGCCCCCCCAATCG-CTAGAACCCTAATGCCGCCGGTCAGGTTCTC
440 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * *
11036672 CGATGATGCTCCAGCGATGGTGCCCCGATGACGAAAAATGTGGCACCAACACATGCCCAAGCCCA
504 CGACGATGCT-CGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCA
* * *
11036737 GCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAG
568 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
11036802 ACTGGGAATGCACTCCGTATCCCTAAGTCAACCTACGATACGA--GT----GTG-TTAG--TGCC
633 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * *
11036858 AGAGGGGCGGGATGCGCAAGCTGGGGATCGAC-CGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
698 AGAGGGGCGGGATGCGCAAGCCGGGGATCG-CTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT
** * * *
11036922 GTCACAACCCTCGATCGGGTCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
762 ACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * **
11036987 TGAAATGAGTGGACGGGCGAGCGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCG
827 CGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
11037052 TGGATCGATA
892 TGGATCGATA
* * *** *
11037062 GGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTTTATGTGCCAATGCCATTTTTCTGG-TTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
11037126 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
11037191 TTTTCAAGATTTTTAAAAGTTTTTGCGGTTCGAGATTTTTTGAAAATTTTTTTGGAAGGAGTCTT
131 TTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTT-AAAA-TTTTTTCGAAGGAGT-TT
* * * * *
11037256 GGCCCTAAACTTGGTAGACGTGATCTTTGTATTTTGGTTGGCATGCAGAAAAAAATTCAGCTATA
193 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
*
11037321 AACTCGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
258 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
11037386 GCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
323 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
11037451 AGGAGGGATAAGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACAC
388 ATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
**
11037516 CCCCCCAACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGG
453 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC-GG
* ** * *
11037581 CGATGGTGCCCGGGTGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCAC
517 CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * *
11037646 AAACCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACT
582 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * ** * * * *
11037711 CCATATGCCTAAGTCAAACCACAAAACAAATGTGCGGGTGCTCGGCCGGCCAAAGAGACGGGATG
647 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * *
11037776 CGCAAGCCAGGGATCCGCT-GGGTGCCCCTCTACGTGCTGCCAATCCTGCTACCGCAACCTTCAA
712 CGCAAGCCGGGGAT-CGCTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGA
* * *
11037840 TCTGGTCTGATCTTAGATTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGGT
776 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* *
11037905 GGGCGGGCGGGCGGGCACTACATCGGCCGGAGAGACGGGATGCGCAAGCCGTGGATCGATA
841 GGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * *
11037966 GGGTGGTAGGTGGGTTTAGCCACATCTTCATCA-TTGTGCGTACCAATGCCATTTTTATGGCTTG
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
11038030 TAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTTTA
65 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
11038095 TTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTCCAGAAGGAGTTTG
130 TTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTG
* * *
11038160 TCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGCCATGCACAAAAAAATTCAGCTAAAA
194 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * * *
11038225 ACTGGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTAAGACACTTTAATGG
259 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
11038290 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCTAGGTTTGA
324 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
11038355 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
389 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
*
11038419 CCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-------CG
454 CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCGGCG
* * * ** * *
11038473 ATGGTGCCCTGACGAAGAAAAATGAGGCACCAGCACATGGTCGAGCCTAGCATGTGCTGCCGTAA
519 ATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * * *
11038538 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACCGAGAATGAACTCT
584 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
** * * * * *
11038603 GTATGCCTAAGTCAACCCATAAAATGAGCGTGCAGGTGCTCAGTCGGCCTGAGGGGTGGGATGCG
649 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * * * *
11038668 CAAGCTGAGGATCGATCAGGTCCCCCTCTACGTGCTGTCGATCCTGCTACGGCGACCCTCGATCC
714 CAAGCCGGGGATCGCTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGATCT
* ** * *
11038733 AGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGTCGGG
779 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * *
11038798 CGGGCGGACGGGCACTACATCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATA
844 CGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * ** *
11038856 GGGTGGTTGGTGGATTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTCTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* ** * *
11038921 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGGGTCATTTTTTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* ** *
11038986 TTTTTATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAATGGAGTTTTG
131 TTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAA-GGAG-TTTG
* *
11039051 GCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
194 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
11039116 ACTCGAAGTCTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGG
259 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
11039181 CTACTGGTAGCAAACCTGTAAAATCTC-AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
324 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * *
11039245 TGA-GGATAGGGGGCGCAAATATAAGGACCAAGTACCAGCACCCATCACACATCATGTGCACACA
389 TGAGGGATAAGGGGC-C-AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* ** * * *
11039309 -CCCCCCGGCGCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCTG
452 CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC-G
* * * * * * * * **
11039373 GCGATGGTGCCTCAACGAAGACAAATGCGGCACCAGCACATGTCCGAGCCTAGTATGTGCCACC-
516 GCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
11039437 CAAACCCTCAGTCGGGTCCGATCTTAGACGGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
581 C-AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * * *
11039502 CTTCGTATGCCTAAGTCAACTCACAAAACAAACGTGCGGGCGCTCAGTCGGCCAGATGGGCGGGA
645 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * * *
11039567 TGCGAAAGTCGAGGATCGGTCGGGTCCCTCTCTACGTGCTGTCGATCCTACTATCACAACCCTCG
710 TGCGCAAGCCGGGGATCGCTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCG
** ** *
11039632 ATCCAGTCTGATCTTAGACTACGTATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-----
775 ATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* *
11039692 -----------GC--G---------GG-CAGAGAGACGGGATGCGGAAGCCGTGAATCGATA
840 CGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
11039731 GGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* *
11039796 AAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
11039861 TTGTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAATTCTG
131 TTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG-AAGGAGTT-TG
* * ** *
11039926 GCCCCAACCTTGGTAGACATGATCCTTGTAATTTTT-TTGGGGTGCACAAAAAAATTCGGCTAAA
194 GCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
*
11039990 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATG
258 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
11040055 GCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTG
323 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
11040119 ATGAAGGG-T-AGGGGTCCAATATAAGTGCCAAGTACCAGCACCCATCACATATCATGTGCGCAC
388 ATG-AGGGATAAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * * ** **
11040182 ACCCCCCCGGCCCCCCCGATCGTCGAAACCTCAATGTCGGCAGTAAGGTTCTCCGGTGACACTCA
451 ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC-
** ** * * *
11040247 GGCGATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAACATGTGCTGCC
515 GGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCC
* ** *
11040312 GCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAACCAACTCCGTTTGCTTAGACTGGGAAT-AA
580 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * *
11040376 GCTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACCAGACGGACGAG
645 -CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGG
* * * * ** *
11040441 ATGCGCAAGCCGGGGATCGAC-CAGGTCCCCCTCTGCGTGCTGCCAATCTTATTACCGTAACCCT
709 ATGCGCAAGCCGGGGATCG-CTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCT
* * * * * *
11040505 CGGTTTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTG
773 CGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * * *
11040570 TGCGGGCGGGCAGCCGGGCACCAC-CCGGCGAGAGAGACGGGATGCGCAAGACGTGGATCGATA
838 GGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * *
11040633 AGGTGGTAAGTGGGTTTAGGCACATCTTTATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * *
11040698 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTTTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
*
11040763 TTTTCATGATTTTTAAAACTTTTTG
131 TTTTCACGATTTTTAAAACTTTTTG
11040788 AANNNNNNNN
Statistics
Matches: 5588, Mismatches: 661, Indels: 319
0.85 0.10 0.05
Matches are distributed among these distances:
874 47 0.01
875 680 0.12
876 26 0.00
877 2 0.00
885 2 0.00
887 53 0.01
888 432 0.08
889 39 0.01
890 583 0.10
891 540 0.10
892 313 0.06
893 25 0.00
894 56 0.01
895 507 0.09
896 46 0.01
897 209 0.04
898 6 0.00
899 3 0.00
900 195 0.03
901 69 0.01
902 190 0.03
903 899 0.16
904 308 0.06
905 142 0.03
906 82 0.01
907 53 0.01
908 52 0.01
909 29 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAGGAGTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCGGCGAT
GGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
AGCCGGGGATCGCTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGATCTGG
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
GGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
Found at i:11039488 original size:26 final size:26
Alignment explanation
Indices: 11039459--11039511 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11039449 CGGGTCCGAT
11039459 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
* *
11039485 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
11039511 C
1 C
11039512 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:11044836 original size:26 final size:26
Alignment explanation
Indices: 11044798--11044850 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11044788 CTGGTCCAGT
*
11044798 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11044824 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11044850 C
1 C
11044851 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11046590 original size:26 final size:26
Alignment explanation
Indices: 11046561--11046612 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11046551 CGGTCCGATA
11046561 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
11046587 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
11046613 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:11047472 original size:26 final size:25
Alignment explanation
Indices: 11047443--11047494 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
11047433 CCAGTCCGAT
11047443 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
*
11047469 CTTAGATTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
11047494 C
1 C
11047495 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:11047728 original size:883 final size:885
Alignment explanation
Indices: 11045693--11050052 Score: 5150
Period size: 881 Copynumber: 4.9 Consensus size: 885
11045683 GGTCCGATCA
* * * * *
11045693 TAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACAAGCATGCTGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
* * ** * *
11045758 GCCAAAGGGGCGGGATGCGCAAGCCGTGGATCGGCCGGGTACCCCTCTGCGTGCTACCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTG
* * *
11045823 CTGCCGCAACCCTCGTTCCT-GTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAAC
131 CT-CCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** *
11045887 CGACGAAACGAGCGGGTGGCCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
194 CGACGAAACGAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
11045952 CGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTCTTATGG
259 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
11046017 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGAATCATTT
324 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
* * *
11046082 TCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTC-GAAAGGA
389 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGA
* * * *
11046146 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA-TCAA
453 TTTTTGG-CCC--AC----T--ACATGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTC-A
*
11046210 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACT
508 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
11046275 TTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGA
573 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGA
* * * * *
11046340 GGATTGATAAGGGATAGAGGGCCAATATAATGGCTAAGTACCAGCACCCATCGCACATCATGTGT
638 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT
* * *
11046405 GCACA-CACCCCGGCCCCCCCGATCGCC-AGAACCCCAATGCCGTCGGTTAGGTTCTCCGGCGAT
703 GCACACCCCCCCGG-CCCCCCGATCGCCGA-AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGAT
** * ** * *
11046468 GCTCCAACGATGGAGCCCCGGTGAAGCAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTG
766 GCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTG
** * * *
11046533 CTGCCGTAACCCTAGGTCCGGTCCGATATTAGACTGGGAATGAACTCCGTATGCT
831 CTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
11046588 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCACTCAACCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
* *
11046653 GCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGG-ACCCCTCTGCATGCTACCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTG
* * * * *
11046717 CTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACT
131 CT-CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
11046782 GACGAATCAAACGGGCGGGCAGGCACTACGTCGACCAAAGAGACGGGATACGCAAGCCGTGGAT-
195 GACGAAACGAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATC
*
11046846 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCATTGCCATTTTTATGGC
260 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * *
11046911 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTC
325 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
* * * * *
11046976 CTATTTTTCATGATTTTTGCAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCAGATGGATT
390 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATT
*
11047041 TTTGGCCC-C-A-ATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
455 TTTGGCCCACTACATGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCAGCTAAAAACTCG
*
11047103 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
520 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
11047168 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGG
585 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
11047233 GATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCC
650 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCC-CC
* **
11047298 CGGCCCCCTCGATCGCCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCTGGTGATG
714 CGGCCCCC-CGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGATG
* * * * **
11047363 GTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCACAGCATGTGCTACTGCAACCC
778 GTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCC
11047428 TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
843 TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
11047471 TAGATTGGGAATGAACT-CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
** * * * * * * * *
11047535 GCCAGAGGGGCTAGATGCGCAAGCCGGGGATCGGTTGAGTCCCCCTCTGCATACTATCAATTCGG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTG
* * * * **
11047600 CTATCACAACCCTTGGTCTGGTCTGATCCTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACC
131 CT-CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * ** * * * *** *
11047665 GACAAAACGAGCAGGTAGGCGGGCATTACGCCGACCAGAGAGATGGGATAAACAGGCCGTGGATC
195 GACGAAACGAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
11047730 GATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGC
260 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * * *
11047795 TTGTAAATT-AGTTCAATGGTCCCTTAATCCTTAACGTGCAGTTTCATGGCAAGACGACTCATTT
325 TTGTAAATTCA-TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
* * * *
11047859 TCTAATTTTCACGATTTTTGAAACTTGTTACGGATTAGA-ATTTTTTAAAATTTTTTCGGAAGGA
389 TCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGAGATTTTTTAAAATTTTTTCAGAAGGA
** *
11047923 TTTTTCACCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAG
453 TTTTT-GGCCC--AC----T--ACATGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCAG
* *
11047988 CTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTT
509 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
11048053 TAATGGCTACTGGCAACAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
574 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAG
* *
11048118 GTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTG
639 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG
* *
11048183 CACACCCCCCCGGCACCCCCAATCG-CTAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATG
704 CACACCCCCCCGGC-CCCCCGATCGCCGA-AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATG
* * *
11048247 CT-TCGACGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
767 CTCT-GACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTG
11048311 CTGCCACAA-CC-C--T-CA----G-TC-----C-------G-A-TCCG-AT-CT
831 CTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
11048340 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
* * * *
11048405 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATAGGGTCCCCCTTTGCATTCTGCCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTG
* * * *
11048470 CTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACT
131 CT-CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
11048535 GATGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGGTGCGCAAGC
195 GACGAAACGA----GCGGGCGGGC----GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGC
* **
11048600 CGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATATGTGCCAATGCCA
252 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA--TGCCAATGCCA
* * *
11048665 TTTTTGTGGCTTGCAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
315 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** *
11048730 GACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
380 GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * * *
11048795 TAGATGGATTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGTATGCGTAAAA
445 CAGAAGGATTTTTGGC-CC--AC----T--ACATGATCCTTGTATTTTTCTTGGCATGCATAAAA
* * *
11048860 ACATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTTGAAAAAAGTGTCCCCATTT
501 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTT
*
11048925 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGA
565 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGA
* * **
11048990 GTTCTCGAGGTTTGATGAGAGATGGGGGGCCAATATAAGATCCAAGTACCAGCACCCATCGCACA
630 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
11049055 TCATGTGTGCATACCCCCCCGGCCCCCCCGATTGCCGGAACCCCAATACCGTCGGTCAGGTTCTC
695 TCATGTGTGCACACCCCCCCGG-CCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTC
* *
11049120 CGGTGATG--CT-A-AAT-GT-----GAC--------A---G----CAGCACATGCCCGAGCCTA
759 CGGTGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCA
* *
11049160 GCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCT
824 GCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
*
11049222 TAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
* * * * *** * *
11049286 GCCAAAGGGGCGGGATGCACAAGTCGGGGACCGATCGGGTCCCCCTCTATGTGCAATCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTG
* * * * * ** * * *
11049351 CTGCTGTAACCCTCTGTCCGATCCAATCTAAGACTAGGAATGAACTCCGTATGCCTAAACCAACC
131 CT-CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
11049416 GATGAAACGAGTGGGCGGCCGGGCGGGC-CTTACGTCGACCAGAGAGGCAGGATGTGCAAGCCGT
195 GACGAAACGA----GCGGGCGGGCGGGCAC-TACGTCGACCAGAGAGACGGGATGCGCAAGCCGT
* * *
11049480 GGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTC-TACCAATGCCATTTC
255 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCCATTTT
* *
11049544 TATGGGCTTGTAAAATTCATACAATGGTCCGTTAAGCCTTCACATTGAAGTTTCATGGCAAGACG
319 TAT-GGCTTGT-AAATTCATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCATGGCAAGACG
* ** * *
11049609 ACTCATTTTCTA-TTTTCATGATTTTCAAAAACTTTTTATGGTTTG-GAATTTTTTAAAATTTTT
381 ACTCATTTTCTATTTTTCACGATTTT-TGAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTT
* * * * *
11049672 TCGGAAGGAGTTTTCT-CCCCAAACTTTGTAGACATGATCCTTATGTTTTTGTTGGCATGCATAA
444 TCAGAAGGA-TTTT-TGGCCC--AC----T--ACATGATCCTTGTATTTTTCTTGGCATGCATAA
* * *
11049736 AAAAATTCAGCTAAAAACTCCAAGTGTACGAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATT
499 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
11049801 TAAGACACTTTAATGGTTGCTGGCAGCAAACCTGTAAAGTCTCAAATGCTCTTTAAGGGGGTGTG
564 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTG
* *
11049866 AGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
629 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
11049931 ATCA--TGTGCAAACACCCCCCGGCACCCCCAATCGTCGGAACCCCAATG-CGGCTGGTCAGG-T
694 ATCATGTGTGCACAC-CCCCCCGGC-CCCCCGATCGCCGAAACCCCAATGCCGTC-GGTCAGGTT
*
11049992 -T-C-----T--TC-GACGATGGTGCCCCGACGAAGAAAAATGC-AGCACTAGCACATGCCCGAG
756 CTCCGGTGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAG
11050046 CCCAGCA
820 CCCAGCA
11050053 GTGATCTTAG
Statistics
Matches: 2995, Mismatches: 363, Indels: 219
0.84 0.10 0.06
Matches are distributed among these distances:
856 34 0.01
857 2 0.00
858 1 0.00
860 2 0.00
861 1 0.00
863 1 0.00
865 1 0.00
866 2 0.00
868 3 0.00
869 20 0.01
870 162 0.05
871 8 0.00
872 1 0.00
873 2 0.00
874 8 0.00
875 31 0.01
876 44 0.01
877 264 0.09
878 219 0.07
879 11 0.00
880 219 0.07
881 615 0.21
882 93 0.03
883 285 0.10
884 173 0.06
885 8 0.00
886 1 0.00
888 1 0.00
889 1 0.00
890 22 0.01
891 1 0.00
892 3 0.00
893 182 0.06
894 139 0.05
895 199 0.07
896 236 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTG
CTCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTT
TTGGCCCACTACATGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCG
GCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTG
CCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCG
GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
Found at i:11049237 original size:25 final size:26
Alignment explanation
Indices: 11049194--11049245 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
11049184 CCGGTCCGAT
*
11049194 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11049220 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11049245 C
1 C
11049246 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11051827 original size:26 final size:26
Alignment explanation
Indices: 11051798--11051850 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11051788 CCAGTCTGAT
11051798 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11051824 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11051850 C
1 C
11051851 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11052577 original size:901 final size:895
Alignment explanation
Indices: 11050058--11054535 Score: 5118
Period size: 874 Copynumber: 5.1 Consensus size: 895
11050048 CAGCAGTGAT
* * * * *
11050058 CTTAGACTGGGAATGAACTCGGTATGCCTAAGTCAACACACGAAATGAG-TGTACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCT-TGCGGGCGCTCAA
* ** * ** * * * * * *
11050122 CCGGTTAGAGGGGCGGGATTAGCAAGCCGAGGATCGGTTGGGTTCTCCTCTGTGTGCTGCTGATC
65 TCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATC
* ** *
11050187 CTGCTACAACAACCCTCGATCCAGTCCAATTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAA
130 CTGCTGCCGCAACCCTCGATCCAGTCCAATTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** *
11050252 CCGACGACACGAGCGGGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACAGGATGCGCAA
195 CCGACGAAACGAGCGGGC-GG-GGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
11050317 GTCGTGGATCGAT-AGAGTGGTAGGTGGGTTTAGTCACATCTTCATATTTC-TGCATGCCAATGC
258 GCCGTGGATCGATAAG-GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTGCATGCCAATGC
* *
11050380 CATTTTTATGGCTTGTAAATTCATAC-ATGGTCCCTAAAGGCCTTAACGTGAAGTTTCAT-GCAA
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-GCCTTCACGTGAAGTTTCATGGCAA
* * *
11050443 GACGACTCGTTTTCT-CTTTTCATGA-TTTCAAAAC-TTTTACGG-T-GGGTTTTTT--AATTTT
386 GACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTA-GGTTCGGATTTTTTAAAATTTT
*
11050501 T-GGAAGGAGTTTT--CCCCAAACTTGGTA-A-GTGATCCTTGTATTTTT-TTGGCA-GCA-TAA
450 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
11050558 AAAATTCAGCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATTGCTGAAAAAAGTGT-CCCAT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT--TGAAAAAAGTGTCCCCAT
* * *
11050622 TTCAGACAC-TTAATGGC-ACTGGCAACAAACC-GT-AAATCTCAAA-GCT-ATTAA--GGGTGT
578 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
11050679 GAGTTCTC-AAGTTTGATGA-GGATAGGGGACCAATATTATAGGG-CAAGTACCAGCACCCATCG
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA-TA-AGGGCCAAGTACCAGCACCCATCG
* * * *
11050741 CCATATCATGTGTC-CACA-CCCCC-GACCCCCCAATCG-C--CACCCCAATTG-CG-CGGTCAG
706 -CACATCATGTG-CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAA-TGCCGTC-GTCAG
* * * *
11050798 TTTC-CCATGATGCTCTGATGATGGTG-CCC--CGAAGAAAAATACGGCACCAGCACATGCCCGA
767 GTTCTCCACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * *
11050859 GCCCAGCGTGTGCTG-TCGCAACCCTCAGACTGGTCCGATCTTAGACTGGGAATAAACTCCATAT
832 GCCCAGCATGTGCTGCT-GCAACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAACTCCATAT
11050923 G
895 G
* * * * *
11050924 CTTAGACTGGGAAAGTACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAAT
* * * * * ** ** * * *
11050989 CAGCTAGAAGGGTGCGA-ATGCACAAGCCGGGGATCGGTCGAGTCCTTCTCTACGAGCTACCGGT
66 CGGCCAG-AGGG-GCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGAT
* * * * *
11051053 CCTGCTGCCGTAACCTTC-AGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CCTGCTGCCGCAACCCTCGA-TCCAGTCCAAT-TTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
11051117 CAACTGATGAAACGAGCGGAC--GGGTGGGTGGGCACTACGTCGGCCAGAGAGACGAGATGCGTA
192 CAACCGACGAAACGAGCGGGCGGGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
11051180 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-TGCATGCCAATGC
257 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTGCATGCCAATGC
* * *
11051244 CATTTTTATGGCTTGTAAATTCATTCAATGGTCCCGTAGGCCTTCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** *
11051309 ATGACTCCTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGCTCGAGATTTTTTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTA-GGTTCG-GATTTTTTAAAA-TTT
*
11051374 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
449 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * *
11051439 AAACATTTAGCTAAAAACTTGATGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
11051504 TCAAACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
579 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
11051569 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCTGCACCCATCACAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
11051634 ATCATGTGTGCACACCCCCCGGCCCGCTCGATTGTCGGAACCCCAATGCCATCAGTCAGGTTCTC
709 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GTCAGGTTCTC
* * *
11051699 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGTACATGCCTGAGCCCA
773 C-ACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
11051764 GTATGTGCTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATG
837 GCATGTGCTGCTGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCATATG
* *
11051824 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCTTGCGGGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAAT
* *
11051889 CGGCCAGAGGGGCGAGATGCCCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCAATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * * *
11051954 TGCTACCGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGATCCAGTCCAAT-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
11052019 CTGACGAAATGAGCGGGCGGAGGGTGGGCGGGC-CTATGTTAGCCAGAGGAGATGGGATGCGCAA
195 CCGACGAAACGAGCGGGCGG-GGGTGGGCGGGCACTACGTCGGCCAGA-GAGACGGGATGCGCAA
* * * ** * * *
11052083 ACCATGGGATCGATTA-GTGG-AGG-GGGTTTAGTTACATATACATATTTCTTG-TTGCCCAATG
258 GCCGT-GGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTGCATG-CCAATG
* * *
11052144 CCATTTTTATGGCTTGGTTAAATTCATACAATGGTCCCTTAAGCCTTCACCTG-AGTGTCATGGG
321 CCATTTTTATGGCTT-G-TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * ** *
11052208 AAGATGACTCGTTTATCTATTTTTCACGATTTTGGAAACTTTTGT-GGTTCTGATTTTTTAAAAT
384 AAGACGACTCGTTT-TCTATTTTTCATGATTTTTAAAACTTTT-TAGGTTCGGATTTTTTAAAAT
* * *
11052272 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGGTAGACATGATACTTGTATTTTTCTTGGCAT-CA
447 TTTTCGGAAGGAGTTTTGGCCCCAAACTT-GGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-
*
11052336 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCC
510 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * * *
11052401 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATTCTCTTCACGGGGG
575 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
11052466 TGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
640 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
*
11052531 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCCGTCATTCAGG
705 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTC-GTCAGG
*
11052595 TT-TTC-CGA-----CGAT-A--GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
768 TTCTCCACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
11052650 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCCTAGACTGGGAATGAA-TATCGTATG
833 CCCAGCATGTGCTGCTGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACT-CCATATG
* * * *
11052714 CTTAGACTGGGAAAGAACTCTGTATGCCTAAGTCAACCCACAAAACGAG-TGTACGGGCGCTC-A
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCT-TGCGGGCGCTCAA
* * * *
11052777 TCCGGCCAGAGGGGTGAGATGCGCAAGTCGGGGATCAATCGGGTCCCCCTCTGTGTGCTGCTGAT
65 T-CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGAT
* * * *
11052842 CCTACTGTCGCAACCCTCGGTCCAATCCAATTTAGACTTGGGAATCG-ACTCCGTATGGCCTAAG
129 CCTGCTGCCGCAACCCTCGATCCAGTCCAATTTAGAC-TGGGAAT-GAACTCCGTAT-GCCTAAG
*** * * *
11052906 CCAAACCGACG--AC-ATG-GAATGGGCG-GGGCGGGCACTACGCCGGCCAGAGAGACAGGATGC
191 CC-AACCGACGAAACGA-GCGGGCGGGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* *
11052966 TCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC-TCTTCATATTT-TTGCATGCCTA
254 GCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTGCATGCC-A
*
11053029 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGGTCCCTTAAGCCTTCCCGTGAAG-TTCATG
318 ATGCCATTTTTATGGCTTGTAAATTCATACAAT-GGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
11053093 GCAAAGACGACTTGTTTTCTATTTTTCATGA--TTTCAAACTTTTTTAAGGTTTTGGGTTTTTTT
382 GC-AAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAAC-TTTTT-AGG--TTCGGATTTTTT
* * *
11053156 AAATTTTTTAGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT-ATTCCTTGTATTTTTGTTGCC
442 AAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA-TCCTTGTATTTTTGTTGGC
*
11053220 ATGCAC-AAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGACCATTTTGAAAAAAG
506 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT-GACCA-TTTGAAAAAAG
* *
11053284 TGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTA
569 TGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
11053349 ACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGTACCAGCA
634 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
11053414 CCCATCCCACATCATGTGCGCACACCCCCCGGCCCTCCCGATCGTCGGAACCCAAAAGCTGTCGA
699 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCG-
* * *
11053479 TCAGGTTCTCCAGCGATGCTCCGATGATGGTGCCCC-AGTGAAGAAAAATACGGCACCAACACAT
763 TCAGGTTCTCCA-CGATGCTCCGATGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACAT
** *
11053543 GCCCGAGCATAGCATGTGCTGCCGCAACCCTCGGTCCGT----TC-----C-------G-A-T-C
826 GCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCC
