Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 67 of 190
Found at i:11143305 original size:26 final size:26
Alignment explanation
Indices: 11143269--11143318 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11143259 GTCTGATCCT
*
11143269 AGACTGGGAATGAAGTCCGTATGCTG
1 AGACTGGGAATGAACTCCGTATGCTG
*
11143295 AGACTGGGAATGCACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
11143319 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTG
Found at i:11144145 original size:159 final size:159
Alignment explanation
Indices: 11143843--11144211 Score: 400
Period size: 159 Copynumber: 2.3 Consensus size: 159
11143833 ACTCCTTCTG
* **
11143843 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTTAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCGAGGCGCTCAAC
* * * * **
11143908 CAGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGAGTCCCCGTCTACATGTTGTCAATCC
66 CAGCCAGAGGGGCGGGACGCGCAAGCCAGGGATCGATCGAGTCCCCCTCTACATGCTACCAATCC
* * * *
11143973 TGCTTTCGGAACCCTCGGTCCAGTCTAAT
131 TACTCTCGGAACCCTCGATCCAGTCCAAT
* * *
11144002 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGA-TCGTTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-CGAGGCGCTCAA
* * * * * * ** * *
11144066 CCGGCCAGAGGGGTGGGACGGGCAAGCCGGGGATCGATTGGGTCCCCCTCTATGTGCTACCGATT
65 CCAGCCAGAGGGGCGGGACGCGCAAGCCAGGGATCGATCGAGTCCCCCTCTACATGCTACCAATC
* * *
11144131 CTACTACT-GTAACCCTTGATCCGGTCCAAT
130 CTACT-CTCGGAACCCTCGATCCAGTCCAAT
* * * * *
11144161 CCTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGATGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
11144212 GCCGAGCGGG
Statistics
Matches: 173, Mismatches: 35, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
159 171 0.99
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCGAGGCGCTCAAC
CAGCCAGAGGGGCGGGACGCGCAAGCCAGGGATCGATCGAGTCCCCCTCTACATGCTACCAATCC
TACTCTCGGAACCCTCGATCCAGTCCAAT
Found at i:11144870 original size:26 final size:26
Alignment explanation
Indices: 11144834--11144886 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11144824 CTGGTCTGGT
*
11144834 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
11144860 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
11144886 C
1 C
11144887 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:11145764 original size:26 final size:26
Alignment explanation
Indices: 11145728--11145778 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11145718 GGTCCGATCA
*
11145728 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTAGGAATGAACTCCATATGCT
*
11145754 TAGACTAGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCATATGC
11145779 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:11149056 original size:26 final size:26
Alignment explanation
Indices: 11149020--11149072 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11149010 CCGGTCCGAT
*
11149020 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11149046 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11149072 C
1 C
11149073 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11150253 original size:864 final size:861
Alignment explanation
Indices: 11146524--11152801 Score: 6199
Period size: 864 Copynumber: 7.1 Consensus size: 861
11146514 TCAACCGGGA
* * * * * ** *
11146524 CCCCTATGCATGCTGCCGATCCTGCTACTGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAAT
1 CCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
* * * * * * *
11146589 GAACTCCATATGCCTAAGCCAACTGACGAATCGAGCGGGCGGGC---C-GGTACTATGCCGACCA
66 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCA
* * **
11146650 AAGAGACGGTATGTACAAGCCGTGGAT-GATAGGGTGGTAGGTGGGTTT-GGCACATCTTCATAT
131 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
11146713 TTCTGCATGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACAT
196 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * * **
11146778 GAAGTTTCATGGCAAGACGATTCGTTTCCTATTTTTCATGATTTTTGCAACTTTTTGTGGTTCGA
261 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
* * * * * *
11146843 GATTTTTTAAAATTTTTTCCGATGGATTTTTGGTCCCAAGCTTGGTAGACATGATCCTTGTATTT
326 GATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* ** *
11146908 TTCTTGGCATGCACAAAAAAATTCAATTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
390 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
*
11146973 AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
455 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * **
11147038 TGTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
520 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
11147103 CCAGCACCCATCGCACATCATGTGCGCACAACCCTCCCGGCCCCCTCGATTGCCAAAACCCCAAT
585 CCAGCACCCATCACACATCATGTGCGCAC-ACCC-CCCGGCCCCC-CGATCGCCAGAACCCCAAT
* *
11147168 GCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
647 GCCGTCGGTCAGG-T-T----C--T--TCTGGCGATGGTGCCCCGACGAAGAAAAAT---G---C
* *
11147233 AGCACTTGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAA
696 AGCA-----CC-AG--CA-CA--TGC--CCG--AGCC-C-A-GCAG-CCGATCTTAGACTGGGAA
* * *
11147298 TGAACTCCGTATGCTTAGATTGGGAATGAACTCATATGCCTAAGTCAACCCATGAAACGAAGCGT
742 TGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACG-AGCGT
* ** * * * **
11147363 GCAGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAAGTC
806 GCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTC
* * ** * * * * ** *
11147419 CCCCT-TGTGATACTATCGATCCGGCT-ATCACAACCCTCGGTCTGGTCTGATCCTAGACTGGGA
1 CCCCTCTGCG-TGCTGCCGATCCTGCTGCT-GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGA
* * * * * * *
11147482 ATGAACTCTGTATGCCTAAGCCAACCGA-TAAA--A-CGAGCGGGCAGGCGGGCATTACGCCGAC
64 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGC
*** * *
11147543 CAGAGAGACGGGATAAACAGGCCGTGGATCGATAGGGGGGTAGGTGGGTTTAGGCACATCTTCAT
129 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * * * *
11147608 ATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTTCAATGGTCCCTTAATCCTTAAC
194 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
11147673 GTGCAGTTTCATGGCAAGACGACTCATTTTCTAATTTTCATGATTTTTGAAACTTGTTACGGATC
259 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* ** *
11147738 -AGAATTTTTTAAAATTTTTTTGGAAGGATTTTTCACCCCAAACTTGGTAGATGTGATCCTTGTA
324 GAG-ATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
11147802 TTTTTTTTGGCATGCATAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
387 TTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
* * * * *
11147867 TTGAAAAAAGTGTCCCTATTTGAGACACTTTAATGGCTACTGGCAACAAACTTGTAAAATGTCAA
451 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
11147932 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCA
516 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
11147997 AGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCAATCGCCAGAACCCGA
581 AGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCAGAACCCCA
* * * *
11148062 ATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACAAAGAAAAATACGGCA
645 ATGCCGTCGGTCAGGTTCTTC--TG--G---C---GATGGTGCCCCGACGAAGAAAAATGCAGCA
* * ** ** ***
11148127 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCA-C-AACCCTCAGTCCG-A-TCCG-AT-CTTAG
700 CCAGCACATGCCCGAGCCCAGCA---GC--CGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* **
11148186 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGTTCAGCCGGCC
760 ACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCC
* * *
11148251 AGAAGGGCGGGATGCACAAGTCGGGGATCGATGGGGTC
824 AGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTC
* * * * **
11148289 CCCCTCTGCGTTCTGTCGATCCTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGA-TAGGGAA
1 CCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACT-GGGAA
* *
11148353 TGAACTCCGTATGCCTAAGCCAACTGATGAAACGA----GCGGGCGGGCGGGCACTACGTCGGCC
65 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCC
*
11148414 AGAGAGACGGGATGCGCAA-ACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
130 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
** * * *
11148478 TTTCTATATGTGCCAATGCCATTTTTGTGGCTTGCAAATTCATACTATGGTCCCTTAAGCCTTCA
195 TTTCTGCA--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
11148543 CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
258 CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
* * * *
11148608 CCAGATTTTTT--AA-----TAGATGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
323 CGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * **
11148666 TTTTCTTGGCATGCACAAAAACATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGCAACCATTT
388 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA-TT
11148731 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
452 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * * * *
11148796 TGCTCTTTAAGGAGGTATGAGTTCTCAAGGTTTGATGAGAGATGGGGGGCCAATATAAGGACCAA
517 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
11148861 GTACCAGCACCCATCGCACATCATGTGCGCATACCCCCCCGGCCCCCCGGATCGTCGGAACCCCA
582 GTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCCCC-GATCGCCAGAACCCCA
* * ***** * * * *
11148926 ATGCCGTCGGTCAGGTTC-TCCGGCGATGCTAAATGTGACTGCAG-CACATGCCCGAGC-CTAGC
645 ATGCCGTCGGTCAGGTTCTTCTGGCGATGGT-GCCCCGAC-GAAGAAAAATG--C-AGCACCAGC
** * * * *
11148988 ATGTGGTGCCAC-AACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
705 A---CATGCC-CGAGCCC--AG--CAG-CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* *
11149052 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCACTCAGCCGGCCA
761 CTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCA
* * *
11149117 AAGGGGCGGGATGCACAAGTCGGGGACCGATCGGGTC
825 GAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTC
* * * * * *
11149154 CCCCTCTGTGTGCTGCCGATCCTGCTGCTGTAACCCTCTGTCTGATCCAATCTAAGACTGGGAAT
1 CCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
* *
11149219 GAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGTGGGCGGGC-CTTACGTC
66 GAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGCGGGCAC-TACGTC
* * * * * *
11149283 GACCAGAGAGGCAGGATGTGCAAGTCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTT
126 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
11149348 CATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTT
191 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * **
11149413 CACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTATAG
256 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * ** * *
11149478 TTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTCTCCCCAAACTTTGTAGACATGATCCTTG
321 TTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * * *
11149543 TGTTTTTGTTGCCATGCACAAAAACATTCAGCTAAAAACTTAAAGTGTACAATATTTTGTGACCA
385 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
* * * **
11149608 TTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTGCTGGCAGCAAACCTATAATGTCTCA
450 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
11149673 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCC
515 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
** * *
11149738 AAGTACCAGCACCCATCACACATCATGTGCAAACACCCCCCGGCACCCCCGATCGTCGGAACCCC
580 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGC-CCCCCGATCGCCAGAACCCC
* *
11149803 AATGCCG-CTGGTCAAGTT-TTCTGGCGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACA
644 AATGCCGTC-GGTCAGGTTCTTCTGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACA
** *
11149866 TGCCCGAGCCCAGCAG-CGATCTTAGTTTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
708 TGCCCGAGCCCAGCAGCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
11149930 TTCGTATGCCTAAGTCAACACACGAAACGAGTGTACGGGCACTCAACCGGCTAGA-GGGCGGGAT
773 -TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGAT
* * * *
11149994 -TAGCAAGCCGGGGATCGGTTGGGTT
837 GCA-CAAGCCGGGGATCGATCGGGTC
* * * * ** *
11150019 CTCCTCTGTGTGCTGCTGATCCTACTG-TCGCAACCCTCGGTCCAATCCGAT-TTAGACTGGGAA
1 CCCCTCTGCGTGCTGCCGATCCTGCTGCT-GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAA
* *
11150082 TGAACTCCGTATGCCTAAGCCAACCGACGACACGAGCGGGGGGACGGGCGGGCGGGCACTACGCC
65 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---GGG-CGGGCGGGCGGGCACTACGTC
* *
11150147 GGCCAGAGAGACAGGATGCTCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
126 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
11150212 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
191 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* ** ** *
11150277 CCCGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAAGG
256 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* *
11150342 TTTGGGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
321 TTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * *
11150407 TATTTTTGTTGCCATGCTCAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
385 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
* *
11150472 ATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCA
450 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
11150537 AATGCTATTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
515 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
11150602 AAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCATAACCCC
580 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCAGAACCCC
*
11150667 AATGCCG-CAGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCCTGACGAAGAAAAATACGG
644 AATGCCGTC-GGTCAGG-T-T-C-----T--TCTGGCGATGGTGCCCCGACGAAGAAAAAT---G
* * *
11150731 CACTAGCACATGCTCGAGCCCAGTGTGTGCTGCCGCAACCCTCAGACTGGTCCGATCTTAGACTG
695 --C-AG--CA--C-C-AGCACA-----TGC--CCG--AGCC-CAG-C-AG-CCGATCTTAGACTG
* * * *
11150796 GGAATGAACTCCGTATGCTTAGATTGGGAAAGTACTCTGTATGCCTAAGTCAACCCATGAAACGA
738 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGA
* * * *
11150861 GCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCAGGTC
802 GCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTC
* * * * * * * * *
11150921 CCTCTCTGCGTGCTACCGGTCTTGCTGCCGCAACCTTCAGTCCTGTCCAATCTTAGACTAGGAAT
1 CCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
* *
11150986 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGTGGGCACTACGTCGGCCA
66 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCA
*
11151051 GAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
131 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * *
11151116 TTCTGCATGCTAATGCCATTTTTATGGCTTGTAAATTCATTCAATGGTCCCGTAGGCCTTCACGT
196 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * ** *
11151181 GAAGTTTCATGGCAAGACGACTCCTTTTCAATTTTTCACAATTTTTGAAACTTTTTACGGCTCGA
261 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
*
11151246 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
326 GATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * ** * * *
11151311 TTGTTGGCATCCACAAAAACATTCAGCTAAAAACTTGAAGTTTCCAAGGTTTTGTGACCATTTAG
390 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT-G
* ** *
11151376 AAAAAAGTGTCCCCATTTCGAAACACTTTAACAGCTACTGGCAGCAAACCTGTAAAATCTCCAAT
454 AAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
11151441 GCTCTTTAA-GGGGTGTGAGTTCTCAA-G--T-CTGAGGGATA--GGGCCAATATAA-GGCCAAG
518 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
** * * * * *
11151498 TACTTGCA-CCATCACACATCATGTGTGCACACCCCCCGGCCCCTCGATTGTCGGAA--CCAATG
583 TACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCAGAACCCCAATG
* * * *
11151560 CCG-CAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGGCCCGACGACAGAAAAATGCGGCACC
648 CCGTCGGTCAGGTTCT-------T-CT--GGCGATGGTGCCCCGACGA-AGAAAAATGCAGCA-C
* * *
11151624 AATACATGCCTGACTCAGTATGTGCTGCTCGCACCCTCGGTCCAGTCTGATCTTAGACT--G-A-
701 ----CA-G-C--A--C---A--TGC--C-CG-AGCC-CAG--CAG-CCGATCTTAGACTGGGAAT
* * *
11151685 GAACT-CATATTGCTTAGTTACGATGCGGATTCCTAATCAAGCTCGATCTGCCCTATAGATCAAC
743 GAACTCCGTA-TGCTTAG--AC--TG-GG------AATGAA-CTCG-TATG-CCTA-AG-TCAAC
** * * *
11151749 GGAC-AAACGAGACGCTG-GGCATATCTATCTACACGGCATCAGCGGGCCAGTGGGGGCGAGATG
791 CCACGAAACGAG-CG-TGCGG----GC-A-CT-CA--G---C--C-GGCCAG-AGGGGCGGGATG
* *
11151812 CACAAGTCAGGGATC-AGTCGGGTC
838 CACAAGCCGGGGATCGA-TCGGGTC
* * * * * *
11151836 CCCCTCTGCATGCTGCCAATCCTGCTACTGTAACCCTTGATCCGGTCCAATCTTAGACTGGGAAT
1 CCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
** * * *
11151901 GAACTCCGTATGCCTAAGCCAACTAACGAAACGAGCGGGCGGACGGGCTGGCGGGCACTATGTCA
66 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGGCGGGCGGGCACTACGTCG
* * *
11151966 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTT-GGTTACATATT
127 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-CACATCTT
**
11152030 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
191 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * * **
11152095 CATC-TGAAGTTTAATGGGAAGATGACTCGTTTTCTATTTTTCATGATTTTGGAAACTTTTTGTG
256 CA-CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * *
11152159 GTTCTAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATACTTG
320 GTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
11152224 TATTTTTGTTGGCGT-CAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
385 TATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
*
11152288 ATTTGAAAAAAGTG-CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
449 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * ** * *
11152352 AAATTCTCTTCACA-GGGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAGAG
514 AAATGCTCTTTA-AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*
11152416 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCAGAACC
578 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGCCAGAACC
* * * * * * *
11152481 TCAATGTCGTCGTTCTGGTTC-TCCGACGATAGTGCCCCGACGAAGAAAAATG--GCACCAGCAC
642 CCAATGCCGTCGGTCAGGTTCTTCTGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCAC
*
11152543 ATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTGCAATCCTAGACTGGGAATGAA-
707 ATGCCCGAGCCCAGCA---------G-----C-C-G---A-T-C--T--TAGACTGGGAATGAAC
* * *
11152607 TACCGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGG
747 T-CCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * ** * *
11152672 GCGCTCATCTGGCCAGAAGGGCGGAATGGGCAAGCTGGGGATC-AGTCGAGTC
810 GCACTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGA-TCGGGTC
* * * ** ** *
11152724 CCCCTCTGTGTGCTGTCGATCCTACTGCCACAACCCTCGGTCCGGTCTGATCTTAGAATGGGAAT
1 CCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
*
11152789 GAACTCTGTATGC
66 GAACTCCGTATGC
11152802 TTAGACTGGG
Statistics
Matches: 4529, Mismatches: 604, Indels: 507
0.80 0.11 0.09
Matches are distributed among these distances:
853 5 0.00
854 6 0.00
855 2 0.00
856 7 0.00
857 2 0.00
859 11 0.00
860 5 0.00
861 8 0.00
862 43 0.01
863 219 0.05
864 592 0.13
865 256 0.06
866 91 0.02
867 1 0.00
868 2 0.00
869 50 0.01
870 179 0.04
871 151 0.03
872 137 0.03
873 42 0.01
874 60 0.01
875 39 0.01
876 5 0.00
877 11 0.00
878 50 0.01
879 159 0.04
880 93 0.02
881 6 0.00
882 3 0.00
883 8 0.00
884 16 0.00
885 7 0.00
886 8 0.00
887 6 0.00
888 146 0.03
889 29 0.01
890 6 0.00
891 23 0.01
892 33 0.01
893 15 0.00
894 25 0.01
895 114 0.03
896 95 0.02
897 205 0.05
898 218 0.05
899 328 0.07
900 46 0.01
901 136 0.03
902 64 0.01
903 51 0.01
904 12 0.00
905 12 0.00
906 7 0.00
907 6 0.00
908 8 0.00
909 3 0.00
910 1 0.00
911 2 0.00
913 3 0.00
914 10 0.00
915 167 0.04
916 34 0.01
917 33 0.01
918 103 0.02
919 220 0.05
920 13 0.00
922 12 0.00
923 12 0.00
924 33 0.01
925 9 0.00
927 7 0.00
928 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (861 bp):
CCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCA
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
GATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCAGAACCCCAATGCCG
TCGGTCAGGTTCTTCTGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAG
CCCAGCAGCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGC
CTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
GGGGATCGATCGGGTC
Found at i:11150816 original size:26 final size:26
Alignment explanation
Indices: 11150787--11150839 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11150777 CTGGTCCGAT
*
11150787 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* * *
11150813 CTTAGATTGGGAAAGTACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
11150839 C
1 C
11150840 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:11152628 original size:26 final size:26
Alignment explanation
Indices: 11152592--11152642 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11152582 AGTGCAATCC
*
11152592 TAGACTGGGAATGAA-TACCGTATGCT
1 TAGACTGGGAAAGAACT-CCGTATGCT
11152618 TAGACTGGGAAAGAACTCCGTATGC
1 TAGACTGGGAAAGAACTCCGTATGC
11152643 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAAAGAACTCCGTATGCT
Found at i:11152804 original size:26 final size:26
Alignment explanation
Indices: 11152775--11152827 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11152765 CCGGTCTGAT
11152775 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
*
11152801 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
11152827 C
1 C
11152828 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGTATG
Found at i:11152912 original size:185 final size:185
Alignment explanation
Indices: 11152569--11152978 Score: 486
Period size: 185 Copynumber: 2.2 Consensus size: 185
11152559 TGTGCTGCTG
* * *
11152569 CAACCCTCGGTCCAGTGCAATCCTAGACTGGGAATGAA-TACCGTATGCTTAGACTGGGAAAGAA
1 CAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTACCGTATGCTTAGACTGGGAAAGAA
* *
11152633 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCATCTGGCCAGAAGGGCGGAA
65 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGGCCAGAAGGGCGGAA
* *** * **
11152698 TGGGCAAGCTGGGGATCAGTCGAGTCCCCCTCTGTGTGCTGTCGATCCTACTGCCA
130 TGCGCAAGCCAAGGATCAGTCGAGTCCCCCTCTATGTGCTACCGATCCTACTGCCA
* * *
11152754 CAACCCTCGGTCCGGTCTGATCTTAGAATGGGAATGAACT-CTGTATGCTTAGACTGGGAATGAA
1 CAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTACCGTATGCTTAGACTGGGAAAGAA
* * * * *
11152818 CTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGG-GACTCAACCGGCCAGAGGGGTGGG
65 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCG-CTCAACCGGCCAGAAGGGCGGA
* * * ***
11152882 ATGCGCAAGCCAAGGATC-GATCGGGTCCCCCTTTATGTGCTACCGATCCTGCTGTTG
129 ATGCGCAAGCCAAGGATCAG-TCGAGTCCCCCTCTATGTGCTACCGATCCTACTGCCA
* * *
11152939 TAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACT
1 CAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACT
11152979 TCATATGCCT
Statistics
Matches: 190, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
184 3 0.02
185 185 0.97
186 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (185 bp):
CAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTACCGTATGCTTAGACTGGGAAAGAAC
TCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGGCCAGAAGGGCGGAAT
GCGCAAGCCAAGGATCAGTCGAGTCCCCCTCTATGTGCTACCGATCCTACTGCCA
Found at i:11157323 original size:26 final size:26
Alignment explanation
Indices: 11157286--11157364 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
11157276 CCGGTTTGAT
*
11157286 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11157312 TTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11157338 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11157364 C
1 C
11157365 CTATGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11157581 original size:159 final size:158
Alignment explanation
Indices: 11157338--11157705 Score: 463
Period size: 159 Copynumber: 2.3 Consensus size: 158
11157328 ACTCCGTATG
* * * * *
11157338 CTTAGACTAGGAATGAACTCCGTATGCCTATGTCAACCCACAAAATGAACATGCGGGTGCTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTCAGC
* * *
11157403 AGGCCAGAAGGGCGGGATGCGTAAGCCAGGGATTC-G-CTGGGTCCCCTTATGCGTGCTACCGAT
65 AGACCAGAAGGGCGGGATGCGCAAGCCAGGGA-TCAGTC-GGGTCCCCCTATGCGTGCTACCGAT
*
11157466 CCTGTTGCCGCAACCCTCAGTCCGGTTC-AAT
128 CCTGTTGCCGCAACCCTCAGTCC-GATCGAAT
*
11157497 CTTAGACTCGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTCAGC
* * * * **
11157562 CGACCAGAGGGGTGGGATGCGCAAGCCAGGGATCAGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
65 AGACCAGAAGGGCGGGATGCGCAAGCCAGGGATCAGTCGGGTCCCCCTATGCGTGCTACCGATCC
*
11157627 TGTTGCCGCAACCCTCAGTCCGATCGGAT
130 TGTTGCCGCAACCCTCAGTCCGATCGAAT
* * * * *
11157656 ATTAGACTGAGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGC
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
11157706 CGACAGATGG
Statistics
Matches: 182, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
158 6 0.03
159 175 0.96
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTCAGCA
GACCAGAAGGGCGGGATGCGCAAGCCAGGGATCAGTCGGGTCCCCCTATGCGTGCTACCGATCCT
GTTGCCGCAACCCTCAGTCCGATCGAAT
Found at i:11159853 original size:864 final size:858
Alignment explanation
Indices: 11157471--11160130 Score: 3277
Period size: 877 Copynumber: 3.1 Consensus size: 858
11157461 CCGATCCTGT
* * *
11157471 TGCCGCAACCCTCAGTCCGGTTCAATCTTAGACTCGGAATGAACTCCGTATGCCTAAGTCAACCC
1 TGCCGTAACCCTCGGTCCGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
11157536 ACGAAATGAGCGTACGGGCGCTCAGCCGACCAGAGGGGTGGGATGCGCAAGCCAGGGATC-AGTC
65 ACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGTGAGATGCGCAAGCCGGGGATCGA-TC
* ** * * *
11157600 GGGTCCCCCTCTGCGTGCTGTCGATCCTGTTGCCGCAACCCTCAGTCCGATCG-GATATTAGACT
129 GGGT-CCCCTCTGCGTGCTGTCGATCCTGCTAACGCAACCCTCGGTCCG-GCGTGATCTTAGACT
* * *
11157664 GAGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCCGACAGATGGGCGGGTGGGC-TC
192 GGGAATGAACTCCGTATGCCTAAGCC-A---AC----CGA--CGA-AGATGAGCGGGTGGGCAT-
* * *
11157728 TACGCTGGCTAGAGAGACGGGATACGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCA
245 TACGC-GGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
11157793 CATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
309 CATCTTCATATTTCTA--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
11157858 AGCCTTCACGTGAAGTTTCATGGCAAGACAAC-CAGTTTTCTATTTTTCACGATTTTCAAAACTT
372 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACGATTTTTAAAACTT
* ** * ***
11157922 TTTGCAGTTTCAAATTTTTTAAAATGTTCACGGAAGGA----GGCCCCAAACTTGGTAGACGTGA
436 TTTGCGGTTT-GGATTTTTTAAAATTTTTTTGGAAGGATTTTGGCCCCAAAC-TGGTAGACGTGA
* * * * * * * *
11157983 TCCCTGTATTTTTGTTGGCATTCATAAAAATATTCAGCTAAAAACTCAAAGTGTATAATATTTTG
499 TCCCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTTTAAAAGATTTTG
11158048 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
564 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
11158113 ATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
629 ATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
11158178 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCAGCCCCCCTGATCG
693 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAG--CACA-CCCCCCGGCCCCCCCGATCG
* * * * *
11158243 CCGGAACCCCAAATACCGTCGGTCAGGTTCTCCCGCAATGCTCCGACGATGGTGCCTCGACGAAG
755 CCGGAACCCC-AACACCGGCAGTCAGGTTCTCCCGCAATGCTCCGACGATGGTACCCCGACGAAG
* * * *
11158308 AAAAATACGGCACCAACGCATGCCCGAGCCTAGCATGTGC
819 AAAAATACGACACCAACACATGACCGAGCCCAGCATGTGC
* * *
11158348 TGCCGTAACCCTCGGTCCGGTCTAATCTTAGATTGGGAATGAACTCCGGATGCCTAAGTCAACCC
1 TGCCGTAACCCTCGGTCCGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
11158413 ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGT-AGGATGGGCAAGTCGGGGATTGGTC
65 ACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGTGA-GATGCGCAAGCCGGGGATCGATC
* * * * ** * *
11158477 GAGTCCTCCTCTGCGTGCTGTTGATCCTGCTATCGCAACCCTCGATATGGTC-TGATCCTAGAGT
129 GGGTCC-CCTCTGCGTGCTGTCGATCCTGCTAACGCAACCCTCGGTCCGG-CGTGATCTTAGACT
* * * *
11158541 GGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGACCGAGCGGGCGGGCGGGCGGGCACT
192 GGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-GA-TGA--------GCGGGTGGGCATT
* * * * *
11158606 ACACCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTAC
246 AC-GCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
11158671 ATCTTCATATTTCTATGTACCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAA
310 ATCTTCATATTTCTATG--CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
11158736 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAGTTTT
373 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTT
* *
11158801 TACGGTTTGAGATTTTTTAACATTTTTTTGGAAGGAGTTTTGGCCCCAAACCTGGTAGACGT-AT
438 TGCGGTTTG-GATTTTTTAAAATTTTTTTGGAAGGA-TTTTGGCCCCAAA-CTGGTAGACGTGAT
* *
11158865 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-TTGTAAAAGATTATG
500 CCCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTT-TAAAAGATTTTG
*
11158929 TGACCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
564 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
11158994 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
629 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
11159059 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGG
694 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACCCCCCGGCCCCCCCGATCGCCGG
* * * * ** * *
11159124 AACCCCAACGCCGGCAGTTAGGTTCT-CTGACGATGCTCCGGTGTTGGTACCCCGACGAAGAATA
759 AACCCCAACACCGGCAGTCAGGTTCTCCCG-CAATGCTCCGACGATGGTACCCCGACGAAGAAAA
* * *
11159188 ATGCGACACTAGCACATGACCGAGCCCAGCATGTGC
823 ATACGACACCAACACATGACCGAGCCCAGCATGTGC
** *
11159224 TGCCGTAACCCTCGGTCTTGTCCGATCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCC
1 TGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCC
* * *
11159289 ACGAAACGAGTGTGCAGGCACTCAACCGACCAGAGGGGTGAGATGCGCAAGCCGGGGATCGATCG
65 ACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGTGAGATGCGCAAGCCGGGGATCGATCG
* * * * * *
11159354 GGTCCCCTTCTGTGTGCTGCCGACCCTGCTAACGTAACCCTTGGTCCGGGGTGATCTTAGACTGG
130 GGTCCCC-TCTGCGTGCTGTCGATCCTGCTAACGCAACCCTCGGTCCGGCGTGATCTTAGACTGG
* * *
11159419 GAATGAACTCCGAATGCCTAAGCCAACCGACGAA-ATTAGCGGGTGGGCATTACGTCGGCTTGAG
194 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAGATGAGCGGGTGGGCATTACG-CGGCTAGAG
* **
11159483 AGACGGGATGCTCAAGCCGTGGATCGATAGGGTGAAAGGTGGGTTTAGGCACATCTTCATATTTC
258 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * *
11159548 TACTGCCAATGACATTTTTGTGGCTTGTAAATTGATACAATGGTCCTTTAAGCCTTCACGTGAAG
323 TA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
11159613 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCTGGATT
387 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTT-TGGATT
* * *
11159678 TTTTAAAATTTTTTTGAAAGGATTTTTGGCCCGAAACTGGGTGGACGTGATCCCTGTATTTTTTT
451 TTTTAAAATTTTTTTGGAAGGA-TTTTGGCCCCAAACT-GGTAGACGTGATCCCTGTATTTTTTT
* *
11159743 TGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAA
514 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTTTAAAAGATTTTGTGACCATTTGAAAAA
11159808 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
579 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
11159873 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAAGATAAGGGCCAAGTACTAG
644 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
11159938 CACCCATCGCATATCATGTGAGCACACCCACCCGACCCCCCCGATCGCCGAAACCCC-A-A-TGC
709 CACCCATCGCACATCATGTGAGCACACCC-CCCGGCCCCCCCGATCGCCGGAACCCCAACACCGG
* ** * * * *
11160000 CA--CCGG---TCAGGC--T-CTCCGACGATGGCACCCC-ATCAAAGAAAACTACGGCACCAACA
773 CAGTCAGGTTCTCCCGCAATGCTCCGACGATGGTACCCCGA-CGAAGAAAAATACGACACCAACA
*
11160056 CATGCCCGAGCCCAGCATGTGC
837 CATGACCGAGCCCAGCATGTGC
* * * * * *
11160078 TGTCAG-AACCCTCTGTCCGGTTCGATCTTAGACTGGGAACGAACTTCGTATGC
1 TG-CCGTAACCCTCGGTCCGGTCCAATCTTAGACT-GGAATGAACTCCGTATGC
11160131 TTAGACTGGG
Statistics
Matches: 1549, Mismatches: 189, Indels: 113
0.84 0.10 0.06
Matches are distributed among these distances:
853 1 0.00
854 91 0.06
855 5 0.00
857 2 0.00
858 1 0.00
860 2 0.00
862 5 0.00
863 153 0.10
864 311 0.20
865 28 0.02
867 3 0.00
868 3 0.00
869 3 0.00
872 1 0.00
873 3 0.00
875 10 0.01
876 262 0.17
877 419 0.27
878 6 0.00
880 84 0.05
881 136 0.09
882 19 0.01
883 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (858 bp):
TGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGTGAGATGCGCAAGCCGGGGATCGATCGG
GTCCCCTCTGCGTGCTGTCGATCCTGCTAACGCAACCCTCGGTCCGGCGTGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAGATGAGCGGGTGGGCATTACGCGGCTAGAGAGA
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTTGGATTTTTTA
AAATTTTTTTGGAAGGATTTTGGCCCCAAACTGGTAGACGTGATCCCTGTATTTTTTTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTTTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGAGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAACACCGGCAGTCAGG
TTCTCCCGCAATGCTCCGACGATGGTACCCCGACGAAGAAAAATACGACACCAACACATGACCGA
GCCCAGCATGTGC
Found at i:11160133 original size:26 final size:26
Alignment explanation
Indices: 11160104--11160156 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11160094 CCGGTTCGAT
*
11160104 CTTAGACTGGGAACGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
11160130 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
11160156 C
1 C
11160157 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:11160318 original size:26 final size:26
Alignment explanation
Indices: 11160289--11160341 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11160279 CCGGTTTGAT
* *
11160289 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11160315 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11160341 C
1 C
11160342 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11160408 original size:185 final size:184
Alignment explanation
Indices: 11160084--11160500 Score: 577
Period size: 185 Copynumber: 2.2 Consensus size: 184
11160074 GTGCTGTCAG
* * * *
11160084 AACCCTCTGTCCGGTTCGATCTTAGACTGGGAACGAACTTCGTATGCTTAGACTGGGAATGAACT
1 AACCCT-TGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACT
* * * * *
11160149 CCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCAGGCCAGAGGGGCAGGATG
65 CCGTATGCCAAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACAGACCAGAGGGCCAGGATG
* * **
11160214 TGCAAGCCGAGGATCGACAGGGTCCCCTTTTGCATGCTGCCGGTCCTGCTACCAC
130 TGCAAGCCGAGGATCGACAGGGTCCCCCTCTGCATGCTGCCAATCCTGCTACCAC
*
11160269 AACCCTTAGTCCGGTTTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACT
1 AACCCTT-GTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACT
* *
11160334 CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCAGAGGGCCAGGAT-
65 CCGTATGCCAAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACAGACCAGAGGGCCAGGATG
* * *
11160398 T-CATAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCAC
130 TGC--AAGCCGAGGATCGACAGGGTCCCCCTCTGCATGCTGCCAATCCTGCTACCAC
* * *
11160454 AACCCTCGGTCCGGTCTGATCTTATACTGGGAATGAACTCCGTATGC
1 AACCCT-TGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGC
11160501 CTAAGCCAAC
Statistics
Matches: 205, Mismatches: 23, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
183 1 0.00
184 2 0.01
185 202 0.99
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
AACCCTTGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTC
CGTATGCCAAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACAGACCAGAGGGCCAGGATGT
GCAAGCCGAGGATCGACAGGGTCCCCCTCTGCATGCTGCCAATCCTGCTACCAC
Found at i:11161216 original size:26 final size:26
Alignment explanation
Indices: 11161187--11161236 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11161177 CCAGTCCGAT
*
11161187 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
11161213 CTTAGACTGGGAAGGAACTCCGTA
1 CTTAGACTGGGAAGGAACTCCGTA
11161237 CGCCTCAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:11162124 original size:26 final size:26
Alignment explanation
Indices: 11162088--11162140 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11162078 CAGGTTTGAT
11162088 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
11162114 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
11162140 C
1 C
11162141 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:11162302 original size:901 final size:898
Alignment explanation
Indices: 11160286--11163067 Score: 4155
Period size: 901 Copynumber: 3.1 Consensus size: 898
11160276 AGTCCGGTTT
* *
11160286 GATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * ** *
11160351 CCCACGAAACGAGCATGCGGGCGCTCAACCGACCAGAGGGCCAGGATTCATAAGCCGAGGATC-G
66 CCCACGAAACGAGCGTGCGTGTGCTCAGCCGGCCAGAGGGGCGGGATTCGCAAGCCGGGGATCAG
* *
11160415 ACCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTATA
131 -TCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGA
* *
11160480 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC--GGGCGGGCGGGCAGGCACT
195 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGGCGGGCGGGCACT
* ** * * *
11160543 ATGATGGCCAGAGAGACAGGATGCGCATGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
260 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
11160608 ATCTTCATATTTCTGCGTGCCAGTGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAA
325 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
11160673 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCAATTTTTCATAATTTTTGAAACTTTT
390 GCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTT
* * * * * *
11160738 TACGGTTCGAGATTTTTT-TAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACATGA
455 TACGGTTTGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * * * *
11160802 TCCTTGTATTTTTTTTGTATGCCCAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTCTAT
520 TCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
11160867 GACCATTTGAGAAAAA-TGTCCCCA-TTCTAGACACTTGAATGGCTACTGGCAGCAAACCTGTAA
585 GACCTTTTGA-AAAAAGTGTCCCCATTTC-GGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
11160930 AATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAAG-GGGCCAATA
648 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT-AGTGGGCCAATA
* * * **
11160994 TAAGGGCCAGGTACCAGCACCCATTGCACATCATGTGCGCACACCCCTCGGCCCTTCCGATCACC
712 TAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGTC
** * ** * *
11161059 GGAACCCCAATGCCACCGATCAGGTTCTCCGGCAATGCT-TCGGTGACGGTGCCCCGACAAAGAA
776 -GAACCCCAATGCCGTCGAT-AGGTTCTCCAGCAATGCTCT-GACGACGATGCCCCGGCAAAGAA
*
11161123 AAATGTC-GCACCAACACATACCCGAGCCCAGCATGTGTTGTCGCAACCCTCGGTCCA-GTCC
838 AAATG-CGGCACCAACACATGCCCGAGCCCAGCATGTGTTGTCGCAACCCTCGGT-CAGGTCC
* * * *
11161184 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAGGAACTCCGTACGCCTCAGTCAT
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
11161249 CCCATGAAACGAGCGTGCGTGTGCTCAGTCGGCCAGAGTGGCGGGATGCGCAAGCCGGGGATCAG
66 CCCACGAAACGAGCGTGCGTGTGCTCAGCCGGCCAGAGGGGCGGGATTCGCAAGCCGGGGATCAG
* * * * * * ** * *
11161314 TCGGGTCCCCCTTTACGTACTGTCGATCCTACTGCTGCAACCTTCGGTCTGGTCTGATCTTAGAC
131 TCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGAC
*
11161379 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGGTGGGCAC
196 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-GGGCGGGCGGGCGGGCAC
* *
11161444 TACGCCGGCTAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
259 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
11161509 CATCTTCATATTTCTGCATACAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
324 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
11161574 AGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTT
389 AGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTT
11161639 TTACGGTTTGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
454 TTACGGTTTGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
11161704 ATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
519 ATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
11161769 TGACCTTTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
584 TGACCTTTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
11161834 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGTGGGCCAATATA
649 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGTGGGCCAATATA
11161899 AGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAA
714 AGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAA
11161964 CCCCAATGCCGTCGAGTAGGTTCTCCAGCAATGCTCTGACGACGATGCCCCGGCAAAGAAAAATG
779 CCCCAATGCCGTCGA-TAGGTTCTCCAGCAATGCTCTGACGACGATGCCCCGGCAAAGAAAAATG
* **
11162029 CGGCACCAACACATGCCCGAGCCCAGCATGTGTTGTTGCAACCCTCGGTCAGGTTT
843 CGGCACCAACACATGCCCGAGCCCAGCATGTGTTGTCGCAACCCTCGGTCAGGTCC
*
11162085 GATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
11162150 CCCACGAAAGGAGCGTGTGTGTGCTCAGCCGGCCAGAGGGGTGGGATTCGCAAGCCGGGGATCAG
66 CCCACGAAACGAGCGTGCGTGTGCTCAGCCGGCCAGAGGGGCGGGATTCGCAAGCCGGGGATCAG
* * * * * ** *
11162215 TCGGGTCCCTCTCTGTGTGTTGCCAATCTTGCTACCACAACCCTCGGTCCAATCCGATCTTAGAC
131 TCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGAC
* * * * * *
11162280 TAGGAATGAACTCTGTATGCCTAAGGGC-ACCGACGAAACCAGCAGGCGGGCGGGTGGGCGGGCT
196 TGGGAATGAACTCCGTATGCCTAA-GCCAACCGACGAAACGAGC-GG-GGGCGGGCGGGCGGGCA
* * *
11162344 CTACGCCGGCCAGAGAGACGTGATGCTCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGC
258 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
11162409 ACATCTTCATATTTCTGTGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
323 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
11162474 AAGCCATCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTT
388 AAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTT
*
11162539 TTTACGGTTTGGGATTTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
453 TTTACGGTTTGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
11162604 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTT
518 GATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
11162669 TGTGACCTTTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTA
582 TGTGACCTTTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTA
11162734 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGTGGGCCAATA
647 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGTGGGCCAATA
*
11162799 TAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCGGCCCCCCCGATCGTC
712 TAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTC
* * * *
11162864 GAAACCCAATGCCGTCGATTAGGTTCTCCAGCAATGCTCCGACGACGATGCCCTGGCAACGAAAA
776 GAACCCCAATGCCGTCGA-TAGGTTCTCCAGCAATGCTCTGACGACGATGCCCCGGCAAAGAAAA
* * * ** * *
11162929 ATGCGGCACCAACACATGCCCTAGCCCAGTATGTGCTACCGTAACCCTCGGTCTGGTCC
840 ATGCGGCACCAACACATGCCCGAGCCCAGCATGTGTTGTCGCAACCCTCGGTCAGGTCC
* * *
11162988 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACCCCGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
11163053 TCGAGGAAACGAGCG
66 CCCACGAAACGAGCG
11163068 GGCGGGCGGG
Statistics
Matches: 1707, Mismatches: 161, Indels: 27
0.90 0.08 0.01
Matches are distributed among these distances:
898 203 0.12
899 1 0.00
900 3 0.00
901 579 0.34
902 462 0.27
903 456 0.27
904 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGTGTGCTCAGCCGGCCAGAGGGGCGGGATTCGCAAGCCGGGGATCAG
TCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGGCGGGCGGGCACTA
CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTT
ACGGTTTGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCTTTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGTGGGCCAATATAAG
GGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAACC
CCAATGCCGTCGATAGGTTCTCCAGCAATGCTCTGACGACGATGCCCCGGCAAAGAAAAATGCGG
CACCAACACATGCCCGAGCCCAGCATGTGTTGTCGCAACCCTCGGTCAGGTCC
Found at i:11163020 original size:26 final size:26
Alignment explanation
Indices: 11162991--11163043 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11162981 CTGGTCCGAT
* *
11162991 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACCCCGTATG
11163017 CTTAGACTGGAAATGAACCCCGTATG
1 CTTAGACTGGAAATGAACCCCGTATG
11163043 C
1 C
11163044 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACCCCGTATG
Found at i:11163764 original size:25 final size:26
Alignment explanation
Indices: 11163726--11163777 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
11163716 CTGGTCCGAT
*
11163726 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGAGAATGAACTCCGTATG
11163751 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
11163777 C
1 C
11163778 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:11164746 original size:381 final size:381
Alignment explanation
Indices: 11164028--11164792 Score: 1117
Period size: 381 Copynumber: 2.0 Consensus size: 381
11164018 GGTGGTAGGT
* *
11164028 GGGTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATCACTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTACGTACCAATGCCATTTTTATCACTTGTAAATTCATACA
* * * * * *
11164093 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAGGATGACTCATTTTTTATTTTTCATAATT
66 ACGCTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGATAACTCATTTTCTATTTTTCACAATT
** *
11164158 TTGGAAACTTTTTACGATTGAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTT
131 TTCAAAACTTTTTACGATTGAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* **
11164223 GGTAGACGTGATCCTTCTATTTTTTTTGGTGTGCACAAAAACATTCAGCTAAAAACTCAAAGTGT
196 GGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGT
*
11164288 ACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAACTGCTACTGGTAGCA
261 ACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAACTGCTACTGGCAGCA
11164353 AAACTATAAAATCTCAAACACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
326 AAACTATAAAATCTCAAACACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
** *
11164409 GGGTTTAGGCACATCTTCATATTTCTACGTACCAATGCCATTTTTATGGCTTTTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTACGTACCAATGCCATTTTTATCACTTGTAAATTCATACA
* *
11164474 ACGCTCCCTTAAGCCTTCACGTGAAGTTTCAT-AGCAAGATAACTCGTTTTCTATTTTTCACGAT
66 ACGCTCCCTTAAGCCTTCACGTGAAGTTTCATGA-CAAGATAACTCATTTTCTATTTTTCACAAT
* * * ** *
11164538 TTTCAAAAGTTTTTGCGGTTTG-GGATTTTTTAACTTTTTTTTGGAAGGAGTTTTGGCCCCAAAC
130 TTTCAAAACTTTTTAC-GATTGAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
11164602 TTGGTAGATGT-ATCCTTGTATTTTTGTTGGCATGCACAGAAAA-ATTCAGCTAAAAACTCGAAT
194 TTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACA-AAAACATTCAGCTAAAAACTCAAAG
* * *
11164665 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAA-TGGCTACTGG
258 TGTACAAGATTTCGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAACT-GCTACTGG
* * **
11164729 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
321 CAGCAAAACTATAAAATCTCAAACACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
11164790 GGG
1 GGG
11164793 ATAGGGGGCC
Statistics
Matches: 342, Mismatches: 37, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
380 75 0.22
381 263 0.77
382 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (381 bp):
GGGTTTAGGCACATCTTCATATTTCTACGTACCAATGCCATTTTTATCACTTGTAAATTCATACA
ACGCTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGATAACTCATTTTCTATTTTTCACAATT
TTCAAAACTTTTTACGATTGAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGT
ACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAACTGCTACTGGCAGCA
AAACTATAAAATCTCAAACACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
Found at i:11165040 original size:26 final size:26
Alignment explanation
Indices: 11165004--11165056 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11164994 CCTGTCCGAT
11165004 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11165030 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11165056 C
1 C
11165057 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11165943 original size:26 final size:26
Alignment explanation
Indices: 11165907--11165959 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11165897 TCAATCCCAT
*
11165907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
11165933 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
11165959 C
1 C
11165960 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:11166375 original size:896 final size:895
Alignment explanation
Indices: 11164409--11168679 Score: 5619
Period size: 892 Copynumber: 4.7 Consensus size: 895
11164399 GGTTTGATGA
* * * *
