Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 68 of 190
Found at i:11293519 original size:887 final size:892
Alignment explanation
Indices: 11291645--11295104 Score: 4501
Period size: 887 Copynumber: 3.9 Consensus size: 892
11291635 CTTTTAGCAG
* *
11291645 TTTTGGCCGCAAACTTGGTAGACGTGATCCTTGCT-TTTTTGTTGGCATGCACAAAAAAATTCAG
1 TTTTGGCCCCAAACTTGGTAGACATGATCCTTG-TATTTTTGTTGGCATGCACAAAAAAATTCAG
*
11291709 CCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
65 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
11291774 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTTGAG
130 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
11291839 GTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCG
195 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* ** *
11291904 CACA-CCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCAACGATGCT
260 CACACCCCCTCGGCCCCCC-ATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* **
11291967 CCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
324 CCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
11292032 CCGTAAACCTCGGTCTAGTCTGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
389 CCGCAACCCTCGGTCCAGTCCGATCTT-AACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * *
11292097 AACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCTGTCGGCCAGAGGGGCGG
453 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGG
* * * * * * * * *
11292162 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTACGTACTGTCGATCCTGCTACTGTAACCCT
518 GATGCGCAAGCAGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCCATCCTGCTACCGTAACCCT
* * * *
11292227 C-AGTCTGGT-TGATCTTAGACTAGGAATGAACTCCGTGTGCCTAAGCCAACCGACGAAACGAGC
583 CGAGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC
* * * **
11292290 GGGCGGACGGGTGGGGGGCACTACGCCGGCTAGAGAGACAGGATTTGCAAGCCGTGGATCGATAG
648 GGGCGGAC--G-GGCGGG-ACT-----GGCCAGAGAGGCAGGATACGCAAGCCGTGGATCGATAG
* *
11292355 GGTGGTAAGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
704 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* *
11292420 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGCTTTCTATT
769 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGATGACTCGATTTCTATT
* * * * * * ** * *
11292485 TTTCATGATTTT-TGAAAGTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAG
834 TTTCACGATTTTCAG-AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGTAGGAT
* * *
11292544 TTTTGGCCCCAAACTCGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAACAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
11292609 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
66 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
11292674 AATGGCTTCTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGATG
131 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
11292739 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTTCGC
196 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
11292804 ACACCCCC-CAGCCCCCC-T-ATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCT
261 ACACCCCCTCGGCCCCCCATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
**
11292866 GGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCC
326 GGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * *
11292931 ACAACCCTCGGTCCAGTCCGATCTTATACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAA
391 GCAACCCTCGGTCCAGTCCGATCTTA-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
*
11292996 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGTGGGA
455 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGA
* * *
11293061 TGCGCAAGCAGGGGATCGGCCGGGTCCCCCTTTGCATGCTGCCCATCCTACTGCCGTAACCCTCG
520 TGCGCAAGCAGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCCATCCTGCTACCGTAACCCTCG
* * *
11293126 A-TTTGGTCTGGTCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGG
585 AGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGG
* *
11293190 GTGGACGGGCGGG-C-GGCCAGAGAGGC-GGAATACGCAAGCCATGGATCGATAGGGTGGTAGGT
650 GCGGACGGGCGGGACTGGCCAGAGAGGCAGG-ATACGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
11293252 GGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
714 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* ** * *
11293317 ATTGTCCCTTAAGCCTTCGTGTGAAGTTTCATTGCAAGATGACTCAATTTCTATTTTTCACGATT
779 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGATGACTCGATTTCTATTTTTCACGATT
11293382 TTCAGAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGTAGGAT
844 TTCAGAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGTAGGAT
*
11293431 TTTTGGCCCCAAACTTGGTAGTCATGATCCTTGTATTTGTT-TTGGCATGCACAAAAAAATTCAG
1 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT-TTGTTGGCATGCACAAAAAAATTCAG
* *
11293495 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTTAGACACTT
65 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * *
11293560 TAGTAGCTACTCGCAGCAAACTTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAG
130 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
11293625 GTTTGATGAGGAATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCTCACATCATGTGCG
195 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** * * *
11293690 CACACCCCCTCGGCCCCCCTGATTGTCGGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGC
260 CACACCCCCTCGGCCCCCC--ATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * * * * * * *
11293755 TCCAGCAATGGCGCCCCGGCGAAGAAAAATGCAGCACTAGCACAAGCCCTAGCCCAGTATGTTCT
323 TCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * *
11293820 GCCTCAACCCTCGATCTAATCCGATATTAGACTGGGAATGAACTCCGTATGCTTATACTGGGAAT
388 GCCGCAACCCTCGGTCCAGTCCGATCTTA-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * *
11293885 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCGCTCAGCCGGCCAAAAAGGCG
452 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCG
* * ** *
11293950 GGATGCACAAGCAGGGGATCAGCCGGGTCCCCCTCTGCATGCTGCCCATCCTGCCGCCATAACCC
517 GGATGCGCAAGCAGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCCATCCTGCTACCGTAACCC
11294015 TCGA-TCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
582 TCGAGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
* *
11294079 CAGGCGGACGGGTGGACGGGCGGGAACTATGCCGACCAGAGAGGCGGGATATGCAAGCCGTGGAT
647 C--G-GG-C----GGACGGGCGGG-AC--TG--G-CCAGAGAGGCAGGATACGCAAGCCGTGGAT
* * * *
11294144 CGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTACGTGCAAATGCCATTTTTATGG
698 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * *
11294209 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGGAAGA-CACTCGTTT
763 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGATGACTCGATT
* * * * * *
11294273 TTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTGTTTGGTCGTAT
828 TCTATTTTTCACGATTTTCAGAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGTAGGAT
* ** *
11294338 TTTTGGCCCCAAACATGGTAGATGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGC
1 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * * *
11294403 TAAAAACTCGAAGTTTACAAGATTTTGTGAACACTTGAAAATAGTGTGCCCATTTCAGACACTTT
66 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
11294468 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
131 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
11294533 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCACACATCATGTGCGC
196 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
11294598 ACACCCCTCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGCCAGGTTCTTCGACAATGC
261 ACACCCC-CTCGG-CCCCCC-ATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
** ** *
11294663 TCCGGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGATCGAGCCTAGCATGTGCT
323 TCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
11294728 ACCGCAACCC-CTGGTCC-G---G-TC----C--------AA------A--CTTAGACTGGGAAT
388 GCCGCAACCCTC-GGTCCAGTCCGATCTTAACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
11294767 GAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCGACTA-AAGGGGC
452 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAA-GGGC
* * * * * * * *
11294831 TGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAA-C
516 GGGATGCGCAAGCAGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCCATCCTGCTACCGTAACC
** * * * * * * * *
11294895 CTTTAGTTTGGTCCGATCTTAGACTCGGAATGAACTCCATATACCTAAGCCAACTGATGAAACAA
581 CTCGAGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA
* *
11294960 GCGGGCGGGCGGGCGGGCACTACGTTGGCCTGAGAGGCAGGATACGCAAGCCGTGGATCGATAGG
646 GCGGGCGGACGGGCGGG----AC--TGGCCAGAGAGGCAGGATACGCAAGCCGTGGATCGATAGG
*
11295025 GTGGTAGGTGGGATTAGGCACATCTTCATATTTCT--ATGAGCCAATGCCATTTTTATGGCTTGT
705 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT--GCCAATGCCATTTTTATGGCTTGT
11295088 AAATTCATACAATGGTC
768 AAATTCATACAATGGTC
11295105 AGATCTTAGA
Statistics
Matches: 2270, Mismatches: 250, Indels: 107
0.86 0.10 0.04
Matches are distributed among these distances:
872 1 0.00
874 117 0.05
875 1 0.00
877 4 0.00
878 1 0.00
879 2 0.00
880 1 0.00
881 6 0.00
882 171 0.08
884 1 0.00
886 2 0.00
887 445 0.20
888 11 0.00
890 2 0.00
891 1 0.00
892 330 0.15
893 1 0.00
894 1 0.00
895 7 0.00
896 2 0.00
897 272 0.12
898 59 0.03
899 245 0.11
900 23 0.01
902 1 0.00
903 1 0.00
904 1 0.00
905 1 0.00
906 2 0.00
907 310 0.14
908 240 0.11
909 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCTCGGCCCCCCATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
GGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
GCAACCCTCGGTCCAGTCCGATCTTAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGAT
GCGCAAGCAGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCCATCCTGCTACCGTAACCCTCGA
GTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGG
CGGACGGGCGGGACTGGCCAGAGAGGCAGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGATGACTCGATTTCTATTTTTCACGATTTT
CAGAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGTAGGAT
Found at i:11295250 original size:201 final size:196
Alignment explanation
Indices: 11294903--11295301 Score: 512
Period size: 201 Copynumber: 2.0 Consensus size: 196
11294893 ACCTTTAGTT
* * * *
11294903 TGGTCCGATCTTAGACTCGGAATGAACTCCATATACCTAAGCCAACTGATGAAACAAGCGGGCGG
1 TGGTCAGATCTTAGACTCGGAATAAACTCCATATACCTAAGCCAACTGACGAAACAAGCGGGCAG
* ** * *
11294968 GCGGGCGGGCACTACGTTGGCCTGAGAGGCAGGATACGCAAGCCGTGGATCGATAGGGTGGTAGG
66 GCGGGCGGGCACTACGTCGGCCAAAGAGACAGGATACACAAGCCGTGGATCGATAGGGTGGTAGG
** *
11295033 TGGGATTAGGCACATCTTCATATTTCT-ATGAGCCAATGCCATTTTTATGGCTTGTAAATTCATA
131 TGGGATTAGGCACATCTTCATAACTCTAATG-G-CAATACCATTTTTATGGCTTGTAAATTCATA
11295097 CAA
194 CAA
* * * * *
11295100 TGGTCAGATCTTAGATTGGGAATAAACTCCGTATGCCTAAGCCAACTGACGAAATGAACGGCCGG
1 TGGTCAGATCTTAGACTCGGAATAAACTCCATATACCTAAGCCAACTGACGAAA-CAA--G-CGG
* ** *
11295165 GTAGGCGGGCGGGCACTACGTCGGCCAAAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGG
62 GCAGGCGGGCGGGCACTACGTCGGCCAAAGAGACAGGATACACAAGCCGTGGATCGATAGGGTGG
* * *
11295230 TAGTTGGGTTTAGGCACATCTTCATAACTCTACATGGCAATACCATTTTTTTGGCTTGTAAATTC
127 TAGGTGGGATTAGGCACATCTTCATAACTCTA-ATGGCAATACCATTTTTATGGCTTGTAAATTC
11295295 ATACAA
191 ATACAA
11295301 T
1 T
11295302 TGCCCTTAGG
Statistics
Matches: 172, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
197 47 0.27
198 2 0.01
200 1 0.01
201 118 0.69
202 1 0.01
203 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (196 bp):
TGGTCAGATCTTAGACTCGGAATAAACTCCATATACCTAAGCCAACTGACGAAACAAGCGGGCAG
GCGGGCGGGCACTACGTCGGCCAAAGAGACAGGATACACAAGCCGTGGATCGATAGGGTGGTAGG
TGGGATTAGGCACATCTTCATAACTCTAATGGCAATACCATTTTTATGGCTTGTAAATTCATACA
A
Found at i:11295869 original size:23 final size:26
Alignment explanation
Indices: 11295823--11295873 Score: 72
Period size: 23 Copynumber: 2.1 Consensus size: 26
11295813 CCGGTCCAAT
11295823 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11295849 CTTAGA-T-GGAA-GAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11295872 CT
1 CT
11295874 AGTAACCACT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 13 0.54
24 4 0.17
25 1 0.04
26 6 0.25
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11296622 original size:26 final size:26
Alignment explanation
Indices: 11296593--11296645 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11296583 CCGGTCCGAT
11296593 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11296619 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11296645 C
1 C
11296646 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11297524 original size:26 final size:26
Alignment explanation
Indices: 11297495--11297547 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11297485 CTGGTCCGAT
*
11297495 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11297521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11297547 C
1 C
11297548 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11297814 original size:903 final size:900
Alignment explanation
Indices: 11295983--11297887 Score: 2688
Period size: 903 Copynumber: 2.1 Consensus size: 900
11295973 GATGCCAAGT
* * *
11295983 GTGGATCGATA--GAGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
1 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTT
*
11296046 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGATGAC
66 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
* ***
11296111 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGGATTTTTTAAAATATTTCAG
131 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAACATTTTTTAAAATATTTCAG
* *** *
11296176 AAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGTTGGTATGCACAAAAA
196 AAGGAGTTTTGGAAACAAACTTGGTAGACGTGATCCTTGTATTTTTGTGTTGGCATGCACAAAAA
*
11296241 AATTCAGCTAAAAACTCAAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGCG
261 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGCG
* *
11296306 GGACACTTTAATGGCTATGGCAGCAAAGCTATAAAATCTCAAATGCTCTTTAAGGGGTGTGATTC
326 AGACACTTTAATGGCTATGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTGTGATTC
* * *
11296371 TCAAGGTTTGATGAGGATAGGGGGCCAAGATAAGGGCCAAGTACCAGCACCATCGTACATCTTGT
391 TCAAGGTTTGATGAGGATAGGGGGCCAAGATAAGGGCCAAGCACCAGCACCATCGCACATCATGT
* * *
11296436 TACCACACCCCCCGGCCCCCTCGATCTCCGGAACCCCAATCCACCGGGTCAAGTTCTCCGGCGAT
456 TACCACACCCCCCGACCCCCCCGATCTCCGGAACCCCAATCCACCGGGTCAAGTTCTCCGACGAT
* * * *
11296501 GCTCCGACAATGGTGCCCGGATGAAGAAAAATGCTGCTCCAACACATGCTCGAGCCCAGCATGTG
521 GCTCCGACAATGGTCCCCGGATAAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTG
* *
11296566 CTATCAAAACCGTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
586 CTACCAAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
11296631 ATGAACTTCGTATGCCTAAGTCAACTCACGAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGC
651 ATGAACTCCGTATGCCTAAGTCAACCCACGAACGAGCGTGCGGGTGCTCAACCAGCCAGAGGGGC
* ** * *
11296696 GGGATGTGCAAGCCGGGGATCGATCAGGTCCCACTTTGCATCCTACCGATCCTGCTGCCACAACC
716 AGGATGCACAAGCCGAGGATCGATCAGGTCCCACTTTACATCCTACCGATCCTGCTGCCACAACC
**
11296761 CTTGGTCCTGTCTAATCCTAGACTAGGAACAAAATCCATATGCCTAAGCCAACCGACGAAACGAG
781 CTCAGTCCTGTCTAATCCTAGACTAGGAACAAAATCCATATGCCTAAGCCAACCGACGAAACGAG
* * * * ** *
11296826 CGGGCGGGCGATTGAGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCATGCC
846 CGGACGGACGAGTGAGCAGGCACTACCCCGGCCAGAGAGACGGGATACGCAAGCC
*
11296881 GTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTT
1 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTT
* *
11296946 TTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGAC
66 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
** * * * **
11297011 TTGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AACATTTTGTT-AATTTTTTTG
131 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAACATTTT-TTAAAATATTTCA
11297074 GAAGGAGTTTTGGAAACAAACTTGGTAGACGTGATCCTTGTA-TTTT-TGTTGGCATGCACAAAA
195 GAAGGAGTTTTGGAAACAAACTTGGTAGACGTGATCCTTGTATTTTTGTGTTGGCATGCACAAAA
*
11297137 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT-AAAAAAGTGTCCCCATTTC
260 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGC
*
11297201 -AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
325 GAGACACTTTAATGGCTA-TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
** * *
11297265 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATTGCACA
388 -TTCTCAAGGTTTGATGA-GGATAGGGGGCCAAGATAAGGGCCAAGCACCAGCA-CCATCGCACA
* * ** * *
11297330 TCATG-TGCGCACACTCCCCCCGACCCCCCCGATCGT-TGGAACCCCAATGCCGTC-GGTTAGGT
450 TCATGTTAC-CACA--CCCCCCGACCCCCCCGATC-TCCGGAACCCCAAT-CCACCGGGTCAAGT
* *
11297392 TCTCCGACGATGCTCCGACGATGGTCCCCTGG-TAAAGAAAAATGCGGCACCAACACTTGGCT-G
510 TCTCCGACGATGCTCCGACAATGGTCCCC-GGATAAAGAAAAATGCGGCACCAACACAT-GCTCG
** * *
11297455 AGCCCAGCATGTGC-AGCCGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTA
573 AGCCCAGCATGTGCTA-CCAAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
11297519 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
637 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AACGAGCGTGCGGGTGCTCA
* * * * **
11297584 ACCGGCCAGAGGGGCAGGATGCACAAGCCGAGGATCGGTCAGGTCCCCCTTTACATGCTGTCGAT
701 ACCAGCCAGAGGGGCAGGATGCACAAGCCGAGGATCGATCAGGTCCCACTTTACATCCTACCGAT
* ** * * * * ** * *
11297649 CGTGCTGCTGCAACCCTCAGT-CTGGTCTGATCTTAGAGTGGGAATGAACTCCGTATGCCTAAGC
766 CCTGCTGCCACAACCCTCAGTCCT-GTCTAATCCTAGACTAGGAACAAAATCCATATGCCTAAGC
* * * *
11297713 CAACCGACGAAACGAGTGGACGGACGGGTGGGCAGGCACTACCCCGGCCAGAGAGACGGGATGCG
830 CAACCGACGAAACGAGCGGACGGACGAGTGAGCAGGCACTACCCCGGCCAGAGAGACGGGATACG
11297778 CAAGCC
895 CAAGCC
* * *
11297784 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTACAAATGCCATTT
1 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTT
11297849 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
11297888 GCGTGCCAAT
Statistics
Matches: 890, Mismatches: 99, Indels: 31
0.87 0.10 0.03
Matches are distributed among these distances:
895 16 0.02
896 52 0.06
897 69 0.08
898 29 0.03
899 84 0.09
900 167 0.19
901 1 0.00
902 183 0.21
903 289 0.32
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (900 bp):
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAACATTTTTTAAAATATTTCAG
AAGGAGTTTTGGAAACAAACTTGGTAGACGTGATCCTTGTATTTTTGTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGCG
AGACACTTTAATGGCTATGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTGTGATTC
TCAAGGTTTGATGAGGATAGGGGGCCAAGATAAGGGCCAAGCACCAGCACCATCGCACATCATGT
TACCACACCCCCCGACCCCCCCGATCTCCGGAACCCCAATCCACCGGGTCAAGTTCTCCGACGAT
GCTCCGACAATGGTCCCCGGATAAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTG
CTACCAAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAACGAGCGTGCGGGTGCTCAACCAGCCAGAGGGGC
AGGATGCACAAGCCGAGGATCGATCAGGTCCCACTTTACATCCTACCGATCCTGCTGCCACAACC
CTCAGTCCTGTCTAATCCTAGACTAGGAACAAAATCCATATGCCTAAGCCAACCGACGAAACGAG
CGGACGGACGAGTGAGCAGGCACTACCCCGGCCAGAGAGACGGGATACGCAAGCC
Found at i:11298308 original size:26 final size:26
Alignment explanation
Indices: 11298272--11298322 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11298262 TTGACTTAGG
*
11298272 CATATGGAGTTCATTCCCAATCTAAA
1 CATACGGAGTTCATTCCCAATCTAAA
*
11298298 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAATCTAA
11298323 GATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAA
Found at i:11300056 original size:26 final size:26
Alignment explanation
Indices: 11300020--11300072 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11300010 GTTGACTTAG
*
11300020 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
11300046 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11300072 G
1 G
11300073 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11302664 original size:26 final size:25
Alignment explanation
Indices: 11302626--11302676 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
11302616 GTTGACTTAG
*
11302626 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCA-TCCCAGTCTAA
**
11302652 GCATACGGTGTTCATCCCAGTCTAA
1 GCATACGAAGTTCATCCCAGTCTAA
11302677 TATCGGATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCAGTCTAA
Found at i:11303578 original size:25 final size:26
Alignment explanation
Indices: 11303528--11303578 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11303518 GTTGACTTAG
*
11303528 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11303554 GCATACGGTGTTCA-CCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11303579 TATCGGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11304453 original size:26 final size:26
Alignment explanation
Indices: 11304423--11304473 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11304413 TGACTTAGGC
* *
11304423 ATACGAAGTTCATTCGCAGTCTAAGT
1 ATACGAAGTTCATCCCCAGTCTAAGT
*
11304449 ATACGGAGTTCATCCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
11304474 ATCAGATCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGT
Found at i:11304897 original size:897 final size:897
Alignment explanation
Indices: 11301774--11306289 Score: 5939
Period size: 902 Copynumber: 5.1 Consensus size: 897
11301764 GACTTAGGTG
* * * * *
11301774 TACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGTTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
* *
11301839 -AGGCATGTGTTGGTGCCACATTTTTCTTCATCG-GG-----TCA-C--A--ATCGTCGGAGAAC
66 GA-GCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGTCGGAGAAC
* * *
11301892 CTGACCGACGGCATTGGGGTTCC-AGCAATC-AGGGG--GGTCGGGGGGTGTGCGCACATGATGT
130 CTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGTGGGGGGGTGTGCGCACATGATGT
*
11301953 GCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
11302018 CACCTCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
11302083 TGGGGACACCTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
11302148 GTGCATGCCAAAAAAAATACAGGGATCATGTCTACCAAGTTTGGGGTCAAAAAC-CCTTCCGAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCCGAAA
* * * * *
11302212 AAATTTTAAAAAATCTCGAACCGTAAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
453 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGT
11302277 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
11302342 GCTTTGGCACGTAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
11302407 GCGCATCCCGTCTCTCTGGC-CGGCGTAGT----GCTCGCCCGCTCGTTTCGTCGGTTGGCTTAG
647 GCGCATCCCGTCTCT-TTGCTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * * *
11302467 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGAACTGAGGGTTGTTG-TAGCAGGGTCGAC
711 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTG-CGATAGCAGGATTGGC
* * * *
11302531 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCTTTTGGCCGATTGAGCA
775 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG-GTGAGCA
* *
11302596 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCTCAGTCTAAGCA
839 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
* * * * * * *
11302655 TACGGTGTTCA-TCCCAGTCTAATATCGGATTGGACCAAGGGTTACGGCAGCAAATGCTGGGCTT
1 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * * *
11302719 GGGCATGTTTTGGTGTCGCTTTTTTCTTCGTCGGGGCACCATC-GCTGGTGCATCG-CTGGAGAA
66 GAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATC-GGAGCATCGTC-GGAGAA
* * * *
11302782 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC---AGGGGAGTGTGTGCACAGGATGT
129 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGTGGGGGGGTGTGCGCACATGATGT
* *
11302844 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCG
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
11302909 CACCCTCTTAAAGAGCAATTCAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
11302974 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGTATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
11303039 GTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCC-AAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * *
11303103 AAATTTAAAAAAGTCCTGAACCGTAAAAAGTTTTAAAAATCGTGACAAATAGAAAACGTGTCGTC
454 AATTTTAAAAAA-TCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11303168 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
11303233 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * *
11303298 CGCATCCCGTCTCTCTGGCTGACTTTGTGC-CCGCTCGCCCGCCCACCCGCTTGTTTCATCGGTT
648 CGCATCCCGTCTCT-T---TG-C-TCG-GCGTAG-T-GCCCGCCCGCCCGCTCGTTTCGTCGGTT
* *
11303362 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGTGGTAGCAGG
704 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGATAGCAGG
* * * * * *
11303427 ATCGTCAGCACGTAGAGGTGGACCCGACCGATCCCCGGCTTGCACAT-CTCGCCCTTCTGGCCGA
769 ATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCG-
* * * *
11303491 TTGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
832 GTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
11303556 A
897 A
* * * * * * * * *
11303557 TACGGTGTTCA-CCCCAGTCTAATATCGGACCGAACCGAGGGTTGTGGTAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
* * *
11303621 GAGCATGTGTTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCG-CGAAGAACC
66 GAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGTCGGAGAACC
* *
11303685 TGACCGACGGCATTGTGGTTCCGACAATCGGGGGGGCC---GGGGGGGTGTGCGCACATGATGTG
131 TGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGTGGGGGGGTGTGCGCACATGATGTG
* * *
11303747 CAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
11303812 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11303877 GGGGACACATTTTTT-AAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
11303941 GTGCATGCCAAAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
11304006 AATTTTAAAAAAATCAC-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
454 AATTTT-AAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
**
11304070 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
11304135 CATTTGCATGCAGAAATATGAAGATCTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
11304200 TGCATCCCGTCTCTTTGCTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTACGC
648 CGCATCCCGTCTCTTTGCTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* **
11304265 ATACGGAGTTCATTCCCAGTCTAGGATCAGACCAAACTGAGGGTTGCGATAGCAGGATTGGTGGC
713 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGATAGCAGGATTGGCAGC
* * *
11304330 ACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGTGAGCCCCCG
778 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTGAGCACCCG
* * *
11304395 CACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCGCAGTCTAAGTA
843 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
* * ** *
11304450 TACGGAGTTCATCCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * * *
11304515 GAGCATGTGTTGGTGCTGTATTTCTCTTCGTCGGGGCATCGTCATCGGAGCATCGTCAGAGAACC
66 GAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGTCGGAGAACC
* * *
11304580 TGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGGGGTGTGCACACAT-ATGTT
131 TGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGTGGGGGGGTGTGCGCACATGATGTG
*
11304644 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
11304709 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAC
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11304774 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCAAGCTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * **
11304839 TGCATTCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
11304904 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
11304969 GCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
11305034 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
11305099 CCTCCCG--TC--T-CT---C----T-----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
650 CATCCCGTCTCTTTGCTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * ** ** *
11305147 ATGGAGTTCATTCCCTA-TCTAAGATTGGACCAGACCAAGGGTTGCGGCAACAGGATTGGCAGCA
715 ACGGAGTTCATTCCC-AGTCTAAGATCAGACCAAACTGAGGGTTGCGATAGCAGGATTGGCAGCA
* * * *
11305211 TGTAAAAGGGGACCCGACCGATCCCCGGCTTGCGCATCC--CACCCTC-GGCCGGCTGAGCACCC
779 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGC-CCCTCTGGCCGG-TGAGCACCC
* * * *
11305273 GCACGCTCATTTCGT-GGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAAGCG
842 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
* * * * * * * *
11305328 TACGAAATTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACAGTAGCACATGCTGGGCTT
1 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
* * *
11305393 GAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCATCATCGTCGAAGCATCGTCGGAGAACC
66 GAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGTCGGAGAACC
* * * ** * * *
11305458 TAACCGGCGACATTGGGGTTCCGGTGATC---GGGCGGGTCGGGGGGTTTGCGCACATGATGTGC
131 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGTGGGGGGGTGTGCGCACATGATGTGC
*
11305520 GATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
11305585 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
11305650 GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGATTTTTTAGCTGAATTTTTTTAT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
11305715 GCATCCCAACAAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAACTCCTT-CGAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAA
** * *
11305779 ATTTTAAAAAATCCCAAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTT
455 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
11305844 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * *
11305909 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
11305974 CATCCCGTCTCTCTGGTCGGAGTAGTGCCCGCCCGCCCGCCCTGTTTCATCGGTTGGCTTAGGCA
650 CATCCCGTCTCTTTGCTCGGCGTAGTGCCCGCCCGCCCGCTC-GTTTCGTCGGTTGGCTTAGGCA
* * * *** * * * *
11306039 TACGGAGTTCATTCCCAGTGTATGAT-TGAACTGGA-TCAACGGTTACGATAGCAGGATCGGCAG
714 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAAACT-GAGGGTTGCGATAGCAGGATTGGCAG
* * * * * ** **
11306102 CATGCAGAGGGGGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGTTGGCTGAGTGCC
777 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG-TGAGCACC
*
11306167 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAA-TTCATTCCCAGTCTAAGCA
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGCA
** * *
11306224 TATAGATTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
11306289 G
66 G
11306290 GGCACATGCT
Statistics
Matches: 3202, Mismatches: 353, Indels: 145
0.87 0.10 0.04
Matches are distributed among these distances:
874 24 0.01
875 432 0.13
877 2 0.00
878 176 0.05
879 27 0.01
880 183 0.06
881 13 0.00
885 1 0.00
886 3 0.00
887 1 0.00
889 1 0.00
890 187 0.06
891 306 0.10
892 19 0.01
893 173 0.05
894 231 0.07
895 77 0.02
896 109 0.03
897 422 0.13
898 19 0.01
901 39 0.01
902 733 0.23
903 18 0.01
904 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
GAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGTCGGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGTGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTTTGCTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGATAGCAGGATTGGCAGCACG
CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTGAGCACCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
Found at i:11306527 original size:26 final size:26
Alignment explanation
Indices: 11306491--11306543 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11306481 GTGGACTTAG
*
11306491 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
11306517 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
11306543 G
1 G
11306544 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:11306564 original size:296 final size:298
Alignment explanation
Indices: 11306007--11306599 Score: 807
Period size: 296 Copynumber: 2.0 Consensus size: 298
11305997 AGTGCCCGCC
* * * * *
11306007 CGCCCGCCCTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTATGATTGAACTG
1 CGCCCGCCCTGTTCCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATAGAACCG
* * *
11306072 GATCAACGGTTACGATAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTGT
66 GACCAACGGTTACGACAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTGT
* ** * ** *
11306137 GCATCCCGCCCCTCTGGTTGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
131 GCAGCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTGGACTTAGGCATACG
* * * **
11306202 GAATTCATTCCCAGTCTAAGCATATAGATTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGGT
196 GAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGACCAAGGGT
11306267 TGCGGCAGCACATGCTGGGCTCGGGCACATGCTGGTGT
261 TGCGGCAGCACATGCTGGGCTCGGGCACATGCTGGTGT
* **
11306305 CGCCCGCTC-GTTCCATCAGTTGGCTTAGGCATACGTTGTTCATTCCCAGTGTAAGATCAG-ACC
1 CGCCCGCCCTGTTCCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGAT-AGAACC
* * * * * * *
11306368 GGACCGATGGTTGCGGCAGCAGGATTGGCAGCACT-TAGAGGGGGA-CCGACCGATCCCCGGCTT
65 GGACCAACGGTTACGACAGCAGGATCGGCAGCA-TGCAGAGGGGGACCCGACCGATCCCCGACTT
*
11306431 GTGCAGCCCGCCCCTCTGGCCGACTGAGCACTCGCACGCTCATTTCGTGGGTGGACTTAGGCATA
129 GTGCAGCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTGGACTTAGGCATA
* * * *
11306496 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAGG
194 CGGAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGACCAAGG
**
11306561 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
259 GTTGCGGCAGCACATGCTGGGCTCGGGCACATGCTGGTG
11306600 CCGTATTTTT
Statistics
Matches: 256, Mismatches: 37, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
296 166 0.65
297 80 0.31