11053589 ----G
891 ATATG
* * * * *
11053590 --TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAATGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAAT
* * * * * * * * * ** *
11053653 TGACCAGAGGGGTGGGATACGCAAGTCGAGGATC-AGTCGAGTCGCCCTCTGCATGCTACCGATC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGTGTGCTGCCGATC
* * * * * * * *
11053717 CTACTGCCGTAACCCTCGGTCCAATCTAATATTAGACTGGGAATGAACTCTGTATGCTTAAGCGA
130 CTGCTGCCGCAACCCTCGATCCAGTCCAAT-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
11053782 ACCGACGAAACGAGCGGGC--GGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
194 ACCGACGAAACGAGCGGGCGGGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* *
11053845 CCGTAGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-TACATGCCAATGCCA
259 CCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTGCATGCCAATGCCA
* *
11053909 TTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
11053974 AACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTTTAATTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTA-GGTTC-GGA--TTTTTTAAAATTTT
* * *
11054039 TCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAA
450 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
11054104 AACATTCAGCTAAAAATTTGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
11054169 CAAACACTTTAATGGCTACTGGAAGCAAACCTATAAAATCTCGAATGCTCTTTAAGGGGCTGTGA
580 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
11054234 GTTCTCGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
11054299 TCATGAGCGCACACCACCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGATCAGGTTCT
710 TCATGTGCGCACA-C-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCG-TCAGGTTC-
** * *
11054364 TCGGCGATGCTCCGATGATGGTGCCCCGACGAAGATAAATGCGGCACCAGCACATGCTCGAGCCC
771 TCCACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * * *
11054429 AGCATTTACGGCTGCAACCATTGGTCCGATCCGATCTTGGACTGGGAATGAACTCCGTATG
836 AGCATGTGCTGCTGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
11054490 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
11054536 ATGCAGGCGG
Statistics
Matches: 3083, Mismatches: 370, Indels: 282
0.83 0.10 0.08
Matches are distributed among these distances:
864 138 0.04
865 28 0.01
866 68 0.02
867 66 0.02
868 59 0.02
869 1 0.00
870 1 0.00
871 7 0.00
872 10 0.00
873 64 0.02
874 425 0.14
875 119 0.04
876 155 0.05
877 18 0.01
878 1 0.00
879 17 0.01
880 19 0.01
881 18 0.01
882 50 0.02
883 14 0.00
884 2 0.00
885 17 0.01
886 30 0.01
887 118 0.04
888 92 0.03
889 289 0.09
890 285 0.09
891 33 0.01
892 12 0.00
893 6 0.00
894 9 0.00
895 12 0.00
896 3 0.00
897 21 0.01
898 11 0.00
899 116 0.04
900 272 0.09
901 314 0.10
902 97 0.03
903 65 0.02
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAAT
CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCC
TGCTGCCGCAACCCTCGATCCAGTCCAATTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAGGTTCGGATTTTTTAAAATTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGTCAGGTTCTCCACGATGC
TCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCTGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:11055244 original size:26 final size:26
Alignment explanation
Indices: 11055206--11055258 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11055196 CTGGTTCGAT
*
11055206 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
11055232 CTTAGGCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11055258 C
1 C
11055259 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11059875 original size:26 final size:26
Alignment explanation
Indices: 11059839--11059891 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11059829 TTGGTTCGAT
*
11059839 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
11059865 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
11059891 C
1 C
11059892 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:11060003 original size:12 final size:12
Alignment explanation
Indices: 11059981--11060014 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
11059971 TCACCCTCTA
*
11059981 CATGCTGCCGAT
1 CATGCTACCGAT
*
11059993 CCTGCTACCGAT
1 CATGCTACCGAT
11060005 CATGCTACCG
1 CATGCTACCG
11060015 TAACCCTCGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.18, C:0.38, G:0.21, T:0.24
Consensus pattern (12 bp):
CATGCTACCGAT
Found at i:11060805 original size:26 final size:26
Alignment explanation
Indices: 11060754--11060806 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11060744 CCAGTTCGAT
* *
11060754 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
11060780 CTTAAACTGGGAATGAACTCTATATG
1 CTTAAACTGGGAATGAACTCCATATG
11060806 C
1 C
11060807 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:11061677 original size:26 final size:26
Alignment explanation
Indices: 11061648--11061700 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11061638 CCGGTCCAAT
*
11061648 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
11061674 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
11061700 C
1 C
11061701 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:11063434 original size:26 final size:26
Alignment explanation
Indices: 11063405--11063457 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11063395 CCTATCCGAC
*
11063405 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
11063431 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
11063457 C
1 C
11063458 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:11064225 original size:11 final size:11
Alignment explanation
Indices: 11064209--11064238 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
11064199 TCAGGTTCTC
*
11064209 CGGTGATGCTA
1 CGGTGATGCCA
11064220 CGGTGATGCCA
1 CGGTGATGCCA
11064231 CGGTGATG
1 CGGTGATG
11064239 GTGCCTCGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.20, G:0.40, T:0.23
Consensus pattern (11 bp):
CGGTGATGCCA
Found at i:11064357 original size:26 final size:26
Alignment explanation
Indices: 11064319--11064371 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11064309 CTGATCTGAT
* *
11064319 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
11064345 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11064371 C
1 C
11064372 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11065182 original size:915 final size:907
Alignment explanation
Indices: 11059403--11066176 Score: 8507
Period size: 915 Copynumber: 7.5 Consensus size: 907
11059393 GAACTCCTTA
11059403 TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
11059468 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGGAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
11059533 AGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
**
11059598 TAAGGGGGTGTGAGTTCTTTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
11059663 CACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCTCGATCGTTAGAACCCCAATGCCGT
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGCTAGAACCCCAATGCCGT
* *
11059728 CGGTCAGGTTCTTCGGTGATGCT-C--C---GA-TGATGGTGCCCCGACGAAGAAAGA-GTGGCA
325 CGGTCAGGTTCTCCGGTGATGCTACGGCGATGACTGATGGTGCCCCGACGAAGAAAAATGTGGCA
* * * * * * *
11059785 CCAACACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTTGGTTTGGTTCGATCTTAAACTGGG
390 CCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCT-GATCGATCTTAGACTGGG
** *
11059850 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAGGAAACGAGC
454 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
* ** *
11059915 GTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAACCGGGTCACCCTCT
519 GTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC-GGTCCCCCTCT
* * *
11059980 ACATGCTGCCGATCCTGCTACCGATCATGCTACCGTAACCCTCGGTCTGGTCTGATCTTCGACTG
583 ACATGCT----A-CC-GAT-CC--T-A--CTACCATAACCCTCGGTCTGGTCTGATCTTAGACTG
** * * *
11060045 GGAATGAACTCTATATGCCTAAGCCGACCGATGAAACGAGCGAGCG-GGCGGGCGGGCGGGCACC
636 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-G-GTGGCGGGCGGGCGGGCACT
* *
11060109 ACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
699 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
11060174 ATCTTTATATTTCTACATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAACGGTCCCTTAA
764 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
11060239 GCCTTCACGTGAAGTTTAATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTT
829 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTT
*
11060304 TACAGTTCAGGATT
894 TACGGTTCAGGATT
* * * *
11060318 TTTGAAAATTTTTTTGAAAGAATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
11060383 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * * *
11060448 AGTGTCCCGATTTCAAACACTTTAATGGCTATTGGCAGCAAATCTATAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
11060513 TAAGGGGGTGTGAGTTCTCGAGGTTCGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * * *
11060578 CACGCATCGCACACCATGTGTGCACACCCCCCAGCCCCCCCGATCGCTGGAACCCCAATGCCGCC
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCTAGAACCCCAATGCCGTC
* *
11060643 TGTCAGGTTCTCCGGCGATGCT-C--C---GAC-GATGGTGCCCCGACGAAGAAAAATGTGGCAC
326 GGTCAGGTTCTCCGGTGATGCTACGGCGATGACTGATGGTGCCCCGACGAAGAAAAATGTGGCAC
* * * * * * *
11060701 CAGCACATGCTCGAGCCCAGCATGGGCTACCGCAACCCTTGGTCCAGTTCGATCTTAGACTGGGA
391 CAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGT-CTGATCGATCTTAGACTGGGA
* *
11060766 ATGAACTCCGTATGCTTAAACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCG
455 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * * *
11060831 TAC-GATCGCTCAACCGACCAGAGGGGCGAGATGTGCAAGTCGGGGATTGACCGGGTCCCCCTCT
520 TGCGGGT-GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC-GGTCCCCCTCT
* * * * * * *** * *
11060895 GCGTACTACCGATCTTGCTGCTGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCC
583 ACATGCTACCGATCCTACTACCATAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
*
11060960 GTATGTCTAAGCCAACCGACGAAACGA-------GCGGGCGGGCGGGCACTACGCCGGCCAGAGA
648 GTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
*
11061018 GACGGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
713 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*** *
11061083 ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
778 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * *
11061148 TTTCATTGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTATTTATGATTC-GAGAT
843 TTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GAT
11061212 T
907 T
*
11061213 TTTTAAAATTTTTTAT-GAAGGCA-TTTTGGCCCCAAACTTGGTAGACGTGACCCTTGTATTTTT
1 TTTTAAAATTTTTT-TGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * *
11061276 GTTGGCGTGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
64 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
11061341 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-ATGCAAACTTGTAAAATCTCAAATGTT
129 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA-GCAAACCTGTAAAATCTCAAATGCT
*
11061405 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
193 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
** *
11061470 CAGCACCCATAACACATCATGTGCG--CACCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGC
258 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCTAGAACCCCAATGC
* * ** * *
11061533 TGTCGGTCAGGTTCT-C--TG--GCGA-GGCTCTGAC-AATGGTGCCCCGACGAAGAAAAATGCG
322 CGTCGGTCAGGTTCTCCGGTGATGCTACGGCGATGACTGATGGTGCCCCGACGAAGAAAAATGTG
* * * *
11061591 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACT
387 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGAT-CGATCTTAGACT
* * *
11061656 GGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAATG
451 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACG
* * * * ** * *
11061721 AGCGTACAGGCGTTCAGCCAACCAGAGGAGCGGGATGCGCAAGCCGGGGATTGGCCGAGTCCCCC
516 AGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCG-GTCCCCC
* ** * * * * *
11061786 ACTACATGCTACCGGCCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAAC
580 TCTACATGCTACCGATCCTACTACCATAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* *
11061851 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGATGGTGGGCGGGCGGGCACTACGCCGGCTA
645 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-TGGCGGGCGGGCGGGCACTACGCCGGCCA
* *
11061916 GAGAGACGGGATGCGCAAGCCATGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
709 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
11061981 TTCTGAATGCTAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
774 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
** * *
11062046 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGG
839 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG
11062111 GATT
904 GATT
* * *
11062115 TTTCAAAATCTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-C------TTTT-T
1 TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
11062172 TGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACATGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
11062237 AGTGTCCCCATTTCATACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
11062302 TAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * ** *
11062367 CACCCATCGCACATCATGTGCGCACCCCCCCCACCGGCCCCCCGATCG-TCGGAACCGTAATGCT
261 CACCCATCGCACATCATGTGCGCA-CACCCCC-CCGGCCCCCCGATCGCT-AGAACCCCAATGCC
* ** * * **
11062431 GTCGGTTAGGTTCTCCGACGATGGT-C--C---GA-TGATGCTGCCCCGGTGAAGAAAAATGCT-
323 GTCGGTCAGGTTCTCCGGTGATGCTACGGCGATGACTGATGGTGCCCCGACGAAGAAAAATG-TG
* *
11062488 GCACCAGCACATGCCCAAGCCCAGCATGTGCTG-TCACAACCCTCGGTCTG---G-TC-----C-
387 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCTGATCGATCTTAGACT
*
11062542 ------G-A-T-C-TA-----AGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCATGAAAC
451 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAAC
** * * * * * *
11062591 GAATGTACGGGCGTTCAGCCGGCCAGAGGGGAGGGATGCGCAGGCCGAGGATCGGCCAGGTCCCC
515 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC-GGTCCCC
* * * * ** **
11062656 TTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAA
579 CTCTACATGCTACCGATCCTACTACCATAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
** * * * * *
11062721 CTCTATATGCCTAAGCCAACCAACGAAATGA-------ACAGGCGGGCGGGCACTACGTCGGCCA
644 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGCGGGCGGGCGGGCACTACGCCGGCCA
* * *
11062779 GAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGCCACATCTTCATAT
709 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** * * * *
11062844 TTCTGTGTGCCGATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACCT
774 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
**
11062909 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAG
839 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG
*
11062974 AATT
904 GATT
* * * *
11062978 TGTTAAAATTTTTTTGGAAGGAGCTTTGGCCCCAAACTTGGTAGACATGATCCTTGCATTTTTGT
1 TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
11063043 TGGCATGCA-AAAAAATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATGTGAAGA
66 TGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
11063107 AAGTGTCCCCATTTCAGACGCTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * *
11063172 TTAAGGGGGCGTGAGGTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
** * ** ***
11063237 GCACCCATCATACATCATGTGCGCACA--CCCCCTG---ATCG-TCG---GAACCCCAATGCTAC
260 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCTAGAACCCCAATGCCGT
* * ** * *
11063293 CAGTCAGGTTCTCC---GA--CGA-GGCTCTGAC-GATGGTGCCCCGACAAAGAAAAATGCGGCA
325 CGGTCAGGTTCTCCGGTGATGCTACGGCGATGACTGATGGTGCCCCGACGAAGAAAAATGTGGCA
* *
11063351 CCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCCT-ATCCGACCTTAGACTGG
390 CCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGT-CTGAT-CGATCTTAGACTGG
* *
11063415 GAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
453 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG
* ** * * * *
11063480 CGTGCAGGCACTCAGCCGGCCAGAGGAGCGAGATGCGCAAGCCGAGGATCGACCGAGTCCCCCTC
518 CGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCG-GTCCCCCTC
* * * * * * * * *
11063545 TACGTGCTACTGACCCTGCTGCCGCT-ACCCTCAGTCTGTTCTGATCTTAGATTGGGAATGAACT
582 TACATGCTACCGATCCTACTACC-ATAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * *
11063609 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCTGGTGGGCGGGCGGACACTACGCCGGCTAG
646 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-TGGCGGGCGGGCGGGCACTACGCCGGCCAG
* * * *
11063674 AGAGACGGGATGCACAAGCCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGTACATCTTTATATT
710 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
11063739 TCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTG
775 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* ** * * ****
11063804 AAGTTTCATGGCAAGACGACT-AGTTTTTTATTTTTCACGATTTTCAAAACGTTTTGCGGGGGTG
840 AAGTTTCATGGCAAGACGACTCA-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG
11063868 GATT
904 GATT
* *
11063872 TTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
11063937 TGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATGTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
11064002 AGTTTCCCCATTTCAGACACTTTAATGGCTACTCGCAACAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
11064067 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACTAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
11064132 CACCCATCGCACATCATGTGCACACACCGCCCCGGCCCCCCGATCGCTAGAACCCCAATGCCGCC
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCTAGAACCCCAATGCCGTC
* * * *
11064197 GGTCAGGTTCTCCGGTGATGCTACGGTGATGCCACGGTGATGGTGCCTCGGCGAAGAAAAATGCG
326 GGTCAGGTTCTCCGGTGATGCTACGGCGATG--AC--TGATGGTGCCCCGACGAAGAAAAATGTG
* * ** * *
11064262 GCACCAGCACATGCCCGAGCCCAGCATATTCTGCTGCAACGTTCAGTCTGATCTGATCTTAGATT
387 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGATC-GATCTTAGACT
*
11064327 GGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACG
451 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACG
*** * * * *
11064392 AGCGTGCGGGTGCTCAGTTAGCTAGAGGGGCGGGATGCACAAGCCGGGGATTGGCCAGGTCCCGC
516 AGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC-GGTCCCCC
* * *
11064457 TCTACTTGCTACCGATCCTATTATCATAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
580 TCTACATGCTACCGATCCTACTACCATAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * *
11064522 TCCATATGCCTAAGCCAACCGACGAAACAAGCGGGTGGACGGGCGTGCGGGCACTACGCCGACCA
645 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGG-CGGGCGGGCGGGCACTACGCCGGCCA
* *
11064587 GAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATAT
709 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
11064652 TTCTGCATGCCAATGCCAGTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
774 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* ** * * *
11064717 GAAGTTTAATGGCAAGATAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAA
839 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG
*
11064782 AATT
904 GATT
*
11064786 TTTTAAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
1 TTTTAAAATTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
11064851 TTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
65 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * *
11064916 AAGTTTCCACATTTTAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
11064981 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGGCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
11065046 GCACCCATCGCACATCGTGTGCACACACCCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGT
260 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCTAGAACCCCAATGCCGT
* * *
11065111 CGGTCAGGTTCTCCGGTGATGCTACGGCGATGCCACGGTGATGCTGCCTCGGCGAAGAAAAATGT
325 CGGTCAGGTTCTCCGGTGATGCTACGGCGATG--AC--TGATGGTGCCCCGACGAAGAAAAATGT
* * * * * * *
11065176 GGCACCAGCACATGCCCGATCCCAGTATATGCTGCTGCAACCCTCAGTCTAGTTCAATCATAGAC
386 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCT-GATCGATCTTAGAC
* * * ** *
11065241 TGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCAAAAAAT
450 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
* * * *
11065306 GAGCGTGCGGGTGCTCAACCTGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGCCGGTTCCCC
515 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGG-TCCCC
* ** * * *
11065371 CTCTGCATGCTGTCGATCCTACTACCAAAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAA
579 CTCTACATGCTACCGATCCTACTACCATAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
* * * * * *
11065436 CTCCGTATGCCTAAGCCAACCGACAAAACGAGTGGGCGAGCAGGCGGGCGGGCACTACGTCGGCT
644 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTG-GCGGGCGGGCGGGCACTACGCCGGCC
* * * *
11065501 AGAGAGAC-GGATGCACAAGCCGTGGATCAATAGGG-CGTAGGTGGGTTTAGGCACATCTTTATA
708 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
11065564 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGATCCCTTAAGCCTTCACG
773 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * ** * **
11065629 TGAAGTTTCATGACAAGATGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACTGTTTG
838 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCA
11065694 GGATT
903 GGATT
*
11065699 TTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CTTGTATTTTTGT
1 TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * **
11065763 TGGCATGCACAAAAAAATTCAGCTAAAAAGTTGAAGCATACAAGATTTTGTGACCATTTTGAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAA
* *
11065828 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAGATGCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
11065893 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
11065958 GCACCCATCGTACATCATGTGCGCACACCCCCCCCCGACCCCCTCGATC-ATCAGAACCCCAATG
260 GCACCCATCGCACATCATGTGCGCACA--CCCCCCCGGCCCCC-CGATCGCT-AGAACCCCAATG
* *** *
11066022 CCGTAGGTCAGGTTCTCCAACGATGCT-C--C-A-G--TGATGGTGCCCCGACGAAGAAAAATGC
321 CCGTCGGTCAGGTTCTCCGGTGATGCTACGGCGATGACTGATGGTGCCCCGACGAAGAAAAATGT
* * * *
11066080 GACGCCAGCACATGCCCGATG-CCAGCATGTGCTG-TCGTAACCCTCGGTCTGGTCCGATCTTAG
386 GGCACCAGCACATGCCCGA-GCCCAGCATGTGCTGCT-GCAACCCTCGGTCTGAT-CGATCTTAG
*
11066143 ACTGAGAATGAACTCCGTATGCTTAGACTGGGAA
448 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
11066177 AGGACAATTT
Statistics
Matches: 5132, Mismatches: 585, Indels: 295
0.85 0.10 0.05
Matches are distributed among these distances:
857 3 0.00
860 88 0.02
861 3 0.00
863 253 0.05
864 4 0.00
865 1 0.00
867 3 0.00
868 3 0.00
870 13 0.00
871 368 0.07
872 1 0.00
876 2 0.00
877 2 0.00
878 2 0.00
879 2 0.00
880 2 0.00
881 2 0.00
885 1 0.00
886 172 0.03
887 1 0.00
889 2 0.00
891 2 0.00
892 2 0.00
893 15 0.00
894 964 0.19
895 471 0.09
896 7 0.00
897 109 0.02
898 5 0.00
899 2 0.00
900 5 0.00
901 3 0.00
902 250 0.05
903 94 0.02
904 102 0.02
906 3 0.00
908 3 0.00
909 6 0.00
910 3 0.00
911 68 0.01
912 189 0.04
913 168 0.03
914 596 0.12
915 1133 0.22
916 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (907 bp):
TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCTAGAACCCCAATGCCGTC
GGTCAGGTTCTCCGGTGATGCTACGGCGATGACTGATGGTGCCCCGACGAAGAAAAATGTGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGATCGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGTCCCCCTCTACA
TGCTACCGATCCTACTACCATAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCGACGAAACGAGCGGGTGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATT
Found at i:11065272 original size:26 final size:26
Alignment explanation
Indices: 11065236--11065289 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
11065226 AGTTCAATCA
11065236 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
11065262 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
11065288 TA
1 TA
11065290 TGTCAACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:11067613 original size:26 final size:26
Alignment explanation
Indices: 11067562--11067614 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11067552 CCGGTTCGAT
* **
11067562 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATCAACTCCATATG
*
11067588 CTTAGACTGGGAATCAACTCCATATG
1 CTTAGACTAGGAATCAACTCCATATG
11067614 C
1 C
11067615 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCATATG
Found at i:11068091 original size:892 final size:894
Alignment explanation
Indices: 11066713--11076796 Score: 6305
Period size: 892 Copynumber: 11.3 Consensus size: 894
11066703 CAAATGAAGA
* *
11066713 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGC
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * *
11066778 AAG-TCGGGGATCGACCAGGTCCCCCTCTGCGTGCTATCGATCCTACTGCCACAACCCTAAGTCC
66 AAGCT-GGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCC
* * *
11066842 GATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGG
130 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-A--
* * * * **
11066907 CGGGTGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAAAGTGGTAGGT
191 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * *
11066972 GGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATGGCTTGTAAAAATCGTAC
256 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT-AAATTCATAC
* * * *
11067037 AATGGTCCCTTAAGCCTTAACGTTAAGTTTCATGGCAACAAGACTCGTTTTCTATTTTTCACGAT
320 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * *
11067102 TTTTGAAACTTTTTGCGGTTCGGCATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCTCAAACT
385 TTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
11067167 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
450 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * * *
11067232 TATAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAACGCCTACTGGCAG
515 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
11067297 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-
580 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
11067361 AGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCTGGCCCC
645 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
*
11067426 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGG-TCTCCGGTGATGCTCCGGTGATGGTGCCCCG
710 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCG
* *
11067490 GCGAAGAAAAAT-CTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTATCGCAACCATCGGTCC
775 GCGAAGAAAAATAC-GGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCC
* * * * *
11067554 GGTTCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATCAACTCCA
839 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * **
11067610 TATGCCTAAGTCAAACCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATATGC
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * *
11067675 AAGCTGGGGATCGGCCAGGTCCACCTCTACGTGCTGTCGATCCTGCTGCCGCAACCTTCAGTCCA
66 AAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCG
* * * *
11067740 GTCTGATCTTAGAC-GTGGAATGAACTCCATATGCCTAAGCTAACCGACAAAACGAGCGGACGGG
131 GTCCGATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGG
* * * *
11067804 CGGGCACTACGTCGGTCAGGGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
195 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11067869 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTG
260 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
11067934 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
325 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
** **
11067999 AAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
390 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
11068064 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAA
455 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
11068129 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTGGCAGCAAAC
520 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
11068194 CTGTAAAATCTCAAATGCTCTTTAA-GGGGTAGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGG
585 CTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
11068258 CCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGTG--CACCCCCCAGCCCCCTCG
649 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CG
** * * *
11068321 ATCACCGGAACCCCAATGCCGCCGGTTAGGTTCTCCAGTGATGCTCCGGC-ATGGTGCCCCGGTG
713 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCG
* * *
11068385 AAGAAAAATACGTCACCAGCACATG-CTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTTCAGT
778 AAGAAAAATACGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGT
* *
11068449 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCG
842 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* ** * * *
11068502 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTACCAGAGGGGTGAGACGCGC
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
*
11068567 AAGCTGGGGATTC-AGCCGGGT-CCCC-CT-C-TGC-GT-G---CTGCT---ACAACCCTCAGTC
66 AAGCTGGGGA-TCGA-CCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTC
* * * *
11068619 CAGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGG
129 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------
* * *
11068684 GCGGGCGAGCGGGCGGGAACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGA
186 GC--G-GA-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * * *
11068749 TTGGTAGCTGGGTTTAGGCACATCTTCAAATTTCTACGTGTCAATGCCATTTTTATGGCTTGTAA
247 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * *
11068814 ATTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTGATGGCAAGATGACTCGTTTTCTATTT
312 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
11068879 TTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGG
377 TTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
11068944 CCCAAACTTGGTAGACGTGATTCTTGTATTTTTGTTGGCATGCA-TAAAAAATTCAGCTAAAAAC
442 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
11069008 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
507 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
11069073 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
572 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
11069138 AGGGATAAGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
637 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * *
11069203 CCTCGGCCCCTCCGATCGTTGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCGGCA
701 CC-CGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCG
* * * * * *
11069268 ATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCTGGAA
764 ATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAA
* * * * * *
11069333 CCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGCATGCTTAGGCTGGGAATGAACTCT
829 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
11069398 G
894 G
* * * * * * * *
11069399 TATGCCTAAGTTAACCCACGAAATGAGCATGCGGGCACTGAGCCGACCAGAGGGGCAGGATGCGC
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * *** * * **
11069464 AAGCTGAGGATTGGTTGGGTCCCCCTCTGCGTACTGTCGATCCTGCTGCTGCAACCCTCAGTTTG
66 AAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCG
* * *
11069529 GTCCAATCTTAGACTGGGAATGACCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
131 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGC
* * *
11069594 GGGCAGGCTCTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGGTAGGGTGCTAGGTG
196 GGGCA----CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
11069659 GGTTTAGGCACACCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
257 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * * *
11069724 TGGTCTCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACAACTTGTTTTTTATTTTTCATGATTT
322 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
11069789 TCAAAACTTTATGCGGTTCAGGA-TTTTTAAAATTTTTTTTGGAGGGAGTTTTGGCCCCAAACTT
387 TCAAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * ** *
11069853 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAACATTCAGC-ACCAATTC--AGTGT
451 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
11069914 ACAAGA--TTCTG-CCATTTG-AAAAAGTGTCCCCATTTTAGACACTTT-ATGGCTA-T-GCAGC
516 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
11069972 -AACCTGTAAAATCTCAAATGCT-TTTTA-GGGGTGTGA-TCCTC-AGG-TTGATGA-GGATA--
581 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* ** * * * *
11070028 -GGCCAATATAA-GGCCAA-TACCCGCCACCCATCTTACATCATGTGCACACAGCCCCTGCCCCC
646 GGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * * * * ** *
11070090 CCGATTG-CAGAACCGCAATGCCTCC-ATCAGGTTCT--GGCGATGCTTTGACGA-GGTG-CCCG
710 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCG
* * * * * **
11070149 ACGAAGAAAAA-ATGTTGCA-CA-CACA------A---CAGCACGTG-TACTGTAA-CC-C--AA
775 GCGAAGAAAAATACG--GCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
** *
11070197 CAAT---ATCTTAGACT-GGAATGACACTCTGTAT-CTTAGACT-GGAATG-ACTCCG
838 CGGTCCGATCTTAGACTGGGAATGA-ACTCCGTATGCTTAGACTGGGAATGAACTCCG
* **
11070248 TTATGCCTAAGTCAACCCATG-AACGAGC-TGCGGGCGCTCAGTCGGCCAGAGGGATGGGATGCG
1 -TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * * * * *
11070311 CAAGCCGGGGATCGATCGGATCCCCTTCTGCATGCTGTCGATCCTGCTACCCCAACCCTCGGTTC
65 CAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCC
* * * ** * * * *
11070376 AGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAACGAGCTTG-C-A