11164409 GGGTTTAGGCACATCTTCATATTTCTACGTACCAATGCCATTTTTATGGCTTTTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * **
11164474 ACGCTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGATAACTCGTTTTCTATTTTTCACGATT
66 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * * ** *
11164539 TTCAAAAGTTTTTGCGGTTTGGGATTTTTTAACTTTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
131 TTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * *
11164604 GGTAGATGT-ATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACTCGAATTGT
196 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
11164668 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
261 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
11164733 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
326 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
11164798 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACACCCCCCCGGCC
391 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGTGCGCACA-CCCCCCGGCC
* * * *
11164863 CCCCCGATCGCCGGAACCCCAAATGCGGCCGGTTAGGTTCTCCCGCGATGCTCC-AGCGATGGTG
453 CCCCCGATCGCCGGAACCCC-AATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTG
* * * * *
11164927 CCTCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTCG
516 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * *
11164992 GTCCTGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGC
581 CTCCAGTCCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* ** *
11165057 CTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGGCGGACAGAGGGGTGGGATGCGCAAGCC
646 CTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCC
* * * *
11165122 GGGGATCAATCGGGTCCCCCTCTGTGTGCTACCGATCCTACTGCCACAACCCTCAGTTTGGT-CA
711 AGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTCAGTCTGGTCCA
* * * *
11165186 GATCTTATATTGGGAATGAACTCCGTATGCTTAAGCCAACCGACAAAACGAGCGAGCGGGCGGGC
776 -ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAA--A-CGA----GCGGGC
* * * * *
11165251 GGGCGGGCACTACACCGACCAGAGAAACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGT
832 GGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
11165315 GGGTTTAAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
11165380 ATGGTCCCTTAGGGCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTACTTTTCACGATT
66 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * **
11165445 TTGGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCTGCAAACTT
131 TTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
11165510 GGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGCG
196 GGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
11165575 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAG
260 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
11165640 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTCCTCGAGGTTTGATGAGGGATAG
325 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
11165705 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCC-GACCC
390 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* **
11165769 CCCGATCGTCAAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
455 CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* ** *
11165834 GGCAAAGAAAAATGCGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCGCAAGCCTCAGCT-
520 GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GCTC
* *
11165898 CAATCCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTA
584 CAGTCCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
11165963 AGTCAACCCATGAAACTGAGCCTGCAGGTGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGG
649 AGTCAACCCACGAAAC-GAGCGTGCAGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCAG
* * * * * * * *
11166028 GGATCGATAGGGACCCCCTTTGCGTGCTGCCGATCCTGCTCCCGCAACCCTCAGTCTGGTCTAAT
713 GGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTCAGTCTGGTCCAAT
*
11166093 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGTACT
778 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACT
11166158 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
843 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
11166211 GGGTTTAGGTACATCTTCACATTTCTGCGTACCAATGCCATTTTTATGGCTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
11166276 ATGGTCCCTTAAGCCTTCATGTCAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCACGATT
66 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** *
11166341 TTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCCAAACT
131 TTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCCAAACT
* * * *
11166406 TGGTAGATGTGATCCTTGTATTTTTGTTGGCAGGCACAAAAAAATTCAGCTACAAACTCGAAGTG
195 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
11166471 TACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
260 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
11166536 CAAACCTGTAAAATCTCAAATGCTCTGTAAGGGGGTGTGAGTTCT-GAAGG-TT--T----GATA
325 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATA
* * * * * * * *
11166593 GGGGGTCAATATAAGGGCTAAGTACCTGCACCAATCACATATCATGTGTGCACACACCCCCTGGG
389 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCC-GGC
* * * * * *
11166658 CCCCCCGATCGCCGGAACCCCAATGTCGTCGGTGAGGTTTTTCGGTGATGCTCCGGCGATGGTGC
452 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
** * * *
11166723 CCCGATGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCGTGTGCTGCCGCAACCCTTGG
517 CCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC----
* *
11166788 TCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCT
578 TC--G--C--TC-----C-----A-G---TCC-CAT-CTTAGACTGGGAATGAACTCCGTATGCT
* *
11166853 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAACCG
621 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCG
* * * ** *
11166918 GCCATAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTTCTATGTGCTATCGATCCT
686 GCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCC-TCTGCGTGCTACCGATCCT
* * * * * ** * * *
11166983 GCTTCCATAGCCCT-TGATCCAGTCCAGTCCTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
750 ACTGCCACAACCCTCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
11167047 CCGACGAAACGAGTGGGCGGGCAGGCGGGCACTACGTCGCCCAGAGAGACGGGATGCGCAAGCCG
814 CCGACGAAACGAGCGGGCGGGCA----GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
11167112 TGGATCGATTGGGTGGTAGGT
875 TGGATCGATAGGGTGGTAGGT
* *
11167133 GGATTTAGGCACATCTTCATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
11167198 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
66 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
*** * *
11167263 TTTGAAACTTTTTACAGTTTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACT
131 TTTGAAACTTTTTGTGGTTTGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
11167328 TGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
195 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
11167392 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAG
260 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
11167457 CAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAG
325 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* **
11167522 GTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTATGCACACCCCGCCTGGCC
390 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CC-GGCC
* * * * *
11167587 CCCCCAATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCC
453 CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * * * * *
11167652 CCGGTGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGT
518 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGCT
* * *
11167717 CCAGTCCTATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCT
583 CCAGTCCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** * *
11167782 AAGTCAACCCACGAAACGAGCGT-AAGGCGATCAGGCGGCCTGAGGGGTGGGATGCGCAAGTCAG
648 AAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCAG
* * ** **
11167846 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTATTGCTGCAACCCTTGGT-TCGGTCCAA
713 GGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTCAGTCT-GGTCCAA
* * * * *
11167910 TCTTAGATTGGGAATGAACTCCGTATGCCCAAGCCAACCGATGAAATGAACGGGCGGGCA--CA-
777 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCAC
*
11167972 -ACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
842 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
11168025 GGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
11168090 ATGGTCCCATAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATT
66 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
11168155 TTTTAAACTTTTTGTTGTTTGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTT
131 TTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
11168220 AGTAGACGTGATCCTTGTATTTATTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
196 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
11168285 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATCGCTACTGGCAGC
261 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
11168350 AAACCTGTAAAGTCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGGA-GAGGGATAG
326 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT-GATGAGGGATAG
* * * *
11168414 GGGGCCGATATAAGGGCCACGTA-CAGCACCCATCGTACATCATATGCGCACACCCCCCGG-CCC
390 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * * *
11168477 TCTGATCGTCGGAGCCCCAATGCC-ACGGGTCAGGTTCT-C--CG--G-T-----GATGGTGCCC
455 CCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
* * * * * * * *** *
11168530 CGGAGAAGAAAAATGTGACACTAGCCCATG-CTGAGCCCAGCATGTGTTGCTTAAACCCTCGATC
519 CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGCTC
* ** * * * *
11168594 CGGTCTGATCTTAGACTGGGAAAGAACTCCGTACGCTTAGACTAGGAATGAACTTCGTATGCCTA
584 CAGTCCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
*
11168659 AGTCAACCAACGAAACGAGCG
649 AGTCAACCCACGAAACGAGCG
11168680 GGCTGACGGG
Statistics
Matches: 2970, Mismatches: 337, Indels: 146
0.86 0.10 0.04
Matches are distributed among these distances:
876 103 0.03
877 33 0.01
882 1 0.00
883 1 0.00
885 2 0.00
887 1 0.00
888 31 0.01
889 53 0.02
890 7 0.00
891 86 0.03
892 487 0.16
893 3 0.00
894 2 0.00
895 3 0.00
896 382 0.13
897 27 0.01
899 1 0.00
900 83 0.03
901 52 0.02
902 74 0.02
903 172 0.06
904 159 0.05
905 7 0.00
906 185 0.06
907 11 0.00
908 210 0.07
912 1 0.00
913 1 0.00
916 3 0.00
917 60 0.02
918 157 0.05
921 150 0.05
922 225 0.08
923 28 0.01
924 3 0.00
927 3 0.00
928 163 0.05
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGCTCCA
GTCCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGA
TCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTCAGTCTGGTCCAATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACTACG
CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
Found at i:11166835 original size:26 final size:26
Alignment explanation
Indices: 11166799--11166877 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
11166789 CTGGTTCGAT
11166799 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11166825 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11166851 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11166877 C
1 C
11166878 CTAAGTCAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11167763 original size:26 final size:26
Alignment explanation
Indices: 11167727--11167779 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11167717 CCAGTCCTAT
*
11167727 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
11167753 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
11167779 C
1 C
11167780 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:11168632 original size:26 final size:26
Alignment explanation
Indices: 11168603--11168652 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
11168593 CCGGTCTGAT
*
11168603 CTTAGACTGGGAAAGAACTCCGTACG
1 CTTAGACTAGGAAAGAACTCCGTACG
* *
11168629 CTTAGACTAGGAATGAACTTCGTA
1 CTTAGACTAGGAAAGAACTCCGTA
11168653 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTACG
Found at i:11169376 original size:26 final size:26
Alignment explanation
Indices: 11169347--11169399 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11169337 CTGGTCCGAT
11169347 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11169373 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11169399 C
1 C
11169400 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11170274 original size:26 final size:26
Alignment explanation
Indices: 11170245--11170297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11170235 CCGGTGCAAT
*
11170245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
11170271 CTTAGATTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
11170297 C
1 C
11170298 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:11170596 original size:163 final size:166
Alignment explanation
Indices: 11170395--11170710 Score: 433
Period size: 163 Copynumber: 1.9 Consensus size: 166
11170385 ACATGCTGGT
* *
11170395 GATCCTGCTACCACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAA
1 GATCCTGCTACCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAA
* *
11170460 GCCAACTGACGAAACGA-T-C-GGGCGGGTGGGCACTACG-TCGGCCAGAGAAACGGGATGCACA
66 GCCAACCGACGAAACGAGTGCGGGGCGGGCGGGCACTACGCT-GGCCAGAGAAACGGGATGCACA
11170521 AGCCGTGGATCAATAGGGTCCCCTTCTACGTGTTGCC
130 AGCCGTGGATCAATAGGGTCCCCTTCTACGTGTTGCC
* ** * *
11170558 GATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCAGTATGCCTAA
1 GATCCTGCTACCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAA
* *
11170623 GCCAACCGATGAAACGAGCGTGCGGGTGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATG
66 GCCAACCGACGAAACGA--GTGC--G-GGGCGGGCGGGCACTACGCTGGCCAGAGAAACGGGATG
* *
11170688 CGCAAGCCGTGGATCGATAGGGT
126 CACAAGCCGTGGATCAATAGGGT
11170711 GGTAGGTGGG
Statistics
Matches: 131, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
163 73 0.56
166 1 0.01
167 1 0.01
171 55 0.42
172 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.31, T:0.20
Consensus pattern (166 bp):
GATCCTGCTACCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAA
GCCAACCGACGAAACGAGTGCGGGGCGGGCGGGCACTACGCTGGCCAGAGAAACGGGATGCACAA
GCCGTGGATCAATAGGGTCCCCTTCTACGTGTTGCC
Found at i:11171337 original size:26 final size:26
Alignment explanation
Indices: 11171308--11171360 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11171298 CCAGTCCGAT
*
11171308 CTTAGATTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
11171334 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
11171360 C
1 C
11171361 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:11172081 original size:26 final size:26
Alignment explanation
Indices: 11172052--11172104 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11172042 TCGGTCCGAT
*
11172052 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11172078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11172104 C
1 C
11172105 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11173531 original size:26 final size:26
Alignment explanation
Indices: 11173494--11173545 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11173484 GTTGACTTAG
*
11173494 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11173520 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11173546 CATCAGACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11174543 original size:505 final size:508
Alignment explanation
Indices: 11173583--11174595 Score: 1543
Period size: 505 Copynumber: 2.0 Consensus size: 508
11173573 CCACATGCTG
* *
11173583 GGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATTGCCAAA
1 GGCTCAGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCAAA
* *
11173648 GAACCTGACCGGCGGCATTGGGGCTCTGGCAATCGGGGGGGCCAGGAGGGGGGTGTGAGCACATT
66 GAACCTGACCGACGGCATTGGGGCTCTGGCAATCGGGGGGGCCAGGAGGGGGGTGTGAGCACATG
* * **
11173713 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
131 ATATGCGATGGGTGCTGGTACTTAACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
*
11173778 CTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTG
196 CTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAATAAAGTGTCTG
* *
11173843 AACTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTT
261 AAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTT
* * * ***
11173908 TTTATGCATGCCAACAAAAATACAAGGATCACCTCTGCCAAGTTTGGGGTGAAAACTCCTTCCAA
326 TTTATGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGGTTGGGACCAAAACTCCTTCCAA
* ** * * *
11173973 AAAATTTTGACAAAACCTCGAACTGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCG
391 AAAATTTTGAAAAAACCTCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
11174038 TCTTGCCATGAATCTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACA
456 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACA
* ** * **
11174091 GGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGGGCATCGTCGGA
1 GGCTCAGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCG-CCAA
* * * *
11174156 A-AACCTGACCGACGGCATTGGGG-TTTCGGCGATCGGGGGGG-C-TG-GGGGGGTGTGTGCACA
65 AGAACCTGACCGACGGCATTGGGGCTCT-GGCAATCGGGGGGGCCAGGAGGGGGGTGTGAGCACA
*
11174216 TGATATGCGATGGGTGCTGGTACTTAACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
129 TGATATGCGATGGGTGCTGGTACTTAACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
* *
11174281 AACTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTC
194 AACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAATAAAGTGTC
* * *
11174346 TGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATT
259 TGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATT
* * *
11174411 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACTTCTACCAAGGTTGGGACCAAAATTCCTTCC
324 TTTTTATGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGGTTGGGACCAAAACTCCTTCC
**
11174476 AAAACAATTTT-AAAAAATTTCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
389 AAAA-AATTTTGAAAAAACCTCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
11174540 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
453 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACA
11174596 AGCCATAAAA
Statistics
Matches: 456, Mismatches: 46, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
505 355 0.78
506 7 0.02
507 3 0.01
508 88 0.19
509 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (508 bp):
GGCTCAGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCAAA
GAACCTGACCGACGGCATTGGGGCTCTGGCAATCGGGGGGGCCAGGAGGGGGGTGTGAGCACATG
ATATGCGATGGGTGCTGGTACTTAACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
CTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAATAAAGTGTCTG
AAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTT
TTTATGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGGTTGGGACCAAAACTCCTTCCAA
AAAATTTTGAAAAAACCTCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACA
Found at i:11175813 original size:26 final size:26
Alignment explanation
Indices: 11175777--11175829 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11175767 GTTGACTTAG
*
11175777 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
11175803 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
11175829 G
1 G
11175830 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:11177793 original size:26 final size:26
Alignment explanation
Indices: 11177756--11177808 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11177746 GTTGACTTAG
11177756 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
11177782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11177808 G
1 G
11177809 ATTAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11178683 original size:26 final size:26
Alignment explanation
Indices: 11178646--11178698 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11178636 GTTCACTTAG
11178646 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
11178672 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11178698 G
1 G
11178699 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11179578 original size:26 final size:26
Alignment explanation
Indices: 11179549--11179601 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11179539 GTTGACTTAG
11179549 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11179575 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11179601 G
1 G
11179602 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11179748 original size:895 final size:890
Alignment explanation
Indices: 11177578--11199045 Score: 19020
Period size: 895 Copynumber: 24.1 Consensus size: 890
11177568 CATACGTAGT
*
11177578 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
1 GCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* *
11177643 CAGACCAAGGGTTGCGGCAGC---A----C-G-A---AGAGGGGGATCCGACCGATCCCCGGCTT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCTT
** * * * * *
11177696 GTTCATCCTGCCCTTCTGGCCAGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* ** * *
11177761 CGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGAACCAAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * * * * *
11177826 GTTCCGACAGCACATGCTGGGCTTGGGCATATGTTGGTGCCACTTTTTTCTTCGTCGGGGCACCA
259 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* **
11177891 TCGTCGGAGCATCGTCGGAGAAACTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGG
324 ---TC--AG---C-TCGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG
* * *
11177956 GTGGTGTGCCCACATGGTGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
379 G-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * ***
11178021 CATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAG-TTTTATTTGTTTG-TCGCCAG
443 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAG
* * * *
11178084 TAGCCATTAACGTGTCTAAAATGGGGACACTTTTTTGAAATAGTCACAAAATCTTGTACACTTCG
507 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
11178149 ATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG---A--TCTACCAAGTTTGG
572 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * **
11178209 GTCCAAAACTCCTTCCAAAAAAATTTTAAAAAAACCCGAACCACAAAAAGTTTCAAAAATCATGA
637 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
*
11178274 AAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
702 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
11178339 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGCGCCTAAACCCACGTACCA
767 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
11178404 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTA--G-TGCCCGCCC
832 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCC
* * * ** * *
11178460 G--C-CCGCTCGTTTTGTCAGTTGGCTTATGCATACGGAGTTCATTCAGAGTCTAATATCAGATC
1 GCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * *
11178522 -GAACAGAGGGTTACAGTAGCAGGATCGGCAACATGCAGAGGGGGACCCAACCGATCCCCGGCTT
66 AG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCTT
* *
11178586 GCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
11178651 CGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * *
11178716 GTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCA
259 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * *
11178781 TCGTCGGAGCATCGTTGGAGAACCTGATCGACAGCATTAGGGTTCCGACGATCGGGGGGGCC-GG
324 ---TC--AGC-TC---GGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGG
*
11178845 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
378 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
11178910 CATCAAACCTCGAGAACTCAC-CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
443 CATCAAACCTCGAGAACTCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
11178974 TAGCCATTAAAGTGTCTCAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
507 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
11179039 AGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTTG
572 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
11179104 GGCCAAAACTCCTTCTGAAAAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCGTGA
637 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
* * *
11179169 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAACGGACCATTGTATGAA
702 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
11179234 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
767 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
11179299 CCCTATCGATCCACGGCTTGCGCATCCCGACCCTCTGGCCGACGTAGTGCTCGCCCGCCC
832 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCT-GCCCGCCC
* * * *
11179359 GCCCGCGCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
1 GCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** *
11179424 CAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACTTGGACTATCCCCGGCTT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC-CCGACGATCCCCGGCTT
* ** * *
11179489 GCGCATCCCGCCCCTTTGGCCAACTGAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
11179554 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* ** * *
11179619 GTTGCGACAGCACATGCTGGGCTCGGGCATGTTTTGGTGTCGCTTTTTTCTTCGTCGGGGCACCA
259 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * *
11179684 TCA-CT-GGAGAACCTGACCAGCGACATTGGGGTTCCGGCGATCGGGTGGGCTGGGGGGCGGTGT
324 TCAGCTCGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATCGGG-GGGC-CGGGGG-GGTGT
11179747 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
385 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
11179812 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACACGTTTGCTG-CAGTAGCCATT
450 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
11179876 AAAGTGTCTGAAATGGGGATCACTTTTTTGAAATGGTCACAACATCTTGTACACGTCGAGTTTTT
515 AAAGTGTCTGAAATGGGGA-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
11179941 AGCTGAA-ATTTTTGTGCATGCCAACAAAAACACAAGGATCACGTCTACCATGTTTGGGGCCAAA
579 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
*
11180005 AATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCT-AAAAGTTTGC-AAAATCATGAAAAAT
644 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-TAAAAAGTTT-CAAAAATCATGAAAAAT
* * * * *
11180068 AGAAAATGAGTTGTCTTGCCATAAAACTTCACGTGAAGGCTTAGGGGACCGTTGTATGAATTTAC
707 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
11180133 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA-CCACCT-GCACCCCT
772 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCT
* *
11180196 ATCGATCCAACGGCTTGC-CAT-CCGAC-CTTTGGCCGACGTAGTGCTCGCCCGCCC
836 ATCGATCC-ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCT-GCCCGCCC
* * * *
11180250 G-CCGCGCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAATTCATTCCCAGTCTAAGATCAGAC
1 GCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * ** *
11180314 CAGACCGAGGGTTGCAGCAGCAAGATCGGCAGGACGCAGAGGGAGACTTGGACTATCCCCGGCTT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC-CCGACGATCCCCGGCTT
* * * * *
11180379 GGGCATCTCACCCCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
11180444 CGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C-----T------GGACCTAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* ** * *
11180483 GTTGCTGCAGCACATGCTGGGCTCGGGCATGTTTTGGTGCCGCTTTTTTCTTTG-CTGGGGCACC
259 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACC
*
11180547 ATCACCGGAGCATCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGTGGGCTGGGG
323 AT---C--AGC-T-CGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATCGGG-GGGC-CGGG
*
11180612 GGCGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCC
378 GG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
11180676 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACACGTTTGCTGCCAG
442 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
11180741 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTG
507 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
11180806 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAGTACAAGGATCACGTTTACCAAGTTTG
572 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTG
* *
11180870 GGGCCAAAACTCCTGCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATG
636 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
*
11180935 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
701 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* ***
11181000 ATTTACAAGCCATAAAAATGGCATTGCCAATTAGAAATATGAAGATGTGCCTAAACCCACCTACC
766 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
11181065 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG--GT-GAAG-TGCCCGCCC
831 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG-TGCTGCCCGCCC
* * * * * * * *
11181122 G--C-CCGCTCATTTTGTCGGTTAGCTTAGGCATACGGAATTAATTCCCAGTCTAAGATCGGGCT
1 GCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *** *
11181184 GGACTGAGGGTTACGGTAGCAGGATCGACAGCACATTGAGGGGGACCCGATCGATCCCTGGCTTG
66 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCTTG
* * * * *
11181249 CGTATCTCGCCCCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATAC
130 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
11181314 GTAGTTCATTCCCAGCCTAAG-AT-C--AG---A----C---C----A---GACC-GA---A-GG
195 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * *
11181353 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTTGGGGCACCAT
260 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-
**
11181418 CGTCGGAGCATGCCGGAGAACCTGACCGAATGCATTGGGGTTCCG-CGATCGGGGGGCCGGGGGG
324 --TC--AGC-T--CGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
* **
11181482 GTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGAACCTTATATTGGCCCCCTATCCCTCAT
381 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * * *
11181547 CAAACCTTGACATCTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTACTGCCAGTAGC
446 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
11181612 CATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTT
511 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
11181677 TTTAGCTAAATTTTTTTATGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCC
576 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
11181742 AAAACTTCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCCTGAAAAA
641 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* *
11181807 TAGAAAACGAGTCCTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG-ATTTA
706 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
11181871 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCT
771 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * **
11181936 ATTGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTA--G-TGCCTACCC
836 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCC
* * ** *
11181988 G--C-CCGCTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATC
1 GCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * ** * * * *
11182050 AGA-CGAGGGTTGCAGAAGCGGGATCGATAGCACACAGAGGGGGATCCCGCCTATCCCCAGCTTG
66 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CCCGACGATCCCCGGCTTG
* * * *
11182114 CGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
130 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
11182179 AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGG
195 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
** * * * * * *
11182244 TTGCAACAGCACATACTGGGCTCGGGCATGTGTTGGTGTCACATTTTTCTTCATCGAGGCACCAT
260 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-
* * * * * *
11182309 CGTCGAACCATCGCCAGAGAACCTGACCGACAGCATTGAGGTTTCGGCGATCGGGGGGGCCGGAG
324 --TC--AGC-TCG---GAGAACCTGACCG-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGG
* * *
11182374 GGGTGTGCGCACCTGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTATCCCTC
379 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
11182439 ATCAAACCTCGAGAACTGACACTCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGTCAGTA
444 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
11182504 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAG
509 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
11182569 TTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAGTACAAGGATCACGTTTACCAAGTTTGGG
574 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGG
* *
11182633 GCCAAAACTCCTGCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAA
638 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
*
11182698 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
703 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
11182763 TTACAAGCCATAAAACTGGCATTGGCACACGGAAATATGAAGATGTGCCTAAACCCACCTACCAC
768 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * ***
11182828 CCTATCGATCCACGGCATCCGCATCTCGTCTTTCTGACCGGCGTAGTGCCAATCCGCCC
833 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CTGCCCGCCC
* * * * *
11182887 GCCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCTAGTCTAAGATCGGAT
1 GCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * ** * *
11182952 CGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGAATGGGACCTGACTAATCCCCGGCTT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC-GATCCCCGGCTT
* ** * ** *
11183017 GCGCATCCCGCCCCTTTGGCCGGCTGAGCATCCGCACACTCGTTTTATTGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
11183082 CGGAGTTCATT--C---C----C---C--AG-T-A-----A----AAGATCGGACCGAATCGAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * ** * *
11183122 TTTGCAGCAGCACATGCTGGGCTCGGCCGGGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCA
259 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
** * *** * ** ** * ******
11183187 TCA-C-CGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAA
324 TCAGCTCGGA-GAAC-CTGACCGC-GGCA-TTGG-------GGT-TCCGACGATCGGGGGGC---
*** * *** * * * * * * * * * *
11183250 CCTCGAGAACT-CACACCCCCTTAAAGAGCGTTTGGGATTTTACAGGTTTGCTGCTAGTAGCCAT
374 CGGGGGGGTGTGCGCA----CATGATGTGCG-ATGGG----TGCTGG--TACT--T-G--GCCCT
* * * **** * ** * * *** * * **
11183314 TAAAGT-GTCTGAAATGGGCACACTTTCTTCAAATAGTCACAAAATCTTGTA--CACTTCAAGTT
423 TATATTGGCCCCCTAT---C-C-C--TCATCAAA-CCTC-GAGAA-CTCACACCCCCTTAAAGAG
* * * * * *** *
11183376 C-TTAGCTGAAATTTTTTC---TGTG-AGCCA-AAAAAAATACAAGGATCACGTCT-ACCAAGCT
478 CATT---TGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATTA-AA-G-T---GTCTGA--AA---
* * * ** * * * **** * **** * *
11183434 TTGGGCCAAAACTCCTTCCATAAAAAT-TTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATC
528 -TGGG--GACACT--TT--TTTCAAATGGTCACAAAATCTTGTA-CACTTCGAGTTTT---TAGC
****** * ** ** * * * **
11183498 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGT
582 -TG---AAT---TTTTTTGT-G-CATGCCAACAAAAAT-AC---AAGGATCACGTCTACCA----
*** * * * * * ** **
11183562 ATGAATTTACAAGCCATAAAACTGGCATTGGCAC-ATGAAAATATGAAGATGTGCCTAAACC---
630 A-G--TTT-GGGGCC--AAAACT--CCTT--C-CGA-AAAAATTTTAAAAAAT-CCCGAACCGTA
* ** ** *** * **** * ** * ** * * * * *
11183623 -CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC-TCTCTGGC-TGGAGTAGTGCCCG
682 AAAAGTTTCA-AAAATC-AT-GAAAAATAG-AAAACGAGTCGTCT-TGCCAT-GA-AACTTCACG
* ** * ** * ** * * * ** * * *
11183685 CCCGCCTGCTCATTTCGTCGGTTAGCTAAGGCATACGGAGTT-CATTCCTAGTCTAAGATCAG-A
740 --TG-AAG-GC-TTAAG--GG--A-CCATTG--TATGAATTTACAAGCC-A-T-AAAAAT-GGCA
*** * * * * * * * ** ** *
11183748 TTGG-AC-CGAGGGTTACGGCAG-TAG-GATCGATA-GCACGTAGAGGGGGACCCGGTCGATCCC
789 TTGGCACGC-AGAAATA-TGAAGAT-GTG-CCTAAACCCACCT--A---CCACCCTATCGATCCA
* * * * * *
11183808 CGACTTGTGCATCCC-CCCCTTTGGCCG--GT--TGAAT----GCCC
845 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CTGCCCGCCC
* * * * * ** *
11183846 G--C-ACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC
1 GCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* ** * * * * * *
11183908 GGGTCGAGGGTTGCGGCAGCA-CATGCTAGGC-TCAGGCTTGTGCTGGTGCCACATTTTTCTTCG
66 AGACCGAGGGTTGCGGCAGCAGGAT-C--GGCAGCACGC-AGAG--GG-G-GAC------C--CG
* ** * ** * ** * * *
11183971 TCAGGGCACCATC-ACCGGAGCATCACCAGAGAACCTGACCGG-CGGCATTG-GGGTTCCG-ACG
115 AC-GATC-CC--CGGCTTGCGCATC-CC---GCCCCT--CTGGCCGGC--TGAGCG-CCCGCACG
* *** * * * * * ** * *** * * ** *
11184032 ATCGGGGGCCGAGGGGTGTGCGCACAACATT-TGCGAT-GGGTGCTGGTACTTGGCCCAAATATT
167 CTC--GTTTCG-TGGGT-T--G----AC-TTAGGC-ATACGGAGTTCATTCCCAGTCTAAGCATA
* *** * * ** * ** *** *** * *
11184095 TGG-CCCCTATCCCTCA-TCAAACCTCAAGAACTCACACC--CCCTTAAAG-AG--CAT-TTGAG
220 CGGAGTTC-ATTCC-CAGTCTAAGATC--GGAC-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **** * * * *** *** * ** * * *
11184152 ATTTTACAGGTTTGC-GCATCCCGCCCCTTTGGCCGGTTGAACGC-CC-GCATGCTCGGTTCGTG
280 CTCGGGCA--TGTGCTG-GTGCCGCATTTTTCTTC-GTCG-GGGCACCATCA-GCTCGG--AG-A
*** *** * * * * * * * * *
11184214 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACC-GAGGGTTGCAGCA
336 ACCTGACCGCGGCAT-TGG-G---GTT-CC-G---ACGATCGG--GGGGCCGGGGGGGTG-TGC-
* *** * * * *
11184278 GCACAT-ACTAG-GCTCA-GGCATGTGCTGGTGCCACATT-TTTCTT-TGTCAGGGCACC-ATCG
387 GCACATGA-T-GTGC-GATGG---GTGCTGGT---AC-TTGGCCCTTATAT-TGGCCCCCTATC-
** * * * *** ** ** **
11184337 CCGGAGC-ATCGC-CGGAGAAC-CTA-ACCGGCGGCATTG-GGGTTCTGACGA-TCGAGGGGCCG
440 CCTCATCAAAC-CTC-GAGAACTC-ACACC-CCCTTAAAGAGCATT-TGA-GATTTTA-----C-
* * * ** **** * * ** *
11184396 GGGGGTGTGC-GCACATGATGTGTGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCC
493 --AGGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-GT-C-T-G-----AAATGGGGACACT-T--
* ** ** * * *
11184460 CTCATT-AAACCTCGAGAACTCAC-ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
539 -T-TTTCAAA--T-G-G---TCACAAAAT-CTTGTACA-C-TTCGAG--TTT-----TTAGCTG-
** * ** * * **
11184523 CAGTAGCCATTAAAGTGTT-TGAAATGGGGACACTTTTTTCAAACGATCACAA-AATCTTGTAC-
584 -A--A--TTTT----T-TTGTG-CAT---G-C-C----AACAAA-AAT-ACAAGGATCACGT-CT
* *** * *** ** * * ** * *
11184585 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA-ATTACAAGGATCACG-TCC--A
626 AC--CAAGTTTGGGGC-CAAAACTCCT-T-C---CGAAAAAATTTTA-AAAAATCCCGAACCGTA
** * * ** * * *
11184646 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA--AATCTTGAAC-CGCCA--AAAG
682 AAAAGTTT-----CAAAAAT-CAT--G-AAAAA-TAGAAAACGAGTC--G-TCTTGCCATGAAA-
* *** * *** * * * * *
11184706 TTTCCAAAATCGTGAAAAATAGAAAACAAGTCATCATGCCATGAAACTTCACGTGAAGGCTTAAG
733 CTT-C---A-CGTGAAGGCT--TAAGGGA-CCAT--TG-TATG-AA-TTTAC---AAGCCAT-A-
* ** * * * * * **
11184771 GGAAAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAGTATGAAGATGTGCC
780 --AAAA-TG---GCATTGGCACG-CAGAAATAT-G-A--AG-AT---G-TGCCT-AA-A----CC
* * ** *
11184836 TAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-
823 -CACCTA-----CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
11184898 TGCCCGCCC
882 TGCCCGCCC
* * * **
11184907 GCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCATAGTCTAAGATCAGAC
1 GCCC-GCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * ** * * *
11184972 TGGATCGAGGGTTGCCACATCAGGATCGGCAGCACGCAGAGGGGGACCCAATCGATACCCGGCTT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCTT
* * *** ** * *
11185037 ACGCATCCC-ACGAGC-GTGCCGGCTGAGCGCCCTTACGCTCGTTTTGTGGGTTGACATAGGCAT
129 GCGCATCCCGCCCCTCTG-GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * **
11185100 ATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAAATGAG
193 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
*
11185165 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACC
258 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* *
11185230 ATC-GCT-GGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGG-GTG
323 ATCAGCTCGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTG
* *
11185292 CGCATATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAC
386 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
11185357 CTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACACGTTTGCTGCCAATAGCCATTA
451 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
11185422 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
516 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
11185487 CTGAATTTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAA
581 CTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * **
11185552 CTCCTTCCGAAAGAATTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATTGTGAAAAATAGA
645 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
*
11185617 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAG
710 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
11185682 CCATAAAAATGGCATTAGCACACA-AAAGTATGAAGATGTGCCTAAACCCACCTACCACCTTATC
775 CCATAAAAATGGCATTGGCACGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* ** * * * * *
11185746 GATCCACGACGCGCGCATCCCATCCCTTTGGCC-AGCGTAGTGCCCGCTCGCCC
839 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTG-CTGCCCGCCC
* * * * * *
11185799 GCACGTCCGATCGTTCCGTCGGTTGGCTTATGCATATGGAGTTCATTCCCAGTCTAAGATCAAAC
1 GCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * * * * *
11185864 CAGATCGAGCATTGCGGCAGCAGGATCGGCAGCCCGAAGAGGGGGGCTCGGCCGATCCTCGGCTT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC-CCGACGATCCCCGGCTT
* * * *
11185929 GCGCATCCCGTCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGTTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
11185994 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * *
11186059 GTTACGGCAGCACATGTTGAGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
259 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
*
11186124 TC-G-TCGGAGAACCTGACCGGCGACATTGGGGTTTCCG-CGATCGGGGGGGCCGGGGAGGGGTG
324 TCAGCTCGGAGAACCTGACC-GCGGCATTGGGG-TTCCGACGATC-GGGGGGCC-GGG-GGGGTG
*
11186186 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAA
384 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
11186251 ACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAT
449 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
11186315 TAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTT
514 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
11186380 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTTGGGCCAAA
579 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * *
11186445 ACTCCTTCCGAAAAAATTTTAACAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
644 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
11186509 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
709 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
11186574 CCCATAAAAATGGCATTGGCACACAGAAATGTGAAGAGGTGCCTAAACCCACCTACCACCCTATC
774 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
11186639 GATCTACGGCTTACGCATCCCATCTCTCTGGCCGGCATA--G-TGCCCGCCC
839 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCC
** * * *
11186688 ATCCGTTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
1 GCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * * * * * * *
11186753 TGGATCTAGGGTTACGACAGCAGGATTGACAGCACGCAGAGGGGGACCCGATCGA-CTCTCGGCT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATC-CCCGGCT
* * * * *
11186817 TGCGCA-CCCACCCCTCTGGTCGGATGAGCGCCCCCACGCTCGTTTCATGGGTTGACTTAGGCAT
128 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
11186881 ACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTGATTCCCAATCTAAGATCGAACGGGACCGAG
193 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
11186946 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
258 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* *
11187011 ATCGTCGGAGCATCGCCGGATAACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGCGCCGG
323 A---TC--AGC-T---CGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGG-GCCGG
* *
11187076 GGGGG-GATGTGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
377 GGGGGTG-TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
11187140 CTCATCAAACCTCCAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTATAGGTTTGCTGCCT
441 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
11187205 GTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
506 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
11187270 -ACGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
571 GA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * **
11187334 GGGGCCGAAA-TGCCTACCGGAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCA
635 GGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* * * *
11187398 TGAAAAATAGAAAATGAATCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTAT
699 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
11187463 AAATTTATAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAA
764 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
*
11187528 CCACCCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCGACGTA--G-TGCCCG-CC
829 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCC
* *
11187586 -CAC-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA-ATCAAGAC
1 GCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGAC
* * * * * * *
11187648 CTGACTGAGGGTT-CGGCAGCAGGATCGACAGTATGTAGAGGGGGACCCGATCGATCCCCGACTT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCTT
* ** * * *
11187712 GGGCATCCCGCCCCTCTGGCCGATTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGCCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * ** *
11187777 CAGAGTTCATTCCCAGTTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * *
11187842 GTTACGACAGCACGTGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
259 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * **
11187907 TC-GC-CAGAGCACCTGACCGACGGCATTGGGGTTTCGGTGATCGAGGGGGCCGAGGGGGGTGTG
324 TCAGCTCGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATCG-GGGGGCCG-GGGGGGTGTG
*
11187970 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAAC
386 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
11188035 CTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTA-AGGTTTTCTGCCAGTAGCCATTA
451 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
11188099 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAG
516 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
11188164 CTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
581 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * *
11188229 TCCTTCCAAAAAAATTTTAAAAAATCACGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-A
646 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * * *
11188293 AACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTCAGGGAACATTGTATGAATCTACAAGC
711 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
11188358 CATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
776 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
11188423 TCCACGGCTTGCGCATCCAGTCTCTTTGGCCGACGTGGTGCCCGCCCGCCC
841 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CTGCCCGCCC
* * * *
11188474 ACACGACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATTAGAC
1 GCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** ** * * * *
11188539 TGGATTGAGGGTTGCGGCCGTAGGATCTGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCTT
*** * * * *
11188604 GTTAATCCCACCCCTCTGGCCGGCTGAGCGCCTGCACGTTCGTTTCGTGGGTTGACTTACGCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * * * *
11188669 CGGAGTTCATTCCTAGCCTAAGCATACGAAGTTCATTCCCATTCTAAGATCTGACCAGATCGAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* *
11188734 GTTGCGGCAACACATCCTGGGCTC-GGCATTGTGCT-GTGCCGTCATTTTTCTTCGTCGGGGCAC
259 GTTGCGGCAGCACATGCTGGGCTCGGGCA-TGTGCTGGTGCCG-CATTTTTCTTCGTCGGGGCAC
*
11188797 CATCGTCGGAGCATCGTCGGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
322 CA---TC--AG---C-TCGGAGAACCTGAC-CGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG
* ** * * *
11188862 AGGGGGTTGTTTGCACATGATGTGCAACGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATC
376 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
11188927 CCTCATCAAACGTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCC
440 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
11188992 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
505 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