298 10 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (298 bp):
CGCCCGCCCTGTTCCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATAGAACCG
GACCAACGGTTACGACAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTGT
GCAGCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTGGACTTAGGCATACG
GAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGACCAAGGGT
TGCGGCAGCACATGCTGGGCTCGGGCACATGCTGGTGT
Found at i:11308323 original size:26 final size:26
Alignment explanation
Indices: 11308287--11308338 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11308277 GTTGACTTAG
11308287 GCATATAGAGTTCATTCCCAGGCTAA
1 GCATATAGAGTTCATTCCCAGGCTAA
* *
11308313 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGGCTAA
11308339 CATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGGCTAA
Found at i:11308619 original size:26 final size:26
Alignment explanation
Indices: 11308583--11308635 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11308573 GTTGACTTAG
11308583 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11308609 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11308635 G
1 G
11308636 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11308647 original size:296 final size:297
Alignment explanation
Indices: 11308113--11308695 Score: 839
Period size: 296 Copynumber: 2.0 Consensus size: 297
11308103 CCACTCGTTT
** *
11308113 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCA
1 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACA
* * * *
11308178 GTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCACCCCTC
66 GCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCACCCCTC
* ** * *
11308243 TGGCCGGTTGAGCACCCACGTGCTCGTTTCGTATGTTGACTTAGGCATATAGAGTTCATTCCCAG
131 TGGCCGGCTGAGCACCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAG
**
11308308 GCTAAGCATATGGAGTTCATTCCCAGTCTAACATCAGACCGGACCAAGGGTTGCGGTAGCACATG
196 GCTAAGCATATGGAGTTCATTCCCAGTCTAACATCAGACCGGACCAAGGGTTGCGACAGCACATG
11308373 CTGGGCTCG-GCATGTGCTGGTGCCGCCCGCTCATTC
261 CTGGGCTCGAGCATGTGCTGGTGCCGCCCGCTCATTC
** * * * **
11308409 CGTCGGTTGGCTTAGGCATACGTTGTTCATTCCCAGTGTAAGATCAGATCGGACCGATGGTTATG
1 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACA
* ** *
11308474 GCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGA-CTGATCCCCTTCTTGCGCATCCCGA-CCC
66 GCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCACATCCC-ACCCC
* * * *
11308537 TCTGGCCGGCTGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
129 TCTGGCCGGCTGAGCACCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCC
* * *
11308602 AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACA
194 AGGCTAAGCATATGGAGTTCATTCCCAGTCTAACATCAGACCGGACCAAGGGTTGCGACAGCACA
11308667 TGCTGGGCTCGAGCATGTGCTGGTGCCGC
259 TGCTGGGCTCGAGCATGTGCTGGTGCCGC
11308696 TTTTTTCTAC
Statistics
Matches: 252, Mismatches: 32, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
295 1 0.00
296 233 0.92
297 18 0.07
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (297 bp):
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACA
GCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCACCCCTC
TGGCCGGCTGAGCACCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAG
GCTAAGCATATGGAGTTCATTCCCAGTCTAACATCAGACCGGACCAAGGGTTGCGACAGCACATG
CTGGGCTCGAGCATGTGCTGGTGCCGCCCGCTCATTC
Found at i:11309482 original size:26 final size:26
Alignment explanation
Indices: 11309452--11309504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11309442 GTTAACTTAG
*
11309452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11309478 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11309504 G
1 G
11309505 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11310394 original size:25 final size:26
Alignment explanation
Indices: 11310346--11310394 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11310336 GGTTGACTAG
11310346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11310372 GCATACGGAGTTC-TTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
11310395 GAGATCGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11311274 original size:25 final size:26
Alignment explanation
Indices: 11311246--11311297 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
11311236 GTTGACTTAG
* *
11311246 GCATACGGAGTTTAT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11311271 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11311297 G
1 G
11311298 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11312165 original size:26 final size:26
Alignment explanation
Indices: 11312136--11312188 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11312126 GTTGACTTAG
*
11312136 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
*
11312162 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
11312188 G
1 G
11312189 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:11312473 original size:901 final size:897
Alignment explanation
Indices: 11308818--11315322 Score: 7493
Period size: 897 Copynumber: 7.3 Consensus size: 897
11308808 GGTGCTGGTA
**
11308818 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTTCAGTAGCC
1 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
11308883 ATTAAACTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACACAATATTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * *
11308948 TTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAGGGATCACGTATACCAAGTTTAGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
11309013 AAAATCCATT-TGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
196 AAAATCC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* ** * *
11309077 TAGAAAACGAGTCGTTTTGCCATGAAACTTCGTGTGAAGGCTTAAGGGACCATTATACGAATTTA
260 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
11309142 CGAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
325 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
11309207 ATCTATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCTGCCTA
390 ATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGGCGTAGTGCCCGCCCGCCCGCCT--C-G
* * *
11309272 CTCATTTCATTGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATT-GACCAGACTGAG
451 CTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACTGAG
** * * * *
11309336 GGTTGCGGTAGCAAGATCGACAGCACGTAGAGGTGGACCCAGTCGATCCCTGGCTTGTGCATCCC
516 GGTTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCC
* * *
11309401 GCCCCTCTGGTCGGCTGAGCGCCCGCACTCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCA
581 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * ** *
11309466 TTCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAGACTGAGGG-T-TACGT
646 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TGGACCGAGGGTTGTA-G-
* * * * ** * *
11309529 CAGCACATGCTGGGCTTGAGCTTGTGCTGGTGCCGCATTTTTCTT-TGTCGGGGCACGATCGCCG
708 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAATTTTCTTCACT-GGGGCACCATAGCCG
* * * * * * *
11309593 GAGCGTCGCCAGAGAACCTGACCGACGGCATTAGGGCTCCGACGATCGGGGGGCCGAGGGGTGTG
772 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTG
11309658 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
837 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
11309719 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCA
1 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
11309784 ATTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
11309849 TTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC-
131 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
11309913 AAATTCCTTCCAAAAAAATTTTAAAAAATTCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
196 AAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * * * *
11309978 AAAAAATGAGTCATCTTACCATGAAACTTCACGTGAAGG--T-CGGGACCATTGTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
***
11310040 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
11310105 TCGATCCACGACTTGTGCATCCCGACTCTCTGGTC-GCATAATGCCCGCCCG-CCGCCCGTCCGC
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGGCGTAGTGCCCGCCCGCCCG-CC-T-CGC
* * * * * ***
11310168 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGAGG
452 TCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACTGAGG
* * * * *
11310233 GTTGCAGTA-A-CAAGATCGACAGCATGCAGA-GGGGACCCGATCGATCCCCGGCTTGCGCATCC
517 GTTGC-G-ACAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCC
* *
11310295 CGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGAC-TAGGCATACGGAGTTC
580 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * *
11310359 ATTCCCAGTCTAAGCATACGGAGTTC-TTCCCAGTCTGAGATCGGACCGGACCGAGGGTTGCAGC
645 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TGGACCGAGGGTTGTAGC
* * * * * * ** * * **
11310423 AGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTGTTCGCCAGGGCACCATCGTCAAA
709 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAATTTTCTTCACTGGGGCACCATAGCCGGA
* * *
11310488 GAATCACCGGAGAACCTGACCGGCGGCATT-GGGTT-CGGCGGATCTGGGGGCCGGGGGGGTGTG
774 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGC-GATCGGGGGGCC-GGGGGGTGTG
*
11310551 CGCACATGATGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATC
837 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
11310611 AAACCTTC-AGAACTTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAG
1 AAACC-TCAAGAAC-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
11310675 CCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAAATCTCGTACACTTCGAA
64 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCG-A
* * **
11310739 ATTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATTCAGTGTCTATGAAGTTTG
127 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA-TCA-CGTCTACCAAGTTTG
* * ** * * *
11310803 GGGCCAAAACTCTTTGTG-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-TAAAATCGTG
190 GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
* * *
11310866 AAAAATAGGAAATGAGTCGTTCTTGCCATGAAACTTCACGTGAAGGGCTTAAGGGACCACTTGTT
255 AAAAATAGAAAACGAGTCG-TCTTGCCATGAAACTTCACGTGAA-GGCTTAAGGGACCA-TTGTA
* * *
11310931 TGAATTTACAAGCCATAAAAATGGCATTGGTATGCTA-AAATTTG-AGATGTGGCTAAAACCCAC
317 TGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAAATATGAAGATGTGCCT-AAACCCAC
* * *
11310994 CTACCACCCTATCGATCCACGGCTTGCACATCTCGTCTCT-TGGCCGACGTAAGTGCCCG-CCGC
380 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGGCGT-AGTGCCCGCCCGC
* * * * *
11311057 TCGCACCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACT---C
443 CCGC-CTCGCTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAC
* * * * * * * *
11311119 CAAGACAGCA-GGTT---ACAGGTAGCAGCGACAGCACGCCATTAAGGTGACCCGGTCGAT-CCC
507 CAA-ACTG-AGGGTTGCGACA-GCAGGATCGACAGCACG-TA-GAGGGGGACCCGGTCGATCCCC
* * * *
11311179 GGCTT-TACGCATCCCG-CCCTCTGGCAGACTGAGTGCCC-CACGACAATCGTTTCGTGGGTTGA
567 GGCTTGT--GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG-C--TCGTTTCATGGGTTGA
* * *
11311241 CTTAGGCATACGGAGTTTATT-CCAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATCAGAT
627 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
* * * * * **
11311305 CGA-CGAGGGTTG-CGGAGCACATGCCGGGCTC-A-CATGTGCT-GTG-CGC-ATTTT-TTGTC-
692 GGACCGAGGGTTGTAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAATTTTCTTCACT
* * * * * *
11311361 GAGGGCACCAT-G-CGGAGCATCGTCGGAGCAAACTGACCGGTGGTATTGGGGTTCAGTCGATCG
757 G-GGGCACCATAGCCGGAGCATCGCCGGAG-AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-
* *
11311424 GGGGGGCC-GGGCG-GTGCGCACATTGATGTGTGATGGGCGTGCTGGTACTTGGCCCTTTATATT
819 GGGGGGCCGGGGGGTGTGCGCACA-TGATGTGCGAT-GG-GTGCTGGTACTTGGCCC-TTATATT
*
11311487 GG-CCCCTATCCCTCTTC
880 GGCCCCCTATCCCTCATC
*
11311504 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
1 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
11311569 ATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
11311634 CTAGCTGAATTTTTTTGTGCATGCCAACAAGAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** * *
11311699 AAAATCTTTTTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCCAAAATCATGAAAAAT
196 AAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * *
11311764 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAAGGACCATTGTATGATTTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
11311829 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
11311894 TCGATCCACGACTTGCGCAGCCCGTCTCTC-ACCGGCATAGTGCCCGCTCGCCCGCCCTCTGCTC
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCGGCGTAGTGCCCGCCCGCCCG-CCTC-GCTC
* * * *
11311958 ATTTCATTGGTTCGCTTAGGCATACGGAGTTCATTGCTAGTCTAACATTAGACCAAAC-GAAGGG
454 ATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACTG-AGGG
* * ** * * *
11312022 TTGCGACAGTAGGATTGGTAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCGTCCCAC
518 TTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGC
* * * * * *
11312087 CCCTCTGGCCAGTTGAACGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
583 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * *
11312152 CCCAGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATAGGACCGAGGGTTGTAACAGC
648 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-GGACCGAGGGTTGTAGCAGC
* * * *
11312217 ACATGCTAGGCTCAAGCATGTGCTGGGGCCACAATTTTCCTCACTGGGGCACCATAGCCGGAGCA
712 ACATGCTGGGCTCGAGCATGTGCTGGTGCCACAATTTTCTTCACTGGGGCACCATAGCCGGAGCA
* * *
11312282 TCGTCGGAGAACCTGATCGGCAGCATTGGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGC
777 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGCC-GGGGGGTGTGCGC
* * * *
11312347 CCATGATGTGTGATGGGTGCTGGTACATGGCCCTTATATTAGCCCCCTATCCCTCATC
840 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
11312405 AAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCC
1 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
11312470 ATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCATAAAATCTTGTACACTTTGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * *
11312535 TTGGCTGAATTGTTTTGTGCAAGCCAACAAAAATACAAAGATCATGTCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
11312600 AAACTCCTTCCAAAAAAATTTTTAAAAAATCTCGAACCACAAAAAGTTTTAAAAATCGTGAAAAA
196 AAAATCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
*
11312665 TAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTA
260 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** *
11312730 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTATCTAAACCCACCTGCCACCCT
325 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** * * *
11312795 ATCGATCCACGGCTTGTGCATCCCGTCTCTCTTATCGACGTAGTGCCCGTCTGCCCG-CT---T-
390 ATCGATCCACGGCTTGCGCATCCCGTCTCTC-TGCCGGCGTAGTGCCCGCCCGCCCGCCTCGCTC
* * *
11312855 GTTTC-TTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCT-AGG
454 ATTTCATT-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAA-CTGAGG
* ** * * ** * ** * * **
11312918 GTTACGATGGCATGATTGGTAGCACGCAGAGGGGGACCCGACCAATCCCTGGCTTGCACATCCCG
517 GTTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCG
* * * *
11312983 CCCCTCTTGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCAT
582 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
11313048 TCCCAGTCTCAGCATACGGAGTTCATTCCCAATCTAAGATTGGACTGGACTGAGGGTTGCAGCAG
647 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TGGACCGAGGGTTGTAGCAG
* * * * *
11313113 CACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTC-GTCGGGGCACCA-ACGCCAGA
711 CACATGCTGGGCTCGAGCATGTGCTGGTGCCACAATTTTCTTCACT-GGGGCACCATA-GCCGGA
* * * * *
11313176 GCATCGTCAGAGAACCTAACCGGCGACATTGGGGTTCCGGCGATC-----G--GGGGGGTGTGGG
774 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCG
*
11313234 CACATGATGTGCGATGGGTGCTGGTACTTGG-CCTCTATATTGGCCCCCTATCCTTCATC
839 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCT-TATATTGGCCCCCTATCCCTCATC
* * * * *
11313293 AAACCTCAAGAACTCACACCCCCTTGAAGACCACTTGAGACTTTATAGGTTTGCTGCCAGTAGCC
1 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
11313358 ATTAAAGTGTCTGAAATGAGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
11313423 TTTGCTGAATTTTTTTGTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * **
11313488 AAACTCTTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAAT
196 AAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * *
11313553 AGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAA
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * *
11313618 AAGGCATAAAAATGGCATTGGCATGCAGAAATATGAGGATGTACCTAAACCCACCTATCATCCTA
326 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
11313683 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG-CTCG----
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGGCGTAGTGCCCGCCCGCCCGCCTCGCTCA
* * ** * * * *
11313739 TTTCGTCGGTTCTCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
455 TTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACTGAGGGTT
** * * * * * *
11313804 GCGGTAGCAGGATTGACAGCACATAGAGGGGGACCCGGTTGAACCACGGCTTGCT-CAACCCGCC
520 GCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTG-TGCATCCCGCC
* ** *
11313868 CCTCTGGCCGGTTGAGCAACCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
584 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * * *
11313933 CCAATTTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCCAGGGTTGT-GACAGC
649 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-GGACCGAGGGTTGTAG-CAGC
* * * * * *
11313997 AAATACTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCAGC-GAGGCACCATCA-CCGGAG
712 ACATGCTGGGCTCGAGCATGTGCTGGTGCCACAATTTTCTTCA-CTGGGGCACCAT-AGCCGGAG
* * * * * * * *
11314060 CATCGCCGGAAAACCTGAGCGACGGTATTGAGGTTCTGACGAACGGGGGGGCCGGGGGGTGTGCG
775 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCG
*
11314125 TACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
839 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
11314184 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-GGTTTTGCTGTCAGTAGT
1 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGC
* *
11314248 CGTTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTT
65 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
11314312 TTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGCCC
130 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
11314376 AAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAAGCGCAAAAAGTTTCAAAAATCGTGAAAAA
195 AAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
*
11314441 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTA
260 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
**
11314506 C-AGAAAGTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
325 CAAGCCA-TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
11314570 TATCGATCCACAGCTTGCGCATCCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCC-CGC
389 TATCGATCCACGGCTTGCGCAT-CCCGTCTCTCT-GCCGGCGTAGTGCCCGCCCGCCCGCCTCGC
* **
11314634 TCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGG
452 TCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACTGAGG
* * ** ** * * * **
11314699 GTTGCGGCAGTAGGATCGGTAGCACGTAGAGGGGGACTTGGCCGATCCCCAGCTTGAGCATCCTA
517 GTTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCG
*
11314764 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
582 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
***
11314829 TCCCAGTCT-A--AT----AG--------C-G-----GATC----GGACCGAGGGTTACGGCAGC
647 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGGACCGAGGGTTGTAGCAGC
* * * * * * * * *
11314869 ATATGCTGGGCTCGAGCATTTGCCGGTGTCATATTTTTCTTCACCGTGTCACCATCA-CCGGAGC
712 ACATGCTGGGCTCGAGCATGTGCTGGTGCCACAATTTTCTTCACTGGGGCACCAT-AGCCGGAGC
* * * * * * *
11314933 ATCGTCGGAGAACGTGACAGGCGACATTGGGGTTCCGGTGATCGGGGGGGTCAGGGGTGTGTGCG
776 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGG-CCGGGGGGTGTGCG
*
11314998 CACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
839 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
** * *
11315057 AAACCTTGAGAACTCACACTCCATTACAGAGCATTTGAGATGGGGACACTCCATTAAAGCCCTTA
1 AAACCTCAAGAACTCACAC-CC----C----C--TT-A-A-AGAG-CA-T---TT---G-----A
* *
11315122 TATTGGCCCCCTATACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
39 GATT-------T-TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
11315187 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
96 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * *
11315252 AAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAGAAAATC
161 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
*
11315317 CTGAAC
226 CCGAAC
11315323 ATAGGGGAAC
Statistics
Matches: 4833, Mismatches: 591, Indels: 351
0.84 0.10 0.06
Matches are distributed among these distances:
871 1 0.00
872 106 0.02
873 88 0.02
874 2 0.00
877 4 0.00
878 1 0.00
882 5 0.00
883 305 0.06
884 3 0.00
885 2 0.00
886 2 0.00
887 212 0.04
888 271 0.06
889 352 0.07
890 240 0.05
891 299 0.06
892 283 0.06
893 338 0.07
894 123 0.03
895 215 0.04
896 78 0.02
897 467 0.10
898 207 0.04
899 118 0.02
900 239 0.05
901 447 0.09
902 211 0.04
903 15 0.00
904 26 0.01
907 1 0.00
908 34 0.01
909 104 0.02
910 34 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCGGCGTAGTGCCCGCCCGCCCGCCTCGCTCAT
TTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACTGAGGGTTG
CGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCC
TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGGACCGAGGGTTGTAGCAGCACAT
GCTGGGCTCGAGCATGTGCTGGTGCCACAATTTTCTTCACTGGGGCACCATAGCCGGAGCATCGC
CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
Found at i:11313968 original size:26 final size:26
Alignment explanation
Indices: 11313916--11313968 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11313906 GTTGACTTAG
* *
11313916 GCATACGGAGTTCATTCCCAATTTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
*
11313942 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
11313968 G
1 G
11313969 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:11315448 original size:26 final size:26
Alignment explanation
Indices: 11315411--11315462 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11315401 GTTGACTTAG
11315411 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11315437 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
11315463 AATCATACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11317237 original size:26 final size:26
Alignment explanation
Indices: 11317201--11317253 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11317191 GGTTGACTTG
*
11317201 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
11317227 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
11317253 G
1 G
11317254 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:11317511 original size:902 final size:901
Alignment explanation
Indices: 11315346--11324048 Score: 10983
Period size: 901 Copynumber: 9.7 Consensus size: 901
11315336 GTCGATACTC
* * * * *
11315346 GGCTTGCACATCACGCCCCTCTGGCCGGTTAAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
11315411 GCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATC--A-T--AC
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
* * * * * * * *
11315471 CA--G-AGCGACAGCACATGCTGGGCTCGGGCATGTGCTAGTGTCACATTTTTCTTCGTCGGGGT
131 GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * ** * * *
11315533 ACCATCGTCGAAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGAGGGC
196 ACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* * ** * *
11315598 CAGGGGGGTGTGCGCAGATGATGTGCAACAGGTGCTGGTATTTGACCCTTATATTGGCCCCCTAT
261 C--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
11315663 CCCTCATCAAACTTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
324 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
11315728 TAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACT
389 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
11315793 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCATGTT
454 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
11315858 T-GGGCCAAAACT-CTTTCCGCAAAAAGTTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
519 TGGGGCCAAAACTCCTTT-C-AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
11315921 CATGAAAAATAGAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTG
582 CATGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
11315986 TATGAATTTACAAGCCATAAAAATGGCATTGGCACAT--AGAAATATGAAGATGTGCCTAAACAC
646 TATGAATTTACAAGCCATAAAAATGGCATTGG-A-ATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
11316049 ACTTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACATAGT----GCCCG
709 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * ** *
11316110 --C--CCGCCCACTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
774 CCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* ** * ** * * *
11316171 GACCGGACCGAGGGTTGCGACAGCGGGATCGATAGCACGCAGAGGGGGACTCGACCGAT-CCT
839 GACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCT
* * * *
11316233 CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTTACTTA
1 -GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
11316298 GCCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGT-TGAAGATCGGACTGG
65 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AAGATCGGACTGG
* * * * ** *
11316362 ATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCACCAG
129 A-CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* ** * * * *
11316427 GGCACCATCGTCGGAGCATCACTAGAAAACCTGACCGACGTCATTGGGGTTCCGGCGATCGGAGG
193 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* *
11316492 GGCCGGGGGGTGTGTGCACATGAAGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
258 GGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
11316557 ATCCCTCATCAAACCTCAAGAAGTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCT
322 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
11316622 GGCAGTAGCCATTAAAGAGTATGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACA
387 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
** *
11316687 CTTTAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAG
452 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
11316752 TTTGGGGCCAAAAATCCTTTCAAAAAAATTATCAAAAATCCCAAACAGTAAAAAGTTTCAAAAAT
517 TTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * **
11316817 TATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATGATTGT
582 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
11316882 ATGAATTTACAAGCAATAAAAATGGCATTGGAATGCAAAAATATGAAGACGTGCCTAAACCCACC
647 ATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACC
* ** * * * * *
11316947 TACCACCATATCGATCCACATCTTACGCATCCCTTCTCTCTGGCCGGCATAGTGCTCACCCGCCC
712 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * * *
11317012 GTCTGCCCACTCATTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGAC
777 GTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* *
11317077 CGGA-TCGAGGGTTGCGGTAGCAGGATTGGCAGCATGCAGAGGGGGACCCGGCTGATCCCT
842 CGGACT-GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCT
* * *
11317137 GACTTGCGCATCCCGCCCCTCTGGACGGCTGAGCGCCCGCACGCTCGTTTCGTCGGTTGACTT-G
1 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
11317201 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCGGACTGGAC
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
* * * * ** * **
11317266 TGAGAGTTACGGCAGCACATACTGGGCCCAGGCATGTGCTGGTGCAACATTTTACTTCACCGGGG
131 -GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * * *
11317331 CACCATCGCCAGAGCATCGCCGGAGAACTTGATCGACGACATTGCGATTTCGACGATCGGGGGGG
195 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * * **
11317396 CCAAGGGGTGTGCGCACATGATGTACAATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTAT
260 CC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
11317461 CCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGC
324 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
11317526 CAGTAACCATTAAATTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACC
389 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
11317591 TCGAGTTTTTACCAGAATTTTTTTGTGCATGCCAACAGAAATACAAGGATCACGTCTACCTAGTT
454 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * **
11317656 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAATATCCCAAAACCACAAAAAGTTTCAAAAATC
519 TGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCC-GAACCGTAAAAAGTTTCAAAAATC
* * * *
11317721 TTGAAAAATAGAGAATGAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
583 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
11317786 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATTTGAAGATGTG-CTAAACCCACCT
648 TGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
11317850 ACCACCCTATCGATCAACGGCTTGCGCTTCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCG
713 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * * * *
11317915 TTCGCCCGTTCGTTTCCTTAGTTCGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
778 TCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
11317980 GGAAC-GAGGG-T----T------A-CGGCAGCACGCATAGGAGGACCTGGCCGATCCCC
843 GG-ACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCT
* * * * *
11318027 GACTTGCGCCTCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
1 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
11318092 GCATACGGAGTTCATTCCCAGTCTAAG-AT---GCG---A----C---C----A---GAC----C
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
*** * * * * *
11318132 GAGGGTTGCAAAAGCACATGTTGGGCTCAGGAATTTACTGGTGCCACATTTTTCTTCGTCGGGGC
131 GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * ** * * * *
11318197 ATCATCGTCGGAGCATCGTCGGAGAACCTGATCGATGGCATTGGGGTTCC-AGCGATCGGGAGGC
196 ACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGG
* *
11318261 CCGGGGG-GT-AGCACATGATGTGCGATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTATC
260 CCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * **
11318324 CATCATCAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
325 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
11318389 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
390 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
11318454 CAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTT
455 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
11318519 GGGGTCAAAACT-CTTTCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
520 GGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* *
11318583 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAA-GGATCATTGTATG
585 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
11318647 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTAC
650 AATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
11318712 CACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGTC
715 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTC
* * **
11318777 CATTTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATTAGA
780 C----GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * **** *
11318842 CCAGACCGAGGGTTGTGGCAGCAGGATCAGCAGCACACAGAGGGGGA-CTATATCGAATCCCC
841 CCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCT-G-ATCCCT
* * * * * *
11318904 GGCTTTCGTATCCCGCCCCTCTGGCCGGCTGGGCGACCACACGCTCGTTTCATGGGTTGACTTAG
1 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
**
11318969 GCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGA-TCGGA
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGA
* * * *
11319033 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGCGCTAGTGCCGCATTTTTCTTCGCCGGG
130 -CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * *
11319098 G---CAT------TG--TCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
194 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * * * *
11319152 GCCGGGGGGTTTGCGCCCGTGATGTACGATGGGTTCTGGTACTTGGACCTTATATTGGCCCCCTA
259 GCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* ** * *
11319217 TCCCTCACCAAACCTTGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
323 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
11319282 CCAGTAGCAATTAAAGTGTCT-ATAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
388 CCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
11319346 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG
452 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * **
11319411 TTTGGGGCCAAAACATCCTTCCAAAAAAAATTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAA
517 TTTGGGGCCAAAAC-TCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * * *
11319476 TCATGAAAAATAGAAAACGAGTCATGTTGCAATGAAACTTCATGTGTAGGCTTAAGGGACCATTG
581 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * * *
11319541 TATGAATTTACAAGCCATCAAAATGGCATTGGCATGCAGAAATATCAAGTTGTACCTAAACCAAC
646 TATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
11319606 CTGCCACCCTATCGATCCATGGCATGCGCATCCCGTCTCTCTAGCTGGCATAGTGCCCGCCCGCC
711 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * **
11319671 AG-CCTGCCAGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCACTCCCAGTCTAAGATCAT
776 CGTCC-GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * *
11319735 ACCAGACTGAGGATTGTGGTAGCAGGATCAGCAGCACACAGAGGGGGACCCGACTGAT-CCT
840 ACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCT
* * * * * *
11319796 CGGCTTGCGCATCCTGCCCCTCTAGCCGGCCGAGCGCCCACACGCTCATTTCGTGGGTCGACTTA