130 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGACGG
* * ** * * * * *** *
11070439 G-GTGCTC-A-GCCTACCAGA-AG-GGTGAGATGCGTAAGCCGGGGATTC-AGTCGGGTCCCCAT
194 GCGGGCACTACGCCGGCCAGAGAGACG-G-GATGCGCAAGCCGTGGA-TCGA-TAGGGT-GGTAG
* ** * * * *** * * ** **
11070498 CTGCATGCT--GCTACAAC--CCTCGGTCTG-GT-CC---G--A-TCTTA--GATTGGGAATGAA
254 GTGGGT-TTAGGC-ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* ** ** *** ** ** *
11070549 CTCCATAT-G--CC-TAAGCCAACCGACGAAACGAGCGGGCGGGGCGGGCGGGCGGGCACTACGT
317 -TACA-ATGGTCCCTTAAGCC-TTC-ACGTGA--AG-TTTCATGGC---AAGAC--G-ACT-CGT
*** * ***** *** * * * * ** *
11070610 CGACCA-AAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTAGTAGCTGGGTTTAGGCACATC
368 TTTCTATTTTTCAC--GATTTTCAA-------AAC--T---TT--TTGC--GG-TTCGGGATTTT
* * * * * * *** *** * * * *
11070674 TTCATATTTCTACGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCC
414 TTAAAATTTTTTCG-G--AA-G-GA-GTTT-TGGC-CCCAAA--C-T-TGGTAG--ACGTGATCC
* ** ** * *** ** * *** ** * *
11070739 TTCACGAGAAGTTTCATGGCAAG-ACGACTCATTTTCTA-TTTTTAA-T-GATTTTTA-AA-ACT
465 TT---G-TATTTTTGTTGGCATGCAC-AAAAAAATTC-AGCTAAAAACTCGAAGTGTACAAGATT
** * ** *** * *** * * *
11070798 TT-TGACGGTTCG-GGATTTTTTAAACATTTTTCAGA-AGGTGTT-TTGGTCCCTAACTTGGTAG
524 TTGTGACCATTTGAAAAAAGTGTCCCCA--TTTCAGACA-CT-TTAATGG---CT-AC-TGGCAG
* *** * *** * *** **** * *** * * *
11070859 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-GTCAAAACTCGAAGTGT-A-C
580 -CA--AACC-TGTA-AAAT-CTCAAATGCTC--TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* ** * * * ** * * *** * * * * *
11070921 A-AGATTTTGTGACC-ATTTGAA---AAAAGTGTCC-CCA-TTTTAGACACTTTA-ATG-GC-TA
637 AGGGA-TAGGGGGCCAATAT-AAGGGCCAAGT-ACCAGCACCCATCG-CACATCATGTGCGCACA
*** * *** ** * * * ** * ** * *
11070976 -CTGGCAGCAAACC--T-GT-AAAATCTCAAATG-C-TCTTTAAGGGGCT---GTGAGTTCTCAA
698 CCCCCCGGCCCCCCGATCGTCGGAA-CCCCAATGCCGCCGGTCAGGTTCTCCGGTGA-TGCTC-C
* *** * * **** * * * * *
11071031 GGCTTGATGAGGGATCGGGGGCCAATACAAGGGCCAAGTACCAGCAC---CCAT-CGCACATCAT
760 GGC--GATG-GTG--CCCCGGCGAAGA-AAAATAC-GGCACCAGCACATGCC-TGAGCCCAGCAT
* * * ** * ** * * * * * **
11071092 GTG--AGCACACCCCTCGG-CC-CCCCGATCGTCAGAACT-CTAATG-TCGCCGGACAGGTT-CT
817 GTGCTACCGCAACCCTCGGTCCGGTCCGATC-TTAG-ACTGGGAATGAACTCCGTA-TGCTTAGA
* *
11071150 CTAGCG-AT--CCTCCG
879 CT-GGGAATGAACTCCG
* * * *** * * * * *
11071164 -ATG---ATG-GAGCCC-TGATGAA-GAAAAATACGGGACCAGCACATGCCTGAGCCCAACATGT
1 TATGCCTAAGTCAACCCATGA--AACG-AGCGTGCGGG--C-GCTCA-GCC-G-G-CC-AGAGGG
** ** * ** * * * * *** ** *
11071222 GCTGCCACAACCCTCGGTCTGGTTCGATCTTAAACTGGAAAT-AAACTCTGTATGCCTAAGTCAA
55 GC-GGGA-TGCGC-AAG-CTGG--GGATC---GACCGG--GTCCCCCTCTGCGTG-CT--GTCGA
* * ** * * *** * * *
11071286 CCCACGAAACGAGTG-CGCGGGCGCTCAG-CC-GACC-A-AAGAGGC-GGG-ATGCATAAGTCGG
106 TCC-TG---C---TGCCGC-AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATG---AACTC-C
* ** ** ** * *** *** * * ** *
11071344 GGATCGGTTGGGTCCCCCTCCTGCTACTGTAACCCTCAGTTTGGTC-TG-ATCTTA-GATTGG-G
159 GTAT-GCCTAAG---CCAACC-G--AC-GAAACGAGC-GGACGGGCGGGCA-C-TACG-CCGGCC
** * * * * * ** * ** * *
11071405 ATTGA-ACTCCGTATGC-CTAAGCGAACCGACGAAACGAGCGGGCGGGCGGACGGG--CAGGCAC
212 A--GAGAGACGGGATGCGC-AA--G--CCG-TGGATCGATAGGGTGGTAGG-TGGGTTTAGGCAC
** * *** * * * * ** * * ** *** **
11071466 TATGTCCGCCAGAGAGACAAGATGTG-CAA-GCCGTGGATCGATAGGGTGGTAGGTGGGT-TTA-
268 -A--T-CTTCATA-TTTC-TG-CGTGCCAATGCCAT--TTTTAT-GGCTTGTAAATTCATACAAT
* * ** * * *
11071527 GG-CACTT----CTTCA--T--ATTTTTGTGTGCCAATG-CCA-T-TTTTATGGCT-TGTAAATT
323 GGTCCCTTAAGCCTTCACGTGAAGTTTCATG-G-CAA-GACGACTCGTTT-T--CTAT-T--TTT
* ** ** * * * **
11071579 CATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT-CTA-TTT
379 C--ACGAT--T---TTCAAAACTT--TTTG-CGGTTC---G---G--GA-T-TTTTTAAAATTTT
* * * ** * * * *
11071641 TTC---ACGA-TTTTTG----AAACTTTTTGCGGTTCGGGAT-GTTTTAAAATTTTT-TT-G---
424 TTCGGAAGGAGTTTTGGCCCCAAAC--TTGGTAG-ACGTGATCCTTGT---ATTTTTGTTGGCAT
** *** * * * ** *
11071692 G-A-AGGAGTTTTCACCCT--AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
483 GCACAAAAAAATTCA-GCTAAAAAC-TCG-A-A-GTG-TACAAG-A-TTTTG-T-G-A-CCAT--
*** ** * **
11071753 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC-CATTTGAAAAAAGTGTCCCCAT
534 -----TT--G---AAAA----AAGTGT-CCCCA-TTTCAGACAC-TTT-----AA-TGGCTAC-T
** * * * * * *
11071817 TTCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GT-
575 GGCAG---C---AAA--C--CT-GTA--AAA--TCTCAAAT-GC---T-CT-TTAAGGGGGTGTG
* *** * ** * *
11071880 -G---T-GA-GTTCTCGAGGTTTGAT-GAGGG---ATA-GGGGGCCAATATAAGGGCCAAGTA-C
619 AGTTCTCGAGGTT-T-GATGAGGGATAGGGGGCCAATATAAGGGCCAA-GT-A---CC-AGCACC
* * * * * ** **
11071933 CAGCACCCATCGCAAATCATGTGTGCACACCCCCCGGCCCCCCGA-CCACTGGAA-CCCAATGCC
676 CATCGCACAT--C--AT-GTGCGCACAC-CCCC-CGGCCCCCCGATCGTC-GGAACCCCAATGCC
* * * * ** *
11071996 ACCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGC
733 GCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGC
* * ** * *
11072061 ACATGCCCGAGCCCAGTATGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
798 ACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
*
11072126 ACTCCATATGCTTAGACTGGGAATGAACTCCG
863 ACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * ** * * * *
11072158 TATGCCTAAGTCAACCGATGAAATGAACGTATGGGCGCTCTGCCAGCCAGAGGGACGGGATGCAC
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* ** * * * * * *
11072223 AAGCCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCTTCGGTCTG
66 AAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCG
* * *
11072288 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAAAGAGCGGACGGGC
131 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGA----C
* * *
11072353 GGGCGTGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTA
192 --G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** ** *
11072418 GGTGAATTTAGGCACATCTTCATATTTCTATGTGCCATTGCCATTTTTATGGCTTGTAAATTCAT
253 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
11072483 ACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
318 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** ** * *
11072548 ATTTTTGAAACTTTTTGCGGTTTAGGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGACCCAAA
383 ATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * *
11072613 CTTGGTAGATGTGATCCTTGTATTTTTGTTGTCATGCATAAAAAAATTCAACTAAAAACTCGAAG
448 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
11072678 TGTACAAGATTTTGGGACCATTTG-AAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGC
513 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * * *
11072742 AGCAAACCTGTAAAATCCCATATGCTCTTTAAAGGGGTGCGAGTTCTTGAGGTTTGATGAGGGAT
578 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * * *
11072807 AGGGGGCCAGTATAAGGGCCAAGTACGAGCACCCATCGCACATAATGTGTGCACACCCCCTTGGC
643 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGC
* * * * *
11072872 ACCCCCGATTGTCGAAACCCCAATGTCGCCTGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
707 -CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGC
** **
11072937 CCCGATGAAGAAAAATGA-GGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCG
771 CCCGGCGAAGAAAAAT-ACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCG
* * * ** * *
11073001 ATCTGGTCCGATCTTAGAGTGGGAATGAACTTTGTATGCTTAGACTGAGAATAAACTCCG
835 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
11073061 TATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGT
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * *
11073126 AAG-TCGGGGATC-AGTCGGGT-ACCCTCTGCGTGCTATCGATCCTACTGCCACAACCCTCAGTC
66 AAGCT-GGGGATCGA-CCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTC
** ** *
11073188 TAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGTGG
129 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GG
** * *
11073253 GTGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
190 ACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
11073318 TGGGTTTAGGCACATCTTCATATTTCCGCATTCCAATGCCATTTTTAAGGCTTGTAAATTCATAC
255 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
11073383 AATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
320 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * *
11073448 TTTTAAAACTTTTTGCGATTCGAGATTTTTTAAAATTTCTTCGAAAGGAGTTTTGGCCCCAAACT
385 TTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
11073513 TGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGGC-AAAAACTCGAAGT
450 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA-GCTAAAAACTCGAAGT
* * *
11073577 GTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTACACACTTTAATGGCTACTGGCA
514 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
11073642 GCAAACCTGAAAAATCTCAAATGCTCTTTAAGGTGGTGTAAGTTCTTGAGGTTTGATGAGGGATA
579 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
11073707 TGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCC
644 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* *
11073772 CCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCT-C--T-A-------GCGATGGTGCCCC
709 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCC
* * *
11073826 AGCGAAGAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATGTGCTATCGCAACCCTCGGTCC
774 GGCGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCC
*
11073891 GGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
839 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * *
11073947 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGT
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * *
11074012 AAG-TCGAGGTTCGACCGGGT--CAC-C--C-T-CTG-C-AT--T-CTGCCGCAACCC-CTGGTC
66 AAGCT-GGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC-AGTC
* * * * * *
11074063 CGGTCCAATCTTAGACTGAGAATAAACTCCTTATGCCAAAGCCAACTGACGAAACGAGTGGGCGG
129 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGG
* * * * *
11074128 GCGGGCAGGCACTACGCGGGCCACAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGG
190 ACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
11074193 T-GGATTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
255 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
11074257 AATGGTCCCTTAAGCCTTCACGTGAAATTTCTTGGCAAGACGACTCGTTTTCTATTTTTCACGAT
320 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
11074322 TTTCAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAGGGAGTTTTGGCCCCAAACT
385 TTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
11074386 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAACTAAAAACTCGAAGTG
450 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
11074451 TACAAGATTTTGTGACCATTTGAAAAAACTATCCCCATTTTAGATACTTTAATGGCTACTGGCAG
515 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
11074516 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
580 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * * *
11074581 GGGGTCAATTTAAGGGCCAAGTACCAGCACCCAACACACATAATGTGCGTACACCCCCACCGGTC
645 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGG-C
* * * *
11074646 CCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCC
707 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCC
* * * * * * *
11074711 CTGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGGT
772 CCGGCGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGT
* * *** * *
11074776 CTGATCCGATCTTAGACTAAAAATGAACTCCGTATGCTTAGACT-GCAA-GAACTTC-
837 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * ** * *
11074831 TATGCCTAAG-CAACCCAT-AAAAGAGCGTGCGGGCACGTCAGTCGACCAGA-ATGCAGG-CGCG
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC-TCAGCCGGCCAGAGGGGCGGGATGCG
** * * *
11074892 CAA-C-CAGGATC-ACCTGGTGCCCCCTCTGCGTGCTATCGATCCTAGCT-ACGCAACCCTTC-G
65 CAAGCTGGGGATCGACCGGGT-CCCCCTCTGCGTGCTGTCGATCCT-GCTGCCGCAACCC-TCAG
* * * * * *
11074952 TCTCTGGTCTGATCATAGACT-GGAAT-AACTCTGTTTG-CGAAGCCAACCGA-GAAA--AGGGG
127 TC-C-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * *
11075011 CAC--AC-GGCAGCTAAGTCGACC-GAGA-AC-GGA-G-GTAAGCCGTGGATCCGATA--GTGGT
190 -ACGGGCGGGCA-CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT-CGATAGGGTGGT
* * * *
11075066 AGATGGG-TTAGGCACA-CTTCATATTTC-GCATGCC--TGCCATTTTTA-CGC-TGCTGAATTC
252 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG-TAAATTC
* *
11075124 ATACAAT-GTCCCTTAAG-TTTCACGTGGAAG-TTCATGGCAAGA-GA-T-GTTTTTTATTTTTC
316 ATACAATGGTCCCTTAAGCCTTCACGT-GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * *
11075183 ATGATTTT----AC-TTTTGCGATTCGAGATTCTTTAAAATTTTTTCGGAAGTG-GTTTTGGCCC
380 ACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG-GAGTTTTGGCCC
11075242 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
444 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
11075307 TAAGTGTAAAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
509 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
11075372 TAGG-AGCAAACCTGTTAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGA
574 T-GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
11075436 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCC
638 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC
** ** *** *
11075501 CCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGACAATGCTCCGACGA
701 CCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGA
* ** * * * *
11075566 TGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCACAAC
765 TGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAAC
* * * *
11075631 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCATATTCTTAGACTGGGAATGAACTCCG
830 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
11075696 TATGCCTAAGTCAACCCAAGAAACGAGCGTACGGGCGCTCAGCAGGCTAGAGGGGCGGGATGCGC
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* ** * *
11075761 AAGCCGGGGATCGATTGGGT-CCCC-CT-C-TG-TGT-G---CTG-T--CACAACCCTCAGTCTG
66 AAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCG
* * * * * *
11075814 GTCCGATCTTAGATTGAGAATGAACTTCGTATGCCAAAGCCAACCGATGAAATGA---G-CGGGC
131 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGC
* * * *
11075875 GGGCTCTACGCCAGCCAGAG-GACGAGATGCGCAAGCCGTGGATCGCTAGGGTGGTAGGTGGGTT
196 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
11075939 AAGGCACATCTTCATATTTCTGCGTGCAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
261 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
11076004 CCCTTAAGCCTTCACATGAAATTTCTTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
326 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
* ** * *
11076069 AAC-TTTTACATTTCGAGATTTTTTAGAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTA
391 AACTTTTTGCGGTTCGGGATTTTTTA-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
11076133 GTCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAA
455 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
11076198 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
520 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
11076263 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGGC
585 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
11076328 CAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCGGCGCCTCCGA
650 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGA
** * * ** * ** * **
11076393 TCACCGAAACCCCAATGTCATCGGTCATGTTCTCCGACGATGCTCCGGCAATGGTGCCCCCACGA
714 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGA
* * * * * * * *
11076458 AGAAAAATACGGCACCAGCACAAGCCTGAGCCTAGCATGTGCTGCCCCAACCCTCAGTCTGATCA
779 AGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCC
* * *
11076523 GATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTTCA
844 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * * * *
11076574 TATGCCTATGTCAACCCACGAAACGAGCATGCAGGTGCTTAGCTGGCTAGAGGGGCGGGATGCAC
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * ** * * * *
11076639 AAGCCGGGGATCAATCGGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCACAACCCTCGGTCTG
66 AAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCG
* * *
11076704 GTCCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC--A--GGC
131 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGC
* *
11076765 GGGCACTATGCCGGCCAGA-AGGGCGGGATGCG
196 GGGCACTACGCCGGCCAGAGA-GACGGGATGCG
11076797 TAACACGGGG
Statistics
Matches: 7089, Mismatches: 1453, Indels: 1296
0.72 0.15 0.13
Matches are distributed among these distances:
828 6 0.00
829 2 0.00
830 11 0.00
831 4 0.00
832 8 0.00
833 5 0.00
835 1 0.00
836 2 0.00
838 3 0.00
839 9 0.00
840 31 0.00
841 16 0.00
842 10 0.00
843 1 0.00
846 3 0.00
847 1 0.00
848 131 0.02
849 12 0.00
850 25 0.00
851 14 0.00
852 17 0.00
853 2 0.00
855 4 0.00
856 13 0.00
857 10 0.00
858 29 0.00
859 34 0.00
860 20 0.00
861 14 0.00
862 426 0.06
863 25 0.00
864 21 0.00
865 24 0.00
866 52 0.01
867 26 0.00
868 11 0.00
869 41 0.01
870 53 0.01
871 41 0.01
872 47 0.01
873 266 0.04
874 161 0.02
875 176 0.02
876 71 0.01
877 30 0.00
878 282 0.04
879 68 0.01
880 287 0.04
881 82 0.01
882 34 0.00
883 27 0.00
884 28 0.00
885 14 0.00
886 202 0.03
887 121 0.02
888 12 0.00
889 32 0.00
890 98 0.01
891 52 0.01
892 721 0.10
893 503 0.07
894 25 0.00
895 23 0.00
896 70 0.01
897 396 0.06
898 324 0.05
899 177 0.02
900 268 0.04
901 26 0.00
902 118 0.02
903 238 0.03
904 3 0.00
905 8 0.00
906 6 0.00
907 20 0.00
908 70 0.01
909 8 0.00
910 7 0.00
911 17 0.00
912 13 0.00
913 6 0.00
914 4 0.00
915 8 0.00
916 17 0.00
917 13 0.00
918 2 0.00
919 2 0.00
920 2 0.00
921 3 0.00
922 6 0.00
923 6 0.00
924 3 0.00
925 3 0.00
927 4 0.00
928 3 0.00
929 15 0.00
930 8 0.00
931 16 0.00
932 5 0.00
934 8 0.00
935 9 0.00
936 6 0.00
937 5 0.00
938 9 0.00
939 12 0.00
940 7 0.00
941 12 0.00
942 1 0.00
943 3 0.00
944 1 0.00
946 7 0.00
947 9 0.00
948 11 0.00
949 7 0.00
950 3 0.00
951 16 0.00
952 19 0.00
953 11 0.00
954 14 0.00
955 8 0.00
956 21 0.00
957 15 0.00
958 13 0.00
959 24 0.00
960 14 0.00
961 19 0.00
962 14 0.00
963 15 0.00
964 9 0.00
965 7 0.00
966 20 0.00
967 16 0.00
968 13 0.00
969 9 0.00
970 26 0.00
971 27 0.00
972 18 0.00
973 12 0.00
974 10 0.00
975 5 0.00
976 11 0.00
977 7 0.00
979 3 0.00
980 7 0.00
981 1 0.00
982 3 0.00
983 1 0.00
984 5 0.00
985 9 0.00
986 7 0.00
987 11 0.00
988 13 0.00
989 9 0.00
990 21 0.00
991 24 0.00
992 17 0.00
993 4 0.00
994 11 0.00
995 6 0.00
996 1 0.00
998 11 0.00
999 4 0.00
1000 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
AAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCG
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAG
AAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
Found at i:11068493 original size:26 final size:26
Alignment explanation
Indices: 11068454--11068506 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11068444 TCAGTCTGAT
*
11068454 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
11068480 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
11068506 C
1 C
11068507 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:11072146 original size:26 final size:26
Alignment explanation
Indices: 11072110--11072162 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11072100 CTGGTCCGAT
11072110 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11072136 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11072162 C
1 C
11072163 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11073928 original size:26 final size:26
Alignment explanation
Indices: 11073899--11073951 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11073889 CCGGTCCGAT
11073899 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
11073925 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
11073951 C
1 C
11073952 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:11075351 original size:862 final size:877
Alignment explanation
Indices: 11070384--11076747 Score: 6784
Period size: 862 Copynumber: 7.2 Consensus size: 877
11070374 TCAGTCCGAT
* * * * * * *
11070384 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAACGAGCTTGCAGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT-AAAAGAGCGTGCGGGCGCTCAG-
** * * * * * * *
11070449 CTACCAGAAGGGTGAGATGCGTAAGCCGGGGATTCAGTCGGGTCCCC-ATC-TGC-AT-G---CT
64 CGGCCAGAGGGGCGGGATGCGCAAGCC-GGGA-TCACT-GGGCCCCCTCTCGTGCTATCGATCCT
* * ** *
11070507 GCT-ACAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCG
126 GCTCGCAACCCTC-GTCTGGTCCGATCTTAGACT-GGAATGAACTCTGTATGCCAAAGCCAACCG
* * * * *
11070571 ACGAAACGAGCGGGCGGGGCGGGCGGGCGGGCACTACGTCGACCAAAGAGACGGGATGCGCAAGC
189 ATGAAA-GAGAGGGC---GC--AC-GGC-AG--CTACGTCGACCAGAGAGACGGGATGCGCAAGC
* * * * *
11070636 CGTGGATCGATAGGTTAGTAGCTGGGTTTAGGCACATCTTCATATTTCTACGTGTCAATGCCATT
244 CGTGGATCGATAGG-TGGTAGGTGGG-TTAGGCACATCTTCATATTTC-GCATG-CCATGCCATT
* *
11070701 TTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACGA
305 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
11070766 CTCATTTTCTATTTTTAATGATTTTTAAAAC-TTTTGACGGTTCGGGATTTTTTAAACA-TTTTT
370 CTCGTTTTCTATTTTTCACGATTTTT--AACTTTTTG-CGATTCGAGATTTTTTAAA-ATTTTTT
* * * * *
11070829 CAGAAGGTGTTTTGGTCCCTAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
431 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
11070894 AAATTCAGGTCAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
496 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
11070959 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAG
561 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
11071024 TTCTCAAGGCTTGATGAGGGATCGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCGCACAT
626 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * * * **
11071089 CATGTGAGCACACCCCTCGGCCCCCCGATCGTCAGAACTCTAATGTCGCCGGACAGGTTCTCTAG
691 CATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * * * * * * *
11071154 CGATCCTCCGATGATGGAGCCCTGATGAAGAAAAATACGGGACCAGCACATGCCTGAGCCCAACA
756 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
11071219 TGTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAAACT-GG-A--AA-----TA--
821 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
11071265 ---A-AC------T---CT--GTATGCCTAAGTCAACCCACGAAACGAGTGCGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-TAAAAGAGCGTGCGGGCGCTCAG-
* * * ** * **
11071315 CGACCAAAGAGGCGGGATGCATAAGTCGGGGATCGGTTGGGTCCCCCTC-C-TGC--T--A--CT
64 CGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATC-ACTGGG-CCCCCTCTCGTGCTATCGATCCT
* * * * * * *
11071372 G-T---AACCCTCAGTTTGGTCTGATCTTAGATTGGGATTGAACTCCGTATGCCTAAGCGAACCG
126 GCTCGCAACCCTC-GTCTGGTCCGATCTTAGACT-GGAATGAACTCTGTATGCCAAAGCCAACCG
* * * ** *
11071433 ACGAAACGAGCGGGCGGGCGGACGGGCAGGCACTATGTCCG-CCAGAGAGACAAGATGTGCAAGC
189 ATGAAA-GAGAGGGC--GC--AC-GGCA-G--CTACGT-CGACCAGAGAGACGGGATGCGCAAGC
* * **
11071497 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTTTGTGTGCCAATGCCATT
244 CGTGGATCGATA-GGTGGTAGGTGGG-TTAGGCACATCTTCATA-TTTCGCATGCC-ATGCCATT
11071562 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
305 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
11071627 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATGTTTTAAAATTTTTTTG
370 CTCGTTTTCTATTTTTCACGATTTTT--AACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCG
** * *
11071692 GAAGGAGTTTTCACCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAA
433 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
11071757 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
498 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
11071822 ACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
563 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
11071887 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCA
628 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
11071952 TGTGTGCACACCCCCCGGCCCCCCGACCACTGGAA-CCCAATGCCACCGGTCAGGTTCTCCAGCG
693 TGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
* *
11072016 ATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTATG
758 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
11072081 TGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
823 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
11072136 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGATGAAATGAACGTATGGGCGCTCTGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT-AAAAGAGCGTGCGGGCGCTCAG-
* * * ** * **
11072201 CAGCCAGAGGGACGGGATGCACAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCCGATCC
64 CGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCACT-G-GGCCCCCTCT-CGTGCTATCGATCC
* * *
11072266 TGCTGCCGCAACCTTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
125 TGCT--CGCAACCCTC-GTCTGGTCCGATCTTAGACT-GGAATGAACTCTGTATGCCAAAGCCAA
* *
11072331 CAGATGAAAAGAGCGGACGGGCGGGCGTGCGGGCA-CTACGTC-AGCCAGAGAGACGGGATGCGC
186 CCGATG-AAAGA---GA-GGGC--GC--AC-GGCAGCTACGTCGA-CCAGAGAGACGGGATGCGC
* ** *
11072394 AAGTCGTGGATCGATAGGGTGGTAGGTGAATTTAGGCACATCTTCATATTTC-TATGTGCCATTG
240 AAGCCGTGGATCGATA-GGTGGTAGGTG-GGTTAGGCACATCTTCATATTTCGCA--TGCCA-TG
*
11072458 CCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
300 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
11072523 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-TAGGATTTTTTAAACTT
365 GACGACTCGTTTTCTATTTTTCACGATTTTT--AACTTTTTGCGATTCGA-GATTTTTTAAAATT
* * * *
11072587 TTTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGTCATGCAT
427 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
11072652 AAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTG-AAAAAGTGTCCTCA
492 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
11072716 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCATATGCTCTTTAAAGGGGTG
557 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
11072781 CGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACGAGCACCCATCGC
622 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * * * *
11072846 ACATAATGTGTGCACACCCCCTTGGCACCCCCGATTGTCGAAACCCCAATGTCGCCTGTCAGGTT
687 ACATCATGTGCGCACACCCCC-CGGC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
11072911 CTCCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGAGGCACCAGCACATGCCTGAGC
750 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * **
11072976 CCAGCATGTGCTGTCGCAACCCTCGATCTGGTCCGATCTTAGAGTGGGAATGAACTTTGTATG
815 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
11073039 CTTAGACTGAGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-TAAAAGAGCGTGCGGGCGCTCAG-
* * * * **
11073104 CGGCCAGAGGGGTGGGATGCGTAAGTCGGGGATCAGTCGGGTACCCTCTGCGTGCTATCGATCCT
64 CGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCACT-GGGCCCCCTCT-CGTGCTATCGATCCT
* * * ** * *
11073169 ACTGCCACAACCCTCAGTCTAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
126 GCT--CGCAACCCTC-GTCTGGTCCGATCTTAGACT-GGAATGAACTCTGTATGCCAAAGCCAAC
* *
11073234 CGATGAAACGAGCAGGTGGGTGGGCA-GGCA-CTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
187 CGATGAAA-GAG-A----GG-GCGCACGGCAGCTACGTCGACCAGAGAGACGGGATGCGCAAGCC
*
11073297 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCGCATTCCAATGCCATTT
245 GTGGATCGATA-GGTGGTAGGTGGG-TTAGGCACATCTTCATATTT-CGCATGCC-ATGCCATTT
* *
11073362 TTAAGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
306 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
11073427 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGATTCGAGATTTTTTAAAATTTCTTCGA
371 TCGTTTTCTATTTTTCACGATTTTT--AACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGG
*
11073492 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAA
434 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
11073557 TTCAGGC-AAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAC
499 TTCA-GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
11073621 ACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGTGGTGTAAGTT
563 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
11073686 CTTGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
628 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
11073751 TGTGCGCACACCCCCCGACCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGG-T-T----C-
693 TGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
* * **
11073809 -T-CT-AG-CGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCACATGCTTGAGCCCAGCAT
758 ATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
** * *
11073869 GTGCTATCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATG
822 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
11073925 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT-AAAAGAGCGTGCGGGCGCTCAGC
* * * * * * *
11073990 TGGCCAGAGGGGCAGGATGCGTAAGTCGAGGTTCGACCGGGTCACC-CTC-TGC-AT---T-CTG
65 -GGCCAGAGGGGCGGGATGCGCAAGCCG-GGATC-ACTGGGCCCCCTCTCGTGCTATCGATCCTG
* * * * *
11074048 C-CGCAACCCCTGGTCCGGTCCAATCTTAGACTGAGAATAAACTCCT-TATGCCAAAGCCAACTG
127 CTCGCAA-CCCTCGTCTGGTCCGATCTTAGACTG-GAATGAACT-CTGTATGCCAAAGCCAACCG
* * ** * *
11074111 ACGAAACGAGTGGGCGGGCGGGCAGGCACTACG-CGGGCCACAGAGACGGGATGCGCAAGCCGTG
189 ATGAAA-GAGAGGGCGCAC-GGCA-G--CTACGTC-GACCAGAGAGACGGGATGCGCAAGCCGTG
* *
11074175 GATCGATAGGGTGGTTGGTGGATTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
248 GATCGATA-GGTGGTAGGTGGGTTAGGCACATCTTCATATTTC-GCATGCC-ATGCCATTTTTAT
* *
11074240 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCTTGGCAAGACGACTCGT
310 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
11074305 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAGAGGG
375 TTTCTATTTTTCACGATTTT--TAACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGGAAGG
* *
11074369 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCA
438 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * * *
11074434 ACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTATCCCCATTTTAGATACT
503 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
11074499 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
568 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * * *
11074564 GGTTTGATGAGGGATAGGGGGTCAATTTAAGGGCCAAGTACCAGCACCCAACACACATAATGTGC
633 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
11074629 GTACACCCCCACCGGTCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGAT
698 GCACA-CCCC-CCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
** * * *
11074694 GCTCCGGTGATGGTGCCCTGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGTATGTG
760 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* ***
11074759 CTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTAAAAATGAACTCCGTATG
825 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
11074812 CTTAGACT-GCAA-GAACTTC-TATGCCTAAG-CAACCCATAAAAGAGCGTGCGGGCACGTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAAGAGCGTGCGGGCGC-TCAG-
* ** * * *
11074873 CGACCAGA-ATGCAGG-CGCGCAA-CCAGGATCACCTGGTGCCCCCTCTGCGTGCTATCGATCCT
64 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCA-CTGG-GCCCCCTCT-CGTGCTATCGATCCT
* * * *
11074935 AGCTACGCAACCCTTCGTCTCTGGTCTGATCATAGACTGGAAT-AACTCTGTTTG-CGAAGCCAA
126 -GCT-CGCAACCC-TCG--TCTGGTCCGATCTTAGACTGGAATGAACTCTGTATGCCAAAGCCAA
* * *
11074998 CCGA-GAAA-AG-GGGCACACGGCAGCTAAGTCGACC-GAGA-AC-GGA-G-GTAAGCCGTGGAT
186 CCGATGAAAGAGAGGGCGCACGGCAGCTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
11075055 CCGATA-GTGGTAGATGGGTTAGGCACA-CTTCATATTTCGCATGCC-TGCCATTTTTA-CGC-T
251 -CGATAGGTGGTAGGTGGGTTAGGCACATCTTCATATTTCGCATGCCATGCCATTTTTATGGCTT
* *
11075115 GCTGAATTCATACAAT-GTCCCTTAAG-TTTCACGTGGAAG-TTCATGGCAAGA-GA-T-GTTTT
315 G-TAAATTCATACAATGGTCCCTTAAGCCTTCACGT-GAAGTTTCATGGCAAGACGACTCGTTTT
* * *
11075174 TTATTTTTCATGA-TTTT-AC-TTTTGCGATTCGAGATTCTTTAAAATTTTTTCGGAAGTG-GTT
378 CTATTTTTCACGATTTTTAACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGGAAG-GAGTT
11075235 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
442 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
11075300 AAAACTCTAAGTGTAAAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACACTTTAA
507 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
11075365 TGGCTACTAGG-AGCAAACCTGTTAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
572 TGGCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
11075429 TTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCA
636 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* ** * *
11075494 CACCCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGACAATGCT
701 CA--CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
** * *
11075559 CCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCTG
763 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
11075624 CCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCATATT
828 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
11075674 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-AGAAACGAGCGTACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATA-AAA-GAGCGTGCGGGCGCTCAG
* *
11075738 CAGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATTGGGTCCCCCTCT-GTG---T-G---C
64 C-GGCCAGAGGGGCGGGATGCGCAAGCC-GGGATC-ACTGGG-CCCCCTCTCGTGCTATCGATCC
* *
11075795 TG-TCACAACCCTCAGTCTGGTCCGATCTTAGATTGAGAATGAACT-TCGTATGCCAAAGCCAAC
125 TGCTCGCAACCCTC-GTCTGGTCCGATCTTAGACTG-GAATGAACTCT-GTATGCCAAAGCCAAC
* * * *
11075858 CGATGAAATGAGCGGGCG---GGC-TCTACG-CCAGCCAGAG-GACGAGATGCGCAAGCCGTGGA