11189057 CGAGTTTTTTGCTGAATTGTTTTGTGCATGCCAACAAAAATACAACGATCATGTCTACTAAGTTT
570 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * * **
11189122 GGGGCCAAAATTCCTTCCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAGGTTAT-GAAAATTG
635 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT-TCAAAAATCA
*
11189186 TGAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
699 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
11189251 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGATGATGTGCCTAAACCTACCTA
764 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
11189316 CCACCCTATCGATCCACGACTTGCGCATCCCGTCCCTCTGGTCGGCGTAGT--T-CCCACCC
829 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCC
* *
11189375 G--C-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATTAGACC
1 GCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * ** * * * *
11189437 AGACCGAGGTTTGTGATAGCAGGATCGACAACATGTAGAGGGGG-CACCGACCGATCCCCGGCTT
66 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC-CCGA-CGATCCCCGGCTT
* * * * *
11189501 GCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTAAGGCGTA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
11189566 CGGAGTTCATTCCCA-TCCTAAGCATAC-GAGTTCATTCCAAGTCTAAGATCGGATCGGACCGAG
194 CGGAGTTCATTCCCAGT-CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * * *
11189629 GGTTACGGCAGTACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACC
258 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * *
11189694 ATC-G-TCGGAGAACATGACCGACGGCATTGGGGTTTCGATGATCGGAGGGGCCGGGGGGTGGGT
323 ATCAGCTCGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGG-GGGGCC--GGGG-GGGT
**
11189757 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCA
383 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
11189822 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
448 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
11189887 TTAAAGTGTTTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
513 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
11189952 TAGTTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
578 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** ** **
11190017 AA-TCCTTCCTGAAAAAA-TTTAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCATGAAAAAT
643 AACTCCTTCC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* * *
11190080 AG-AAACGAGTCGTCTTGCGATGAAACTTCTCATGAAGGCTTAAGGGACCATTGTATGAATTTAC
707 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
11190144 AAGCCATAAAAATGGCATTGGCACACAGAAATATGATA-TTGTGCCTAAACCCAGCTACCAACCT
772 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCT
* * * * * *
11190208 ATTGATCCATGGC-TGCACATCCCGTCTCTCTGGCCGGCATAGTGCCCT-CCCACCC
836 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--CTGCCCGCCC
* * ** ** *
11190263 GCCTGCCCGCTCGTTTTGTTAGTTGGCTTAGGCGCACGGAGTTCATTCCTAGTCTAAGATC-G--
1 GCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * ** * *
11190325 -A-ACCGA--ACTG-AG--GC-TTA-CGGCAGCACGCAGAGGGGGACCCGGCCGAATCCCCGACT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACG-ATCCCCGGCT
* * **
11190381 TGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACAAAGGCAT
128 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
** **
11190446 ACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTAAG
193 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * ** **
11190511 GGTTGCTGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTCACCGGGGCACC
258 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
** * * * *
11190576 ATCGCCGGAGCATCGCTGCAGAACCTGACCGACGGCATTGGGGTTCCGGTGATTGAGGGGACTGG
323 AT---C--AGC-TCG--G-AGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGG
* *
11190641 GGGGTGT--GCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTTGCCCCCTATCCCT
378 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
11190704 CATCAAACCTTGAGGACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
443 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
11190769 AGCCATTAAAGTG-CTTGAACTGGGG-CACTTTTTTCAAAATGGTCACAACATCTTGTACACTTC
508 AGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTC
* * *
11190832 GATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAACGATCATGTCTACCAAGTTTG
571 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
11190897 GGGCTAAAACGCCTAT-CGAAAAAATTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
636 GGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* *
11190961 GAAAAATAAAAAACGAGTCATCTTGCCATGATAA-TTCACGTGAAGGCTTAAGGGACCATTGTAT
700 GAAAAATAGAAAACGAGTCGTCTTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
11191025 GAATTTACGAGCCATAAAAATGGCATTGGCATGCAGAAATATGGAGATGTTCCTAAACCAACCTA
764 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
*
11191090 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-TGCCCGCCC
829 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCC
* * *
11191149 ACCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
1 GCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * *
11191214 CGGATCGAAGGTTGCGGCAGCAGGATCGGCAGTAGGCAGAGGGGGACCCGACTGATCCCCGACTT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC-GATCCCCGGCTT
* * * *
11191279 GCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
11191344 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * *
11191409 GTTGCGGCAGCACATGCTAGACTCGGG-ATTGTGGTGGTGCCGCATTTTTCTTCGTCGGGGCACC
259 GTTGCGGCAGCACATGCTGGGCTCGGGCA-TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * * * *
11191473 ATC-G-TCGGAGAACCTAACCAGTGGCATTTGGGTTCCGATGATCGGGGGGGCC-TGGGGGTGTA
323 ATCAGCTCGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTG
* * * *
11191535 CGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGGCCCCTATCCCTTATCAAAC
386 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
11191600 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
451 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
11191665 AAGTGTCTGAAATGGGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTTGAGTTTTTAG
516 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
11191729 CTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAC
581 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
11191793 TCCTTCCTGAAAATAATTTTAAAAAATCACCGAACCG-CAAAAGTTTTGAAAAATCCCATG-AAA
646 TCCTTCC-GAAAA-AATTTTAAAAAATC-CCGAACCGTAAAAAG-TTTCAAAAAT--CATGAAAA
* *
11191856 ATAG-AAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-TTGTATG-ATTT
705 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
11191918 ACAAGCCGTAAAAATGGCATTGGGCATG-TGAAATATCAAGATGTGCCTAAACCCACCTACCACC
770 ACAAGCCATAAAAATGGCATT-GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* ** *
11191982 CTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGG-TAAGCGTAGTGCCCGCCCGCCC
834 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTG-CTGCCCGCCC
* * *
11192040 GCCCTCCCGCTCGTTTCGTCGGTT-GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGAC
1 GCCC-GCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * * *
11192104 CAGACCGATGGGTTG-GGACAGTAGGATCGATAGCATGCAGAGGGGGACCCGGATGATCCTCGAC
65 CAGACCGA-GGGTTGCGG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACGATCCCCGGC
* *
11192168 TTGC-CTATCCCGTCGCTCTGGCCGGCTGA------G--CG--C----C---------C----GC
127 TTGCGC-ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
11192205 ATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGCACCG
191 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* ** * *
11192270 AGGGTTACGATAGCACATGCTGGGCTC-GGCATGTGCTAGTGCCGCATTTTTCTTCGTCGAGGCA
256 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * *
11192334 CCATCA-C-CGGAGAACTTGTACGGCGGTATTAGGGTTCCGACGATCGGGGGTGCCGGGAGGGTG
321 CCATCAGCTCGGAGAACCTG-ACCGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTG
* * * * * * * *
11192397 TGCACACATGATGTGAGATGGTTGCTGGTGCTTTGCGCTAATATTGGCCCCCTATTCCTCATCAA
384 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
11192462 TCCGT-GAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCA
449 ACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
11192526 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTTGATTTTT
513 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
** * * *
11192591 TAGCTGAATTTTTTT-TTTATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTGGTGCCAA
578 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * ** *
11192655 AACTCCATCCGAAAAAATTTTTAAAAATCTCGAACCGCAGAAAGTTTTGAAAATTATGAAAAATA
643 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* *
11192720 GAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACA
708 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
11192785 AGCCATAAAAATGGCATTGGCATGCAGAAATATGATGATGTGCCTAAACCCTCCTACCACCCTAT
773 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
11192850 CGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-TGCCCGCCC
838 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCC
* * * *
11192900 GCCCTCCCGATCGTTTCGTCGGTTGGCTTGGGCATACGGAGATCATTCCCAGTCTAAGATCAGAC
1 GCCC-GCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * *
11192965 TAGACTGAGGGTTGGGGTAGTAGGATCGACAGCACACAGAGGGGGACCCAGACGATCCCCGACTT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACGATCCCCGGCTT
* * * *
11193030 GCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTAACTTTGGCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * * * * *
11193095 CGAAATTCATTCCCAATCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGT
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * * * * *
11193160 GTTGCGACAGCACATGCTAGGCTTGGGCATCTGCTGGTGTCGCATTTTTCTTC-ACCGGGCACCA
259 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C-
* *
11193224 TCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGATTTCGACGATCGGGGGGCCGGGG
322 -CATC--AGC-T---CGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG
* *
11193289 GGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTC
379 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
11193354 TTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTA
444 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * **
11193419 GCAATTAAAGTATCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAG
509 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
11193484 CTTTTAGCTGAATTTTTTTGAGCATGCCAAC-AAAATAGAAGGATTCACGTCTACCAAGTTTGGG
574 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA-TCACGTCTACCAAGTTTGGG
* * * **
11193548 AGCCAAAACTACTTCCGGAAAAAAGTTT-AAAAATCCTGAACCGTAAAAAGTTT-TTAAATCATG
638 -GCCAAAACTCCTTCC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
*
11193611 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTGTATG
701 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TTGTATG
* * *
11193676 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAAGAAGATGTGCCTAAACCCACCTAC
765 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
11193741 CACCCTATCGATCCACGGCTT--GCA-CTCGTCTCTCCTGGCCGGCGTAGTG-TG--C-CCC
830 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT-CTGGCCGACGTAGTGCTGCCCGCCC
11193796 GCCC-CCGCTCGTTTTCGTCGGTTGGCTTAGGCA-ACGGAGTTCATT-CCAGTCTAAGAT--G-C
1 GCCCGCCGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * *
11193855 CAGACATGAGGG-TGTATG-AGCAGGAT---CATGCA-ACAGAGGGGGTCCCGACGATCCCCGGC
65 CAGAC-CGAGGGTTG-CGGCAGCAGGATCGGCA-GCACGCAGAGGGGGACCCGACGATCCCCGGC
* * **
11193914 TTGTGCAT-CCG-CCCTCTAGCCGATTGAGCGCCCGCA--CTCGTTTCGTGGGTTGACTTAGGCA
127 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
11193975 TATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
192 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
11194040 GGG-TGCGGCAGCACATGCTAGGGCTC-GGCAATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
257 GGGTTGCGGCAGCACATGCT-GGGCTCGGGC-ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
11194103 ACCATCGCCGGAGCATCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
320 ACCAT---C--AG---CTCGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGCCG
11194168 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
376 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
11194233 CTCATCAAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
441 CTCATCAAA-CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
11194298 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
505 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
11194363 TGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAAGTT
570 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AAGTT
** ** *
11194427 T-GGGCCAAAACTCCTTCCG-AAAAATTTT-AAAAATCCCGAACCACAAAAAGTTT-TGAAATCG
634 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* * *
11194488 TG-AAAATAGAAAATGAGGTCCGTCTTGCCATGAAACTTCACATG-AGGCTTAA-GGACCGTTGT
699 TGAAAAATAGAAAACGA-GT-CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * * *
11194550 ATG-ATTTACCAGCCTATAAAAATAGCATTGGCACGTAAAAATATCAAGAGTGTGCCTAAACCCA
762 ATGAATTTACAAGCC-ATAAAAATGGCATTGGCACGCAGAAATATGAAGA-TGTGCCTAAACCCA
* *
11194614 CTTACCACCCTATCGATCCA-GGCTTGCG-ATCCC-TCTCTCTGGCCGACGTAGTGCCGCCCGGC
825 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGCCC-GC
11194676 CC
889 CC
* * * *
11194678 ACCC-CTCG-TC-TTTCATCGATT-GCTTAGGCATACGGAGTTCATT-CCAGTCTAAGAT-TG--
1 GCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
11194735 --GACTGAGGGTT---AC-GCA-GATC-G--TCAC-C-GAGTGGGA-CCGATCGAT-CCC-GCTT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCTT
* *
11194785 --GCAT--CG------TGGCCGGTTGAG-G-CCGCACGCTC---T--T---TT--C-TAGGCGTA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
11194827 CGGAGTTCATTCCCAGTC---G-AT-CGGAAG--CATT--C-GTCT-CGAT-AGA-C--ACTGA-
194 CGGAGTTCATTCCCAGTCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * ***
11194876 GG--GCTG--GCAC--GAT--GCT---G---GTG-T-G-G--G-ATTTTTCTT-GTTACGG-A--
258 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
*
11194917 ATC-G--CGGAGAA----A-------ATTGGGGTTCCG-CGATCGGGGGGTC-GGGGGGTGTGCG
323 ATCAGCTCGGAGAACCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCG
* * *
11194966 CACAATGATGTGCGATGGGTGCTGGTAATTGGCCCTTATATTGGTCCCCTATCACTCATCAAACC
388 CAC-ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
11195031 TCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAA
452 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
11195096 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAAC
517 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
11195161 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGACCCAAACT
582 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * * *
11195226 CATTTCGAAAAAATTTTAAAAAATCCCCAATCGCAAAAAGTTT-GAAAATCGTGAAAAATAGAAA
647 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
11195290 ATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
712 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
11195355 ATAAAAATGGCATTGGCATGTAGAAATAGGAAGATGTACCTAAACCCACCTACCA-CCTATCGAT
777 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
11195419 CCACAGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCC
842 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CTGCCCGCCC
* * * *
11195469 GCCCGCTCGGTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAAAC
1 GCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * *
11195534 C-GAACTGAGGGTTGCAGTAGCAGAATCGACAGCACGCAGAGGGGGAGCCGACCGATCCCCGGCT
65 CAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCT
* * * ** * *
11195598 TGCGCAT-CCGTCCCTTTGGTCGGCTGA--G-ATG--C-CTCG---C-TAGCTT-A-TT-----T
128 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
11195645 -CGTG-GTTGA----C--T-T-AGCATACGGAGTTCATT-CCAGTCTAAGATCGGA-CGGACCAA
193 ACG-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * *
11195698 GGGTTGCGGCAGCACATGCTAGGCTAAGGGCATGTGCTGGTGCCACA-TTTTCTTCGTC--GG-A
257 GGGTTGCGGCAGCACATGCTGGGCT-CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
*
11195759 GCATC-GC-CGGAGAACCTGAACCGGCAGGCATTGGGGTTCCGACG-TCGAGGGGGCC-GGGGGG
321 CCATCAGCTCGGAGAACCTG-ACC-GC-GGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGG
* *
11195820 TG-GTGCACATGATGTGCAAATGGGTGGCTGGTACTTGGCCCTT-TATTGGCCCCCTATCCCTCA
382 TGTGCGCACATGATGTGC-GATGGGT-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
11195883 TCAAACCTCAGAGAACTCATGCA-CCCCTTAAAGAGCATTTGAGATTTTACCAAGTTCTGCTGGC
445 TCAAACCTC-GAGAACTCA--CACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTT-TGCT-GC
* *
11195947 CAATAGCCATTAAAGTGTCCTAAAATGGGG-CACTTTTTTCCAAATTGGTCACAAAATC-TGTAC
504 CAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTTTTTT-CAAA-TGGTCACAAAATCTTGTAC
* * * * * *
11196010 ACTTTTGAGTTTTTAGTTGAGTTGTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
566 AC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * ** *
11196075 AGTTTGGTGCCAAAACTCCTTCCGAAAAAATTGTAAAAAATCCAAAACCGCAAAAAGTTTCAAAA
630 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * *
11196140 ATCATGAAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCACATGAAGGCTTAAAGGACCATT
695 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
11196205 GTATGAATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
760 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * ** * * *
11196270 CCTACCACCCTATCGATACACGGATTATGCATCCCATCTCTCTAGCCGGCGTAGTGCCTGCCCGC
825 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CTGCCCGC
*
11196335 CG
889 CC
* * ** * *
11196337 GCCCGTCCGTTCATCCCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGAC
1 GCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * * * * *
11196402 TGGACCGAGGGTTACGGCAGCAGGATCTGTAGCACCCAGATGGGGACCCGATCGATCCCCGGCTT
65 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCTT
* * * * *
11196467 GTGCATCCCGCCCCTCTAGCCGGCTGAGCGCTCGCACGCTCGTTTCCTAGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
11196532 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCAGTCTCAGATCAGACCAGACCGAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * *
11196597 GTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCA
259 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * *
11196662 TC-GC-CGGAGAACCCGACCGGCGGCATTGGGGTTTCGAAGATCGGGGGGGCCGCGGGGGTGTGC
324 TCAGCTCGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGC
* * *
11196725 GCACGTCG-TGAGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
387 GCACAT-GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
11196789 CTTGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
451 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* **
11196854 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTTAAGTTTTTAG
516 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* **
11196919 CTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAGAAATGTTTGGGGCCAAA
581 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAA-GTTTGGGGCCAAA
* ** ** * *
11196984 ACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGGAAAATAG
644 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
*
11197049 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAA
709 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * * **
11197114 GCCATAAAAATAGCATTGGCACACAAAAATATCAAGATGTGCCTAAACCCATTTACCACCCTATC
774 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
11197179 GATCCATGGCTTACGTATCCCGTCTCTCTGGCCTACGTAGTGCCCGACCGCCCGCCTACCC
839 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----G-CTGCCCG----CCC
* * * * * * **
11197240 ACCCGCCCGCACATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGACTAAGATTGGAC
1 GCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * ** * * * * * *
11197305 C-GAACTGAGTTTTGTGATAGCAGGATTGGTAGCACGTAGACGAGGACCCGACTGATCCCCGGTT
65 CAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC-GATCCCCGGCT
* * * * *
11197369 TGCGCAACCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTT-AGCTTAGGCG
128 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCA
*
11197433 TACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------CGGACC-G---TA
192 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * *
11197473 -GGTTACGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTTGCCGAGGCAC
257 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * **
11197537 CATCCCTGGAGCATCGCCGGAGAACCTGACCGGGGCATTGGGGTTCTGGTGATCGGGGGGGCC-G
322 CAT--C---AGC-T---CGGAGAACCTGACCGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGG
* * *
11197601 GGGGGTGTGCGCACTTGATGTGCGAT-GGTGCTGGTGCTTGGCCCTTCTATTGGCCCCCTATCCC
377 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
11197665 TTATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAG
442 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
11197730 TAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
507 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
11197795 AGTTTTTAGCTAAATTTTTTTAG-GCATTCCAACAAAAATACAAGGATCACGTGTACCAAGTTTG
572 AGTTTTTAGCTGAATTTTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
** * * * ** * *
11197859 GGGAGAAAACTCTTTCCGAAAAAAGTTTAAAAAATCCCTAACCAAAAAAAGTTTCGAAAATCGTG
636 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
11197924 AAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGA
701 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * * * *
11197989 ATTTACAAGCCATAAAAATAGCATTGGCATGAAAAAATATCAAGATGTGCCTAAACCAACTTACC
766 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * **
11198054 ACCCTATCGATCCATGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGACCGATC
831 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CTGCCCGCCC
* * * * **
11198115 GCCCGCCCGCACATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATTGGAC
1 GCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * ** * * * * *
11198180 C-GAACTGAGTTTTGTGATAGCAGGATTGGTAGCACGCAGACGGGGACCCGATTGATCCCCGACT
65 CAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCT
* * ** * * *
11198244 TGCGCATCCCACCCCTCTCGCCGGCTGAGCGCCCGCACGCTAATTTTGTGGGTTGGCTTAGGCGT
128 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
11198309 ACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C----A---GACC-G---TA-
193 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
** * * * * *
11198348 GGTTATGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCTGCTTTTTTCTTTGCCGGGGCACC
258 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* **
11198413 ATCCCTGGAGCATCGTCGGAGAACCTGACCGGGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGG
323 AT--C---AG---C-TCGGAGAACCTGACCGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGG
* * *
11198478 GGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCATATCCCT
378 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
11198543 TATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGT
443 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
11198608 AGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
508 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
11198673 GTTTTTAGCTAAATTTTTTTAG-GCATTCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGG
573 GTTTTTAGCTGAATTTTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
** * * * * * * *
11198737 GGAGAAAACACTTTCCGAAAAAAGTTTAAAAAATCCCTAACCGGAAAAAGTTTCGAAAATCGTGA
637 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
* * *
11198802 AAAAGAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAA
702 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* **
11198867 TTTACAAGCCATGAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
767 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
11198932 CCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-TGCCCGCCC
832 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCC
* * *
11198988 GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAAGCATACAGAGTTCATTCCCAGTTTAAG
1 GCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
11199046 CATGCTCGCT
Statistics
Matches: 17123, Mismatches: 2415, Indels: 2105
0.79 0.11 0.10
Matches are distributed among these distances:
786 153 0.01
787 124 0.01
788 55 0.00
789 65 0.00
790 60 0.00
791 36 0.00
792 9 0.00
793 2 0.00
794 10 0.00
795 22 0.00
796 12 0.00
800 8 0.00
801 10 0.00
805 4 0.00
806 3 0.00
808 1 0.00
809 3 0.00
810 1 0.00
811 9 0.00
812 9 0.00
813 5 0.00
814 13 0.00
815 12 0.00
816 9 0.00
817 3 0.00
818 11 0.00
819 9 0.00
820 6 0.00
821 3 0.00
822 5 0.00
823 13 0.00
824 1 0.00
825 4 0.00
827 7 0.00
829 2 0.00
830 2 0.00
831 3 0.00
832 4 0.00
834 3 0.00
835 3 0.00
836 4 0.00
838 4 0.00
839 3 0.00
840 4 0.00
841 5 0.00
842 4 0.00
843 7 0.00
844 11 0.00
845 10 0.00
846 4 0.00
847 1 0.00
850 25 0.00
851 1 0.00
853 2 0.00
856 1 0.00
858 10 0.00
859 58 0.00
860 145 0.01
861 90 0.01
862 73 0.00
863 103 0.01
864 444 0.03
865 229 0.01
866 336 0.02
867 446 0.03
868 177 0.01
869 281 0.02
870 47 0.00
871 18 0.00
872 140 0.01
873 409 0.02
874 29 0.00
875 342 0.02
876 49 0.00
877 575 0.03
878 134 0.01
879 150 0.01
880 85 0.00
881 137 0.01
882 360 0.02
883 552 0.03
884 292 0.02
885 502 0.03
886 240 0.01
887 803 0.05
888 491 0.03
889 422 0.02
890 678 0.04
891 298 0.02
892 445 0.03
893 540 0.03
894 802 0.05
895 1137 0.07
896 222 0.01
897 733 0.04
898 391 0.02
899 419 0.02
900 74 0.00
901 23 0.00
902 23 0.00
903 670 0.04
904 317 0.02
905 165 0.01
906 6 0.00
907 5 0.00
908 6 0.00
909 4 0.00
910 6 0.00
912 4 0.00
913 2 0.00
914 8 0.00
916 2 0.00
917 10 0.00
918 17 0.00
921 6 0.00
922 4 0.00
923 3 0.00
924 2 0.00
925 3 0.00
926 2 0.00
927 3 0.00
928 2 0.00
929 8 0.00
930 8 0.00
931 5 0.00
932 1 0.00
933 15 0.00
934 14 0.00
935 7 0.00
937 2 0.00
938 7 0.00
940 16 0.00
941 8 0.00
943 13 0.00
944 1 0.00
945 10 0.00
946 10 0.00
947 9 0.00
948 28 0.00
949 21 0.00
950 5 0.00
952 1 0.00
953 2 0.00
954 4 0.00
955 74 0.00
956 4 0.00
957 5 0.00
958 4 0.00
959 10 0.00
960 4 0.00
961 6 0.00
962 8 0.00
963 16 0.00
964 16 0.00
965 4 0.00
966 1 0.00
967 8 0.00
968 27 0.00
969 3 0.00
970 2 0.00
971 7 0.00
972 3 0.00
973 3 0.00
975 9 0.00
976 5 0.00
977 16 0.00
978 8 0.00
979 1 0.00
980 4 0.00
981 2 0.00
982 1 0.00
983 3 0.00
984 4 0.00
987 10 0.00
988 12 0.00
992 1 0.00
993 1 0.00
994 1 0.00
995 1 0.00
996 4 0.00
997 6 0.00
998 9 0.00
999 5 0.00
1000 1 0.00
1001 8 0.00
1002 3 0.00
1003 3 0.00
1004 1 0.00
1006 4 0.00
1007 8 0.00
1008 10 0.00
1009 41 0.00
1010 31 0.00
1011 24 0.00
1012 25 0.00
1013 11 0.00
1014 15 0.00
1015 21 0.00
1016 8 0.00
1017 14 0.00
1018 9 0.00
1019 2 0.00
1020 4 0.00
1021 4 0.00
1022 8 0.00
1023 7 0.00
1024 84 0.00
1025 41 0.00
1026 27 0.00
1027 17 0.00
1028 24 0.00
1029 16 0.00
1030 40 0.00
1031 96 0.01
1032 89 0.01
1033 29 0.00
1034 33 0.00
1035 62 0.00
1036 48 0.00
1037 30 0.00
1038 69 0.00
1039 47 0.00
1040 27 0.00
1041 28 0.00
1042 28 0.00
1043 22 0.00
1044 28 0.00
1045 10 0.00
1046 1 0.00
1047 11 0.00
1048 8 0.00
1049 16 0.00
1050 6 0.00
1051 5 0.00
1052 2 0.00
1053 6 0.00
1054 5 0.00
1055 214 0.01
1056 133 0.01
1057 23 0.00
1058 7 0.00
1059 205 0.01
1060 197 0.01
1061 7 0.00
1063 7 0.00
1064 5 0.00
1065 65 0.00
1066 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACGATCCCCGGCTTGC
GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
AGCTCGGAGAACCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCC
Found at i:11182203 original size:26 final size:26
Alignment explanation
Indices: 11182173--11182225 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11182163 GTTGACTTAG
11182173 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
11182199 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11182225 G
1 G
11182226 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11185132 original size:26 final size:26
Alignment explanation
Indices: 11185096--11185148 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11185086 GTTGACATAG
*
11185096 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11185122 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11185148 G
1 G
11185149 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11186025 original size:26 final size:26
Alignment explanation
Indices: 11185989--11186041 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11185979 TTTGACTTAG
11185989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11186015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11186041 G
1 G
11186042 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11186907 original size:26 final size:26
Alignment explanation
Indices: 11186877--11186929 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11186867 GTTGACTTAG
* *
11186877 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
11186903 GCATACGAAGTTGATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
11186929 G
1 G
11186930 ATCGAACGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:11189925 original size:887 final size:882
Alignment explanation
Indices: 11184225--11199045 Score: 16855
Period size: 887 Copynumber: 16.8 Consensus size: 882
11184215 GTTGACTTAG
* * * *
11184225 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
11184290 CTCAGGCATGTGCTGGTGCCACATTTTTCTTTGTCAGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--T---CGGAGA
* * * * *
11184355 ACCTAACCGGCGGCATTGGGGTTCTGACGATCGAGGGGCC-GGGGGGTGTGCGCACATGATGTGT
119 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
11184419 GATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACA
184 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
11184484 CCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
249 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
11184549 GGGACACTTTTTTCAAACGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
314 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
11184614 GCATGCCAA-AAAAATTACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
379 GCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * * * * * *
11184678 ATTTTAAAAAATCTTGAACCGCCAAAAGTTTCCAAAATCGTGAAAAATAGAAAACAAGTCATCAT
443 ATTTTAAAAAATCCCGAACCGCAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTT
**
11184743 GCCATGAAACTTCACGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCATAAAAATGGCA
507 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
11184808 TTGGCATGCAGAAGTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
572 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
11184873 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAG
637 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAG
* ** ** * * * *
11184938 GCATATGGAGTTCATTCATAGTCTAAGATCAGACTGGATCGAGGGTTGCCACATCAGGATCGGCA
698 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * ***
11185003 GCACGCAGAGGGGGACCCAATCGATACCCGGCTTACGCATCCC-ACGAGC-GTGCCGGCTGAGCG
763 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG-GCCGGCTGAGCG
** * * *
11185066 CCCTTACGCTCGTTTTGTGGGTTGACATAGGCATATGGAGTTCATTCCCAGTCTAA
827 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
11185122 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAAATGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
11185187 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-CTGGAGAACCTGACCGG
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGAACCTGACCGA
* * *
11185251 CGGCATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGG-GTGCGCATATGATGTGCGATGGGTGC
129 CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
11185315 TGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
11185380 AGTGCATTTGAGATTTTACACGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
11185445 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTATGCATGCCA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCA
* * *
11185510 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAGAATTTTAAAA
387 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * **
11185575 AATCCCGAACCGTAAAATGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
452 AATCCCGAACCGCAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * **
11185640 CTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACAC
516 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * ** *
11185705 A-AAAGTATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGACGCGCGCATCCCAT
581 AGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
11185769 CCCTTTGGCCAGCGTAGTGCCCGCTCGCCCGCACGTCCGATCGTTCCGTCGGTTGGCTTATGCAT
645 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-T-CG-T--TT-CGTCGGTTGGCTTAGGCAT
* * * ** * * *
11185834 ATGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGCATTGCGGCAGCAGGATCGGCAGCCC
702 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCAC
* * * * * * *
11185899 GAAGAGGGGGGCTCGGCCGATCCTCGGCTTGCGCATCCCGTCCCTCTGGCCGGTTGAGCGCCCGC
767 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
11185964 ACACTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11186015 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCACATGTTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
11186080 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGAC
*
11186145 GACATTGGGGTTTCCG-CGATCGGGGGGGCCGGGGAGGGGTGTGCGCACATGATGTGCGATGGGT
130 GGCATTGGGG-TTCCGACGATC-GGGGGGCC-GGG-GGGGTGTGCGCACATGATGTGCGATGGGT
* *
11186209 GCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTT
191 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
11186273 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
256 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
11186338 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
321 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
11186403 AACAAAAATACAAGGATCACGTCTACCAACTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAC
386 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
11186468 AAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
451 AAATCCCGAACCGCAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* **
11186532 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCACA
515 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
11186597 CAGAAATGTGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTACGCATCCCAT
580 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
11186662 CTCTCTGGCCGGCATAGTGCCCGCCCATCCGTTCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
645 CTCTCTGGCCGGCGTAGTGCCCGCCC-GCC---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* ** * * * *
11186727 AGTTCATTCCCAGTCTAAGATCGGACTGGATCTAGGGTTACGACAGCAGGATTGACAGCACGCAG
706 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
* * * * * *
11186792 AGGGGGACCCGATCGA-CTCTCGGCTTGCGCA-CCCACCCCTCTGGTCGGATGAGCGCCCCCACG
771 AGGGGGACCCGACCGATC-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
11186855 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11186903 GCATACGAAGTTGATTCCCAATCTAAGATCGAACGGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
11186968 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGATA
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-G-G-A------G--A
* *
11187033 ACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGCGCCGGGGGGG-GATGTGCACATGATGT
119 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTG-TGCGCACATGATGT
* *
11187097 GCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
11187162 CACCCCCTTATAGAGCATTTGAGATTTTATAGGTTTGCTGCCTGTAGCCAATAAAGTGTCTGAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
11187227 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-ACGTTTTTAGCTGAATTTTTT
312 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTT
* * * * *
11187291 TGTGTATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCGAAA-TGCCTACCGGA
376 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAA
* * * *
11187355 AAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAATCGT
440 AAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
11187420 CTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATAAATTTATAAGCCATAAAAATG
504 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
11187485 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTT
569 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
11187550 GCGCATCCCTTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGG
634 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
11187615 CATACGGAGTTCATTCCCAGTCTAA-ATCAAGACCTGACTGAGGGTT-CGGCAGCAGGATCGACA
699 CATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * ** *
11187678 GTATGTAGAGGGGGACCCGATCGATCCCCGACTTGGGCATCCCGCCCCTCTGGCCGATTGAGTGC
763 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
11187743 CCGCACGCTCATTTCGTGGGTTGACTTAGCCATACAGAGTTCATTCCCAGTTTAA
828 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
11187798 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTACGACAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
11187863 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCACCTGACCGAC
66 CTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGAC
* **
11187928 GGCATTGGGGTTTCGGTGATCGAGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
130 GGCATTGGGGTTCCGACGATCG-GGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
11187993 TGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
11188058 AGAGCATTTGAGATTTTA-AGGTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
11188122 TTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
11188187 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
388 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * * *
11188252 ATCACGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAACGAGTCGTCTCGCCATGAAAC
453 ATCCCGAACCGCAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
11188316 TTCACGTGAAGGCTTCAGGGAACATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCAAGCA
517 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
*
11188381 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCT
582 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
11188446 CTTTGGCCGACGTGGTGCCCGCCCGCCCACACGACCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
647 CTCTGGCCGGCGTAGTGCCCGCCCG------C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** ** * * *
11188511 GGAGTTAATTCCCAGTCTAAGATTAGACTGGATTGAGGGTTGCGGCCGTAGGATCTG-CAGCACG
704 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATC-GACAGCACG
* *** * *
11188575 CAGAGGGGGACCCGACCGATCCTCGGCTTGTTAATCCCACCCCTCTGGCCGGCTGAGCGCCTGCA
768 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
11188640 CGTTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCTAGCCTAA
833 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
11188690 GCATACGAAGTTCATTCCCATTCTAAGATCTGACCAGATCGAGGGTTGCGGCAACACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
11188755 CTCGGCATTGTGCT-GTGCCGTCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
66 CTCGGCA-TGTGCTGGTGCCG-CATTTTTCTTCGTCGGGG---CA----C----CATCGTCGGAG
* * * **
11188819 AACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTTGTTTGCACATGATG
118 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATG
* * * *
11188884 TGCAACGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTC
181 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
11188949 ACACCTCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
246 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
11189014 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTGTTT
311 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
11189079 TGTGCATGCCAACAAAAATACAACGATCATGTCTACTAAGTTTGGGGCCAAAATTCCTTCCAAAA
376 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * ** *
11189144 AAATTTAAAAAAATCCCAAACCGTAAAAGGTTATGAAAATTGTGAGAAATAGAAAACGAGTCGTC
441 AAATTTTAAAAAATCCCGAACCGCAAAAAGTT-TGAAAATCATGAAAAATAGAAAACGAGTCGTC
11189209 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
505 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
11189274 CATTGGCATGCAGAAATATGATGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGACTTG
570 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
11189339 CGCATCCCGTCCCTCTGGTCGGCGTAGTTCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
635 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
11189404 ATACGGAGTTCATTCCCAGTCCAAGATTAGACCAGACCGAGGTTTGTGATAGCAGGATCGACAAC
700 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGC
* * *
11189469 ATGTAGAGGGGG-CACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCC
765 ACGCAGAGGGGGAC-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
11189533 CGCACGCTCATTTCATGGGTTGACTAAGGCGTACGGAGTTCATTCCCA-TCCTAA
829 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-CTAA
* * * *
11189587 GCATAC-GAGTTCATTCCAAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
11189651 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGAACATGACCGAC
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGAC
* *
11189716 GGCATTGGGGTTTCGATGATCGGAGGGGCCGGGGGGTGGGTGTGCGCACATGATGTGCGATGGGT
130 GGCATTGGGGTTCCGACGATCGG-GGGGCC--GGGG-GGGTGTGCGCACATGATGTGCGATGGGT
** *
11189781 GCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
191 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
11189846 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
256 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
11189911 TATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCC
321 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
11189976 AATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCTGAAAAAA-TTTAA
386 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTAA
** * *
11190039 AAAATCTTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAG-AAACGAGTCGTCTTGCGATGA
450 AAAATCCCGAACCGCAAAAAG-TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
11190103 AACTTCTCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
514 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * * * *
11190168 ACAGAAATATGATA-TTGTGCCTAAACCCAGCTACCAACCTATTGATCCATGGC-TGCACATCCC
579 GCAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * **
11190231 GTCTCTCTGGCCGGCATAGTGCCCTCCCACCCGCCTGCCCGCTCGTTTTGTTAGTTGGCTTAGGC
643 GTCTCTCTGGCCGGCGTAGTG--------CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * * *
11190296 GCACGGAGTTCATTCCTAGTCTAAGATC-GAACC-GAACTGAGGCTT-----A-C--G---G-CA
700 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ACCGAGGGTTGCGACAGCAGGATCGACA
* * *
11190347 GCACGCAGAGGGGGACCCGGCCGAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCG
763 GCACGCAGAGGGGGACCCGACCG-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* ** **
11190412 CCCGCACGCTCCTTTCGTGGGTTGACAAAGGCATACAAAGTTCATTCCCAGTCTAA
827 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
11190468 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTAAGGGTTGCTGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** **
11190533 CTCGGGCATGTGCTGGTGATGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCTGCAGA
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--TCG--G-AGA
** * * * *
11190598 ACCTGACCGACGGCATTGGGGTTCCGGTGATTGAGGGGACTGGGGGGTGT--GCACATGATGTGC
119 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
11190661 GATGGGTGCTGGTACCTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTTGAGGACTCACA
184 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
11190726 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTTGAACT
249 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAAT
* *
11190790 GGGG-CACTTTTTTCAAAATGGTCACAACATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
313 GGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
11190854 GTGCATGCCAACAAAAATACAACGATCATGTCTACCAAGTTTGGGGCTAAAACGCCTAT-CGAAA
377 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAA
* * * * * *
11190918 AAATTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATC
441 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTC
*
11190983 TTGCCATGATAA-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATG
505 TTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
11191047 GCATTGGCATGCAGAAATATGGAGATGTTCCTAAACCAACCTACCACCCTATCGATCCACGGCTT
569 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
11191112 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTTGTTTCGTCGGTTGGCT
634 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
11191177 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGTTGCGGCAGCAGGATCG
695 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCG
* * * * * * *
11191242 GCAGTAGGCAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAG
760 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
11191307 CGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
825 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11191365 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
11191430 CTCGGGATTGTGGTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTAACC-AG
66 CTCGGCA-TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGA-
* * * * * *
11191494 TGGCATTTGGGTTCCGATGATCGGGGGGGCC-TGGGGGTGTACGCACGTGATGTGCGATGGGTGC
129 CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
11191558 TGGTACTTGGCCTTTATATTGGGCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
11191623 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
11191688 TTTTCAAAT-GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
11191752 -AAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCCTGAAAATAATTTTAAA
388 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAA-AATTTTAAA
* *
11191816 AAATCACCGAACCGC-AAAAGTTTTGAAAAATCCCATG-AAAATAG-AAATGAGTTGTCTTGCCA
451 AAATC-CCGAACCGCAAAAAG-TTTG-AAAAT--CATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
11191878 TGAAACTTCACGTGAAGGCTTAAGGGACC-TTGTATG-ATTTACAAGCCGTAAAAATGGCATTGG
511 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-G
* *
11191941 GCATG-TGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
575 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* ***
11192005 CCCGTCTCTTTGGTAAGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTT-GCTTA
640 CCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
11192069 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGATGGGTTGGGACAGTAGGATCGA
697 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGGTTGCGACAGCAGGATCGA
* * * * * * *
11192134 TAGCATGCAGAGGGGGACCCGGA-TGATCCTCGACTTGC-CTATCCCGTCGCTCTGGCCGGCTGA
761 CAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGC-ATCCCGCCCCTCTGGCCGGCTGA
11192197 ------G--CG--C----C---------C----GCATACGGAGTTCATTCCCAGTCTAA
824 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
11192229 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGCACCGAGGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
11192294 CTCGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAGAACTTGTA-CGGC
66 CTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTG-ACCGAC
* * * * * *
11192358 GGTATTAGGGTTCCGACGATCGGGGGTGCCGGGAGGGTGTGCACACATGATGTGAGATGGTTGCT
130 GGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * * *
11192423 GGTGCTTTGCGCTAATATTGGCCCCCTATTCCTCATCAATCCGT-GAGAACTCACACCCCCTTAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAA
* *
11192487 AGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * **
11192552 TTTTCAAATGGCCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTT-TTTATGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
11192616 AAAAAATACAAGGATGACGTCTACCAAGTTTGGTGCCAAAACTCCATCCGAAAAAATTTTTAAAA
388 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * *
11192681 ATCTCGAACCGCAGAAAGTTTTGAAAATTATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
453 ATCCCGAACCGCAAAAAG-TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
11192746 TTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