1 -GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* ** * * *
11319861 GGCCTATAGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAGTCTCAGATCGGA-TCAG
65 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GG
* * * * * * * *
11319925 ACCAAGTGTTGCAGCAACACTTGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGA
129 A-CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* ** * * * * * *
11319990 GGTACCATCGCTAGAGCATCACCGGAGAACCTAACCGGCGGCATTGGGATTCTGATGATCGGGCG
193 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* *
11320055 GGCCGGGGGTTGTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
258 GGCCGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
11320120 ATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
322 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
11320185 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
387 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
11320250 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
452 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * ***
11320315 TTTGGGGCC-AAACTCCTTCCAAAAAAATTTTAAAAAGTTTTGAACCGTAAAAAGTTTCAAAAAT
517 TTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * *
11320379 CATGAAAAATAGAAAATGAGTCATCTTACCATGAAACTTCACGTGAAGG--T-CGGGACCATTGT
582 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
11320441 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
647 ATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * * *
11320506 TACCACCCTATCGATCCACGGCTTGTGCATCTCGTCTCTCTGGTCAGCATAATGCCTGCCCGCCC
712 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * *
11320571 GACCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
777 GTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * * * * * ** *
11320636 TGGACTGAGAGTTGCAGTAACAAGATCGACAGCATGCAGAAGAGGACCTGATTGATCCCC
842 CGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCT
* *
11320696 GGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
1 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
11320761 GCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTGAGATCGAACCGGGA
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGA
* ** * * *
11320826 CGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTGTTCGTCAGGG
130 CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
11320891 CACCATCGTCAGAGAATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGTTCGGGGGGG
195 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
*
11320956 TCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
260 -C-CGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* ** *
11321021 TCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTT
323 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
11321086 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACAC
388 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
** * * **
11321151 TTCGAAATTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTATGAAGT
453 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** *
11321216 TTGGGGCCAAAACT-CTTTGTGAAAAGATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
518 TTGGGGCCAAAACTCCTTT-CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * *
11321280 CGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
582 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * * *
11321345 TTGAAATTACAAGCCATAAAAATGGCATTGGTATGTAAAAATATGAAGATGTGCCTAAACCCACC
647 ATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
11321410 TACCACCCTATCGATCCACGGCTTGCACATCTCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
712 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * *
11321475 GTCCGCCCTCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
777 GTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * *
11321540 CAGACTGAGGGTTGCGGGAGCAGGATCGGCAGCACGTAAAGGGGGACCCGG-TCGAT-CCT
842 CGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCT-GATCCCT
* * * *
11321599 CAGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCCCACGCTCGTTTCGTGGGTTGACTTA
1 -GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * ** *
11321664 GGCATATGAAGTTCATTCTTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGAC----
65 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA
* *
11321725 CGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
130 CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** * * *
11321790 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGTATTGGGGTTCAGACGATCGGGGGGC
195 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
*
11321855 CCGGGGG-GTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
260 CCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
** * *
11321919 CCTTTTCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
325 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
11321984 AGTAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
390 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
11322049 TGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAGAATACAAGGATCACGTCTACCAAGTTT
455 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* ** * * ** *
11322114 GGGGCCAAAACTCTTTTTGAAAAACTTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGT
520 GGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* *
11322179 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAAGGACCATTGTATG
585 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
11322244 AATTTACAAGCCATAAAAATGGCATTGGCACAT--AGAAATATGAAGATGTGCCTAAGCCCACCT
650 AATTTACAAGCCATAAAAATGGCATTGG-A-ATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
11322307 ACCACCCTATCGATCCACAGCTTACGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCGCCTG
713 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * **
11322372 CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAACCTAAGATCGGACC
778 TCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * *
11322437 GGACAT-AGGGTTACGGTAGCAGGATCAGCAACACGTAGAGGGGGACCC-GATCGATCCCC
843 GGAC-TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCT-GATCCCT
* ** * * *
11322496 GGCTTACGCATTTCGCCCGTCT-GCCTGGCTGAGCGCCCGCAAGCTCATTTCGTGGGTTGACTTA
1 GGCTTGCGCATCCCGCCCCTCTGGCC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
*
11322560 GGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGG
65 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GG
** * *
11322624 ACCGAGGGTTGCGATAGCACATGCTGGGCTCAAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGG
129 A-CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * *
11322689 GGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGTATTGGGGTTCAGACGATCGGGGG
193 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
*
11322754 GGCCGGGGG-GTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
258 GGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
11322818 TCCCTCTTCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
323 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
11322883 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
388 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
11322948 TTTGAGTTTCTAGCTGAATTTTTTTGTGCATGCTAACAAGAATACAAGGATCACGTCTACCAAGT
453 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* ** * * **
11323013 TTGGGGCCAAAACTCTTTTTGAAAAACTTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATC
518 TTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
11323078 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAAGGACCATTGTA
583 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
11323143 TGAATTTACAAGCCATAAAAATGGCATTGGCACAT--AGAAATATGAAGATGTGCCTAAGCCCAC
648 TGAATTTACAAGCCATAAAAATGGCATTGG-A-ATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
11323206 CTACCACCCTATCGATCCACAGCTTACGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCGCC
711 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * **
11323271 TGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAACCTAAGATCGGA
776 CGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * ** * *
11323336 CCGAACAT-AGGGTTACGGTAGTAGGATCAGCAACACATAGAGGGGGACCC-GATCGAT-CTT
841 CCGGAC-TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCT-GATCCCT
* ** * * * *
11323396 CGGCTTACGCATTTCGCCCGTCTGGCTGGCTGAGCGCCCGCAAGCTCATTTCGTGGGTTGACTTA
1 -GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
11323461 GGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA
65 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA
* *
11323526 CCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGG
130 -CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* ** * *
11323591 GCACCATCACCGGAGCATCGTCGGAGAACCTGATCGATGGCATTGGGGTTCCGACGATCGGGGGG
194 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
*
11323656 ACCAAGGGGGTGT--G--C---A-----G-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
259 GCC--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* **
11323708 ATCCCTCATCAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCC
322 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-C
*
11323773 CGCCAGTAGCCATTAAAGTGTCTGAAATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTAC
386 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
11323837 ACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
451 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * *
11323902 GTTTTGGGCCAAAACTCCTTTCAAAAATATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
516 GTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * *
11323967 TTATGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTG
581 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
11324032 TATGAATTTACAAGCCA
646 TATGAATTTACAAGCCA
11324049 NNNNNNNNNN
Statistics
Matches: 6899, Mismatches: 782, Indels: 265
0.87 0.10 0.03
Matches are distributed among these distances:
859 60 0.01
860 143 0.02
861 22 0.00
862 237 0.03
863 4 0.00
864 65 0.01
865 103 0.01
866 1 0.00
870 3 0.00
873 1 0.00
875 3 0.00
876 17 0.00
877 88 0.01
878 2 0.00
880 1 0.00
881 2 0.00
884 2 0.00
887 3 0.00
888 105 0.02
890 87 0.01
891 345 0.05
892 77 0.01
893 175 0.03
894 105 0.02
895 400 0.06
896 957 0.14
897 219 0.03
898 135 0.02
899 552 0.08
900 260 0.04
901 1097 0.16
902 648 0.09
903 355 0.05
904 624 0.09
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
ACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
CGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCC
GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
CTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCT
Found at i:11318999 original size:26 final size:26
Alignment explanation
Indices: 11318969--11319021 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11318959 GTTGACTTAG
*
11318969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
11318995 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11319021 G
1 G
11319022 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11321701 original size:26 final size:26
Alignment explanation
Indices: 11321665--11321717 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11321655 GTTGACTTAG
* **
11321665 GCATATGAAGTTCATTCTTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11321691 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11321717 G
1 G
11321718 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11322597 original size:26 final size:26
Alignment explanation
Indices: 11322561--11322613 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11322551 GTTGACTTAG
11322561 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
11322587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11322613 G
1 G
11322614 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11323498 original size:26 final size:26
Alignment explanation
Indices: 11323462--11323514 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11323452 GTTGACTTAG
11323462 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
11323488 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11323514 G
1 G
11323515 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11327193 original size:26 final size:26
Alignment explanation
Indices: 11327157--11327209 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11327147 GTTGACCTAG
*
11327157 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11327183 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11327209 G
1 G
11327210 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11328093 original size:25 final size:26
Alignment explanation
Indices: 11328052--11328103 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
11328042 ATGTTGACTT
11328052 AGCATATAGAGTTCATTCCCAGGCTA
1 AGCATATAGAGTTCATTCCCAGGCTA
* *
11328078 AGCATAT-GGGTTCATTCCCAGTCTA
1 AGCATATAGAGTTCATTCCCAGGCTA
11328103 A
1 A
11328104 CATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
AGCATATAGAGTTCATTCCCAGGCTA
Found at i:11328379 original size:26 final size:26
Alignment explanation
Indices: 11328343--11328395 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11328333 GTGACTTTAG
11328343 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11328369 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11328395 G
1 G
11328396 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11329240 original size:26 final size:26
Alignment explanation
Indices: 11329210--11329262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11329200 GTTAACTTAG
*
11329210 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
11329236 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11329262 G
1 G
11329263 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11330140 original size:26 final size:26
Alignment explanation
Indices: 11330104--11330153 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
11330094 GTTGACTTAG
11330104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11330130 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
11330154 GAGATCGGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11331939 original size:26 final size:26
Alignment explanation
Indices: 11331910--11331962 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11331900 GTTGAATTAG
*
11331910 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
*
11331936 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
11331962 G
1 G
11331963 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:11332337 original size:901 final size:901
Alignment explanation
Indices: 11328576--11335108 Score: 7743
Period size: 901 Copynumber: 7.3 Consensus size: 901
11328566 GGTGCTGGTA
* **
11328576 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTTCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
11328641 ATTAAACTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACACAATATTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
* * *
11328706 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAGGGATCACGTCTACCAAGTTTAGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* *
11328771 AAAATCCATTT-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
196 AAAATCC-TTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* ** * *
11328835 TAGAAAACGAGTCGTTTTGCCATGAAACTTCGTGTGAAGGCTTAAGGGACCATTATACGAATTTA
260 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
11328900 CGAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTT
325 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
11328965 ATCTATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCTA
390 ATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGGCGTAGTGGCCGCCCGCCCGCCT--CTG
* * *
11329030 CTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCAGACTGAG
452 CTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * *
11329094 GGTTGCGGTAGCAAGATCGACAGCACACAGAGGTGGACCCGGTTGATCCCTGGCTTGTGCATCCC
517 GGTTGCGATAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCC
* * * * *
11329159 GCCCCTCTAGTCGGCTGAGCGCCCGCACTCTCGTTTCATGGGTT-AACTTAGGCATACAGAGTTC
582 GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGAA-TTAGGCATACGGAGTTC
* * * * *
11329223 ATTCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCA-GACTGAGGGTTACGG
646 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGACCGAGGGTTGCGG
* * * * * * *** * * *
11329287 TAGCACATGCTGGGCTTGAGCTTGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACGATCGCCGG
711 CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATAGCCAG
* * * ** *
11329352 AGCGTCACCAGAGAACCTA-ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGTGTG
776 AGCATCGCCGGAGAACCTAGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTG
11329416 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
841 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
11329477 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
11329542 ATTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
*
11329607 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC-
131 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * * *
11329671 AAATTCCTTCCAAAAAAATTTTAAAAAATTCTGAACCGTAAAAAGTTTAAAAAATCGTGAAAAAT
196 AAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * * * *
11329736 AAAAAATGAGTCATCTTACCATGAAACTTCACGTGAAGG--T-CGGGACCATTGTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*** * *
11329798 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCTTAAGCCCACCTACCACCCTA
326 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * ** * * *
11329863 TCGATCCACGGCTTGTGCATCCCGACTCTCTGGTCGGTATAATGCCCGCCCGCCCG--TCCGCTC
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGGCGTAGTGGCCGCCCGCCCGCCTCTGCTC
* * * ** *
11329926 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGAGGGT
455 ATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * ** *
11329991 TGC-AGTAACAAGATCGACAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
520 TGCGA-TAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGC
* * * *
11330055 CCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
584 CCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATT
* * *
11330120 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTGAGATCGGA-CCGGACCGAGGGTTGCAGCAG
649 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGACCGAGGGTTGCGGCAG
* * * * * * * * * *
11330184 CACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTGTTCGCCAGGGCACCATCGTCAAAGA
714 CACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATAGCCAGAGC
* * *
11330249 ATCACCGGAGAACCT-GACCGGCGGCATTGGGGTTCCGGCGATCTGGGGGGCCGGGGGGGTGTGC
779 ATCGCCGGAGAACCTAGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGC
*
11330313 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATC
842 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
11330373 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * **
11330438 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAAATT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
* * **
11330503 TTAGCTGAATTTTTTTGTGCATGGCAACAAAAATTACAAAGGATCATGTCTATGAAGTTTGGGGC
131 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TAC-AAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
11330568 CAAAACTCTTTTGTGAAAAGATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
194 CAAAAATCCTTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * *
11330633 AATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATT
258 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
11330698 TACAAGCCATAAAAATGGCATTGGTATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
323 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * *
11330763 CTATCGATCCACGGCTTGCACATCTCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCTCGTCCGCC
388 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGGCGTAGTGGCCGCCCGCCCG-CC-TC
* * * * * * *
11330828 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATCGGATCGGACCG
450 TGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* ** * * * * *
11330893 AGGGTTACGGGAGCAGGATC-AGCAGCACATAAAGGGGGACCTGGTCCGATCCTCGGCTTACGCA
515 AGGGTTGCGATAGCAGGATCGA-CAGCACACAGAGGGGGACCCGGT-CGATCCCCGGCTTGCGCA
* ** * * * * *
11330957 TCCCGCCCCTCTGGCCAGCTGAGTGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAG
578 TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGAATTAGGCATACGGAG
**
11331022 TTCATTCTTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTG
643 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGACCGAGGGTTG
* * * * * * *
11331086 TGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTACATTTTTCTTCATCGGGGCACCATCGC
708 CGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATAGC
* * * * *
11331151 CGGAGCATCGTCGGAGAACCT-GATCGGTGGTATTGGGGTTCAGACGATCGGGGGGGCC-GGGGG
773 CAGAGCATCGCCGGAGAACCTAGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG
* *
11331214 -GTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTC
837 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
11331278 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
11331343 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
* * *
11331408 CTAGCTGAATTTTTTTGTGCATGCCAACAAGAATACAAGGATCACGTTTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
11331473 AAAATCTTTTTGAAAAAATTTTTAAAAATCCCAAACCGCAAAAAGTTTCCAAAATCATGAAAAAT
196 AAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
11331538 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAAGGACCATTGTATGATTTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
11331603 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACGCTA
326 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
11331668 TCGATCCACGACTTGCGCAGCCCGTCTCTC-ACCGGCATAGTGGCCGCTCGCCCGCCCTCTGCTC
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCGGCGTAGTGGCCGCCCGCCCG-CCTCTGCTC
* * * * * * *
11331732 ATTTCATTGGTTCGCTTAGGCATACGGAGTTCATTCCTAGTCTAACATTAGACCAAACCAAGGGT
455 ATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* ** * * * * * *
11331797 TGCGACAATAGGATTGGCAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCGTCCCACC
520 TGCGATAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCC
* * * * * * *
11331862 CCTCTGGCCAGTTGAACTCCCGTACGCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTC
585 CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATTC
* * **
11331927 CCAGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCAACAGC
650 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGACCGAGGGTTGCGGCAGC
** * *
11331991 ACATGCTAGGCTCAAGCATGTGCTGGTGCCACAATTTTCCTCACCGGGGCACCATAGCCAGAGCA
715 ACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATAGCCAGAGCA
* * * * *
11332056 TCGTCGGAGAACC-AGATCGGTAGCATTGGGGTTCCGGCGATCGAAGGGGCCGGGGGGGTGTGCG
780 TCGCCGGAGAACCTAGACCGGTGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCG
* * *
11332120 CACATGATGTGTGATGGGTGCTGGTACATGGCCCTTATATTAGCCCCCTATCCCTCATC
843 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
11332179 AAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
11332244 ATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
* * * * *
11332309 TTGGCTGAATTGTTTTGTGCAAGCCAACAAAAATACAAAGATCATGTCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * **
11332374 AAACTCCTTCCAAAAAAATTTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAA
196 AAAATCCTTTCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
*
11332439 TAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTA
260 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** *
11332504 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTATCTAAACCCACCTGCCACCCT
325 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
11332569 ATCGGTCCACGGCTTGCGCATCCCGTCTCTCTTGTCGACGTAGTGCCCGTCCGCCCG-CT-TG--
390 ATCGATCCACGGCTTGCGCATCCCGTCTCTC-TGCCGGCGTAGTGGCCGCCCGCCCGCCTCTGCT
* * * *
11332630 --TTTCTTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCTAGGG
454 CATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * ** * ** * *
11332693 TTACGATAGCATGATTGGTAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCACATCCCGC
519 TTGCGATAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGC
** * *
11332758 CCCTCTTACCGGTTGAGCACCCGCACGCTCGTTTCATGGGTT-AACTTAGGCATACAGAGTTCAT
584 CCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGAA-TTAGGCATACGGAGTTCAT
* * *
11332822 TCCCAGTCTCAGCATACGGAGTTCATTCCCAATCTAAGATCGGA-CTA-GACTGAGGGTTGCGGC
648 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGGACCGAGGGTTGCGGC
* * *
11332885 AGCACATGCTAGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCA-ACCCCAG
712 AGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATA-GCCAG
* * * *
11332949 AGCATCGTCAGAGAACCTA-ACCGGTGACATTGGGGTTCCGGCGATC-----G--GGGGGGTGTG
776 AGCATCGCCGGAGAACCTAGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTG
* *
11333006 GGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTCTATATTGGCCCCCTATCCTTCATC
841 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT-TATATTGGCCCCCTATCCCTCATC
* * * * * *
11333067 AAACCTCAAGAACTCACACCCCCTTGAAGACCACTTGAGACTTTATAGGTTTGCTGCCAGTAGCC
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
11333132 ATTAAAGTGTCTGAAATGAGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTT
66 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
* *
11333197 TTCGCTGAATTTTTTTGTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
131 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * ** *
11333262 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAAT
196 AAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* ** * *
11333327 AAAAAATTAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAC
261 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
11333392 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAGGATGTACCTAAACCCACCTATCACCCTA
326 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
*
11333457 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCG-CTC-G---
391 TCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGGCGTAGTGGCCGCCCGCCCGCCTCTGCTC
* ** *
11333513 -TTTCGTCGGTTCTCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
455 ATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * * *
11333577 TGAGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTTGATCCCCGGCTTGCTCAACCCGCC
520 TGCGATAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCC
* * * *
11333642 CCTCTGGCCGGTTGAGCAACCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
585 CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATTC
* * * * * * *
11333707 CCAATTTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCCAAGGTTGTGACAGC
650 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGACCGAGGGTTGCGGCAGC
* * * *
11333771 AGATGCTAGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCGAGGCACCATCA-CCGGAGC
715 ACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT-AGCCAGAGC
* * * * *
11333835 ATCGCCGGAAAACCTGAGCAACGGT---ATTGAGGTTCTGACGAACGGGGGGGGGCCGGGGGGTG
779 ATCGCCGGAGAACCT-AG-ACCGGTGGCATTGGGGTTCCGACGATC---GGGGGGCCGGGGGGTG
*
11333897 TGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
839 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
11333960 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-GGTTTTACTGCCAGTAGT
1 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGC
* *
11334024 CGTTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTT
65 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
* *
11334088 TTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGCCC
130 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
11334152 AAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAAGCGCAAAAAGTTTCAAAAATCGTGAAAAA
195 AAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
11334217 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
260 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** *
11334282 C-AGAAAGTAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
325 CAAGCCA-TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
11334346 TATCGATCCACAGCTTGCGCATCCCCGTCTCTCTGGCCGGCGTAGT-GCCTGCCCGTCCGCC-C-
389 TATCGATCCACGGCTTGCGCAT-CCCGTCTCTCT-GCCGGCGTAGTGGCC-GCCCGCCCGCCTCT
* *
11334408 GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
451 GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * ** * * * * *
11334473 GGGGTTGCCAGCAGTAGGATCGGTAGCACGAGTAGAGGGGGA--TGGCCGATCCCCAGCTTGAGC
516 -GGGTTGCGA-TAGCAGGATCGACAGCAC-A-CAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
** * *
11334536 ATTCCTTACCCCTTCTGGCCTGCCTGAGCGGCCCGGCACG--C---TCA-----T-AATT---CA
577 A-TCC-CGCCCC-TCTGGCC-GGCTGAGC-ACCC-GCACGCTCGTTTCATGGGTTGAATTAGGCA
* * * *
11334587 T--GG-G-T--TT----GACTTAGGATACGGAG-TCATTCCCAGTCTAA-AGCGGATC-GGACCG
636 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGACCG
* * * * * * * * *
11334639 AGGGTTACGGCAGCATATGCTGGGGC-CGAGCATTTGCCGGTGTTTCATATTTTTCTTCACCGTG
701 AGGGTTGCGGCAGCACATGCT-AGGCTCGGGCATGTGCTGGTG--CCACATTTTTCTTCACCGGG
* * * * * * * **
11334703 TCACCATTTTCA-CCGGAGCCAT-GTCGGAGAACGT-GACAGGCGACA-TGGGGTTCCGGTGATC
763 GCACCA---T-AGCCAGAG-CATCGCCGGAGAACCTAGACCGGTGGCATTGGGGTTCCGACGATC
* * * *
11334764 GGGGGTCAGGGGTGTGTGCGCACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCC
823 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
11334829 CCCTATCCCTCATC
888 CCCTATCCCTCATC
* * *
11334843 AAACCTTGAGAACTCACACTCCATTACAGAGCATTTGAGATGGGGACACTCCATTAAAGCCCTTA
1 AAACCTCGAGAACTCACAC-CC----C----C--TT-A-A-AGAG-CA-T---TT---G-----A
* *
11334908 TATTGGCCCCCTATACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
39 GATT-------T-TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
11334973 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
96 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * *
11335038 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAGAAAATC
161 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATC
11335103 CCGAAC
226 CCGAAC
11335109 ATAGGGCGAC
Statistics
Matches: 4890, Mismatches: 613, Indels: 239
0.85 0.11 0.04
Matches are distributed among these distances:
882 41 0.01
883 419 0.09
884 41 0.01
885 2 0.00
886 17 0.00
887 224 0.05
888 262 0.05
890 4 0.00
891 198 0.04
892 125 0.03
893 183 0.04
894 277 0.06
895 11 0.00
896 237 0.05
897 442 0.09
898 259 0.05
899 97 0.02
900 252 0.05
901 445 0.09
902 417 0.09
903 163 0.03
904 33 0.01
905 221 0.05
906 12 0.00
907 93 0.02
908 239 0.05
909 1 0.00
910 4 0.00
917 1 0.00
918 32 0.01
919 103 0.02
920 35 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCGGCGTAGTGGCCGCCCGCCCGCCTCTGCTCA
TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
GCGATAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGACCGAGGGTTGCGGCAGCA
CATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATAGCCAGAGCAT
CGCCGGAGAACCTAGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
Found at i:11333742 original size:26 final size:26
Alignment explanation
Indices: 11333690--11333742 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11333680 GTTGACTTAG
* *
11333690 GCATACGGAGTTCATTCCCAATTTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
*
11333716 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
11333742 G
1 G
11333743 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:11335234 original size:26 final size:26
Alignment explanation
Indices: 11335197--11335248 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11335187 GTTGACTTAG
11335197 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11335223 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
11335249 AATCATACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11337010 original size:26 final size:26
Alignment explanation
Indices: 11336974--11337026 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11336964 GGTTGACTTG
*
11336974 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
11337000 GCATATGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
11337026 G
1 G
11337027 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:11338782 original size:26 final size:26
Alignment explanation
Indices: 11338752--11338804 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11338742 GTTGACTTAG
*
11338752 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
11338778 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11338804 G
1 G
11338805 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11341482 original size:26 final size:26
Alignment explanation
Indices: 11341446--11341498 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11341436 GTTGACTTAG
* **
11341446 GCATATGAAGTTCATTCTTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11341472 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11341498 G
1 G
11341499 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11342367 original size:25 final size:26
Alignment explanation
Indices: 11342333--11342384 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
11342323 GTTGACTTAG
11342333 GCATACGGAGTTCATT-CCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
11342358 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11342384 G
1 G