187 CGATGAAA-GAGAGGGCGCACGGCAGCTACGTCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
11075917 TCGCTAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTCTGCGTGCAAATGCCATTTTTATG
250 TCGATA-GGTGGTAGGTGGGTT-AGGCACATCTTCATATTTC-GCATGC-CATGCCATTTTTATG
* * *
11075982 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAATTTCTTGGCAAGACGACTCGTT
311 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
11076047 TTCTATTTTTCACGATTTTCAAAAC-TTTTAC-ATTTCGAGATTTTTTAGAAATTTTTTCGGAAA
376 TTCTATTTTTCACGATTTT--TAACTTTTTGCGA-TTCGAGATTTTTTA-AAATTTTTTCGGAAG
* * *
11076110 GAGTTTTGGCCCCAAACTTGGTAGTCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTC
437 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
11076175 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
502 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
11076240 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
567 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
11076305 AGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTG
632 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * ** * *
11076370 CGCACACCCCCCGGCGCCTCCGATCACCGAAACCCCAATGTCATCGGTCATGTTCTCCGACGATG
697 CGCACACCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * * * * * *
11076435 CTCCGGCAATGGTGCCCCCACGAAGAAAAATACGGCACCAGCACAAGCCTGAGCCTAGCATGTGC
761 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
11076500 TGCCCCAACCCTCAGTCTGATCAGATCTTAGACTGGGAATGAACTCCGCATG
826 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * * *
11076552 CTTAGACTGGGAATGAACTTCATATGCCTATGTCAACCCACGAAACGAGCATGCAGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-TAAAAGAGCGTGCGGGCGCTCAGC
* * * * * *
11076617 TGGCTAGAGGGGCGGGATGCACAAGCCGGGGATCAATCGGGTCCCCCTCTGCATGCTACCGATCT
65 -GGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCACT-GGG-CCCCCTCT-CGTGCTATCGATCC
* * * *
11076682 TGCTGCCACAACCCTCGGTCTGGTCCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
125 TGCT--CGCAACCCTC-GTCTGGTCCGATCTTAGACT-GGAATGAACTCTGTATGCCAAAGCCAA
11076747 C
186 C
11076748 TGACGAAACG
Statistics
Matches: 4722, Mismatches: 542, Indels: 429
0.83 0.10 0.08
Matches are distributed among these distances:
856 17 0.00
857 7 0.00
858 18 0.00
859 19 0.00
860 126 0.03
861 487 0.10
862 507 0.11
863 27 0.01
864 23 0.00
865 32 0.01
866 113 0.02
867 23 0.00
868 13 0.00
869 36 0.01
870 48 0.01
871 36 0.01
872 29 0.01
873 267 0.06
874 150 0.03
875 138 0.03
876 59 0.01
877 18 0.00
878 256 0.05
879 36 0.01
880 273 0.06
881 11 0.00
882 32 0.01
883 25 0.01
884 19 0.00
885 20 0.00
886 265 0.06
887 112 0.02
888 7 0.00
889 10 0.00
890 68 0.01
891 15 0.00
892 4 0.00
893 17 0.00
895 4 0.00
896 2 0.00
897 30 0.01
898 307 0.07
899 156 0.03
900 161 0.03
901 359 0.08
902 99 0.02
903 223 0.05
904 3 0.00
905 15 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (877 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAAGAGCGTGCGGGCGCTCAGCG
GCCAGAGGGGCGGGATGCGCAAGCCGGGATCACTGGGCCCCCTCTCGTGCTATCGATCCTGCTCG
CAACCCTCGTCTGGTCCGATCTTAGACTGGAATGAACTCTGTATGCCAAAGCCAACCGATGAAAG
AGAGGGCGCACGGCAGCTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTGG
TAGGTGGGTTAGGCACATCTTCATATTTCGCATGCCATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTAACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
TCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:11076841 original size:159 final size:162
Alignment explanation
Indices: 11076655--11076946 Score: 378
Period size: 159 Copynumber: 1.8 Consensus size: 162
11076645 GGGATCAATC
* * *** *
11076655 GGGTCCCCCTCTGCATGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGTCCT-ATCTTAGACT
1 GGGTCCCCCTCTACATGCTACCAATCTTGCTGCCACAACCCTCGGTCCAAT-ATGATCTTAGACT
* *
11076719 AGGAATGAACTCCGTATGCCTAAGCCAA-C-T-G-ACGAAACGAGCAGGCGGGCACTATGCCGGC
65 AAGAATGAACTCCGTATGCCTAAGCCAACCATGGAAC-AAACGAGCAGGCGGGCACTACGCCGGC
11076780 CAGAAGGGCGGGATGCGTAACACGGGGATCCGCT
129 CAGAAGGGCGGGATGCGTAACACGGGGATCCGCT
* ** * *
11076814 GGGTCCCCCTCTACGTGCTGTCAATCTTGCTGCCGCAACCCTTGGTCCAATATGATCTTAGACTA
1 GGGTCCCCCTCTACATGCTACCAATCTTGCTGCCACAACCCTCGGTCCAATATGATCTTAGACTA
* * *
11076879 AGAATGAACTCCGTATGCCTAGGCCAACCGATGGAACAAACGGGCAGGCGGGCACTACGCTGGCC
66 AGAATGAACTCCGTATGCCTAAGCCAACC-ATGGAACAAACGAGCAGGCGGGCACTACGCCGGCC
11076944 AGA
130 AGA
11076947 GAGACGGATG
Statistics
Matches: 111, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
158 1 0.01
159 77 0.69
160 1 0.01
162 1 0.01
163 29 0.26
164 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (162 bp):
GGGTCCCCCTCTACATGCTACCAATCTTGCTGCCACAACCCTCGGTCCAATATGATCTTAGACTA
AGAATGAACTCCGTATGCCTAAGCCAACCATGGAACAAACGAGCAGGCGGGCACTACGCCGGCCA
GAAGGGCGGGATGCGTAACACGGGGATCCGCT
Found at i:11077609 original size:26 final size:26
Alignment explanation
Indices: 11077580--11077632 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11077570 CTGATCCGAT
*
11077580 CTTAGAC-TGGAAATGAACTCTGTATG
1 CTTAGACTTGG-AATGAACTCCGTATG
11077606 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
11077632 C
1 C
11077633 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:11078658 original size:26 final size:26
Alignment explanation
Indices: 11078629--11078681 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11078619 CTGATCCGAT
*
11078629 CTTAGAC-TGGAAATGAACTCTGTATG
1 CTTAGACTTGG-AATGAACTCCGTATG
11078655 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
11078681 C
1 C
11078682 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:11079700 original size:26 final size:26
Alignment explanation
Indices: 11079671--11079723 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11079661 CTGATCCGAT
11079671 CTTAGAC-TGGAAATGAACTCCGTATG
1 CTTAGACTTGG-AATGAACTCCGTATG
11079697 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
11079723 C
1 C
11079724 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:11081830 original size:26 final size:26
Alignment explanation
Indices: 11081801--11081853 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11081791 CCGGTCCGAT
11081801 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11081827 CTTAGACTGGGACTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11081853 C
1 C
11081854 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11082329 original size:903 final size:894
Alignment explanation
Indices: 11080028--11084417 Score: 5677
Period size: 903 Copynumber: 4.9 Consensus size: 894
11080018 CCGGTCCTAT
* * *
11080028 CTTAGACTGGGAATGAACTCCGTATGCC-AAGTCAACCCATGAAATC-AGCGTGCGGGAGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CGAGCGTGCGGGCGCTCAG
* * *
11080091 TCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTAC--G-T--G---C
65 CCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGATCGGGTCCCCCTCTACGTGCTACGATCC
* * * *
11080148 TG---CCACAACCCTCGGTCTGGTCCGATCTAAGACTGGGAATGAACTCTGTATGCGTAAGCCAC
129 TGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
11080210 CCGATGAAACGAGCGGACGAGAG-GGCCGACGGGTGGGCACTACGCCGGCCAGAGAGACGGGATG
194 CCGACGAAACAAGCGG--GAGAGCGG--G-C--GAGGGCACTACGCCGGCCAGAGAGACGGGATG
* *
11080274 CGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTTGCCAA
252 CGCAAGCCATGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-ATGCCAA
* * * *
11080339 TGCCCTTTTTATGGCTTGGAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTAATGGC
315 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
11080404 AGGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACCTTTTGCGGTTCGGGATTTTTTAAAAT
380 AAGACGACTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
*
11080469 TTTTTCGAAAGGAGTTTTGGTCCCAAAC-TTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGC
445 TTTTT-GAAA-GA-TTTTGGCCCCAAACTTTGG-AGACGTGATCCTTGTATTTTTTTTGGCATGC
11080533 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
506 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
11080598 CATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
571 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
11080663 TGCGAGTTCTTGAGGTTTGATGAGGGATTGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATC
636 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGCCAAGTACCAGCACCCATC
* * * * * *
11080728 ACACATCATTTGCGCACA-CCCCCCGG-CCCCCGGATCG-CAGTAACCCCAATGCCGCCGATCAG
700 GCACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGTCAG-AACCCCAATGCCACCGGTCAG
** * *
11080790 GTTCTCCGGTGATGCTACGACGATGGTGCCCC-GACGAAA-AAAAATGCGGCACCAGCACATGCC
764 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCAG-C-AAAGAAAAATGCGGCACCAGCACATGCC
* * * * * * *
11080853 CAAGCCCAACATGTTCTG-CTGCAACCCTCAGTCCGATCCGATTTTAGACTGGGAATGAACTCAA
827 CGAGCCCAGCATGTGCTGTC-GCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCA
*
11080917 TACG
891 TATG
*
11080921 CTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
11080986 CGACCAGAGGGGCGGGATGCACAAGTCGGGAATCGATCGGGTCCCCCTCTATGTGC-AGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGG-ATCGATCGGGTCCCCCTCTACGTGCTA--CGATC
* * * * *
11081050 TTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAA-CCA
128 CTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
11081114 ACTGACAAAACAAGCGGGTGGGAGGGTGGGCGGGCTGGCACTACGCCGGCCAGAGAGACGGGATG
193 ACCGACGAAACAAGC----GGGAGAGCGGGCGAG--GGCACTACGCCGGCCAGAGAGACGGGATG
* * *
11081179 CACAAGCCATTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
252 CGCAAGCCATGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-AATGCCAA
*
11081244 TGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
315 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * *
11081309 ATGACGACTCGTTTCCTATTTTTCAGGATTTTTGAAACTTTCTCCGGTTCGGGATTTTTCAAAAT
380 AAGACGACTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
* *** * *
11081374 TTTTTGGGAAGGAATTTTTATCCCAAACTTTGGAAATGTGATCCTTGTATTTTTTTTGGCATGCA
445 TTTTT--GAAAG-ATTTTGGCCCCAAACTTTGGAGACGTGATCCTTGTATTTTTTTTGGCATGCA
* *
11081439 CAAAAAAATTCAGCTATAAACTAGAAGTGTA-AAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
507 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
11081503 ATTTTAGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCT
572 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
11081568 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCAAGTAGCAGCACCCATCGC
637 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCAAGTACCAGCACCCATCGC
11081633 ACATCATGTGTGCACACCCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCACCGGTCAGGT
702 ACATCATGTGTGCACA-CCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCACCGGTCAGGT
11081698 TCTCCGACGATGCTCCGGCGATGGTGCCCCAGCAAAGAAAAATGCGGCACCAGCACATGCCCGAG
766 TCTCCGACGATGCTCCGGCGATGGTGCCCCAGCAAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * ** *
11081763 CCCTGCATGTGTTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
831 CCCAGCATGTGCTGTCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
11081827 CTTAGACTGGGACTGAACTCCGTATGCCTAAGTCAACCCATGAAATGACCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
11081892 CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGATCGGGCCCCCCTCTGCATGCTAGCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGATCGGGTCCCCCTCTACGTGCTA-CGATCC
** * * *
11081957 TATTACCGCAACCCTCGGTCTGATCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
129 TGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
11082022 CCGACGAAACAAGCGGGAGAGCGGGCGAGCCGGCATTACGTCGGGCAAAGAGACGGGATGCGCAA
194 CCGACGAAACAAGCGGGAGAGCGGGCGAG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * **
11082087 GCCGTGGATCGATAGAGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTAAGTGCCAATGAAA
257 GCCATGGATCGATAG-GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAA-TGCCAATGCCA
* * *
11082152 TTGTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
320 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
11082217 GACTCATTTTCTATTTTTCACGATTTTCGAAGCTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
385 GACTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* *
11082282 CAGAAAGATTTTGGGCCCCAAACTTTGCAGACGTGATCGTTGTATTTTTTTCTGGCATGCACAAA
450 --GAAAGATTTT-GGCCCCAAACTTTGGAGACGTGATCCTTGTATTTTTTT-TGGCATGCACAAA
11082347 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
511 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
11082412 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
576 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
11082477 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
641 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCACA
* * * ** *
11082542 TCATGTGCGCACA-CCCCCCGG-CCCCCCTATCGTCGGAACCTAAATGCCACCGATCAGGTTCTC
705 TCATGTGTGCACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCACCGGTCAGGTTCTC
* * *
11082605 CGACGATGCTCCGGTGATGGTGCCCTAGCAAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCA
770 CGACGATGCTCCGGCGATGGTGCCCCAGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
*
11082670 GTATGTGCTGTCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
835 GCATGTGCTGTCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
11082730 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCTCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * *
11082795 CGGCCATAGGGGCGGGATGCAAAAGCCGGGGATCGGTCGGGTCCCCTTCTGCGTGCTACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGATCGGGTCCCCCTCTACGTGCTAC-GATCC
* * *
11082860 TGCTACCACAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAA
129 TGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ***
11082925 CCGATGAAACATGCGGGCGAGCGGGC--GGGCACTACGTTAGCCAGAGAGACGGGATGCGCAAGC
194 CCGACGAAACAAGCGGGAGAGCGGGCGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
11082988 CATGGATCGATAGGATGGTAGGTGGGTTTAGGAACATCTTCATATTTTTAGGTGCCAATGCCATT
259 CATGGATCGATAGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-ATGCCAATGCCATT
*
11083053 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * **
11083118 CTCATTTTCTATTTTTTATGATTTTTGAAAGTTATTGCGGTTCAAGATTTTTTAAAATTTTTTTG
387 CTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTT-
* * * * * *
11083183 GAAGGTGTTTTGGCCCCAAAC-TTGGTAGACGTTATCCTTCTATTTTTTTTTGCATGCAAAAAAA
450 GAAAG-ATTTTGGCCCCAAACTTTGG-AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
*
11083247 AATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
513 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
11083312 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
578 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
11083377 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATC
643 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCACATC
* * * ** * **
11083442 ATGTGTGCACA-CCCCTCTGCCCCTCCGATCACCGGAACCCCAATGCCATTGGTCAGGTTCTCCG
707 ATGTGTGCACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCACCGGTCAGGTTCTCCG
** * * * * **
11083506 GTGATGCTCTGGCGATGGTGCCTCGGCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGC
772 ACGATGCTCCGGCGATGGTGCCCCAGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
11083571 ATTTACTGTTGCAACCCTCAATCCGGTTCGATCTTAGACTGGGAATGAACTCCATATG
837 ATGTGCTGTCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
*
11083629 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
11083694 TGGCCAGAGGAGCGGGATGCGCAAGCCGAGGATCGATCGGGT-CCCCTCTACGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGATCGGGTCCCCCTCTACGTGCTA-CGATCC
* * *
11083758 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
129 TGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
11083823 CCGAC-TAA-ATGAGTG-G-GC-AG-GAAGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGG
194 CCGACGAAACAAGCGGGAGAGCGGGCGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA-G
* * *
11083882 CCATCTG-TCGATTTTAGGTGGTAGGTGGGTTTTAGGCACATCTGGCAT-TTTCTGCATGCCCAA
258 CCAT-GGATCGA---TAGGTGGTAGGTGGG-TTTAGGCACATCT-TCATATTTCT-AATG-CCAA
11083945 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTTCACGTGAAGTTTCATGG
315 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CCTTCACGTGAAGTTTCATGG
* * * *
11084010 CATGACGACTCGTTTCCTA-TTTTCAGGATTTTTTGAAACTTTCTCCGGGTTC-GGATTTTTTCA
379 CAAGACGACTCGTTTTCTATTTTTCAGGA-TTTTTGAAACTTTTTGC-GGTTCGGGATTTTTT-A
* ** * * *
11084073 AAA-TTTTTGGAAGATTTTTACCCTAACACTTTGGAAATGTGATCCTTGTATTTTTTTTGG-ATG
441 AAATTTTTTGAAAGATTTTGGCCCCAA-ACTTTGGAGACGTGATCCTTGTATTTTTTTTGGCATG
* *
11084136 CACAAAAAAATTCAGCTATAAACTAGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCC
505 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
11084200 CCATTTTAGAACACTTTAATGGCTACAGGCAGCAAACCTGCTAAAATCTCAAATGCTCTTTAATG
570 CCATTTTAG-ACACTTTAATGGCTACTGGCAGCAAACCTG-TAAAATCTCAAATGCTCTTTAA-G
* * *
11084265 GGGGTG-GAGTTCTTGAGGTTTGATGAGGGGATAGGTGGCCAATATAGGGGGTGCCAAGTACCTA
632 GGGGTGTGAGTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAATATA---AG-GCCAAGTACC-A
* * *
11084329 CCACCCATCACACATCATGTGCG-ACAAGCCCCCCCGGGCCCCCCCGATCGTCAGAACCCCAATG
691 GCACCCATCGCACATCATGTGTGCAC-A-CCCCCCC-GGCCCCCCCGATCGTCAGAACCCCAATG
** * **
11084393 CCGTCGGTTAGGTTCTTTGACGATG
753 CCACCGGTCAGGTTCTCCGACGATG
11084418 GTGCCCCGGT
Statistics
Matches: 3081, Mismatches: 334, Indels: 151
0.86 0.09 0.04
Matches are distributed among these distances:
893 32 0.01
894 104 0.03
895 10 0.00
896 27 0.01
897 103 0.03
898 397 0.13
899 561 0.18
900 68 0.02
901 11 0.00
902 20 0.01
903 656 0.21
904 177 0.06
905 450 0.15
906 432 0.14
907 29 0.01
908 2 0.00
909 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGATCGGGTCCCCCTCTACGTGCTACGATCCTG
CTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACAAGCGGGAGAGCGGGCGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
TGGATCGATAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGAAAGA
TTTTGGCCCCAAACTTTGGAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCA
CACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTC
CGGCGATGGTGCCCCAGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGT
CGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:11082740 original size:26 final size:26
Alignment explanation
Indices: 11082704--11082756 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11082694 CCGGTCCGAT
11082704 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11082730 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11082756 C
1 C
11082757 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11083639 original size:26 final size:26
Alignment explanation
Indices: 11083603--11083655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11083593 CCGGTTCGAT
11083603 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11083629 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11083655 C
1 C
11083656 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11086823 original size:26 final size:26
Alignment explanation
Indices: 11086787--11086839 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11086777 CTGATCTGAT
*
11086787 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11086813 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11086839 C
1 C
11086840 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11088597 original size:26 final size:26
Alignment explanation
Indices: 11088567--11088618 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11088557 CGATCAGATA
*
11088567 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
*
11088593 TTAGACTAGGAATGAACTCCTTATGC
1 TTAGACTAGGAATGAACTCCATATGC
11088619 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:11090372 original size:26 final size:26
Alignment explanation
Indices: 11090330--11090385 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
11090320 CTAGTCTGAT
*
11090330 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11090356 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11090382 CTTA
1 CTTA
11090386 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11092121 original size:26 final size:26
Alignment explanation
Indices: 11092085--11092137 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11092075 CTGGTCTGAT
11092085 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11092111 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11092137 C
1 C
11092138 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11092321 original size:26 final size:26
Alignment explanation
Indices: 11092271--11092321 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11092261 AGTCCGATCT
*
11092271 TAGACTGGGAATCAACTCCGTATGCA
1 TAGACTGGGAATCAACTCCGCATGCA
* *
11092297 TAGACTGGGAATGAACTCTGCATGC
1 TAGACTGGGAATCAACTCCGCATGC
11092322 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATCAACTCCGCATGCA
Found at i:11093033 original size:26 final size:26
Alignment explanation
Indices: 11092997--11093078 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
11092987 CCGGTCCGAT
**
11092997 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCGTATG
11093023 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11093049 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11093075 CTTA
1 CTTA
11093079 AGTCAACCCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11094858 original size:26 final size:26
Alignment explanation
Indices: 11094829--11094884 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
11094819 CCGGTCTGAT
* *
11094829 CTTAGATTGAGAATTAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
11094855 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
11094881 CTTA
1 CTTA
11094885 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:11095768 original size:26 final size:26
Alignment explanation
Indices: 11095732--11095784 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11095722 CCAGTCTGAT
11095732 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
11095758 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
11095784 C
1 C
11095785 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:11096485 original size:898 final size:892
Alignment explanation
Indices: 11093475--11097909 Score: 5148
Period size: 886 Copynumber: 5.0 Consensus size: 892
11093465 TTCACGTGAG
* *
11093475 GTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTCTG-GATTATTTAAAATTTTTTCGG
1 GTTTTCTATTTTTCACGATTTTTGAAAA-TTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGG
* * *
11093538 AAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACGAAAAAA
64 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
11093603 TTCAACTAAAAGCTT-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAG
129 TTCAGCTAAAA-ATTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
11093667 ACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTT
193 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* ** *
11093732 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGATCAAGTACCAGCACCCATCTCACATCA
258 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
11093797 TGTGCGCACACCCCCCCGGCCCCTCCGATCGTCGAAACCCCA---AT--GT---GTC-CGACGAT
323 TGTGCGCACA-CCCCCCGGCCCC-CCGATCGTCGAAACCCCATGCATCGGTCAGGTCTCGACGAT
* * * **
11093853 GCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCATGAGCCCAGCATGTG
386 GCTCCGGCGATAGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG
* * *
11093918 CTGCCGCAA-CCTTGGTCCTGTCTGATCTTAGAC-GAGGAATGAACTCCGTACGCTTAGACTGGG
451 CTG-CGCAACCCTCGGTCCAGTCTGATCTTAGACTG-GGAATGAACTCCGTATGCTTAGACTGGG
* * * ** * *
11093981 AATGAACTCTGTATCCCTAAGTCAACCCACAAAACGAGTGTGCAGGCGCTCAGCCGGCCAGAGGG
514 AATGAACTCCGTATGCCTAAGTCAACCCAGAAAA--AGCATGCGGGTGCTCAGCCGGCCAGAGGG
* *
11094046 GCGGGATGCGCAAGCCGGGGATCGGT-GGGTCCCCCTCTACGTGCTA-CCGATCCTGCTACCGCA
577 GCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGC-AGCCGATCCTGCTGCCGCA
* * * * *
11094109 ACCCTCGGTCGGGTCTGATCTTAGAATGGCAATGAAATCCGTATGCCTAAGCCAACCGACAAAAC
641 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * * * * * *
11094174 AAGTGGGCGGGCAGGCGGGTGGGCACTACGTCGGCCAGAGACACGGGATGCGCAAGCCATGGATT
706 -A--GAGCGGACGGGCGGGAGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * **
11094239 GATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATCAC
768 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
*
11094304 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTC
833 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
11094364 GTTTTCTATTTTTCACGA-TTTTCAAAAATTTTACGGTTCGGGATTTTTTAAAATTGTTTCGAAA
1 GTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * * * * *
11094428 GGAGTTTTGACCCCAAACATGGTAGACATGATCCTTGTATTTTTCTTGGCATGCCCAAAAAATTT
66 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
11094493 CAGCTAAAAACTCA-AA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
131 CAGCTAAAAA-TTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
11094556 ACTTTAATGGCTGCTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCC
195 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * * *
11094621 CGAGGTTTGATGATGG-TA-GGGGCAAATATAAAGCCCAAGTACCAGCACCAATCGCACATCATG
260 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
11094684 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAAA-CCCA---AT--GT---GTC-CGACGATGC
325 TGCGCACACCCCCCGG-CCCCCCGATCGTC-GAAACCCCATGCATCGGTCAGGTCTCGACGATGC
* * * * * * *
11094739 TCCGGTGATAGTGCCTCGACGAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTACT
388 TCCGGCGATAGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT
* * * * *
11094804 GCCGCAACCCTCGATCCGGTCTGATCTTAGATTGAGAATTAACTCCGTATGCTTAGACTGGGAAT
453 G-CGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
11094869 GAACTCCGTATGCTTAAGTCAACCCAGGAAACGAGCATGCGTGCGCTCAGCCGGCCAGAGGGGCA
517 GAACTCCGTATGCCTAAGTCAACCCA-GAAA-AAGCATGCGGGTGCTCAGCCGGCCAGAGGGGCG
** ** * * * * *
11094934 GGATATGCAAGCC-AGGGATCGACCGGGTGCCCCTCTGCATGCTA-CCGATCCTGCTACCGTAAC
580 GGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTACGTGC-AGCCGATCCTGCTGCCGCAAC
* ** * *
11094997 CCTTGGTATGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGA
643 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A
* * *
11095062 GCAGGCGGACGGGCGGGCGGGCACTATGCCAGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGA
707 G-A-GCGGACGGGCGGGAGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
11095127 TAGGGCGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
770 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
11095192 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAAGTTTCATGGCAAGACGACTC
835 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AAGTTTCATGGCAAGACGACTC
* * * * *
11095251 GTTTTCTATTTTTTACGATTTGTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAT
1 GTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * * * *
11095316 GGCA-TTTTTGTCCCAAACTTGGTAGATGTTATCCCTGTATTTTTGTTGGCATGCACAAAAAAAT
66 GG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * * **
11095380 TCAGCAAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTGGAC
130 TCAGCTAAAAATTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
11095445 ACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGAGTGAGTTCT
195 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * **
11095510 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCAGCAATCATACATCATG
260 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
11095575 TGCGCACACCCCCCAGCCCCCCGATCATCGAAACCCCAATGCCATCGGTCAGGTTCTCTGGCGAT
325 TGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCC-ATG-CATCGGTCAGG-TCTC-GACGAT
11095640 GCTCCGGCGATAGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG
386 GCTCCGGCGATAGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG
* *
11095705 CTGTCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGA
451 CTG-CGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
** * *
11095770 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCATATGGGTGCTCAACTGGCCAGAGGGG
515 ATGAACTCCGTATGCCTAAGTCAACCCA-GAAA-AAGCATGCGGGTGCTCAGCCGGCCAGAGGGG
* * * * * * *
11095835 CGGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCAT-TATGTGCAGCTGATCCTGTTGTCGTAA
578 CGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCC-TCTACGTGCAGCCGATCCTGCTGCCGCAA
* * * * *
11095899 CCCTTGGTCCGGTCTGATCTTAGACTGGGACTGAACTCCGTATACATCAGCCAACCGACGAAAC-
642 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACA
* * * *
11095963 GAGCGGACGGGTGGGAGGGCACAATGCTGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATA
707 GAGCGGACGGGCGGGAGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * **
11096028 GGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGTGTGCCAATGCCATTTTTATGAATTGT
772 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
* *
11096093 AAATTCATACAATGGTCCGTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
837 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
11096149 GTTTTTTATTTTTCATGATTTTTGAAAATTTTTACGGTTCGAGTTTTTTTAAAATTTTTTCGGAA
1 GTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * *
11096214 GGAGGTTTGGCCCCAAACTT-TTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATT
66 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * **
11096278 TAGCTAAAAATTAGAAGTGTACGAGATTTTGTGACCATTCAAAAAAAAGTGTCCCCATTTCAGAC
131 CAGCTAAAAATTAGAAGTGTACAAGATTTTGTGACCATT-TGAAAAAAGTGTCCCCATTTCAGAC
* * * *
11096343 ACTTTAATGCCTACTGGTAGCGAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCT
195 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
11096408 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATG
260 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* **
11096473 TGCGCGCACCCCCCCCGGCCTCCCCGATCGTCGGTACCCCAATGC-TGCCGGTCAGGATCTCCGA
325 T--GCGCACACCCCCCGGCC-CCCCGATCGTCGAAACCCC-ATGCAT--CGGTCAGG-TCT-CGA
* * * * *
11096537 TGATGCTCCAGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAACACATGCCCGAGTCCAGCA
382 CGATGCTCCGGCGATAGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
*
11096602 TGTGCTG-G-------C-G--CA---TG--CTTAGACTGGGAATGAACTCCGTATGCCTA-A---
447 TGTGCTGCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
11096647 -G--TCAAC-CC--A---C---G-GAA--C-G---AA-CGTACGGGTGCTCAGCAGGCCAGAGGG
512 GGAATGAACTCCGTATGCCTAAGTCAACCCAGAAAAAGCATGCGGGTGCTCAGCCGGCCAGAGGG
* * * * * * * *
11096692 GTGGGATGTGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTGTCGCAA
577 GCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCAGCCGATCCTGCTGCCGCAA
* * * * * * * * *
11096757 CCCTCAGTCCAGTTTGATATTAGACTAGGAATGAACTCCCTACGCCTCAGCCAACCGACTAAAC-
642 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACA
* * *
11096821 GTGCGGGA-GGGCAGGCTGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
707 GAGC-GGACGGGC--G--GGAGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
11096885 CGTTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCGTGCCAATGCCATTTTTATGG
767 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* * *
11096950 CTTGTAAATTCATACAA-CGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTC
832 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
11097010 GTTTT-TATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCAGA
1 GTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGA
** * *
11097073 AGGAGTTTTGGCATCAAACTTGGTAGAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
65 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * * *
11097138 TCAACTAAAAACTCA-AAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCTATTTTAGA
130 TCAGCTAAAAA-TTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
11097202 CACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
194 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
11097267 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCA-CTGCACATCT
259 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCA
** * * * *
11097330 TGTGCAAACACCCCCTCGGCCCCCCCGATCGCCG-AACCTCGATGCCGTCGATCAGGT-T---C-
323 TGTGCGCACACCCCC-CGG-CCCCCCGATCGTCGAAACC-CCATG-CATCGGTCAGGTCTCGACG
* * * * * *
11097389 -T-CT--GGCG--A-TGCTCTGGCGAAGAAAAATACGGCACCAACACATACCCGAGCCTAGCATG
384 ATGCTCCGGCGATAGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* * **
11097447 TGCTGCTGCAACCCCCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
449 TGCTGC-GCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * ** *
11097512 GAATGAACTCCGTATGCCTAAGTTAACCCATGAAACAAACATGCGGGTGCTCAGCCAACTAGAGG
513 GAATGAACTCCGTATGCCTAAGTCAACCCA-GAAA-AAGCATGCGGGTGCTCAGCCGGCCAGAGG
* * * * * * *
11097577 GACAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTACGTGCTGCTGATCTTGCTG-CGCA
576 GGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCAGCCGATCCTGCTGCCGCA
* * *
11097641 ACACTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
641 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * *
11097706 AAGTAGGCGGGCGGGCGGGCA-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGAT
706 -AG-A-GCGGACGGGCGGG-AGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
11097770 CGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
767 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* * * *
11097835 CTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAACAAGACTC
832 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