517 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * *
11192811 GAAATATGATGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
582 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
11192876 CTCTGGCCGACGTAGTGCCCGCCCGCCCTCCCGATCGTTTCGTCGGTTGGCTTGGGCATACGGAG
647 CTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * ** * *
11192941 ATCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGGGGTAGTAGGATCGACAGCACACAGAG
708 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAG
* *
11193006 GGGGACCCAGA-CGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCT
773 GGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * * *
11193070 CGTTTTGTGGGTTAACTTTGGCATACGAAATTCATTCCCAATCTAA
837 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
11193116 GCATATGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGTGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11193181 CTTGGGCATCTGCTGGTGTCGCATTTTTCTTC-ACCGGGCACCATCATCGGAGCATCACCGGAGA
66 C-TCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--CATC---G--T---CGGAGA
* * *
11193245 ACCTGACCGACGGCATTGGGATTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCAAATGATGTGC
119 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
11193310 GATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAACTCACA
184 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
11193375 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTATCAGAAATG
249 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** * *
11193440 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGCTTTTAGCTGAATTTTTTTGA
314 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
11193505 GCATGCCAAC-AAAATAGAAGGATTCACGTCTACCAAGTTTGGGAGCCAAAACTACTTCCGGAAA
379 GCATGCCAACAAAAATACAAGGA-TCACGTCTACCAAGTTTGGG-GCCAAAACTCCTTCC-GAAA
* * * ** *
11193569 AAAGTTT-AAAAATCCTGAACCGTAAAAAGTTTTTAAATCATGAAAAATAGAAAATGAGTCGTCT
441 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
11193633 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTGTATGAATTTACAAGCCATAAAAATGG
506 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TTGTATGAATTTACAAGCCATAAAAATGG
* *
11193698 CATTGGCATGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-
570 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
11193762 -GCA-CTCGTCTCTCCTGGCCGGCGTAGTGTGCCC-CGCC-CCCGCTCGTTTTCGTCGGTTGGCT
635 CGCATCCCGTCTCT-CTGGCCGGCGTA--GTGCCCGC-CCGCCCGCTCG-TTTCGTCGGTTGGCT
* * *
11193823 TAGGCA-ACGGAGTTCATT-CCAGTCTAAGAT--G-CCAGACATGAGGG-TG-TATGAGCAGGAT
695 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-CGAGGGTTGCGA-CAGCAGGAT
* * * * * **
11193881 C-A-TGCA-ACAGAGGGGGTCCCGA-CGATCCCCGGCTTGTGCAT-CCG-CCCTCTAGCCGATTG
758 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
11193940 AGCGCCCGCA--CTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
823 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
11193998 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-TGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT-GG
11194062 GCTCGGCAATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCTCGGAGA
65 GCTCGGC-ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G----TCGGAGA
*
11194127 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
119 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
11194192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCTCGAGAACTCAC
184 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CCTCGAGAACTCAC
11194257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11194322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTG
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
11194386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAAGTTT-GGGCCAAAACTCCTTCCG-AAA
378 TGCATGCCAACAAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
11194449 AATTTT-AAAAATCCCGAACCACAAAAAGTTTTG-AAATCGTG-AAAATAGAAAATGAGGTCCGT
442 AATTTTAAAAAATCCCGAACCGCAAAAAG-TTTGAAAATCATGAAAAATAGAAAACGA-GT-CGT
* * *
11194511 CTTGCCATGAAACTTCACATG-AGGCTTAA-GGACCGTTGTATG-ATTTACCAGCCTATAAAAAT
504 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-ATAAAAAT
* * * * * *
11194573 AGCATTGGCACGTAAAAATATCAAGAGTGTGCCTAAACCCACTTACCACCCTATCGATCCA-GGC
568 GGCATTGGCATGCAGAAATATGAAGA-TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
11194637 TTGCG-ATCCC-TCTCTCTGGCCGACGTAGTG-CCGCCCGGCCCACCCCTCGTCTTTCATCGATT
632 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-G--C-CCGCTCG--TTTCGTCGGTT
* *
11194699 -GCTTAGGCATACGGAGTTCATT-CCAGTCTAAGAT-TG----GACTGAGGGTT---AC-GCA-G
691 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGG
* * * *
11194752 ATCG---TCAC-C-GAGTGGGA-CCGATCGAT-CCC-GCTT--GCAT--CG------TGGCCGGT
756 ATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
11194799 TGAG-G-CCGCACGCTC---T--T---TT--C-TAGGCGTACGGAGTTCATTCCCAGTC---
821 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11194845 G-AT-CGGAAG--CATT--C-GTCT-CGAT-AGA-C--ACTGA-GG--GCTG--GCAC--GAT--
1 GCATACGG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
***
11194889 GCT--G---GTG-T-G-G--G-ATTTTTCTT-GTTACGG-A--ATCG-CGGAG-A----A---A-
65 GCTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGAC
*
11194929 ---ATTGGGGTTCCG-CGATCGGGGGGTC-GGGGGGTGTGCGCACAATGATGTGCGATGGGTGCT
130 GGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCAC-ATGATGTGCGATGGGTGCT
* * * *
11194989 GGTAATTGGCCCTTATATTGGTCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCTTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
11195054 GAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
11195119 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAATTTTTTTGTGCATGCCAAC
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * *
11195184 AAAAATACAAGGATCACGTCTACCAGGTTTGGGACCCAAACTCATTTCGAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * *
11195249 TCCCCAATCGCAAAAAGTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTT
454 TCCCGAACCGCAAAAAGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
11195314 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
519 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * * *
11195379 AATAGGAAGATGTACCTAAACCCACCTACCA-CCTATCGATCCACAGCTTACGCATCCCGTCTCT
584 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
*
11195443 CTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCTCGGTCGTTTCATCGGTTGGCTTAGGCATACGG
649 CTGGCCGGCGTAGTG--C--CCGCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * *
11195508 AGTTCATTCTCAGTCTAAGATCAAACC-GAACTGAGGGTTGC-AGTAGCAGAATCGACAGCACGC
706 AGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGA-CAGCAGGATCGACAGCACGC
* * * * **
11195571 AGAGGGGGAGCCGACCGATCCCCGGCTTGCGCAT-CCGTCCCTTTGGTCGGCTGA--G-ATG--C
769 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
11195630 -CTCG---C-TAGCTT-A-TT-----T-CGTG-GTTGA----C--T-T-A
834 GCTCGTTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCCCAGTCTAA
* *
11195658 GCATACGGAGTTCATT-CCAGTCTAAGATCGGA-CGGACCAAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11195721 CTAAGGGCATGTGCTGGTGCCACA-TTTTCTTCGTC--GG-AGCATCGCCGGAGAACCTGAACCG
66 CT--CGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTG-ACCG
* * *
11195782 GCAGGCATTGGGGTTCCGACG-TCGAGGGGGCC-GGGGGGTG-GTGCACATGATGTGCAAATGGG
128 AC-GGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGC-GATGGG
11195844 TGGCTGGTACTTGGCCCTT-TATTGGCCCCCTATCCCTCATCAAACCTCAGAGAACTCATGCA-C
190 T-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCA--CACC
* * *
11195907 CCCTTAAAGAGCATTTGAGATTTTACCAAGTTCTGCTGGCCAATAGCCATTAAAGTGTCCTAAAA
251 CCCTTAAAGAGCATTTGAGATTTTA-CAGGTT-TGCT-GCCAGTAGCCATTAAAGTGT-CTGAAA
* * * *
11195972 TGGGG-CACTTTTTTCCAAATTGGTCACAAAATC-TGTACACTTTTGAGTTTTTAGTTGAGTTGT
312 TGGGGACACTTTTTT-CAAA-TGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTT
* * *
11196035 TTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCGA
374 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* ** *
11196100 AAAAATTGTAAAAAATCCAAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
439 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCG
* * *
11196165 TCTTTCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
503 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
11196230 GGTATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGAT
568 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * * * * *
11196295 TATGCATCCCATCTCTCTAGCCGGCGTAGTGCCTGCCCGCCGGCCCGTCCGTTCATCCCGTCGAT
633 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--CGC-T-CGTT--T--CGTCGGT
* ** * *
11196360 TGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAG
690 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAG
* * * * * *
11196425 GATCTG-TAGCACCCAGATGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCG
755 GATC-GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
11196489 GCTGAGCGCTCGCACGCTCGTTTCCTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
819 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
11196553 GCATACGAAGTTCATTCTCAGTCTCAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11196618 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCCGACCGGC
66 CTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGAC
* * * * * *
11196683 GGCATTGGGGTTTCGAAGATCGGGGGGGCCGCGGGGGTGTGCGCACGTCG-TGAGTGATGGGTGC
130 GGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACAT-GATGTGCGATGGGTGC
*
11196747 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
11196812 AGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* ** *
11196877 TTTTCAAATGGTCACAAAATCATGTACACTTTAAGTTTTTAGCTGAATTATTTTGTGCATGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
** *
11196942 CAAAAATACAAGGATCACGTCTAAGAAATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
388 CAAAAATACAAGGATCACGTCT-ACCAA-GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
11197007 AAATCCCGAACCACAAAAAGTTTTGAAAATCGTGGAAAATAGAAAACGAGTCGTCTTGCCATGAA
451 AAATCCCGAACCGCAAAAAG-TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * **
11197072 ACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACA
515 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * ** * * *
11197137 CAAAAATATCAAGATGTGCCTAAACCCATTTACCACCCTATCGATCCATGGCTTACGTATCCCGT
580 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
** * *
11197202 CTCTCTGGCCTACGTAGTGCCCGACCGCCCGCCTACCCACCCGCCCGCACATTTCATCGGTTGGC
645 CTCTCTGGCCGGCGTAGTG--C--CCGCCCG--------CCCGCTCG----TTTCGTCGGTTGGC
* * ** * ** * *
11197267 TTAGGCATACAGAGTTCATTCCCAGACTAAGATTGGACC-GAACTGAGTTTTGTGATAGCAGGAT
694 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGACAGCAGGAT
* ** * * * * * * *
11197331 TGGTAGCACGTAGACGAGGACCCGACTGATCCCCGGTTTGCGCAACCCACCCCTCTGGCCGGCTG
758 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
11197396 AGCGCCCGCACGCTCATTTTGTGGGTT-AGCTTAGGCGTACGGAGTTCATTCCCAGTCTAA
823 AGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11197456 G-AT-C--AG---------A--C------CGGACC-G---TA-GGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11197495 CTCGGGCATTTGCTGGTGCCGCATTTTTCTTTGCCGAGGCACCATCCCTGGAGCATCGCCGGAGA
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--C----G--T---CGGAGA
* * ** *
11197560 ACCTGACCG-GGGCATTGGGGTTCTGGTGATCGGGGGGGCC-GGGGGGTGTGCGCACTTGATGTG
119 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
11197623 CGAT-GGTGCTGGTGCTTGGCCCTTCTATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCAC
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
11197687 ACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11197752 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTA
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-
* * ** *
11197817 G-GCATTCCAACAAAAATACAAGGATCACGTGTACCAAGTTTGGGGAGAAAACTCTTTCCGAAAA
377 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** * *
11197881 AAGTTTAAAAAATCCCTAACCAAAAAAAGTTTCGAAAATCGTGAAAAAGAGAAAACGAGTCGTCT
442 AATTTTAAAAAATCCCGAACCGCAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
11197946 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATAGC
506 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
11198011 ATTGGCATGAAAAAATATCAAGATGTGCCTAAACCAACTTACCACCCTATCGATCCATGGCTTGC
571 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
11198076 GTATCCCGTCTCTCTGGCCGACGTAGTGCCCGACCGATCGCCCGCCCGCACATTTCATCGGTTGG
636 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC---CGCCCGCTCG----TTTCGTCGGTTGG
* ** * ** * *
11198141 CTTAGGCATACGGAGTTCATTCCCAGACTAAGATTGGACC-GAACTGAGTTTTGTGATAGCAGGA
693 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGACAGCAGGA
* ** * ** * * *
11198205 TTGGTAGCACGCAGACGGGGACCCGATTGATCCCCGACTTGCGCATCCCACCCCTCTCGCCGGCT
757 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** * * *
11198270 GAGCGCCCGCACGCTAATTTTGTGGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAA
822 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
11198331 G-AT-C-G-G---A----C---C----A---GACC-G---TA-GGTTATGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11198370 CTCGGGCATGTGCTGGTGCTGCTTTTTTCTTTGCCGGGGCACCATCCCTGGAGCATCGTCGGAGA
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA---C-----CATCGTCGGAGA
* ** *
11198435 ACCTGACCG-GGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACTTGATGTG
119 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
11198499 CGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCATATCCCTTATCAAACCTCGAGAACTCAC
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
11198564 ACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11198629 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTA
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-
* * ** * *
11198694 G-GCATTCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGAGAAAACACTTTCCGAAAA
377 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
11198758 AAGTTTAAAAAATCCCTAACCGGAAAAAGTTTCGAAAATCGTGAAAAAGAGAAAACGAGTCATCT
442 AATTTTAAAAAATCCCGAACCGCAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
11198823 TGCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATGAAAATGGC
506 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** *
11198888 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGC
571 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
11198953 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTA
636 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGGCTTA
* * *
11199018 AGCATACAGAGTTCATTCCCAGTTTAAG
697 GGCATACGGAGTTCATTCCCAGTCTAAG
11199046 CATGCTCGCT
Statistics
Matches: 12157, Mismatches: 1243, Indels: 1072
0.84 0.09 0.07
Matches are distributed among these distances:
786 153 0.01
787 124 0.01
788 59 0.00
789 62 0.01
790 60 0.00
791 29 0.00
792 2 0.00
793 1 0.00
794 11 0.00
795 24 0.00
796 20 0.00
799 1 0.00
800 6 0.00
801 10 0.00
803 1 0.00
805 4 0.00
806 4 0.00
808 1 0.00
809 3 0.00
810 1 0.00
811 9 0.00
812 9 0.00
813 5 0.00
814 13 0.00
815 12 0.00
816 9 0.00
817 3 0.00
818 11 0.00
819 9 0.00
820 6 0.00
821 3 0.00
822 5 0.00
823 13 0.00
824 1 0.00
825 4 0.00
827 7 0.00
829 2 0.00
830 2 0.00
831 3 0.00
832 4 0.00
834 3 0.00
835 3 0.00
836 4 0.00
838 4 0.00
839 3 0.00
840 4 0.00
841 5 0.00
842 4 0.00
843 7 0.00
844 11 0.00
845 8 0.00
846 5 0.00
847 1 0.00
850 24 0.00
851 2 0.00
853 2 0.00
856 1 0.00
858 10 0.00
859 58 0.00
860 147 0.01
861 88 0.01
862 70 0.01
863 107 0.01
864 392 0.03
865 108 0.01
866 125 0.01
867 134 0.01
868 143 0.01
869 22 0.00
870 8 0.00
871 11 0.00
872 4 0.00
873 46 0.00
874 8 0.00
875 325 0.03
876 42 0.00
877 581 0.05
878 69 0.01
879 71 0.01
880 86 0.01
881 134 0.01
882 355 0.03
883 559 0.05
884 285 0.02
885 500 0.04
886 275 0.02
887 996 0.08
888 708 0.06
889 303 0.02
890 110 0.01
891 181 0.01
892 373 0.03
893 514 0.04
894 188 0.02
895 634 0.05
896 202 0.02
897 824 0.07
898 391 0.03
899 399 0.03
900 72 0.01
901 10 0.00
902 6 0.00
903 317 0.03
904 198 0.02
905 167 0.01
907 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (882 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACG
GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCC
GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11191368 original size:26 final size:26
Alignment explanation
Indices: 11191339--11191391 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11191329 GTTGACTTAG
11191339 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11191365 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11191391 G
1 G
11191392 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11192239 original size:26 final size:26
Alignment explanation
Indices: 11192203--11192255 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11192193 CTGAGCGCCC
11192203 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11192229 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11192255 G
1 G
11192256 ATCAGACTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11194008 original size:26 final size:26
Alignment explanation
Indices: 11193972--11194024 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11193962 GTTGACTTAG
*
11193972 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11193998 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11194024 G
1 G
11194025 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11196564 original size:26 final size:26
Alignment explanation
Indices: 11196527--11196576 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11196517 GTTGACTTAG
*
11196527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
11196553 GCATACGAAGTTCATTCTCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
11196577 CAGATCAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11199133 original size:26 final size:26
Alignment explanation
Indices: 11199104--11199156 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11199094 GTTGACTTAG
* *
11199104 GCATACGGAGTTCATTCCAAGTTTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
* *
11199130 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
11199156 G
1 G
11199157 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:11205959 original size:26 final size:26
Alignment explanation
Indices: 11205923--11205975 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11205913 GTTGACTTAG
11205923 GCATACGGAGTTCATT-CCAAGTCTAA
1 GCATACGGAGTTCATTACCAA-TCTAA
11205949 GCATACGGAGTTCATTACCAATCTAA
1 GCATACGGAGTTCATTACCAATCTAA
11205975 G
1 G
11205976 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAATCTAA
Found at i:11207634 original size:159 final size:159
Alignment explanation
Indices: 11207352--11207719 Score: 434
Period size: 159 Copynumber: 2.3 Consensus size: 159
11207342 CCGCCCGCCT
* * * * * ** *
11207352 GCTCATTTTGTCGGTTGGCTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGA
1 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCAGACCGA
* * * * *
11207417 GGGTTGCAGTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGTATCC
66 GGGTTGCAGCAGCAAGATCGGTAACATGCAGAGGGGCACCCGACCGATCCTCGGCTTGCGCATCC
*
11207482 CACCCCTCTGGTAGGCTGAGCACCCGCAC
131 CACCCCTCTGGCAGGCTGAGCACCCGCAC
*
11207511 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGATCAGACCAGACCGA
1 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCAGACCGA
** *
11207576 GGGTTGTGGCAGCAAGATCGGTAACATGTAGAGGGGCACCCGACCGATCC-CTGGCTTGCGCATC
66 GGGTTGCAGCAGCAAGATCGGTAACATGCAGAGGGGCACCCGACCGATCCTC-GGCTTGCGCATC
** * * *** * *
11207640 CTGCCCCTCTGGCCGGTTGATTGCCTGTAC
130 CCACCCCTCTGGCAGGCTGAGCACCCGCAC
* * *
11207670 GCTCGTTTCGTGGGTTGACTTAGGCATACATAGTTCATTCCCTA-TCTAAG
1 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAATCCC-AGTCTAAG
11207720 CATACGGAGT
Statistics
Matches: 176, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
158 1 0.01
159 174 0.99
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (159 bp):
GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCAGACCGA
GGGTTGCAGCAGCAAGATCGGTAACATGCAGAGGGGCACCCGACCGATCCTCGGCTTGCGCATCC
CACCCCTCTGGCAGGCTGAGCACCCGCAC
Found at i:11208603 original size:25 final size:28
Alignment explanation
Indices: 11208563--11208616 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 28
11208553 GTTGACTTAG
*
11208563 GCATACTGGGGTTCA-TTC-CAGTCTAA
1 GCATACTGGAGTTCATTTCACAGTCTAA
11208589 GCATAC-GGAGTTCATTTCACAGTCTAA
1 GCATACTGGAGTTCATTTCACAGTCTAA
11208616 G
1 G
11208617 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 7 0.28
26 9 0.36
27 9 0.36
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (28 bp):
GCATACTGGAGTTCATTTCACAGTCTAA
Found at i:11209881 original size:825 final size:830
Alignment explanation
Indices: 11208284--11209943 Score: 2135
Period size: 833 Copynumber: 2.0 Consensus size: 830
11208274 CACGCAGAAA
* * *
11208284 CATGAAGTTGTGCCTAAACTCACCTACCACCCTATCGATCCACGACTTGCGCATCCTGTCTCTCT
1 CATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTGTCTCTCT
* * * *
11208349 GGCCGGCGTAGTGCCCGCCCACCTGCCCGTCCGCTCATTTTATCGGTTGTCTTAGGCATACGGAG
66 GGCCGGCATAGTGCCCGCCCACCTACCCGTCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAG
* ** * * * * * *
11208414 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCTGTAGCAGGATCTCCAGCATGTAGAT
131 TTAATTCCCAGTCTAAGATCAAACCAGACCGAGGGGTGCTGTAGCAGGATCGCCAACACGCAGAG
** * * *
11208479 GGGCACCCGATTGAACCCCGACTTGTGCATCTCGCGCCTCTGGCCGGTTGAGCACCCGCACGCTT
196 GGGCACCCGACCGAACCCCGACTTGTGCATCTCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
* * * * ** *
11208544 GTTTCGCAGGTTGACTTAGGCATACTGGGGTTCATTCCAGTCTAAGCATACGGAGTTCATTTCAC
261 ATTTCACAGGTCGACTTAGGCAAACTGAAGTTCATTCCAGTCTAAGCATACGGAGATCATTTCAC
* * * * *
11208609 AGTCTAAGATCGGACCAGACCCAAGGGTTGTGCGGTAGCAGCATGCTGGGCTCGGCATGTGTTGG
326 AGTCTAAGATCAGACCAGACCCAAGGGTTAT-CGGCAGCAGCATGCTGGGCACGGCATGTGCTGG
* * * * *
11208674 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAGAACCTGATCGGCGGCATT
390 TGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGAGAACCTGACCAGCGGCATT
*
11208739 GGGTTCTCGACGATCGAGGGCCCGGGGGGTGTGCGCCACGACTGATTGTGATGGGTGATGGTAGT
455 GGGTTCTCGACGATCGAGGGCCCGGGGGGTGTGCGCCACGACTGATTGTGATGGGTGATGGTACT
* *
11208804 TGGCCCTTATATTGAGCCCCCTATCCCTCACAAACCTCAAGAACTCTAAGACCCCTTTAAAGAGC
520 TGGCCCTTATATTGAGCCCCCTATCCCTCACAAACCTCAAGAACTC-AACACCCCCTTAAAGAGC
* * *
11208869 ATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGTGGTCCTGAAATGGGGCCACTTTTTC
584 ATTTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAGTGGTCCTGAAACGGGGACACTTTTTC
*
11208934 AAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
649 AAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * *
11208999 ATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAATTTTTAAAAAATCCC
714 ATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCC
* *
11209064 AAACCATAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGC
779 AAACC-GAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
11209117 CATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATTCC-GTCTCTT
1 CATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA-TCCTGTCTCTC
* * * *
11209181 TGGCCGGCATAGTGCTCGCCCGCCTACCTG-CTCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
65 TGGCCGGCATAGTGCCCGCCCACCTACCCGTC-CGCTCATTTCATCGGTTGGCTTAGGCATACGG
* ** * *
11209245 AGTTAATTCTCAGTCTAAGATCAAACCAGATTGAGGGGTG-TGGTAGCAGGATCGGCAATACGCA
129 AGTTAATTCCCAGTCTAAGATCAAACCAGACCGAGGGGTGCT-GTAGCAGGATCGCCAACACGCA
* * * * * *
11209309 GAGGGGGACCTGACCGATCCCCG-GTT-TCGCATC-CTGCCCCTCTGGCTGGCTGAGCGCCCGCA
193 GAGGGGCACCCGACCGAACCCCGACTTGT-GCATCTC-GCCCCTCTGGCCGGCTGAGCACCCGCA
* **
11209371 TGCTCATTTCATGGGTCGACTTAGGCAAAC-GAAGTTCATTCCTAGTCTAAGCATACGGAGATCA
256 CGCTCATTTCACAGGTCGACTTAGGCAAACTGAAGTTCATTCC-AGTCTAAGCATACGGAGATCA
* * *
11209435 -TTCCCAGTCTAAGATCAGACCAGA-CCGAGGGTTAT-GGCAGCA-CATGCTGGTCACGGGCATG
320 TTTCACAGTCTAAGATCAGACCAGACCCAAGGGTTATCGGCAGCAGCATGCTGGGCAC-GGCATG
* *
11209496 TGCTGGTGTCACATTTTTCTTTGCCGGGGCACCATCG-CAGGAGCATCGCCTGAGAACCTGACCA
384 TGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCATCGCC-GAGAACCTGACCA
* * * *
11209560 GTGGCATTGGGGTT-TCGGCGATCGGGGGGGCCGGGGGGTGTGCG-CAC-A-TGA-TGTGCAATG
447 GCGGCATT-GGGTTCTCGACGATC-GAGGGCCCGGGGGGTGTGCGCCACGACTGATTGTG--ATG
* *
11209620 GGTGCTGGTACTTGGCCCTTATATTG-GCCCCCTAT-CCTCATCAAACCTCGAGAACTC-ACACC
508 GGTGATGGTACTTGGCCCTTATATTGAGCCCCCTATCCCTCA-CAAACCTCAAGAACTCAACACC
*
11209682 CCCTT-AAGAAGCA-TTTGAGATTTTACAGGTTTATTGCCAGTAGCCATTAAAGT-GT-CTGAAA
572 CCCTTAAAG-AGCATTTTGAGATTTTACAGGTTTACTGCCAGTAGCCATT--AGTGGTCCTGAAA
* *
11209743 CGGGGACACTTTTTACAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
634 CGGGGACACTTTTT-CAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
11209808 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAA
698 GTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * * ** *
11209873 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
763 AATTTTAAAAAATCCCAAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
11209938 TGC
828 TGC
11209941 CAT
1 CAT
11209944 TAAACTTCAC
Statistics
Matches: 717, Mismatches: 92, Indels: 45
0.84 0.11 0.05
Matches are distributed among these distances:
824 98 0.14
825 140 0.20
826 12 0.02
827 38 0.05
828 82 0.11
829 29 0.04
830 32 0.04
831 34 0.05
832 74 0.10
833 175 0.24
834 3 0.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (830 bp):
CATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTGTCTCTCT
GGCCGGCATAGTGCCCGCCCACCTACCCGTCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAG
TTAATTCCCAGTCTAAGATCAAACCAGACCGAGGGGTGCTGTAGCAGGATCGCCAACACGCAGAG
GGGCACCCGACCGAACCCCGACTTGTGCATCTCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
ATTTCACAGGTCGACTTAGGCAAACTGAAGTTCATTCCAGTCTAAGCATACGGAGATCATTTCAC
AGTCTAAGATCAGACCAGACCCAAGGGTTATCGGCAGCAGCATGCTGGGCACGGCATGTGCTGGT
GCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGAGAACCTGACCAGCGGCATTG
GGTTCTCGACGATCGAGGGCCCGGGGGGTGTGCGCCACGACTGATTGTGATGGGTGATGGTACTT
GGCCCTTATATTGAGCCCCCTATCCCTCACAAACCTCAAGAACTCAACACCCCCTTAAAGAGCAT
TTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAGTGGTCCTGAAACGGGGACACTTTTTCAA
AAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
ACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAA
ACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
Found at i:11210329 original size:26 final size:26
Alignment explanation
Indices: 11210300--11210349 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11210290 GACTTAGGTG
*
11210300 TACGAAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTATAAGCA
*
11210326 TACGGAGTTCATTCCCAGTATAAG
1 TACGAAGTTCATTCCCAGTATAAG
11210350 ATAGGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTATAAGCA
Found at i:11211232 original size:26 final size:26
Alignment explanation
Indices: 11211203--11211255 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11211193 GTTGACTTAG
* * *
11211203 GCATACGGAGTTTATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11211229 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11211255 G
1 G
11211256 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11212131 original size:26 final size:26
Alignment explanation
Indices: 11212095--11212147 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11212085 GTTGACTTAG
*
11212095 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
11212121 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
11212147 G
1 G
11212148 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:11213922 original size:26 final size:26
Alignment explanation
Indices: 11213883--11213938 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
11213873 TGTGTTGACT
11213883 TAAGCATACAGAGTTCATT-CCTAGTC
1 TAAGCATACAGAGTTCATTGCC-AGTC
*
11213909 TAAGCATACGGAGTTCATTGCCAGTC
1 TAAGCATACAGAGTTCATTGCCAGTC
11213935 TAAG
1 TAAG
11213939 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTGCCAGTC
Found at i:11214535 original size:894 final size:897
Alignment explanation
Indices: 11209118--11216050 Score: 8345
Period size: 894 Copynumber: 7.8 Consensus size: 897
11209108 TTGTCTTGCC
* * *
11209118 ATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATTCCGTCTCTTTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * ** * * *
11209183 GCCGGCATAGTGCTCGCCCGCCTACCTGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * *** * * * * **
11209248 TAATTCTCAGTCTAAGATCAAACCAGA-TTGAGGGGTGTGGTAGCAGGATCGGCAATACGCAGAG
131 TCATTCCCAGTCTAAGATTGGACCAGACCT-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * * *
11209312 GGGGACCTGACCGATCCCCGG-TTTCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCATGCTC
195 GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * *
11209376 ATTTCATGGGTCGACTTAGGCAAACGAAGTTCATTCCTAGTCTAAGCATACGGAGATCATTCCCA
260 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
11209441 GTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCACATGCTGGTCACGGGCATGTGCTGGTG-T
325 GTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT
* * * * * *
11209505 CACATTTTTCTTTGCCGGGGCACCATCGCAGGAGCATCGCCTGAGAACCTGACC-AGTGGCATTG
390 -GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTG
*
11209569 GGGTTTCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTT
453 GGG-TTC-GCGATC----GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
11209633 GGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCACACCCCCTT-AAGAAGCAT
512 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTTAAAG-AGCAT
** * *
11209696 TTGAGATTTTACAGGTTTATTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTACAA
575 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
11209761 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
640 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
*
11209826 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAAT-CTCG
705 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT-G
* ** *
11209890 AACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACG
769 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * * *
11209955 TGAAGGCCTAAGGGACCATTGTATGAATTTA-AAGCCATAAAAATGGCATTGGTACGTATAAAT
834 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * * * *
11210018 ATGAGGATGTACCTGAACCCACTTGCCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
** * * * * *
11210083 GTTGACGTAGTGCCCGCCCGCCCGCCTGCCCACTCG-TTCTGTTGGTTGGCTTAGGCATACAGAG
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTC-GTCGGTTGGCTTAGGCATACGGAG
* * * * * ** * *
11210147 TGCATTCCCAAGTCGAAGATCGGACCGGACCAAGGGTTATGGCAGCAGGATCGACAGCACACAGA
130 TTCATTCCC-AGTCTAAGATTGGACCAGACCTAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * *
11210212 GGGGGGCCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTTTGGCCAGCTGAGCGCCCGCACGCT
194 GGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* ** * *
11210277 CGTTCCATGGGTTGACTTAGGTGTACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
259 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
11210342 AGTATAAGATAGGATCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
324 AGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * *** *
11210407 CGCATTTCTCTTCGTCGGGGCACCATTGTTAGAGCATCATCGGAGAACCTGACCGGA-GGCATTG
389 TGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC-GACGGCATTG
* *
11210471 GGGTTCAGGCGATCGAGGGGGCCGGGGGGAGTGTGCACACATGATGTCCGATGGGTGCTGGTACT
453 GGGTTC--GCGATC----GGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
11210536 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
511 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCACACCCCCTTAAAGAGCAT
11210601 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
575 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
11210666 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
640 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * **
11210731 ACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTATAAAAAATCCCAA
705 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGA
* * *
11210796 ACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGT
770 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
11210861 GAAGACTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATAGCATTGGCATGCAGAAAT
835 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
11210924 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTA
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * ** *
11210989 GCCGGCGTAGTGCCTGCCCGCCCGCTCGCCCATTTGTTTCGTCGGTTGGCTTAGGCATACGGAGT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * ** *
11211054 TCATTCCCAATCTAGGATTGGATCAGACCGAGGGTTGCGGCAGCCGGAAT-GATAGCATGCAGAG
131 TCATTCCCAGTCTAAGATTGGACCAGACCTAGGGTTGCGGCAGCAGG-ATCGGCAGCACGCAGAG
* * ** * * * *
11211118 TGGGACTCGGTCGATCC-CTGGCTTGCGCATCCTGCCCTTCTGGCCTGTTGAGCGCCCGCACGCT
195 GGGGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
11211182 CGTTTCTTTGGGTTGACTTAGGCATACGGAGTTTATTCCCT-GTCTAAGCATACGAAGTTCATTC
259 CGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATT-CCTAGTCTAAGCATACGGAGTTCATTC
* *
11211246 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGCCAGCACATGCTGGGCTCGGGCATGTGCTGGT
322 CCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * * *
11211311 G-TCGTATTTTTCATCGTCGAGG------CG-C---G-ATAGTCGAAGAACCTGACTGACGGCAT
387 GCT-GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * * * *
11211364 TGGGGTTTCGGCAATCAGGGGGGCCGGGGGGGATGTGCACACTTGATGTGTGATGGGTGCTGGTG
451 TGGGG-TTC-GCGATC----GGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTA
11211429 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
509 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTTAAAGAGC
*
11211494 ATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
573 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * **
11211559 AAATGGTCACAAAATCTTGTACACTTCTACTTTTTAGAAGAATTTTTTTGTGCATGCCAACAAAA
638 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
11211624 ATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCC
703 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT
* * *
11211688 AAACCGTAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCAC
768 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
**
11211753 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
833 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
11211818 ATGAAGATGTGCCTAAACCCACCAACCACACTATCGATCCACAGCTTGCGCATCCCGTCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* ** * * * * *
11211883 GCCGACGTAGTGCCCATCGGCCCACCCACCCGCTCGTTTCATCGGTTGGCTTAGGCGTACGGAGT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * ** *
11211948 TCATTCGCAGTCTAAGATTGGA-CTGAACCAAGGGCTACGATAGTAGGATCGGCAGCACGCAGA-
131 TCATTCCCAGTCTAAGATTGGACCAG-ACCTAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * *
11212011 GGCGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGCACGCTC
195 GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
11212076 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CTCAGTCTAAGCATATGGAGTTCATTCAC
260 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCT-AGTCTAAGCATACGGAGTTCATTCCC
* ** * * * *
11212140 AGTCTAAGATCAGATTGGACCGAGGGTTGCAGCAGTACATGCTGGGCTTGGGCATGTGCTGGTGC
324 AGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * ** *
11212205 CGCATTTTTCTTCACCGGGGCACCATGGTCGGAGCATCACCGGAGAACCTGACCAACGGCATTGG
389 TGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
* ** * * *
11212270 GGTTCCGATGATCGGGGGGCGGGGGGTGTGCCCACAAGATGTGCGATGGGTGCTGGTACATGGCC
454 GGTT-CG-CGATCGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
11212335 CTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
516 CTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTTAAAGAGCATTTGAG
*
11212400 ATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
580 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
11212465 CACAAAATCTTGTACACTTCAAGTTTTTAGCT-AACTTTTTTTGTGCATGCCAACAAAAATACAA
645 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAA
* ***
11212529 GGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCC---A-C-
709 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCG
* ** * * * * *
11212589 -AGAAAGTTTTGAAAATCGTGAAAAATAGAAAAGGAATCGTCTTGCCAAGAAACATCACATGAAG
774 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * ** * *
11212653 GCTTAAGGGACCATTGTAAGAATTTACAAGCCTTAAAAATAACATTGGCACGTAGAAAT
839 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
11212712 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGTGCATCCCGTCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * **
11212777 GCCAGCATAGT----GCCCGCCCGCCCGCCCGCTCTTTTCGTCTATTGGCTTAGGCATACGGAGT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * *
11212838 TCA-TCCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGTAGAG
131 TCATTCCC-AGTCTAAGATTGGACCAGACCTAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * * * * * ** *
11212902 AGAGACCAGGCCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCTGGCTGAGCGCTTGCAAGCTC
195 GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * **
11212967 GTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATACC-AGTCT-AGCCATGTGGAGTTCATTCCC
260 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-CATACGGAGTTCATTCCC
* * * * *
11213030 AGTCTAAGATCAGATCGAACCGAGGGTTACGGTAGCACATGCTGGGCCTCAGGCATGT-CTGGTG
324 AGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG-CTCGGGCATGTGCTGGTG
* *
11213094 CCTGGCA-TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGACCCTGACCGACGGCA-
388 -CT-GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * * *
11213157 TGGGCTTCCAGCGATCACGGG-GGGCTGGGGGTGTGCGCACTTGATGTGCGATGCGTGCTGGTAC
451 TGGGGTT-C-GCGAT--CGGGCCGG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
11213221 TTGGCCCCTATATTGGCCCCCTAT-CCTCATCAAACCTTGAGAAC-CACA-CCCCTTAAAGAGCA
510 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCACACCCCCTTAAAGAGCA
*
11213283 TTTGAGATTTTACAGGTTTGCTGGCCAGTAGCCATTAAAGTGTCCCGAAATGGGGACACTTTTTT
574 TTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTTTTTT
* * *
11213348 CAAATGGTCACAAAAGCTTGCACACTTCGAG-TTTTAGCTGAATTTTTTTGCGCATGCCCAACAA
637 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAA
* **
11213412 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTCAAAAAAATC
701 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* * * * * *
11213477 ATGAACCCTAAAAAGTTT-GAAAATCGTGAAAAATA-AAAACAGAGTCATCTTGCCATTAAACCT
766 CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-GAGTCGTCTTGCCATGAAACTT
* * * * * * *
11213540 CACGTGAAGGCTTAAGGGACCATAAG-ATGAATTTAAAAACCGTAAAAGTGGGATTGGCATGCAA
830 CACGTGAAGGCTTAAGGGACCAT-TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
11213604 AAAT
894 AAAT
* * *
11213608 ATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTA
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* ** * * * *
11213673 GCCGGCGTAGTGCCTGCCCGCCCGCCCGCTAGTTTGTTTCGTCGGTTTGCTCAGGCATACGGAGT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** * * * *
11213738 TCATTCCCAATCTAAGATCAGACCAGATCTAGGGTTGCAGCAGCAGGATTGGCAGCACACAGAGG
131 TCATTCCCAGTCTAAGATTGGACCAGACCTAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * *
11213803 GGGACCCGACCGATCCTCGACTTGCGCATCCCGTCCCTCTGGTCGGCTGAGCGCCCGCACGCTCG
196 GGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * * *
11213868 TTTCTTGTGTTGACTTAAGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTGCCAG
261 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
11213933 TCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAAATGCTAGGCTCGGGCATGTGCTGGTGCTG
326 TCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTG
* * * * * *
11213998 CATTTTTCTTCGCCAGGGTACCATCACCGGAGCATCGTCGGAGAACCGGATCGACGGCATTGAGG
391 CATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGG
* **
11214063 TTC-CGA-C-GGCCGGGTGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTACTTGGCCCTTAT
456 TTCGCGATCGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
11214125 ATTGGTCCCCTATCCCTCATCAAACTTTCAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
521 ATTGGCCCCCTATCCCTCATCAAAC-CTCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
11214190 GCAGGTTTGCTGCTAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
585 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
11214255 AATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAC-AAAATACAAGGATCA
650 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * *
11214319 CCTCTTCCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAGCCGTAAAAA
715 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAA
* *
11214384 GTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
780 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
11214449 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
845 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
11214502 ATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCACATCTCGTCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *** *
11214567 GCCGGCGTAGAGCCCGTATG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * *
11214631 TCATTCCTAGTCAAAGATTGGACCAGA-CTGAGGGTTGCGACAGCAAGATTGGCAGCACGCAGAG
131 TCATTCCCAGTCTAAGATTGGACCAGACCT-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
*** *
11214695 GGGGACCCGGTAGATCC-CGGCTTGCGCATCTC-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
195 GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
11214758 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
260 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA
* * *
11214823 GTACTAAGATAGGATCTGGA-CGA-GGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTG
325 GT-CTAAGATCGGA-CCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
11214886 CAGCATTTTTCTTCACCGGGG---CA---CC--AGCATCGTCAGAGAACCTGACCGGCGGCATTG
388 CTGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* ** *
11214943 GGGTTCCGACGATCGGG-GGGCAGGGGGTGTGCGCACATGATGTGTTATGGGTGCTGGTACTTGA
453 GGGTT-CG-CGATCGGGCCGG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
11215007 CCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA-CCCCTTCAAGAGCATTTG
514 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTTAAAGAGCATTTG
* *
11215071 AGATTTTACAGGTTTGTTGCCAATAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAAT
578 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAAT
* * * *
11215135 GGCCACAAAATCTTGTACACTTCAAGTTTCTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAC
642 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
*
11215200 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAAT
707 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAAC
* * *
11215265 TGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGA
772 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
11215330 AGGCTTAAGGGACCATTGTAGGAATTTACTAGCCATCAAAATGGCATTGGCATGCAGAAAT
837 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
11215391 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* ** ** *
11215456 GCCGGCATAGTGCCCGTTCGGTCGCCC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * *
11215520 TCATTCCCAGTCTAAGATTGGACCA-AACTGAGGGTTGTGGCAGCA-GATCGACAGCACGCAGA-
131 TCATTCCCAGTCTAAGATTGGACCAGACCT-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
** * * * * **
11215582 GGGGACCCGGTA-AAATCCTCGGCTTGCGCATCTCGCCTCTCTGGCTGGTTGAGCGCCTACACGC
195 GGGGACCC-G-ACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
11215646 TCATTTCGTGGGTTGACTTAGGCATACGGAGTGCATTCCCAGTCTAA-CAT-C-G-G--------
258 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCC
* *
11215699 -A--C-----T---A---GACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTG
323 CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * ** * * *
11215750 C--CATAATTTTCTTCGTC-GGGCACCATCGTCGGAGCATCACCTGAGAACCT-AACTAGCGGCA
388 CTGCAT--TTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA-CGGCA
* *
11215811 TTGGGGTTCCGGTGATCGGGGGGTCCGGGAGGCGCGGTGTGCGCACATGATGTGCGATGGGTGTT
450 TTGGGGTT-C-GCGATC---GGG-CC-GG-GG-G-GGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
11215876 GGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAAAACTCACACTCCCTTAAA
505 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCACACCCCCTTAAA
* * *
11215941 GAGCATTTGAGA-TTTACAGGTTTACAAG-CAGTAGCCATTAAAGTGTTTGAAAT-GGGACACTT
569 GAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
11216003 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATT
633 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
11216051 NNNNNNNNNN
Statistics
Matches: 5231, Mismatches: 665, Indels: 298
0.84 0.11 0.05
Matches are distributed among these distances:
862 5 0.00
863 6 0.00
864 49 0.01
866 3 0.00
869 2 0.00
870 2 0.00
871 34 0.01
872 1 0.00
874 4 0.00
876 15 0.00
877 46 0.01
878 107 0.02
879 22 0.00
883 32 0.01
884 1 0.00
885 2 0.00
886 4 0.00
887 13 0.00
888 154 0.03
889 468 0.09
890 287 0.05
891 423 0.08
892 213 0.04
893 298 0.06
894 715 0.14
895 356 0.07
896 195 0.04
897 10 0.00
898 6 0.00
899 263 0.05
900 371 0.07
901 137 0.03
902 220 0.04
903 35 0.01
904 57 0.01
905 399 0.08
906 271 0.05
907 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATTGGACCAGACCTAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
GGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTG
CATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGG
TTCGCGATCGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAG
TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
Found at i:11214807 original size:26 final size:27
Alignment explanation
Indices: 11214777--11214830 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
11214767 GTTGACTTAG
11214777 GCATACGGAGTTCATTCCCAGT-CTAA
1 GCATACGGAGTTCATTCCCAGTACTAA
*
11214803 GCATATGGAGTTCATTCCCAGTACTAA
1 GCATACGGAGTTCATTCCCAGTACTAA
11214830 G
1 G
11214831 ATAGGATCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCAGTACTAA
Found at i:11217094 original size:26 final size:26
Alignment explanation
Indices: 11217058--11217110 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11217048 NNNGACTTAG
11217058 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11217084 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11217110 G
1 G
11217111 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11220041 original size:26 final size:26
Alignment explanation
Indices: 11220005--11220083 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
11219995 GTTGACTTAG
11220005 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
11220031 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
11220057 GCATACAGAGTTCATTACCAA-TCTAA
1 GCATACGGAGTTCATT-CCAAGTCTAA
11220083 G
1 G
11220084 ATTGGACCGG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 47 0.92
27 4 0.08
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:11221756 original size:159 final size:159
Alignment explanation
Indices: 11221461--11221828 Score: 443
Period size: 159 Copynumber: 2.3 Consensus size: 159
11221451 CCGCCCGCCT
* * * * * *
11221461 GCTCATTTCGTCGGTTGGCTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * *
11221526 GGGTTGCAGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTACGTATCC
66 GGGTTGCAGCAGCAAGATCGGTAACACGCAGAGGGGCACCCGACCGATCCTCGGCTTACGCATCC
11221591 CACCCCTCTGGCCGGCTGAGCACCCACAC
131 CACCCCTCTGGCCGGCTGAGCACCCACAC
*
11221620 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGATCAGACCAGACCGA
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
** * * * *
11221685 GGGTTGTGGCAGCAAGATCGGTAACATGTAGAGGGGCACCCGATCGATCC-CTGGCTTGCGCATC
66 GGGTTGCAGCAGCAAGATCGGTAACACGCAGAGGGGCACCCGACCGATCCTC-GGCTTACGCATC
** * *** ***
11221749 CTGCCCCTCTGGCCGGTTGATTGCCTGTAC
130 CCACCCCTCTGGCCGGCTGAGCACCCACAC
* *
11221779 GCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCTA-TCTAAG