11342385 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11343268 original size:26 final size:26
Alignment explanation
Indices: 11343232--11343284 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11343222 GTTGACTTAG
11343232 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
11343258 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11343284 G
1 G
11343285 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11343385 original size:900 final size:901
Alignment explanation
Indices: 11337876--11346572 Score: 11194
Period size: 889 Copynumber: 9.8 Consensus size: 901
11337866 GTTGACTTAG
* * *
11337876 GCATACGGAGTTCATTCCCAGTCTAAGAT-GCGACCAGACCGAGGGTTGCAAAAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-GACCAGACCGAGGGTTGCGACAGCACATGCTGG
* * * * * *
11337940 GCTCAGGAATTTACTGGTGCCACATTTTTCTTCGTCGGGGCATCATCGTCGGAGCATCGTCGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* ** * *
11338005 AACCTGATCGATGGCATTGGGGTTGCAG-CGATCGGGGGGCCCGGGGGTTG-GCACATGATGTGC
130 AACCTGACCGGCGGCATTGGGGTT-CAGACGATCGGGGGGGCCGGGGGGTGCGCACATGATGTGC
* * * **
11338068 GATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCATCATCAATCCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
11338133 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
**
11338198 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
* * *
11338263 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCTTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAA
* * *
11338328 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
11338393 CCATTAAACTTTACGTGAAGGCTTAA-GGATCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
11338457 TGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
584 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
11338522 ATCCCGTCTCTCTGGTGGCGGCGTAGTGCCCGCCTG-CCGCCATTTGCCCGCTCGTTTCGTCGGT
649 ATCCCGTCTCTCT-G-GCCGGCGTAGTGCCCGCCCGCCCGCC---CGCCCGCTCGTTTCGTCAGT
* * * * *
11338586 T-GCTTAGGCATACGGAGTGTCATT-CCAAGTCTAAGAT-TAGACCAGAC-GAGGGTTGTGGCAG
709 TGGCTTAGGCATACGGAGT-TCATTCCCAA-TCTAAGATCGA-ACCGGACATAGGGTTGCGGTAG
* *** * * *
11338647 CAGGATCACCA-CACCG-AGAGGGGGACTATATCGAATCCCCGGCTTCCGTATCCCGCCCCTCTG
771 CAGGATCAGCAGCA-CGTAGAGGGGGACCCGATCG-ATCCCCGGCTTACGCATTCCGCCCCTCTG
* * * *
11338710 GCCGGCTGGGCGACCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
834 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
11338775 TAA
899 TAA
** * *
11338778 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
11338843 CTCGGGCATGCGCTAGTGCCGCATTTTTCTTCGTCGGGG---CAT----TG-TCA-C--CGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
11338897 ACCTGACCGGCGGCATTGGGGTTCCG-CGATCGGGGGGGTCAGGGGGTTTGCGCCCGTGATGTAC
131 ACCTGACCGGCGGCATTGGGGTTCAGACGATCGGGGGGG-CCGGGGG-GTGCGCACATGATGTGC
* * **
11338961 GATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
11339026 GCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-ATAAT
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AAT
**
11339090 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * *
11339155 TGCATGCCAA-AAAAAGTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACATCCTTCCAAAA
388 TGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCTTTCCGAAA
* * * ** * *
11339219 AAAATTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATC
451 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
11339284 TTGCAATGAAACTTCATGTGTAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * * * * * *
11339349 CTTTGGCATGCAGAAATATCAAGTTGTACCTAAACCAACCTGCCACCCTATCGATCCATGGCATG
581 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
11339414 CGCATCCCGTCTCTCTAGCTGGCGTAGTGCCCGCCCGCCCGCCTGCCAGCTCGTTTCGCCAGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTG
* * * * * *
11339479 GCTTAGGCATACGGAGTTCACTCCCAGTCTAAGATC-AGACC--AGATGAGGGTTGTGGCAGTAG
711 GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGA-ACCGGACAT-AGGGTTGCGGTAGCAG
** * * *
11339541 GATCAGCAGCACACAGAGGGGGACCCGA-CTGATCCTCGGCTTGCGCA-TCCTGCCCCTCTAGCC
774 GATCAGCAGCACGTAGAGGGGGACCCGATC-GATCCCCGGCTTACGCATTCC-GCCCCTCTGGCC
* * * * **
11339604 GGCCGAGCGCCCACACGCTCGTTTCGTGGGTCGACTTAGGCCTATAGAGTTCATTCCCAGTCTAA
837 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
11339669 GCATACGTAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGTGTTGCGGCAACACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * ** **
11339734 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGTACCATCGCTAGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
11339799 ACCTAACCGGCGGCATTGGGGTTCTGATGATCGGGCGGGCCGGGGGTTGTGCGCACATGATGTAC
131 ACCTGACCGGCGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGG--GTGCGCACATGATGTGC
11339864 GAT--GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
11339927 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
11339992 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
* *
11340057 GCATGCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACTCCTTCCAAAAAA
389 GCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
* **** * * *
11340121 ATTTTAAAAAGTTTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAATGAGTCATCT
453 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCT
* *
11340186 TACCATGAAACTTCACGTGAAGG--T--CGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
11340247 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGACGGCTTG
582 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGCTTG
* * * * * * * * * *
11340312 TGCATCCCCATCTCTCTGGTCAGCATAATGCGCGCCCGCCCG-ACGTCCGCTCGTTTCGTCGGTT
646 CGCAT-CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTT
* * * * * *
11340376 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-AGACTGGAC-TGAGAGTTGCAGTAACA
710 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGA-ACCGGACAT-AGGGTTGCGGTAGCA
* * * * * * * * * * *
11340439 AGATC-GACAGCATGCAAAGGAGGACCTGATTGATCCCCGGCTGAGGCATCCCGCCCCTCTGGCA
773 GGATCAG-CAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATTCCGCCCCTCTGGCC
* *
11340503 GGCTGAGCGCCTGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11340568 CCATACGGAGTTCATTCCCAGTCTGAGATCGAACCAGGCCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCACATGCTGG
** * * * * * * * **
11340632 GCTTGGGCATGTGCTGGTGCCACATTTTTGTTCGCCAGGGCACCATCGTCAGAGAATCACCGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
11340697 AACCTGACCGGCGGCATTTGGGTTTC-GGCGTTCGGGGGGGTCGGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCA-TTGGGGTTCAGACGATCGGGGGGG-C-CGGGGG-GTGCGCACATGATG
* * **
11340761 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
11340826 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* ** *
11340891 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAAATTTTAGCTGAATTGTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* * ** **
11340956 TGTGCATGCCAACAAAAATACAAGGATCATGTATATGAAGTTTGGGGCCAAAACTCTTTGTGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA
* * * * * *
11341021 AGATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATC
451 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
11341086 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
11341151 CATTGGTATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * ** * *
11341216 CACATCTCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCATCCGCCCGCTTGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTG
* * * * ** *
11341281 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGGAGCAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACATAGGGTTGCGGTAGCAGGA
* * * * * * * * *
11341346 TCGGCAGCACATAAAGGGGGACCTGGTCGATCCTCAGCTTACCCATCCCGCCCCTCTGGCCGGCT
776 TCAGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATTCCGCCCCTCTGGCCGGCT
* * * **
11341411 GAGCGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCTTAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
11341472 GCATACGAAGTTCATTCCCAGTCTAAGATC-G---A-ACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* *
11341532 CTCAGGCATCTGCTGGTGCTGCATTTTTCTTCGTC-GGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
11341596 ACCTGA-CGGCGGTATT-GGG-TCAGACGATC--GGGGGCCGGGGGGTGCGCACATGA-GTGTGA
131 ACCTGACCGGCGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGCGCACATGATGTGCGA
**
11341655 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTTTCAAACCTCAAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * *
11341720 GCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGG
*
11341785 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG-TTCTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* ** *
11341849 CATGCCAACAAGAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTTGAAAAACT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAAT
*
11341914 TTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
455 TTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
11341979 CATGAAACTTCACGTGAAGGATTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
11342044 GGCACATAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACAGCTTACGCA
585 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
11342109 TCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCAG-TGGCTT
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTT
* * *
11342173 AGGCATATGGAG-TCATTCCCAACCTAAGATCGAACCGGGACATAGGG-TACGGTAGGCAGGATC
715 AGGCATACGGAGTTCATTCCCAATCTAAGATCGAACC-GGACATAGGGTTGCGGTA-GCAGGATC
* * * *
11342236 AGCAACATGTAGA-GGGGACCCGATCGATCCCCGGCTTACGCATTTCGCCCGTCT-GCCTGGCTG
778 AGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATTCCGCCCCTCTGGCC-GGCTG
* *
11342299 AGCGCCCGCAAC-CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAATCTAA
842 AGCGCCCGC-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11342358 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
*
11342423 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
11342488 ACCTGACCGGCGGTATTGGGGTTCAGACGATCGGGGGGGCCGGAGGGTGCGCACATGATGTGTGA
131 ACCTGACCGGCGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGCGCACATGATGTGCGA
**
11342553 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTTTCAAACCTCAAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
11342618 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
11342683 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTCTAGCTGAATTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
* ** *
11342748 ATGCCAACAAGAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTTGAAAAACTT
391 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATT
*
11342813 TTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
11342878 ATGAAACTTCACGTGAAGGATTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
11342943 GCACATAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACAGCTTACGCAT
586 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
11343008 CCCGTCTCTCTGGCCGGTGTAGTGCCCACCC-CCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTA
651 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTA
* * *
11343072 GGCATATGGAGTTCATTCCCAACCTAAGATCGAACCGGACATAGGGTTACGGTAGCAGGATCAGC
716 GGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACATAGGGTTGCGGTAGCAGGATCAGC
* * * *
11343137 AACATGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATTTCGCCCGTCT-GCCTGGCTGAGC
781 AGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATTCCGCCCCTCTGGCC-GGCTGAGC
* * *
11343201 GCCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
845 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11343258 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
*
11343323 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
11343388 ACCTGACCGGCGGTATTGGGGTTCAGACGATCGGGAGGGCCGGGGGGTGCGCACATGATGTGTGA
131 ACCTGACCGGCGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGCGCACATGATGTGCGA
*
11343453 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCAAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
*
11343518 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
11343583 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTCTAGCTGAATTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
* ** *
11343648 ATGCCAACAAGAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTTGAAAAACTT
391 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATT
*
11343713 TTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
11343778 ATGAAACTTCACGTGAAGGATTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
11343843 GCACATAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTACGCAT
586 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
11343908 CCCGTCTCTCTGGCCAGTGCAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTA
651 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTA
* * * *
11343973 GGCATATGGAGTTCATTCCCAACCTAAGATCGGACCGGACATAGGGTTACGGTAGCAGGATCAGC
716 GGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACATAGGGTTGCGGTAGCAGGATCAGC
* * * * * *
11344038 AACACATAGAGGGGGACCCGATCGATCCTCGGCTTACGCATTTCGCCCGTCTGGCTGGCTGAGCG
781 AGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATTCCGCCCCTCTGGCCGGCTGAGCG
* * *
11344103 CCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
846 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
11344159 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
*
11344224 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
** ** * * ** *
11344289 ACCTGGTCGATGGCATTGGGGTTCCGACGATCGGGGGGACC--AAGG-G-G-----G-TGTGCGG
131 ACCTGACCGGCGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGCGCACATGATGTGCGA
**
11344344 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
11344409 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
11344474 G-CACTTTTTTCAAATGGTCA-AAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
11344537 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTTGGGCCAAAACTCCTTT-CAAAAAAAT
391 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAAAAAT
* * * ** * *
11344601 TTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATTATGAAAAATAGAAAATGAGTTGTCTTGC
455 TTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
11344666 CATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
11344731 GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACA
585 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
11344796 TCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGCTTCGTCGGTTAGCTT
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTT
** * * * * ** * * *
11344861 AGGCATACAAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGCTGTGGCAGCAGGATC-G
715 AGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACATAGGGTTGCGGTAGCAGGATCAG
** * * * * * *
11344925 ACAGCACGGGGA-GGGGA-CCAAGCTGATCCCCAGCTTGCGCA-TCCTGCCCCTTTGGCCTGCTG
780 -CAGCACGTAGAGGGGGACCCGATC-GATCCCCGGCTTACGCATTCC-GCCCCTCTGGCCGGCTG
* *
11344987 AGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ***
11345043 -C-TA---AG---------A-TC----A---GACCAGACCGAGGGTTGTG-CAGCACATGCTTTC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
11345085 CT-ATGGCATGTGTTGGCGTCGCATTTTTCATT-GCCGGGG---CAT--------CA-C--CGGA
66 CTCA-GGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * *
11345134 GAACCTGACCGGCGGTATTGAGGTTCCGACGATCAGGGGGGCCGGGGTGGGTGTGCGCACATGAT
129 GAACCTGACCGGCGGCATTGGGGTTCAGACGATCGGGGGGGCC--GG-GGG-GTGCGCACATGAT
*
11345199 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * * * * *
11345264 CACACCCCTTTAAAGAGCAATTAAGATTTTACAGGTTTTCTACCAGTAGCCATTAATGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** * *
11345329 AATGGCAACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
* *
11345394 TTGTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAA
* * *
11345459 AAAATTTTAAAAAAT-CCAAACCCCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAAGGAGTCGT
450 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
11345523 CTTGCCATGAAACTTCATGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
11345588 GCATTGGCATGCAGAACTATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTT
580 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
11345653 GCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCACCCGTCCGCCCGCTCGTTTCGTCAGTT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTT
* * * *
11345718 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGAC-TGAGGGTTGCCGTAACAG
710 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACAT-AGGGTTGCGGTAGCAG
* * * ** **
11345782 GATCGGCAGGACGTAGAGGGGGACCTGGCCGATCCCCGGCTTGTGCA-TCTCGCCCCTCTGGCCG
774 GATCAGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATTC-CGCCCCTCTGGCCG
* * *
11345846 GCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCA-T-----TC---
838 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11345901 -C---C--A----A-T---A---TAAGATCAGACCAGACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * ** * *
11345949 CTC-GAGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCAGGAGCCTCGTCGGAG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * * * *
11346013 AGCTTGAGCAGCGACATTGAGGTTTCTG-C-ATTCGGGGGGGTCGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTG-GGGTTCAGACGA-TCGGGGGGG-CCGGGGG-GTGCGCACATGATG
*
11346076 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAAG-ACT
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AAGAACT
* *
11346140 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
11346205 AATGGGGACATTTTTTTCAAATGGTCCCAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
* * * * *
11346270 TTGTGCATCCCAACAAAAAAACAAGGATTACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAA
* *
11346335 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTGT
450 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
11346400 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
11346465 GCATTGGCTCGTAGAACTATGAAGATGTGCCAAAACCCACCTACCACACTATCGATGCACGGCTT
580 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * **
11346530 GCGCATCCTGTCACTCTGGCCGATGTAGTGCCCGCCCGCCCGC
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
11346573 TCATTTCATC
Statistics
Matches: 6995, Mismatches: 652, Indels: 321
0.88 0.08 0.04
Matches are distributed among these distances:
847 39 0.01
849 1 0.00
850 2 0.00
852 1 0.00
853 1 0.00
854 1 0.00
855 1 0.00
857 1 0.00
858 5 0.00
860 3 0.00
861 166 0.02
862 327 0.05
863 207 0.03
864 43 0.01
865 1 0.00
867 3 0.00
869 2 0.00
870 1 0.00
875 1 0.00
876 269 0.04
877 210 0.03
878 27 0.00
879 8 0.00
882 2 0.00
883 1 0.00
886 38 0.01
887 113 0.02
888 125 0.02
889 809 0.12
890 94 0.01
891 460 0.07
892 80 0.01
893 273 0.04
894 107 0.02
895 125 0.02
896 2 0.00
897 185 0.03
898 592 0.08
899 458 0.07
900 771 0.11
901 668 0.10
902 405 0.06
903 63 0.01
904 215 0.03
905 89 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATT
TTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTA
GGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACATAGGGTTGCGGTAGCAGGATCAGC
AGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATTCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11344169 original size:26 final size:26
Alignment explanation
Indices: 11344133--11344185 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11344123 GTTGACTTAG
11344133 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
11344159 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11344185 G
1 G
11344186 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11347424 original size:26 final size:26
Alignment explanation
Indices: 11347387--11347439 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11347377 GTTGACTTAG
11347387 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11347413 GCATAC-GCAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
11347439 G
1 G
11347440 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11349203 original size:26 final size:26
Alignment explanation
Indices: 11349173--11349225 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11349163 GTTGACTTAG
11349173 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11349199 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11349225 G
1 G
11349226 ATCAAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11351297 original size:876 final size:874
Alignment explanation
Indices: 11348292--11352729 Score: 4813
Period size: 893 Copynumber: 5.0 Consensus size: 874
11348282 GTTGACTTAG
* * * * * *
11348292 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTACGGCAGCACATGATGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
** * * * *
11348357 CTCGAGCATGTGTTGGTGCCGTATTTTTCTT-GCCAGGGCACCATCGCCGGAGCATCACCGGAGC
66 CTCGAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-AC---GTATCACC-GA--
* * *
11348421 ATCGTCGGAAAACCTGACCGAAGTCATTGGGGTT-CGACGATCGTGGGGGCCGGGGGGAGTGTGC
124 A------G--AACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGGTGTGC
11348485 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
180 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
11348550 TTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
245 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
11348615 AGTGTCTGAAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
310 AGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
** * *
11348680 CCAAATTTGTTTT-TGCATGCCAACAAAAGTACAAGGATCACATCTACCAAGTTTGGGGCCAAAA
374 CTGAATTT-TTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * * * *
11348744 CTCCTTCCAAAAAAATTTTAAAAAATCCCGAACGGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
437 CCCCTTTCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
* * * * *
11348809 AAAGGAGTCGTCTTGCCAAGAAACTTCATGTGAAGGCCTAAAGGACCATTGTATGAATTTACAAG
502 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
11348874 CCATAAAAATGGCATTGGCGCAT-AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATC
567 CCATAAAAATGGCATTGGCAC-TCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTC
* * * * *
11348938 GATCCACGGCTTGTGCATCCCGT-CTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTTGT
631 --T-CACGGC---CG-A---CGTAGT-ACT---CG-C-T--CGCCCGCCCGCCCGCTCGTTTCGT
* * * * * * * *
11349002 CGGTTGGCTTAGGCATACATAGTTTATTCGCAGTCTAAGTTTAGTCCAGATCGAGGGTTGCAGTA
678 CGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTAGATCGAGGGTTGCAGCA
* * ** * * * *
11349067 GCAGGA-TCAGTAGCACGTAGAGGGGGACCCGACCGATCCTAGGCTTGCGCATCCCACCCCTCTG
743 GCAGGATTGA-CAGCACAAAGAGGGGGACCCGACCAATCCTCGGCTTACGCATCCCGCCCCTCTG
* * *
11349131 GCCGGTTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
807 GCCGGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
11349196 TAA
872 TAA
* * * *** * * * *
11349199 GCATATGGAGTTCATTCCCAGTCTAAGATCAAATTGGATCGAGGGTTACAACAGCACCTGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * *** * *
11349264 CTCGGGCATGTGTTGGTGTCACATTTTTCTTTACCGGGG------CAC-TATCGCCGGAGAACCT
66 CTCGAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACGTATCACCGAAGAACCT
* *
11349322 GACCGATGGCTTTGGGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGAT
131 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGAT
11349385 -GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
11349449 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCACTAAAGTGTCTGAAATGGGG
261 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
11349514 ACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCA
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
11349579 TGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAACTTT
391 TGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAAAAAATTTT
** * *
11349644 AAAAAATCTTGAACTGCAAAAAGTTTCAAAAGTCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
456 AAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
11349709 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGC
521 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
11349774 ACAT-AGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCAATCCACGGCTTGCG-CAT
586 AC-TCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTC--T-CACGGC---CGACGT
* * * *
11349837 CATGTCTCTCTGGTCGACGTAGTGCGCGCCCGCCCGCCCGTTT-GTTTC-GTTAG-TT-GGC-T-
644 -A-GT-ACTC-GCTCG-C------C-CGCCCGCCCGCTCGTTTCG--TCGGTTGGCTTAGGCATA
* ** * * * * ** *
11349896 TAG-G--CATTCGGAGT-T---A-TGGATTAGATCGAGGGTTACGGCAGTAGGATTGGTAGCACG
695 CAGAGTTCATTCCCAGTCTAAGATTGGACTAGATCGAGGGTTGCAGCAGCAGGATTGACAGCACA
* * * * *
11349953 CAGAGGGGGACCTGGCTAATCCTCGGCTTATGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCA
760 AAGAGGGGGACCCGACCAATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCA
* * * *
11350018 CGCTCGTTTCGTAGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAA
825 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11350068 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACC-GAATCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGCAGCACATGCTGG
* * * * * * *
11350132 GCTC-AGGCATGTGTTGGTGACACATCTTTCTTCGTCGAGGCACCATCGTCGGAGCATCATCGGA
65 GCTCGA-GCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-AC---GTATCACCGAA
* * * * *
11350196 GAACTTGACCGGCGGCATTGGGGTTCCGACCATCGAGGGGCCTGGGGTGGGGGTGTGCACACATG
125 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC--GGG-GGGGGTGTGCGCACATG
*
11350261 ATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
187 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
11350326 CTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
252 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
11350391 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
317 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* **
11350456 TTTTGTGCATGCCAAAACAATACAAGGATCACGTCTACCAAGTTTGGACCCAAAACCCCTTTCGA
382 TTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGA
* *
11350521 AAAAATTTTAAAAAATCTTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATA-AAAAGGAGTCG
447 AAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
11350585 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAAT
512 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
11350650 GGCATTGGCATTCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCGTCTCTC-CGGCCGA
577 GGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-TCTCTCACGGCCGA
* *
11350714 CGTAGTGCTCGCTCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT
641 CGTAGTACTCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT
* * ** * *
11350779 CCCAATCTAAGATTGGACTGGA-CTGAGGGTTGTGGCAGCATGATTGACAGCACAAAGA-TGGGA
706 CCCAGTCTAAGATTGGACTAGATC-GAGGGTTGCAGCAGCAGGATTGACAGCACAAAGAGGGGGA
* * * * * *
11350842 CCCAACCGATCCCCGGCTCACGCATCCCGCCCCTCTGGTCAGCTAAGCACCCGCACGCTCGTTTC
770 CCCGACCAATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTTC
11350907 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
11350947 ACATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * *
11351012 GTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGATCATCACCAAAGA
66 CTCGAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA-C-G-T-ATCACCGAAGA
* *
11351077 ACCTGACCTG-TGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATG
127 ACCTGACC-GACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGGTGTGCGCACATGATG
* * * * *
11351140 TGCGGTGGGTACTGGTACTTGGCCCCTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
11351205 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
11351270 ATGGGGACACTTTTTCCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
11351335 T-TGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAA
385 TGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAAAA
* * * ** *
11351398 ATATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGGGAAAAATTGAAAACGAGTCGTC
450 A-ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
11351463 TTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
11351528 CATTGGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
579 CATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTC--T-CACGGC---
* * * *
11351593 TGCATC-TCATCTCTCTGGCCGACGTAAAACCCGCCCGCCTGCCTGCCCACTCGTTTCGTCGGTT
638 CG-A-CGT-A-GT-ACT---CG-C-T------CGCCCG-C--CC-GCCCGCTCGTTTCGTCGGTT
* * * * * *
11351657 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGTGTTGCAGCAACAGG
683 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTAGATCGAGGGTTGCAGCAGCAGG
** *** ** * * * *
11351722 ATCAACAGCATGCAGAGGGGGACCCGGTCAATCCTCGGCTTGCGCATCCCGCCCTTATGGTCGGC
748 ATTGACAGCACAAAGAGGGGGACCCGACCAATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGC
* * *
11351787 TGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAA
813 TAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
11351849 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * * * *
11351914 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCG-CAGGCGCACCAT--CG--T--CGGAA-AACC
66 CTCGAGCATGTGTTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCACGTATCACCGAAGAACC
* * *
11351971 TGATCGACGGCATTGGGGTTCCGATGGA-CGGGGGGGCCGGGGTGGGGTCTGCGCACATGATGTG
130 TGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGG-GGGGTGTGCGCACATGATGTG
*
11352035 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
11352100 ACCCTCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11352165 GGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
11352230 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA-CTCATTCTG-AAA
387 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTC-GAAAA
* * ** * * *
11352293 AATTTTAACAAATC-CCAACCGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAATGAGTCGTCT
450 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
11352357 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
11352422 ATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGGTC-CACGGCTTG
580 ATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC--TC--TCTCACGGC-CG
* * * *
11352486 -C-TATCCCGT-CTCTCTGGCCAGCGTAGTGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCAT
640 ACGTA----GTACTCGCTCGCC--C-----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * * * *
11352548 A-TGAAGTTCATTCCCAGTCTAAGATCAGA-TCGAACCGAGGGTTGCGGCAACAGGATTGACAGC
694 ACAG-AGTTCATTCCCAGTCTAAGATTGGACTAG-ATCGAGGGTTGCAGCAGCAGGATTGACAGC
** * * * * ** * * * *
11352611 ACGCAGAGGGGGACCTGTCCGATCCTCGGCTTGCATATCTCGCCCCTCTGGCCGGTTGAGCGCCC
757 ACAAAGAGGGGGACCCGACCAATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCACCC
* * * * * * *
11352676 GTATGCTCATTTCGTGGGTTGACTTAAGCGTATGGAGTTCATTCCCAGTCTAA
822 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
11352729 G
1 G
11352730 ATCAGAACAG
Statistics
Matches: 3063, Mismatches: 350, Indels: 263
0.83 0.10 0.07
Matches are distributed among these distances:
867 2 0.00
868 20 0.01
869 217 0.07
870 4 0.00
871 1 0.00
872 2 0.00
873 3 0.00
874 17 0.01
875 105 0.03
876 333 0.11
877 13 0.00
878 4 0.00
879 246 0.08
880 268 0.09
881 255 0.08
882 75 0.02
883 121 0.04
884 33 0.01
885 145 0.05
886 318 0.10
887 10 0.00
888 5 0.00
889 2 0.00
890 3 0.00
891 36 0.01
892 8 0.00
893 357 0.12
894 25 0.01
895 47 0.02
896 1 0.00
897 13 0.00
898 2 0.00
899 1 0.00
900 2 0.00
901 86 0.03
902 195 0.06
907 83 0.03
908 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (874 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACGTATCACCGAAGAACCT
GACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAAAAAATTTT
AAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTCTCACGGCCGACGTAGTACTC
GCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
GATTGGACTAGATCGAGGGTTGCAGCAGCAGGATTGACAGCACAAAGAGGGGGACCCGACCAATC
CTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11351853 original size:26 final size:26
Alignment explanation
Indices: 11351823--11351875 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11351813 GTTGACTTAG
*
11351823 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
*
11351849 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
11351875 G
1 G
11351876 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:11353296 original size:26 final size:26
Alignment explanation
Indices: 11353253--11353305 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11353243 TCTGTCTGAT
11353253 CTTAGACTGGAAAAGAACTCCGTATG
1 CTTAGACTGGAAAAGAACTCCGTATG
* *
11353279 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAAAGAACTCCGTATG
11353305 C
1 C
11353306 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAAAGAACTCCGTATG
Found at i:11354656 original size:901 final size:887
Alignment explanation
Indices: 11352879--11355873 Score: 3952
Period size: 901 Copynumber: 3.3 Consensus size: 887
11352869 GGTCGGGGCA
* * * *
11352879 TTGTTGGCATGTATAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGA
1 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
11352944 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGC
66 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * *
11353009 TCTTTTAGGGGGTGTGAGTTCTCGAGGTTTGATAAGCGATGGGGGGCCAATATAAGGGCCAAGTA
131 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * ** * * *
11353074 CCAGCACCCATCACACATCATGTACGCACA-CCCCCCAGCCCCCCCGATTGTGGGAATCCTAA-C
196 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCATCGGAACCCCAATC
* * * * * *
11353137 ATCGTCGATCAGGTTC-TCTGGCGATGCTCCGGCAATGGTGCCCCAACGTAGAAAAATGCAGCAC