*
11097896 ATTTTCTATTTTTC
1 GTTTTCTATTTTTC
11097910 GGATGGATTT
Statistics
Matches: 3043, Mismatches: 392, Indels: 224
0.83 0.11 0.06
Matches are distributed among these distances:
843 49 0.02
845 1 0.00
846 3 0.00
848 2 0.00
849 1 0.00
852 1 0.00
855 1 0.00
856 1 0.00
857 23 0.01
858 150 0.05
859 34 0.01
860 216 0.07
861 115 0.04
862 120 0.04
863 1 0.00
865 2 0.00
867 6 0.00
868 3 0.00
870 1 0.00
871 1 0.00
873 1 0.00
874 1 0.00
876 3 0.00
877 6 0.00
879 2 0.00
881 1 0.00
883 1 0.00
884 132 0.04
885 352 0.12
886 353 0.12
887 169 0.06
888 201 0.07
889 156 0.05
890 17 0.01
891 55 0.02
892 1 0.00
895 2 0.00
897 76 0.02
898 234 0.08
899 148 0.05
900 18 0.01
901 102 0.03
902 3 0.00
903 276 0.09
904 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
GTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAATTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCATGCATCGGTCAGGTCTCGACGATGCTCC
GGCGATAGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCG
CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCAGAAAAAGCATGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGC
GCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCAGCCGATCCTGCTGCCGCAACCCTCGGTC
CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGCGGACG
GGCGGGAGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
Found at i:11097512 original size:26 final size:26
Alignment explanation
Indices: 11097476--11097528 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11097466 CTGGTCTGAT
11097476 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11097502 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11097528 C
1 C
11097529 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11098150 original size:263 final size:264
Alignment explanation
Indices: 11097665--11098150 Score: 767
Period size: 263 Copynumber: 1.8 Consensus size: 264
11097655 CTGATCTTAG
** **
11097665 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTAGGCGGGCGGGCGGGCAGGC
1 ACTGGGAATGAACTCCG-ATGCCTAAGCCAACCGACGAAACAAACAGGCGGGCGAACGGGCAGGC
*
11097730 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAAGGTGGTAGGTGGGTTTAGG
65 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGG
*
11097795 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCT
130 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
11097860 TAAGCCTTCACGTGGAGTTTCATGGCAACAAGACTCATTTTCTATTTTTCGGATGGATTTTTGGC
195 TAAGCCTTCACGTGAAGTTTCATGGCAACAAGACTCATTTTCTATTTTTCGGATGGATTTTTGGC
11097925 CCCAA
260 CCCAA
* * * * **
11097930 ACTGGGAATGAACTTC-ATGCCTAAGCCAACCGACGAAACAAACGGGGGGGCGAATGGGTGGGCA
1 ACTGGGAATGAACTCCGATGCCTAAGCCAACCGACGAAACAAACAGGCGGGCGAACGGGCAGGCA
* * *
11097994 CTACGCCGGCCAGAGAGATGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGC
* ** * *
11098059 ACGTCTTCATATTTCTGGGTGTCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTT
131 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
11098124 AAGCCTTCACGTGAAGTTTCATGGCAA
196 AAGCCTTCACGTGAAGTTTCATGGCAA
11098151 GACACTTGTT
Statistics
Matches: 200, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
263 185 0.93
265 15 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (264 bp):
ACTGGGAATGAACTCCGATGCCTAAGCCAACCGACGAAACAAACAGGCGGGCGAACGGGCAGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAACAAGACTCATTTTCTATTTTTCGGATGGATTTTTGGCC
CCAA
Found at i:11098670 original size:26 final size:26
Alignment explanation
Indices: 11098641--11098693 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11098631 CTGGTCCGAT
* *
11098641 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACACCGTATG
*
11098667 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
11098693 C
1 C
11098694 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:11099084 original size:26 final size:26
Alignment explanation
Indices: 11099055--11099107 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11099045 CCGATCCGAT
* *
11099055 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGAGAATGAACTCCGTATG
11099081 CTTAAACTGAGAATGAACTCCGTATG
1 CTTAAACTGAGAATGAACTCCGTATG
11099107 C
1 C
11099108 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGAGAATGAACTCCGTATG
Found at i:11099935 original size:26 final size:26
Alignment explanation
Indices: 11099884--11099936 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11099874 CCGATCAAAT
**
11099884 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCATATG
*
11099910 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
11099936 C
1 C
11099937 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:11102405 original size:26 final size:26
Alignment explanation
Indices: 11102369--11102421 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11102359 CCAGTTCGAT
11102369 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11102395 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11102421 C
1 C
11102422 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11102787 original size:903 final size:897
Alignment explanation
Indices: 11100370--11104220 Score: 5136
Period size: 903 Copynumber: 4.3 Consensus size: 897
11100360 TTTTCGGAGT
* *
11100370 GATAGGGGACCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCCC
1 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * * * * * *
11100435 GACCCCCCCGAT-CATCGGAACCCGATGCCGTTGGCCAGGTTCTCCGGTGATGCTCTGGCAATGG
66 GGCCCCCCCGATCCAT---AACCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGG
* * *
11100499 TGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
128 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
11100564 CGGTCCGGTCTGATGTTAGACTGGGAATGAACTTCGTATGCTTCGACTGAGAATGAACTCCGTAT
193 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
11100629 GCCTAAGTCAACCCACGAAACGAGCGTACGGGAGCTCAACCGACCAGAGGGGCAGGATGCGCAAG
258 GCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * ** * * *
11100694 CCAAGTATCGGTCGGGTCCCCCTCTGCCTGCTACTGATCCTACTGCCGCTACCCTCGGTTCGGTC
323 CCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCT-TGTTCGGTC
* * * *
11100759 TGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAATCGACG-AA--AC--GA-ACGGGTG
387 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGACAGGAGACGGGCG
* * **
11100818 GGCGGGCACTACGTCGGTCAGAGAGATGGGATGCATAAGCCGTGGATCGATAGGGTGGTAGGTGG
452 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
11100883 GTTTAGGCACATCTTCATATTTTTGCATACCAATACCATTTTTATGGCTTGTAAATTCATACAAT
517 GTTTAGGCACATCTTCATATTTCTGCATACCAATTCCATTTTTATGGCTTGTAAATTCATACAAT
*
11100948 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTT
582 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * *
11101013 CAAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACATGG
647 CAAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
11101078 TAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTAC
712 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
11101143 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATAGCTACTGGCAGCAA
776 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAA
* * *
11101208 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGG
841 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
11101265 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCC
1 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
** * * * * * *
11101330 -GATCACCGGA-AC-T---CCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGCGC
66 GGCCCCCCCGATCCATAACCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
* **
11101389 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTTGCAACCCTCGA
131 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-
* * * ** * *
11101454 TTCCGGTCTGATCTTAGACTAGGAAGGAACTTTGTAAGCTTGGACTGGGAATGAACTCCGTATGC
195 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
11101519 CTAAGTCAATCCACGAAACGAGCGTGCGGGCGCTCAGCGGGCTAGAAGGGCGGGATGCGCAAGCC
260 CTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
** * * * * ** * * **
11101584 AGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGTAACCCTCAATCCGATCCA
325 AGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCT-TGTTCGGTCTG
* * * * * * * *
11101649 ATCCTAGACTAGGAATGAACTCCGTATGCCTATGCCAACCGACGAAATGAGCGGGCGGGCGGACG
389 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-CAGG-AGACGGGCG
* *
11101714 GGCTGGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
452 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
11101779 GTTTAGGCACATCTTCATATTTCTGCATACCAATTCCATTTTTATGGCTTGTAAATTCATACAAT
517 GTTTAGGCACATCTTCATATTTCTGCATACCAATTCCATTTTTATGGCTTGTAAATTCATACAAT
*
11101844 GGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
582 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * *
11101909 TGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGG
647 CAAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
11101974 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACACAAAAATTCAGCTAAAAACTCGAAGTGTAC
712 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACA-AAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
11102039 AAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
776 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAA
* * *
11102104 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGAT-AAG
841 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
11102160 GATAGGGGGCCGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCC
1 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCC
* * *
11102225 CCGGCCCCCCCAATTCCATAACCACAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCAACGATG
64 CCGGCCCCCCCGA-TCCATAACC-CAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATG
** * * *** *
11102289 GTGCCCCGGTGAAGAAAAATGCAGCACCAGTACATGCCCGAGCCCCTAATGTGCTGCCACAACCC
127 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* *
11102354 TCGGTCCAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGT
192 TCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * **
11102418 ATGCCTAAGTTAACCCATGAAACAAGCGTACGGGCGCTCAGCCGGCCAGAGGGATGGGATGCGCA
256 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * ** * * *
11102483 AGTCGGGGATCGGTCGGGTCCATCTCTACATGCTGCCAATCGTGCTGCCGCAACCCTTGTTCCGG
321 AGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTTGTT-CGG
* *
11102548 TCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAACGAGCAGGCAGACG
385 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-CAGG-AGACG
* * * *
11102613 GGCGGGTGGGCACTACGTCGGCCA-ACGAGATGGGATGCGTAAGCCGTGGATCGGTAGGGTGGTA
448 GGCGGGCGGGCACTACGTCGGCCAGA-GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
11102677 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATTCCATTTTTATGGCTTGTAAATTCAT
512 GGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATTCCATTTTTATGGCTTGTAAATTCAT
* * *
11102742 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTGGTTTTTTATTTTTCACG
577 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
11102807 ATTTTCAAAACTTTTTGTGGTTCGAGA-TTTTTTAAGATTTTTTTGGAAGGAGTTTTGGCCCCAA
642 ATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTTAA-ATTTTTTCGGAAGGAGTTTTGGCCCCAA
*
11102871 ACTTGGTACACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAA
706 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAA
*
11102935 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
770 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGG
* *
11103000 CAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGAGAGTTCTCGAGGTTTGATGAGG
835 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
11103063 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
1 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
** * * * * *
11103128 GGCCCCCCCGATCGCCGGAACCCAAAGCCGCCGATTAGGTTCTCCAGCGATGCTCCGACGATGGT
66 GGCCCCCCCGAT--CCATAACCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGT
* * *
11103193 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAA----C
129 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
*
11103254 ---CC--T-TGATC-----C--GG--T---CT--G-AT-CTTAGACTAGGAATGAACTCCGTATG
194 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * ** * * *
11103297 TCTAAGTCAACCCACGAAAGGAGCGTGTGGGCGTTCAGCCGGCCAGAGGGGCGGGATGTGCAAGT
259 CCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
** * * *
11103362 TGGGGATCGGTCGGGTCCCTCTCTGTGTGCTGCCAATCTTGCTGCCGCAACCCTTGGTTCGGTCT
324 CAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTT-GTTCGGTCT
* * *
11103427 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGA-ACGAG-CGGGCGG
388 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGACAGGAGACGGGCGG
* * *
11103490 GCGGGCACTACGTCGGCCAAAGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGG
453 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * * * *
11103555 TGTAGGCACATCTTCATATTTCTGCGTGCGAATGCCATTTTTACGGCTTGTAAATTCATACAATG
518 TTTAGGCACATCTTCATATTTCTGCATACCAATTCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
11103620 GTCTCTTAAGCCTTCATGTGAAGTTTCATGGCGAGACGACTCGTTTTTTATTTTTCACGATTTTT
583 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* ** *
11103685 GAAACTTTTTTTGGTTCGAGAATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
648 AAAACTTTTTGCGGTTCG-GGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
*
11103750 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTAC
712 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTAC
11103815 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAA
776 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAA
*
11103880 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
841 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
11103937 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTTCC
1 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCC
* * ** * *
11104002 CGGCACCCTCGATCGCCGAACCCCAATGCCG-CTTGTCAGGTTCTCCGGTGATGCTCCGACGATG
65 CGGCCCCCCCGATC-CATAA-CCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGACGATG
* ** * * *
11104066 GTGCCCCGGCGAAGAAAAATTTGACACCA-AACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC
127 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * *
11104130 TCGGTCCGATCTGCTCTTAGACTGGGAATGAACTCTGTATGCCTAGACTGGGAATGAACTCCGTA
192 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * *
11104195 TACCTAAGCCAACCGACGAAACGAGC
257 TGCCTAAGTCAACCCACGAAACGAGC
11104221 ATGCAGATGG
Statistics
Matches: 2604, Mismatches: 286, Indels: 127
0.86 0.09 0.04
Matches are distributed among these distances:
872 202 0.08
873 58 0.02
874 261 0.10
875 75 0.03
876 182 0.07
877 5 0.00
878 2 0.00
880 2 0.00
881 2 0.00
883 2 0.00
884 4 0.00
885 2 0.00
887 97 0.04
888 198 0.08
889 3 0.00
891 3 0.00
892 5 0.00
893 4 0.00
894 7 0.00
895 123 0.05
896 421 0.16
897 7 0.00
898 7 0.00
899 2 0.00
900 45 0.02
901 30 0.01
902 244 0.09
903 518 0.20
904 86 0.03
905 7 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
GGCCCCCCCGATCCATAACCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCA
GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTTGTTCGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGACAGGAGACGGGCGGGCG
GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATACCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
ACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
Found at i:11104176 original size:26 final size:26
Alignment explanation
Indices: 11104147--11104200 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
11104137 GATCTGCTCT
* *
11104147 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATACC
11104173 TAGACTGGGAATGAACTCCGTATACC
1 TAGACTGGGAATGAACTCCGTATACC
11104199 TA
1 TA
11104201 AGCCAACCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATACC
Found at i:11104886 original size:26 final size:26
Alignment explanation
Indices: 11104857--11104909 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11104847 CCGGTCCGAT
*
11104857 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11104883 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11104909 C
1 C
11104910 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11104895 original size:712 final size:712
Alignment explanation
Indices: 11103531--11104938 Score: 2198
Period size: 712 Copynumber: 2.0 Consensus size: 712
11103521 GCGCAAGTCG
* *
11103531 TGGATCGATAGGGTGGTAGGTGGGTGTAGGCACATCTTCATATTTCTGCGTGCGAATGCCATTTT
1 TGGATCGATAGGGTGGTAGGTGGGTGTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* * *
11103596 TACGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCATGTGAAGTTTCATGGCGAGACGACT
66 TACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** *
11103661 CGTTTTTTATTTTTCACGATTTTTGAAACTTTTTTTGGTTCGAGAATTTTTTTAAATTTTTTCGG
131 CGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGAATTTTTTAAAATTTTTTCGG
**
11103726 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAA
196 AAAAAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAA
* * *
11103791 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
261 TTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
* * *
11103856 CACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
326 CACTTTAATAGCTACTAGCAGCAAACCTGTAAAATCACAAATGCACTTTAAGGGGGTGTGAGTTC
*
11103921 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
391 TCAAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
11103986 GTGCGCACACCCTTCCCGGCACCCTCGATCGCCGAACCCCAATGCCGCTTGTCAGGTTCTCCGGT
456 GTGCGCACACCC-TCCCGGCACCCCCGATCGCCGAACCCCAATGCCGCTGGTCAGGTTCTCCGGC
* *
11104051 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATTTGACACCAAACATGCCCGAGCCCAGCATG
520 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAAACATGCCCGAGCCCAGCATG
* * * * * *
11104116 TGCTGCCGTAACCCTCGGTCCGATCTGCTCTTAGACTGGGAATGAACTCTGTATGCCTAGACTGG
585 TGCTCCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGG
*
11104181 GAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCATGCAGATGGGCGGGCACTACGC
650 GAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATGCAGATGGGCGGGCACTACGC
*
11104244 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
1 TGGATCGATAGGGTGGTAGGTGGGTGTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
*
11104309 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
66 TACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
11104374 CGTTTTTTATTTTTCATGATTTTTGAACCTTTTTACGGTTCG-GGATTTTTTAAAATTTTTT-TG
131 CGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGAATTTTTTAAAATTTTTTCGG
* *
11104437 AAAAATGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGGATGCACAAAACA
196 AAAAA-GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACA
11104502 ATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
260 ATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* * * * *
11104567 ACATTTTAATGGCTACTAGCAGCAAACCTGTAAAATCACAAATGCAGTTTAGGGGGGTGTGTGTT
325 ACACTTTAATAGCTACTAGCAGCAAACCTGTAAAATCACAAATGCACTTTAAGGGGGTGTGAGTT
* *
11104632 CTCGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCC
390 CTCAAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
11104697 TGTGCGCACAGCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG-TCGGTCAGGTTCTCCG
455 TGTGCGCACACCCTCCCGGCACCCCCGATCG-CCGAACCCCAATGCCGCT-GGTCAGGTTCTCCG
* *
11104760 GCGATGCTCCG-CTGATGGTGCCCCGACGAAGAAAAATGTGGC-CTCAATACATGCCCGAGCCTA
518 GCGATGCTCCGAC-GATGGTGCCCCGACGAAGAAAAATGTGACAC-CAA-ACATGCCCGAGCCCA
* * * *
11104823 GCATTTGCTCCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGTATGAACTCCGTATGCTTAG
580 GCATGTGCTCCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAG
* * * *
11104888 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAG
645 ACTGGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATGCAG
11104939 GTACTCAGTC
Statistics
Matches: 632, Mismatches: 57, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
710 18 0.03
711 71 0.11
712 382 0.60
713 161 0.25
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (712 bp):
TGGATCGATAGGGTGGTAGGTGGGTGTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
TACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGAATTTTTTAAAATTTTTTCGG
AAAAAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAA
TTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
CACTTTAATAGCTACTAGCAGCAAACCTGTAAAATCACAAATGCACTTTAAGGGGGTGTGAGTTC
TCAAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCTCCCGGCACCCCCGATCGCCGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAAACATGCCCGAGCCCAGCATGT
GCTCCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGG
AATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATGCAGATGGGCGGGCACTACGC
Found at i:11105950 original size:26 final size:26
Alignment explanation
Indices: 11105921--11105973 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11105911 GTTGACTTAG
11105921 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11105947 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11105973 G
1 G
11105974 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11107181 original size:896 final size:897
Alignment explanation
Indices: 11105801--11115783 Score: 10112
Period size: 893 Copynumber: 11.0 Consensus size: 897
11105791 CTAGGAATGA
* * * * * * * * * *
11105801 ACCGAGGGTTGCGGTAGCAAGATTGGTAGCACGTAGAGAGGGACCC-ACCGATTCCCAGATTGCA
1 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * ** ** * *
11105865 CATCCTGCCCCAC-GGTTGGCAAAGCGCCCGTACGCTCGTTTCGTCGGTTGACTTAGGCATACGG
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
11105929 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGT
131 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGT
* * * * * *
11105993 TGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGATACCTCATTTTTCTTCACCGAGGCACCATC
195 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATC
* * * *
11106058 GCCGAAGCATCGTCGGAGAACCTGACCGGCGGTATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG
260 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
* ** *
11106123 TGTGCGCACATGATGTGCAATGGGTTTTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATC
325 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
11106188 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCC
390 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* ** * * *
11106253 ATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAACAGTCACAAAATTTTGTACACTACGAATTT
455 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
11106318 TTAGCTGAATTTTTTTATGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
520 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
11106383 AAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAAACGCAAAAAGTTTCAAAAATCATGAAAAAT
585 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAAT
*
11106448 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGT-TGAATTTAC
650 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
11106512 AAG-CACTAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCT
715 AAGCCA-TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
11106576 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGCCCGCTTACTCG
779 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC-TGCTCG
* * *
11106641 TTTCCTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAG
843 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
** * ** * *
11106696 ACTAAGTGTTGCAACAACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
1 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * *
11106761 CATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTAGGCGTA-TG
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
11106825 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGAATCGGACTGAGGGTT
131 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
* * * *
11106890 ACGGCAGCACATGCTAGGCTCGGGCAAGTGCTGGTGCCACA-TTTTCTTCGTCGGGGCACCATCG
196 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG
* * * * * * *
11106954 CCGGAGCATCGTCGGAGAACCAGACCGACGGCATTGGGGTTCTGGCAATCGGTGGGGTCGGGGGG
261 TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGG
* * *
11107019 TGTGCGAAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATC
325 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
11107084 AAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
390 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
11107149 ATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
455 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
11107214 TTAGTTGAATTTTTTTGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCA
520 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
11107279 AAAATCCTTCCGAATAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
585 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAAT
11107344 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
650 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
11107409 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
715 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
11107474 TCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCTGCCTGCCCGCCCGCCCGC
780 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-C--CC-GCCCGCCCG-CTGC
*
11107539 TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
840 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * *
11107597 ACTGAGGGTTGCGGCAGCAAGATCGACAACACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCG
1 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * *
11107662 TATCCCGCCCCTCTGCCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
11107727 AGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTT
131 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
* * *** *
11107792 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCAGGGCACCATCG
196 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG
* * *
11107857 TCGGAGCATCGCCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGTCGGGGGGT
261 TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGT
*
11107922 GTGCGCACATGATGTGCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
326 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
11107987 AACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCTAGTAGCCA
391 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
11108052 TTAAACTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
456 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
** **
11108117 TAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAATAAGTTTGGATCCA
521 TAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
11108182 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAA
585 AAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAA
*
11108247 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTA
649 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
11108312 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCT
714 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
11108377 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCTACCCGCCCGCCCATCCG
779 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-A-G--TGCCCGCCCGCCC-GCTG
* * * *
11108442 CTCGTTTCATCAGTTGGCTTAGGCATA-TGTGTTCATTCCCAGTCTAAGATCAGACCAG
839 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
*** * * * * * *
11108500 AAAAAGGGTTGCGGCAGCAGGATTGACAGCACGCAGAGGAGGACCTGACCGATCCCTGGGTTGCG
1 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * * *
11108565 CATCCTGCCCCTCTTGCCGGCTGAGCTCCCGCACGCTTGTTTTGTGGGCTGACTTAGGCATACGG
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * * **
11108630 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGAATT
131 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
* *
11108695 GCGGCAGCACATGCTGGGCTCGGGCACT-TGCTGGTGCCACATTTTTCTTCGTC-AGGCACCATC
196 GCGGCAGCACATGCTGGGCTCGGGCA-TGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATC
* * * * *
11108758 GTCGGAGCATCATCGAAGAACCTGACCGGTGGCATTGGGTTTTCGACGATCGGGGGGGCCGGGGG
260 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGG
* *
11108823 GTGTGTGCACATGATGTGCGATGGGTG-TGGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCA
324 GTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
11108887 TTAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCT-ACAGTAG
388 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
11108951 CCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATT
453 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
11109016 TTTTGGCTGAATTTTTTT-TGCATGCCAAAAAAAATACAAGGATCATGTCTACTAAGTTTGGGGC
518 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
11109080 CAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAA
583 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAA
* *
11109145 ATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTT
648 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
11109210 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAACATGTGCCTAAACCAACCTACCACCC
713 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
11109275 TATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTC
778 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CTGCTC
* * ** * *
11109340 GTTTCCTCGGTTGGCTTAGGCAAACAAAGTTCATTCCCAGTCTAAGATCGGATCAG
842 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * ** * * *
11109396 ACCGAAGGTTACGGCAGCAGGATCGATAGGATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCA
1 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * *
11109461 CATCCCACCCCTCTGGTCGGCTAAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
11109526 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT
131 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
* * * * ** *
11109591 ACGACAGCACATGCTGGGCACGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCG
196 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG
* * * * *
11109656 CCGGAGCATCGTCGAAGAACCTGATCGGCGGCATTGGGGTTTCGACGATTAGGGGGGCCGGGGGG
261 TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGG
* * * **
11109721 TGTGCGCATATGATGTGTGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTTGTC
325 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
11109786 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGC
390 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
11109851 ATTAAAGTGAT-TGAAATGAGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTT
455 ATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
11109915 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAC
519 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
11109980 AAAACTCCTTCCGAAAATATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
584 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAA
* *
11110045 TAAAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
649 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** * * *
11110110 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCTATCTACCACCTT
714 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
11110175 ATCGATCTACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGACCTCCCG-T--TCGT
779 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTGCTCGT
* * * *
11110237 TTCGTCGGTTGGCATAGGCATAC-G-GTTCATTCCCAATCTAAGATCGGATCAG
844 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * *
11110289 ACCGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAAGGGGACCTGACCGATCCCCGGCTTACG
1 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * * * *
11110354 CATCTCGCCCCTCTGACCGGCAGAGCACCCGTATGCTCGTTCCGTGGGTTGACTTAGGCATACGG
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
11110419 AGTTCATTCCCAGTCTAAG-ATA--G-G---A---CC-G-----GAT----------CGAGGGTT
131 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
** * * * * * * *
11110458 ATGGTAGAACATACTGGGCTCAGGCATGTGTTGGTGCCGATATTTTTTTTCGA-CGGGGCACCA-
196 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-ACATTTTTCTTC-ATCGGGGCACCAT
* * * * * *
11110521 --T-----CA-C--CGGAGAACCTGACTGGCGGTATT-AGTTTTCGACGATCGAGGGGGTCGAGG
259 CGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCG-GG
*
11110575 GGGTCTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
322 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
11110640 ATCAAACCTCGAGAACTAACACTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
387 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
11110705 GCCATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
452 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
11110770 TTTTTAGCTAAATGTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAATTTTGGGG
517 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* *
11110835 CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCGTGAAA
582 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAA
* *
11110900 AATAGAAAACGAGTCGTCTTACCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
647 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
***
11110965 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
712 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