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAG
11221829 CATACGGAGT
Statistics
Matches: 177, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
158 1 0.01
159 175 0.99
160 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (159 bp):
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
GGGTTGCAGCAGCAAGATCGGTAACACGCAGAGGGGCACCCGACCGATCCTCGGCTTACGCATCC
CACCCCTCTGGCCGGCTGAGCACCCACAC
Found at i:11221831 original size:26 final size:26
Alignment explanation
Indices: 11221802--11221854 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11221792 GTTGACTTAG
* *
11221802 GCATACGTAGTTCATTCCCTA-TCTAA
1 GCATACGGAGTTCAATCCC-AGTCTAA
11221828 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
11221854 G
1 G
11221855 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:11222710 original size:26 final size:26
Alignment explanation
Indices: 11222672--11222724 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11222662 GTTGACTTAG
* *
11222672 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
11222698 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
11222724 G
1 G
11222725 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:11224504 original size:26 final size:26
Alignment explanation
Indices: 11224475--11224524 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11224465 GACTTAGGCG
*
11224475 TACGAAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTATAAGCA
*
11224501 TACGGAGTTCATTCCCAGTATAAG
1 TACGAAGTTCATTCCCAGTATAAG
11224525 ATAGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTATAAGCA
Found at i:11225137 original size:903 final size:901
Alignment explanation
Indices: 11222198--11236184 Score: 16980
Period size: 903 Copynumber: 15.6 Consensus size: 901
11222188 TTTGTAGCTG
* * * * *
11222198 AATACAAGCATCACATCTACCAAGTTTGGTGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCC
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* ** *
11222263 CGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
11222328 CGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
11222393 CATGAAGTTGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * ** *
11222458 GGCCGGCGTAGTGCCCGCCCACCTGCCCGTCCGCTCATTTTATCGGTTGTCTTAGGCATACGGAG
261 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** * * * *
11222523 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCTGTAGCAGGATCTCCACCATGTAGAT
326 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
* * * * * * * *
11222588 GGGCACCCGACCGAACCCCGACTTGTGCATCTCGCGCCTCTGGTCGGCTGAGCACCCGCACGCTC
391 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
** * *
11222653 GTTTCGCAGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACA
456 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
11222718 GTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCC
521 GTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* *
11222783 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGCGGCATT-GG
586 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CCGAGGCATTGGG
* * * * *
11222847 GTTCCGACGATCGGGGGCCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGATGGTAGTTGGCC
650 GTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
11222912 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAGACCCCCTTAAAGAGCATTTGAG
715 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
11222977 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGT
780 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
11223042 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAA
845 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
11223099 AATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA-TTTAAAAAATCC
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
11223163 CAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
11223228 CGTGAAGGCTTAAGGGACCATTGTCTGAATTTA-AAGCCATAAAAATGGCATTGGCATGTAGAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * *
11223292 TATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATTCCGTCTCTTT
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * ** * * *
11223357 GGCCGGCATAGTGCTCGCCCGCCTACCTGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
261 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * ** * * **
11223422 TTAATTCTCAGTCTAAGATCAAACCAGATTGAGGGGTGTGGTAGCAGGATCGGCAATACGCAGAG
326 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
* * *
11223487 GGGGACCTGACCGATCCCCGGCTT-CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTC
391 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * * * *
11223551 ATTTCATGGGTCGACTTAGGCAAACGAAGTTCATTCCTAGTCTAAGCATACGGAGATCATTCCCA
456 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* ** * * *
11223616 GTCTAAGATCA-GACCAGACCGAGGGTTATGGCAGCACATGCTGGTCACGGGCATGTGCTGGTGT
521 GTCTAAGAT-AGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * * *
11223680 CACATTTTTCTTTGCCGGAGCACCATCG-CAGGAGCATCGCCTGAGAACCTGACCAGTGGCATTG
585 CGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACC-GAGGCATTG
* *
11223744 GGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTG
648 GGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
11223809 GCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTGAGAACTCACACCCCCTT-AAGAAGCATT
712 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG-AGCATT
** * *
11223873 TGAGATTTTACAGGTTTATTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTACAAA
776 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
11223938 TGGCCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
841 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
11223999 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCAAAAAAATTTTAAAAAATCC
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
11224064 CGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * * *
11224129 CGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTACGTATAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * * *
11224194 TATGAGGATGTACCTGAACCCACTTGCCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCT
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * * * * * *
11224259 GGTTGACGTAGTGCCCGCCCGCCCGCCTGCCCACTCGTTTTGTTGGTTGGCTTAGGCATACAGAG
261 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * *
11224324 TGCATTCCCAAGTCGAAGATC-GACCGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACACAGA
326 TTCATTCCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGA
* * *
11224388 GGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCT
390 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
11224453 CGTTCCAT-GGTTGACTTAGGCGTACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
455 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* *
11224517 AGTATAAGATAGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
520 AGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * *
11224582 CGCATTTCTCTTCGTCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTGACCGGAGGCATTGG
585 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GAGGCATTGG
* * *
11224647 GGTTCAGGCGATCGAGGGGGCCAGGGGGAGTGTGCACACATGATGTCCGATGGGTGCTGGTACTT
649 GGTTCCGGCGATCG-GGGGGCC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
11224712 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
711 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
11224777 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
776 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
11224842 TGGTCACAAAATCTTGTGCACTTTGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAA
841 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
11224902 AATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTATAAAAAATCC
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
11224967 CAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
11225032 CGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGCAGAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
11225097 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * **
11225162 AGCCGGCGTAGTGCCTGCCCGCCCGCTCGCCCATTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
261 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** * * * ** *
11225227 TTCATTCCCAATCTAGGATTGGATCAGACCGAGGGTTGCGGCAGCCGGAAT-GATAGCATGCAGA
326 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGG-ATCGGCAGCACGCAGA
* * ** * * * * *
11225291 GTGGGACTCGGTCGATCCCTGGCTTGCGCATCCTGCCCTTCTGGCCTGTTGAGCGCCCGCACGCT
390 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
11225356 CGTTTCTTTGGGTTGACTTAGGCATAC-GAATTTATTCCCTGTCTAAGCATAC-GAGTTCATT-C
455 CGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* *
11225418 CAGTCTAA-ATTCGGA-CGGACCGAGGGTTGCGCCAGCAACATGCTGGGCTC-GGCATGTGCTGG
519 CAGTCTAAGA-TAGGACCGGACCGAGGGTTGCGGCAGC-ACATGCTGGGCTCGGGCATGTGCTGG
* * * * * * * * *
11225480 TGTCG--TATTTATGCGTCGAGG------CG-C-GATC-T-GTC-GAAAACTCTCGACTGACGCA
582 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC-CT-GACCGAGGCA
* * * * *
11225532 TTGGGGTTTCGGCAATCAGGGGGG-C-GGGGAT-TGCACACATGGAATGTGTGATGGGTGCTGGT
645 TTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACAT-G-ATGTGCGATGGGTGCTGGT
* *
11225594 GC-TGG-CCTTATATT-GCCCCCTATCCCTCATCAAACCTCAAGAA-TCACACCCCCTTAAAAGA
707 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGA
*
11225655 GCATTTGAGAGTTTTAACAGGTTT-TTGCCAGTAGCCATTAAAGTGTCTG-AAT-GGGACAC-TT
771 GCATTTGAGA-TTTT-ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
11225716 TTTC-AATGGTCACAAAATCTTGTACACTTCTACTTTTTAG-AGACATTTTTTGGTGCATGCCAA
834 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAA
11225779 C-AA
898 CAAA
*
11225782 AATACAAGGATCA-GTCTA-CAAGTTTGGGGTCAAAACT-CTTCC--AAAAA-TTT--AAAAT-C
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* *
11225838 C-AA-CGT-AAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * **
11225900 GGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAACAG-A
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAA
* *
11225964 ATATGAAGATGTGCCTAAACCCTAACCAACCACACT-TCAGATCCCACAGGCTTGCGCAATCCCG
195 ATATGAAGATGTGCCTAAACCC--ACCTACCACCCTATC-GAT-CCAC-GGCTTGCGC-ATCCCG
* * ** * * * *
11226028 TCTCTTCTGGTCGACGTAGTGCCCATCGGCCCACCCACCCGCTCGTTTCATCGG-TGGCTTAGGC
254 TCTC-TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** * * * * ** *
11226092 GTACGGAGTTCAATCCCAGTCTAAGATTGGA-CTGAACAAGGGGTTACGACAGTAGGATCGGCAG
318 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGGTTGCGGTAGCAGGATCGGCAG
* * *
11226156 CACGGCAGA-GGTGACCCGA-CGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCAC
382 CAC-GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
11226219 ACCGGCACGCTCGTTTCGTGGGGTTGACTTAGGGCATTACGGAGTTCATTCTCAGGTCTAAGCAG
446 -CC-GCACGCTCGTTTCGT-GGGTTGACTTA-GGCA-TACGGAGTTCATTCCCA-GTCTAAGCA-
* * ** * *
11226284 TATGG-GTGCATTCCCAGTCTAAGATCA-GATTGGATCCGAGGGTTGC-ACAGTACATGCCTGGG
504 TACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGA-CCGAGGGTTGCGGCAGCACATG-CT-GG
* * * * **
11226346 GCTTGGGCATGTGCTGGGTGCTGCATTTTTCTTC-ACCGGGCACCATCGGTCGGAGCATCACCGG
565 GCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GTCGGAGCATCGTCGG
* ** * *
11226410 AGAACCTGACCAACGGCATTGGGGTTCCGATGATCGGGGGG-CGGGGGGTGTGCCCACAAGATGT
628 AGAACCTGACCGA-GGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
11226474 GCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCTCTATCCCTTATCAAACCTCGAGAACTCA
692 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
11226539 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAA
757 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
11226604 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTT
822 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
11226669 GTGCATGCCAACAAA
887 GTGCATGCCAACAAA
* **
11226684 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAT-C
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* ** * * *
11226748 C--A-C--AGAAAGTTTTGAAAATCGTGAAAAATAGAAAAGGAATCGTCTTG-CAAGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * ** * *
11226807 CATGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCTTAAAAATAACATTGGCACGTAGAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
11226872 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCT
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
11226937 GGCCAGCATAGTGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCTCTTTTCGTCT
261 GGCCGGCGTAGT--------------------GCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* **
11227002 ATTGGCTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAG
306 GTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAG
* * * * * * * *
11227066 CAGGATCGGTAGCACGTAGAGAGAGACCAGGCCAATCCCCGGCTTGCACATCCCGCCCCTCTGGC
370 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
11227131 TGGCTGAGCGCTCGCAAGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TACCAGTCTA
435 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * ** *
11227195 GGCATGTGGAGTTCATTCCCAGTCTAAGATCA-GATCGAACCGAGGGTTATGGTAGCACATGCTG
500 AGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* *
11227259 GGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
564 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * * * *
11227324 GACCCTGACCGACGGCATTGGGCTTCCAGCGATCACGGGGG-CTGGGGGTGTGCGCACTTGATGT
629 GAACCTGACCGA-GGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
11227388 GCGATGCGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
692 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
11227453 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
757 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
11227518 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTT
822 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
**
11227583 ACGCATGCCAACAAA
887 GTGCATGCCAACAAA
* * *
11227598 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTCAAAAAATCC
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * ** * *
11227663 TGAACCCTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * * * * *
11227728 CGTGAAGGCTTAAGGGACCATAGTATGAATTTAAAAACCGTAAAAGTGGGATTGGCATGCAAAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
11227793 TATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCT
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * *
11227858 AGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTGTTTCGTCGGTTTGCTCAGGCATACGGAG
261 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
11227923 TTCATTCCCAATCTAAGATCAGACCAG-TCTAGGGTTGCCAGCAACAGGATTCGGCAGCACACAG
326 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-CGGTAGCAGGA-TCGGCAGCACGCAG
* * * * * *
11227987 A--GGGACCTGATCGATTCCTCGACTTACG-ATCCCG-TCCTCTGCGCC-GCTGAGCGCCCGCAC
389 AGGGGGACCCGACCGA-TCCCCGGCTTGCGCATCCCGCCCCTCTG-GCCGGCTGAGCGCCCGCAC
* * * * *
11228047 GCTCGTTTTCTTGTGTTGAACTTAAGCATACAGAGTTCATTCCTTAGTCTAAGCCATACGAGAGA
452 GCTCG-TTTCGTGGGTTG-ACTTAGGCATACGGAGTTCATTCC-CAGTCTAAG-CATACG-GAG-
* ** * *
11228112 TTCATTTCCCAGTCTAAGATCGGA-CGGGTCGAGGGTGTGCGGCAGCAAATGCTAGGCTCGGGCA
511 TTCA-TTCCCAGTCTAAGATAGGACCGGACCGAGGGT-TGCGGCAGCACATGCTGGGCTCGGGCA
* * * * ** * *
11228176 TTGTGCTGGTGCTGCATTTTTCTTCGCCAGGGTACCAATCACCGGAGCATCGTCGAAGAACCGGA
574 -TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC-ATCGTCGGAGCATCGTCGGAGAACCTGA
* ** **
11228241 TCGACGGCATTGAAGTT-C--CGA-C----GGCCGGGTGGGT-TGCGCACATGATGTAAGATGGG
637 CCGA-GGCATTGGGGTTCCGGCGATCGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGG
* *
11228297 TGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACTTTC-AGAACTCACACCCCC
700 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC-CTCGAGAACTCACACCCCC
* * *
11228361 TTAAAGAGCATTTGAGATTTTTGCAGGTTTCCTGCTCAG-AACACATTAAAGTGTCTGAAATGGG
764 TTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGC-CAGTAGC-CATTAAAGTGTCTGAAATGGG
*
11228425 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGC
826 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
11228490 ATGCCAACAAA
891 ATGCCAACAAA
* *
11228501 AATACAAGGATCACCTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
11228566 TGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
11228631 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
11228696 TATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCACATCTCGTCTCTCT
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *** *
11228761 GGCCGGCGTAGAGCCCGTATGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAG
261 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** ** * *
11228826 TTCATTCCTAGTCAAAGATTGGACCAGACCGAGGGTTGCGACAGCAAGATTGGCAGCACGCAGAG
326 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
***
11228891 GGGGACCCGGTAGATCCCCGGCTTGCGCATCTCC-CCCCTCTGGCCGGCTGAGCGCCCGCACGCT
391 GGGGACCCGACCGATCCCCGGCTTGCGCATC-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
11228955 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCC
455 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
** * *
11229020 AGTCTAAGATAGGATTGGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGC
520 AGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* ** * *
11229085 AGCATTTTTCTTCACCGGGG---CA-C--C--AGCATCGTCAGAGAACCTGACCGGCGGCATTGG
585 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GAGGCATTGG
* * ** *
11229142 GGTTCCGACGATCGGGGGG-CAGGGGGTGTGCGCACATGATGTGTTATGGGTGCTGGTACTTGAC
649 GGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
11229206 CCTTATATTGGCCCCCTAT--CTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGA
714 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
11229268 GATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATG
779 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATG
* * * *
11229332 GCCACAAAATCTTGTACACTTCAAGTTTCTAGCTGAATTTTTTTTTGCATGCCAACAAA
843 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
*
11229391 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* ** * *
11229456 TGAATTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
11229521 CGTGAAGGCTTAAGGGACCATTGTAGGAATTTACTAGCCATCAAAATGGCATTGGCATGCAGAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
11229586 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCT
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* ** ** *
11229651 GGCCGGCATAGTGCCCGTTCGGTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAG
261 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
** * * * * *
11229716 TTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAG
326 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
**** * * * * * *
11229781 GGGGACCCGGTAAATCCTC-GCTTGCGCATCTCGCCTCTCTGGCTGGTTGAGCGCCTGCACGCTC
391 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
11229845 ATTTCGTGGGTTGACTTAGGCATACGGAGTGCATTCCCAGTCTAA-CAT-C-G-G---------A
456 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
*
11229897 --C-----T---A---GACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCC
521 GTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** * ** * * * *
11229949 ATAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCTGAGAACCTAACTAGCGGCATTGGG
586 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC-CGAGGCATTGGG
* *
11230014 GTTCCGGTGATCGGGGGGTCCGGGAGGCGCGGTGTGCGCACATGATGTGCGATGGGTGTTGGTAC
650 GTTCCGGCGATCGGGGGG-CC--G-GG-G-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
11230079 TTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAAGAGCA
709 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
11230144 TTTGAGAATTTACAGGTTTACAAG-CAGTAGCCATTAAAGTGTTTGAAAT-GGGACACTTTTTTC
774 TTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
11230207 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGGTGCATGCCCACAAA
838 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
11230271 GATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATAC
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
** * * * * *
11230336 TAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATTGAAAACGAGTCATCCTGACATGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
11230401 CGTGGAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
11230466 TATGAAGATGTCCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCC
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * * * * * *
11230531 GATCGACGTAGT----GCCTGCCCGCCCGCCCGCTCATTTTGTCTGTTGGCTTAGGCATGCGGAG
261 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
11230592 TTCATTCCCAATCTACGATCAGACCAGACTGAGGGTTGTGGTAGTAGGATCGGCAACACGTAGAG
326 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
** * * *
11230657 GGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCAGCTGAGTGCCCGCACGCTC
391 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
11230722 GTTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-
456 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
11230770 G-----G--A-G--CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
521 GTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *
11230825 GCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
586 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GAGGCATTGGG
* * ** * *
11230890 GTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTACTTCATGGC
650 GTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
11230955 CCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGATCTCACACCCCCTTAAAGAGCATTTGG
714 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
11231020 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGG
779 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
11231085 TCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGACACCAAA
844 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
11231142 AATACAAGGGTCACGTCTACCAATTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCT
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* ** * * * *
11231207 CGAACTGCCAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAGTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
11231272 CGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGGCATAAAAATGGCATTGGCATGAAAAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * * * **** * *
11231337 TATAAAGATGTGCCTAAACCCATCTACCACCCAATCTATCCACGGCTTACGTAGAAATGGC-AT-
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA-TCCCGTCTCTC
* * * *
11231400 TGGCACGCAGAAATACGAAGATGTGCCTGCCCGCCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTT
260 TGGC-CG--G-----CG--TA-GTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* ** ** * *
11231465 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTATGGTAGCAGGATTGA
314 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGG
* ** ** * *
11231530 CAGCACGTAGAGGTCGACCCGACCGATCCCCGGCTTGATCATCCCGCCCTTCTGGTCGGCTGAGC
379 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
11231595 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAACCATACGA
444 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
11231660 AGTTCATTCCCAATCTAAGATTGGACTGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCA
509 AGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * ** *
11231725 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACGATCCCCGGAGCATCG-CAAGAGAACCTGAC
574 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGAC
* * * *
11231789 CAACGGCATTGGGGTTCGGGCGATCGGGAGGGCCCGGGGGGTGT-CGTACATGATGTACGATGGG
638 CGA-GGCATTGGGGTTCCGGCGATCGGG-GGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
11231853 TGCTGGTACTTGGTCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCT
700 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
11231918 TAAAGAGCATTTGAAATTTTACAGCTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
765 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
11231983 CTTTTTTCAATTGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGGGCATGC
830 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
11232048 CAACAAA
895 CAACAAA
* * *
11232055 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTCAAAAAATCC
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * ** *
11232120 TGAACCCTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * * *
11232185 CGTGAAGGCTTAAGGGACCATAGTATGAATTTAAAAGCCATAAAAGTGGCATTGGCATTCAAAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
11232250 TATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCATCTCTCT
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * ** * * * * *
11232315 AGTCGACGTAGTGCCTACCCGCCCGCTCGCCCGTTTGTTTCGTCGGTTTGCTCAGGCATACGGAG
261 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * *
11232380 TTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGAG
326 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
* * * * * * * *
11232445 GGTGACCCGACCGATCCCCGACTTACGCATCTCGCCCTTTTGGCCGACTGAGCACCCGCACGCTC
391 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * *
11232510 ATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAACCATATGTAGTTCATTCCCA
456 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * ** * * * *
11232575 GTCTAAGATCGGATCGGGTCGAGGGTTGC-GCAGCACATGCTTGGCTCGAGCATGTGTTGGTACC
521 GTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *
11232639 GCATTTTTCTTCGTCAGGGCACCATCGTTGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGG
586 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA-GGCATTGGG
* *
11232704 GTTCCGGTGATCGAGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
650 GTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
11232769 CCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
714 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
11232834 GATCTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGG
779 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
11232899 TCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
844 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * **
11232957 AATACATGGATCACGCCTACGAAGTTTGGGGCCGAAACTCCTTTTG-AAAAATTTTAAAAAATCC
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * * *
11233021 CGATCCGTAAAAAGTTTCAACAATCGTGAAATATAGAAAACGAGTCGTCTTGCCAAGAAAATTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
11233086 CGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCAGAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * *
11233151 TATGAAGATGTGCCTAAACCGACCAACCACCCTATCGATCCATGACTTGCGCATCCTGTCTCTCT
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
11233216 GGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAG
261 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * *
11233281 TTCATTCCTAATCTAAGATCAGACCAGACCGAAGGTTGCGGTAGCAAGATCGACAGCACGCAGAG
326 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
* * * * * * * * * *
11233346 GGGGACCCAACGGATCCTCGGCTTGCGTATCCCGTCTCTTTGGCCGGCTGAGCACCCGCACACTT
391 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
11233411 GTTTCATGGTTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACA
456 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
11233476 GTCTAAGATTGGACCGGACCGAGGTTTGCGGTAGCACATGCTGGGCTTGGGCATGTGTTGGTGCC
521 GTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* *
11233541 ACATTTTTCTTTGTCGGGGCACCATCG-CTGGAGCATCGTCGGAGAACCTTGACCG-GCGACATT
586 GCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACC-TGACCGAG-G-CATT
** * *
11233604 GGGGTTCCATCGATCGGGTGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
647 GGGGTTCCGGCGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
11233669 GGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
711 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
11233734 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAA
776 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* ** * * **
11233799 TGGTCACAAAATCGTGTATGCTTCAAGTTTATAGCTGAATTTTTTTGTGCACACCAA-AAA
841 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * * * *
11233859 AATACAAAGATCATGTCTACAAAGTTTGGGGCCAAGACTCCTTCCAAAAAAATTATAAAAAATCT
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
11233924 CGAATCGTAAAAAGTTTTAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
** *
11233989 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * *
11234054 TATGAAGATGTACCTAAACGCACCTACCACCCTCTCGATCCATGGCTTGCGCATCCCGTCTCTCT
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * * *
11234119 GGCCGGCATCGTGCCCGCCCGCCTGCCCGTCCACTCATATCATCGGTTGGCTTAGGCATACGGAG
261 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * ** * * *
11234184 TTCATTCCCAGTCTCAGATCAGACCCGATCGAGGGTTATGATAGTAGGATCGACAGCACGCAGAG
326 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
* ** * * * *
11234249 GGGGACTCGGTCGATCTCCGGCTTGCGCATCCCGCCCCTCT----GGC--A---CTCGCACCCTT
391 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
11234305 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTA
456 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * * *
11234370 GTCTAGGATCA-GACCAGACCGAGGGTTACGACAGCATATACTGGGCTCGGGCATGTGTTGGTGC
521 GTCTAAGAT-AGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* ** * * * *
11234434 CACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGACCGGCGGCATTGG
585 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GAGGCATTGG
* * * * * * *
11234499 GGTTCCAGCGATTGGGGGGGCCAGGGGGTTATACGCACATGATGTGTGATGGGTGCTAGTACTTG
649 GGTTCCGGCGA-TCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
11234564 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-TGCACACCCCCTTAAAGAGCATT
712 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT-CACACCCCCTTAAAGAGCATT
* * **
11234628 TGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGATGCTTTTTTCAAA
776 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
11234693 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAA
841 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAA
11234755 AATACAAGGATCA-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* *
11234819 CGAACCGCT-AAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
66 CGAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
11234883 ACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
130 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * *
11234948 ATATGAAGATATGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTTTCTC
195 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * ** * * * * * *
11235013 TGGCTGGTGTGGTGCCCGCTGGCTCACCCGCTCGCTCATTTCGTCGATTGGCTTAGGCAAACGGA
260 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * * ** *
11235078 GTTCATTCCCAATCTAAGATCAG-CCCGAGCCTAGGGTTGCGGAAGTAAGATTGACAAAACACAG
325 GTTCATTCCCAGTCTAAGATCAGACCAGA-CCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAG
* * * * * * *
11235142 AGGGGGACTCAACTGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTAAGCACCCGCACGC
389 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
11235207 TCATTTCGTGGGTTTACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
454 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
11235272 CAATCTAAGATTGGACAGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGT-CTTGGT
519 CAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC-TGGT
* * * * * *
11235336 GCCACATTTTTCTTCGCCGGGGCACCATCG-CAGGAGCATTGTCGAAGAACCTGATCGACAGCAT
583 GCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGA-GGCAT
* * * * *
11235400 TAGGGTTCAGGTGATCGGAGGGGCCGGGGGGTTATGCGCACATGATGTGTGATGGGTGCTGGTAC
646 TGGGGTTCCGGCGATCGG-GGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
11235465 TTGGCCCTCATATTGGCCCCTTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
709 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
11235530 TTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTTTTTTGA
774 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
11235593 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-AAATTTTTTTGTGCATGCCAACAAA
839 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
11235655 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGCTCCTTTCGAAAAAATTTTAAAAAATCC
1 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* *** *
11235720 CAAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
11235785 CGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
11235850 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCT
196 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * *
11235915 GGTCGGCATAGTGCCCGCCCGCCCGTCGGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAG
261 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** ** * * * *
11235980 TTCATTCACA-TCTAAGATCTCAGACTGGATTGAGGGTTACGGCAACAGGATCGGCAGCACCCAG
326 TTCATTCCCAGTCTAAGA--TCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAG
* * * ** * *
11236044 AGGGTGACCCGATCGATCCCCGGCTTGTGCATCCATCCCCTCTGGACGGCTGAGCGCCCGTACGC
389 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
11236109 TCGTCTCGTGGGTTGACTTAGGCATACGGAGTGCATTCCCAGTCTAAGCATACGGAGTTCATTCT
454 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
11236174 CAGTCTAAGAT
519 CAGTCTAAGAT
11236185 CACACCCCCT
Statistics
Matches: 11274, Mismatches: 1502, Indels: 619
0.84 0.11 0.05
Matches are distributed among these distances:
863 61 0.01
866 3 0.00
867 1 0.00
868 132 0.01
869 9 0.00
870 17 0.00
871 432 0.04
872 106 0.01
873 76 0.01
874 70 0.01
875 9 0.00
876 266 0.02
877 62 0.01
878 83 0.01
879 14 0.00
880 408 0.04
881 87 0.01
882 37 0.00
883 55 0.00
884 51 0.00
885 171 0.02
886 63 0.01
888 39 0.00
889 112 0.01
890 471 0.04
891 25 0.00
892 29 0.00
893 49 0.00
894 374 0.03
895 457 0.04
896 53 0.00
897 78 0.01
898 278 0.02
899 299 0.03
900 454 0.04
901 1182 0.10
902 1145 0.10
903 1791 0.16
904 565 0.05
905 67 0.01
906 22 0.00
907 128 0.01
908 71 0.01
909 39 0.00
910 8 0.00
911 4 0.00
912 285 0.03
913 318 0.03
914 304 0.03
915 16 0.00
916 41 0.00
917 4 0.00
918 12 0.00
919 4 0.00
920 50 0.00
921 179 0.02
922 64 0.01
923 44 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAGGCATTGGGG
TTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
Found at i:11226958 original size:4 final size:4
Alignment explanation
Indices: 11226949--11226990 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
11226939 CCAGCATAGT
11226949 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
11226991 TCTTTTCGTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.00, C:0.74, G:0.26, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:11227205 original size:25 final size:26
Alignment explanation
Indices: 11227168--11227220 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
11227158 TGGGTTGACT
11227168 TAGGCATACGGAGTTCA-TACCAGTC
1 TAGGCATACGGAGTTCATTACCAGTC
** *
11227193 TAGGCATGTGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTACCAGTC
11227219 TA
1 TA
11227221 AGATCAGATC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTACCAGTC
Found at i:11228126 original size:30 final size:27
Alignment explanation
Indices: 11228069--11228129 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 27
11228059 GTGTTGAACT
*
11228069 TAAGCATACAGAGTTCATTCCTTAGTC
1 TAAGCATACAGAGTTCATTCCTCAGTC
11228096 TAAGCCATACGAGAGATTCATTTCC-CAGTC
1 TAAG-CATAC-AGAG-TTCA-TTCCTCAGTC
11228126 TAAG
1 TAAG
11228130 ATCGGACGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 4 0.14
28 5 0.17
29 4 0.14
30 12 0.41
31 4 0.14
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (27 bp):
TAAGCATACAGAGTTCATTCCTCAGTC
Found at i:11229005 original size:26 final size:26
Alignment explanation
Indices: 11228975--11229027 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11228965 GTTGACTTAG
11228975 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11229001 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11229027 G
1 G
11229028 ATAGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11233460 original size:26 final size:26
Alignment explanation
Indices: 11233430--11233482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11233420 TTTGACTTAG
* *
11233430 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
11233456 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
11233482 G
1 G
11233483 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:11234360 original size:26 final size:26
Alignment explanation
Indices: 11234324--11234374 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11234314 GTTGACTTAG
11234324 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11234350 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
11234375 GGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11235268 original size:26 final size:26
Alignment explanation
Indices: 11235228--11235280 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11235218 GTTTACTTAG
*
11235228 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
* *
11235254 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
11235280 G
1 G
11235281 ATTGGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:11236159 original size:26 final size:26
Alignment explanation
Indices: 11236130--11236182 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11236120 GTTGACTTAG
11236130 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
* *
11236156 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
11236182 G
1 G
11236183 ATCACACCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:11236522 original size:26 final size:25
Alignment explanation
Indices: 11236482--11236533 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
11236472 GTTGACTTAG
11236482 GCATACGAGTGCATTCCCAGTCTAA
1 GCATACGAGTGCATTCCCAGTCTAA
* *
11236507 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATAC-GAGTGCATTCCCAGTCTAA
11236533 G
1 G
11236534 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGAGTGCATTCCCAGTCTAA
Found at i:11239820 original size:26 final size:26
Alignment explanation
Indices: 11239790--11239866 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
11239780 TGACTTAGGT
*
11239790 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
11239816 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
11239842 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
11239867 ATCGGACCGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:11240750 original size:26 final size:26
Alignment explanation
Indices: 11240714--11240766 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11240704 GTTGACTTAG
*
11240714 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11240740 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11240766 G
1 G
11240767 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11242723 original size:798 final size:800
Alignment explanation
Indices: 11241401--11246203 Score: 6304
Period size: 799 Copynumber: 6.1 Consensus size: 800
11241391 CAGCACGCAG
* * * ** * * *
11241401 AGGGGGACCCGACCGATCCCCGACTTACGCATCCATCCCCTCTGGTCGGCTGA-AACCC-CGAAT
1 AGGGGGACCTGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCAC--AC
* * * *
11241464 GCTCATTTCATGGGTTGACTTATGAATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
64 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* *** * *
11241529 CACAGTCAAAGATCAGATTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG-ATGTGCTGG
129 CACAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGG
* * * * * * *
11241593 TGCCACA-TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC-CGAAGAACCTGACCGGCGACA
194 TGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCACTCGGAGAACCTGATCAGAGGCA
*
11241656 TTGGGGTTCCGACGATCGGCGGGGCCGGTGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGG
259 TTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGG
* * *
11241721 TACTTGGCCTTTATATTGGCCCTCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGA
324 TACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
* * *
11241786 GCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTTTATGAAATGGGGACACTTTTT
388 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
11241851 TCAAATGGTCACAAAATCTTGTACACTTTGCATTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
453 TCAAAAGGTCACAAAATCTTGTACACTTCGCATTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
11241916 AAATACAAGGATCATGTCTACTAAGTTTGGGGCAAAAAATGCTTTCGAAAAAATTTTAAAAAATC
518 AAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAATGCTTCCGAAAAAATTTTAAAAAATC
*
11241981 TCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
583 TCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
11242046 ATGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
648 ATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
*
11242111 ATATGAAAATGTGCCTAAACCGACCGACCACCCATCGATCCACGGCTTACGCATCCCGTCTCTCT
713 ATATGAAGATGTGCCTAAACCGACCGACCACCCATCGATCCACGGCTTACGCAT-CCGTCTCTCT
*
11242176 GGCCGGCGTAGTGCCCGCCCGCCC
777 GGCCGACGTAGTGCCCGCCCGCCC
*
11242200 AGGGGGACCTGATCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACACGC
1 AGGGGGACCTGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACACGC
* * * * * *
11242265 TCATTTCATGAGTTAACTTAGGCATGCGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTC-
66 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCA
* *
11242329 CTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCACGGGCATTTGTTGGT
131 C-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGT
* * *
11242394 GCCACATTTTTCTTTGCCGGGGCACCATCGCCAGAGCATC-CTCGTAGAACCTGATCAGAGGCAT
195 GCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCACTCGGAGAACCTGATCAGAGGCAT
* * **
11242458 TGGGGTTCCGGCGATCGGGGGGGTC-GT-GGGGGTGTGCATACATGATGTGCGATAGGTGCTGGT
260 TGGGGTTCCGACGATCGGGGGGGCCGGTGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGT
11242521 ACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
325 ACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
11242586 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
390 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
11242651 AAAAGGTCACAAAATCTTGTACACTTCGTATTTTTAGTTGAATTTTTTTGTGCATGCCAATAAAA
455 AAAAGGTCACAAAATCTTGTACACTTCGCATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
*
11242716 ATACAAGGATCATGTCTACTAAGTTTGGGGCAAAAAATGCTTCCGAAAAAATTTTAAAAAATCTC
520 ATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAATGCTTCCGAAAAAATTTTAAAAAATCTC
** *
11242781 AAACCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCAT
585 AAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAT
*
11242846 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAAT
650 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * *
11242911 ATGAAGATGTGCCTAAACCGACCGAACACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTG
715 ATGAAGATGTGCCTAAACCGACCGACCACCC-ATCGATCCACGGCTTACGCAT-CCGTCTCTCTG
* *
11242976 GCCGGCGTAGTGCCCGCCCGTCC
778 GCCGACGTAGTGCCCGCCCGCCC
* * * *
11242999 AGGGGGACTTGATCGATCCTTGACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCACCCACACGC
1 AGGGGGACCTGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACACGC
* * * *
11243064 TCATTTCGTGAGTTGACTTAGGCATGCGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCC
66 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCA
* *
11243129 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCACGGGCATTTGTTGGTG
131 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTG
* * *
11243194 CCACATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATC-CTCAGAGAACCTGATCAGAGGCATT
196 CCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCACTCGGAGAACCTGATCAGAGGCATT
* * *
11243258 GGGGTTCCGGCGATCGGGGGGGTC-GT-GGGGGTGTGCGTACATGATGTGCGATAGGTGCTGGTA
261 GGGGTTCCGACGATCGGGGGGGCCGGTGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTA
11243321 CTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
326 CTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
11243386 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
391 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
11243451 AAAGGTCACAAAATCTTGTACACTTTG-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
456 AAAGGTCACAAAATCTTGTACACTTCGCA-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * *
11243515 ATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCC
520 ATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAATGCTTCCGAAAAAATTTTAAAAAATCTC
* *
11243580 GAACCGCAAAAAGTTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC-T--C--G---C--CA
585 AAACCGTAAAAAG-TTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
11243635 TG-GAA--CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGTGCAAAAA
649 TGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * *
11243697 TATGAAGATGTGCCTAAAATCGGACCG--GA--C--CGA---A-GG-TTACG-AT-AG----T-A
714 TATGAAGATGTGCCT-AAA-CCGACCGACCACCCATCGATCCACGGCTTACGCATCCGTCTCTCT
* * * **
11243744 GGATCAAC--A--GCACG-TAG---
777 GG-CCGACGTAGTGCCCGCCCGCCC
* * * * ** * ** * * *
11243761 AGGGGGACCCGACCGATCCCTGGCTTACACATCCATCCCTTCTGGCTTGCTGA-AAGCCCGCACA
1 AGGGGGACCTGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA-CCCACACG
* * *
11243825 CTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCGAAGCATACGGAGTTCATTC
65 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
11243890 ACAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
130 ACAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGT
* * * * *
11243955 GCCACATTTTT-TTTCGTCGGGGCACCATCGCCTGAGCATCACT-GGAGAACCTTACCGGCGGCA
195 GCCACATTTTTCTTT-GTCGGGGCACCATCGCCGGAGCATCACTCGGAGAACCTGATCAGAGGCA
* * * *
11244018 TTGGGGTTCTGACGAT-TGGGGGGCCGGTGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGG
259 TTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGG
*
11244082 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
324 TACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
* * * *
11244147 GCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCGTTAAAGTTTTTGAAATGGGGACACTTTTT
388 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * *
11244212 TCAAATGGTCACAAAATCCTGTACACTTCACGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAA
453 TCAAAAGGTCACAAAATCTTGTACACTTCGCATTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
11244277 AAATACAAGGACCATGTCTACTAAGTTTGGGGCAAAAAATGCTTCCGAAAAAATTTTAAAAAATG
518 AAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAATGCTTCCGAAAAAATTTTAAAAAAT-
* * *
11244342 CT---TCCG-----A-----AAAAATTTTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
582 CTCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
11244394 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
647 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * * * * *
11244459 AATATGAAGATGTGCCTAAACCGATCTACCACCGTATCGATCCACGGCTTGCACATCTCGTCTGT
712 AATATGAAGATGTGCCTAAACCGACCGACCACC-CATCGATCCACGGCTTACGCATC-CGTCTCT
* *
11244524 CTGACCGACATAGTGCCCGCCCGCCC
775 CTGGCCGACGTAGTGCCCGCCCGCCC
* * * *
11244550 AGGGGGAACTGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGTCAGCTGAGCACCCACACGC
1 AGGGGGACCTGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACACGC
* * *
11244615 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATACGGAGCTCATTCC
66 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCA
* * ** * * *
11244680 CAGTCTAAGATCGGACCAGATCGAGGGTCACGACAGCACATGCTGGGCTCGAGCATTTGTTGGTG
131 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTG
*** * * * * * *
11244745 TTGCAGTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGC-CGGA-AAACTGATTAGCGGCATT
196 CCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCACTCGGAGAACCTGATCAGAGGCATT
* * * * * *
11244808 GGGGTTCCGACGATCGGGCGGGTC---GGGGGGTGTGAGTATATGATGTGCGATAGGTGCTAGTA
261 GGGGTTCCGACGATCGGGGGGGCCGGTGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTA
* *
11244870 CTTGGCCCTTATATTGGCCACTATCCCTCATCAAACCTCAAGAACTGACACCCCCTTAAAGAGCA
326 CTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