261 -CCGTCGGTCAGGTTCTTC-GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCAC
* * * * *
11353201 CAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCATTCTGTCTGATCTTAGACTGGAAA
324 CAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGTCTGATCTTAGACTGGGAA
* *
11353266 AGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAATTA--GT
389 AGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGT
* * ** *
11353329 GCAGGCACTCAGCCGGTTAGAGGGGCGGGATGCACAAGCCGAGGATCGGACGAGTCCCCCTCTGC
454 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG-CGAGGATC-GACGGGT-CCCCTCTGC
* * *
11353394 GTGCTGCCGATCCTGCTGCCACAACCCTTGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGT
516 -TGCT--CTATCCTGCT-CCACAACCCTTGGTCTGGTC--ATCTTAGACTGGGAATGAACTCCGT
* * * *
11353459 ATGCCTAAGCCAACCGATGAAATGAGCGGGCGAGCAGACGGGCGAGCGGGCGGGCACTACGCTGT
575 ATGCCTAAGCCAATCGACG-AA--A-----C--G-AG-CGGGCTAGCGGGCGGGCACTACGCAG-
* *
11353524 CCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
627 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
11353589 TATTTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
692 TATTTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
11353654 CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAATTTTTTACGGTT
757 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GTT
* * * ** **
11353719 CGAGATTTTTTAAACTTTTTTGGAAGGGAATTTTGGCAACAAACTTGGTAGATGTGATCCTTGTA
821 CGGGATTTTTTAAAATTTTTTGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
11353784 TTT
885 TTT
* * * *
11353787 TTGTTGGCATGCA-AAAAAAATTCAGATAAAAACTTGAAGTGTAAAAGATTTTGCGACCATTTGA
1 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
11353851 AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
66 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
11353916 TCTTTAAGGGGGTGTGAGTACTCGAGGTTTGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGTA
131 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* *
11353981 CCAGCACCCATCACACATCATGTGCGCACTCCTCCCCCCGGCCCCCCCGATCATCGGAACCCCAA
196 CCAGCACCCATCACACATCATGTGCGCAC-AC-CCCCCCGGCCCCCCCAATCATCGGAACCCCAA
*
11354046 TCCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCAC
259 TCCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCAC
* *
11354111 TAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCTAATCTTAGACTGGGA
324 CAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCG-TCTGATCTTAGACTGGGA
*** *
11354176 AAGAACTCCGTATGCTTAGACTGGGAATGAACTTTATATGCCTAAGTCAACCCATAAAATGAGCG
388 AAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCG
* *
11354241 TGTGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGACCGGGTCACCCTCTG
453 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGC-GAGGATCGA-CGGGTC-CCCTCTG
11354306 CATGCTACTTATCCTGCTACCACAACCCTTGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCG
515 C-TGCT-C-TATCCTGCT-CCACAACCCTTGGTCTGG-TC-ATCTTAGACTGGGAATGAACTCCG
* *
11354371 TTTGCCTAAACCAATCGACGAAACGAGCGGGCTAGCGGGCGGGCACTACGCCAGCCAGAGAGACG
574 TATGCCTAAGCCAATCGACGAAACGAGCGGGCTAGCGGGCGGGCACTACG-CAGCCAGAGAGACG
* * * **
11354436 GGATGCGCAAGCCGTGTATCGATAGGGTGGTCGATGGGTTTAGGCACATCTTCATATTTCTATGT
638 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
* * *
11354501 GCCAA-AGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTCAGCCTTCACATGAAGTTT
703 GCCAATA-CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
** *
11354565 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGCTTCGGGATTCTT
767 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG-TTCGGGATTTTT
11354630 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
831 TAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
* * * *
11354688 TTGTTGGCATGCACAAAACAATTCATCTAAAAACTCGATGTGTACATGATTTTGTGACCATTTGA
1 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
11354753 AAAAAGTGTCCCTATTTCAGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
66 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
11354818 TCTTTAAGGGGGTGTGACTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
131 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
11354883 CTAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCGCAATCATCGGAACCCCAATG
196 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCATCGGAACCCCAATC
* * * * *
11354948 CCGTCGGTCAGGTTCTCCGACGACGCTCCGGCGATGGTGCCTCGACGAAGAAAACTGTAGCACCA
261 CCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCA
* * * * * * *
11355013 GCACATGCCTCACCCCAGCATGTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGATTAGGAAT
326 GCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCC-GTCTGATCTTAGACTGGGAAA
* * *
11355078 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTG
390 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTG
* * ** ** * *
11355143 CGGGCGCTCAGTCGACCAGAGGGATGGGATGCGTAAGCCAGGGATTGATCGGGTCCCC-CT-CTG
455 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCGA-GGATCGA-CGGGTCCCCTCTGCTG
* * * *
11355206 ---TATGCTG-T---CGA-TC-TGGTAT-G--ATCTTAGACTGGGAATGAACTCCGTATGCCTAA
518 CTCTATCCTGCTCCACAACCCTTGGTCTGGTCATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
11355259 GCCAATCGACGAAACGAGCGGGCGGGCAGGTGGGCGGGCGGGCACAAGGTCGGCCAGAGAGACGA
583 GCCAATCGACGAAACGA----GCGGGC---T-AGCGGGCGGGCACTACG-CAGCCAGAGAGACGG
11355324 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
639 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
11355389 CCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
704 CCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
*
11355454 AGGCAAGAC-ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTA
769 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GTTCGGGATTTTTTA
* *
11355518 AAATTTTTTTTGAAGCAGTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTT
833 AAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
* *
11355573 TTATTGGCATGCACAAAAAACTTCAG-TAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
1 TTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
11355637 AAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
65 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
11355702 CTCTTTGAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT-TAAGGTCCAAGT
130 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * **
11355766 ACCAGCATCCATCGCACATCATGTGCGCACACCCCCCCGGTACCCCCCAATCGCCGGAACCCCAA
195 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG-CCCCCCCAATCATCGGAACCCCAA
** * * **
11355831 TGTCGCCGGTCAAGTTCTTCGGTGATGCTCCGGCGATGGTGCC
259 TCCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCC
11355874 GCCACCCTCG
Statistics
Matches: 1861, Mismatches: 193, Indels: 89
0.87 0.09 0.04
Matches are distributed among these distances:
879 48 0.03
883 7 0.00
884 54 0.03
885 257 0.14
886 66 0.04
887 162 0.09
888 1 0.00
890 1 0.00
891 6 0.00
896 2 0.00
897 1 0.00
898 2 0.00
899 4 0.00
900 245 0.13
901 269 0.14
902 201 0.11
903 1 0.00
905 1 0.00
907 195 0.10
908 12 0.01
910 121 0.07
911 75 0.04
912 7 0.00
913 121 0.07
914 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCATCGGAACCCCAATC
CCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCA
GCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGTCTGATCTTAGACTGGGAAAG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGC
GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCGAGGATCGACGGGTCCCCTCTGCTGCTC
TATCCTGCTCCACAACCCTTGGTCTGGTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AATCGACGAAACGAGCGGGCTAGCGGGCGGGCACTACGCAGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGTTCGGGATTTTTTAAAATTTTTTGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
Found at i:11355093 original size:26 final size:26
Alignment explanation
Indices: 11355064--11355116 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11355054 CCGGTCTGAT
*
11355064 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
11355090 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11355116 C
1 C
11355117 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11355826 original size:885 final size:888
Alignment explanation
Indices: 11352879--11355873 Score: 3886
Period size: 885 Copynumber: 3.3 Consensus size: 888
11352869 GGTCGGGGCA
* * * *
11352879 TTGTTGGCATGTATAAAAAAATTCAGCT-AAAAACCCAAAGTGTACAAGATTTTGTGACCATTTG
1 TTGTTGGCATGCACAAAAAAATTCAG-TAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
11352943 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATG
65 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * *
11353008 CTCTTTTAGGGGGTGTGAGTTCTCGAGGTTTGATAAGCGATGGGGGGCCAATATAAGGGCCAAGT
130 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * ** * * * *
11353073 ACCAGCACCCATCACACATCATGTACGCACA-CCCCCCAGCCCCCCCGATTGTGGGAATCCTAAC
195 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCATCGGAACCCCAAT
** * * * * * *
11353137 ATCGTCGATCAGGTTCTCTGGCGATGCTCCGGCAATGGTGCCCCAACGTAGAAAAATGCAGCACC
260 GCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACC
* * *
11353202 AGCACATGCC-CGAGCCCAGCATGTGCTACCGTAACCCTCA-TTCTGTCTGATCTTAGACTGGAA
325 AGCACATGCCTC-AGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGG-A
* *
11353265 AAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAATTA--G
388 AAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCG
* * ** *
11353328 TGCAGGCACTCAGCCGGTTAGAGGGGCGGGATGCACAAGCCGAGGATCGGACGAGTCCCCCTCTG
453 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATC-GACGGGT-CCCCTCTG
* * * * *
11353393 CGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTG
516 CATGCT----A---TGCTG--------CTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * *
11353458 TATGCCTAAGCCAACCGATGAAATGAGCGGGCGAGCAGACGGGCGAGCGGGCGGGCACTACGCTG
566 TATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCAG--GTG-G-GCGGGCGGGCACTACGC-G
* * *
11353523 TCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
626 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
11353588 ATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
691 ATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
11353653 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAATTTTTTACGGT
756 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GT
* * * ** **
11353718 TCGAGATTTTTT-AAACTTTTTTGGAAGGGAATTTTGGCAACAAACTTGGTAGATGTGATCCTTG
820 TCGGGATTTTTTAAAATTTTTTTGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
11353782 TATTT
884 TATTT
* * *
11353787 TTGTTGGCATGCA-AAAAAAATTCAG-ATAAAAACTTGAAGTGTAAAAGATTTTGCGACCATTTG
1 TTGTTGGCATGCACAAAAAAATTCAGTA-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
11353850 AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
65 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
11353915 CTCTTTAAGGGGGTGTGAGTACTCGAGGTTTGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGT
130 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
11353980 ACCAGCACCCATCACACATCATGTGCGCACTCCTCCCCCCGGCCCCCCCGATCATCGGAACCCCA
195 ACCAGCACCCATCACACATCATGTGCGCAC-AC-CCCCCCGGCCCCCCCAATCATCGGAACCCCA
* * *
11354045 ATCCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCA
258 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCA
* * * *
11354110 CTAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCTAATCTTAGACTGGG
323 CCAGCACATGCCTCAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACT-GG
*** *
11354175 AAAGAACTCCGTATGCTTAGACTGGGAATGAACTTTATATGCCTAAGTCAACCCATAAAATGAGC
387 AAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGC
* * *
11354240 GTGTGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCACAAGCTGAGGATCGACCGGGTCACCCTCT
452 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGA-CGGGTC-CCCTCT
* * *
11354305 GCATGCTACTTATCCTGCTACCACAACCCTTGGTCTGGTTCAATCTTAGACTGGGAATGAACTCC
515 GCATG---C-TATGCTGCT----CGA-TC-TGGTCT-G----ATCTTAGACTGGGAATGAACTCC
* * * *
11354370 GTTTGCCTAAACCAATCGACGAAACGA----GCGGGC---T-AGCGGGCGGGCACTACGCCAGCC
565 GTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCAGGTGGGCGGGCGGGCACTACG-CGGCC
* * *
11354427 AGAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTCGATGGGTTTAGGCACATCTTCATA
629 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
** * *
11354492 TTTCTATGTGCCAA-AGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTCAGCCTTCAC
694 TTTCTACATGCCAATA-CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* **
11354556 ATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGCTTC
758 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG-TTC
* *
11354621 GGGATTCTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
822 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
11354686 TT
887 TT
* * * *
11354688 TTGTTGGCATGCACAAAACAATTCA-TCTAAAAACTCGATGTGTACATGATTTTGTGACCATTTG
1 TTGTTGGCATGCACAAAAAAATTCAGT-AAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
11354752 AAAAAAGTGTCCCTATTTCAGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
65 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
11354817 CTCTTTAAGGGGGTGTGACTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
130 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
11354882 ACTAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCGCAATCATCGGAACCCCAAT
195 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCATCGGAACCCCAAT
* * * *
11354947 GCCGTCGGTCAGGTTCTCCGACGACGCTCCGGCGATGGTGCCTCGACGAAGAAAACTGTAGCACC
260 GCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACC
* * * *
11355012 AGCACATGCCTCACCCCAGCATGTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGATTAGGAA
325 AGCACATGCCTCAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACT-GGAA
* * * *
11355077 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGT
389 AGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGT
* * ** ** *
11355142 GCGGGCGCTCAGTCGACCAGAGGGATGGGATGCGTAAGCC-AGGGATTGATCGGGTCCCC-CT-C
454 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGA-GGATCGA-CGGGTCCCCTCTGC
*
11355204 -TG-TATGCTG-TCGATCTGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATC
517 ATGCTATGCTGCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATC
* * *
11355266 GACGAAACGAGCGGGCGGGCAGGTGGGCGGGCGGGCACAAGGTCGGCCAGAGAGACGAGATGCGC
582 GACGAAACGAGCGGGCGGGCAGGTGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGC
11355331 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATAC
646 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATAC
*
11355396 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAG
711 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
11355461 AC-ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTT
776 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GTTCGGGATTTTTTAAAATTTT
* *
11355525 TTTTGAAGCAGTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTT
840 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
* *
11355573 TTATTGGCATGCACAAAAAACTTCAGTAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
1 TTGTTGGCATGCACAAAAAAATTCAGTAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
11355638 AAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
66 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
11355703 TCTTTGAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT-TAAGGTCCAAGTA
131 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * **
11355767 CCAGCATCCATCGCACATCATGTGCGCACACCCCCCCGGTACCCCCCAATCGCCGGAACCCCAAT
196 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG-CCCCCCCAATCATCGGAACCCCAAT
* * * * **
11355832 GTCGCCGGTCAAGTTCTTCGGTGATGCTCCGGCGATGGTGCC
260 GCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
11355874 GCCACCCTCG
Statistics
Matches: 1836, Mismatches: 204, Indels: 117
0.85 0.09 0.05
Matches are distributed among these distances:
879 48 0.03
883 7 0.00
884 53 0.03
885 257 0.14
886 73 0.04
887 156 0.08
888 1 0.00
890 1 0.00
891 6 0.00
896 2 0.00
897 1 0.00
898 2 0.00
899 4 0.00
900 246 0.13
901 253 0.14
902 207 0.11
907 195 0.11
908 18 0.01
909 6 0.00
910 121 0.07
911 72 0.04
912 5 0.00
913 100 0.05
916 1 0.00
917 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
TTGTTGGCATGCACAAAAAAATTCAGTAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCATCGGAACCCCAATG
CCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCA
GCACATGCCTCAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGAAAG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGC
GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACGGGTCCCCTCTGCATGC
TATGCTGCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACG
AAACGAGCGGGCGGGCAGGTGGGCGGGCGGGCACTACGCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGTTCGGGATTTTTTAAAATTTTTTTGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
Found at i:11357617 original size:26 final size:26
Alignment explanation
Indices: 11357577--11357629 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11357567 TCTGGTTGAT
*
11357577 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGCAATGAACTCCGCATG
* *
11357603 CTTAGATTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGCATG
11357629 C
1 C
11357630 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGCATG
Found at i:11358501 original size:877 final size:878
Alignment explanation
Indices: 11357286--11359572 Score: 2812
Period size: 876 Copynumber: 2.6 Consensus size: 878
11357276 TCCCCATTTC
*
11357286 AGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
**
11357351 TTCTCAAGGTTTGATGAGGGATAGGGAGCCAATATAAAAGCCAAGTACCAGCACCCATCGCACAT
66 TTCTCAAGGTTTGATGAGGGATA-GGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
11357416 CATGTGCGCACACCCCCCGCCGCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGG
130 CATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGG
* * *
11357481 TGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCA
195 CGATGCTCCTGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
11357546 TGTGCTGCCGCAAACCCTCGGTCTGG-TTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGAT
260 TGTGCTGCCGC-AACCCTCGATCTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
11357610 TGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAACGTGCGGGCGCTCAAAGGGTGAG
324 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCATGCGGGCGCTCAAAGGGT-AG
* * * *
11357675 AGGGGTGGGATGTGCAAGCCAGGAATCGG-CTGGGTCCCCCTCTGCATGCTGCCGATCCTACTAC
388 AGGGGCGGGATGAGCAAGCCAGGAATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* * *
11357739 TACAACCCTCGGTCTGGTTCACATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
452 TGCAACCCTCAGTCTGGTTCA-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* **
11357804 AAAATGAGTGGATGGGTGGG-TGGGCGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGCCG
516 AAAATGAGCGGACAGGTGGGCT-GGCGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGCCG
*
11357868 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTC-TATGTGCCAATGCCATTT
580 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTA-GTGCCAATGCCATTT
* * * * *
11357932 TTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTTATGGCAGGACTAC
644 TTACGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACATGAACTTTCATGGCAAGACGAC
* * * * *
11357997 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTGCT-CGGTTCTAGATTTTTTAAAATTTTTTCG
709 TCATTTTCTATTTTTCACGATTTTTAAAACTTT-CTACAGTTCGAGATTTTTTAAAATATTTTCG
* * * * * *
11358061 GAAGGAGTTTTGGCACCAAACCTGGTAGACATGATCGC-TGCATTTTTGTTGGCACGCATAAAAA
773 GAAGGAGTTTTGGCACCAAACATGGAAAACATGATC-CTTGCATTTCTGTTCGCACGCACAAAAA
11358125 AATTCAGCTAAAAACTCGAAGTGTAC-A-A-G-ATTT-TG-T
837 AATTCAGCTAAAAACTCGAAGTGTACAAGATGCATTTATGCT
* *
11358161 -GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTTTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * ** * *
11358225 TTCTCGAGGTTTGATGAAGGATAGCGAGTAAAATATAAGGGCCAAGTACCAGCACCTATCGGACA
66 TTCTCAAGGTTTGATGAGGGATAG-GAG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
11358290 TCATGTACACACACCCCCTCGGCCCCCCCGATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTCT
129 TCATGTGCGCACACCCCC-C-GCCCCCCCGATCGTC-GGAACCCTAATGCCGTCGGTCAGGTTCT
** * *
11358354 TTGGCGATGCTCCTGTGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCC
191 CCGGCGATGCTCCTGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
11358419 AGCATGTGCTGCCACAACCCTCGATCTGGCCTGATCTTAGACTGGGAACGAACTCCGTATGCTTA
256 AGCATGTGCTGCCGCAACCCTCGATCTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * * * * *
11358484 GACTGGGAATAAACTCCGTTTGCCTAAGTCAAACGATGAAACGAGCATGCGGGCGTTCAACCGGC
321 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCATGCGGGCGCTCAA-AGGG
* * * * * *
11358549 TAGAGGGGCAGGATGCGCAGGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCT
385 TAGAGGGGCGGGATGAGCAAGCCAGGAATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * *
11358614 GCCGCAACCCTCAGT-TCGG-TCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
450 ACTGCAACCCTCAGTCT-GGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
11358677 GACAAAATGAGCGGGCAGGTGGGCTGGTGGGCACTACGCCGACCAGAGATATGGGATGCGTATGG
513 GACAAAATGAGCGGACAGGTGGGCTGGCGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGC
11358742 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTAGTGCCAATGCCATT
578 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTAGTGCCAATGCCATT
* * * *
11358807 TTTACGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCATATGAAGTTTCATGGCAAGACGA
643 TTTACGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACATGAACTTTCATGGCAAGACGA
* * * *
11358872 CTCATTTTTTATTTTTCATGATTTTTAAAACTTTTTACAGTTCGGGATTTTTTAAAATATTTTCG
708 CTCATTTTCTATTTTTCACGATTTTTAAAACTTTCTACAGTTCGAGATTTTTTAAAATATTTTCG
* * * * *
11358937 GAAGGAGTTTTGGCCCCAAACATGGAAAACGTGATCCTTGTATTTCTGTTCGCATGTACAAAAAA
773 GAAGGAGTTTTGGCACCAAACATGGAAAACATGATCCTTGCATTTCTGTTCGCACGCACAAAAAA
*
11359002 ATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
838 ATTCAGCTAAAAACTCGAAGTGTACAAGA-----TG--CATTT------A-TG----C---T
*
11359064 CAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
1 -AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
11359129 GTTCTCCAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
65 GTTCTCAAGGTTTGATGAGGGAT-AGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * **
11359194 TCTTGTGTGCACA--------CCCCCCGATCGTCGAAACCCTAATGCCACCGGTCAGGTTCTCCG
129 TCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCG
* * * **
11359251 ACGATGCT-CTGGCGATGGTGACCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
194 GCGATGCTCCT-GTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * *
11359315 CATGTGCTACCGCGACCCTCGATCCAGTCC-GATCTTAGACTGGTAATGAACTCCATATGCTTAG
258 CATGTGCTGCCGCAACCCTCGAT-CTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * ** *
11359379 ACTGGGAATGAACTCCATATGCCTAAGTTAACCCACGAAA-CAGGCATGCGGGCGCTCAGTTGGC
322 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACCA-GCATGCGGGCGCTCA-AAGGG
* * * * * *
11359443 CAGAGGGGCGGGATAAGTAAGCC-GAAGATCGGTCGGGTCCCCCTCTACGTGCTGCCTATCCTGC
385 TAGAGGGGCGGGATGAGCAAGCCAGGA-ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* **
11359507 TACTGTAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
449 TACTGCAACCCTCAGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
11359572 A
514 A
11359573 TGAGCAAGCC
Statistics
Matches: 1201, Mismatches: 159, Indels: 85
0.83 0.11 0.06
Matches are distributed among these distances:
873 1 0.00
874 85 0.07
875 48 0.04
876 357 0.30
877 263 0.22
878 5 0.00
884 1 0.00
887 4 0.00
893 4 0.00
894 297 0.25
895 9 0.01
903 1 0.00
904 41 0.03
905 83 0.07
906 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (878 bp):
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCAAGGTTTGATGAGGGATAGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGC
GATGCTCCTGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGATCTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCATGCGGGCGCTCAAAGGGTAGAGG
GGCGGGATGAGCAAGCCAGGAATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCA
ACCCTCAGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAT
GAGCGGACAGGTGGGCTGGCGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTAGTGCCAATGCCATTTTTACGGC
TTGCAAATTCATACAATGGTCCCTTAAGCCTTCACATGAACTTTCATGGCAAGACGACTCATTTT
CTATTTTTCACGATTTTTAAAACTTTCTACAGTTCGAGATTTTTTAAAATATTTTCGGAAGGAGT
TTTGGCACCAAACATGGAAAACATGATCCTTGCATTTCTGTTCGCACGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATGCATTTATGCT
Found at i:11359377 original size:26 final size:26
Alignment explanation
Indices: 11359348--11359400 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11359338 CCAGTCCGAT
*
11359348 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11359374 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11359400 C
1 C
11359401 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11360248 original size:25 final size:26
Alignment explanation
Indices: 11360200--11360249 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
11360190 AGTCCGATCA
*
11360200 TAGACTGGGAATGAACTCTATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
11360226 TAGACT-GGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
11360250 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:11360778 original size:26 final size:26
Alignment explanation
Indices: 11360749--11360799 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11360739 CAATTTCGAT
* *
11360749 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
11360775 CTTAAACTGGGAATGAACTCTGTAT
1 CTTAAACTGGGAATGAACTCTGTAT
11360800 CACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:11361686 original size:26 final size:26
Alignment explanation
Indices: 11361650--11361705 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
11361640 TCGATCTGAT
11361650 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11361676 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11361702 CTTA
1 CTTA
11361706 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11362911 original size:905 final size:899
Alignment explanation
Indices: 11360690--11375524 Score: 13721
Period size: 905 Copynumber: 16.6 Consensus size: 899
11360680 AAGGAGTTTT
* * * * * *
11360690 GGCACCAACACATGCCCGAGCCCAGCATGTCCTGTCGTAACCCTCGGTTCAATTTCGATCTTAGA
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCT-GATCTTAGA
* * * * *
11360755 CTGGGAATGAATTCTGTATGCTTAAACTGGGAATGAACTCTGTAT-CACTAAGTCAACCCATGAA
65 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC-CTAAGTCAACCCACGAA
* * * **
11360819 ACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCC
129 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
* * **
11360884 CCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCTTTGGT-TCGGTCCAATCTTAGACTGGGAAT
194 CCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTT-GTCT-GGTCTGATCTTAGACTGGGAAT
* * * * *
11360948 GAACTCTGTATCCCTAAGCCAACCGATGAAACGA--GCGGGCGGGCGGGCAGGCACTACGCCGGA
257 GAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGCGGGAGGGCGGGCGGGCACTACGCCGGC
* ** *
11361011 CAGAGAGACGGGATGCGCAAGCCGTGGATCCATACCGTGGTAGGTGGGTTTATGCACATCTTCAT
322 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * *
11361076 ATTTATGCATGCCAATGCCATTTTTATGGCCTGTAAATGCATACAATGGT-CCTTAAGCCTTCAT
387 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * * *
11361140 GTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCACGTTTTTTGAAAA-TTTTTGCGGTT
452 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG-ATTTTCAAAACTTTTTACGGTT
* * *
11361204 CGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGCCCCAAACATGGTAGACGTGATCCTTGTA
516 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * * * * *
11361269 TTTTTTTTGGTATGCACAAAAAAATTCAGCCAAAAATTCAAAGTGTACAAGATTTTGTGATCGTT
581 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
11361334 TGAAAAAAGTGTCCCCA-TTCAGACACTTTAATGGCTATTAGAAGCAAACCTGTAAAATCTCAAA
646 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
11361398 TGCTCTTTAAGGGGGTGTGAGGTTCTCGTAGGTTTTGATGAAGGGATAGGGGCCCAATTATAAGG
711 TGCTCTTTAAGGGGGTGTGA-GTTCTCG-AGG-TTTGATG-AGGGATAGGGGGCCAA-TATAAGG
* * * *
11361463 GCCAAGT-CCAGCAACCCATCACACATCATGTGCGCACAACCCCCCGGCAACTCCAGATCGTCGG
771 GCCAAGTACCAGC-ACCCATCGCACATCATGTGCGCACACCCCCCCGGC--CCCCCGATCGTCGG
* * * * * *
11361527 AACGCCCAATGCCGCCGATTAGTTTC-CCGA-GATGCTCTGCGATGGCTG-CCCG-CGAAAAAAA
833 AAC-CCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGCGATGG-TGCCCCGACGAAGAAAA
* *
11361588 AAGT
896 ATGC
* * * * *
11361592 GGCACCAACACATGCTCGAACCCAGCATGTGCTATCGCAACCCTCGGTTCGATCTGATCTTAGAC
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGAC
* *
11361657 TGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* ** * ** * *
11361722 GAGCGTGCGGGTGCTCAGTTGGGCAGAGGGGCGAAATGCACAAGTCGGGGATC-AGTCGGGTCCC
131 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCC
* * ***
11361786 CCTCTCCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGA
195 CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT-TGTCTGGTCTGATCTTAGACTGGGAATGA
* * * *
11361851 ACTCCGTATGCCTAAGTCAACCGACGAAACGAGCG-GGCAGGCGGACGGGCGGGCACTACGCCCG
259 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGCGGGA-G-GG-CGGGCGGGCACTACGCCGG
* * *
11361915 CCAGAGAGACGGGATGTGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCA
321 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*** *
11361980 TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCA
386 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * *
11362045 CGTGATGTTTCATGGCAAGACGACTCATTTTTTATTCTTCACGATTTTCAAAAC-TTTTAGCGGT
451 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTA-CGGT
* * * * * * *
11362109 TCAGGATTTTTTAAAATTTTTTTGGAATGATTTTTGGGCCTAAACTTGGTAGATGTGATCCTTGT
515 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
11362174 ATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
580 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
11362239 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
645 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
11362304 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCA
710 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
11362368 AGTACCAGCACCCATCGCACATAATGTGCGTACACCCCCCCGGCCCCCCGATCGTCGGAACCCCA
775 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCA
* * *
11362433 TTGTCACCGGTCAGGTTCTTCGACGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGC
840 ATGCCGCCGGTCAGGTTCTTCGACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGC
* * * *
11362494 GGCACCAACACATGCCCGAGCCAAGCATGTGCTGTCACAACCCTCGGTCCGATCTGATCCTAGAC
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGAC
* * *
11362559 TGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCC-TATGCCTAAGTTAACCCACAAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * *
11362623 GAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGGTGCGTAAGTCGAGGATCGATCGGGTCCGC
131 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
** * * *
11362688 CTCTGTATGCTGCTGATCCTGCTACCGCAACCCTTGTCTGGTCTGATCTTAGACTGGAAATGAAC
196 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGTCTGGTCTGATCTTAGACTGGGAATGAAC
*
11362753 TTCCGTATGCCTACGCCAACCGATGAAACGAGCGGACGGGAGGGCAGGTGGGCGGGCACTACGCC
261 -TCCGTATGCCTAAGCCAACCGATGAAACGAGC-G-CGGGAGGGC----GGGCGGGCACTACGCC
* * * *
11362818 TGCCAAAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTCGTAGGTGGGTTTAGGCACATCTT
319 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
11362883 TATATTTCTGCATGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCCTTAAGCCTT
384 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-T
*
11362948 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACG
448 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACG
* * * * * * *
11363013 GTTCGGGATTTTGTAAAATTTTTTCAGAAGGGGTCTTGGCCCTAAACTT-TTAGACGTCATCCTT
513 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
11363077 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACC
578 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
11363142 ATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTC
643 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* ** * *
11363207 AAATGCTCTATAAGGGCATGTGAGTTCTTGAGGTTTGATGA-GGATAAGGGGCCAATATAAGGGC
708 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
11363271 CAAGTACC-G------T---AC-CCA--T-CGCACACCCCCCCGGCCCCCTCGATCGTCGGAACC
773 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACC
* * * ** * *
11363322 CCATTGCCGTCGGTCAGGTTCCTCGGTGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATAC
837 CCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGC
* *
11363386 GGCACCAGTACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTCGGT-C---C-GA-C---G-C
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGAC
* *
11363441 ---------A------AT-CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCATGAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * ** * * **
11363490 GAGCGTGCGGGCGCTCAACCGACTAGAGGAACGGGATGTGCAAGCCGGAGATCGGCCGGGTCCCC
131 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* * * * * * *
11363555 CTTTGTGTGCTACCGATCCTGCTGCC-AAACCTTTGTCCGGTCTGATCTTAGACTGGGGATGAAC
196 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * *
11363619 TACATATGCCTAAGCCAACCGACGAAACGA--GC----GGGCGGGCGGGCACTACGTCGGCCAGA