11111030 CTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCTGACGTAGTACCCGCCCGCCCGCCCGCT
777 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCT
* * * * * *
11111095 CACTCATTTCGTCGGTTGGCTTAGGTATACGGAGTTGATTCCTAGTCTAAGATCAGACCGG
838 -GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * * * **
11111156 ACCGAGAGTTGTGGCAGTAGGATTGGTAGCACGTAGAGGGGGACCTGGCCGATCCCCGGCTCACG
1 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * * * * * * * *
11111221 TATCCCGTCTCTCTAGCCAGCATAGTGCTCGCCAGCCTGTCTGCCCGCTCGTTTTGTCGGCTGGC
66 CATCCCGCCCCTCT-G---GC--CG-GCT-G--AG-C-GCCCGCACGCTCGTTTCGTGGGTTGAC
** * *
11111286 TTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATTGGATCGGATCGAACGTTGCGACAG--TAAG
119 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-T--A-CGGA--GTTCATT-C-CCAGTCTAAG
* * * * * * * * ** ** ***
11111348 ATTG-GCAGCACGCAGAGGG-AGACCCGATCGATCCCCA-GCTTGCACATCCCGCCCCT-CTGGC
176 ATCGAACCGGAC-C-GAGGGTTG---CG-GC-A-GCACATGC-TGGGC-TCGGGCATGTGCTGG-
* ***** * * * * * **
11111409 CGACCGAGCACCCGGACGCTCATTACGGGGGTTGACTTAGGCATACGGAGTTCAT--TC--CCAA
230 TG-CC-A-CA-TTTTTC-TTCA-T-C-GGGG--CAC-CA-TCGT-CGGAG--CATCGTCGGAGAA
* * * * *** * * **** * * **
11111470 TCTAAGGATACGGAGTTCATTCTCAG-T-CTAAGATCAAACCGGACTGATGGT-TGCGGTAGCAC
280 CCT---GA-CCGGCG-GCATT-GGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGC----GCAC
* * * * * ** * **** *
11111532 AT-ACTG-G-GCTCGG-GCAT-GT-GTTGGTGCCATAT-TTTTCTTCGTCGGGGCACCGTCACCA
334 ATGA-TGTGCGATGGGTGC-TGGTACTTGG-CCCTTATATTGGC--C-CCCTATC-CC-TCATCA
* * ** ** ** * ** * * * ** *
11111590 GGGCATCGTCGGAGAACT-TGACCAACGGAATTG-GGGTTCCGGGGATCGGGGGTGCCGGGGGTT
391 ----AACCTC-GAGAACTCACACCCCCTTAA-AGAGCATT--TGAGAT-----TTTAC--AGGTT
* * **** * * ** * **
11111653 GTGC-GCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
441 -TGCTGC-CA-G-T-AGCCAT-TAAAGT-GT-C-T-G-----AAATGGGGACACT-T---TTTTC
**** ** * * * ** ** *
11111717 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-C---AGGTTGCTG-CCAGT
487 AAA--T-G-G---TCACAAAATCTTGTACA-C-TTCGAGTTTTTAGCTGAATTTTTTTGTGCA-T
** ** * * * ** * *
11111777 AGCCATTAAAGTGTTTGA-AATGGAGACACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACT
542 -GCCAACAAA---AAT-ACAA-GGA-TCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CT
** ** * **
11111838 T-CGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
593 TCCGA------A----AA---AATT-T---T----A-AAAAAT-C-TCGAAC-CG-C-AAAAAGT
* * **
11111902 TTGGGGACAAAACTCCTTCCGAAAATATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATC
631 TT--CG--AAAA-T-CAT--GAAAA-A-TAGAAAA------------------------------
*
11111967 ATGAAAAATAAAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
656 ---------------CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
***
11112032 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
706 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
11112097 GCCACCTTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCCCGTCTG
771 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCG-C--
*
11112162 TCCGCCCGCCAGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
829 -CCG--C-CC-G-CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
*
11112227 ATCAAACCAG
888 ATCAGACCAG
* * * *
11112237 -CCTGAGGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGTTCCCCGGCTTGT
1 ACC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* *
11112301 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACG
65 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
11112366 GAGTTCATTCACAGTCTAAG-AT-C-G-G---------A--C------C--A---GACCGAGGGT
130 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGT
* * * * *
11112405 TACGGTAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCATCGGGGCACAATC
195 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATC
* * * * ** *
11112470 GTTGGAGCATCGTCGGAGAACCTGATCGACGACATTGGGGTTCCGGTGATCAAGGGGGCCGGGGG
260 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGG
* * *
11112535 GTGTGCGCACATGATGTGCAATAGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCAT
324 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * *
11112600 CAAACCTCAAGAACTCACACCCCCTTAAAGAACATTTAAGATTTTACAAGTTTGCTGCCAGTAGC
389 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
11112665 CATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
454 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
11112730 TTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
519 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
11112795 AAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAA
584 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAA
* *
11112860 TAGAAAACGAGTCGTCTTACCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
649 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
11112925 CAAGCCATAAAAATGGAACTGGCATGCAGAAATGTGATGATGTGCCTAAACCCACCTACCACCCT
714 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** * * *
11112990 ATCGATACACGTTTTGCGCATCCCGTCTCTCTAGCC-AGTGTAGT-CCCGCCCG--CTC-GCTCG
779 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTGCTCG
* * * ** *
11113050 TTTCGTAGGTTGGCTTAGGCATATGGAGTTCTTTCCCAGTCTAAGATTGGACCGG
843 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * *
11113105 ACCGAGGGTTGCAGCAGCAAGATCGACAGCATGCAGAGGGGGACCC-ACCGATCCCCGACTTGCG
1 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * * * * * *
11113169 CATCCCACTCCTCTGGCCGGTTGAGCACACACATGCTCGTTTCATGGGCTGACTTAGGCATACGG
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * *
11113234 AGTTCATTCACAGTCCAAGCATACAGAGTTCATTCCCAGTCTAAGATC-AGATCGGACCGAGTGT
131 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGT
* * * * *
11113298 TGCGGCAGCACATGCTGGACTCGTGCATGTGTTGG-GCTCGCATTTTTCTTCGTCGGGGCACCAT
195 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-CACATTTTTCTTCATCGGGGCACCAT
* ** * ** *
11113362 CGTCAGAGCATCACCGGAGAACCTGATCGGCGGCATTACGGTTCCGACAATCGGGGGGCTCGGGG
259 CGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC-CGGGG
11113427 TGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
323 -GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
11113492 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTA
387 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
11113557 GCAATTAAAGTGTCAGAAATGAGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAG
452 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
11113622 TTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATAAAAAGATCACATCTACCAAGTTTGGGG
517 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * *
11113687 CCAAAACTCCTT-CGAAAAAATATAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTAAAA
582 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAA
11113751 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
647 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** * * *
11113816 TACAAGCCATAAAAATGGTGTTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCAAC
712 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* ** * *
11113881 CTATCGATCCACGACTTGCGCATCCCACCTCTCTGGCTGACGTAGTACCCGCCCG-CC-C-GCTC
777 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTGCTC
* * * *
11113943 GTTTCGTCGGTTGGCTTAGGTATACGGAGTTGATTCCTAGTCTAAGATCAGACCGG
842 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * *
11113999 ACCGAGAGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCA
1 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * *
11114064 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTAACTTAGGCATACGG
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** ** *
11114129 AGTTTGTTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
131 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
* ** * * *
11114194 GCGGCAGCACATTCCAGGCTCGGGCATGTGATGGTGCCGCATTTTTCTTCATCGGGGCAGCATCG
196 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG
*
11114259 TCGGAGCATCG-CTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGG
261 TCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
* * * *
11114323 TGTGCGCACATGATGTCCGGTGGTTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATC
325 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
11114388 AAATCTAC-AAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
390 AAACCT-CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
11114452 CATTAAAGTGTCTGAAAAGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTTGAAGT
454 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGT
* * *
11114516 TTTTAGCTGAATTTTTTTGTGCGTGCTAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
518 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
11114581 CAAAAATCAC-TCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATGAAA
583 CAAAACTC-CTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAA
* * * * *
11114645 AATAGAAAACGAGTTGTCTTACCATGAAATTTGACGTGAAGGATTAAGGGACCATTGTATGAATT
647 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* **
11114710 TACGAGTGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-C
712 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
11114774 CTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGCCGTCGTAGTGCCCGCCCGCCCATCCGCC
777 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C--CCG-C
* * ** *
11114839 TGCTCGTTTTGTCAGTTGGCTTAGGCATACAAAGTTC-TTTCC---CT--G-T--------
837 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
** *
11114885 --C------T-----A--A-GAT---CAG-AC-CAGAGGGGGACTTGACCGATCCCCGGCTTGTG
1 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
** *
11114929 CATGTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGG
66 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * *
11114994 AGTTCATTCACAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-AGACTGGATCGAGGGT
131 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGT
* *
11115058 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTT-TTCATTGGGGCACCATC
195 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATC
* * ** *
11115122 GTCAGAGCATCATCGGAGAACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG
260 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-C-----
* *
11115187 GGCGGGGGGTTTTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCACC-TATATTGGCCCCC
318 --CGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC-CCTTATATTGGCCCCC
*
11115251 TATCGCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
379 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
11115316 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTAC
444 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
11115381 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAGGGATCATGTCTACCAG
509 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
** * * *
11115446 GTTTGGTTCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAGAAAGTTTCAAAAA
574 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAA
* *
11115511 TC-TAGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
639 TCAT-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
** *
11115575 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCA
703 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
11115640 CCTACCACCCTATCCATCCATGGCTTGCGCATCCTGTCTCTCTGGTCGACGTAGTGCCCGCCCGC
768 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * * * * *
11115705 CCGTCCGTTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTATGATCGGACCG
833 CCG-CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
11115770 G
897 G
*
11115771 ACAGAGGGTTGCG
1 ACCGAGGGTTGCG
11115784 ATAGCACATA
Statistics
Matches: 7590, Mismatches: 1074, Indels: 846
0.80 0.11 0.09
Matches are distributed among these distances:
855 2 0.00
856 18 0.00
857 480 0.06
859 1 0.00
860 2 0.00
861 11 0.00
862 1 0.00
864 59 0.01
865 215 0.03
866 4 0.00
867 216 0.03
868 112 0.01
869 5 0.00
870 4 0.00
871 39 0.01
872 4 0.00
873 12 0.00
874 401 0.05
875 58 0.01
876 3 0.00
877 6 0.00
878 3 0.00
879 49 0.01
880 6 0.00
881 1 0.00
882 3 0.00
883 3 0.00
884 1 0.00
885 145 0.02
886 1 0.00
888 2 0.00
889 1 0.00
890 2 0.00
892 14 0.00
893 758 0.10
894 521 0.07
895 391 0.05
896 716 0.09
897 332 0.04
898 89 0.01
899 472 0.06
900 78 0.01
901 214 0.03
902 432 0.06
903 505 0.07
904 238 0.03
905 3 0.00
906 1 0.00
907 1 0.00
908 1 0.00
910 1 0.00
911 5 0.00
913 1 0.00
915 2 0.00
916 8 0.00
917 6 0.00
918 4 0.00
919 1 0.00
920 1 0.00
921 2 0.00
923 1 0.00
924 4 0.00
926 2 0.00
927 1 0.00
930 5 0.00
931 2 0.00
932 5 0.00
934 2 0.00
935 1 0.00
936 4 0.00
938 5 0.00
939 2 0.00
940 8 0.00
941 13 0.00
942 18 0.00
943 21 0.00
944 6 0.00
945 16 0.00
946 6 0.00
950 13 0.00
951 8 0.00
952 4 0.00
953 1 0.00
954 2 0.00
957 3 0.00
959 6 0.00
960 5 0.00
961 2 0.00
962 1 0.00
963 4 0.00
964 2 0.00
965 2 0.00
966 4 0.00
967 5 0.00
968 2 0.00
970 8 0.00
971 5 0.00
972 19 0.00
973 13 0.00
974 11 0.00
975 7 0.00
976 6 0.00
977 8 0.00
978 1 0.00
979 2 0.00
980 1 0.00
981 8 0.00
982 7 0.00
983 8 0.00
984 10 0.00
985 13 0.00
986 19 0.00
987 5 0.00
988 8 0.00
990 2 0.00
991 5 0.00
992 4 0.00
993 2 0.00
994 2 0.00
995 4 0.00
996 1 0.00
997 2 0.00
998 5 0.00
999 5 0.00
1001 4 0.00
1004 2 0.00
1005 1 0.00
1006 3 0.00
1007 7 0.00
1008 13 0.00
1012 6 0.00
1013 16 0.00
1014 6 0.00
1015 13 0.00
1016 31 0.00
1017 12 0.00
1018 13 0.00
1019 2 0.00
1020 6 0.00
1021 2 0.00
1022 4 0.00
1023 5 0.00
1024 51 0.01
1025 29 0.00
1026 18 0.00
1027 7 0.00
1028 7 0.00
1029 2 0.00
1030 21 0.00
1031 18 0.00
1032 8 0.00
1033 3 0.00
1034 9 0.00
1035 31 0.00
1036 30 0.00
1037 17 0.00
1038 21 0.00
1039 17 0.00
1040 8 0.00
1041 14 0.00
1042 15 0.00
1043 14 0.00
1044 25 0.00
1045 5 0.00
1046 1 0.00
1047 6 0.00
1048 2 0.00
1049 2 0.00
1050 3 0.00
1051 1 0.00
1052 1 0.00
1053 3 0.00
1054 1 0.00
1056 2 0.00
1057 5 0.00
1058 3 0.00
1059 3 0.00
1060 5 0.00
1063 1 0.00
1064 1 0.00
1068 1 0.00
1069 49 0.01
1070 1 0.00
1071 2 0.00
1073 160 0.02
1074 4 0.00
1075 2 0.00
1077 6 0.00
1079 1 0.00
1080 5 0.00
1081 112 0.01
1082 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG
TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
Found at i:11107755 original size:26 final size:26
Alignment explanation
Indices: 11107719--11107771 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11107709 GTTGACTTAG
*
11107719 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11107745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11107771 G
1 G
11107772 ATTGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11108658 original size:26 final size:26
Alignment explanation
Indices: 11108622--11108674 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11108612 GCTGACTTAG
11108622 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
11108648 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11108674 G
1 G
11108675 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11109554 original size:26 final size:26
Alignment explanation
Indices: 11109518--11109570 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11109508 GTTGACTTAG
11109518 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11109544 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11109570 G
1 G
11109571 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11111487 original size:26 final size:26
Alignment explanation
Indices: 11111451--11111501 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11111441 TGACTTAGGC
11111451 ATACGGAGTTCATTCCCAATCTAAGG
1 ATACGGAGTTCATTCCCAATCTAAGG
* *
11111477 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
11111502 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGG
Found at i:11117411 original size:26 final size:26
Alignment explanation
Indices: 11117382--11117434 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11117372 GTTGACTTAG
11117382 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11117408 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11117434 G
1 G
11117435 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11117943 original size:887 final size:887
Alignment explanation
Indices: 11116134--11120568 Score: 5410
Period size: 872 Copynumber: 5.0 Consensus size: 887
11116124 ACAAAAATGG
** * * *
11116134 CATGAAACTTCACATCAAGGCATAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
11116199 GGCACATAGAAATATGAAGATGTGCCAAAACCCACCTACCACCTTATTGATCCACGGCTTGAGCA
66 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * **
11116264 TCCCATCTCTCTGGCCGACATAGTGCCCACCCGCCCACCTGCCCGTTCATTTCGTCGACTGGCTT
131 TCCCGTCTCTTTGGCCGACGTAGTG--C-CCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTT
* * * * ** *
11116329 AGGCAGA-TGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAACAGCAGGATCGA
189 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GAACTAAGGGTTGCGGCAGCAAGATCGA
* * * *
11116393 TC-TCA--CAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAG
253 -CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
11116455 CACCTGCACACTCGTTTCATGGGTTGACTTAGGCAGACGGAGTTCATTCCCAATCTAAGCATACG
317 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
11116520 GAGTTCATTCCCAGT-TAAGATTGAACCAGATCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGC
382 GAGTTCATTCCCAGTCTAAGA-TGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
11116584 ATGTGCTGGTGCCACATTTTTTTTCGTC-GGGCACCATCG-CCAGAGCATCG-CTGGAGAACCTG
445 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGA-AGCATCGTC-GGAGAACCTG
* * *
11116646 ACCAGCGGCATTGGGGTTCCGTCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTACTATG
508 ---A-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
11116711 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
568 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
11116776 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATGGGGA
633 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
11116841 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCAT
698 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
11116906 GCCAACAAAAATACAAGGATCCCATTTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
763 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTCT
** * *
11116971 AAAAAATCCCAAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
827 AAAAAATCCTGAACCGCAAAAAG-TTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
11117033 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
11117098 TGCACATAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCAATCCATGGCTTGCGAA
66 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
** * *
11117163 TCCTATCTCTTTGGCCGACGTAGTG-CCCGCCCGCCCGCTCGTTTCGTCGGTTTGCTTAGGTATA
131 TCCCGTCTCTTTGGCCGACGTAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** *
11117227 CGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTAACAGTTACGGCAGCAAGATCGACAGCAAC
196 CGGAGTTCATTCCCAGTCTAAGATCAGA-CGAACTAAGGGTTGCGGCAGCAAGATCGACAGC-AC
* * * *
11117292 GTAGAGGGGGAACCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCAGCTTG-GCGCCCG
259 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC-TGAGCGCCCG
* * *
11117356 GACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
323 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * *
11117421 ATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACGTGCTAGGCTTGAGCATGTGC
388 ATTCCCAGTCTAAGAT-GGAC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
** *
11117486 TGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCG-CTGGAGAACCTGACGGTAT
451 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTC-GGAGAACCTGACGGCAT
* * * * *
11117550 TGGTGTTCCGATGATC-GGCGGGCC-GGGGGTGTGTGCACATGATGTGCCATGGGTGCTGGTACT
515 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
11117613 TGGCCC-TATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCAT
580 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
11117677 TTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAA
645 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
11117741 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAA-TTTTTTGTGCATGCTAACAAAAAT
710 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
11117805 AAAACGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCCCGA
775 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTCTAAAAAATCCTGA
* * *
11117870 ACCGTAAAAAGGTTTGGAAATCGTGAAAAATAGAAAACGGGTCGTCTTGC
839 ACCGCAAAAA-GTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
11117920 CATGAAACTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * * * *
11117985 GGCACGCAGAAATAAGAAGATGTGCCTAAACCTAGCTACCACCCTATCGATCCACGGCTTGCACA
66 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
11118050 ACCCGTCTCTTTGGCTGGCATAGTGCCCGCCCACCCGCCCACCCGCTCGTTTCATCGGTTGGCTT
131 TCCCGTCTCTTTGGCCGACGTAGT----G--C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * * * *
11118115 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGA-TGGAGGGTTGTGGCAGTAGGATCG
189 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGA-ACT-AAGGGTTGCGGCAGCAAGATCG
* * * * *
11118179 GCAGTACGCAGAGGGGGACCCAGACGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
252 ACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
11118244 CGCCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACG
317 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
11118309 GAGTTCATTCCCAGTCTAAGATTGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
382 GAGTTCATTCCCAGTCTAAGATGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
11118374 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCATCG-CCAGAGCATCGTCGGAGAACCTGAA
446 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGA-AGCATCGTCGGAGAACCT---
* ** *
11118438 CGACGGCATTGGGGTTCCGACGATCAGACGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
507 -GACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
11118503 TGCTGGTACTTGGCACTTATATTGGCCCCTTATCCCTCATCAAACCTCGGGAACTCACACCCCCT
570 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
11118568 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
635 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
11118633 CTTTATTC-AATCGGTCACATAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATG
700 CTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
11118697 CCAACAAAAACACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTCTA
764 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTCTA
* * *
11118762 AAAAATCCTAAACCGCAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTTGC
828 AAAAATCCTGAACCGCAAAAAGTTTGAAAA-TCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
11118823 CATGAAACTTCAAGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
11118888 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCAATCCACGGCTTGCGCA
66 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
11118953 TCTCGTCTCTCTAGACGACGTAGTGATCGACCACACC-CCCGCTCGTTTCGTCGGTTGGCTTAGG
131 TCCCGTCTCTTTGGCCGACGTAGTG--C-CCCGC-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
11119017 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAAAC-GAGGGTTGCGGTAGC-AGCATC-AG
192 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-C-GAACTAAGGGTTGCGGCAGCAAG-ATCGA-
** * * * *
11119079 CAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGCTGTGC
253 CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
** *** *
11119144 GTGCGTTTGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T---C-TA--G
318 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
11119201 -G---A-T--C-G-----GAT--A-GGACCGAGTGTTGCGACAGCACATGCTGGGCTCGGGCATG
383 AGTTCATTCCCAGTCTAAGATGGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
11119250 TGTTGGTGCCACATTTTTCTTCATAGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTGACTGA
448 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGAC-G-
*
11119315 CGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCT
511 -G-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
11119380 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA-GCACACCCCCTTAAA
574 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
11119444 GAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTT
639 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
11119509 TTTCAAATGGTAACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGCGCATGCCGAA
704 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AA
*
11119574 -AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTCTAAAAA
768 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTCTAAAAA
* ** *
11119638 ATCCTGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCATCTTGC
832 ATCCTGAACCGCAAAAAGTTT-GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
11119695 AATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATT
1 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*** *
11119760 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACCACCCTATCGATCCACGACTTGGCG
66 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTT-GCG
* *
11119825 CATCCCGTCTCTTCTGGCTCGACGTAGTGCCTGCCGCCCGTCCTGTCCGTTCGTTTCATCGGTTG
129 CATCCCGTCTCTT-TGGC-CGACGTAGTGCC--CCGCCCG--C---CCGCTCGTTTCGTCGGTTG
* * * * * * * *
11119890 G-TTAGGGATACGGAGTTGCGTTCCCATTAACTAAGAACAGATTGGACCT-AGGGTTGTGACAGC
185 GCTTAGGCATACGGAGTT-CATTCCCAGT--CTAAGATCAGA--CGAACTAAGGGTTGCGGCAGC
* * * * ** *
11119953 AGAGATCGGCAGC-CGGCATGAGTGGGACCCGGCCTTATCCTCGGGCTTGCGCAT-CCTACCCTT
245 A-AGATCGACAGCAC-GCA-GAGGGGGACCCGGCC-GATCC-CCGGCTTGCGCATCCCGCCCCTC
** * * * *
11120016 TGG-CGGCTGAGCAACCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCTCAG
305 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * *
11120080 TCTAAGCATACGAAGTTCATTCCCCGTCTAAGATCGGACCGACCGAAGGTTGCGGCAGCACAAGC
370 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-GGACAGACCGAGGGTTGCGGCAGCACATGC
* * * * * *
11120145 TGGGCTTGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTAGGAGCATCATCG
434 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCG
* * *
11120210 AAGAACCTGACCGACGACATTAGGGTTCCGACGA-C-GGGGGGCCGGGGGGTGTGTGCACATGAT
499 GAGAACCTGA-CG--G-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* *
11120273 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACTTC-AGAACT
560 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
11120337 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCG
625 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-G
* *
11120401 AAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTTAGCTGAATTC
689 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTT
* * *
11120466 TTTTGTACATACCAAC-AAAATAAAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTTCG
753 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCG
*
11120529 AAAAAATTCTAAAAAATCCTGAACCGCAAAAA-TTTCAAAA
817 AAAAAATTCTAAAAAATCCTGAACCGCAAAAAGTTTGAAAA
11120569 ATTNNNNNNN
Statistics
Matches: 3077, Mismatches: 349, Indels: 215
0.85 0.10 0.06
Matches are distributed among these distances:
870 3 0.00
871 1 0.00
872 330 0.11
873 109 0.04
874 128 0.04
875 6 0.00
876 11 0.00
877 1 0.00
878 3 0.00
879 14 0.00
880 26 0.01
882 23 0.01
883 9 0.00
884 65 0.02
885 12 0.00
886 15 0.00
887 258 0.08
888 55 0.02
889 103 0.03
890 45 0.01
891 28 0.01
892 58 0.02
893 111 0.04
894 138 0.04
895 206 0.07
896 64 0.02
897 53 0.02
898 10 0.00
899 316 0.10
900 46 0.01
901 105 0.03
902 54 0.02
903 251 0.08
904 5 0.00
905 6 0.00
906 63 0.02
907 208 0.07
908 26 0.01
909 111 0.04
910 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTTTGGCCGACGTAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACGAACTAAGGGTTGCGGCAGCAAGATCGACAGCACGC
AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATGGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACGGCATTGGGGT
TCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTCTAAAAAATCCTGAACCGCAA
AAAGTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
Found at i:11118312 original size:26 final size:26
Alignment explanation
Indices: 11118276--11118328 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11118266 GTTGACTTAG
11118276 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11118302 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11118328 G
1 G
11118329 ATTGACCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11120095 original size:26 final size:26
Alignment explanation
Indices: 11120059--11120111 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11120049 GTTGACTTAG
*
11120059 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
11120085 GCATACGAAGTTCATTCCCCGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11120111 G
1 G
11120112 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11124321 original size:890 final size:879
Alignment explanation
Indices: 11121572--11128007 Score: 6812
Period size: 890 Copynumber: 7.3 Consensus size: 879
11121562 NNNNNNNNNN
* * * *
11121572 TCGTCTTGCCATGAAATTTAACGCGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAA
1 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * ** * *
11121637 AACT-GTATTGTCATGCAGAAATAAGAAGA-GTGCCTAAATTCACCTAGCACCCTATCGATCCAT
66 AA-TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
11121700 GGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTG-CC-CGCTGCCCGCCCGCTCCATTTTCGTT
130 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCCCGCT-CA-TTTCG-T
* * * *
11121763 TGGTTGGCTTAGGCATACGGAGTTC-TAT-CCAGTCTAAGATCAGCGACCAGACCGCGAGTGTT-
192 CGGTTGGCTTAGGCATACGGAGTTCAT-TCCCAGTCTAAGATCA--GACC-GAAC-TGAGGGTTG
* * * * * * ** *
11121825 -ATGCAGCAGGATCGCGCAGCACGCAGA-TGGGACCCGACCGATCCTCGGTTTATGCATCTCGCC
252 CA-GCAGCAGGATTG-GAAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * * * * * *
11121888 CCTCT-G-CGGCTGATTG-CCACATGCTC-TGTTCGTGGGTTCACTTAGGCATACGGAGTTCATT
315 CTTCTGGCCGGCT-A-AGCCCGCACGCTCGT-TTCAT-GGTTGACTGAGG-ATACGGA--TCATT
* * * *
11121949 CCAGCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGATC-GAGCCG-GGGTTCGATGAGGC
373 CCAGC--AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCGAGGG-T---TGCGGC
* ** * * *
11122012 AGCACATGCTGGGCTCGGG---GTACTGAT---GCATATTTTCTTC-AC-GAGCACCATCGTCGG
431 AGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCAT-TTTTCTTCGTCGGGGCACCATCGTCGG
* * * * **
11122069 A-AACCTGACCGACGGCATT-GGG-T-CAACGATCGGGGGGCGAGGGGGCTTGTGCAAAACATGA
495 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGG-GTGTGC-GCACATGA
* * * *
11122130 TG-GTGATAGAT-CTGGTACTT-GCCCATATATTGGCCCCCCTAT-CCTCATCAAACCTCGAGAA
558 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAG-A
11122191 ACTCACACCCCCTTAAAG-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
621 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-T
*
11122255 CTGAAATGGGGACACTTTTTTCAAATGGTCCACCAAAATCCTGTACACTTCGAAG-TTTTAGCTG
685 CTGAAATGGGGACACTTTTTTCAAATGGT-CA-CAAAATCTTGTACACTTCG-AGTTTTTAGCTG
*
11122319 AATTTTTTTTTGCATGCCATA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTC
747 AATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * *
11122382 CTTCCAAAAAAATTTTAAACAATCCCGAACAGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA
811 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
11122447 CGAG
876 CGAG
* *
11122451 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAAATTACAAGCCATAAA
1 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
11122516 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
66 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * ** *
11122581 GCTTGCGCATCCCGTCTCTTTGGCTGGCGAAGTACTCGCCCGC-CCGCCCGCCCGCTTGTTTCAT
131 GCTTGCGCATCCCGTCTCTCTGGCCGGC---GTAGT-GCCCGCGCCGCCCGCCCGCTCATTTCGT
* * ** * *
11122645 TGGTAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTACTGCA
192 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCA
* * * * ** *
11122710 GCAGGATCGGTAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCTTATCCCACCC-TCTGG
257 GCAGGATTGGAAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTTCTGG
* * *
11122774 CCGGC-GAGCGCCTGCACGCTCG----AT--TT---TGTGG-T--TGA-C-TT--AG--GCATAC
322 CCGGCTAAGC-CC-GCACGCTCGTTTCATGGTTGACTGAGGATACGGATCATTCCAGCAGCATAC
*** * * * * * * * *
11122820 GGAGTTTCATTCCGTTTCAAAGATAGGATCTGACTGAGGGTTACGACAGCA-ATGGCTGGGCTC-
385 GGAG-TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT-GCTAGGCTCG
* * * * * * *
11122883 GGCATTGTGCTGG-GGCGCAAATTTTT-TTCAT-GAGGCACCCTCG-CAGAGCAATGCGGATGAC
448 GGCA-TGTGTTGGTGCCGC--ATTTTTCTTCGTCGGGGCACCATCGTCGGAG-AA--C--CTGAC
* * * * *
11122944 TGGCAGCGTTGGGGTTCCGGTCGATCGGCGGGGGCCGGGGGGGTTGTGCG-ACATGATGTGCTGA
505 CGGCGGCATTGGGGTTCC-GACGATC-G-GGGGGCCAGGGGGG-TGTGCGCACATGATGTGC-GA
* *
11123008 TGGGCTG-TGGCACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAG-ACTCACAC
565 TGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
11123071 CCCCTTAAAGAGCATTTGAGA-TTTACACGTTTGCTGCCAGTAGCGCATTAAAGTGTC-GAAAAT
629 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-CATTAAAGTGTCTG-AAAT
* * *
11123134 GAGGATAGCATTTTTCAAATGGGTCACAAAATCTTGTACACTTTCGAGTTTTTAGGCTGAATTTT
692 GGGGACA-CTTTTTTCAAAT-GGTCACAAAATCTTGTACAC-TTCGAGTTTTTA-GCTGAATTTT
* * *