*
11244935 TTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
391 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
11245000 AAAGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAA
456 AAAGGTCACAAAATCTTGTACACTTCGCA-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
11245064 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAATTTTTAAAAAATCCC
520 ATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAATGCTTCCGAAAAAATTTTAAAAAATCTC
* * * * *
11245129 AAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACAAGTCGTCTCGCCATGGAACTTCAC
585 AAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAT
*
11245194 GTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-GAAAA
650 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-AAA
* ** * * * * ** *
11245258 TATAAAGATGTGCCTAAGATTGGACCG--GACCGA-GGGT-TGCGG--TA-GCA--CG-----AT
714 TATGAAGATGTGCCTAA-A-CCGACCGACCACCCATCGATCCACGGCTTACGCATCCGTCTCTCT
* * *
11245309 ---CGAC--A--GCAC-ACAG---
777 GGCCGACGTAGTGCCCGCCCGCCC
* * * ** ** *
11245322 AGGGGGACCCGACCGATCCCCGACTTACGCATCCATCCCCTCTGGCCGGCT-AAAAGCCCATACG
1 AGGGGGACCTGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA-CCCACACG
* * * * *
11245386 CTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTC
65 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * *
11245451 ACAGTCTAAGATCGGATCGGACCTAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATATGCTGGT
130 ACAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGT
* * * * * *
11245516 CCCACTTTTTTCTTCGTCGGGGCACCATCACCGGAGCATC-TTCGGAGAACCTGA-CCGACGGCA
195 GCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCACTCGGAGAACCTGATCAGA-GGCA
*
11245579 TTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
259 TTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGG
11245644 TACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
324 TACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
** *
11245709 GCATTTGAGATTTTACAGGTTTGCTTTCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTT
388 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
11245774 TCAAATGGTCACAAAATCTTGTACACTACGCATTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
453 TCAAAAGGTCACAAAATCTTGTACACTTCGCATTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
11245839 AAATACAAGGATCATGTCTACCAAGTTTGGGGTAAAAAATGCTTCCGAAAAAATTTTAAACAATC
518 AAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAATGCTTCCGAAAAAATTTTAAAAAATC
* * *
11245904 TCAAACCGTAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTC
583 TCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
11245969 ATGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
648 ATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* *
11246034 ATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTACGCATCATGTCTCTC
713 ATATGAAGATGTGCCTAAACCGACCGACCACCC-ATCGATCCACGGCTTACGCATC-CGTCTCTC
* *
11246099 TGGCCGACGTAGTGCCCGGCCGCCT
776 TGGCCGACGTAGTGCCCGCCCGCCC
* *
11246124 AGGGGGACCTGATCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCACACGC
1 AGGGGGACCTGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACACGC
*
11246189 TCATTTCGTGAGTTG
66 TCATTTCGTGGGTTG
11246204 GTTGTTTCGT
Statistics
Matches: 3500, Mismatches: 383, Indels: 239
0.85 0.09 0.06
Matches are distributed among these distances:
751 29 0.01
752 1 0.00
754 1 0.00
756 1 0.00
757 1 0.00
759 1 0.00
761 15 0.00
762 238 0.07
763 56 0.02
764 290 0.08
765 2 0.00
766 4 0.00
768 1 0.00
769 5 0.00
770 3 0.00
771 2 0.00
772 199 0.06
773 36 0.01
774 4 0.00
775 8 0.00
776 59 0.02
777 363 0.10
778 5 0.00
779 3 0.00
780 7 0.00
781 4 0.00
782 6 0.00
783 5 0.00
784 1 0.00
785 223 0.06
786 51 0.01
787 75 0.02
788 31 0.01
789 214 0.06
790 8 0.00
791 3 0.00
792 3 0.00
794 7 0.00
795 3 0.00
796 3 0.00
797 122 0.03
798 387 0.11
799 830 0.24
800 55 0.02
801 69 0.02
802 64 0.02
803 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (800 bp):
AGGGGGACCTGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACACGC
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCA
CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTG
CCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCACTCGGAGAACCTGATCAGAGGCATT
GGGGTTCCGACGATCGGGGGGGCCGGTGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AAAGGTCACAAAATCTTGTACACTTCGCATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAATGCTTCCGAAAAAATTTTAAAAAATCTCA
AACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TGAAGATGTGCCTAAACCGACCGACCACCCATCGATCCACGGCTTACGCATCCGTCTCTCTGGCC
GACGTAGTGCCCGCCCGCCC
Found at i:11243121 original size:26 final size:26
Alignment explanation
Indices: 11243085--11243137 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11243075 GTTGACTTAG
*
11243085 GCATGCGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
11243111 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11243137 G
1 G
11243138 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11244329 original size:14 final size:14
Alignment explanation
Indices: 11244310--11244354 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
11244300 AGTTTGGGGC
11244310 AAAAAATGCTTCCG
1 AAAAAATGCTTCCG
*
11244324 AAAAAAT--TT--T
1 AAAAAATGCTTCCG
11244334 AAAAAATGCTTCCG
1 AAAAAATGCTTCCG
11244348 AAAAAAT
1 AAAAAAT
11244355 TTTAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
10 7 0.28
12 4 0.16
14 14 0.56
ACGTcount: A:0.53, C:0.13, G:0.09, T:0.24
Consensus pattern (14 bp):
AAAAAATGCTTCCG
Found at i:11244352 original size:25 final size:24
Alignment explanation
Indices: 11244310--11244364 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
11244300 AGTTTGGGGC
11244310 AAAAAATGCTTCCGAAAAAATTTT
1 AAAAAATGCTTCCGAAAAAATTTT
11244334 AAAAAATGCTTCCGAAAAAATTTT
1 AAAAAATGCTTCCGAAAAAATTTT
11244358 AAAAAAT
1 AAAAAAT
11244365 AGAAAACGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.55, C:0.11, G:0.07, T:0.27
Consensus pattern (24 bp):
AAAAAATGCTTCCGAAAAAATTTT
Found at i:11246416 original size:26 final size:26
Alignment explanation
Indices: 11246386--11246435 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11246376 TTGACTTAGG
11246386 CATACAGAGTTCATTCCCAGTCTAAT
1 CATACAGAGTTCATTCCCAGTCTAAT
*
11246412 CATACGGAGTTCATTCCCAGTCTA
1 CATACAGAGTTCATTCCCAGTCTA
11246436 TGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAT
Found at i:11248020 original size:26 final size:26
Alignment explanation
Indices: 11247984--11248036 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11247974 GTTGACTTAG
11247984 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11248010 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11248036 G
1 G
11248037 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11248907 original size:26 final size:26
Alignment explanation
Indices: 11248877--11248929 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11248867 GTTGACTTAG
* *
11248877 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11248903 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11248929 G
1 G
11248930 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11249305 original size:880 final size:879
Alignment explanation
Indices: 11247121--11250245 Score: 3629
Period size: 889 Copynumber: 3.5 Consensus size: 879
11247111 GTTGGCTTAT
* * ** * *
11247121 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCAGCAGCACATGTTGGG
1 GCATACGAAGTT-ATTCCCAGTCTAAGATTGGA-CCGA-CGAGGGTTGCAGCAGCACATGCTGGG
* ** * *
11247186 CTCAGGCATGTGCTGGAGCCATATTTTTC-TCTGCCGAGGCACCATCGCCGAAGCATCACTGGAG
63 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGGGCACCAT--------CA-C-C-GGAG
* * * *
11247250 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGTGGGTCGGGGGGTGTGCGCACATGATGTG
116 AACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGG-GGGCCAGGGGGTGTGCGCACATGATGTG
* * *
11247315 CGATGGGTGCCGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
180 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
11247380 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAATGTCTGAAAT
245 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11247445 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGACTTTTTTTG
310 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * *
11247510 TGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGTAAAAACTACTTCTGAAAGA
375 TGCATGCCAACAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * **
11247575 ATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
439 AGTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATA-AAAACGAGTCGTCTT
* *
11247640 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCA
503 GCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
11247705 TTGGCACATAGAAGTATGAAGATGTTCCTAAA-CCACCTA-CACCTTATTGATCCACGGCTTGCG
568 TTGGAACATAGAAATATGAAGATG-TCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
11247768 CATCCCATCTCTCTGGCCGGCGTAGTGAGTGCCCACCCTCCCGCCCGCTCGTTTCGTCAGTTGGC
632 CATCCCGTCTCTCTGGCC-GAGTAGT-AGTGCCCA----CCCACTCGCTCGTTTCGTCGGTTGGC
* *
11247833 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGGATCAGACTGAGGG-T-T-G--C-GG--T
691 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGATCGGACTGAGGGTTGTAGCACAGGATT
*** * * *
11247889 ---AGCATGTAGAGGGGGACCCGATCGATCCTCGGCTTTCGCATCCCGCCCCTCTGGCCGACTGA
756 GGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * **
11247951 ACGCCCGCAGGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
821 GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
11248010 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGAAG-TTATTCCCAGTCTAAGATTGGAC-CGA-CGAGGGTTGCAGCAGCACATGCTGGG
* * ** *
11248075 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGCACCATCGTCGGTGCATCACCGGAAAA
63 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GG-GGCA----C----CATCACCGGAGAA
* * * *
11248140 CCTGACCGACGGTATTGGGGTTCCGGCGATCGGGGGTGCCAGGGGGTTGTGCGCACATGATGTAC
118 CCTGACCGGCGGCATTGAGGTTCCGGCGATCGGGGG-GCCAGGGGG-TGTGCGCACATGATGTGC
*
11248205 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
181 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
11248270 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
246 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
11248335 GGGGCAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGCTGAATTTTTTTGT
311 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
11248399 GCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAA
376 GCATGCC-AACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
11248464 GTTTAAAAAATCTTGAACCTTAAAAAGTTTCAAAAATCATGAAAAATACAAAACGAGTCGTCTTG
440 GTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATA-AAAACGAGTCGTCTTG
11248529 CCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCAT
504 CCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
11248593 TGGAACATAAAAATATGAAGATGTCCGTAAACCCACCAACCACCCTATCGATCCACGGCTTGCAC
569 TGGAACATAGAAATATGAAGATGTCC-TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* **
11248658 ATCCCGTATCTCTAACCG-GT-GTAGTGCCCACCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCA
633 ATCCCGTCTCTCTGGCCGAGTAGTAGTGCCCACCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
11248721 TATGGAGTTCATTCCCAGTCTAAGATCAGGCT-GGATTGAGGGTTGTAGCACTAGGATTGGCAGC
698 TACGGAGTTCATTCCCAGTCTAAGATCAGGATCGGACTGAGGGTTGTAGCAC-AGGATTGGCAGC
* *
11248785 ACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
762 ACACAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
11248850 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
827 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
11248903 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTT-ATTCCCAGTCTAAGATTGGACC-GAC-GAGGGTTGCAGCAGCACATGCTGGG
*
11248968 CTCAGGTATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGGC
63 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGGC
* * * *
11249033 GGCATTGAGGTTCCGGCCATCGGGGGG-CAGGGGGTGTGCGCACATGATGTGTGATGTGTTCTGG
128 GGCATTGAGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
11249097 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
193 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
*
11249162 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTT
258 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * **
11249227 TCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCACACCAACAA
323 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * ** * * * * *
11249292 AATACAGGGATCACGTCTTCCAAGTTTCGGGGATAAAA-TTCTTTCAAAAAAATTTTTAAAAACT
388 AATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAAAAA-GTTTAAAAAAT
* * * *
11249356 CCCCGAA-CTGGCAAAAAGTTTTCCAAAAATTGTGAAAAATAGAAACGAGT-GTCTTGCCATGAA
451 -CTCGAACCT--TAAAAAG-TTT-CAAAAATCGTGAAAAATAAAAACGAGTCGTCTTGCCATGAA
* *
11249419 ACTTCACCGTGAATGCTTAAGGGGACCATTGTATGAATTTAACAAGCCCCAATAGAAATGGCATT
511 ACTTCACC-TGAAGGCTTAA-GGGACCATTGTATGAATTT-ACAAG--CC-ATAAAAATGGCATT
* *
11249484 GGCAACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGGCTTGCG
570 GG-AACATAGAAATATGAAGATGT-CCTAAACCCACCTACCACCCTATCGATCCAC-GGCTTGCG
* * * *
11249549 CATCCCGTCTCTCTGGCTGAACGTAGT-GCCTGCCCGCCCGCCCGTCCGCTCCTTTCGTCGGTTG
632 CATCCCGTCTCTCTGGCCG-A-GTAGTAG--TGCCC-ACC-CAC-T-CGCTCGTTTCGTCGGTTG
* * * *
11249613 GCTTAGGCATACGAAGTTCATTCCCAGCCTAAGATCA-GATCGGACCGAAGGTTACGGTAGCA-A
689 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGATCGGACTGAGGGTT---GTAGCACA
* * * * * * *
11249676 -GATCGGCAGCACCCAGAGGGGGACCCGGCCGATCCTCGACTTGTGCATCCCGCCCCTCTAGTCG
751 GGATTGGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCG
* ** *
11249740 GCTGAGCGCCCGCACGCTCATCTCATCAGTTGACTTAGGCATACGAAGTTCATTCCCAG--T--
816 GCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
11249800 G--T---AAG--A-T--C-G-----GATTGGA-C--CGAGGGTTGCAGCAGCACATGCTGGGCTC
1 GCATACGAAGTTATTCCCAGTCTAAGATTGGACCGACGAGGGTTGCAGCAGCACATGCTGGGCTC
* * * *
11249846 GGGCGTGTGCTGGT-CC-CATAATTTTCTTTGTCGGGGCGCCATCGCCAGAGCATCGTCAGAGAA
66 AGGCATGTGCTGGTGCCGCAT--TTTTCTTCGTCGGGGCACCAT---C--A-C--CG---GAGAA
* * * * * * * *
11249909 CCTGACCGGCGACATTAAGGTTCCGACGATCGGAGGTGCCGGGGGGGTGTGCGCTCATGATTTGT
118 CCTGACCGGCGGCATTGAGGTTCCGGCGATCGG-GGGGCC-AGGGGGTGTGCGCACATGATGTGC
** *
11249974 GATGGGTGCTCATACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
181 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
11250039 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
246 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
11250104 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTAAATTTTTTTGT
311 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
11250169 GCATGCCAACAAAAATAGAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
376 GCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
11250234 GTTTAAAAAATC
440 GTTTAAAAAATC
11250246 CCAAACCGCA
Statistics
Matches: 1955, Mismatches: 196, Indels: 171
0.84 0.08 0.07
Matches are distributed among these distances:
873 3 0.00
874 2 0.00
875 57 0.03
876 1 0.00
878 1 0.00
879 1 0.00
880 193 0.10
881 147 0.08
882 9 0.00
883 74 0.04
884 22 0.01
885 44 0.02
886 46 0.02
887 36 0.02
888 276 0.14
889 515 0.26
890 51 0.03
891 52 0.03
892 32 0.02
893 193 0.10
895 5 0.00
896 2 0.00
897 6 0.00
898 2 0.00
899 6 0.00
900 3 0.00
901 169 0.09
902 1 0.00
904 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (879 bp):
GCATACGAAGTTATTCCCAGTCTAAGATTGGACCGACGAGGGTTGCAGCAGCACATGCTGGGCTC
AGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGGCGGC
ATTGAGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAATCTCGA
ACCTTAAAAAGTTTCAAAAATCGTGAAAAATAAAAACGAGTCGTCTTGCCATGAAACTTCACCTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACATAGAAATATG
AAGATGTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
AGTAGTAGTGCCCACCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGGATCGGACTGAGGGTTGTAGCACAGGATTGGCAGCACACAGAGGGGGACCCGAC
CGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11250361 original size:26 final size:26
Alignment explanation
Indices: 11250325--11250375 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
11250315 GTTGACTTAG
11250325 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11250351 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
11250376 TGATCGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11251507 original size:26 final size:26
Alignment explanation
Indices: 11251478--11251530 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11251468 CTGGTCCGAT
11251478 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11251504 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11251530 C
1 C
11251531 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11253207 original size:894 final size:890
Alignment explanation
Indices: 11250768--11256837 Score: 7475
Period size: 894 Copynumber: 6.9 Consensus size: 890
11250758 GTCCGATCTG
* * *
11250768 ATCTTAGACGGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGCGGGCGGGCAGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCG
11250833 GGCGGGCACTACGTC-AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGCGGGCACTACGTCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
11250897 GGTTTAGGCACATCTTCATATTTCTATATGTGGCAATGCCATTTTTGTGGCTTGTAAATTCATAC
130 GGTTTAGGCACATCTTCATATTTCTACA--TGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
11250962 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
193 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
11251027 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAACGAGTTTTGGCCCCAAACT
258 TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
11251092 TGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA-AAAAAACATTTAGCTAAAAACTCAAAGT
323 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGT
* *
11251156 GTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
387 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
11251221 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGAGATG
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
11251286 GGGGGCCAATA-AAGGACCAAGTACCAGCACCCATCGCACTTCATGTGCACACA-CCCCCTGACC
517 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACC
* * * * *
11251349 CTCCCGATCGCTGGAACCGCAATGCTGTCGGTCAGGTTCTCCGGCGATGGTTCCCCGGTGAAGAA
582 C-CCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTGCCCCGGTGAAGAA
* * *
11251414 AAATGTGGCCCCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATC
646 AAATGCGGCACCAACACATGCCTGAG-CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATC
*
11251479 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
710 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * * *
11251544 CGGAACGAGCGTGCGGGTGCTTAGCCGGCCAAAGGGGTGGGATGAGCAAGCCGGGGATCGATTGA
775 CGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* ** ** *
11251609 GTCCCCCTCTGCATGCTATCGATCCGGCTACCACAACCCTCAGTCTGGTCTG
839 GTCCCCCTCTGCGTGCTATCGATCCTACTACTGCAACCCTCAGTCTGGTCTA
* * * * * * *
11251661 ATCCTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGCGAGCGGGTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCG
11251726 GGC-GGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
11251790 GTTTAGGCACATCTTCATATTTCTACGTGCCAGTGCCATTTGTATGGCTTGTTAAATTCATACAA
131 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG-TAAATTCATACAA
* *
11251855 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCG-TTTCTA-TTTACACGATTT
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * ** * **
11251918 TTG-AACTTGTTGCGGATC-AGAATTTTTAAAAGATTTTCGG-AGGATTTTTCACCCC-AACTTG
260 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
11251979 GTAGACGTGATCCTTCTATTTTT-TTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
11252043 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAACA
390 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * * *
11252108 AACCTGCAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTTGAGATTTGATGAGGGATAAGG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
11252173 GACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACAGCCCCCCCGACCCC
520 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGA-CCC
** * * * * * **
11252238 CCCGATCATCGGAGCCCCAATGCTGCCTG-TCAGTTTCTCCGGTGATGGTGCCCCGACGAAGAAA
583 CCCGATCGCCGGAACCCCAATGCCGTC-GATCAGGTTCTCCGGCGATGGTGCCCCGGTGAAGAAA
* * *
11252302 AATGGGGCACCAACACATGCCTGAGCACAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCT
647 AATGCGGCACCAACACATGCCTGAGC-CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCT
** *
11252367 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCAT
711 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * **
11252432 AAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGTAAGTCAAGGATCGGTCGGG
776 GAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
* ** * * * * *
11252497 TCACCCTCTATGTGCTACCGATCGTACTACTGCAACCCTCAGTTTGATCCA
840 TCCCCCTCTGCGTGCTATCGATCCTACTACTGCAACCCTCAGTCTGGTCTA
* *
11252548 ATCTTAGATTGGGAATGAACTCCGTATGCTTAAGCCAACCGACGAAATC-AGCGGGCGGGCAGGC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-CGAGCGGGCGGGCAGGC
** **
11252612 GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGTTGTGGATCGATAGGGTCATAGGTG
65 GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** **
11252677 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGATATTTTTATCACTTGTAAATTCATACAA
130 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
11252742 TGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
11252807 TTGAAACTTTTTGTGGTTCGAGATTTTTTACAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTG
260 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
11252872 GTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTGGAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
11252937 CAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCA
390 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
11253002 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
11253067 GGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACATCATGTGCGCACACCCACCCCGACCCC
520 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGACCCC
*
11253132 ACCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGGTGCCCCGGTGAAGAAAA
584 -CCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTGCCCCGGTGAAGAAAA
* * * *
11253197 ATACGGCACCAACACATGCTTGAGCCCAGCATGTGCTACCGCAACCCTCGGT-TCGGTCCAATCT
648 ATGCGGCACCAACACATGCCTGAG-CCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCT
*
11253261 TAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
711 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * * * *
11253326 GAAATGAGTGTGCGGCCGCTCAACCGACCAGACGGGCGGGATACGCAAGTCGGGGATCGGTTGAG
776 GAAACGAGCGTGCGGGCGCTCAGCCG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
* ** *
11253391 TCCCCCTCTGCGTGCTA-CTGATCCT-GTTGTAGCAACCCTCAATCTGGTCTA
840 TCCCCCTCTGCGTGCTATC-GATCCTACTACT-GCAACCCTCAGTCTGGTCTA
* * * * *
11253442 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGAGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCG
* * *
11253507 GGCGGGCACTACGTC-AGCCAAAGAGACAGGATGCGCAAGCCGTGGTTCGATAGGGTGGTAGGTG
66 GGCGGGCACTACGTCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
11253571 GGTTTAGGCACTTCTTCATATTTCTACATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
130 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
11253636 TGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTTATGATTT
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* *
11253701 TTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
260 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* ** * * *
11253766 GTAGACGTTATCCTTGTATTTTTGTTCACATGCACAGAAAAGTTCAGCTAAAAACTCGAAGTTTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
11253831 CAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTTAGACACTTTAATGGCTGCTGGCAGCA
390 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
11253896 AACATGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * * *
11253961 GGTCGATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCCCTCGACCCCT
520 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCC
* * * * *
11254026 TGATCACCGGAACCCCAATACAGCCGGTCAGGTTCTTCGGTGATGCTCTGGCGATGGTGCCCCGG
585 CGATCGCCGGAACCCCAAT---GCC-GTC--GATC--AGGT--T-CTCCGGCGATGGTGCCCCGG
* * * * * *
11254091 TGAAAAAAAATACGGCACCAGCACATG-CTCGAGCTCGGCATGTGCTGTCACAA-CC-C--TC--
639 TGAAGAAAAATGCGGCACCAACACATGCCT-GAGC-CAGCATGTGCTGCCGCAACCCTCGGTCTG
* *
11254149 G---G-TC-----C-----A-G---TCCG-AT-CTTAGACTGGGAATGAACTACGAATGCC-AAG
702 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
11254193 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATACGTAAGCCGAGGA
767 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * ** *
11254258 TTGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTA-TCGTAACCCTTGGTCCGGTCTA
831 TCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTACTACT-GCAACCCTCAGTCTGGTCTA
* * **
11254318 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCAGAAG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCG
** * * *
11254383 TACGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAGGTGT
66 GGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
11254448 GTTTAGGGACATCTACATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
11254513 GGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * * *
11254578 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGGGTTTT-GCCCCAAACTTGG
261 TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
11254642 TAGACGTGATCCTTGTATTTTTTTTGCCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
326 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
11254707 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
391 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
11254772 ACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATCGGGG
456 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * * * * *
11254837 GCCAATATAAGGGCCAAATGCTAGCAACCATCGCACATCATGTGCACACACCCCCCAG-CCCTCT
521 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCC-CC
* * * *
11254901 CTATCGTCGGAACCCCAATGTCGCCGATCAGGTTCT-C--CGA--------C---GAAGAAAAAT
585 CGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTGCCCCGGTGAAGAAAAAT
* * * * * **
11254952 GCGGCAGCAGCACATGCCCGAGCTAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGA
650 GCGGCACCAACACATGCCTGAGCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGA
* * * *
11255017 CTGAGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAA
715 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * * *
11255082 CGAGCATACGGGTGCTCAGCCGGCCAAAGAGGCGGGATGCACAAGTCAGGGATCGGTCGGGTCCC
780 CGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* * * * * *
11255147 CCTCTGCGTGCTGTCGATCCTACTGCTGTAACCTTCAGTCCGGTCCA
844 CCTCTGCGTGCTATCGATCCTACTACTGCAACCCTCAGTCTGGTCTA
* * *
11255194 ATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGC--G--GGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCG
* * * *
11255255 GGCGGGCATTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGG
66 GGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
11255320 CTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
11255385 GGTCCGTTAAGCCTTCACATGAAGTTTCATGGCCAGACGACTCATTTTCTATTTTTCACGATTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * *
11255450 TGAAACTTTTTGCGATTCGATATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGG
261 TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
11255515 TAGATGTGATCCTTGTATTTTTTTTGGCAT-CGACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
326 TAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* ** * *
11255579 CCAGATTTTGTGAAAATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATGGCTACTGGTAGCA
390 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
11255644 AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGCTCCCGAGGTTTGATGAGGGATAGCG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
11255709 GGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATGATGTGCGCACACCCCCCCGGCCCCC
520 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCC
** * * *
11255774 CAGATCGTTGGAACCCCAATCCCGCCGATCAGGTTCT---TCGA--------C---GAAGAAAAA
585 C-GATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTGCCCCGGTGAAGAAAAA
* ** * * * * * *
11255825 TGCGGCACCAACACAGGCCCAAGCCTAGCATGTACTGCCGTAACCCTTGGTCCGGTTCAATCTTA
649 TGCGGCACCAACACATGCCTGAGCC-AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTA
*
11255890 GACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
713 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* ** * * * *
11255955 AACGAGCGTGCAGTTGCTTAGCCAACCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCCGGGTC
778 AACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * *
11256020 CCCCTCTGTGTGCTATCGATCCTACTGCCGCAACTCTCAGTTTGGTCAA
842 CCCCTCTGCGTGCTATCGATCCTACTACTGCAACCCTCAGTCTGGTCTA
* * * *
11256069 ATCTTACATTGGGAATGAACTTCGTATACCTAAGCCAACCGACGAAACGA----GCGGGCA----
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCG
* * * * *
11256126 GGCGGACACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCTTTGATCGATAGAGTGGTAGGTGG
66 GGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
11256191 GTTTAGGCACATCTTCACATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
11256256 GGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* *
11256321 TGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTG
261 TGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
11256385 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTA
325 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
11256450 CAAGATTTTGTGACCATTTG-AAAAAGTGCCCCCATTACAGACACTTTAATGGCTACTGGCAGCA
390 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
11256514 AACCTGTAAAATCTGAAATGCTC-TTGA-GGGGTGTGAGTTCCTC-AAGTTTGGTGAGGGATAGG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-CTCGAGGTTTGATGAGGGATAGG
* * *
11256576 GGGCCAATATAAGGGCCAAGTTACCAGCACCCATGGGCACATCATGTGCGCAAACCCCCCTCCAG
519 GGGCCAATATAAGGGCCAAG-TACCAGCACCCAT-CGCACATCATGTGCGCACACCCCCC-CGA-
* * ** * * * *
11256641 CGCCCCTCGATCGCCGGAACCCTGCCGAT-CAAGGTTCTTTTCGATGATGCTCTGACGATGGTGC
580 C-CCCC-CGATCGCCGGAA-CC--CCAATGC--CG-TC-GATC-A-GGTTCTCCGGCGATGGTGC
* * * * * *
11256705 CCCGATGAAGAAAAATACGGCACCAACACATG-GTCGAGCCTAGCATGTGCTACCGTAACCCTTG
634 CCCGGTGAAGAAAAATGCGGCACCAACACATGCCT-GAGCC-AGCATGTGCTGCCGCAACCCTCG
* * * * * * *
11256769 ATATGATCTGATCTTAGACTAGG-ATGAACT-TGTAT-CTTAGACTGGGATTGAACTCCGTATG-
697 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
11256830 C-AAGTCAA
762 CTAAGTCAA
11256838 TGAAAAACGA
Statistics
Matches: 4494, Mismatches: 564, Indels: 241
0.85 0.11 0.05
Matches are distributed among these distances:
849 15 0.00
850 29 0.01
851 2 0.00
853 3 0.00
855 1 0.00
858 1 0.00
859 2 0.00
861 3 0.00
864 3 0.00
865 1 0.00
867 3 0.00
868 47 0.01
869 22 0.00
870 86 0.02
871 317 0.07
872 225 0.05
873 259 0.06
874 76 0.02
875 508 0.11
876 537 0.12
877 31 0.01
878 3 0.00
879 6 0.00
880 1 0.00
881 4 0.00
882 1 0.00
883 1 0.00
884 163 0.04
885 71 0.02
886 12 0.00
887 398 0.09
888 125 0.03
889 26 0.01
890 45 0.01
891 74 0.02
892 138 0.03
893 117 0.03
894 992 0.22
895 69 0.02
896 3 0.00
897 1 0.00
898 3 0.00
899 1 0.00
900 3 0.00
901 1 0.00
902 5 0.00
903 60 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (890 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCG
GGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCC
GATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGGTGCCCCGGTGAAGAAAAATG
CGGCACCAACACATGCCTGAGCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
TCTGCGTGCTATCGATCCTACTACTGCAACCCTCAGTCTGGTCTA
Found at i:11253295 original size:26 final size:26
Alignment explanation
Indices: 11253259--11253311 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11253249 TCGGTCCAAT
*
11253259 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
11253285 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
11253311 C
1 C
11253312 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:11255050 original size:26 final size:26
Alignment explanation
Indices: 11255011--11255063 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11255001 CCAGTCCGAT
11255011 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
*
11255037 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
11255063 C
1 C
11255064 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:11255922 original size:26 final size:26
Alignment explanation
Indices: 11255886--11255938 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11255876 CCGGTTCAAT
*
11255886 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11255912 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11255938 C
1 C
11255939 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11257566 original size:26 final size:26
Alignment explanation
Indices: 11257530--11257582 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11257520 CCGGTCCGAT
11257530 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11257556 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11257582 C
1 C
11257583 CTATGTCAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11259327 original size:26 final size:26
Alignment explanation
Indices: 11259298--11259350 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11259288 CCAATCCGAT
11259298 CTTAGACTGGGAAT-GAACTCCGTATG
1 CTTAGACTGGG-ATCGAACTCCGTATG
*
11259324 CTTAGACTGGGATCGAACTCTGTATG
1 CTTAGACTGGGATCGAACTCCGTATG
11259350 C
1 C
11259351 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGATCGAACTCCGTATG
Found at i:11260239 original size:26 final size:26
Alignment explanation
Indices: 11260200--11260252 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11260190 CTGGTCTGAT
*
11260200 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11260226 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11260252 C
1 C
11260253 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11261551 original size:885 final size:889
Alignment explanation
Indices: 11256902--11263649 Score: 8383
Period size: 885 Copynumber: 7.6 Consensus size: 889
11256892 ACTAGAAGAT
*
11256902 GGGATGCGC-AGCCGTGG-TCGATTGGGTGGTAGGTGGGTTTAGGCACAATCTTCATATTTCTGC
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC-ATCTTCATATTTCTGC
* * * *
11256965 ATGCTAAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAG-
65 ATGC-CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGT
** * ** * * *
11257029 TTCATGGCAAGATAACACGCTTTTCTATTTTTCACGATTTT-TGAACTTTTGGCTGTT-GGGATT
129 TTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGA-T
11257092 TTTTTAAAATTTTTTCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
192 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
11257156 TTCGCATGCACAAAAAAATGCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAA
257 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAA
* *
11257221 AAAGTGTCACCCA-TTCAGACAC-TTAAT-GCTAACTGGCAGCAAA-C-GCTATAATCTCAAATC
321 AAAGTGTC-CCCATTTCAGACACTTTAATGGCT-ACTGGCAGCAAACCTG-TAAAATCTCAAATG
*
11257281 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATTTGAGGGATAGAGGG-CAATATAATGGGCCA
383 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA--TGAGGGATAGGGGGCCAATATAA-GGGCCA
* * *
11257345 AGTACGCAGCACGCA--GCACATCATGTGCGCACACCCACTCCC-GCCCCTCCGATCGCCAGAAC
445 AGTAC-CAGCACCCATCGCACATCATGTGCGCACACCC-C-CCCGGCCCC-CCGATCTCCGGAA-
* *
11257407 CCCCAA-ACCGCCGGTCAGGTTCTCCGA-CGATATTCAGGTGACGGCGCCGCAGCGAAAAAAAAT
505 CCCCAATGCCGCCGGTCAGGTTCTCCGAGCG--A-T--GGTG-C--C-CCG-A-CGAAGAAAAAT
** * * * * * * *
11257470 ATGGC-CTCAACACATGCTCGAGCCCAGTATGTGCCGTCGCAACCTTCGGTCCGGTCCGATCTTA
559 GCGGCAC-CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTA
* * * * *
11257534 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTATGTCAAGCCATGA
623 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * ** *
11257599 AACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGTGATGCGTAAGTCGAGGG-TCGGTCAGGT
688 AACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCG-GGGATCGACCGGGT
* * * * **
11257663 CCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAA
752 CCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAA
* * * **
11257728 TGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACACC
817 TGAACTCCGTATGCCTAAGCCAACCGATGAAACGA----GCGGACGGGCGGGCGGGCACTACGTC
*
11257793 AGCCAGAGAGAC
878 GGCCAGAGAGAC
* * * **
11257805 GGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTGATATTTCTGTG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
*
11257870 TGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
* * **
11257935 CATGGCAAGACGACTCG-TTTCTCTTTTTCATGATTTTTGAAACTTTTTGCGGTTC-AGGATTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGA-GATTTT
** *
11257998 TTAAAATTTTTTCGGAAGGAGTTTCAGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTG
195 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
11258063 GCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
260 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* **
11258128 AGTCCCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTTCAATCTCAAATGCTCTTTA
325 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
** *
11258192 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCT
390 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* ** * *
11258257 CCAATCGCACATCATGTGCGCACA-CCCCTTGGCCCCCCGATCGCCGGAACACCAATGCCGCCGG
455 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCTCCGGAACCCCAATGCCGCCGG
* *
11258321 TCAGGTTCTCCGGCGATGCTCCGGGGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATG
520 TCAGGTTCT-C--CGA-G---C---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * *
11258386 CCCGAGCCAAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGA---T---CT-----T----T--
575 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
* *
11258434 G-A--C-T--A---GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGC
640 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * ** * * * * * **
11258490 TCAGCCGGTCAGAAGGGTGGGATGCATAATTTGGGGATTGGCTGGG-CCCCCTCTGCGTGCTGGT
705 TCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCC
* * ** * * * * *
11258554 GATCTTGTTGCTGCAACCCTCGGTCCGATTTGATCATAGACTGGGAATGAACTCCGTGTGCCTAA
770 GATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
11258619 GCCAGCCGATGAAAC---CAG-CGGGCGGGCGGGCACTACGTCGACCAGAGAGAC
835 GCCAACCGATGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
* * * *
11258670 GGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
11258735 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
* ** *
11258800 CATGTCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
* *
11258865 TAAAGTTTTCTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
196 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * **
11258930 GATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATAATTTGAAAAAAGT
261 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
11258995 GTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAA
326 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
11259060 GGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCATCAC
391 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
11259125 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCACTGCCGTCGAT
456 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCTCCGGAACCCCAATGCCG-C---
* ** * *
11259190 CAGGTTCTCTGGTGATGCTCCG-GCGATGGTGCCTTGGCGAAGAAAAATGTGGCACCAGCACATG
517 C-GG---TCAGGT--T-CTCCGAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* ***
11259254 CCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCAATCCGATCTTAGACTGGGAATGAACTCC
575 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
* * *
11259319 GTATGCTTAGACTGGG-ATCGAACTCTGTATGCCTAAGTCAACCCACGAAACGGGCGTACGGGCG
640 GTATGCTTAGACTGGGAAT-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * ** *
11259383 CTCAGTCGGCCAGAGGGGTGGGATGCGCAAGTCAGGGATCGATAGGGTCCCCCTCTGCGTGCTAC
704 CTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGC
* * * ** * *
11259448 CAATCTTGCTACTGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
769 CGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
11259513 AGCCTACCGATGAAACGAGCGGACGGACGGGCGGGCACTACGCCGACCTGAGAGAC
834 AGCCAACCGATGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
*
11259569 GGGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
11259634 TGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGACTTCACATGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
* * * *
11259699 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCACAATTTTTTGTGGTTAG-GAATTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAG-ATTTT
* * * *
11259763 TTAAAATTTTTTGGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCGTTGTATTTTTGTTG
195 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
11259828 GCAAGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAA
260 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAA
* *
11259893 GTGTCCCCATTTCAGAGACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAACTGCTCTTT
324 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
11259958 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
389 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
11260023 ACCCATCGCACATCAAGTGCGCACACCCCACCCCAGCCCCTCGATCGT-CGGAACCCCAATGCCG
454 ACCCATCGCACATCATGTGCGCACA-CCC-CCCCGGCCCCCCGATC-TCCGGAACCCCAATGCCG
** *
11260087 TTGGTCAGGTTCTCCGACAATGCTCCAGCGATGGTGCCCC-AGTGAAGAAAAATGCGGCACCAGC
516 CCGGTCAGGTTCT-C--C---G----AGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGC
* * * *
11260151 ACATGCCCGAGCCCAGCATGTGCTGCTGCAACCATCGGTCTGGTCTGATCTTAGACTGTGAATGA
570 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
* *
11260216 ACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACG
635 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * *
11260281 GGCGCTCAGTCGACCAGAGGGGCGAGATGTGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTG
700 GGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTG
* * * * *
11260346 CTACCGATCCTGCTACTGA-AACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
765 CTGCCGATCCTGCTGC-CACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* ** * *
11260410 GCCTAAGCCAACCGATGAAACGAGC-GA---GCGGGCAGGCACTACGTCGAACAAAGAGAA
829 GCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
* *
11260467 GGGATGCGCAGGCCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGCACATCTTCATATTTCTGCA
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* * **
11260532 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGGCCCCTTAAGCCTTCACGCGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
* *
11260597 CATGGCAAGACGACTCGTTTTCTATTTTTCGCGATTTTCAAAACTTTTTGCGGTTCGGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
* ** * * *
11260662 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTTTTACAAGTGATCCTTGTATTTTTTTTGG
196 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
11260727 CATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
261 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
11260792 ATCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAA
326 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
** *
11260857 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCGATATAAGGGCCAAGTACCAGCAC
391 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
11260922 CCATCGCACATCATGTGCGTACACCCCCCCGGCCCCCCCGATATCCAGAACCACAATGCCGCCGG
456 CCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCTCCGGAACCCCAATGCCGCCGG
* *
11260987 TCACGTTCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTA
520 TCAGGTTCTCCGAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
11261051 GCATGTGCAGCCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAG
585 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
11261116 TA-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGTCGGC
650 -ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
* * * * * * *
11261180 CAGAGGGGCAGGATGCGCAAGCCGGGGATCTACCGGGTCCCCCT-TACGTGTTGCCGATCTTGTT
714 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* ** * *
11261244 GCCACAACCCTCAGTCTGGTCCAATCTTAGAC-CGGAATGAACTTCGTATGCCTAAGCCAACCGA
779 GCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * **
11261308 CGAAACGAGCGGACGGGCGGGCGAGCAGTACGCCGGCTGGAGAGAC
844 TGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
* ***
11261354 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTATG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
*
11261419 TGCCAATGGCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
* *
11261483 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCCAAAACTTTTTG-GGTTCGAGATTCTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
* ** *
11261547 TAAAATTTTTTCAGAAGGAGTTTTGGCAACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
196 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
11261612 CCTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGT
261 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * *
11261677 GTCCCCATTTTAGACACTTGAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCACTTTAA
326 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
11261742 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCAC
391 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
11261807 CCATCGCACATCATGTGCGCACA------C--CCCCCCGATCGT-CGGAACCCCAATGTCGTCGG
456 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATC-TCCGGAACCCCAATGCCGCCGG
* * * *
11261863 TCAGGTTCTCC-AGCGATGGT-CCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGACTA
520 TCAGGTTCTCCGAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * **
11261926 GCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTATATGCTTAG
585 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
11261991 A-TCGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCTTGCGGGCGCTCAG-CTGG
650 ACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GG
* * * * * **
11262054 CCAGAGGGGCGGGATGCGTAAGAT-GGGGGTCGACTGGGTCCCCTTCTGCATGCTGTTGATCCTG
713 CCAGAGGGGCGGGATGCGCAAG-TCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* *
11262118 CTACC-CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
777 CTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
11262182 GATGAAACGAGCGGACGGACGGACGGGCGGGCGGGCGTTATGTCGGCCAGAGAGAC
842 GATGAAACGAGCGGAC-G--GG-CGGGCGGGC--AC--TACGTCGGCCAGAGAGAC
*
11262238 GGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
11262302 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
* ** * *
11262367 CATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTGGCGATTCGAGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
* * ** * *
11262432 TAAAATTTTTTCGGAAGAAGTTTCGGTACCAAGCTTGGTAGATGTGATCCTTGTATTTTTGTTGG
196 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
11262497 CATGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
261 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
11262562 GTCCCCATTTCGGACACTTTAATGGCTACTGGCCGCAAACCTGTAAAATCTCAAATGCTCTTTAA
326 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
** * *
11262627 GGGGGTGTGAGTTCTCAAAATTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTGCCAGCAC
391 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
11262692 CCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATCAT-C-GAACCCCAATGCCGTCG
456 CCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCGATC-TCCGGAACCCCAATGCCGCCG
* * *
11262754 GTCAGGTTCTACGGTGATGCTCTAGCGATGATGCCCCGACGAAGAAAAATGTGGCACCAGCACAT