261 TCCGTATGCCTAAGCCAACCGATGAAACGAGCGCGGGAGGGCGGGCGGGCACTACGCCGGCCAGA
11363678 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
326 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * * *
11363743 CTACGTGCGAATGCCATTTTTATGGCTTGTAAATTCATCCAATGCTCCCTTAAGCCTTCACGTGA
391 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * * *
11363808 AGTTTCATGGCAAGTCGACTCATTTTCTATTTTTCATGACTTTT-GAAACCTTTTGCGGTTCGAG
456 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTCAAAACTTTTTACGGTTCGGG
* *
11363872 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGGCGCGATCCTTGTATTTT
520 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
*
11363937 TGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
585 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
*
11364001 AAAAGTGTCCCCATATT-AGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
650 AAAAGTGTCCCCAT-TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
11364065 TCTTTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGG-TAGGGGGCCAATATAAGGGCCAAGTA
714 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* *
11364129 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCTCGATCGTCGGAACCCCAATGC
779 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
* *
11364194 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATTGTGCCCCGACGAAGAAAAATGC
844 CGCCGGTCAGGTTCTTCGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGC
* * ** *
11364251 GTCACCAGCACATGCCCGAGCCTAGCATGTGCTACCACAA-CC-C--T-CG----G-TC-----C
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGAC
*
11364301 ---G-AT----T-CG-AT-CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* ** * * * * * **
11364355 GAGCGTGCGGGCTCAAAGCCGGCTAGAGGGGCAGGATGCGTAAACCGGGGATTGGCCGGGTCCCC
131 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* * *
11364420 CTTCTGCGTGCTGCCGATCCT-CTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
196 C-TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT-TGTCTGGTCTGATCTTAGACTGGGAATGA
* * * *
11364484 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGGCGGGCAGGCACTACACCGAC
259 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGC--GCGGGAGGGCGGGCGGGCACTACGCCGGC
* * *
11364549 CAGACAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAGGTACATCTTCAT
322 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
11364614 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
387 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * * *
11364679 GTGAAGTTTCATGGAAAGACGACTCGTATTCTATTTTTCATGATTTTCGAAGCTTTTT-TGGTTC
452 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC
* * * * ** *
11364743 GAGAATTTTTAAAATTATTTCGGAAGGACTTTTGG-CCCTGACTTGGCAGACGTGATCCTTGTA-
517 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * *
11364806 TTTTGCTGGCGTGCACAAAACAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
582 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
11364871 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAAT
647 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
11364936 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
712 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
11365001 TACTAGCACCCATCACACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAAT
777 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
**
11365066 GCCGCCGGTCAGGTTC-TC--CG--G-T----GATGGTGCCCCGGTGAAGAAAAATGC
842 GCCGCCGGTCAGGTTCTTCGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGC
** * * * * *
11365114 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTTGGTCTGGTCTGATCTTAGAT
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGAC
* * *
11365179 TGGGAATGAACACCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
** * ** * *
11365244 GAGCGTGCGGGCGCTCAATCGGCCAGAGGGGTGGGATGCGCAAATCGGGGATTG-GCAGGGTCCC
131 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCC
* * * * * * * * *
11365308 CCTCTGCATGCTGTCGATCTTACTGCTGCAACCCTCGGTCTGATCCGATCCTAGACTGGGAATGA
195 CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT-TGTCTGGTCTGATCTTAGACTGGGAATGA
** *
11365373 ACTCCGTATGTGTAAGCCATCCGATGAAACGAGCGGGCGGGCAGACGGGCGGGCGGGCACTACGC
259 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGC--GC-GG--GA-GGGCGGGCGGGCACTACGC
** *
11365438 TAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCT
318 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * * **
11365503 TCATATCTCTACGTGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGTGT
383 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
11365568 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTTACG
448 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACG
** * *
11365633 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCGAAAACTTGGCAGACGTAATCCTT
513 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
** ** * *
11365698 GTATTTTTGTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCCTAGTGAACTAGATTTTGTGACC
578 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
11365763 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
643 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
11365828 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGC
708 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
11365893 TAAGTACCGGCACCCATCGTACATCATGTGCGCACA---------CCCCCCGATCGTCGGAACCC
773 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCC
* * *
11365949 CAATACCGCCGGTCAGGTTC-TC--CG--G-T----GATGGTGCCACGACGGAGAAAAATGC
838 CAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGC
* * *
11366001 GGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGAC
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGAC
* ** * * * ** *
11366066 TGGGAATGAACTCCGTATGCCTA-A----G--CCAA--CCG-A---CGAA-ACGAGCGGACG-GA
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAA
* * * * * * * **
11366116 --AG-G-GCGGGCACTACA-CCGGCCATAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGG
130 CGAGCGTGCGGGCGCT-CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
** * * * * * * *** * * *
11366176 TAC-GTGGGT-TTAGGC-A-CAT-CT---TCATATTTTTG-CAT-GCCAATGCAATTTTTATGGC
194 CCCTCTGCGTGCT-GCCGATCCTGCTGCCGCA-ACCCTTGTC-TGGTC--TG--A-TCTTA-GAC
** ** * * ** * ** *** **
11366231 TTGTAAATTCA-TAC-AATGGTCCCTTAAGCCTTCCCG-TGAAGTTTC-ATG-GCAAGACATCTC
250 -TGGGAATGAACTCCGTAT-G--CC-TAAGCC-AACCGATGAA---ACGA-GCGCGGGAGGGCGG
**** ***** ** ** * * ** * *** *
11366291 GTTTTCTACTTTTCACGATTTTCA-A-A-AC--TTTTTGC-AGTTCG-AGATTTTTTAAAATTTT
305 GCGGGC-AC---T-ACGCCGGCCAGAGAGACGGGATGCGCAAG-CCGTGGA---TCGATAGGGTG
* * * * * * * ** ** * ** *
11366349 TTTGGAAGGAGTTTTGGCCCCAAACATGGTA-GACGTG-AT-CC-TTGTAATTTTCT-TGGCATG
361 GTAGG-TGG-GTTTAGG-CAC-ATCTTCATATTTC-TGCATGCCAATGCCATTTT-TATGGCTTG
* * **** ** **
11366409 CACAAAAAAATTCAGCTAAAAACTTGGAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCC
420 ------TAAATTCA--T-ACAA--TGGTCCCT-TAAG--CCT-T---CACGTG----AAGT-T--
* * * * ** * *
11366474 CCACT-TC-AGAC-ACT--TTAATGGCTA-CTGGCAGTAAACTTGTAAAATCTCAAATGCTCTTT
460 TCA-TGGCAAGACGACTCGTT--T-TCTATTTTTCA-T-GA--T-T----T-TCAAA-ACT-TTT
* * * * * * * ** ** * ** ** * *
11366533 AAGGGGGT-GTGAGTTCTTGAGGTTTGAT--G-AGG-GATAGGGGGCCAATA-TGAGGGCCAAGT
509 TA-CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA-ACT--TGG--TAG-
** *** * ** * * *** ** * * ** ** **
11366592 ACCAGCATCCATCACACATCATG-TGCGCACTCCCCCCGATCA-CCGGAACCCCAATGC-CGTCG
567 ACGTG-ATCC-TTGTA-TTTTTGTTG-GCA-TGCACAAAAAAATTC---AGCTAAAAACTCGAAG
* * *** ** ** ** * **** * * * ***
11366654 -GT-C-AGGTTCTCCGGTGATGGTCCGACGATGGTG-CTCCAACGAAGAAAAATGTGGCACCAGC
624 TGTACAAGATT-T--TGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACT-T--TAATGGC
* * * * **** * ** ** *** * * * * *
11366715 -ACATGCCCGAGCCCAGCATGTGCTGTCGC-AACCCTCGATTCGATCTGATCTTAG-ACTGGGTA
682 TAC-TG-GC-AG-CAAACCTGTAAAATCTCAAATGCTC--TTTAAGGGGGTGTGAGTTCT-CG-A
* * * ** * *
11366777 GGAACTTTGTATTCATGGACT-GGGAGTGAACTCCGT-A-TGCCTAAGT--CA--ACCCAT-G-A
739 GG---TTTG-A-TGAGGGA-TAGGGGGCCAA-T--ATAAGGGCC-AAGTACCAGCACCCATCGCA
* * * * ** * * ** * ** * * *
11366833 -AACGAGCGTGCG-AGC-GCTCAGCGG--GCCAGAAGGGCGGGATGCGCAA-GCCAGGGATCGAT
794 CATC-A-TGTGCGCA-CACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCC---G-CCGGT
* * * *
11366892 CGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCTGTAACCCTCGGTCTGATCCAATCCTAGACT
851 CAGGT-----TC--T-T-C-GACGATGCT-CCGC-G--A---T-GG--TG--CC---CC--GA--
**
11366957 CGGAATGAACTCCTATGCC
887 C-GAA-GAA---AAATG-C
* ** * ** * * * *
11366976 TATGCCAACC-GACGACATGAACGGGCGGACGGACGGGCTG--GCATTA-CATCGG-CCGA---G
1 ---GGC-ACCAG-C-ACATGCCCGAGCCCA-GCATGTGCTGTCGCA--ACCCTCGGTCCGATCTG
** ** * * * * * * * * *
11367033 AGATGGGA-TGCGCAAGCCGTGGA-T-CGATAGGGTGGTAG-GTGGGTTTAGGCACATCTTCATA
57 ATCTTAGACTG-GGAA----TGAACTCCG-TATGCT--TAGACTGGG--AATG-A-A-CTCCGTA
** ** ** ** **** * ******** * *
11367094 TTTCTGTGTGGC-ATGCAC-AAA--A-AAT----AAATTCA----GCTA-AAAAAATAAATTCAA
109 TGCCTAAGT--CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-G
******* * ** *** * * * *
11367145 CTAAAAAATAAATCG-TTGGAACCCAAAGCTGTCG-G-T-CAGGTTCTCTGGTGATGCAGCAACC
171 C-AAGCCGGGGATCGATCGGGTCCC-CCTCTG-CGTGCTGC-CGATC-C---TGCTGCCGCAACC
* * * * * *
11367206 CTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGA-CAAA--A-
228 CT-TGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
* * * * *
11367267 --C---A-AGCGGGAGGGCACTATGCCGGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAG
292 CGCGGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * *
11367326 GGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCGTGCCAATTCCATTTTTATAGCTTGTA
357 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* ** * * *
11367391 AATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTGAGACGACTGGTTTTTTAAT
422 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
11367456 TTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAGATTTTTTTGCAAGGAGTTTTGG
487 TTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
** *
11367521 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGAAATGCATAAAAAAATTCAGCTAAAAA
552 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
11367586 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTGT-AGACACTTTAATTG
617 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TCAGACACTTTAATGG
* * * *
11367650 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGTTGTGAGTTCTCAAGGTTTGA
681 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
11367715 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACC
746 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* * * * * *
11367780 CCCCCCGG-CCCCCGATAGTC-GATACCCCAATGCCGTCGGTTAGGTTCTCCGGCGATGCCCCGA
810 CCCCCCGGCCCCCCGATCGTCGGA-ACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCG-
** *
11367843 CGATGGTGCCCCGGTGAAGAAAAATAC
873 CGATGGTGCCCCGACGAAGAAAAATGC
* * * *
11367870 GGCACCAGTACATACCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGAC
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGAC
* * *
11367935 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAAT
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * *
11368000 GAGCGTACGGGCGCTCATCCAGCCAGAGGGG-TGGATGCGCAAGTCGGGGCTCAATCGGGTCCCC
131 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* * * * * * * * *
11368064 CTCTGCGTGCTACCAATCCTACTGCCACAACCCTCGATCCGATCCGATCTTAGATTGGGAATGAA
196 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTG-TCTGGTCTGATCTTAGACTGGGAATGAA
* *
11368129 CTCCGTATGCCTAAACCAACC-A--ACAA--A-------A---C-GGCGGGCACTACGCCGGCTA
260 CTCCGTATGCCTAAGCCAACCGATGA-AACGAGCGCGGGAGGGCGGGCGGGCACTACGCCGGCCA
*
11368178 GGGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
324 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
11368243 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGT
389 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * *
11368308 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTGATGGTTTGG
454 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGG
*
11368373 GATTTTTTAAAATTTTTTCGGAAGGAGTTCTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
519 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
** * * * *
11368438 TTGTTGGCATGCGTAAAAAACTTCAGCTACAAATTTGAAGTGTACAAGATTTTGTGACCATTTGA
584 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-
* *
11368503 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTCGTAGCAAACCTGTAAAATCTCAAATG
648 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
11368568 CACTTTAA-GGGGT-TAGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
713 CTCTTTAAGGGGGTGT-GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * ** *
11368631 TACCAGAACCCATCGCACATCATGTGCGCACACCCCCCCGACCCTCCCGATCCCCGAAACCCCAA
777 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAA
* * * * * *
11368696 TGTCGCCAGTCAGGTTCTTCGACGATGCTTCGGTGATGGTGCCCCGGC-AAGAAAAATGT
841 TGCCGCCGGTCAGGTTCTTCGACGATGC-TCCGCGATGGTGCCCCGACGAAGAAAAATGC
* * * *
11368755 GGTACCAACACATGCCTCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCAATCTGATCTTAGA
1 GGCACCAGCACATGCC-CGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGA
* * * *
11368820 CTAGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAA
65 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * ** * *
11368885 TGAGCGTGCGGGTGCTCAGCGGGCCAGAGGGGTGGGATGCACAAGTGGGGGAT-TAGCCGGGTCC
130 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCC
** * * *
11368949 CCCTCTGCGTGCTATCGATCCTGTTGCCGCAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATG
194 CCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT-TGTCTGGTCTGATCTTAGACTGGGAATG
* * * * *
11369014 AATTCTGTATGCCTAAGCCAACTGATGAAATGA--GC----GGGC--G-GGGCACTACGCCAGCC
258 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGCGGGAGGGCGGGCGGGCACTACGCCGGCC
* * * * *
11369070 AAAGAGACGGGATGCACAAGCCGTGGATCGATAAGGTGGTAGGTGAGTTTAGGCTCATCTTCATA
323 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * *
11369135 GTTCTGCATGCCAATGCCATTTTTACGACTTGTAAATTCATACAATGATCCCTTAAGCCTTCACG
388 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * **
11369200 TGAAGTTTCATGGCACGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
453 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCG
* * *
11369265 AGATTTTTTAAAATTTGTTT-AGAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTAT
518 GGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-
* *
11369329 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATT
581 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
11369394 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
646 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
11369459 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGAATAGGGGGCCAACATAAGGGCCAA
711 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
11369524 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCCATCGCCGGAACCCCA
776 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCA
* ** * *
11369588 ATGCCGTCGGTCAGGTTC-TCTGGTGATGCTCCGGTGATGGT-CCCCGATGAAGAAAAATGC
840 ATGCCGCCGGTCAGGTTCTTC-GACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGC
* * * * ** * * *
11369648 GGCACCACCACATGCCCGAGCCTAGCAAGTGCTGCCATAACCCTCGATCCGGTCCGATCTTAGAC
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGAC
* * *
11369713 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATTCCTAAGTCAACCCACAAAAT
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * **
11369778 GAGCGTACGGACGCTCAGCTGCCCAGAGGGGCGGGATGCGCAAGCCGGGGACCGGCCGGGTCCCC
131 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* ** * **
11369843 CTCTGCATGCTATCAATCCTGCTGCCGCAA-CCTCAATCTGGTCTGATCTTAGACTGGGAATGAA
196 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT-TGTCTGGTCTGATCTTAGACTGGGAATGAA
* * *
11369907 CTCCGTATTCCTAAGCCAACCGATGAAACGAGCGGGCGGCGGGCGGGCGGGCGGGCACTATGCCG
260 CTCCGTATGCCTAAGCCAACCGATGAAACGA----GC-GCGGGAGGGCGGGCGGGCACTACGCCG
* * *
11369972 ACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTC
320 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
11370037 ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
385 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * **
11370102 ACGTGAAGTTTCATGGCAAAACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
450 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGT
* * * *
11370167 TCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAACCTTGGTAGATGTGATCCTTGT
515 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
11370232 ATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTTGAAGTGTACAAGAATTTGTGACCAT
580 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
11370297 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAGCAAACCTGTAAAATCT
645 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-G--GCAGCAAACCTGTAAAATCT
* *
11370362 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAGGG
707 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
11370427 CCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCCGGGCCCCTCGTTCGTCGAAAC
772 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCCCGATCGTCGGAAC
* * * * * * *
11370492 CCCAATGCCGCTGGTTAGGTTCTCCGACGAAGCTTCGGCGATGGTGCCCCGACGAAAAAAAATGT
836 CCCAATGCCGCCGGTCAGGTTCTTCGACGATGC-TCCGCGATGGTGCCCCGACGAAGAAAAATGC
* * * * * *
11370557 GGCACCAGCACATGCCTGAGCCTAGCAGGTGCTGTCACAACCATCGGTCCGGT-TCGATCTTAGA
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCT-GATCTTAGA
* *
11370621 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAA
65 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* ** ** * * **
11370686 CGAGCTTGTAGGCAATCAGCTGGCCAGAGGGGCGAGATGATCAAGCCGGGGATCGATCGGGTCCC
130 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
* * * * ** * *
11370751 CCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAGTC-CATTTGATCTTAGACTAGGAATGA
195 CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT-TGTCTGGTCTGATCTTAGACTGGGAATGA
* ** * *
11370815 ACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGGCGGCGGGCGGGCACGCGAGCACTACGCC
259 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGCG-GGAGGGCGGG--CG-G-GCACTACGCC
* * * * *
11370880 AGCCAGAGAGACGGGATGCACAAGTCGTGGATAGATAGGGTGGAAGGTGGGTTTAGGCACATCTT
319 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
11370945 CATATTTCTGTGA-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCT
384 CATATTTCTG-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* **
11371009 TTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
448 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACG
* * *
11371074 ATTCGGGACTTTTTAAAATATTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCT
513 GTTCGGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
11371138 TGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCAAAAAACTCAAAGTGTACAAGATTTTGTGAC
577 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
11371203 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
642 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * * *
11371268 TAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGCCCCATATAAGGG
707 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
11371333 CCAAGTACCAGCACCCACCACACATCATG-GCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACC
772 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACC
* ** * *
11371396 CCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGT
837 CCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGC
* * ** * *
11371460 GGCTCCAACACATGCCCGAGCCCATAATGTGCT-ACGTAA-CC-C--T-CG----G-TC-----C
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGAC
11371509 -----A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * ** * *
11371563 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGTAATTCGGTGATCGGTCGGGTCCCC
131 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
*
11371628 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAA
196 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTT-GTCTGGTCTGATCTTAGACTGGGAATGAA
* * * * * * * *
11371693 CTCCATATACCTAAGCCGACCGACGAAACGA--GCGGGCGGGC-GGAGGGCACTAGGCCGACCAG
260 CTCCGTATGCCTAAGCCAACCGATGAAACGAGCGCGGGAGGGCGGGCGGGCACTACGCCGGCCAG
* *
11371755 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGCTGGTAGGTGGATTTAGGCACAT-TGTCATAT
325 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT-TCATAT
*** *
11371819 TTCTATGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
389 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * ** *
11371884 GAAGTTTCGTGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCCG
454 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGG
* *
11371949 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTT
519 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
11372014 TTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGA
584 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
11372079 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGTAGCAAACCTATTAAAATCTCAAATG
649 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT-GTAAAATCTCAAATG
* *
11372144 CTCTTTAAGGGGGTGTGGGTTCTCAAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGT
713 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
11372208 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTGATCGCCGGAACCCTAATG
778 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATG
** * * * ** *
11372272 CCGTTGG-CTAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATAC
843 CCGCCGGTC-AGGTTCTTCGACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGC
* * * * * * *
11372330 GGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCACAACCCTTGGT-CTAGTCCGATCTTGGA
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGA-TCTGATCTTAGA
* * *
11372394 CTGGGAATGAACTGCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA
65 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
11372459 CGAGTGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCGGTCAGGTCCC
130 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
* * * *
11372524 CCTCTGCGTGTTACCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
195 CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT-TGTCTGGTCTGATCTTAGACTGGGAATGA
* * * * *
11372589 ACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGGGTGGACGGGCGGGCGGGCACTAGGTCGGC
259 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGCG-GGA-GGGCGGGCGGGCACTACGCCGGC
* * * * * *
11372654 CAGAGAGATGGGATGCGTAAGCCATGGATCGATAGGCTGGTAGGTGGATTTAGGCACATCATCAT
322 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * *
11372719 ATTTCTGCGTGCCAATGCCATTTTGATGGCTTGTAAGTTCATACAATGGTCCCTTAAACCTTCAC
387 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * **
11372784 GTGAAATTTCGTGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
452 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC
* *
11372849 TGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-T--TAGACGTGATCCTTGTAT
517 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
11372911 TTTTGTTGGCATGAAAAAAAAAATTCAACTAAAAACTC-ATAGTGTACAAGATTTTGTGACCATT
582 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATT
* *
11372975 TGAAAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACT-GTAGCAAACCTGTAAAATCTCAAA
646 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
11373039 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
711 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
11373104 GTACC-G--------GCAC-CCAT-T--G--CA--------------C-A---TC--AACCCTAA
776 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAA
* * * * ** *
11373134 TGCCGTCGGTTAGGTTCTTCGGCGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGT
841 TGCCGCCGGTCAGGTTCTTCGACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGC
* ** * * ** *
11373194 GGCACCAGCACATGCCCGAGCCCAGCATTTGCTACCACAGCCCTCGGTCC-ATTCCAATATTAGA
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGA-TCTGATCTTAGA
* *
11373258 CTGGGAATGAACACCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
65 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * *
11373323 CGAGCGTACGGGCGCTCAGCCGGCAAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
130 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
* * *
11373388 CCTCTGCGTGCTGCTGATCCTGCTGCCAG-AACCCTCGATCCGGTCTGATCTTAGACTGGGAATG
195 CCTCTGCGTGCTGCCGATCCTGCTGCC-GCAACCCTTG-TCTGGTCTGATCTTAGACTGGGAATG
* * * * * * * * *
11373452 AACTCCGTATGCCAAAGCCAATCGAAGAAATGA--GCGTGCGTGCGAGCGGGCATTACGCCGGCC
258 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGCGGGAGGGCGGGCGGGCACTACGCCGGCC
* *
11373515 AGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATA
323 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*** * * *
11373580 TTTCTTTGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCAAG
388 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * * *
11373645 TGAAGTTTCATGGCAAGACGACTCATTTTTTCTTTTTCATGATTTTCAAAACTTTTAACGGTTCA
453 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCG
* * *
11373710 GGATTTTTTAAAA-TTTTTCTGGAAGGAGTTTTGGCCCCAAACTCGGTAGTCATGATCCTTGTAT
518 GGATTTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
11373774 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
582 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
11373839 GAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
647 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
11373904 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
712 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * *
11373969 TACCAGCACCCATCACACATCATGTGCGCACACCCCCACCCGGCCCCCTCGATCATCGAAACCCC
777 TACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCCGGCCCCC-CGATCGTCGGAACCCC
* * * *
11374034 AATGCCGCCGGTCAGGTTC-TCCAGCAATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGT
839 AATGCCGCCGGTCAGGTTCTTCGA-CGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGC
* * * * *
11374096 GGCACCAGCACATGCTCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGAC
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGAC
* * *
11374161 TGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACCCACGAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * ** * *
11374226 GAGCGTGCGGACGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCTAGGATCGACCAGGTCCCC
131 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* * * *
11374291 CT-T---TG-T---G-T--TACTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGAAATGAA
196 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTG-TCTGGTCTGATCTTAGACTGGGAATGAA
* * * ** * * ** *
11374345 CTCTGTATGCCTGAGCCAACCTACCAAACGAGCGGGCGGACGGGCAGGCGGGCACTTTGCCGACC
260 CTCCGTATGCCTAAGCCAACCGATGAAACGAGCGCG-GGA-GGGCGGGCGGGCACTACGCCGGCC
* * * *
11374410 AGAGAGATGGGATGTGCAAGCCGTGGATCGAGAGGGTGGTAGGTGGGTTTTGGCACATCTTCATA
323 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
11374475 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
388 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
** **
11374540 TGAAGTTTCATGGCAAGACGACTAATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
453 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCG
* *
11374605 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAACCTTGGTAGATGTGATCCTTGTATT
518 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
11374670 TTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATTTT
583 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
11374735 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATG
648 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * ** * * *
11374800 CTCATGAAGGGAGCATTAGTTCTCGAGGTTTAATGAGAGATAGGGGGCCAATATAAGGGCCAAGT
713 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
11374865 ACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
778 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAAT
* ** * * * * * * * * *
11374930 GCCGTCTATCACGTTCTCCGGCGATGCTCCGATGATGCTGACTCGACGAGGAAAAATGA
842 GCCGCCGGTCAGGTTCTTCGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGC
* * * * *
11374989 GACACCAGCAAATGCCCGAGCCCAGCACGTGCTGTCGTAA----C---CC-A-C-G------GTC
1 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGAC
* * * *
11375038 T--G---G---TCCG-AT-ATTAGACTGGGAATGAACTCCATATGCCTAAGTTAACCCATGAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * *
11375093 GAGCGTGCAGGCGCTCAGCCGCCCAGAGGGGCGGGATGCGCAAGTCGAGGATCAACCGAGTCCCC
131 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* * * * **
11375158 CTCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAA
196 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTG-TCTGGTCTGATCTTAGACTGGGAATGAA
* * * *** * *
11375223 CTCCGTATGCCTAAGCCAACCGACGAAATGAGCG-GGCGATCAGGCTACCGGGCACTATGCCAGC
260 CTCCGTATGCCTAAGCCAACCGATGAAACGAGCGCGG-GA--GGGCGGGCGGGCACTACGCCGGC
*
11375287 CAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
322 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*** * * *
11375352 ATTTCTATGTGCCAATGCCATTTTGATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCAT
387 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * * ** * *
11375417 ATGAAGTTTCATGGCAAAACGACTTGTCTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTCC
452 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC
* * * *
11375482 GAGA-TTTTTAAAAATTTTTCAGACGGAGTTTTGGCCCCAAACT
517 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
11375525 CGAAGTGTAC
Statistics
Matches: 11540, Mismatches: 1775, Indels: 1261
0.79 0.12 0.09
Matches are distributed among these distances:
852 257 0.02
853 179 0.02
857 4 0.00
859 7 0.00
860 225 0.02
861 8 0.00
862 9 0.00
863 181 0.02
864 414 0.04
865 239 0.02
866 109 0.01
867 258 0.02
868 31 0.00
869 456 0.04
870 184 0.02
871 26 0.00
872 34 0.00
873 173 0.01
874 158 0.01
875 203 0.02
876 130 0.01
877 93 0.01
878 271 0.02
879 2 0.00
880 7 0.00
881 8 0.00
882 6 0.00
883 9 0.00
884 25 0.00
885 419 0.04
886 256 0.02
887 259 0.02
888 38 0.00
889 199 0.02
890 76 0.01
891 154 0.01
892 317 0.03
893 709 0.06
894 213 0.02
895 498 0.04
896 222 0.02
897 241 0.02
898 67 0.01
899 137 0.01
900 47 0.00
901 403 0.03
902 652 0.06
903 108 0.01
904 150 0.01
905 735 0.06
906 401 0.03
907 199 0.02
908 59 0.01
909 620 0.05
910 29 0.00
911 8 0.00
912 3 0.00
913 5 0.00
914 1 0.00
915 8 0.00
916 11 0.00
917 12 0.00
918 12 0.00
919 4 0.00
920 7 0.00
921 10 0.00
922 1 0.00
923 15 0.00
924 9 0.00
925 10 0.00
926 22 0.00
927 8 0.00
928 17 0.00
929 8 0.00
930 12 0.00
931 14 0.00
932 17 0.00
933 11 0.00
934 6 0.00
935 3 0.00
936 5 0.00
937 2 0.00
938 6 0.00
939 18 0.00
940 14 0.00
941 7 0.00
942 8 0.00
943 6 0.00
944 6 0.00
945 19 0.00
946 3 0.00
947 7 0.00
948 5 0.00
949 9 0.00
952 2 0.00
953 1 0.00
954 2 0.00
955 3 0.00
956 6 0.00
957 9 0.00
958 6 0.00
959 2 0.00
960 2 0.00
962 6 0.00
965 2 0.00
966 1 0.00
967 2 0.00
968 4 0.00
969 4 0.00
970 2 0.00
971 6 0.00
972 1 0.00
974 10 0.00
975 3 0.00
976 8 0.00
977 7 0.00
978 13 0.00
979 24 0.00
980 32 0.00
981 19 0.00
982 2 0.00
983 10 0.00
984 5 0.00
985 1 0.00
987 1 0.00
990 2 0.00
991 7 0.00
992 6 0.00
993 8 0.00
994 8 0.00
995 11 0.00
996 4 0.00
997 6 0.00
998 5 0.00
999 12 0.00
1000 2 0.00
1001 1 0.00
1002 4 0.00
1003 3 0.00
1004 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGTCTGGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGATGAAACGAGCGCGGGAGGGCGGGCGGGCACTACGCCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGA
TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCG
CCGGTCAGGTTCTTCGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGC
Found at i:11365208 original size:26 final size:26
Alignment explanation
Indices: 11365172--11365224 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11365162 CTGGTCTGAT
*
11365172 CTTAGATTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
**
11365198 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
11365224 C
1 C
11365225 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:11367134 original size:17 final size:18
Alignment explanation
Indices: 11367112--11367157 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
11367102 TGGCATGCAC
*
11367112 AAAAAATAAATTCAGCTA
1 AAAAAATAAATTCAACTA
11367130 AAAAAATAAATTCAACT-
1 AAAAAATAAATTCAACTA
11367147 AAAAAATAAAT
1 AAAAAATAAAT
11367158 CGTTGGAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 11 0.41
18 16 0.59
ACGTcount: A:0.67, C:0.09, G:0.02, T:0.22
Consensus pattern (18 bp):
AAAAAATAAATTCAACTA
Found at i:11367957 original size:26 final size:26
Alignment explanation
Indices: 11367928--11367980 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11367918 CCGATCCGAT
*
11367928 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11367954 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11367980 C
1 C
11367981 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11368852 original size:26 final size:26
Alignment explanation
Indices: 11368814--11368866 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11368804 CCAATCTGAT
*
11368814 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
11368840 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
11368866 C
1 C