11123199 TTTGTGGCATGCCACCAAAAGATACAAGGATCACATCTACCAAGTTTGGGGCGAAAACTCCTTCC
753 TTTGT-GCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * *
11123264 GAAAAAATTTTAAAAAATCCCAAACCGAAAAAAGTTTCAAAAATCATTAAAAATAGAAAATGAG
816 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* **
11123328 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATAATTGTATGAATTTACAAGCCATAAA
1 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* **
11123393 AATGGTATTGGCATGTTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
66 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
11123458 GCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTC
131 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--CGCC-GCCCGCCCGCTCATTTCGTC
* *
11123523 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGACCGAACTAAGGGTTGCAGCAG
193 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAG
* * * * ** *
11123588 CAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTTGGCTTGCGCATCCCGCCCATCTGGC
258 CAGGATTGGAAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGC
* *
11123653 CTGCTAAGTCCCGCACGCTCGTTCCATGGGTTGACTGAGGCATACGGCATTCATTCCCAGCCCAA
323 CGGCTAAG-CCCGCACGCTCGTTTCAT-GGTTGACTGAGG-ATACGG-A-TCATT-CCAG--C-A
* * *
11123718 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTAGG
379 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
11123783 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTAACCGAC
444 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
* *
11123848 GGCATTGGGGTTCC-AGCGATC-GGGGGCCAGGGCGGTGTGCGCACATGATGTGCGTTGGGTGCT
509 GGCATTGGGGTTCCGA-CGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
11123911 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
573 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
** **
11123976 GAGCATTTGAGATTTTACAGGTTTGCTATCAGTATTCATTAAAGTG-CTTGAAATGGGGACACTT
638 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTT
* * *
11124040 TTTTCAAATGGTCGCAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA
702 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
11124105 CAAAAATACAAGGATCACGTCTACCATGTTTGGTGCCAAAACTTCTTCCAAAAAAATTTTAAAAA
767 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* *
11124170 ATCCCAAACCGTAAAAAGTCTCAAAAATCGTGAAAAATAGAAAACGAG
832 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* **
11124218 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAA
1 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
11124283 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTAT
66 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-AC
* * * * * * *
11124348 GGCTTGCCCATCCC-TCTCTCGTGACCAG-ATAGTGCCCGC-TCGTCGCGCTCG-TC-TTT-GTC
130 GGCTTGCGCATCCCGTCTCTC-TGGCCGGCGTAGTGCCCGCGCCG-CCCGCCCGCTCATTTCGTC
* * * * * *
11124407 -GTTAGCTTAGACATACGGA-TTCATT-CCAGTCTAGGATCA-ACCGGACCGAGGGTT--AGATA
193 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAG-CA
* * * * * * *
11124466 ACAAGATTGGCAAGCACGTAGAGGGATGACCCGA-CAATCCCAAGCCTTTCGCAT-CCGCCC-TC
257 GCAGGATTGG-AAGCACGTAGAGGG-GGACCCGACCGATCCC-CGGCTTGCGCATCCCGCCCTTC
* * * * * **
11124528 TAGCCGGTTGAGAGCCCGCACGGCTTCGTTTTCGTGGATGACTTAGGGATACAAAAGTACATTCA
319 TGGCCGGCT-A-AGCCCGCAC-GC-TCG-TTTCATGGTTGACTGA-GGATAC-GGA-T-CATTC-
* * * * *
11124593 CAGTCCAG-AGACGGAG-TGATTCCCAGTTTAAGATCGATACTGGA-CGAGGGTTGCGGCAGCA-
374 CAG--CAGCATACGGAGTTCATTCCCAGTCTAAGATCG-GACCGGACCGAGGGTTGCGGCAGCAC
* *
11124654 ATGCTAGGGCTCGGGCATGTTGTTGGTG-CGTATTTTTCTTCG-CGTGGCACATTCGTGGAACAT
436 ATGCTA-GGCTCGGGCATG-TGTTGGTGCCGCATTTTTCTTCGTCG-GG-GCA--C------CAT
* *
11124717 CATCGGAGAACCTGACTC-GAGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGC
489 CGTCGGAGAACCTGAC-CGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGC
**
11124780 ACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
552 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
11124845 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
617 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
11124910 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAAG-TTTTAGCT
682 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCT
11124974 GAATTTTTTTGTGCATGCCATA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
746 GAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * **
11125038 CCTTTCGAAAAAATTTTAAACAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
810 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
11125103 ACGAG
875 ACGAG
*
11125108 TCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
1 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
11125173 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
66 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
** * * *
11125238 GCTTGCGCATCCCGTCTCTCTGATCGACGTAGTGCCCGC-CCGCCCGCCCACTCGTTTCGTCGGT
131 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCCCGCTCATTTCGTCGGT
*
11125302 TGGCTCAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAACTGAGGGTTGCAGCAGCAG
196 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGCAG
* * ** *
11125366 GATT-GACAGCACGTAGAGGGGGA-CCTAGCCGATCCCCGACTTGCATATCCCGCCCCTCTGGCC
261 GATTGGA-AGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCC
* *
11125429 GACTAAGCACCCGCACGCTCGTTTCA-CG-TG--T-----T---GA-C-TT--AG--GCATACGG
324 GGCTAAG--CCCGCACGCTCGTTTCATGGTTGACTGAGGATACGGATCATTCCAGCAGCATACGG
* * * ** * * * *
11125476 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGAAAGGACTTGCTGGGCTCAGGCA
387 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
* * * *
11125541 TGTGTTGGTGCCGCATTTATCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGCGACAATGG
452 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * * * *
11125606 GGTTCAGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATTTGC-ATTGGGTACTGGTACTT
517 GGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTT
* * *
11125670 AGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCTTTAAAGAGCATT
580 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
11125735 TGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGGACACTTTTTTCAAA
645 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * *
11125800 TGGTCACAAAATCTTGTACACTTTGTGTTTTTTGCTAAATTTTTTTGTGCATGCCAAAAAAAATA
710 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
*** * *
11125865 TGGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCCGAA
775 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
*
11125930 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
840 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
11125970 TCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
1 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
11126035 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
66 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
11126100 GCTTGCACATCCCGCCTCTTTGGCCGGTGTAGT----G-TCCGCCCGCCCGCTCATTTCGTCGGT
131 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCCCGCTCATTTCGTCGGT
** * * * *
11126160 TGGCTTAGGCATATAGAGTTCATTCGCAGTCTAAGATCGGACC-AAATCGA-GGTTGCGGCAGCA
196 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT-GAGGGTTGCAGCAGCA
* * * * *
11126223 GGATT-GATAGCATGTAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCGTCTCGCCCTTCTGGCC
260 GGATTGGA-AGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCC
* * * * * *
11126287 CGCTGAGCACCCGCATGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
324 GGCTAAG--CCCGCACGCTCGTTTCAT-GGTTGACTGAGG-ATACGGA--TCATT-CCAG-C--A
* * * *
11126352 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTGATCAGACCAGACTGAGGGTTGCGGTAG
379 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-----G----GACCGGACCGAGGGTTGCGGCAG
* *
11126417 CACATG-TTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGAGG
433 CACATGCTAG-GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG------CA-C----
* *
11126481 CATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCTGACGATCGGGGGGGCC-GAGGGGGTGTG
486 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAG-GGGGGTGTG
* *
11126545 CACACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAAC
549 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
11126610 CTCAAGAACTCGCA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCTGTA-CCTATT
614 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATT
* *
11126673 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTA
678 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * **
11126738 GCTGAATATTTTTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGAACAAAA
743 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * *
11126803 CTCCTTCTGAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTTAT-GAAAATCATGAAAAATAG
808 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT-TCAAAAATCGTGAAAAATAG
*
11126867 AAAATGAG
872 AAAACGAG
* * * * *
11126875 TCGTCTTGCCTTAAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCCTAAA
1 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
**
11126940 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
66 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
11127005 GCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCTCGCCAGCCCGCCCGCCCGCTCATTTCATC
131 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C-G-CCGCCCGCCCGCTCATTTCGTC
* * * * * *
11127070 GGGTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCCGATC-GAGGGTTACTGTA
193 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACTGAGGGTTGCAGCA
* * * ** * *
11127134 GCAGGATCGGCAAGCACGCAAAGGGGGACCCGGTCGATCCCTGGCTTGTGCATCCCGCCCTTCTG
257 GCAGGATTGG-AAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTTCTG
* * * *
11127199 GTCGGCTGAGCACATGCACGCTCGTTTC------G--TG-GG-T--TGA-C-TT--AG--GCATA
321 GCCGGCTAAGC-C-CGCACGCTCGTTTCATGGTTGACTGAGGATACGGATCATTCCAGCAGCATA
* * * * *
11127246 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATACTGGGCTTGG
384 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGG
* * *
11127311 GCATGTGTTGGAGCCGTATTTTTCTTCATCGGGGCACCATCGTTGGAGCATTGCCTGAGAACCTG
449 GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-T----C---G---GAGAACCTG
* *
11127376 ACCGGCGGCATTGGGGTTCCGACGATCGGGGATGCCAAGGGGGTGTGCGCACATGATGTGCGATG
503 ACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCAGGGGGGTGTGCGCACATGATGTGCGATG
11127441 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
567 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
** *
11127506 CTTAAAGAGCGCTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
632 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * * **
11127571 CATTTTTTTCAAATGGTCACAAAATCTTATACAGTTTGAGTTTTTAGCTGAATTGTTTTCAGCAT
697 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * ** * * *
11127636 GCTAGCAAAAATACAAATATCTCGTCTACCAAGTTTGGGGCTAAAACCCCTTCCGAAAAAATTTT
762 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
*** *
11127701 AAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAG
827 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
11127754 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAA
1 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
11127819 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACG
66 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
11127884 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----G-GCCGCCCGCCCGCTCGTTTCGTCGGT
131 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCCCGCTCATTTCGTCGGT
* * * * *
11127944 TGGCTTAGGCATACGAAGTGCATTCCCAGTCTAAGATCAGA-CAAGACCGAGGGTTGCGGCAGCA
196 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTGAGGGTTGCAGCAGCA
11128008 CATGATGGGC
Statistics
Matches: 4737, Mismatches: 553, Indels: 542
0.81 0.09 0.09
Matches are distributed among these distances:
854 4 0.00
855 16 0.00
857 10 0.00
858 174 0.04
859 9 0.00
860 10 0.00
861 63 0.01
862 468 0.10
863 3 0.00
864 2 0.00
866 10 0.00
867 11 0.00
868 3 0.00
869 26 0.01
870 69 0.01
871 86 0.02
872 95 0.02
873 62 0.01
874 52 0.01
875 18 0.00
876 34 0.01
877 343 0.07
878 205 0.04
879 505 0.11
880 209 0.04
881 68 0.01
882 54 0.01
883 55 0.01
884 30 0.01
885 21 0.00
886 5 0.00
887 8 0.00
888 7 0.00
889 86 0.02
890 689 0.15
891 47 0.01
892 19 0.00
893 36 0.01
894 45 0.01
895 185 0.04
896 96 0.02
897 23 0.00
898 1 0.00
899 7 0.00
900 17 0.00
901 4 0.00
902 8 0.00
903 55 0.01
904 33 0.01
905 376 0.08
906 127 0.03
907 1 0.00
908 1 0.00
909 1 0.00
913 62 0.01
914 17 0.00
915 65 0.01
916 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCGCCCGCCCGCTCATTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGCAG
GATTGGAAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCGG
CTAAGCCCGCACGCTCGTTTCATGGTTGACTGAGGATACGGATCATTCCAGCAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTG
TTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
CCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
Found at i:11126355 original size:26 final size:26
Alignment explanation
Indices: 11126326--11126388 Score: 117
Period size: 26 Copynumber: 2.4 Consensus size: 26
11126316 GTTGACTTAG
*
11126326 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11126352 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11126378 GCATACAGAGT
1 GCATACAGAGT
11126389 GATCAGACCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11128582 original size:711 final size:711
Alignment explanation
Indices: 11127217--11128692 Score: 2280
Period size: 711 Copynumber: 2.1 Consensus size: 711
11127207 AGCACATGCA
* * * **
11127217 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAAGACCG
* * *
11127282 AGGGTTGCGGCAGCACATACTGGGCTTGGGCATGTGTTGGAGCCGTATTTTTCTTCATCGGGGCA
66 AGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGAGCCGCATTTTTCTTCATCGGGGCA
* * * * *
11127347 CCATCGTTGGAGCATTGCCTGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGATGCC
131 CCATCGTCGGAGCATCGCCAGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGAGGCC
* *
11127412 AAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
196 AAGGGGGTGTGCGCAAATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
11127477 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGCTTGAGATTTTACAGGTTTGCTGCC
261 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTACACGTTTGCTGCC
* *
11127542 AGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTATACAGTT
326 AGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTATACACTT
* * * * *
11127607 TGAGTTTTTAGCTGAATTGTTTTCAGCATGCTAGCAAAAATACAAATATCTCGTCTACCAAGTTT
391 CGAGTTTTTAGCTGAATTGTTTTCAGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTT
* * * * *
11127672 GGGGCTAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGT
456 GGGGCCAAAAACCCTTCCAAAAAAATTTAAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCAT
* * *
11127737 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATC
521 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATC
* *
11127802 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
586 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGAGCCTAAACCCACCAAC
* *
11127867 CACCCTGTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGGCCGCCCGCC
651 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAG-CATAGTGGCCGCCCGCC
*
11127928 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTGCATTCCCAGTCTAAGATCAGACAAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAAGACCG
* * **
11127993 AGGGTTGCGGCAGCACATGA-TGGGCTCGGGCATGTGCTGGTGCGGCATTTTTCTTTGTCGGGGC
66 AGGGTTGCGGCAGCACAT-ACTGGGCTCGGGCATGTGCTGGAGCCGCATTTTTCTTCATCGGGGC
* *
11128057 ACCATCGTCGGAGCATCGCCAGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATTGGGGGGGC
130 ACCATCGTCGGAGCATCGCCAGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGAGGC
*
11128122 C-GGGGGGTGTGCGCAAATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
195 CAAGGGGGTGTGCGCAAATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
11128186 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGT
260 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTACACGTTTGCTGC
* *
11128251 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTT-AAATGGTTACAAAATCTTGTACAC
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTTTTCAAATGGTCACAAAATCTTATACAC
*
11128315 TTCGAGTTTTTAGCTGAATT-TTTT-AGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
389 TTCGAGTTTTTAGCTGAATTGTTTTCA--GCATGCCAACAAAAATACAAAGATCACGTCTACCAA
* * * **
11128378 GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCTCGAACTACAACAAGTTTGGAAAA
452 GTTTGGGGCCAAAAACCCTTCCAAAAAAATTTAAAAAAATCCCGAACTACAAAAAGTTTCAAAAA
* *
11128443 TTATGAAAAATACAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTG
517 TCATGAAAAATA-AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATG
* * *
11128508 GTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAGAAATATGATGATGAGCCTAAACCCA
581 GTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGAGCCTAAACCCA
*
11128573 CCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCAGCATAGTGGCCGCCCGC
646 CCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGGCCGCCCGC
11128638 C
711 C
* * *
11128639 CGCTCATTTCGTCGGTTGGCTTAGGCATATGCAGTTCATTCCCAGTCTAAGATC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
11128693 GAACCGAATC
Statistics
Matches: 694, Mismatches: 65, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
708 1 0.00
709 4 0.01
710 288 0.41
711 399 0.57
712 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (711 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAAGACCG
AGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGAGCCGCATTTTTCTTCATCGGGGCA
CCATCGTCGGAGCATCGCCAGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGAGGCC
AAGGGGGTGTGCGCAAATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTACACGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTATACACTT
CGAGTTTTTAGCTGAATTGTTTTCAGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTT
GGGGCCAAAAACCCTTCCAAAAAAATTTAAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCAT
GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATC
AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGAGCCTAAACCCACCAAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGGCCGCCCGCC
Found at i:11128859 original size:26 final size:26
Alignment explanation
Indices: 11128822--11128874 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11128812 GTTGACTTAG
11128822 GCATACGAAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
* *
11128848 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
11128874 G
1 G
11128875 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:11130628 original size:26 final size:26
Alignment explanation
Indices: 11130599--11130651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11130589 GTTGACTTAG
* *
11130599 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
11130625 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
11130651 G
1 G
11130652 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:11131538 original size:26 final size:26
Alignment explanation
Indices: 11131502--11131554 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11131492 GTTGACTTAG
11131502 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11131528 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11131554 G
1 G
11131555 ATCAGACTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11131727 original size:902 final size:905
Alignment explanation
Indices: 11127952--11138724 Score: 11405
Period size: 903 Copynumber: 11.9 Consensus size: 905
11127942 GTTGGCTTAG
* * * ** *
11127952 GCATACGAAGTGCATTCCCAGTCTAAGATCAGACAAGACCGAGGGTTGCGGCAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
11128017 CTCGGGCATGTGCTGGTGCGGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * *
11128082 ACCTGACAGGCGGCATTGGGGTTCC-GACGATTGGGGGGGCCGGGGGGTGTGCGCAAATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCAG-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
11128146 CGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
11128211 ACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11128276 GGGGACACTTTTTTTAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTAG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
11128341 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* ** * * ** *
11128406 ATTTAAAAAAATCTCGAACTACAACAAGTTTGGAAAATTATGAAAAATACAAAAACGAGTCGTCT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATA-GAAAACGAGTCGTCT
* * *
11128471 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTGGTATGAATTTACAAGGCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
11128536 ATTGGCATGCAGAAATATGATGATGAGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
11128601 GCATCCCGTCTCTTTGGCCAGCATAGTG---G-CCG--C-C-CG-C--CCGCTCATTTCGTCGGT
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGCCGCTCGTTTCGTCGGT
* * * * * * * * **
11128655 TGGCTTAGGCATATGCAGTTCATTCCCAGTCTAAGATCGAACCGAATCAAGGGATGCGACAATAG
714 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG-TAGCAG
* * * * ** * **
11128720 GATTGGCAACATGCAGAGGGGGAGCCGATCGATCCTCGGCTTGTACATCCCGCCCCTCTGGCCGG
778 GATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
11128785 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTAATTCCCAGTCTAA
843 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11128848 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGGACATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
11128913 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTAGGGCACCATCGCCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCATCGGAG
* ** * *
11128977 AACCTGACCGGCGGCATTGGGGTTCCAGCGAAAGGGGGGGCTGGGGGGTGTGCACACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
** * *
11129042 CGATGGGTGCTGGCGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCGC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
11129107 ACCCCCTTAGAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11129172 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
11129236 TGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * **
11129301 ATTTTAAACAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
** ** * *
11129366 GCCATGAAACTTCACGTGAAGGCTTAAAAGACTGTTGTATGAATTTACAAGTCATAAAAATGGTA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
11129431 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCA
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * *
11129496 CATCCTGTCTCTCTGGCCGGCGTAGTGCTTGCCCGCCCGCCCGCCT---GCTCGTTTCGTCGATT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGCCGCTCGTTTCGTCGGTT
* ** * * * * *
11129558 GGCTTAGGCATACGAAGTTCATTCCCAACCTAAGATTGGATCAGACCGAGGGTTGCGAGAGTAGG
715 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG-TAGCAGG
* ** * * *
11129623 ATCGACAGCACAAAGAGGGGTG-CCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGA
779 ATCGGCAGCACGCAGAGGGG-GACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
11129687 CTGAGC-GCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
11129749 G-AT-C-G-G---A-T--C-G-----GAT----------CGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
11129788 CTTGGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGCCACCATCG-CTGGAGCATCA-CCGA-
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCATCGGAG
* * * * *
11129850 AACCTGATCGACGGCATTGCGGTTCC-GACGATCGGGGGGGCCAGGGGGTGTGCCCAAATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCAG-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
11129914 GCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCGTCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
11129979 CACTCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAA
259 CAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
11130044 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * * *** *
11130109 TTGTGCAT-CCAAGAAAAATACAAGGATCACATCTACTAAGTTTGTCACCAAAACCCCTTTCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * * * * *
11130173 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCTTGAAAAATAAAAAACGAGTTGT
452 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
11130238 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
11130302 GCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCCATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
11130367 GCGCATCCAGTCTCTCTGGCTGGCGTCA-TGCCCGCCCGCCCAC-CCCCCGCCCGCTCGTTTCGT
647 GCGCATCCCGTCTCTCTGGCCGGCGT-AGTGCCCGCCCGCCCGCTCGCCTG-CCGCTCGTTTCGT
** * * * * ** *
11130430 TAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGAATCGGGTCGAGGGTTGCGCAG
710 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGTAG
* * * * * *
11130495 CAGGAT-GGCAGCACACAAAGGGGGACTCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGC
775 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
11130559 CGACTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
840 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
11130624 A
905 A
* * * * * **
11130625 GCATACAGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACCTATTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * ** ** * *
11130690 CTCTAGAATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCTAGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCATCGGAG
* * *
11130755 AACCTGACCGACGGCATTGGGGTTCCAGTGATTGGGGGGGCCGGGGGGTGTGCACACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
11130820 CGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAAAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
11130884 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTATCAGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11130949 GGGGACAATTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTT
*
11131014 -TGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCTTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* *
11131077 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCCTCT
454 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
11131142 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
11131207 ATT-GCACACAAAAATATAAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
11131271 ACATCCCGTCTCTTTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGCCTGCCTGCTCGTTTCGT-AG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGCC-GCTCGTTTCGTCGG
* * *
11131335 TTGGCTTAGGCATACGGAGTTCATTCCCAAG-CTAAGATCAGACCGGACCAACGGTTGCGATAGC
713 TTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCG-TAGC
* * * * ** * * ** * *
11131399 AAGATTGGCAGCATGTAGA-GGGGACCCGGTTGATCCCTGACTTGCTTATCCTGCCCCTCTGGTC
776 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
11131463 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** * * * *
11131528 GCATACGGAGTTCATTCCCAGTTTAAGATCAGACTAAACCGAAGGTTGTGGGAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11131593 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCTCCATCGTCGGAGCATCATCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * *
11131658 ACCTGACCGATGCCATCGGGGTTCCAGGGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
11131723 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
11131788 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
11131853 GGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
11131918 GCATGCCAACAAAAATACAAGAATTATGTCTACCAAGTTTGGGCCCAAAACTCC-TTCTG--AAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAA
* * *
11131980 ATTTTAAAAAATC-CAGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCCTCT
455 ATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
11132044 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
11132109 ATTGGCACGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
11132174 GTATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCACGTCGGCTCGCCTGCCTGCTCGTTTCGTCGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGCC-GCTCGTTTCGTCGG
* * * *
11132239 TTGGCTTAGGCTTACGGAGTTCATTCCCAGTGTAAGATTGGACCGGACTGAGGG-T---T-----
713 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGTAGCAG
* * * ** **
11132295 G-T-GGCAGCACACAAAGGTGGATGCGATCGATCCCCGGCTTGCGCA-CCCGCCCCTCTGGCCGG
778 GATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
11132357 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
843 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
11132420 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGCAACAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
11132485 CTCAGGCAAGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCA---TC---G---C--CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * * * * *
11132538 ACTTGACCGGCGGCATTGGGCTCCCGGCGAT-TGGGGGG-CAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
11132601 GATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
11132666 CCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
11132731 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TATTGATTTTTTAGCTGAATTTTTTTG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
11132795 TGCATGCCAACAAAAATACAAGCATCATGTCTACAAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* *
11132860 ATTTTAAAAAAATCTCGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 ATTTT-AAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
11132925 TGCCATAAAACTTCATGTGATGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAAAGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
11132990 ATTGGCACGTAGAAATATGAAGATGTGTCTAAGCCCACCT-CCTACCCTATCGATCCACAGCTTT
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCCTATCGATCCACGGCTTG
* ** * * *
11133054 CGCATCCCGTCTCTTTGGCCAACGTAGT----GCCCGCCC-ATC-CGT-CCGCTCGTTTCGTTGG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGCCGCTCGTTTCGTCGG
* * *
11133112 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGGACCGAGGGTTGCGGTAGTA
713 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GTAGCA
* * * * * *
11133177 GGATTGGCAGCACACAGAGGGGGACCCGGCCGATCCTCGGCTTACGCATCCCGCCCTTCTGGCCA
777 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
11133242 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
11133306 GCATATGGAGTTCATTCCCAATCTAAAATTGGACCGGATCGAGGGTTGCGACA-AAGGATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA-CATGCTGG
* * * * *
11133370 GATCGGGCATGTGTTGGTGCCGCATTTTTCTTTGTTGGGGCACCATCGCCGGAGCATCA-CTGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC-GGA
* *
11133434 GAACCTGACCGACGGCATTGGGGTTCC-GACGA-C-CGGGGGCCGGGGGCTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCAG-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
*
11133496 TGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCTCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
11133560 ACACCCCCTTAGAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
11133625 ATGGGGACGCTTCTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
11133690 TGTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTCGGGCCAAAACTCCATCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * **
11133755 AAATTTT-AAAAATCTCAAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11133819 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
11133884 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGTTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
11133949 CGCATCTCGTCTCTCTGGCCGGCATAGTGCTCGCCCACTCGC-C-CGT-CCGCTCGTTTCGTCGG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGCCGCTCGTTTCGTCGG
* ** * * * * * * *
11134011 TTCGCTTAGGCATACGGAGTTCATTCCTGGTCTATGATCGGATCGTACCAAGGGTTACATCAGTA
713 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGT-AGCA
* *
11134076 GGATCAGCAGCACGCAGAGGGTGACCC-GCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
777 GGATCGGCAGCACGCAGAGGGGGACCCGGC-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
11134140 GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGTATATGGAGTTCATTCCCAGTCTAA
841 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
11134205 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
11134270 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * * *
11134335 ACCTAACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGTCGGGGGCTGTGCGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
11134400 GATGGGTGCTGGCACATGGCCCTTATATTTGCCCCCTTATCCCTCATCAAACCTCGAGAACTCGC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATCAAACCTCGAGAACTCAC
* *
11134465 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAG-TGCCAATAGTCATTAAAGTGTCTGAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-GCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
11134529 TGGGGACACTTTTTTCAAATGGTCACCAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
11134594 GTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * *
11134659 AATTTTAAAAAATC-CTGAACCGCAAAAAGTTTTAAAAAACATGAAAAATAGAAAACGAGTCGTC
454 AATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
11134723 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTGCAAGCCATACAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
11134788 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTA-CACCCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