519 GTCAGG-T-T-C-----T-C-CGAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * * * *
11262819 GCTCGAGCCC-TC--G-G-T-CCG--ATCCTCGGTCTGATCCGGTCTTGGACTGGGAATGAACTC
574 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
* * * *
11262876 CGTATG-TTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCATACAGGC
639 CGTATGCTT-AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * ** * * * *
11262940 GCTCA-ACTGGCCAGAGAGGCATGATGCACTAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCT
703 GCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCT
* * * *
11263004 GTCGATCCTGCTGCCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCC
767 GCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
11263069 TAAGCCGATCGACGAAACAAGCGAGCGGCCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGA
832 TAAGCCAACCGATG--A-AA-CGAGCGGAC----GGGCGGGCGGGCACTACGTCGGCCAGAGAGA
11263134 C
889 C
*
11263135 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCA
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
**
11263200 TGCCAATGCCATTTTTATGTTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
* * * *
11263265 CATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGAGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
* * * * *
11263330 T-AAACTTTTTCTGGAAGGAGTTTTGGTCCCAAACTTGGTAGATGTGATCCTCGTATTTTTGTTC
196 TAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
11263394 GCATGCACAAAAAAATTCAGCTAAAAACTCGAATTGTACAAGAGTTTGTGACCATTTGAAAAAAG
260 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
11263459 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGA
325 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *** *
11263524 AGGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGATAGGGGAAAAATATATGGGCCAAGTACCAGC
390 A-GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
11263589 ACCCATCGCACATCATGTGCG--CACCCGCCCGACCCCCCTGAT-TGCCGGAACCCCGATGCCG
454 ACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-GATCT-CCGGAACCCCAATGCCG
11263650 TCAGTCGACT
Statistics
Matches: 5140, Mismatches: 542, Indels: 330
0.85 0.09 0.05
Matches are distributed among these distances:
865 165 0.03
866 195 0.04
867 113 0.02
868 104 0.02
869 1 0.00
871 2 0.00
872 1 0.00
873 85 0.02
874 82 0.02
875 216 0.04
876 107 0.02
877 3 0.00
878 2 0.00
879 7 0.00
880 9 0.00
882 1 0.00
883 87 0.02
884 177 0.03
885 753 0.15
886 101 0.02
887 89 0.02
888 1 0.00
889 2 0.00
890 2 0.00
891 3 0.00
892 24 0.00
893 16 0.00
894 86 0.02
895 95 0.02
896 184 0.04
897 272 0.05
898 654 0.13
899 413 0.08
900 244 0.05
901 39 0.01
902 369 0.07
903 166 0.03
904 230 0.04
905 32 0.01
906 4 0.00
908 2 0.00
909 1 0.00
911 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCTCCGGAACCCCAATGCCGCCGGT
CAGGTTCTCCGAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCA
GAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
CACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
AAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
Found at i:11264405 original size:26 final size:26
Alignment explanation
Indices: 11264369--11264421 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11264359 CCGGTCTGAT
11264369 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
11264395 CTTAGACTAGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
11264421 C
1 C
11264422 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:11265399 original size:902 final size:902
Alignment explanation
Indices: 11263656--11267985 Score: 5602
Period size: 902 Copynumber: 4.8 Consensus size: 902
11263646 GCCGTCAGTC
* * *
11263656 GACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGACGGGCGGGCGGG
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGAGCGGGCGGG
* * ** *
11263721 CACTACGCCGACCAGAGAGATGGGATGCATAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
11263786 GCACATCTTCATATTTCTACGTGCCATTGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
11263851 TTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
** * * * *
11263916 TTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTTGACG
261 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACG
* * * *
11263981 TGATCCTTGTATATTTGTTGGCATGCACAAAACAATTCAGCTAAAAAGTCAAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
11264046 TTGTGACCATTCGAAAAAAATGTCCCCATTTCGGACACTTTAATCGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
11264111 AAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGAGGCCAA-
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * **
11264175 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCGATCAC
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATCGT
* * * *
11264240 CAGAACCACAATGCCGCTGGTCAGGTTCTCCGATGATGCTCC-AGCGATGGTGCCCCGATGAAGA
586 CGGAACCCCAATGCCGCT-GTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGA
** * * * *
11264304 AAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTGCAACACTCGATCCGGTCTGAT
649 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGAT
* * * * *
11264369 CTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCAACCC
714 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
11264434 ACGAAACGAGCATGCGGGCACTCAGTCGCCCAGAGGGGCGGGATA-CGCAAGCCGGGGATCGACC
779 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA-AGCGCAAGCCGGGGATCGACC
* * * * * * *
11264498 GGGTTCCCCTCTACGTGTTGTCGATCCTGCTACCGTAACTCTCAGTTC-GGTCTGATCTTA
843 AGG-TCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAGGTCGGGTCCGATCTTA
* *
11264558 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGAGCGGACGAGCAGGCGGG
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGAGCGGGCGGG
* * * * *
11264623 CACTACGTCGGCTAGAGAGACGGGATGTGCAAGCCGTGGATCGATTGGGTTGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
11264688 GTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
11264753 CTAAGCCTTCACGTGAAGTTTCATGGTAAGACGAGTC-TTTTGCTATTTTTCACGATTTTCAAAA
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT-CTATTTTTCACGATTTTCGAAA
** * * * *
11264817 CTTTTTGCGGTTCAAGATTTTTTAAAATTTGTTT-TGAAGGTGTTTTGTCCCCAAACTTGGTAGA
260 CTTTTTGCGGTTCGGGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGA
* *
11264881 CGTGATCCTTCTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
11264946 TTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTATTGGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
11265011 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGTGGTTCGATCAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
11265076 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATC
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATC
* *
11265141 GTCGGAACCCGAATGCCGCCTGTCAGGTTCTCCGACGATGCTCCGACGTTGGTGCCCCGACGAAG
584 GTCGGAACCCCAATGCCG-CTGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * *
11265206 AAAAATGTGGTACCAGCACATGCCCCAGCCCAGCATGTGCT-CCACAACCCTCGATCTGGTCTGA
648 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGA
* * * *
11265270 TCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTCTGTCTAAGTCAACC
713 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
11265335 CATGAAACGAGCGTACAGACGCTCAGCCGGCCAGAGGGGCGGGAAGCACAAGCCGGGGATCGACC
778 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAAGCGCAAGCCGGGGATCGACC
* * * * * *
11265400 AGGTCCCCCTCTGCATGCTGCCAATCCTGTTGCCGTAACACC-C-GGTCTGATCCGATCTTA
843 AGGT-CCCCTCTGCGTGCTGCCGATCCTGCTACCGTAAC-CCTCAGGTCGGGTCCGATCTTA
* * *
11265460 GATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGA---A-C-G--G-GCGGGCGGG
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGAGCGGGCGGG
* * *
11265517 CACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGAGGATGGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
11265582 GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
11265647 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
* * * * *
11265712 TATTTGCGGTTCGAGATTTTTAAAAAATTTTTT--GAAGGCA-TTTTAGCCCTAAACTTAGTAGA
261 TTTTTGCGGTTCGGGATTTTT-TAAAATTTTTTCGGAAGG-AGTTTTGGCCCTAAACTTGGTAGA
* ** *
11265774 CGTGACCCTTGTATTTTTGTTGGTGTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
11265839 CTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
11265904 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGCTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* **
11265969 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCTGGCCCCCCCGATC
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATC
* * **
11266034 GTTGGAACCCTAATGCCGCTAGTCAGGTTCTCCGGGGATGCTACGGCGATGCCACGGTGATGGTG
584 GTCGGAACCCCAATGCCGCT-GTCAGGTTCTCCGACGATGCT-C--C---G--AC---GATGGTG
* * * * * * *
11266099 CCTCGACGAAGAAAAATGCGACACCAGCACATACCTGCGCCCAGCATGTGCTGCTGCAACCCTC-
637 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
* * * * * *
11266163 AGTCCAGT-TCAATCTTAGACTGGAAATGAACTCTGTATGCCTAGACTGGGAATGAACTCCATAT
702 A-TCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* ** * * * * *
11266227 GCCTATGTCAACCCAAAAAATGAGCGTGTGGGCGCTCAGCCAGCCAAAGGGGCGGGATGCGCAAG
765 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAAGCGCAAG
** * * ** * * * * *
11266292 CCGGGGATCGGTCGGGTCCCTCTCTGCTTGCTGTTGATCCTACTATCGAAACCCT-TGGTCCGGT
830 CCGGGGATCGACCAGGTCCC-CTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAGGTCGGGT
*
11266356 CTGATCTTA
894 CCGATCTTA
* *
11266365 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGC-GAGCGAGCGGGCGG
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGA-CGAGCGGGCGG
* * * * ** *
11266429 GCACTACGCCGACCAGAGAGAC-CGATGCACAAGCCATGGATCGATAGGGTCATTGGTGGGTTTA
65 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
11266493 GGCGCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
130 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
11266558 C-TAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGA-TTTCGAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
** * * *
11266621 CTTTTTGCAATTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGACCCTAAACTTGGTAGGC
260 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGAC
*
11266686 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* **
11266751 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACAAGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
11266816 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
11266881 TATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GCCCCCCCGATC
* * * *
11266946 GTCGGAACCCCAGTGCCGTCGGTTAGGTTCTCCGGCGATGCT-C--C---GGT--------GAAG
584 GTCGGAACCCCAATGCCG-CTGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * **
11266997 AAAAATACGGCACCAGCACCTGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCAA
648 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGA
* *
11267062 T-TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
713 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
11267126 CACGAAACGAGCGTGC-GG-G--CA----GACA-A-------GATGCGCAAGTCGAGAATCGGCC
778 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAAGCGCAAGCCGGGGATCGACC
* * *
11267175 AGGTCCTCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT-TGGTCGGGTCCGATCTTA
843 AGGTCC-CCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAGGTCGGGTCCGATCTTA
* * * * *
11267235 GACTGGAAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGC--G-GG-CGGGCGGGCAGG
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGAGCGGGCGGG
** * * * *
11267296 CACTACTTCGGCCAGAGAGATGGGATACGCAAGCTGTGGATCAATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
11267361 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
11267426 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGGTTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
*
11267491 TTTTTGCGGTTCGGCATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACG
261 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACG
* * * * * *
11267556 TGATCCTTGTATTTTTTTTGGCATGCATAAAAACATTCACCTAAAAACTCAAACTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
11267621 TTGTGACCATTTGAGAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
11267686 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
11267751 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCTCCCCGACCCCCCCGATC
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCG-CCCCCCCGATC
* * * ** *
11267816 GCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCAACGAAG
584 GTCGGAACCCCAATGCCG-CTGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* ** * *
11267881 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCATAACCCTCTG-TCTGGTCCG
648 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC-GATCCGGTCTG
* *
11267945 ATCTTAGACTGAGAATGAACTCCGCATGCTTAGACTGGGAA
712 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
11267986 AGGACAATTT
Statistics
Matches: 3008, Mismatches: 352, Indels: 153
0.86 0.10 0.04
Matches are distributed among these distances:
866 27 0.01
867 96 0.03
868 53 0.02
869 294 0.10
870 161 0.05
871 2 0.00
876 3 0.00
877 1 0.00
878 3 0.00
882 2 0.00
884 63 0.02
885 38 0.01
886 70 0.02
887 56 0.02
892 2 0.00
893 300 0.10
894 205 0.07
895 15 0.00
896 1 0.00
897 1 0.00
898 1 0.00
899 2 0.00
901 12 0.00
902 665 0.22
903 153 0.05
904 60 0.02
905 202 0.07
908 1 0.00
909 12 0.00
910 26 0.01
911 307 0.10
912 144 0.05
913 30 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGAGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATCGT
CGGAACCCCAATGCCGCTGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAAGCGCAAGCCGGGGATCGACCAGG
TCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAGGTCGGGTCCGATCTTA
Found at i:11266216 original size:26 final size:26
Alignment explanation
Indices: 11266178--11266231 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
11266168 AGTTCAATCT
**
11266178 TAGACTGGAAATGAACTCTGTATGCC
1 TAGACTGGAAATGAACTCCATATGCC
*
11266204 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGAAATGAACTCCATATGCC
11266230 TA
1 TA
11266232 TGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCATATGCC
Found at i:11267099 original size:26 final size:26
Alignment explanation
Indices: 11267063--11267114 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
11267053 CCGGTCCAAT
11267063 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
11267089 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
11267115 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:11271193 original size:26 final size:26
Alignment explanation
Indices: 11271154--11271206 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11271144 CCAGTCCGAT
* *
11271154 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
11271180 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
11271206 C
1 C
11271207 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:11272829 original size:898 final size:896
Alignment explanation
Indices: 11270277--11281064 Score: 9817
Period size: 898 Copynumber: 11.9 Consensus size: 896
11270267 CCGATCCGAT
* *
11270277 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * *
11270342 CGGCCAGAGGGGCGGGATGA-GCAAGCCGGGGATCGACCGGGTCTCCCTCTACGTGCTACTGATC
66 CGGCCAGAGGGGCGGGAT-ACGCAAGCCAGGGATCGACCGGGTC-CCCTCTGCGTGCTACCGATC
* ** * * *
11270406 CTGCTACCGTAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATAAACTCTGTATGCCTAGGCCA
129 CTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
11270471 ACCGACGAAACGAGCCGGTGGATGGGCGGGCGGGCACTACGTCGGCCAGATAGACGGGATGCGCA
194 ACCGACGAAACGAG-C-G-GG-CGGGCGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
11270536 AGCCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
254 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCC
* *
11270601 ATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGA
319 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
11270666 CGAGTCGTTGTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTT
384 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTT
* * **
11270730 TTCGGAAGGATTTTTGGTTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
448 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
11270795 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
11270860 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTG
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
11270925 AGTCCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGTCAAGTACCAGCACCCATCGCAC
643 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
11270990 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGAAACCGCAATGCC-TCCGATCAGGTTC
708 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGT-CGGTCAGGTTC
* * ***
11271053 TCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTTGCACCAGCACATGCCCGAGCC
772 TCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * *
11271118 CAGCATGTGCTG-TCGTAACCCTCGGTC-CAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
837 CAGCATGTGCTGCT-GCAACCCTCGGTCTGA-TCTGATCTTAGACTGGGAATGAAC-TC-TATG
* * * * *
11271180 CTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * *
11271245 CGGCCATAGGGGCGGGATACGTAAGTC-GAGGATCGACCGGATCCCCT-TCGACGTGCTATCGAT
66 CGGCCAGAGGGGCGGGATACGCAAGCCAG-GGATCGACCGGGTCCCCTCT-G-CGTGCTACCGAT
* * *
11271308 CCTGCTGCCCCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
128 CCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
11271373 AACCGATGAAACCAGCGGACGGGC---GGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCG
193 AACCGACGAAACGAGCGGGCGGGCGGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * **
11271435 GTGGATCGATAGGGTGGTAGGTGGATTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCATTT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
11271500 TTATGGCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** *
11271565 TCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTCCGGTTCCGA-ATTTTTTAAAATTTTTTCA
388 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTT-CGAGATTTTTTAAAATTTTTTCA
* * * *
11271628 AAAGGAGTTTTGGGCCCAAACTT-G--GACGTGATCCTTGTATTTTTGTTGCCATGCATAAAAAA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
11271690 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCAATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
** *
11271755 ACACTTTAATGGCTACTGGCAATAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * **
11271820 GTCAAGGTTTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
11271885 TGTGCGCACA-CCCCCCGGGCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGG
712 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* *
11271949 TGATGCTCC-AGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGC
777 TGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
*
11272013 ATGTGCTGCTGGAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCTCATG
841 ATGTGCTGCTGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAAC-TCT-ATG
** * *
11272071 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * *** * * *
11272136 TGGCCAGAAGGGCAGGTTACGCAAGCCATGGATCGGTTGGGTCCCCTCTGCGTGCTGCCAATCTT
66 CGGCCAGAGGGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCTCTGCGTGCTACCGATCCT
* * * * *
11272201 GCTACTGCAACCCTCAAT-TCGATCCAATCTTAGACTGGGAATGACCTCCGTATGCCTAAGCCAA
131 GCTACCGCAACCCTCAGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
11272265 CCGACGAAACGAGCGGGCGGGCGGGGAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
195 CCGACGAAACGAGCGGGCGGGCGGGG-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
11272330 TGGATCGGTAGGGTGGTAGGTGTGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTT
11272395 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
11272460 TGTTTTCTATTTTTCACGATTTTCAAAACTTTATGCGATTCGAGATTTTTTAAATTTTTTTCAGA
389 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGA
* * * *
11272525 GGGAGTTTTAGCCCCATACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
11272590 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
11272655 ACTTTAATGGCTACTGACAGCAAACTTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * *
11272720 GGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACTAGCACTCATCTCACATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
11272785 TGCGCACGCCCCCCCGACCCCTCCGATCATCG-GACCCCAATGCCGTCTGTCAGGTTCTCCGATG
714 TGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATG
* * * * * * *
11272849 ATCCTCCGGCGATGGTTCCCCGGCGAAGAAAAATGCGGCCCCAGCACATGCTCGAGCCCAGCATG
779 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
**
11272914 TGCTGCCACAACCCTCGG--T-A-C-G------G--T--G--TG------AT-
844 TGCTGCTGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTATG
* * *
11272943 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTA-GTAAACGAGCATGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCATGCGGGCGCTCAG
* ** * * * * *
11273007 CCGGCCAGAGGGGTGGGATGTGAAAGCCAGGGATCGATCGGGTCCCCTTCTGTGTGCTGCTGATC
65 CCGGCCAGAGGGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCC-TCTGCGTGCTACCGATC
* *
11273072 CTGCTACTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
11273137 ACCGACGAAACGAACGGGCGGGTGAGAGGGCGGGCACTATGCCAGCCAGAGAGACAGAATGCGCA
194 ACCGACGAAACGAGCGGGC--G-G-GCGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
11273202 AGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCC
254 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCC
* * * *
11273267 ATTTTTATGGCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCACGTGAAGATTCATGGAAAGA
319 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
11273332 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
384 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
11273397 TCAGATGGAGTTTT-GCCCCAAACTTTGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAA
449 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
11273461 ACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTT
514 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
11273526 AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * **
11273591 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCTTACA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
11273656 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTTAGGTTCTC
709 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTC
* * * *
11273721 CGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACTGCACCAGCACATTCCCGAGCCCA
774 CGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * * *
11273786 GAATGTGCTGCTGCAACCCTCGGTTTGGTCTGATCTTAGATTGGGAATGAACTCTGTATG
839 GCATGTGCTGCTGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTC--TATG
* * * ** * * *
11273846 CTTAGATTGGCAATGAACTCCGTATACCTAAGTCAACCCACG-AA-GAAAAATGTGGCACCAGCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-AGCATGCGG--GC-GCT
* * * * * ** * *
11273909 AATGCTCGAGCCCAGCATGTGCTGCCGCA-ACCCTTGGTCC-GGTCTGATCTTAGACTGGGAATG
62 CA-GC-CG-G-CCAG-A-G-G-GGCGGGATACGC-AAG-CCAGG---GATC---GACCGGG--TC
** ** * * * * * **** *
11273972 AACTCTGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGTGCTCAGTC-GGCCAGAGGGGCG
109 CCCTCTGCGTG-CT-A-CCGATCC-TG--CT-A-C-CGC-AACCCTCAGTCTGGTC-------C-
** * * * * * * *
11274036 GGATGCACAAGGCGGGGATCGATCGAGTCCCCCTCTACGTG-CT-A-CCGATCCTGCTGCGACAA
156 -GAT-C-TTAGACTGGGA---AT-GA--ACTCC-GTA--TGCCTAAGCC-AACC-G--ACGA-AA
* * ** ** * * * *
11274098 CCCTCAGTCCGGTCTGATCTTAGAATGGG-AATGAACTCCGTATGCCTA-AGCCA-ACCGACGAA
204 --C-GAG--CGGGC-GGGC---G-GGGGGCACT--ACGCCG---GCC-AGAG--AGA-CG-GGAT
* * ** * *** * *
11274160 ACG-AACGGGCG-GG-T-GGGAGGGTGGGCACTACGCCGACCAGAGAG-ACGGGATGCGCAAGCC
249 GCGCAA--GCCGTGGATCGATAGGGT-GG---TA-G--G---TG-G-GTTTAGG-T--AC-A-TC
* ** ** * ** *
11274220 GTGGATCGATAGGGTGGTTGGTGGGTTTAGGTACAT-CTTCATATTTT-T-GCATGCCAATGCCA
295 -T---TC-ATA---T--TT-CT--GCAT-GCCA-ATGC--CAT-TTTTATGGCTTGTAAAT-TCA
*** * * * * *
11274282 TTTTTATGG--CCTGTAAATTCATACAATGGTC-CCTTAAGCCTTCACGTG-AAGTTTCATGGCA
341 -TACAATGGTCCCT-T-AA-GC---C--T--TCACGTGAAG-TTTCATG-GCAA-----------
* * * *
11274343 AGACGACCCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCAAGATTTTTTAAAATT
382 -GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * * *
11274408 TTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCTC
446 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
11274473 AAAAAAAATTCTGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCC
511 -AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
11274538 ATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
575 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
11274603 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCT
640 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
11274668 TACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTTAGGT
705 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGT
* * * *
11274733 TCTCCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATTCCCAAG
770 TCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * * *
11274798 CCCAGAATGTGCTGCTGCAACCCTCGGTTTGGTCTGATCTTAGATTGGGAATGAACTCTGTATG
835 CCCAGCATGTGCTGCTGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTC--TATG
* * * ** * * *
11274862 CTTAGATTGGCAATGAACTCCGTATACCTAAGTCAACCCACG-AA-GAAAAATGTGGCACCAGCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-AGCATGCGG--GC-GCT
* * * * * ** * *
11274925 AATGCTCGAGCCCAGCATGTGCTGCCGCA-ACCCTTGGTCC-GGTCTGATCTTAGACTGGGAATG
62 CA-GC-CG-G-CCAG-A-G-G-GGCGGGATACGC-AAG-CCAGG---GATC---GACCGGG--TC
** ** * * * * * **** *
11274988 AACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGTC-GGCCAGAGGGGCG
109 CCCTCTGCGTG-CT-A-CCGATCC-TG--CT-A-C-CGC-AACCCTCAGTCTGGTC-------C-
** * * * * * * **
11275052 GGATGCACAAGGCGGGGATCGATCGAGTCCCCCTCTACGTG-CT-A-CCGATCCTG-CTGCCAC-
156 -GAT-C-TTAGACTGGGA---AT-GA--ACTCC-GTA--TGCCTAAGCC-AACC-GAC-GAAACG
* *** ** **** ** ** ** * * *
11275112 AACCCTCAGTCCGATCTG-ATCTTA-GAATGGGAATGA-ACTCCGTATGC-CTAAGCCAACCGAC
206 AGCGGGC-GGGCGGGGGGCA-C-TACG-CCGGCCA-GAGAGACGGGATGCGC-AAG----CCG-T
* * * * ** * ** * *** * *
11275173 GAAACGA-ACGGGCGGGT-GAGAGGG--CGGGCACTATGCCAGCCAGAGAGACAGAATGCGCAA-
260 GGATCGATA-GGG-TGGTAG-GTGGGTTTAGGTAC-AT--C-TTCATA-TTTCTGCATGC-CAAT
* * * *
11275233 GCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTTTGC-ATGCCAATGCC
316 GCC----AT---T----T--TT-AT-GGCTT--GTA-A-ATTCATA------CAATG---GT-CC
* * * * *
11275297 ATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AAGTTTCATGGCAAG
352 ---CTTA-AGCC------TTC--AC----G----TGAAG-TTTCATG-GCAAG----A---C---
* * * * *
11275361 ATGACTCGTTTTTTATTTTTCACAATTTT-AAAAATTTTTGCAGTTCGAGATTTTTTAAAATTTT
385 --GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
11275425 TTCGGAAGGCA-TTCTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
448 TTCAGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
11275489 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCAT
512 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
11275554 TTCATACACTTTAATGGCTACTTGCAGCAAACATGTAAAATCTCAAATGCTTTTTAA-GGGGTGT
577 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
11275618 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGAACCAGCACCCATCGCA
642 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
11275683 CATCATGTGCGCACACCCCGCCCGGCCCCCCCGTTC-ACTGGAACCCCAATGCCG-CTGATCAGG
707 CATCATGTGCGCACACCCC-CCCGGCCCCCCCGATCGTC-GAAACCCCAATGCCGTC-GGTCAGG
* * * * * ** * *
11275746 TTCTCCGTTGATGCTCCGACAATTGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACCTGCCTGA
769 TTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
* * * * *
11275811 GCCCAACATGTGCTACTGCAACCCTCGATCTAATGC-GATCTTAGATTGGGAATGAACTCCATAT
834 GCCCAGCATGTGCTGCTGCAACCCTCGGTCTGAT-CTGATCTTAGACTGGGAATGAACT-C-TAT
11275875 G
896 G
* * *
11275876 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-TAGAACGAGCGTACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCATGCGGGCGCTCAG
* * * ** ** * * **
11275940 CC-ACCAGAAGGGCTGGATGTGCAAGCC-GAGGATCGGTCTGGTCACCCTCTACGTGCTGTCGAT
65 CCGGCCAGAGGGGCGGGATACGCAAGCCAG-GGATCGACCGGGTC-CCCTCTGCGTGCTACCGAT
* * * * ** * *
11276003 CCTTCTGCCGTAACCCT-TGATCCAGTCTGATCTTAGACTGGGAATGAACT-CATATGCCTAAGC
128 CCTGCTACCGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
11276066 CAACCAACAAAACGAG-GGGACGGGCGGGCGGGCACTACGTCAGG-CAGAGAGACGGGATGCGCA
192 CAACCGACGAAACGAGCGGG-CGGGCGGG-GGGCACTACG-CCGGCCAGAGAGACGGGATGCGCA
** * * * * **
11276129 AGCTATGGATCGAAAGGGTGGCAAGTGGGTTTAGGTACATCCTCATATTT-TTTAGTGCCAATGC
254 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCA-TGCCAATGC
* *
11276193 CATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGC-A-
318 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * * *
11276256 A-GA--CG------ATTTTTCACGATTTTTGAAACATTTTGCGGTTCGAGATTTTTTTAAATTTT
383 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
** *
11276312 TTTGGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
448 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
11276377 AACAATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
11276442 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTAAAGGGGGTGT
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGT
* * ** *
11276506 GAGTTCTCGCGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTATGAGCACCCATTGCA
642 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
11276571 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTC
707 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTC
* * * * * *
11276635 TCCGACGATGCTCCGGCGATGGTGCCCCGACGGAGAAAAATACGGCATCAGCACAGGCTCGAGCC
772 TCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * * *
11276700 CAGCATGTGCTACCGCAACCTTCGGTCTGGTCTGATCTTAGGCTGGGAATGAACTTCGTATG
837 CAGCATGTGCTGCTGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAAC-TC-TATG
* * * * *
11276762 CGTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* ** * ** * *** * ** *
11276827 CGGCCAAAAAGGCGGGATGCGCAAGCTGGGGAACGGTTGGGTCCCCTTCTGCATGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCC-TCTGCGTGCTACCGATCC
* * * * * * * *
11276892 TGCTGCCGTAACCCTCAATCCGGTCCAATCTTAGACTGTGAATGAACTCTGTATGCGTAAGCCAA
130 TGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
11276957 CTGATGAAATGAGTGGGCGGGCGGGCGGGCATTATGCCGGCCAGAGAGACGGGATGCGCAAGCCG
195 CCGACGAAACGAGCGGGCGGGCGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
11277022 TGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTT
** * * *
11277087 TATCACTTATAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * *
11277152 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGA
389 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGA
** ** * *
11277217 TCGAGTTTTGGCCCCATGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
11277282 TTAGCGAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
11277347 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
11277412 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCA-TACCCATCGCACATCAT
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCAT
* * * * * * *
11277476 GTGTGCACACCCCCCTCCGAG-CCCCCCGATAGCCGGAACCCCAATGCC-ACTGGCCAAGTTCTC
713 GTGCGCACA-CCCCC-CCG-GCCCCCCCGATCGTCGAAACCCCAATGCCGTC-GGTCAGGTTCTC
* * * * * * * * * *
11277539 TGACGATGTTCCGACGATGGTGCCCCGGCGAAGAAAAATGCTGCATCAGCACATTCCCTAGTCCA
774 CGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * *
11277604 GCATGTGCT-ATCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATG
839 GCATGTGCTGCT-GCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTC--TATG
* * * * * *
11277664 CTTATACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * * * * * *
11277729 CGACAAGAGGGGTGGGATGCGCGCAAG-CTGAAGATCAATCGGGTCCCCCTCTGCATGCTGCCGA
66 CGGCCAGAGGGGCGGGAT--ACGCAAGCCAG-GGATCGACCGGGT-CCCCTCTGCGTGCTACCGA
* * *
11277793 TCCTGTTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
127 TCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
11277858 CAACTGACGAAACGAGCGGGCGGGC---GGGCACTACGTCGG-CAAAGAGACGGGATGCACAAGC
192 CAACCGACGAAACGAGCGGGCGGGCGGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * **
11277919 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAACACCATT
257 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATT
* *
11277984 TTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACATGATGTTTCATGGCAAGACGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * *
11278048 CTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTCGA-GGTTCGAGATTTTTTAAAATTTTCTC
387 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT-TACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
11278112 -GAAAGGAGTTTTGGCCCCAAACTAGGTAGACGTGATCCCTT-TTTTTTTTTTGGCATGCTA-AA
451 AG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGC-ACAA
* * *
11278174 AAAAATTTAGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
11278239 TTAGACACTTTAATGACTACTGGCAGCAAACCTGCAAAATCTCAAATGTTCTTTAAGGGGGTGTG
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
11278304 AGTTCTCGAGGTTTGATGAGGG-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
643 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
11278368 ATCATGTGCGCACA-CCTCCTGGCCCCCCCGATCGTCGGAACCCCAATACCGCCGGTCAAGTTCT
708 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCT
* * ** * * * *
11278432 CCGACGATGCTCCGACGATGGTGCCTCG--GAAAGAAAAATGTGGCACCAGCATATTCCTGAGTC
773 CCGATGATGCTCCGACGATGGTGCCCCGACG-AAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * *
11278495 CAGCATGTGCTGCCGTAA-CC-C--T-TG----G---TT----T--G-AT----TCGATG
837 CAGCATGTGCTGCTGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTATG
* * *
11278532 -TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
*** * * * * *
11278596 CGAAAAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATACGCAAGCCAGGGATCGACCGGGT-CCCCTCTGCGTGCTACCGATCC
** * * * *
11278661 TGCTGTCGTAACCCTCAGTCTGGTCCAATCATAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
11278726 CCAACGAAACGAGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
195 CCGACGAAACGAGCGGGCGGGCGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
11278791 TGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGTCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
11278856 TATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * *
11278921 CATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTC-AGGATTTTTTAAAATTTTTTCAG
389 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCAG
* * * * *
11278985 AAGCATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
11279050 TTCAGCTAAAAATTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
11279115 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAATGTGGTGTGAGTT
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTT
* * *
11279180 GTTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
11279245 TGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAACGTCGCCGGTCAGATTCTCCGG
712 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * ** ** *
11279308 CGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAACGCGGCACCAGCACATGCCCCAGCCCAGCA
777 TGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
11279373 TGTGCTG-TCGCAACCC-CGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATG
842 TGTGCTGCT-GCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAAC-TC-TATG
*
11279429 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * ** * * ** * **
11279494 CGGCCAGAAGGGTGGGATGCGCAAGCC-GAGGATCGGCTAGCTCCTTCTCCACATGCTGTCGATC
66 CGGCCAGAGGGGCGGGATACGCAAGCCAG-GGATCGACCGGGTCC-CCTCTGCGTGCTACCGATC
* * * *
11279558 CTGCTACCACAACCCTCGATTC-AGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCC
129 CTGCTACCGCAACCCTC-AGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
11279622 AACCGACGAAACGAGCGGGAGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGT
193 AACCGACGAAACGAGC----GGGCGGGCGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * ***
11279687 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGGGCGCCAATGC
253 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGC
*
11279752 CATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
318 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
11279817 ACGACTGGTTTTCTATTTTTCACAATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTT
383 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* *
11279882 TTCGGAATGAGTTTTGGCCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
448 TTCAGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
11279947 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGT-CCCAT
512 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
11280011 TTCAGACACTTCAATGCCTACTGGCAGCAAACCTGTTAAATCTCAAACGCTCTTTAAGGGGGTGT
577 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
11280076 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
642 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
11280141 CATCATGTGCGCACA-CCCCTCGGCCCCCTCTATCGTCGGAACCCCAATGCCGCCGGTCA-G---
707 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTC
* *
11280201 ---G-T--T-CT-C--CGA--------C-A--AAGAAAAATGCAGCACCAGCACAT-CCCGAGCC
772 TCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * *
11280244 CAGCATGTGCTG-TCGTAACCCTCGGTCTGGTCTGATCTGAGACTGGGAATGAACTCCGTATG
837 CAGCATGTGCTGCT-GCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACT-C-TATG
* * * * *
11280306 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * **
11280371 CGGCCAGAGGGGCGAGATGA-GCAAGGCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
66 CGGCCAGAGGGGCGGGAT-ACGCAAGCCAGGGATCGACCGGGT-CCCCTCTGCGTGCTACCGATC
** * ** * * *
11280435 CTGCTATTGTAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCC-TATGCCTAAGCCA
129 CTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * ** * *
11280499 ACCGACGAAACGA----GCAGGC---GAGCACTACGTTGGCCAGGGAGGTGGGATGTGTAAGCCG
194 ACCGACGAAACGAGCGGGCGGGCGGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
11280557 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
11280622 TATGGCTAGTAAATTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACC
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** ** **
11280687 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTC-AGGATTTTTTAAAA-TTTTTGGG
389 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCAG
* * *
11280750 AAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA-AACAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
11280814 TTCAGCTACAAACGCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTCAGA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
11280879 CACTTTAATGGCTACTGGCAGCAAACCTATTAAATCTCAAATGCTCTTTAAGAGGGTGTCAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
11280944 TCAAGGTTTGATGAGTGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCATATCAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** *
11281009 GTGCGTACACCCCCCTCGG-CCCCCTTATCGTCG-AACCCCAATACCGTCGGTCAGGT
713 GTGCGCACACCCCCC-CGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGT
11281065 CGGCCAGAAG
Statistics
Matches: 8363, Mismatches: 1087, Indels: 909
0.81 0.10 0.09
Matches are distributed among these distances:
861 55 0.01
862 196 0.02
863 39 0.00
864 205 0.02
865 117 0.01
866 2 0.00
867 74 0.01
868 8 0.00
869 13 0.00
870 115 0.01
871 245 0.03
872 182 0.02
873 195 0.02
874 6 0.00
875 2 0.00
876 321 0.04
877 524 0.06
878 4 0.00
879 1 0.00
880 1 0.00
881 6 0.00
882 1 0.00
883 1 0.00
884 3 0.00
885 2 0.00
886 217 0.03
887 295 0.04
888 251 0.03
889 8 0.00
890 90 0.01
891 475 0.06
892 11 0.00
893 47 0.01
894 298 0.04
895 232 0.03
896 8 0.00
897 57 0.01
898 769 0.09
899 433 0.05
900 16 0.00
901 102 0.01
902 544 0.07
903 308 0.04
904 107 0.01
905 7 0.00
906 2 0.00
907 2 0.00
908 3 0.00
909 9 0.00
910 5 0.00
911 1 0.00
912 1 0.00
913 6 0.00
914 3 0.00
916 4 0.00
918 1 0.00
919 5 0.00
920 10 0.00
921 4 0.00
923 3 0.00
924 2 0.00
926 4 0.00
927 4 0.00
928 1 0.00
929 6 0.00
930 9 0.00
931 1 0.00
933 1 0.00
934 3 0.00
936 1 0.00
938 3 0.00
939 7 0.00
940 8 0.00
941 2 0.00
943 6 0.00
944 3 0.00
945 2 0.00
946 5 0.00
947 7 0.00
948 3 0.00
949 2 0.00
950 3 0.00
951 3 0.00
953 1 0.00
954 3 0.00
955 3 0.00
956 8 0.00
957 7 0.00
958 6 0.00
959 3 0.00
960 6 0.00
961 14 0.00
962 17 0.00
963 11 0.00
964 3 0.00
965 1 0.00
966 5 0.00
967 20 0.00
968 16 0.00
969 4 0.00
970 1 0.00
971 1 0.00
972 5 0.00
973 4 0.00
975 1 0.00
976 9 0.00
977 2 0.00
978 7 0.00
979 3 0.00
980 2 0.00
981 2 0.00
982 5 0.00
984 1 0.00
985 2 0.00
986 7 0.00
987 6 0.00
988 4 0.00
989 2 0.00
990 5 0.00
991 3 0.00
992 19 0.00
993 13 0.00
994 14 0.00
995 9 0.00
996 8 0.00
997 5 0.00
998 6 0.00
999 5 0.00
1000 8 0.00
1001 7 0.00
1002 13 0.00
1003 15 0.00
1004 10 0.00
1005 4 0.00
1006 3 0.00
1007 13 0.00
1008 3 0.00
1009 1 0.00
1010 1 0.00
1011 4 0.00
1012 3 0.00
1013 91 0.01
1014 368 0.04
1015 137 0.02
1016 665 0.08
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCTCTGCGTGCTACCGATCCT
GCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGAT
GCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCTGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTATG
Found at i:11273722 original size:877 final size:878
Alignment explanation
Indices: 11268522--11273846 Score: 6218
Period size: 876 Copynumber: 6.0 Consensus size: 878
11268512 CAAATTAAGA
* *** * * * *
11268522 TATGCCTAAGTCAACCCGCGAAACGATTGTACGGGCGCTCAGTCGGCCAGAGGGGCGAGATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGC
* * * * * * *
11268587 AAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATCCTACTACCACAACCCTCAGTTCG
66 AAGCCGGGGATCGACCGGGT-CCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCCG
* * * ** *
11268652 GTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACAAACAAAAC-AA-GGGAC--G
130 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGG-CGGG
* * ** *
11268713 -GC-GGCGGGGCAACTACGTCGGGCAGGAGAGACGGGATGCGCAAGCTATGGATCGA-ACAGGTG
194 AGCGGGC-GGGC-ACTACGCCGGCCA-GAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGGTG
* * * ** *
11268775 GCAAGTGGGTTTAGGTACATCCTCATATTT-TTTAGTG-CAATGCCATTTTTATGGCTTTGCAAA
255 GTAGGTGGGTTTAGGTACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGC-TTGTAAA
** *
11268838 TTCATACAATGCGTTCCCTTAAGCCTTCAAATG-AGTTTCATGGCCAAG--GACTC--ATT-T-T
318 TTCATACAATG-G-TCCCTTAAGCCTTCACGTGAAGTTTCATGG-CAAGACGACTCGTTTTCTAT
* * ** * * ** *
11268896 TTTCCATGATTTTTTGAAACTTTTT-GGGTTCGGCATTTTTTAAAATTTTTTTGGAAGGATTTTT
380 TTTTCACGA-TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA-GTTT
11268960 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAA
443 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCT-A
* * *
11269025 AAAACTCGAAGTCTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAA
506 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * * *
11269090 CGCCTACTGGCCGCAAACCTATAAAATCTCAAATGCTCTTTAGAAGGGGTGTGAGTTC-TGAGGT
571 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA-AGGGGGTGTGAGTTCTTGAGGT
*
11269154 TTGATGACGGATA-GGGGCCAATATAAGGGCCAAGTACCAGC-CACCATCGCACATCATGTGCGC
635 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC-CCATCGCACATCATGTGCGC
* * * * *
11269217 -CACACCCCCTGGCCCCCCAGATCGTCGGAACGCCCAAGTGCCGTCGATCAAGTTTCTCCGGCG-
699 ACAC-CCCCCCGGCCCCCCCGATCGTCGAAAC-CCCAA-TGCCGTCGATC-AGGTTCTCCGACGA
* *
11269280 TGCTCCGGCGGATGGTTGCCTCAACGAAGAAAAATCTGGCACCAGCACATGCCCG-GCCCAGCAT
760 TGCTCCGGC-GATGG-TGCCCCGACGAAGAAAAATC-GGCACCAGCACATGCCCGAGCCCAGCAT
* * *
11269344 GGTGCTACCGTAACCAGCGGTCCAGTTCGATCTTAGCTAGGAAAAGAACTCCGTATGCTTTAGAC
822 -GTGCTGCCGCAACC--C--T-C-G---G----TA-CT-GG--ATG-A-T--GTATGC-TTAGAC
*
11269409 TGGGAATCCAACTCCG
864 TGGGAAT-GAACTCCG
* *
11269425 TATGGCCTAATGTCAACCCACGAAAAGAGGCATTTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGG
1 TAT-GCCTAA-GTCAACCCACGAAACGA-GCA--TGCGGGCGCTCAGCCGGCCAGAGGGGC-GGG
* * *
11269490 ATACGCAAGCTGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCT-ATCCTACTGCCGCAACCCT
60 ATACGCAAGCCGGGGATCGACCGGGT-CCCCTCTACGTGCTG-CTGATCCTGCTACCGCAACCCT
* * ** *
11269554 CAGTCCGGTCTGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGATAACCGATGAAACG-A--
123 CAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACG
* **
11269616 -GC-GG-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAAACGTGGATCGATAGGG
188 GGCGGGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *** * *
11269678 TGGTAGGTGGGTTTAGGCACATCTTCATATCTCTATGTGCCAATGCCATTTTTACGGCTAGTAAA
253 TGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
11269743 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGGTTCATGGCAAGACGACTCATTTTCTATTTT
318 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* ** * *
11269808 TCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACC
383 TCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
*
11269873 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACT
448 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACT
* * * * *
11269938 AGAACTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATAGCTA
512 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
**
11270003 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCAGTGAGTTCTTGAGGTTTGATGA
577 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
* *
11270068 GGGATAGGAGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCACACCCCC
642 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * ** * * * *
11270131 TCGGGCCCCCCGATCGTCGAAACCCTAATGCCACCGATCAAGATCTCTGACGATGCTCCAGCGAT
707 CCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGGCGAT
* * *
11270196 GGTGCCCCGACGAAGAAAAATCTGGCACCAACAAATGCCCGAGCCCAACATGTGCTGCCGCAACC
772 GGTGCCCCGACGAAGAAAAATC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * **
11270261 CTTGGT-C-CGAT-CCG-AT-CTTAGACTGGGAATGAACTCCG
836 CTCGGTACTGGATGATGTATGCTTAGACTGGGAATGAACTCCG
* *
11270299 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGA-G
1 TATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT-ACG
* * *
11270363 CAAGCCGGGGATCGACCGGGTCTCCCTCTACGTGCTACTGATCCTGCTACCGTAACCCTCAGTCT
65 CAAGCCGGGGATCGACCGGGTC-CCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCC
** * * * * * *
11270428 GGTTTGATCTTAGACTGGGAATAAACTCTGTATGCCTAGGCCAACCGACGAAACGAGCCGGTGGA
129 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGG-
* * * *
11270493 TGGGCGGGCGGGCACTACGTCGGCCAGATAGACGGGATGCGCAAGCCGTGGAACGATAGGGTGGT
193 -GAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
11270558 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAATTCA
257 AGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
11270623 TACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGAGTCGTTGTCTATTTTTCAC
322 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * **
11270688 GATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGTTCCAA
387 GATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
11270753 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
452 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAA
11270818 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
516 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
11270883 CAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTCCTCGAGGTTTGATGAGGGA
581 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
* *
11270948 TAGGGGGACAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
646 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* *
11271012 CCCCCCCGATCGTCGAAACCGCAATGCC-TCCGATCAGGTTCTCCGACGATGCTCCGACGATGGT
711 CCCCCCCGATCGTCGAAACCCCAATGCCGT-CGATCAGGTTCTCCGACGATGCTCCGGCGATGGT
* * *
11271076 GCCCCGGCGAAGAAAAAT-GTTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCT
775 GCCCCGACGAAGAAAAATCG--GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-
*
11271140 CGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGCGAATGAACTCCG
836 C--T-C-G---G----T--ACT-GG-ATG-A--T-GTATGCTTAGACTGGGAATGAACTCCG
* * * * * *