11368867 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:11369735 original size:26 final size:26
Alignment explanation
Indices: 11369706--11369756 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
11369696 CCGGTCCGAT
11369706 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11369732 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
11369757 TCCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11370644 original size:26 final size:26
Alignment explanation
Indices: 11370615--11370667 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11370605 CCGGTTCGAT
*
11370615 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11370641 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11370667 C
1 C
11370668 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11370733 original size:909 final size:901
Alignment explanation
Indices: 11367200--11375524 Score: 10363
Period size: 909 Copynumber: 9.4 Consensus size: 901
11367190 TGGTGATGCA
* * * *
11367200 GCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGAC-A
1 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
** * * * *
11367264 AA--A-----CAAGC--G-GGAGGGCACTATGCCGGCCAGAGAGACGAGATGCGCAAGTCGTGGA
66 AACGAGCGGGCGGGCGGGCGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
11367319 TCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCGTGCCAATTCCATTTTTATA
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* ** *
11367384 GCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTGAGACGACTGGTT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * ** * * * *
11367449 TTTTAATTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAGATTTTTTTGCAAGGA
261 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* ** *
11367514 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGAAATGCATAAAAAAATTCAG
326 GTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
11367579 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTGT-AGACACT
391 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TCAGACACT
* * * *
11367643 TTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGTTGTGAGTTCTCAA
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
11367708 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
520 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
11367773 ACACACCCCCC--CCGGCCCCCGATAGTCGATACCCCAATGCCG-TCGGTTAGGTTCTCCGGCGA
585 GCACACCCCCCGGCC--CCCCCGATCGTCGAAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGA
* ** ** ** * * *
11367835 TGCCCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGTACATACCCGAGCCTAGCATGT
647 TGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
*
11367900 GCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
712 GCTGTCGTAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * * *
11367965 AATGAACTCCATATGCCTAAGTCAACCAACGAAATGAGCGTACGGGCGCTCATCCAGCCAGAGGG
776 AATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGG
* * * * *
11368030 G-TGGATGCGCAAGTCGGGGCTCAATCGGGTCCCCCTCTGCGTGCTACCAATCCTACTGCC
841 GCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
* * * * * *
11368090 ACAACCCTCGATCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAACCAACCAAC-A
1 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
11368154 AA--A-------------CGGCGGGCACTACGCCGGCTAGGGAGACGGGATGCGCAAGCCGTGGA
66 AACGAGCGGGCGGGCGGGCGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
*
11368204 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
*
11368269 GCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * * *
11368334 TTCTATTTTTCATAATTTTCAAAACTTTTGATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA
261 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * ** *
11368399 GTTCTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGTAAAAAACTTCAG
326 GTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
11368464 CTACAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACT
391 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACT
* * * *
11368529 TTAATGGCTACTCGTAGCAAACCTGTAAAATCTCAAATGCACTTTAA-GGGGT-TAGAGTTCTCG
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT-GAGTTCTCA
*
11368592 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTG
519 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * ** * ** * *
11368657 CGCACACCCCCCCGACCCTCCCGATCCCCGAAACCCCAATGTCGCCAGTCAGGTTCTTCGACGAT
584 CGCACA-CCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGAT
* * * *
11368722 GCTTCGGTGATGGTGCCCCGGC-AAGAAAAATGTGGTACCAACACATGCCTCGAGCCCAGCATGT
648 GCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCC-CGAGCCCAGCATGT
* * * *
11368786 GCTGTCGTAACCCTCGGTCCAATCTGATCTTAGACTAGGAATGAACTCCTTATGCTTAGACTGGG
712 GCTGTCGTAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
11368851 AATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGCGGGCCAGAGGG
776 AATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGG
* * * * * * *
11368916 GTGGGATGCACAAGTGGGGGAT-TAGCCGGGTCCCCCTCTGCGTGCTATCGATCCTGTTGCC
841 GCGGGATGCGCAAGTCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
* * * * * * *
11368977 GCAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAATTCTGTATGCCTAAGCCAACTGATGA
1 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
11369042 AATGA--------GCGGGC-G-GGGCACTACGCC-AGCCAAAGAGACGGGATGCACAAGCCGTGG
66 AACGAGCGGGCGGGCGGGCGGCGGGCACTATGCCGA-CCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * * *
11369096 ATCGATAAGGTGGTAGGTGAGTTTAGGCTCATCTTCATAGTTCTGCATGCCAATGCCATTTTTAC
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * * *
11369161 GACTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCACGACGACTCAT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
11369226 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTGTTT-AGAAG
260 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT-TTTCGGAAG
*
11369290 GAGTTTTGGCCCCAAACTTGGTAG-TCGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAAT
324 GAGTTTTGGCCCCAAACTTGGTAGAT-GTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAAT
*
11369354 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
387 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
11369419 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
452 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
11369484 CAAGGTTTGATGAGGAATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
517 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
11369549 TGCGCACACCCCCCGGCCCCCCCCATCGCCGGAACCCCAATGCCG-TCGGTCAGGTTCTCTGGTG
582 TGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCG
* * * * *
11369613 ATGCTCCGGTGATGGT-CCCCGATGAAGAAAAATGCGGCACCACCACATGCCCGAGCCTAGCAAG
646 ATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
11369677 TGCTGCCATAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
711 TGCTGTCGTAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * *
11369742 GAATGAACTCCGTATTCCTAAGTCAACCCACAAAATGAGCGTAC-GGACGCTCAGCTGCCCAGAG
775 GAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG-CGCTCAGCCGGCCAGAG
* * ** * * *
11369806 GGGCGGGATGCGCAAGCCGGGGACCGGCCGGGTCCCCCTCTGCATGCTATCAATCCTGCTGCC
839 GGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
* * * *
11369869 GCAA-CCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACCGATGA
1 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
*
11369933 AACGAGCGGGCGGCGGGCGGGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCA
66 AACGAGC--G-GGCGGGCGGGC-GGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCG
* *
11369998 TGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
127 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
*
11370063 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACT
192 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
11370128 TGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGA
257 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
11370193 AGGAGTTTTGGCCCCAACCTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAT
322 AGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
11370258 TCAGCTAAAAACTTGAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
387 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
11370323 ACTTTAATGGCTACTGGTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
452 ACTTTAATGGCTACT-G--GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
11370388 TCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATC
514 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
11370453 ATGTGCGCACACCCCCCCGGGCCCCTCGTTCGTCGAAACCCCAATGCCGCTGGTTAGGTTCTCCG
579 ATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCTGGTCAGGTTCTCCG
* * * * * * *
11370518 ACGAAGCTTCGGCGATGGTGCCCCGACGAAAAAAAATGTGGCACCAGCACATGCCTGAGCCTAGC
643 GCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* ** * *
11370583 AGGTGCTGTCACAACCATCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
708 ATGTGCTGTCGTAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * ** *
11370648 TGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCTTGTAGGCAATCAGCTGGCCAG
772 TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAG
* ** * ** *
11370713 AGGGGCGAGATGATCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACC
837 AGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
* * * * * *
11370778 GTAACCCTC-AGTCC-ATTTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACA
1 GCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* *
11370841 AAACGAGCGGGC-GGCGGGCGGGCACGCGAGCACTACGCC-AGCCAGAGAGACGGGATGCACAAG
65 AAACGAGCGGGCGGGCGGGC-GG--CG-G-GCACTATGCCGA-CCAGAGAGACGGGATGCGCAAG
* * * * *
11370904 TCGTGGATAGATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTGTGAGCCAATGCCAT
124 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* *
11370969 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTTACGTGAAGTTTCATGGCAAGACG
189 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
11371034 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGACTTTTTAAAATATTTTT
254 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTT
*
11371099 -GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCGTGCACAAAA
318 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
11371163 AAATTCAGCAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
383 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
11371228 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAG
448 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
11371293 TTCTCAAGGTTTGATGAGAGATAGGGGCCCCATATAAGGGCCAAGTACCAGCACCCACCACACAT
513 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
11371358 CATG-GCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
578 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCTGGTCAGGTTCTCCG
* ** * * * **
11371421 GTGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGTGGCTCCAACACATGCCCGAGCCCATA
643 GCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
*
11371486 ATGTGCT-ACGTAA-CC-C--T-CG---G-TC-----C-----A-G---TCCG-AT-CTTAGACT
708 ATGTGCTGTCGTAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * *
11371525 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
773 GGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGA
* * * * *
11371590 GGGGCGGGATGCGTAATTCGGTGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
838 GGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
* * * * *
11371654 GCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATACCTAAGCCGACCGACGA
1 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
11371719 AACGA----GCGGGCGGGCGGAGGGCACTAGGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
66 AACGAGCGGGCGGGCGGGCGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
* * **
11371780 TCGATAGGCTGGTAGGTGGATTTAGGCACAT-TGTCATATTTCTATGTGCCAATGCCATTTTTAT
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCT-TCATATTTCTGCGTGCCAATGCCATTTTTAT
* * *
11371844 GGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGATGACTCGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
11371909 TTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCCGGATTTTTTAAAATTTTTTTGGAAGG
260 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
11371974 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTAGCATGCACAAAAAAATTCA
325 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
11372039 GCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
11372104 TTAATGGCTACTAGTAGCAAACCTATTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCA
455 TTAATGGCTACTGGCAGCAAACCT-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
11372169 AGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
519 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
11372233 CGCACACCCCCCGG-CCCCCTGATCGCCGGAACCCTAATGCCGTTGG-CTAGGTTCTCCGGCGAT
584 CGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCTGGTC-AGGTTCTCCGGCGAT
** ** *
11372296 GCTCCGGTGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATATG
648 GCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* ** * * * * *
11372361 CTGCCACAACCCTTGGTCTAGTCCGATCTTGGACTGGGAATGAACTGCATATGCTTAGACTGGGA
713 CTGTCGTAACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
11372426 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCACTCAGCCGGCCAGAGGGG
777 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGG
* * * * *
11372491 CGGGATGCGCAAG-CTGAGGATCGGTCAGGTCCCCCTCTGCGTGTTACCGATCCTACTGCC
842 CGGGATGCGCAAGTC-GGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
* * *
11372551 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCTACGA
1 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * * * *
11372616 AACGAGCGGGTGGACGGGCGGGCGGGCACTAGGTCGGCCAGAGAGATGGGATGCGTAAGCCATGG
66 AACGAGCGGGCGGGCGGGC-GGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
11372681 ATCGATAGGCTGGTAGGTGGATTTAGGCACATCATCATATTTCTGCGTGCCAATGCCATTTTGAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * * * *
11372746 GGCTTGTAAGTTCATACAATGGTCCCTTAAACCTTCACGTGAAATTTCGTGGCAAGATGACTCGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
11372811 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCTGAATTTTTTAAAATTTTTTCGGAAGG
260 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
11372876 AGTTTTGGCCCCAAAC-T--TAGACGTGATCCTTGTATTTTTGTTGGCATGAAAAAAAAAATTCA
325 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
11372938 ACTAAAAACTC-ATAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACAC
390 GCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
11373002 TTTAATGGCTACT-GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
*
11373066 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC-G--------GCAC-CCAT-T-
519 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
11373119 -G--CA--------------C-A---TC--AACCCTAATGCCG-TCGGTTAGGTTCTTCGGCGAT
584 CGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGAT
** *
11373160 GCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATTTG
648 GCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
** ** * * * * * *
11373225 CTACCACAGCCCTCGGTCCATTCCAATATTAGACTGGGAATGAACACCATATGCTTAGACTGGGA
713 CTGTCGTAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
11373290 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCAAGAGGGG
777 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGG
* * * *
11373355 TGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCC
842 CGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
* * *
11373415 AG-AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAATCGAAG
1 -GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * * * *
11373479 AAATGAGCGTGCGTGC--G-AGCGGGCATTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGG
65 AAACGAGCGGGCGGGCGGGCGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* ** *
11373541 ATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTCTTTGTGCCAATACCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * *
11373606 GGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCAT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * ** * *
11373671 TTTTTCTTTTTCATGATTTTCAAAACTTTTAACGGTTCAGGATTTTTTAAAA-TTTTTCTGGAAG
260 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GGAAG
* *
11373735 GAGTTTTGGCCCCAAACTCGGTAG-TCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
324 GAGTTTTGGCCCCAAACTTGGTAGAT-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
11373799 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACA
388 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
11373864 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
453 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
11373929 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
518 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
11373994 GCGCACACCCCCACCCGGCCCCCTCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAGC
583 GCGCACA--CCC-CCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCTGGTCAGGTTCTCCGGC
* ** * * *
11374059 AATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCTCGAGCCTAGCAT
645 GATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
*
11374124 GTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
710 GTGCTGTCGTAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
** * *
11374189 GGAATGAACTCTGTATGCCTAAGTGAACCCACGAAACGAGCGTGC-GGACGCTCAGCCAGCCAGA
774 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG-CGCTCAGCCGGCCAGA
** * * * *
11374253 GGGGCGGGATGCGCAAGTCTAGGATCGACCAGGTCCCCCT-T---TG-T---G-T--TACTACC
838 GGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
* * * * * *
11374306 GCAACCCTCGATCTGGTCTGATCTTAGACTGGAAATGAACTCTGTATGCCTGAGCCAACCTACCA
1 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
11374371 AACGAGCGGGCGGACGGGCAGGCGGGCACTTTGCCGACCAGAGAGATGGGATGTGCAAGCCGTGG
66 AACGAGCGGGCGGGCGGGC-GGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
11374436 ATCGAGAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
**
11374501 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAAT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
11374566 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
260 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
11374631 AGTTTTGGCCCCAACCTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCA
325 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
11374696 GCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATTTTAAAAAAGTGTCCCCATTTCAGACACT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * ** * *
11374761 TTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCATGAAGGGAGCATTAGTTCTCGA
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* *
11374826 GGTTTAATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
520 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
11374891 GCACATCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCT-ATCACGTTCTCCGGCGAT
585 GCACA-CCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCG-CTGGTCAGGTTCTCCGGCGAT
* * * * * * * * *
11374955 GCTCCGATGATGCTGACTCGACGAGGAAAAATGAGACACCAGCAAATGCCCGAGCCCAGCACGTG
648 GCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
11375020 CTGTCGTAA-CC-C---ACG---G----T---CT--G---G---TCCG-AT-ATTAGACTGGGAA
713 CTGTCGTAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
11375060 TGAACTCCATATGCCTAAGTTAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGCCCAGAGGGGC
778 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGC
* * * * *
11375125 GGGATGCGCAAGTCGAGGATCAACCGAGTCCCCCTCTACGTGCTACCGATCCTGCTGCC
843 GGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
**
11375184 GCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* ** * ** *
11375249 AATGAGCGGGCGATCAGGCTACCGGGCACTATGCC-AGCCAGAGAGACGGGATGCACAAGCCGTG
66 AACGAGCGGGCGGGCGGGC-GGCGGGCACTATGCCGA-CCAGAGAGACGGGATGCGCAAGCCGTG
** *
11375313 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTGA
129 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* ** * *
11375378 TGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCATATGAAGTTTCATGGCAAAACGACTTG
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** ** * * * * * *
11375443 TCTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTCCGAGA-TTTTTAAAAATTTTTCAGACG
259 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
11375507 GAGTTTTGGCCCCAAACT
324 GAGTTTTGGCCCCAAACT
11375525 CGAAGTGTAC
Statistics
Matches: 6528, Mismatches: 727, Indels: 373
0.86 0.10 0.05
Matches are distributed among these distances:
859 6 0.00
860 220 0.03
862 1 0.00
863 113 0.02
864 415 0.06
865 3 0.00
866 1 0.00
867 99 0.02
868 11 0.00
869 403 0.06
870 161 0.02
871 6 0.00
872 4 0.00
873 7 0.00
874 10 0.00
875 4 0.00
876 129 0.02
877 89 0.01
878 270 0.04
879 2 0.00
880 2 0.00
881 3 0.00
882 1 0.00
883 2 0.00
884 2 0.00
885 416 0.06
886 258 0.04
887 101 0.02
888 9 0.00
889 4 0.00
890 61 0.01
891 131 0.02
892 189 0.03
893 504 0.08
894 149 0.02
895 459 0.07
896 12 0.00
897 240 0.04
898 45 0.01
899 114 0.02
900 3 0.00
901 13 0.00
902 470 0.07
903 97 0.01
904 112 0.02
905 262 0.04
906 115 0.02
907 121 0.02
908 60 0.01
909 606 0.09
910 13 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGGCGGGCGGGCGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCT
CCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
TCGTAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGG
ATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
Found at i:11373282 original size:26 final size:26
Alignment explanation
Indices: 11373253--11373304 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11373243 CATTCCAATA
11373253 TTAGACTGGGAATGAACACCATATGC
1 TTAGACTGGGAATGAACACCATATGC
* *
11373279 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACACCATATGC
11373305 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAATGAACACCATATGC
Found at i:11374190 original size:26 final size:26
Alignment explanation
Indices: 11374154--11374206 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11374144 CCGGTCCGAT
11374154 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11374180 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11374206 C
1 C
11374207 CTAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11374868 original size:895 final size:888
Alignment explanation
Indices: 11373126--11375526 Score: 3047
Period size: 895 Copynumber: 2.7 Consensus size: 888
11373116 ATTGCACATC
* * * * **
11373126 AACCCTAATGCCGTCGGTTAGGTTCTTCGGCGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAA
1 AACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAA
* ** ** * ** *
11373191 TGTGGCACCAGCACATGCCCGAGCCCAGCATTTGCTACCACAGCCCTCGGTCCATTCCAATATTA
66 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATATTA
11373256 GACTGGGAATGAACACCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
131 GACTGGGAATG-A-ACC-TATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGA
* * * * * *
11373321 AACGAGCGTACGGGCGCTCAGCCGGCAAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTC
192 AACGAGCGTGC-GGCGCTCAGCC-GCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGA-CCGGT-
*
11373386 CCCCTCTGCGTGCTGCTGATCCTGCTGCCAG-AACCCTCGATCCGGTCTGATCTTAGACTGGGAA
253 CCCC-CT-C-TG-TGCTGAT-CTACTGCC-GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAA
* * * * *
11373450 TGAACTCCGTATGCCAAAGCCAATCGAAGAAATGAGCGTGCGTG-C-G-AGCGGGCA-TTACGCC
312 TGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCG-GACGGCAGCGGGCACTT-TGCC
* * *
11373511 GGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGATTAGGCACATCTT
375 GACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
11373576 CATATTTCTTTGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTT
440 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
11373641 CAAGTGAAGTTTCATGGCAAGACGACTCATTTTTTCTTTTTCATGATTTTCAAAACTTTTAACGG
505 CAAGTGAAGTTTCATGGCAAGACGACTAATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGG
*
11373706 TTCAGGATTTTTTAAAATTTTTCTGGAAGGAGTTTTGGCCCCAAACTCGGTAGTCATGATCCTTG
570 TTCGGGATTTTTTAAAATTTTTC-GGAAGGAGTTTTGGCCCCAAACTCGGTAGTCATGATCCTTG
*
11373771 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
634 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAATTTGTGACCA
* *
11373836 TTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
699 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCA
* * * ** * *
11373901 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
764 AATGCTCATGAAGGGAGCATGAGTTCTCGAGGTTTAATGAGAGATAGGGGGCCAATATAAGGGCC
*
11373966 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCACCCGGCCCCCTCGATCATCGA
829 AAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCC-CCCGGCCCCCCCGATCATCGA
* * * * *
11374028 AACCCCAATGCCGCCGGTCAGGTTCTCCAGCAATGCTCCGACGATGGTGCCCCGACAAAGAAAAA
1 AACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAA
* * *
11374093 TGTGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTA
66 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATATTA
*
11374158 GACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACCCACGA
131 GACTGGGAATGAAC-C--TATGCTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGA
*
11374223 AACGAGCGTGCGGACGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCTAGGATCGACCAGGTC
192 AACGAGCGTGCGG-CGCTCAGCC-GCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGACC-GGTC
* * *
11374288 CCCCT-T-TG-TG-T-TACTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGAAATGAACTC
254 CCCCTCTGTGCTGATCTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * * *
11374348 TGTATGCCTGAGCCAACCTACCAAACGAGCGGGCGGACGGGCAGGCGGGCACTTTGCCGACCAGA
319 CGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGAC-GGCA-GCGGGCACTTTGCCGACCAGA
* * * *
11374413 GAGATGGGATGTGCAAGCCGTGGATCGAGAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTT
382 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*** *
11374478 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
447 CTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGA
**
11374543 AGTTTCATGGCAAGACGACTAATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA
512 AGTTTCATGGCAAGACGACTAATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGA
* * *
11374608 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAACCTTGGTAGAT-GTGATCCTTGTATTTT
577 TTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTCGGTAG-TCATGATCCTTGTATTTT
* *
11374672 TGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATTTTAA
640 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATTTGAA
11374737 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCT
705 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCT
*
11374802 CATGAAGGGAGCATTAGTTCTCGAGGTTTAATGAGAGATAGGGGGCCAATATAAGGGCCAAGTAC
770 CATGAAGGGAGCATGAGTTCTCGAGGTTTAATGAGAGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * *
11374867 CAGCACCCATCGCACATCATGTGCGCACATCCCCCCGGCCCCCCCGATCGTCGG
835 CAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGA
** * * * * *
11374921 AACCCCAATGCCGTCTATCACGTTCTCCGGCGATGCTCCGATGATGCTGACTCGACGAGGAAAAA
1 AACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAA
* * * * * *
11374986 TGAGACACCAGCAAATGCCCGAGCCCAGCACGTGCTGTCGTAACCCACGGTCTGGTCCGATATTA
66 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATATTA
* *
11375051 GACTGGGAATGAA-C--T-C-----C---------A----TATGCCTAAGTTAACCCATGAAACG
131 GACTGGGAATGAACCTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACG
*
11375094 AGCGTGCAGGCGCTCAGCCGCCCAGAGGGGCGGGATGCGCAAGTCGAGGATCAACCGAGTCCCCC
196 AGCGTGC-GGCGCTCAGCCG-CCAGAGGGGCGGGATGCGCAAGTCGAGGATCGACCG-GTCCCCC
* **
11375159 TCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAAC
258 TCT--GTGCT---GAT-CTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAAC
* *
11375224 TCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGC-GATCAGGCTACCGGGCACTATGCC-AGC
317 TCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGA-C-GGC-AGCGGGCACTTTGCCGA-C
*
11375287 CAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
378 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
11375352 ATTTCTATGTGCCAATGCCATTTTGATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCAT
443 ATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-
* ** * ** * *
11375417 A-TGAAGTTTCATGGCAAAACGACTTGTCTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTC
507 AGTGAAGTTTCATGGCAAGACGACTAATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTT
* * * *
11375481 CGAGATTTTTAAAAATTTTTCAGACGGAGTTTTGGCCCCAAACTCG
572 CGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTCG
11375527 AAGTGTACAA
Statistics
Matches: 1313, Mismatches: 154, Indels: 89
0.84 0.10 0.06
Matches are distributed among these distances:
866 2 0.00
867 80 0.06
868 3 0.00
871 2 0.00
872 2 0.00
875 1 0.00
876 1 0.00
877 30 0.02
878 274 0.21
879 1 0.00
881 1 0.00
886 1 0.00
887 1 0.00
890 2 0.00
891 71 0.05
893 142 0.11
894 6 0.00
895 456 0.35
896 9 0.01
897 1 0.00
900 4 0.00
901 10 0.01
902 213 0.16
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (888 bp):
AACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAA
TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATATTA
GACTGGGAATGAACCTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGCGCTCAGCCGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGACCGGTCCCCCTCT
GTGCTGATCTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAATGAGCGGGCGGACGGCAGCGGGCACTTTGCCGACCAGAGAGACGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATG
GCAAGACGACTAATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAA
ATTTTTCGGAAGGAGTTTTGGCCCCAAACTCGGTAGTCATGATCCTTGTATTTTTGTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCATGAAGGGAG
CATGAGTTCTCGAGGTTTAATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
ACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGA
Found at i:11376757 original size:26 final size:26
Alignment explanation
Indices: 11376728--11376778 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11376718 GGTTAGATCA
11376728 TAGACTAT-GAATGAACTCCGTATGCT
1 TAGACT-TGGAATGAACTCCGTATGCT
11376754 TAGACTTGGAATGAACTCCGTATGC
1 TAGACTTGGAATGAACTCCGTATGC
11376779 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
TAGACTTGGAATGAACTCCGTATGCT
Found at i:11377655 original size:26 final size:26
Alignment explanation
Indices: 11377618--11377671 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
11377608 GGTCTGATCT
*
11377618 TAGACTGTGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
11377644 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
11377670 TA
1 TA
11377672 TGTTAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:11378560 original size:26 final size:26
Alignment explanation
Indices: 11378524--11378576 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11378514 GTCTGATCTA
*
11378524 AGACTGTGAATGAACTCCGTATGCCT
1 AGACTGGGAATGAACTCCGTATGCCT
11378550 AGACTGGGAATGAACTCCGTATGCCT
1 AGACTGGGAATGAACTCCGTATGCCT
11378576 A
1 A
11378577 TGTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCCT
Found at i:11378831 original size:905 final size:904
Alignment explanation
Indices: 11375853--11388842 Score: 11781
Period size: 905 Copynumber: 14.3 Consensus size: 904
11375843 CTAGTCCAAT
** ** *
11375853 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGTGAAACGAGCAAGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * ** *
11375918 CGGCCAGAGGGGCAGGATGCGCAAACTAGGGATCGATCGGGTCCCCCTCTGCATGCTATCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
* * ** *
11375983 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAACCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ***
11376048 CCGACG-AA--A-CGAGCGGACGGGCGGGCGGGCACTACG-CTGACTAGAGAGACGGGATTTACA
196 CCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCA
* * *
11376108 AGCTGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
11376173 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * **
11376238 CGACTCGTCTTCTCTTTTTCAGGA-TTTTCAAACCTTTTTACGGTTCAGGA-TTTTTAAAATTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTACGGTTTGGGATTTTTTAAAATTTT
* * * *
11376301 TTCGGAAGGAGTTTTGGCCCCAATCTTGGTAGATGTGATCCTTGTATTTTTTTTGGGATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
11376366 AAAAATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCAGTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* ** *
11376431 TTAGACACTTTAATGGCTACTGATAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
11376496 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCTTCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
11376561 ATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGATCAGGCTCT
714 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * * *
11376626 CTGGC-ATTGCTCCGATGATGGTGCCCCGACAAAGAAAAATGAGACACCTGCACATGCTCGAGCC
779 CCGACGA-TGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * ** * **
11376690 CAGTATGTGCTACCGCAACCCTCGGTCCGGTTAGATCATAGACTATGAATGAACTCCGTATG
843 CAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
11376752 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
11376817 CAACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTACATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