**
11134852 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGATCG--C-C-CG-C--CCGCTCGTTTCGTCGG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGCCGCTCGTTTCGTCGG
* * * * *
11134910 TTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGTCTGAGGGTTGTAGTAGCA
713 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-CGTAGCA
** * * * * *
11134975 GGATCGATAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTACGTATCCCACCCCTCTGGTCG
777 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
11135040 GCTGAGCACCCGCACGCTCATTTCATGGGTTGACCTAGGCATACGGAGTTCAATCCAAGTCTAA
842 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** ** * *
11135104 GATCAGACCGGA--CCAAGGGTTGCGGCAGCAGGATCGGCAACATATAGAGGGGGACCCGACCGA
1 G--CATA-CGGAGTTC-A---TT-C--C--CA-G-TC--TAAGAT-CGGA-CCGGA-CCGA-GGG
** ** * * * * * * ***
11135167 TCCCTGGCATGTGCATCCCGGCCCTCTGGC-CG-GCTGAGCGCCCGCA-CGCTCGTTTCGT-GGG
46 TTGC-GGCA-GCACATGCTGG-GCTCGGGCATGTGCTG-GTG-CCGCATTTTTC--TTCGTCGGG
* * * * * * * * *** *
11135228 TTG-ACTTAGGCATACGTAG-TTCATTAC-CAG-A-CTAAGCAGACGG-AGTT-CAATCCCAGTC
104 --GCAC-CA-TCGT-CGGAGCATCA-T-CGGAGAACCTGA-CCGACGGCA-TTGGGGTTCCAG-C
*** ** * * * * * * * *
11135286 TAAGATCAGACCGGATCGAGGGTTGT-AGTAGCA-GATGCTGGGCTTGG-GCATGTGT--TGGTG
159 ---GATC-GGGGGGGCCGGGGGGTGTGCGCA-CATGATG-TGCGATGGGTGC-TG-GTACTTG-G
*** * **** * * * ** *
11135346 CCACATT-T-TTCTTCACC-GGGGCACATCAACGGGGCATCGTCGGAGAACCTGACCGACAGCAT
215 CC-C-TTATATTGGCCCCCTATCCCTCATCAA------A-CCTC-GAGAA-CTCA-C-ACCCCCT
** *** * * * **
11135408 T---G-GGGTTTCGACGATCGGGGTGGCCGAGGGGTGTGC-GCACATGATGTGCGA-T-GGGTG-
267 TAAAGAGCATTT-GA-GAT-----TTTAC-A--GGTTTGCTGC-CA-G-T-AGCCATTAAAGTGT
* * * * * ** ** ** ** * ** ***
11135465 CTGGTACT-TGG-CCCTTATATTGGCCCCCTATCCCTCACCAACCCTCGAGAACTCACACCCCCT
318 CT-GAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAA-AATCTTGTA--CACTTCGAGT
*** ** * *
11135528 TAAAGAGCATTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-C
371 T-TTTAGC--TGA-ATTTT-----TTTG-TG-CA-T-GCCAACAAAAAT-AC---AA---GGATC
* * * * **
11135591 ACTGTGT-TCAA--AT-GGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGT
416 AC-GTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTTCGA------A----AA----AAT-T
** * ** * *
11135651 GCATGCTAACAAAAATACAAGCATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCAAAAAAA
458 ---T--T-A-AAAAAT-CTCG-AAC-CG-C-AAAAAGTTT--TG--AAAA-T-CGT----GA---
*
11135716 GTTAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTTGTCTTG
498 ------AAAAT--------------A-----GAAAA-C----------G------AGTCGTCTTG
*
11135781 CCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
11135846 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGCCTTGCGC
586 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
11135911 ATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCG-C--CCGCTCGTTTCGTCGGTTG
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGCCGCTCGTTTCGTCGGTTG
* * * * * *
11135973 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGTTTGTGGCAGCAAGA
716 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-CGTAGCAGGA
* * * *
11136038 TCGGCAGCACGCAG-GGGGGACCCGACCGATCCCCGGCTTACGTATCCCGCCCCTCTGGCCGACT
780 TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
11136102 GAGCACGCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAA
845 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
11136163 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGACGATTGCGGTAGCATATGCTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11136228 CTGGGGAATGTGTTGGTGTCGCATTTTTCTTCGCTC-GGGAACCATCGTCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCATCGGAG
* * * * *
11136292 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCTGGGGGGTGTGTGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
11136357 CGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
11136422 A-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11136486 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
11136551 TGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGTCCAAAACTCCGTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * * * *
11136616 ATTTTAAAAAATCTCGAACTGCAAAAAGTTTCGAAAGTCGTGAAAAGTAAAAAATGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * **
11136681 GCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTTCCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
11136746 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * **
11136811 CATCCCGTCTCTCTAGCCGGCTTAGTGCCC-CCCGCCCGCCCG-CT--CGCTTGTTTCGTTTGTT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGCCGCTCGTTTCGTCGGTT
* * * * *
11136872 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGG
715 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-CGTAGCAGG
* * * * * * * * **
11136937 ATTGGTAGAACGTAGAGGGGGACCCAGCTGATCCCCGACTTGCGCATCCCGCCCCTCTAGCTAGC
779 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
11137002 TGAGCACCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
844 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11137064 GCATATGGACTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
11137129 CTCGGGCATCTGTTGCTGTCGCATTTTTCTTCGTCGGGG-AGGATCG-CCG-G-AT-AT------
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
*
11137183 -CCTGACCGACGGCATTGGGGTT-CTGACGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCAG-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
11137245 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
11137310 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11137375 GGGGACAAC-TTTTTCAAATGGTTACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTT
325 GGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
11137439 GTGCATGCCAA-AAAAATACAA-GATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * *
11137502 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATACAAAACGAGTGGTCT
454 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
11137567 TGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
11137632 ATTGGCACGTAGAAATATGAACATGTGCCT-AACCCACCTACCACCCAATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
11137696 GCATCCCGTCTCTCTGGCCGACGTAGT--------GCCCG-TC-CAC--CCGCTCGTTTCGTCGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGC-CTGCCGCTCGTTTCGTCGG
* *
11137749 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGACG--GC--AGCA
713 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG-GGTTGCGTAGCA
* * *
11137810 GGATCGGCAGCACGCAGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCC
777 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CC
* **
11137875 -GTTGAGCACCCGCACGCTCGTTTCGTATGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * * *
11137939 GCATATGAAGTTCATTCCCAGTTTAAGCTCAAACCAGACCGAGGGTTGCGACAGTACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11138004 CTCGGGTATGTGTTGGTGCCGTATTTTTCTTC-ACTGGGGCACCA---TC---G---C--CGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCATCGGAG
* ** * * * *
11138057 AACCTGACTGGTGGCGTTGGGGTTCTAACGATTGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
11138122 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
11138187 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
11138252 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
11138316 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGCCCAAAACTCC-TTCTG-AA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
* * * *
11138379 AAATTTAAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11138444 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
11138509 CATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
11138574 CGCATCCCGTCTCTCTAGCCGGCATAGTGCACGCCCG--C-C-C-AC--CCGCTCGTTTCGTCGG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGCCGCTCGTTTCGTCGG
* * * * * *
11138632 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGGTAGTA
713 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GTAGCA
* * *
11138697 GGAACGACAACACGCAGAGGGGGACCCG
777 GGATCGGCAGCACGCAGAGGGGGACCCG
11138725 ATCGATCCTC
Statistics
Matches: 8346, Mismatches: 1113, Indels: 845
0.81 0.11 0.08
Matches are distributed among these distances:
872 2 0.00
873 177 0.02
874 164 0.02
875 548 0.07
876 112 0.01
877 88 0.01
878 625 0.07
879 163 0.02
880 39 0.00
881 189 0.02
882 3 0.00
883 66 0.01
884 4 0.00
885 41 0.00
886 218 0.03
887 218 0.03
888 99 0.01
889 162 0.02
890 4 0.00
891 8 0.00
892 171 0.02
893 23 0.00
894 159 0.02
895 348 0.04
896 295 0.04
897 226 0.03
898 90 0.01
899 515 0.06
900 116 0.01
901 455 0.05
902 746 0.09
903 900 0.11
904 241 0.03
905 107 0.01
906 1 0.00
907 2 0.00
909 2 0.00
911 2 0.00
913 4 0.00
914 2 0.00
915 3 0.00
916 3 0.00
917 3 0.00
918 11 0.00
919 11 0.00
920 14 0.00
921 7 0.00
922 12 0.00
923 15 0.00
924 6 0.00
925 8 0.00
926 13 0.00
927 30 0.00
928 3 0.00
929 2 0.00
931 1 0.00
932 7 0.00
933 8 0.00
934 5 0.00
935 1 0.00
936 5 0.00
937 4 0.00
939 2 0.00
940 1 0.00
941 7 0.00
942 11 0.00
943 8 0.00
944 2 0.00
945 2 0.00
946 1 0.00
947 3 0.00
948 3 0.00
949 2 0.00
950 6 0.00
951 1 0.00
952 8 0.00
953 3 0.00
954 1 0.00
955 3 0.00
956 11 0.00
957 1 0.00
958 1 0.00
959 2 0.00
960 2 0.00
961 10 0.00
962 3 0.00
963 3 0.00
964 6 0.00
965 5 0.00
967 3 0.00
968 8 0.00
969 2 0.00
970 6 0.00
971 6 0.00
972 1 0.00
973 7 0.00
974 1 0.00
977 1 0.00
979 1 0.00
982 1 0.00
983 8 0.00
984 1 0.00
985 5 0.00
986 6 0.00
987 2 0.00
988 9 0.00
989 4 0.00
991 5 0.00
992 6 0.00
993 3 0.00
994 3 0.00
995 10 0.00
996 2 0.00
997 2 0.00
998 2 0.00
999 1 0.00
1000 11 0.00
1001 3 0.00
1002 1 0.00
1003 3 0.00
1004 9 0.00
1006 6 0.00
1007 3 0.00
1008 3 0.00
1009 3 0.00
1010 1 0.00
1011 3 0.00
1012 2 0.00
1013 9 0.00
1014 13 0.00
1015 6 0.00
1016 1 0.00
1017 2 0.00
1019 5 0.00
1020 3 0.00
1021 1 0.00
1022 4 0.00
1023 5 0.00
1024 69 0.01
1025 35 0.00
1026 20 0.00
1027 7 0.00
1028 7 0.00
1029 6 0.00
1030 29 0.00
1031 75 0.01
1032 53 0.01
1033 6 0.00
1034 22 0.00
1035 55 0.01
1036 47 0.01
1037 29 0.00
1038 65 0.01
1039 42 0.01
1040 22 0.00
1041 22 0.00
1042 19 0.00
1043 17 0.00
1044 27 0.00
1045 9 0.00
1046 1 0.00
1047 9 0.00
1048 4 0.00
1049 8 0.00
1050 3 0.00
1051 3 0.00
1052 1 0.00
1053 5 0.00
1054 5 0.00
1055 214 0.03
1056 109 0.01
1057 13 0.00
1058 7 0.00
1059 200 0.02
1060 196 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (905 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
ACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGTAGCAGGAT
CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11133316 original size:26 final size:26
Alignment explanation
Indices: 11133280--11133331 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11133270 GTTGACTTAG
*
11133280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
11133306 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11133332 AATTGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11135263 original size:159 final size:158
Alignment explanation
Indices: 11134887--11135263 Score: 414
Period size: 159 Copynumber: 2.4 Consensus size: 158
11134877 AGTGCCCGAT
* * * * *
11134887 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGA
* * ** * * * * * * *
11134952 TCGGTCTGAGGGTTGTAGTAGCAGGATCGATAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCT
65 CCGGACCAAGGGTTGCAGCAGCAGGATCGACAACACACAGAGGGGGACCCGACCGATCCTCGGCA
* *
11135017 TACGTATCCCACCCCTCTGGTCGGCTGAG
130 TACGCATCCCACCCCTCTGGCCGGCTGAG
* * * * *
11135046 CACCCGCACGCTCATTTCATGGGTTGACCTAGGCATACGGAGTTCAATCCAAGTCTAAGATCAGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGA
* * * *
11135111 CCGGACCAAGGGTTGCGGCAGCAGGATCGGCAACATATAGAGGGGGACCCGACCGATCC-CTGGC
65 CCGGACCAAGGGTTGCAGCAGCAGGATCGACAACACACAGAGGGGGACCCGACCGATCCTC-GGC
** **
11135175 ATGTGCATCCCGGCCCTCTGGCCGGCTGAG
129 ATACGCATCCCACCCCTCTGGCCGGCTGAG
* *
11135205 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTACCAGACTAAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG
11135264 CAGACGGAGT
Statistics
Matches: 177, Mismatches: 38, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
158 3 0.02
159 172 0.97
160 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.21
Consensus pattern (158 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGAC
CGGACCAAGGGTTGCAGCAGCAGGATCGACAACACACAGAGGGGGACCCGACCGATCCTCGGCAT
ACGCATCCCACCCCTCTGGCCGGCTGAG
Found at i:11136166 original size:26 final size:26
Alignment explanation
Indices: 11136137--11136189 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11136127 GTTGACTTAG
*
11136137 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11136163 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11136189 G
1 G
11136190 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11136815 original size:901 final size:894
Alignment explanation
Indices: 11135048--11138732 Score: 4985
Period size: 901 Copynumber: 4.1 Consensus size: 894
11135038 CGGCTGAGCA
* * * * * * * *
11135048 CCCGCACGCTCATTTCATGGGTTGACCTAGGCATACGGAGTTCAATCCAAGTCTAAGATCAGACC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * *** * *
11135113 GGACCAAGGGTTGCGGCAGCAGGATCGGCAACATATAGAGGGGGACCCGACCGATCCCTGGCATG
66 GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * *
11135178 TGCATCCCGGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
131 CGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * * *
11135243 GTAGTTCATTACCAGACTAAGCAGACGGAGTTCAATCCCAGTCTAAGATCAGACCGGATCGAGGG
196 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGG
* * * * * *
11135308 TTG-TAGTAGCAGATGCTGGGCTTGGGCATGTGTTGGTGCCACATTTTTCTTCAC-CGGGGCACA
261 TTGCGA-CAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACTCGGGAC-CA
** * * * *
11135371 TCAACGGGGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTT-TCGACGATCGGGGTGGCCGA
324 TCGTC-GGG-ATCATCGGAGAACCTGACCGACGGCATTGGGGTTCT-GACGATCGGGG-GGGCGG
11135435 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
385 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
11135500 CACCAACCCTCGAGAACTCACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGT
450 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
11135564 AGCCATTAAAGTGTCTGAAATGGGGACACTGTGTTCAAATGGTCACAAAATCTTGTACACTTCGA
515 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
11135629 GTTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGCATCACGTCTACCAAGTTT-GG
580 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
*
11135693 TGCCAAAACTCCTTCCAAAAAAAGTTAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGA
645 T-CCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGA
* *
11135758 AAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAA
709 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
11135823 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
774 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
11135888 CCCTATCGATCCATGCCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCG
839 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGT-----CCCGCCCG
* *
11135949 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * *
11136014 GGACTGAGGTTTGTGGCAGCAAGATCGGCAGCACGCAG-GGGGGACCCGACCGATCCCCGGCTTA
66 GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * *
11136078 CGTATCCCGCCCCTCTGGCCGACTGAGCACGCACACACTCGTTTCGTGGGTTGACTTAGGCATAC
131 CGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* ** * *
11136143 GGATTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGACGA
196 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGG
** * * * * * * *
11136208 TTGCGGTAGCATATGCTAGACTGGGGAATGTGTTGGTGTCGCATTTTTCTTCGCTCGGGAACCAT
261 TTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACTCGGG-ACCAT
* *
11136273 CGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTT-TCGGCGATCGGGGGGGCTGGG
325 CGTCGG-G-ATCATCGGAGAACCTGACCGACGGCATTGGGGTTCT-GACGATCGGGGGGGC-GGG
* *
11136337 GGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTC
386 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
11136402 ATCAAACCTCGAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
451 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
11136466 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAG
516 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
11136531 TTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGT
581 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGT
* * * * * *
11136596 CCAAAACTCCGTT-CGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCGAAAGTCGTGAA
646 CCAAAACTCC-TTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAA
* * ** *
11136660 AAGTAAAAAATGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAAT
710 AAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* **
11136725 TTACAAGCCATAAAATTTCCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
775 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
*
11136790 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCTTAGTGCCC-CCCG
840 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGT-CCCGCCCG
**
11136845 CCCGCCCGCTCGCTTGTTTCGTTTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
1 CCCGCCCGCT--C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * *
11136910 GACCAGACCAAGGGTTGTGGCAGCAGGATTGGTAGAACGTAGAGGGGGACCC-AGCTGATCCCCG
62 GACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCG
* * * * *
11136974 ACTTGCGCATCCCGCCCCTCTAG-CTAGCTGAGCACCCGTACGCTTGTTTCGTGGGTTGACTTAG
126 GCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
11137038 GCATACAGAGTTCATTCCCAGTCTAAGCATATGGACTTCATTCCCAGTCTAAGATCGAACCGAAC
190 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGAC
* * * *
11137103 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATCTGTTGCTGTCGCATTTTTCTTC-GTCGGG
255 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACTC-GG
** * *
11137167 GAGGATCG-CCGGAT-AT-------CCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCC
319 GACCATCGTCGGGATCATCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCG
*
11137223 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCC
384 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
11137288 TCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
449 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
11137353 TAGCCATTAAAGTGTCTGAAATGGGGACAAC-TTTTTCAAATGGTTACAAAATCTTGTACACTTT
514 TAGCCATTAAAGTGTCTGAAATGGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
11137417 GATTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAA-GATCACGTCTACCAAGTTTG
578 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
11137480 GGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATCGTG
643 GGTCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTG
* * * *
11137545 AAAAATACAAAACGAGTGGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGA
708 AAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
11137610 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAACATGTGCCT-AACCCACCTACC
773 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
11137674 ACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---GCCCG
838 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTCCCGCCCG
* * *
11137728 TCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * ** *
11137793 AGACCGA--G--ACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCAATCCCCGGCTTG
66 GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * **
11137854 CGCATCCTGCCCCTCTGGTCCG-TTGAGCACCCGCACGCTCGTTTCGTATGTTGACTTAGGCATA
131 CGCATCCCGCCCCTCTGG-CCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
11137918 CGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTTTAAGCTCAAACCAGACCGAGG
195 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGG
* * * * *
11137983 GTTGCGACAGTACATGTTGGGCTCGGGTATGTGTTGGTGCCGTATTTTTCTTCACTGGGGCACCA
260 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACTCGGG-ACCA
* ** * * *
11138048 ---TC--G--C--CGGAGAACCTGACTGGTGGCGTTGGGGTTCTAACGATTGGGGGGGCCAGGGG
324 TCGTCGGGATCATCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGG-C-GGGG
*
11138104 GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
387 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
11138169 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG
452 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
11138234 CCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
517 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
11138299 TTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGCC
582 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTC
** *
11138363 CAAAACTCCTT-CTGAAAAATTTAAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAAAA
647 CAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAA
11138427 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
712 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
11138492 ACAAGCCATAAAAAAGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCC
777 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
11138557 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCACGCCCG
842 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGT-CCCGCCCG
* *
11138611 CCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * * *
11138676 GAACTGAGGGTTACGGTAGTAGGAACGACAACACGCAGAGGGGGACCCGATCGATCC
66 GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
11138733 TCGACTTAGG
Statistics
Matches: 2469, Mismatches: 266, Indels: 112
0.87 0.09 0.04
Matches are distributed among these distances:
872 1 0.00
874 1 0.00
875 200 0.08
876 35 0.01
877 21 0.01
878 362 0.15
879 145 0.06
881 1 0.00
883 83 0.03
885 1 0.00
886 59 0.02
887 218 0.09
888 95 0.04
889 163 0.07
890 3 0.00
896 16 0.01
897 6 0.00
898 2 0.00
899 2 0.00
900 285 0.12
901 764 0.31
902 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
CGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGG
TTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACTCGGGACCATC
GTCGGGATCATCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAA
ACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAG
AAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTCCCGCCCG
Found at i:11140482 original size:902 final size:896
Alignment explanation
Indices: 11138742--11142931 Score: 5003
Period size: 894 Copynumber: 4.7 Consensus size: 896
11138732 CTCGACTTAG
* *
11138742 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
11138807 CTCGAGCATGTGCTGGTGCTGTACTTTTCTTCGTCGGGGCACCATCACCGAAGCATTGTCGAAGA
65 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCAT-GGGGCACCATCACCGGAGCATCGTCGGAGA
* * ** *
11138872 ACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGCC-GAGGG-G-G-G----T-A--TGCG
129 ACCTGACCGGCGGCATT-GGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
11138926 ATGGGTACTCGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
11138991 CACCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
**
11139056 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTGTG
* * * * *
11139121 CATGCCAACCAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAT
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
11139186 TTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
452 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * * * *
11139251 CATGAAACTTCACGTGAAGGCTGATGAGAGCATTGTATGAATTTACAACCCATAAAAATGGCACT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
11139316 GGCACACAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCA
582 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * ** *
11139381 TCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCACCGGCCCTCTCGCTTCGTCGGTCGGCTT
647 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCTCTCATTTCGTCGGTTGGCTT
* * * * * * *
11139446 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGTCTGGACCAAGGGTTGTGGCAGCAGGATTGA
712 AGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGCAGGATCGA
* *** * * * * *
11139511 CAGC-TCATAGAGGGGGACCCAACCAATCCCTAGCTTGTGCATCCTGCCCCTCTGGCCGGCTGGG
777 CAACATC--AGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAG
* * * *
11139575 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGTCATATGGAGTTCATTCCTAGTCTAA
839 TGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
11139633 GCATACGTAGTTCATTCCCAATTTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATATTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
11139698 CTCAGGCATGTGCTGGTGCTGTATTTTTCTTCACTGGGGCACCATCACCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCA-TGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * *
11139763 ACCTGACTGGCGACATTGAGGTTTCGATGATTGAGGGGGCCGGGGGGTGTGCGCACATGATGTGT
129 ACCTGACCGGCGGCATTG-GGTTTCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
11139828 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACT
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
11139893 CCCCCTTAAAGAGCATTTCAGATTTTAGAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
**
11139958 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTTGTTTTTAGCTGAATATTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT-TTTTTGT
*
11140023 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAA
386 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** *
11140088 TTTT-AAAAATCCCAAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
451 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
11140152 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
11140217 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTCCGC
581 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
11140282 ATCCCGTCTCTCTGGCCGACGGAGTGCCCGCCCGCCCGCCCGTCCTCTCATTTCGTCGGTTGGCT
646 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCTCTCATTTCGTCGGTTGGCT
* *** * *
11140347 TAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTGCGGTAGCAGGAACG
711 TAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGCAGGATCG
* * *
11140412 ACAACATGCAGAGTGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCATCTGGCCGGCTAAG
776 ACAACAT-CAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCC-TCTGGCCGGCTGAG
* * ** * *
11140477 TGCCCGCACGCTCGTTTCATTAGTTGACTTGGGCATACGAAGTTCATTCCCAGTCTAA
839 TGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
11140535 G-AT-C--AG----------AT-T--GAT---CC--A---AGGGTTGCGGTAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
11140575 TCGGGCATCTGCTGGTGCTGCA--CTT-TTCAT-------CGT---CGGAGCATC-TCCGAAGAA
66 TCGGGCATGTGCTGGTGCTGCATTTTTCTTCATGGGGCACCATCACCGGAGCATCGT-CGGAGAA
* * * *
11140626 CCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGTGCC--GAGG-G-G-G-----G-TGTGCG
130 CCTGACCGGCGGCATT-GGGTTTCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCG
* *
11140680 ATGGGTGCTGGTACTT-GCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
11140744 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
11140809 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCACGTTTTTAGCTGAATTGTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT-TTTTGTG
* *
11140874 CATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATT
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
*
11140939 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCTTGC
452 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
11141004 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
11141069 GGCATGCAGAAATATGAAGATGTGCCCAAACCTACCTACCACCCTATCTATCCACGGCTTGCGCA
582 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
11141134 TCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGTCCACTCATTTCATCAGTTGGCTT
647 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCTCTCATTTCGTCGGTTGGCTT
* * * * * * *
11141199 AGGCATAC-GAAGTTCATTCCCAGTCTCAGATTAGACCCGATCAAGGGTTGTGACAGTAAGATCG
712 AGGCATACAG-AGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGCAGGATCG
* * * * *
11141263 GCAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGTGCATCCCGCCC-CT--CTGGC--A--
776 ACAACA-TCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGT
* * *
11141321 -CTCGCACACTCGTATCGTGGGTTGACTTAGGCATACGGAGTGT-ATTCCCAGTCTCA
840 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGT-TCATTCCCAGTCTAA
* * * * *
11141377 GCATACGGACTTCATTCCCAGTCTAGGATCAGACCAGACCGAGGGTTGCGACAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * *
11141442 CTTGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCATCGGAGA
65 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCA-TGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * * * * ** * *
11141507 ACCTGATCGGCAGCTTTGGGGTTCTAGCGTTTGGGGGGGCCAGGGGTTTGTCCGCACATGATATG
129 ACCTGACCGGCGGCATTGGGTTTCGA-CG-ATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
11141572 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
11141636 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCCGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11141701 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTG
* * * * *
11141766 TGCATACCAAAAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
385 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
11141831 ATTTTAAAAAATCCTGAACTGTAAAAAG-TTTCAAAATTCATGAAAAATAGAAAACGAGTCGTCT
450 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA-TCATGAAAAATAGAAAACGAGTCGTCT
* * *
11141895 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAGGCCATAAAAATGGT
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * * *
11141960 ATTGGCATGAAAAAATATGAAGAGGTGCCTAAACCCACCTACCA-TCTATCGATGCATGACTTGC
579 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * ** * * *
11142024 GCGTCCCGTCTCTTCTGGTCG--TTATTGCCCGCCGGGGCGCCTGT--TCGCTTTTCGAT-GGTT
644 GCATCCCGTCTC-TCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCTCTCATTTCG-TCGGTT
* * *
11142084 -GCTTAGGCATTACAGAGTTCATTCCCAATCTTAAGATTAGACTC-GACCGAGGG-AGC-GCAGC
707 GGCTTAGGCA-TACAGAGTTCATTCCCAGTC-TAAGATTAGAC-CGGACCAAGGGTTGCGGCAGC
*
11142145 A-GATCGTAGC-ACAT-AGA--GGGACCAGGTCGATCCCC-GACTTGCGCATCCCGCCCTCTGGC
769 AGGATCG-A-CAACATCAGAGGGGGACCCGGTCGATCCCCAG-CTTGCGCATCCCGCCCTCTGGC
**
11142204 CGGCTGAGCCACCCGCACACTC-TTTCGT--G-TGACTTA--CA-ACGGA-TTCATTCCCAGTCT
831 CGGCTGAG-TGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
11142261 AA
895 AA
* * * *
11142263 GCATA-GGATTTTATTCCC-AGCTAAGAT--ACCAGA--GA-GGTTACGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * *
11142321 TCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGTACCATCATCGGAGCATTGCCGGAGAA
66 TCGGGCATGTGCTGGTGCTGCATTTTTCTTCAT-GGGGCACCATCACCGGAGCATCGTCGGAGAA
* * * * *
11142386 CCTGACCGGCGGCATTGGGCTTCTGGCAATCGGGGGGGCCGGGGGGGTGTGCACACATGACGTGC
130 CCTGACCGGCGGCATTGGGTTTC-GACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* * ** * * * *
11142451 AATGGGTGCTGGTACTTGGCCTTTATATTTTCCCCTTATCCCTTATCAAACTTCAAGAACTCACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
11142516 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
11142581 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCACGTTTTTAGCTGAATTGTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT-TTTTGT
* *
11142646 GCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAT
386 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
11142711 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
451 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
11142776 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* ** *
11142841 TGGCAAGCAGAAATATGAAGATGCCCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCGC
581 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
11142906 ATCCCGTCTTTTTGGCCGGCGTAGTG
646 ATCCCGTCTCTCTGGCCGACGTAGTG
11142932 TACAAGATTT
Statistics
Matches: 2834, Mismatches: 353, Indels: 234
0.83 0.10 0.07
Matches are distributed among these distances:
842 46 0.02
843 3 0.00
844 1 0.00
845 1 0.00
846 1 0.00
847 4 0.00
849 3 0.00
850 230 0.08
851 353 0.12
852 1 0.00
856 1 0.00
857 2 0.00
858 1 0.00
859 4 0.00
860 3 0.00
861 5 0.00
862 41 0.01
863 3 0.00
865 3 0.00
868 39 0.01
870 2 0.00
871 4 0.00
872 1 0.00
873 4 0.00
874 2 0.00
876 41 0.01
877 1 0.00
878 149 0.05
879 368 0.13
880 33 0.01
881 18 0.01
882 30 0.01
883 7 0.00
884 7 0.00
885 48 0.02
886 21 0.01
887 9 0.00
888 14 0.00
889 15 0.01
890 37 0.01
891 157 0.06
892 26 0.01
893 43 0.02
894 401 0.14
895 15 0.01
896 1 0.00
898 2 0.00
900 2 0.00
901 6 0.00
902 379 0.13
903 245 0.09
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCTGCATTTTTCTTCATGGGGCACCATCACCGGAGCATCGTCGGAGAAC
CTGACCGGCGGCATTGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCTCTCATTTCGTCGGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAAC
ATCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGTGCCCGC
ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11141393 original size:26 final size:26
Alignment explanation
Indices: 11141351--11141400 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11141341 GTTGACTTAG
*
11141351 GCATACGGAGTGTATTCCCAGTCTCA
1 GCATACGGACTGTATTCCCAGTCTCA
11141377 GCATACGGACT-TCATTCCCAGTCT
1 GCATACGGACTGT-ATTCCCAGTCT
11141401 AGGATCAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGACTGTATTCCCAGTCTCA
Done.