11271202 TATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCCATAGGGGCGGGATACGT
1 TATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGC
* * * * * * * * *
11271267 AAGTCGAGGATCGACCGGATCCCCTTCGACGTGCT-ATCGATCCTGCTGCCCCAACCCTCGGTCT
66 AAGCCGGGGATCGACCGGGTCCCC-TCTACGTGCTGCT-GATCCTGCTACCGCAACCCTCAGTCC
* *
11271331 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC---C-AGC-GG
129 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGG
* *
11271391 A-CGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCGGTGGATCGATAGGGTGGTAG
194 AGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * **
11271455 GTGGATTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
259 GTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
11271520 TAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
324 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * * * * *
11271585 TTTTTGAAAC-TTTTCCGGTTCCGAATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGGCCCAAAC
389 TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* *
11271649 TT-G--GACGTGATCCTTGTATTTTTGTTGCCATGCATAAAAAAATTCAGCTAAAAACTCGAAGT
454 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCGAAGT
* *
11271711 GTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCA
518 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
** * * **
11271776 ATAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCAAGGTTTGATGAGGGATA
583 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
** *
11271841 AAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGGC
648 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * * ** * *
11271905 CCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCAGTGATGGTGCC
713 CCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
* * *
11271970 CCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTGGAACCCTCGGT
778 CCGACGAAGAAAAAT-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-
**
11272035 CTGATCTGATCTTAGACTGGGAATGAACTTCTCATGCTTAGACTGGGAATGAACTCTA
841 -T-A-CTG------GA-T--G-ATG------T-ATGCTTAGACTGGGAATGAACTCCG
* * * * * *
11272093 TATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCTGGCCAGAAGGGCAGGTTACGC
1 TATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGC
** *** * ** * * * * *
11272158 AAGCCATGGATCGGTTGGGTCCCCTCTGCGTGCTGCCAATCTTGCTACTGCAACCCTCAATTCGA
66 AAGCCGGGGATCGACCGGGTCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCCGG
* * *
11272223 TCCAATCTTAGACTGGGAATGACCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-G
131 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGAG
*
11272286 CGGG-GAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGG
196 CGGGCG-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
11272350 TGTGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
260 TGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
11272415 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGAT
325 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * * * *
11272480 TTTCAAAACTTTATGCGATTCGAGATTTTTTAAATTTTTTTCAGAGGGAGTTTTAGCCCCATACT
390 TTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
11272545 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTG
455 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTG
* *
11272610 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGACAG
519 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
11272675 CAAACTTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAG
584 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
* * * * * *
11272740 GGGGCCAATATAAGGGCCAAGAACTAGCACTCATCTCACATCATGTGCGCACGCCCCCCCGACCC
649 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* * * * * *
11272805 CTCCGATCATCG-GACCCCAATGCCGTCTG-TCAGGTTCTCCGATGATCCTCCGGCGATGGTTCC
714 CCCCGATCGTCGAAACCCCAATGCCGTC-GATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
* * * *
11272868 CCGGCGAAGAAAAATGCGGCCCCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
778 CCGACGAAGAAAAAT-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
11272933 AC-GG-TG-TG-AT-CTTAGACTGGGAATGAACTCTG
842 ACTGGATGATGTATGCTTAGACTGGGAATGAACTCCG
* * * **
11272965 TATGCCTAAGTCAACCTA-GTAAACGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGTG
1 TATGCCTAAGTCAACCCACG-AAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACG
* * * ** *
11273029 AAAGCCAGGGATCGATCGGGTCCCCTTCTGTGTGCTGCTGATCCTGCTACTGCAACCCTCAGTCC
65 CAAGCCGGGGATCGACCGGGTCCCC-TCTACGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCC
11273094 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGG
129 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGC-GG
* * * * *
11273159 TGAGAGGGCGGGCACTATGCCAGCCAGAGAGACAGAATGCGCAAGCCGTGGATCGATAGGGTGGT
193 -GAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
11273224 TGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
257 AGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * *
11273289 TATAGTGGTCCCTTAAGCCTTCACGTGAAGATTCATGGAAAGACGACTCGTTTTCTATTTTTCAT
322 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* *
11273354 GATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGATGGAGTTTT-GCCCCAA
387 GATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* *
11273418 ACTTTGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAA
452 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAA
* *
11273483 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTAAGACACTTTAATGGCTACTGG
516 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
11273548 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
581 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
* **
11273613 TAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCTTACATCATGTGCGCACACCCCCCCGG
646 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * ** *
11273678 CCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGCTCCGACGATGGTG
711 CCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGGCGATGGTG
* * * * *
11273743 CCCCGATGAAGAAAAATACTGCACCAGCACATTCCCGAGCCCAGAATGTGCTGCTGCAACCCTCG
776 CCCCGACGAAGAAAAAT-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * *
11273808 GT-TTGG-T-CTG-AT-CTTAGATTGGGAATGAACTCTG
840 GTACTGGATGATGTATGCTTAGACTGGGAATGAACTCCG
11273842 TATGC
1 TATGC
11273847 TTAGATTGGC
Statistics
Matches: 3849, Mismatches: 452, Indels: 268
0.84 0.10 0.06
Matches are distributed among these distances:
867 3 0.00
868 107 0.03
869 26 0.01
871 3 0.00
872 110 0.03
873 100 0.03
874 10 0.00
875 16 0.00
876 722 0.19
877 475 0.12
878 9 0.00
879 4 0.00
880 3 0.00
881 3 0.00
882 1 0.00
883 3 0.00
884 2 0.00
885 6 0.00
886 2 0.00
887 6 0.00
889 2 0.00
890 79 0.02
891 430 0.11
892 1 0.00
893 7 0.00
894 240 0.06
895 233 0.06
896 6 0.00
897 5 0.00
898 318 0.08
899 21 0.01
900 2 0.00
901 1 0.00
902 54 0.01
903 220 0.06
904 33 0.01
905 97 0.03
906 69 0.02
907 127 0.03
908 145 0.04
909 147 0.04
910 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (878 bp):
TATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGC
AAGCCGGGGATCGACCGGGTCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCCGG
TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGAG
CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
CCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
ACGAAGAAAAATCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTACTG
GATGATGTATGCTTAGACTGGGAATGAACTCCG
Found at i:11273849 original size:26 final size:26
Alignment explanation
Indices: 11273820--11273870 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11273810 TTGGTCTGAT
* *
11273820 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGCAATGAACTCCGTATG
11273846 CTTAGATTGGCAATGAACTCCGTAT
1 CTTAGATTGGCAATGAACTCCGTAT
11273871 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAGATTGGCAATGAACTCCGTATG
Found at i:11274865 original size:26 final size:26
Alignment explanation
Indices: 11274836--11274886 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11274826 TTGGTCTGAT
* *
11274836 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGCAATGAACTCCGTATG
11274862 CTTAGATTGGCAATGAACTCCGTAT
1 CTTAGATTGGCAATGAACTCCGTAT
11274887 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAGATTGGCAATGAACTCCGTATG
Found at i:11275886 original size:26 final size:26
Alignment explanation
Indices: 11275850--11275902 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11275840 CTAATGCGAT
*
11275850 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11275876 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11275902 C
1 C
11275903 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11277407 original size:899 final size:898
Alignment explanation
Indices: 11274973--11281064 Score: 7694
Period size: 902 Copynumber: 6.9 Consensus size: 898
11274963 CCGGTCTGAT
* * * * *
11274973 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
11275038 CGGCCAGAGGGGCGGGATGCACAAGGCGGGGATCGATCGAGTCCCCCTCTACGTGCTACCGATCC
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * * * *
11275103 TGCTGCCACAACCCTCAGTCCGATCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
11275168 CCGACGAAACGAACGGGCGGGTGAGAGGGCGGGCACTATGCCAGCCAGAGAGACAGAATGCGCAA
196 CCGACGAAACG-A-GGG-GCG-G-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
11275233 GCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
11275298 TTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
11275363 GACTCGTTTTTTATTTTTCAC-AATTTTAAAAATTTTTGCAGTTCGAGATTTTTTAAAATTTTTT
386 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* *
11275427 CGGAAGGCA-TTCTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
451 CGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
11275491 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
11275556 CATACACTTTAATGGCTACTTGCAGCAAACATGTAAAATCTCAAATGCTTTTTAA-GGGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
11275620 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGAACCAGCACCCATCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
11275685 TCATGTGCGCACACCCCGCCCGGCCCCCCCGTTC-ACTGGAACCCCAATGCCGCTGATCAGGTTC
710 TCATGTGCGCACA-CCC-CCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTC
** * * * * * *
11275749 TCCGTTGATGCTCCGACAATTGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACCTGCCTGAGCC
772 TCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * * *
11275814 CAACATGTGCTACTGCAACCCTCGATCTAATGC-GATCTTAGATTGGGAATGAACTCCATATG
837 CAGCATGTGCTACCGCAACCCTCGGTCTGAT-CTGATCTTAGACTGGGAATGAACTTCGTATG
* *
11275876 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-TAGAACGAGCGTACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAG
* * * * * * * *
11275940 CC-ACCAGAAGGGCTGGATGTGCAAGCCGAGGATCGGTCTGGTCACCCTCTACGTGCTGTCGATC
65 CCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * *
11276004 CTTCTGCCGTAACCCTTGATCCAGTCTGATCTTAGACTGGGAATGAACT-CATATGCCTAAGCCA
130 CTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
11276068 ACCAACAAAACGAGGGGACGGGCGGGCGGGCACTACGTCAGG-CAGAGAGACGGGATGCGCAAGC
195 ACCGACGAAACGAGGGG-CGGGCGGGCGGGCACTACG-CCGGCCAGAGAGACGGGATGCGCAAGC
** * * * * * **
11276132 TATGGATCGAAAGGGTGGCAAGTGGGTTTAGGTACATCCTCATATTT-TTTAGTGCCAATGCCAT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCAT
* *
11276196 TTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGC-A-A-G
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
11276258 A--CG------ATTTTTCACGATTTTTGAAACATTTTGCGGTTCGAGATTTTTTTAAATTTTTTT
387 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* *
11276315 GGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAC
452 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
11276380 AATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
11276445 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTAAAGGGGGTGTGAG
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAG
* * ** *
11276509 TTCTCGCGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTATGAGCACCCATTGCACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
11276574 CATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
711 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * * *
11276639 ACGATGCTCCGGCGATGGTGCCCCGACGGAGAAAAATACGGCATCAGCACAGGCTCGAGCCCAGC
776 ACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
11276704 ATGTGCTACCGCAACCTTCGGTCTGGTCTGATCTTAGGCTGGGAATGAACTTCGTATG
841 ATGTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATG
* * * *
11276762 CGTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
11276827 CGGCCAAAAAGGCGGGATGCGCAAGCTGGGGAACGGTTGGGTCCCCTTCTGCATGCTGTCGATCT
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * * * *
11276892 TGCTGCCGTAACCCTCAATCCGGTCCAATCTTAGACTGTGAATGAACTCTGTATGCGTAAGCCAA
131 TGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
11276957 CTGATGAAATGAGTGGGCGGGCGGGCGGGCATTATGCCGGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGACGAAACGAG-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
11277022 TGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
** * * *
11277087 TATCACTTATAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
11277152 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGA
390 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
** ** * *
11277217 TCGAGTTTTGGCCCCATGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAAT
455 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
11277282 TTAGCGAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
520 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
11277347 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCT
585 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
11277412 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCA-TACCCATCGCACATCAT
650 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCAT
* * * * * * * *
11277476 GTGTGCACACCCCCCTCCGAG-CCCCCCGATAGCCGGAACCCCAATGCCACTGGCCAAGTTCTCT
714 GTGCGCACA--CCCC-CCG-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
11277540 GACGATGTTCCGACGATGGTGCCCCGGCGAAGAAAAATGCTGCATCAGCACATTCCCTAGTCCAG
775 GACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
11277605 CATGTGCTATCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAC-TCTGTATG
840 CATGTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTC-GTATG
* * * * *
11277664 CTTATACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * * *
11277729 CGACAAGAGGGGTGGGATGCGCGCAAGCTGAAGATCAATCGGGTCCCCCTCTGCATGCTGCCGAT
66 CGGCCAGAAGGGCGGGAT--GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGAT
* * *
11277794 CCTGTTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
11277859 AACTGACGAAACGA---GCGGGCGGGCGGGCACTACGTCGG-CAAAGAGACGGGATGCACAAGCC
194 AACCGACGAAACGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* **
11277920 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAACACCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
11277985 TTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACATGATGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
11278049 TCGTTTTTTATTTTTCACGATTTTTGAAACTTTTCGAGGTTCGAGATTTTTTAAAATTTTCTCGA
389 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGG
* * *
11278114 AAGGAGTTTTGGCCCCAAACTAGGTAGACGTGATCCCTT-TTTTTTTTTTGGCATGCTA-AAAAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGC-ACAAAAA
* * * *
11278177 AATTTAGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTTA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
11278242 GACACTTTAATGACTACTGGCAGCAAACCTGCAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
11278307 TCTCGAGGTTTGATGAGGG-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
11278371 ATGTGCGCACACCTCCTGGCCCCCCCGATCGTCGGAACCCCAATACCGCCGGTCAAGTTCTCCGA
712 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * * * * *
11278436 CGATGCTCCGACGATGGTGCCTCGG-AAAGAAAAATGTGGCACCAGCATATTCCTGAGTCCAGCA
777 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
11278500 TGTGCTGCCGTAA-CC-C--T-TG----G----T----T-----TG-A-TTCG-ATG
842 TGTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATG
* *
11278532 -TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*** * * *
11278596 CGAAAAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
11278661 TGCTGTCGTAACCCTCAGTCTGGTCCAATCATAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
11278726 CCAACGAAACGAGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGACGAAACGAG-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
11278791 TGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGTCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
11278856 TATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
11278921 CATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTC-AGGATTTTTTAAAATTTTTTCAG
390 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGG
* * * * *
11278985 AAGCATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
11279050 TTCAGCTAAAAATTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
11279115 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAATGTGGTGTGAGTT
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTT
* * *
11279180 GTTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
11279245 TGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAACGTCGCCGGTCAGATTCTCCGGC
713 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * *
11279309 GATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAACGCGGCACCAGCACATGCCCCAGCCCAGCAT
778 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
**
11279374 GTGCTGTCGCAACCC-CGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATG
843 GTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATG
* *
11279429 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** ** *
11279494 CGGCCAGAAGGGTGGGATGCGCAAGCCGAGGATCG-GCTAGCTCCTTCTCCACATGCTGTCGATC
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGTCGATC
* ** * * * *
11279558 CTGCTACCACAACCCTCGATTCAGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCA
130 CTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
11279623 ACCGACGAAACGAGCGGGAGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGTA
195 ACCGACGAAACGA----G-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * ***
11279688 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGGGCGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
11279753 ATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** ** *
11279818 CGACTGGTTTTCTATTTTTCACAATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
385 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
*
11279883 TCGGAATGAGTTTTGGCCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
450 TCGGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
11279948 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGT-CCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
11280012 TCAGACACTTCAATGCCTACTGGCAGCAAACCTGTTAAATCTCAAACGCTCTTTAAGGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
11280077 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
11280142 ATCATGTGCGCACACCCCTCGGCCCCCTCTATCGTCGGAACCCCAATGCCGCCGGTCAGG---T-
709 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
*
11280203 ------T-CTCCGAC-A-------------AAGAAAAATGCAGCACCAGCACAT-CCCGAGCCCA
774 CGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
** * * * *
11280246 GCATGTGCTGTCGTAACCCTCGGTCTGGTCTGATCTGAGACTGGGAATGAACTCCGTATG
839 GCATGTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATG
* * * *
11280306 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
11280371 CGGCCAGAGGGGCGAGATGAGCAAGGCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
*** * * *
11280436 TGCTATTGTAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCC-TATGCCTAAGCCAA
131 TGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * ** * *
11280500 CCGACGAAACGA-------GCAGGCGAGCACTACGTTGGCCAGGGAGGTGGGATGTGTAAGCCGT
196 CCGACGAAACGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
11280558 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
261 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
11280623 ATGGCTAGTAAATTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCC
326 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
11280688 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTC-AGGATTTTTTAAAA-TTTTTGGGA
391 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGA
* * *
11280751 AGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA-AACAAAAT
455 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
11280815 TCAGCTACAAACGCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTCAGAC
520 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
11280880 ACTTTAATGGCTACTGGCAGCAAACCTATTAAATCTCAAATGCTCTTTAAGAGGGTGTCAGTTCT
585 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
11280945 CAAGGTTTGATGAGTGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCATATCATG
650 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * *
11281010 TGCGTACACCCCCCTCGG-CCCCCTTATCGTC-GAACCCCAATACCGTCGGTCAGGT
715 TGCGCACA-CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
11281065 CGGCCAGAAG
Statistics
Matches: 4537, Mismatches: 559, Indels: 226
0.85 0.11 0.04
Matches are distributed among these distances:
861 55 0.01
862 199 0.04
863 37 0.01
864 209 0.05
865 110 0.02
867 74 0.02
868 3 0.00
869 23 0.01
870 116 0.03
871 247 0.05
872 89 0.02
873 104 0.02
874 3 0.00
876 55 0.01
877 208 0.05
878 1 0.00
880 1 0.00
881 1 0.00
884 1 0.00
885 2 0.00
886 211 0.05
887 301 0.07
888 245 0.05
889 8 0.00
890 2 0.00
891 9 0.00
892 5 0.00
893 45 0.01
894 67 0.01
895 5 0.00
896 10 0.00
897 196 0.04
898 455 0.10
899 411 0.09
900 26 0.01
901 122 0.03
902 622 0.14
903 155 0.03
904 104 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
GCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATG
Found at i:11277689 original size:26 final size:26
Alignment explanation
Indices: 11277638--11277690 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11277628 CCGATCCGAT
**
11277638 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11277664 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11277690 C
1 C
11277691 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11279439 original size:26 final size:26
Alignment explanation
Indices: 11279403--11279455 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11279393 CTGATCTGAT
*
11279403 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11279429 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11279455 C
1 C
11279456 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11280319 original size:26 final size:26
Alignment explanation
Indices: 11280283--11280332 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11280273 GTCTGATCTG
*
11280283 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTACGTATGCTT
11280309 AGACTGGGAATGAACTACGTATGC
1 AGACTGGGAATGAACTACGTATGC
11280333 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTACGTATGCTT
Found at i:11283480 original size:26 final size:26
Alignment explanation
Indices: 11283444--11283496 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11283434 CTTGTCCGAT
11283444 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
11283470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
11283496 C
1 C
11283497 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:11283993 original size:904 final size:899
Alignment explanation
Indices: 11282726--11286214 Score: 4865
Period size: 903 Copynumber: 3.9 Consensus size: 899
11282716 GGTTCGGTCC
* * *
11282726 GATCTTAGACTAGGAATGAATTCCATATGCCTAAGCCAATCGACGAAACGAGCAGGCGGGCGGGC
1 GATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGC
* * * *
11282791 GGGG-ACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTTGTAGGTGGGT
66 GGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
11282855 TTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
** * *
11282920 TCATTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCCGATTTTTG
* * * * * *
11282985 AAACTTTTTGCGGTTCGGGATTTTTTAAACTTTTTTCGGAAGGAGTTTGGGCGCCAAACTTGGTA
260 AAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
11283050 GACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* * * *
11283114 AGAATTTGTGACCGTTTGAAAAAAGTGTCACCATTTCTA-ACACTTTAATGGTTACTGGCAGCAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTTAATGGCTACTGGCAGCAA
* * *
11283178 GCCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCAAGGTTTTGATGAGGGATAAGG
454 ACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGG
*
11283243 GGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * *
11283308 CGACCGTCGGAACCCCAAAGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
583 CGATCGCCGGAACCCCAAAGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
* * * *
11283373 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTTGATCTTG
648 CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGATC-CG
*
11283438 -TCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
712 ATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
11283502 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCATAGGGGCGGGATGCGCAAGCCGGGGA
777 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * ** * **
11283567 TCGACCGGGTCCTCGTCTGCTTGCTGTTGATTTTGCTGCTGTAACCCTCGGTCCAGTCT
842 TCGATCGGGTCCCCCTCTGCCTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCTGGT-T
* *
11283626 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGC
1 GATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGC
* * *
11283691 GCGCCGGCACTACGTCGGCCAGCGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAAGTG
66 G-G--GGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
11283756 GGTTTGGGCACATCTTCATATTTCTGCATGCGAATGCCATTTTTATGGCTTGTAAATTCATACAA
128 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
11283821 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCCTGATTT
193 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCC-GATTT
* * *
11283886 TTGAAA-ATTTTACGGTTCGAGATTTTTTAAAATTTTCTCAGAAGGAGTTTTGGCTCCAAACCTT
257 TTGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-CTT
* * * *
11283950 -TTAAACGTGATCCTTGTATTTTTTTTGGCAAGCACAAAAAAAATTCAGCTAAAAACTCAAAGTG
321 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTG
11284014 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTGGCAG
386 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTGGCAG
* * * *
11284079 CAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTCCTCGAGGTTTGATGTGGGATAG
451 CAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
11284144 GGGGCCAATATAAGGGCTAAGTACGAGCACCCATCGCACATCATGTGCGAACACCCCCTGGCCCC
516 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * *
11284209 CCCGATCGCCGGAAACCCAAAGCCGTCGGTCAGGTTCTTCAACGATGCTTCGGCGATGGTGCCCC
581 CCCGATCGCCGGAACCCCAAAGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * *
11284274 GATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC-TCAGTC
646 GACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGA-T-
* * * *
11284338 CCG-TCCGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCATATGCCT
709 CCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
11284402 AAGTCAACCCACGAAACGAGCGTACGGGTGCTCAACCAGCCAGAGGGGCAGGATGCGCAAGTCGG
774 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * *
11284467 AGATCGGTCAGGTCCCCCTCTGCCTGTTGTCGATCCTACTACCGTAACCCTCGATCTGGTT
839 GGATCGATCGGGTCCCCCTCTGCCTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCTGGTT
* * * *
11284528 CAATCTTAGACTACGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGTGC--G-A-ACGGG
1 -GATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGG
* * * *
11284589 -TGGGCACTACGTCGGCCAGAGAGACAGGATGCACAAGTCGTGGATCGATAGAGTGGTAGGTGGG
65 CGGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *** *
11284653 TTTAGCCACATCTTCATGTTTTTGCGCACCAATGACACTTTTTATGGCTTGTAAATTCATACAAT
130 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAAT
* *
11284718 GGTCCCTTAAGCCTTCACGTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-CGATTTT
* * *
11284783 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTAG
258 TGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
11284848 TAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATTCAGCCAAAAACTCAAAGTGTA
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTA
* * * *
11284913 CAAGATTTTATAACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGTAGCA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTGGCAGCA
*
11284978 AACCTGTAAAATCTCAAACGCTA-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
453 AACCTGTAAAATCTCAAATGC-ACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
11285042 GGGCCAATATAAGGGACAAGTACCAGAACCCATCGCACATCATGTGTGCACACCCCCTGGCCCCC
517 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* *
11285107 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCTCG
582 CCGATCGCCGGAACCCCAAAGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
** * ** * * *
11285172 GTGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCATGTGCTATCGTAACCCTTGGTCTG
647 ACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGATCCG
* * *
11285237 ATCTGGTC-TAC-CATGGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTA
712 ATCCGATCTTACAC-T-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
*
11285300 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGG
775 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * **
11285365 GATCGATCGGG-CCCCCTCTACGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTTT
840 GATCGATCGGGTCCCCCTCTGCCTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCTGG-TT
* * * *
11285425 GATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
1 GATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA----GCAGGCAGGC
* ** * *
11285490 GGGC-GGGCACTACGCCGGCCAGAGAGATGGGATGCGTAAGCCGTGGATCGATAAGGTGGTAGGT
62 GGGCGGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
11285554 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
127 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
11285619 ATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
192 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-CGATT
** * * * * * *
11285684 TTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT-TCCCCAAACTT
256 TTTGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
11285748 GGTAGACGTGATCCTTGTATTTTTGTTAGCATGCAC-AAAAATATTCAGCTAAAAACTCGAAGTG
321 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTG
* *
11285812 TACATGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTGGCAG
386 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTGGCAG
* * * *
11285877 CAATCTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
451 CAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
11285942 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACA-CCCCC-G----
516 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * * * *
11286001 -CCGATCGCCAGAACGCCAATGCCGTCGGTCAGGTTTTTCGACGATGCTCCGACGATGGTGCCCC
581 CCCGATCGCCGGAACCCCAAAGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * * *
11286065 AACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGTTGCCGTAA-CCTTCGGTC
646 GACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTT-GATC
* * * *
11286129 CGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGCATGCCTA
710 CGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
11286194 AGTCAACCCACGAAACGAGCG
775 AGTCAACCCACGAAACGAGCG
11286215 GGCAGGCAGG
Statistics
Matches: 2301, Mismatches: 254, Indels: 74
0.88 0.10 0.03
Matches are distributed among these distances:
893 4 0.00
894 182 0.08
895 90 0.04
896 183 0.08
897 519 0.23
898 1 0.00
899 5 0.00
900 68 0.03
901 194 0.08
902 47 0.02
903 613 0.27
904 395 0.17
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
GATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGC
GGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCCGATTTTTGA
AACATTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
TCGCCGGAACCCCAAAGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGATCCGATCC
GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
TCGGGTCCCCCTCTGCCTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCTGGTT
Found at i:11284376 original size:26 final size:26
Alignment explanation
Indices: 11284347--11284399 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11284337 CCCGTCCGAT
*
11284347 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
11284373 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
11284399 C
1 C
11284400 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:11286174 original size:26 final size:26
Alignment explanation
Indices: 11286138--11286190 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11286128 CCGATCCGAT
*
11286138 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGCATG
11286164 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTTCGCATG
11286190 C
1 C
11286191 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGCATG
Found at i:11286912 original size:26 final size:26
Alignment explanation
Indices: 11286883--11286935 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11286873 CCAGTTCGAT
11286883 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11286909 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11286935 C
1 C
11286936 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11287818 original size:26 final size:26
Alignment explanation
Indices: 11287789--11287841 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11287779 CCGGTCCGAT
*
11287789 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11287815 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11287841 C
1 C
11287842 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11288690 original size:903 final size:899
Alignment explanation
Indices: 11286164--11291497 Score: 7143
Period size: 903 Copynumber: 5.9 Consensus size: 899
11286154 ACTTCGTATG
* * * * * *
11286164 CTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACCCACGAAACGAGCG-GGCAGGCAGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGGCGGGCGG
* * *
11286228 GCACTACACCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
11286293 GGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATCGCATGTAAATTCATACAATGGTCC
131 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * ***
11286358 CTTAAGCCTTTACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTCCAAAA
196 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAA
** * * * * *
11286423 CTTTTTGTGGTTCGGGATTTTTTATAATATTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTATAC
261 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
11286488 GTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
326 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTTAAAACTCGAAGTGTACAAGAT
* *
11286553 TTTGTGACCATTTAAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
11286618 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
11286683 TATAAGGGCCAAGTACCGGCA-CCATCGCACATTAGGTGCGCACACCCCCCGGCCCCCCCGATCG
521 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCCCCGG-CCCCCCGATCG
* * * **
11286747 TCGGAACCCTAATGCCACCGATCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGACGAAGA
585 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * ** * * *
11286812 AAAATGTGGCACCAGCACCAGCACATGCCCGAGCCCTGCATGTGCTATCGTAAACCTCGGTCCAG
650 AAAA--T-G---CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
11286877 TTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
709 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
11286942 CAACCCACGAAACGAGCGTGCGGGTACTCAACCGGCCAAAGGGGCGAGATGGGCAAGCCGGGGAT
774 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * * * * * *
11287007 CGAACGGGTCCCCCTCTACGTGCTACCGATCCTACTGCCGCAACCCTC-AATCTGGTCTGAT
839 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGATC-AGTCTGAT
** * * *
11287068 CTTAGACTGTAAATGAACACCGTATGCCTAAGCCAACCGCCGAAACGAGCGGGCGGGCGAGCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-AGGC--G-GG-
* * * *
11287133 CGGGCGGGCATTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATTGATAGGGTGGTAGGT
59 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
11287198 GGGTTTAGGCAAATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG-TTGTAAATTCATACA
124 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
11287262 ATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGAGT
189 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATT
* *
11287327 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTTTGGAAGGATTTTTGGCCCCAAACTT
254 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
* * *
11287392 GGTAGAAGTGATCCATGTATTTCTGTTGGCATGCACAAAAAAATTCAGCTTAAAACTCGAAGTGT
319 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTTAAAACTCGAAGTGT
* *
11287457 ACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTTGCAGC
384 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
11287521 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
449 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
11287586 GGGCCAATATAAGGGCAAAGTGCCAGCACCCATCGCACATCATGTGCGTACACCCCCATCGGCCC
514 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCCC--CGGCCC
* * **
11287651 CCCGATCGTCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCC
577 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * * * * *
11287716 -AGTGAAGAAAAATGCGGCACCAACACAAGCCCGAGCCCAGCATGTACTACTGCAACCCTCGGTC
642 GA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* *
11287780 CGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
706 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * ** **
11287845 AGTCAACCCATGAAATGAGCGTGCGGGTGCTCAATCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
771 AGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * *
11287910 GATCGG-CTGTGTCCCCCTCTGGGTGCTGCCAATCCTGCTACCGTAACACTCGGTTCAGTCTGAT
836 GATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGATCAGTCTGAT
*
11287974 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-AGGCGGGCGGG
*
11288039 CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
63 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
11288104 TTAGGCACATCTTCATATTTCTGCATGCCAAT-CCATTTTTATGGCTTGTAAATTCGTACAATGG
128 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
11288168 TCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTG
193 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTG
* ** *
11288233 AAACTTTTTGGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGT
258 AAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
11288298 ATACGTGATCCTTGTATTTTTTTTGGCAGGCACAAAAAAATTTAGCTTAAAACTCGAAGTGTACA
322 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTTAAAACTCGAAGTGTACA
* *
11288363 AGATTGTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAGACTTTAATGGCTACTGGCAGCAAA
387 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
11288428 CCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG
452 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** * * *
11288493 CCAATATAAGGGTGAAGTACCAGCACCCATCGCACATTATGTGTGTACACCCCCCGGCCCCCCTG
517 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCCCCGGCCCCCC-G
* * * * * * *
11288558 ATCGCCAGAACCCCAATGCCGTCGGCCAGGTTCTCCGACGATGCTCTGGCGGTGGTGCCCCGAGG
581 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACG
** * ** * * *
11288623 AAGAAAAATATGGCACCAGCATATGCCCGAGCCTGGCATGTGCTGCTGCAACCCTCAGTCTGGTC
646 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* *
11288688 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
711 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * **
11288753 ATACACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGATGGGGATCG
776 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * * * * *
11288818 ATAGGGGCCCCCTCTGTGTGCTGCCGATCCTGCTACCGGAATCTTTGG-TCCGATCTAAT
841 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGATCAG-TCTGAT
* *
11288877 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACCAAACGAGCG-GGCGGGCGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGGCGGGCGG
11288941 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
11289006 GGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCC
131 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * **
11289071 CTTAAGCCTTCACGTGAAGTTTTATGG-AAGACGACTTGTTTTTTATTTTT-ACGATTTTCAAAA
196 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAA
* *
11289134 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGG-CGCAAAGCTTGGTAGA
261 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA-CTTGGTAGA
** *
11289198 CACGATCCTTGTATTTTTGTTGGCATGCAC-AAAACATTCAGC-TAAAACTCGAAGTGTACAAGA
325 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTTAAAACTCGAAGTGTACAAGA
* *
11289261 TTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
11289326 GTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA--GGGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
11289389 AAATAAGGGGCAAGTACCAGCACCCATCACACATCATGTGCGCATAC-CCCCCCGGCCCCCCCGA
520 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG--TACACCCCCCGG-CCCCCCGA
** * * * *
11289453 TCACCGGAACCCCAATGCCGCCGGTCAGGTTTTCC-AGTGATGCTCCGGCTATGGTGCCCCGACA
582 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGACG
* * * * * * *
11289517 AAGAAAAATGTGGCTCCAGCACTTGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATTCGATC
646 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * ** * *
11289582 CAATCATAGACTGGGAATGAACAACGTATGCTTAGATTGGGTATGAACTCCGTATGCCTAAGTCA
711 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
11289647 ACCCACGAAATGAGCGAGCGGGCACTCAGCCAGCCAGAAGGGTGGGATGCGCAAGCCGAGGATTG
776 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * *
11289712 GTCGGGTCCCCCTCTGCATGCTGCCGATCCTACTATCGTAACCCTCGG-TCCAATCCGAT
841 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGAT-CAGTCTGAT
* * * *
11289771 CTTAGACTAGGAATGAACTCAGTATGCCTAAGCCAACCGATGAAACGAGTGA-----GC-GGC--
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGGCGGGCGG
** * *
11289828 -CACTACGCCGGCCAGAGAGACATGATGTGCAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
11289892 GGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAGATTCATACAATGGTCC
131 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
11289957 CTTAAGCCTTCACGTGAAGTTTCATGCCAAGACAACTCGTTTTATATTTTTCATGATTTTTGAAA
196 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAA
* * * * * * **
11290022 CTTTTTGC-ATTCGGGATTTTTTAAAATTTCTTCGGAAGGACTTTTGGTACCAAACTTGGTAGAC
261 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
11290086 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGAT
326 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTTAAAACTCGAAGTGTACAAGAT
* *
11290151 TTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
11290216 TAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
11290281 TATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCATACACCCCCCGGCCCCCCGATCGT
521 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCCCCGGCCCCCCGATCGT
* * * *
11290346 CGGAACCCCAATGCCG-CGTTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGATGAAGAA
586 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* * * * * * * *
11290410 AAATGCGACAACAACACATGCTCGAGCCCAGCATATGCTGCCACAACCCTTGGTCCGGTTCGATC
651 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* * *
11290475 TTAGA-TAGGGAATGAACTCCGTATGCTGAGACTGGGAATGAACTCTGTATGCCTATGTCAACCC
716 TTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
11290539 ACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGGAAGTCGAGGATCGGTCG
780 ACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
* * * * * *
11290604 GGTCCCCCTCTGTGTGCTGCCGATCCCGCTGCCACAACCCTC-GATCTAGT-TCAAA
845 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGATC-AGTCT-GAT
* * * * *
11290659 GTTAAACTGGGAATGAACTCCATATGCCTAAGCCAACCAACG-AA--A-CGA-GCGGGCGGGTGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGGCGGGCGG
* * *
11290719 GCACTACGCTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCTATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* **
11290784 GGCACATCTTCATATTTCT-AAGTGCCAATGCCATTTTTATATCTTGTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
11290848 CCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAA
195 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAA
* *
11290913 ACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCCGCAAACTTGGTAG
260 ACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
11290977 ACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAG-TTAAAAACTCGAAGTGTACAA
324 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTT-AAAACTCGAAGTGTACAA
*
11291041 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * ***
11291106 CTATAAAATCTCAAAGGCTCTTCAAGGGGACATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
11291171 CAATATAAGGGCCAAGAACCAGCACCCTTCACACATCATGTGCGCACACCCCCCCGGCCCCCCGA
518 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACA-CCCCCCGGCCCCCCGA
* * ** * *
11291236 TCATCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGTGATGCTACGGCGATGGTGCCCCAACGA
582 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
* * * * * * *
11291301 AGATAAATGCAGCACCGGTACATGCTCGAGCCCAGCATGTGCTGCCACAACACTCGGTCCGGTCC
647 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
* * *
11291366 CATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
712 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * *
11291431 CCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCTGGGGATCGG
777 CCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
11291496 TC
842 TC
11291498 AGGTTTAGGC
Statistics
Matches: 3895, Mismatches: 478, Indels: 123
0.87 0.11 0.03
Matches are distributed among these distances:
884 2 0.00
885 1 0.00
886 145 0.04
887 96 0.02
888 305 0.08
889 169 0.04
890 10 0.00
891 44 0.01
892 183 0.05
893 309 0.08
894 344 0.09
895 353 0.09
896 16 0.00
897 71 0.02
898 17 0.00
899 127 0.03
900 58 0.01
901 13 0.00
902 191 0.05
903 437 0.11
904 199 0.05
905 1 0.00
906 257 0.07
907 2 0.00
908 3 0.00
909 1 0.00
910 131 0.03
911 234 0.06
912 173 0.04
913 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGCGGGCGGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAA
CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTTAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCCCCGGCCCCCCGATCGT
CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGATCAGTCTGAT
Found at i:11288721 original size:26 final size:26
Alignment explanation
Indices: 11288692--11288744 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11288682 CTGGTCCGAT
* *
11288692 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11288718 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11288744 C
1 C
11288745 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11289627 original size:26 final size:26
Alignment explanation
Indices: 11289588--11289638 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
11289578 GATCCAATCA
11289588 TAGACTGGGAATGAACAACGTATGCT
1 TAGACTGGGAATGAACAACGTATGCT
* * **
11289614 TAGATTGGGTATGAACTCCGTATGC
1 TAGACTGGGAATGAACAACGTATGC
11289639 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACAACGTATGCT
Found at i:11292092 original size:26 final size:26
Alignment explanation
Indices: 11292056--11292108 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11292046 CTAGTCTGAT
11292056 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
11292082 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
11292108 C
1 C
11292109 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Done.