* * * *
11376882 TACTGCCGCAACCCTCGGTCTGATCTTATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-C--
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
11376944 CC-AC----CGA-CGA---AACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCCA
196 CCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG-CA
* * **
11377000 A-CCGTGAATCGATAGGGTGGTGGGTGGGTTT-GGCACATCTTCATATTTCTATATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
11377063 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGG
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * * *
11377128 CGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGTGATTTGGGATTTTGTCAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
* * *
11377193 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCATAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
11377258 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
11377323 CAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * **
11377388 GTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTATCGGCACCCCCCGCACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
11377453 TCATTTGCGCACA-CCCCCCGGCCCCCCCAATCGCCAGAACCCCAATGTCGTCGGTCAAGTTCTC
715 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* ** * *
11377517 CGACGATGCTCCAATGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCTCGAGCCTA
780 CGACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
11377582 GCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGTGAATGAACTCCGTATG
845 GCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
11377642 CCTAGACTGGGAATGAACTCCGTATGCCTATGTTAACCCACGAAACGAGCATGCCGACGCCCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** ** * * * ** *
11377707 CGACCAGAGGCACGATATGCACAAGCCGAGGATTGGTCGGGTCCCCCTCTGTGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
* * * * * * * *
11377772 TACTGCCACAACCTTTGGTCCAGTCTGATCTTAGACAGGGAATGAACTCCATATTCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
11377837 CCGACGAAACGAGCGGGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAA
196 CCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
11377902 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
11377967 TTTTTTTGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
11378032 GACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTTGGGACTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
* * * *
11378097 CGGAAGGCGTTTTGGCCACAAACTTGGTAGATGTGATCATTGTATTTTTGTTGGCATGCACAAAA
456 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
11378162 AAATTCAGCTAAAAAGTCAAAGTGTACACGATTTTGTGACCA-TTGCAAAACAGTGTCGCCATTT
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTT
* * *
11378226 CAGAGACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
11378291 GTTCTCAAGGTTTAATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
11378356 TCATGTGCGCACACCCCCCTCGGCCCCCCCGATCATCGGAACCCTAATGCTGTCGGCCAGCTTCT
715 TCATGTGCGCACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
** *
11378421 CCGACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCAACACCAGCATATGCCCGAGCCC
779 CCGACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
11378486 AGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTAAGACTGTGAATGAACTCCGTATG
844 AGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
11378547 CCTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAACGAGCGTGCCGGTGCCCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * ** * ** * * *
11378612 CGGCCAGAGGGGCGATATGCACAAGCCGGGGATCGACCGAGTCCCCCTCTGTGTGCAGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
* * *
11378677 TGCTGCCGCAACCCTCAGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
11378742 CTGACGAAACGAGCGAGCGGACGAACGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGTAA
196 CCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
***
11378807 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
11378872 TTTTTTTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
11378937 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
* * *
11379002 CGGAAGGAGTTTTGGCCCCAAACTTGGTATATGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
456 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
11379067 AAATTCAGCTAAAAAGTCGAAGTGTACACGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTC
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
** * *
11379132 AGACACTTTAATTACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAAGGGGTGTGAG
586 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
11379197 TTCTCGAGGTTTAATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACAT
651 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * * * *
11379262 CATGTGCGAACACCCCACTGACCACGCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCC
716 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
** * * *
11379327 GGTGATGCTCTGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
781 GACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * ** * *
11379392 CATGTGCT-ATCACAACCCTCGGTCTAGTCTGATCTTAGACTGCGAATGAACTCCGTATG
846 CATGTGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
11379451 CTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
11379516 CGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCGGTTGGGTCCCCCTCTACATGCTGATGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
* * * * *
11379581 TGCTACCGCAACCTTCAGTCCTGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
11379646 CCGACGAAACAAGCG-G-GCA-G-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAA
196 CCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
11379707 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTTTGCATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
11379772 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * **
11379837 GGCTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
* *
11379902 CGGAAGGAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTGTTGGCATG-A-AAAA
456 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
11379965 AAATTCAGTTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTC
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
11380030 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AGGGGGTGTGAG
586 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
11380094 TTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGAACAT
651 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * * * *
11380159 CAGGTTCGCACACCCCCCTCGGCCCCCCCGATTGTCGGGACACCAATGCAGCCGGTAAGGTTTTC
716 CATGTGCGCACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * *
11380224 C-AGTGATGCTCC-AGTGATGGTGCCCCGATGAAGAAAAATACGGTACCAGCACATGCCCGACCC
780 CGA-CGATGCTCCGA-TGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* ** * * *
11380287 CAGCATGAGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT-
843 CAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * ** *
11380348 CATTAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCACAAAATGATTGTGCGGGGTGCTCA
1 C-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCA
* ** ** *
11380413 GCAGGCCAGAAAGGCACGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGAT
64 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGAT
* ** * ** * **
11380478 CCTGCTACCGCAACCCTCCATCCGCTCCAATCTTAAACTGGGAATGAACTCCGTATGCCTAAAAC
129 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * * * * * *
11380543 AATGGACAAAACGAGCGGGCGGGCGGGCGGACAGGCACTACGTCGGCTAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * * * *
11380608 AATCCGTGGATCGATAGGGTGGTTGGTGGGTTT-GGCACATCTTCCTATTTTTGCATGCCAAAGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
11380672 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAGGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * ** *
11380737 ATGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGATTCAGGATTTTTTTAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGA-TTTTTTAAAATTT
* * * * * *
11380802 TTTCAGAAGGCGTTTTGGGCCTAAACTTGGTAGGCATGATCCTTGTATTTTTGTTGGCATGCACA
453 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
11380867 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTA-
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
11380931 TTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGTTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
11380996 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCA
648 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** *
11381061 CATCATGTGCGCACA--CCCCCGAG--CCCAC-ATCGTCGGAACCCTAATGATGCCGGTCAGGTT
713 CATCATGTGCGCACACCCCCCCG-GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
*
11381121 CT-C--CG--G-T--GATGA---TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
777 CTCCGACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
11381175 CCAGCAAGTGCTG-TCGCAACCCTCGGTCCGATCTGATCCTT-GA-TGGGAATGAACTCCATATG
842 CCAGCATGTGCTGCT-GCAACCCTCGGTCCGGTCCGAT-CTTAGACTGGGAATGAACTCCGTATG
* * *
11381237 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** ** ** *
11381302 CGACCGGAGGTGCGGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCTAATT
66 CGGCCAGAGGGGC-GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATC
*** ** * * * *
11381367 CTGCTGCTATAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGCACTCTGTATGCCTAAGTCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
11381432 ACCCATGAAAC-A---AGC--A--TGC-AGC--GCTC-A-GCCAGCCAGAG-GAGCGGGATGCGC
195 ACCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGA-CGGGATGCGC
* * * * * ** ** * ** ** * **
11381483 AAGTCGGGGATTGGTCGGGTCCCCCTCTGTGAGCTGTTGATCCTGATGTTGCA-A-CCCTTG-AT
259 AAGCCGTGGATCGATAGGGT---GGTAGGTG-G--GTTTAGGCACATCTT-CATATTTC-TGCAT
*** * * * * * ** * * ** *
11381545 -CTGGT-CCAATCTTA-GACTAG-GAATGAACTCCGTAT-G--CC-TAAGCCAAC-CAATGAA--
316 GCCAATGCCATTTTTATGGCTTGTAAATTCA-TAC-AATGGTCCCTTAAGCCTTCAC-GTGAAGT
* * ** *** * *** * **** * *** ** *
11381599 ---ACGAGCAAG-CGGGCGGGTGGGCGGGCACTTCGCCAGCCA-GAGAGACAGGATGCACGAG-C
378 TTCATG-GCAAGAC-GACTCGTTTTC---TA-TTTTTCA-CGATTTTTGAAACTTTTTACG-GTT
* ** * *** ** * * * * * ** **
11381658 CGTGGA---TCGATAGGGTGGTAGG-TGG-G-TTTGGGCAC-ATCTTCTTATTTC-TGCATGCCA
435 TG-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA-GACGTG-AT-CC-
* * * * * * * * ** *
11381715 ATGCCATTTTT-ATGGCTTGTA-AATTCATACAATGGTC-CCTTAAGCCTTC-ACGTG---AAG-
495 TTG-TATTTTTGTTGGCATGCACAA---A-AAAAT--TCAGCTAAAAAC-TCGAAGTGTACAAGA
* *** ** * **** * * * *
11381772 TTTCATGGCAAGACGGCTCATTT--TTTATTTTTTTTTATTTTCA-AAACTTTTTACGG-T--TC
552 TTT--T-G--TGA---C-CATTTGAAAAAAGTGTCCCCA-TTTCAGACAC-TTTAATGGCTACTG
*** * * * * **** *
11381831 G-AG--ATTTTTTAAAATTTTTCGAAAGGCATTTTTGCCCCAA-ACTTTGTAGACGTGATCCTTG
606 GCAGCAAACCTGTAAAA--TCTC-AAATGC-TCTTT-----AAGGGGGTGT-GA-GT--T-CTCG
** * * ****** * * * * * * *
11381892 TATTTTTGTTGGCATGGGCAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAG-ATTTTGTGACC
657 -AGGTTTGAT-G-A-GGG-ATAGGGGGCCA-ATATAAGGGCCAA--GTACCAGCA-------CCC
** * ** * * ***** ** ** * ** *
11381956 ATTTCAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGCAAACCTGT-AAAATCT
707 ATCGCACATCA-TGTGCGCA---C--AC-C-CCCCCGGC--C---CCCCCGATC-GTCGGAA-CC
* * * ** ** * ** * *
11382020 CAAATGCTCTTTAAAGGGGTGTGAGTTCT-CGA-G--G-TTTGATGAGGGATAG--GAGGCCAA-
757 CCAATGC-C-GT----CGGTCAG-GTTCTCCGACGATGCTCCGATGATGG-T-GCCCCGACGAAG
* * * * * * * * * * *
11382077 TATAA-G-GGC-CAAGTACCA-GCACCCATCATACATCATGTGC-GC-ACACCCCCCCTCGGGCC
813 AAAAATGCGGCACCAGCA-CATGC-CCGAGC--CCAGCATGTGCTGCTGCA---ACCCTCGGTCC
*** * **
11382136 CCCCCGATC---G-C--CG-A--AAC-CCCAATG
871 GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * ** *** *
11382160 C--CGTC-GGTAAGGTTCTCCGATGATGCTCTGGCAATGGTGC--CCCGACG-AA-GAAAAAT-A
1 CTTAGACTGGGAATGAACTCCG-T-ATGC-CT---AA--GT-CAACCC-ACGAAACG-AGCGTGC
* * * * ** * * *
11382217 TGGCAC-CAGCACATGCCTGAGCCCAGCATGTACTGCCGCAATCGTCGGTTCGATCCGATCTTAG
55 GGGCGCTCAGC-C-GGCCAGAG--GGGC-GGGA-TG-CGCAA--GCCGG---G----GATC---G
* * *** * * * * * * *
11382281 ATTGGGAAT-GAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGG-
101 GTCGGG--TCCCCCTCTGCATG-CT--GCCGATCC-TG---C-TGC-CGCA-AC-C-C--TCGGT
* * ** * * * * * * ** * ** *
11382344 CCAGAAGGGCGGGATGCACAAGTCGGGGATCGGTCGGATCCCCCTCCGCGTCTGCCGATCCTGCT
150 CC----GGTC-TGAT-C-TTAGACTGGGA---AT--GAACTCCGTATGCCTAAGCC-AACC-G--
* *** * * ** ** * * * * ** ** *
11382409 ACCGTAACCCTCGATC---CGATCTGATCTTAG-ACTAGGAAT-GAACTCCG-TATTC-CTAAGC
199 A-CGAAACGAGCGAGCGGACGAGC-GGGC-GGGCACTACG--TCG-GC-CAGAGAGACGGGATGC
* * * * ** * *** * * * ****
11382467 -CAA-CCGACGAAACGAGCAGGCG-GGCGGGCGGGCGGACAGGCACGACGCTGGCCAGAGAGATA
257 GCAAGCCG-TGGATCGA-TAGG-GTGGTAGG-TGG-GTTTAGGCAC-A-TCT--TCATATTTCT-
* * *
11382529 GAATGCGCAA-GCCGTGGATCGATAGGGTGGTAGGTGGGTT-TAGGCACATCTTCATATTTCTGC
312 GCATGC-CAATGCC----AT---T----T-TTA--TGGCTTGTA---A-A--TTCATA------C
* ** * * * * *
11382592 ATTCCAATGCCATTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTT
350 AAT--GGT-CC---CTTA-AGC------CTTC--AC----G----TGAAG--TT---T-------
* **
11382657 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTT
380 -CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTT
** *
11382722 TTAAAATTTTTTCAAAAGGAG-TTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTG
444 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
11382786 GCATGCACAAAATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
509 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
11382851 TGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTA
574 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
11382916 AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCA
639 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * *
11382980 CCCATCGCACATCATGTGTGCACA-CCCCCCAGCCCCCCTGATCGTCGGAACCTCAATGCCGTCG
704 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCG
* * * ** * *
11383044 GTCAGGTTCTCCGGCGATGCTTCCGGTGAGGGTGCCCCGGTGAAGAAAAATGTGGCACCAACACA
769 GTCAGGTTCTCCGACGATGC-TCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * *
11383109 TGCTCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACT
833 TGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* *
11383174 TCATATG
898 CCGTATG
* *
11383181 CTTAGACTGGGAATGAA-TACTGTATGCCTAAGTCAACCCATGAAAC-AGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACT-CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
11383244 CCGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCTCTCTGTGTGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATC
* * * ** * *
11383309 CTCCTACCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATTCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
11383374 A-C--CG--ACGA---A----ACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGAA
195 ACCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
11383427 AGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
11383492 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGTAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * **
11383557 CGACTTGTTTTTTATTTTTCACGATTTTTGAAACTTTTTTC-ATTCAGGA-TTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
* * * * *
11383620 TTGAAAGGAGTTTTAGCCCCAAACTTGGTAGTCATGATCCTTGTATTTTTGTTGGCATGCACAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
11383685 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCACCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
11383750 CAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTT-AGGGGGCGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
11383814 GTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
11383879 TCATGTGCGCACACCCCCCCTCGG--CCCCCTATCATCGGGACACCAATACCGCCGGTAAGGTTC
715 TCATGTGCGCACA-CCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * **
11383942 TCCGGCGATGCTCC-AGTGATGGTGCCTCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGC
778 TCCGACGATGCTCCGA-TGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
11384006 CCAGCTTGTACTGCTGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
842 CCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
11384069 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
11384134 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGT-CCCCTCTGCGTGGTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
* * * * * * * ** *
11384198 TGCTACGGTAATCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTATATTCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
11384263 -C--CG--ACGA---A----ACGTGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
11384316 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
11384381 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGTAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** *
11384446 GACTTGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTAAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
* * * * * * *
11384511 TGAAAGGAGTGTTAGCCCCAAACTTGGTAGTCGTGATCCTTGTACTTTTGTTGGCATGCGCAAAA
456 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
11384576 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTC
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
11384641 AGACACTTTAATGGCGACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAA-GGGGTGTGAG
586 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
11384705 TTCTCGAGGTTTGGTGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT
651 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** * **
11384770 CATGTGCGTATACCCCCCCTCCCGGCCCCGACGATCGTTGGAACCCCAATGTTGTCGGTCAGGTT
716 CATGTGCG--CA-CACCCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * ** * * * *
11384835 CTCCGGCGATGCTTCGACGATGGTGGCAGGGCGAGGAAAAATGCTGCACCAGCCCATGCCCGAGC
777 CTCCGACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
** * * * **
11384900 ATAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATG
842 CCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
11384963 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGGGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
11385028 TGGCCAGA-GAGCGGGATGCACAAGACGGGGATCGGCCGGGTCCCCTTCTGCGTGCTACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
* * *
11385092 TGCTGCCGCAACCCAT-GGTTCGCT-TCGGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
131 TGCTGCCGCAACCC-TCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * **
11385155 AACCGACGAAAC--G-G-GCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATAAGC
194 AACCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
11385216 AAGCCGTGGATCTATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCATTGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
11385281 CTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
11385346 ATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
* *
11385411 TTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
11385476 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
11385540 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
11385605 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * **
11385670 ATCATGTGCGCACA-CCCCCCGGCCCCCCTGATC-ACAGGAACCAAAATGCCGTCGGTCAGGTTC
714 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTC
* * * * * *
11385733 TCCTG-CGATGCTCCGACGATGGTTCACCGACGAAGAAAAATGTGGCACCAAG-ACATACCTGAG
778 TCC-GACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACC-AGCACATGCCCGAG
* * * *
11385796 CCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCCTATG
841 CCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * **
11385860 GTTAGACTGGAAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
11385925 CGGCCAGAGGGGCGGGATGTGCAAGCTGGGGATCGGCCAGGTCCCTCTCTACATGCTGCCGATCA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
* * *
11385990 TGCTACCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** * * *
11386055 CCGACAAAACGAGCGGGCGGGCGAGCAGGCGGGCACTACACCGACCAGAGAGATGGGATGTGCAA
196 CCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * ** *
11386120 GTCGTGGATTGATTGGGTGGTAGGTGGGTTTATTCACATCTCCATATTTCTGCATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
11386185 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * ** * * *
11386250 CACTTGGTTTCTATTTTTCATAATTTTTGAAAC-TTTTATGGTTTGAGATTTTTTAAAATTTTTG
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
* * * * *
11386314 CAGAA-AACGTTTTGGCACCAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCACAAC
456 CGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA-
*
11386378 AAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
11386443 TCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
11386508 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGTAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
11386573 ATCATGTGCGCACACCCCCCCGGCCACCCCGATCGTCGGAAACCCAATGCCGTCGATCAGGTTCT
714 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * *
11386638 CCGACGATGCTCC-AGTGATTGTGCCCCGACGAAGATAAATGTGACACCAACACATGCCCGAGCC
779 CCGACGATGCTCCGA-TGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
** * * *
11386702 CAGCATGTGCAACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
843 CAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
11386764 CTTAGACTGGGAATCAA---C---T-CC---GT--------------A-----CGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
11386800 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTTGCCGAGTCCCCCTCTGCATGTTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
* * * *
11386865 TGCTGCCGTAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGAACTCCGTAT
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG----CC-TAA
* * * * * * * *
11386930 GCCTAA--G-CCAACCGA-CGAAACGAACGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGAA
191 GCC-AACCGACGAAACGAGCG-AGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
11386991 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
254 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* * *
11387056 AATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTCCATG
319 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * ** *
11387121 GCAAGACGACTCGTGTTCTATTTTTCATGATTTTTAAAACCTTTTGTGGTTTAGGATTTTTTAAA
384 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAA
* *
11387186 ATTTTTTCGGAAGGATTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
449 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
11387251 CACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCC
514 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
11387316 TCATGTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-A----
579 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
11387376 -----AGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
644 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
11387436 CTCACATCAAGTGCGCACA-CCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAG
709 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* * * * * * * *
11387500 GTTCTCTGATGATGCTCCGACGATAGTGTCCTGATGAAGAAAAATGTGGCACCAGCACATGCCCG
774 GTTCTCCGACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * ** *
11387565 AGCCTAGCTTGTGCTACTGCAACCCTCTGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
839 AGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
11387630 G
904 G
* * * * *
11387631 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACGAAACGAACGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
11387696 CGGCCAGAGGGGCGGCATGCGCAAGCCAGGGATCGG-CTAGGTCCCCCTCTACATGTTGCTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCATGCTGCCGATC
* * ** *
11387760 CTGCTGCCGCAACCCTCAGTCCTGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * ***
11387825 ATCGACGAAACGAGC-AGGCGGGC-AGGCGGGAGGGCACCAAACCGGCCAGAGAGACGGGATGCG
195 ACCGACGAAACGAGCGA-GCGGACGA-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* * *
11387888 CAAGCCGTGGATCGATAGGATGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
11387953 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTAACATGAAGTTTCACGGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * ***
11388018 GATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAAATT
388 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTT-AAAATT
* *
11388083 TTTTCGGAAGGAGTTTTGGCGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT
452 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
11388148 AAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
11388213 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGCTCTTTAAGGGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
11388278 TGAGTTCTCAAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
11388343 ACATCATGTGCGCACA-CCCCCTGGCCCCCCGGATCGTCGGAACCCCAATGTCGCCGGTCAGGTT
712 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
** *
11388407 CTCCGACGATGCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCA
777 CTCCGACGATGCT-C--CGA---T-----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* *
11388472 CATGCCCGAGCCCAGCATGTTCTG-TGGCAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGA
831 CATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
*
11388536 ACTCCATATG
895 ACTCCGTATG
* * ** * * * *
11388546 CTTATACTGGGAATGAACTCAGTATGCCTAAGTCAACTAACAAAACGAGCGGGCGGGTGTTCA-C
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * ** * * * *
11388610 CTGGCCAGAGGGGCGGGACGCATAAGCCGGGGACCGATTGGGTCCCATTCTACGTCCTGCTGATC
66 C-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATC
* * * * * *
11388675 TTGCTACCGTAACCCTTGGTCCAGT-TCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
130 CTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** * * *
11388739 AATCGACG--AC-A-CGAGC-G--G-GCGGGCGGGCACCACACCGACCAGAGAGATGGGATGTGC
194 AACCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
11388796 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
11388843 TTGAAGTGTA
Statistics
Matches: 9899, Mismatches: 1656, Indels: 1064
0.78 0.13 0.08
Matches are distributed among these distances:
867 168 0.02
868 83 0.01
869 10 0.00
870 8 0.00
871 24 0.00
872 15 0.00
873 3 0.00
874 18 0.00
875 175 0.02
876 18 0.00
877 19 0.00
878 322 0.03
879 100 0.01
880 25 0.00
881 7 0.00
882 12 0.00
883 5 0.00
884 4 0.00
886 1 0.00
887 89 0.01
888 803 0.08
889 221 0.02
890 706 0.07
891 343 0.03
892 23 0.00
893 254 0.03
894 457 0.05
895 14 0.00
896 114 0.01
897 291 0.03
898 413 0.04
899 305 0.03
900 302 0.03
901 171 0.02
902 854 0.09
903 688 0.07
904 674 0.07
905 969 0.10
906 4 0.00
907 83 0.01
910 4 0.00
911 4 0.00
912 5 0.00
913 2 0.00
914 3 0.00
915 256 0.03
917 1 0.00
918 6 0.00
919 11 0.00
920 10 0.00
921 3 0.00
922 6 0.00
923 9 0.00
924 3 0.00
925 10 0.00
926 14 0.00
927 17 0.00
928 11 0.00
929 22 0.00
930 3 0.00
931 23 0.00
932 17 0.00
933 6 0.00
934 2 0.00
936 6 0.00
937 2 0.00
938 2 0.00
939 1 0.00
940 4 0.00
943 6 0.00
944 8 0.00
945 3 0.00
946 2 0.00
947 4 0.00
948 2 0.00
949 3 0.00
950 7 0.00
951 5 0.00
952 2 0.00
953 4 0.00
954 2 0.00
955 10 0.00
956 7 0.00
957 12 0.00
958 16 0.00
959 7 0.00
960 1 0.00
961 3 0.00
962 3 0.00
963 3 0.00
964 7 0.00
965 2 0.00
967 1 0.00
969 9 0.00
970 3 0.00
971 1 0.00
972 1 0.00
973 11 0.00
974 4 0.00
975 1 0.00
978 9 0.00
979 2 0.00
980 2 0.00
981 5 0.00
982 3 0.00
983 4 0.00
984 10 0.00
985 11 0.00
986 8 0.00
987 5 0.00
988 5 0.00
989 3 0.00
990 3 0.00
991 1 0.00
994 2 0.00
995 5 0.00
997 4 0.00
998 8 0.00
999 5 0.00
1002 6 0.00
1005 7 0.00
1006 7 0.00
1007 1 0.00
1008 1 0.00
1009 6 0.00
1010 3 0.00
1011 33 0.00
1012 22 0.00
1013 11 0.00
1014 13 0.00
1015 8 0.00
1016 14 0.00
1017 11 0.00
1018 9 0.00
1019 1 0.00
1020 3 0.00
1021 9 0.00
1022 4 0.00
1023 5 0.00
1024 101 0.01
1025 45 0.00
1026 46 0.00
1027 33 0.00
1028 24 0.00
1029 16 0.00
1030 40 0.00
1031 96 0.01
1032 90 0.01
1033 35 0.00
1034 34 0.00
1035 65 0.01
1036 53 0.01
1037 34 0.00
1038 72 0.01
1039 48 0.00
1040 28 0.00
1041 34 0.00
1042 34 0.00
1043 23 0.00
1044 28 0.00
1045 12 0.00
1046 5 0.00
1047 14 0.00
1048 13 0.00
1049 28 0.00
1050 14 0.00
1051 10 0.00
1052 15 0.00
1053 20 0.00
1054 15 0.00
1055 234 0.02
1056 143 0.01
1057 40 0.00
1058 13 0.00
1059 226 0.02
1060 207 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (904 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
GACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:11379464 original size:26 final size:26
Alignment explanation
Indices: 11379425--11379477 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11379415 CTAGTCTGAT
11379425 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
11379451 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
11379477 C
1 C
11379478 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:11381540 original size:158 final size:160
Alignment explanation
Indices: 11381237--11381605 Score: 449
Period size: 158 Copynumber: 2.3 Consensus size: 160
11381227 ACTCCATATG
* * *
11381237 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCGCTCAGA
* * * *
11381302 CGACCGGAGGTGCGGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCTAATT
66 CGACCAGAGGAGCGGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGAGCTGCTAATC
* * * **
11381367 CTGCTGCTATAACCCTTAGTTC-GGTCTGAT
131 CTGATGCTACAACCCTT-GATCTGGTCCAAT
* * *
11381397 CTTAGACTGGGAATGCACTCTGTATGCCTAAGTCAACCCATGAAACAAGCATGC-AGCGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCGCTCAGA
* * * ** * *
11381460 CCAGCCAGAGGAGC-GGGATGCGCAAGTCGGGGATTGGTCGGGTCCCCCTCTGTGAGCTGTTGAT
66 CGA-CCAGAGGAGCGGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGAGCTGCTAAT
* *
11381524 CCTGATGTTGCAACCCTTGATCTGGTCCAAT
130 CCTGATGCTACAACCCTTGATCTGGTCCAAT
* * *
11381555 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCA
11381606 AGCGGGCGGG
Statistics
Matches: 177, Mismatches: 30, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 3 0.02
158 109 0.62
159 15 0.08
160 50 0.28
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.22
Consensus pattern (160 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCGCTCAGA
CGACCAGAGGAGCGGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGAGCTGCTAATC
CTGATGCTACAACCCTTGATCTGGTCCAAT
Found at i:11383618 original size:24 final size:25
Alignment explanation
Indices: 11383574--11383620 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11383564 TTTTTTATTT
*
11383574 TTCACGATTTTTGAAACTTTTTTCA
1 TTCACGATTTTTGAAAATTTTTTCA
*
11383599 TTCAGGATTTTT-AAAATTTTTT
1 TTCACGATTTTTGAAAATTTTTT
11383621 TGAAAGGAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.55
Consensus pattern (25 bp):
TTCACGATTTTTGAAAATTTTTTCA
Found at i:11383797 original size:888 final size:892
Alignment explanation
Indices: 11381397--11388842 Score: 9120
Period size: 888 Copynumber: 8.3 Consensus size: 892
11381387 TCGGTCTGAT
* * * * *
11381397 CTTAGACTGGGAATGCACTCTGTATGCCTAAGTCAACCCATGAAACAAGCATGC-AGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
11381461 CAGCCAGAGGAGCGGGATGCGCAAGTCGGGGATTGGTCGGGTCCCCCTCTGTGAGCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
* *** * * * * * *
11381526 TGATGTTGCAACCCTTGATCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
11381591 CCAATGAAACGAGCAAGCGGGCGGGTGGGCGGGCACTTCGCCAGCCAGAGAGACAGGATGCACGA
196 CC---G--ACGA--AA-CGAGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
11381656 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCTTATTTCTGCATGCCAATGCCA
249 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
11381721 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
314 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * **** **
11381786 GGCTCATTTTTTATTTTTTTTTATTTTCAAAACTTTTTACGGTTC-GAGATTTTTTAAAA-TTTT
379 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTT
* * **
11381849 TCGAAAGGCA-TTTTTGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGGGCAA
443 TCGAAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
11381913 AAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATT
507 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
11381978 CCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
572 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
* **
11382043 AGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCATAC
637 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
11382108 ATCATGTGCGCACACCCCCCCTCGGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTAAGGT
702 ATCATGTGCGCACA-CCCCCC-C-GGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* * * * *
11382173 TCTCCGATGATGCTCTGGCAATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCTGAG
764 TCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
*
11382238 CCCAGCATGTACTGCCGCAA---TC-GT-C-G---G---TT---C-------G-A-TCCG-AT-
829 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
11382276 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
11382341 CGGCCAGAAGGGCGGGATGCACAAGTCGGGGATCGGTCGGATCCCCCTCCGCGT-CTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * *
11382405 TGCTACCGTAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATTCCTAAGCCAA
131 TGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** *
11382470 CCGACGAAACGAGCAGGCGGGCGGGCGGGCGGACAGGCACGACGCTGGCCAGAGAGATAGAATGC
196 CCGACGAAAC--G-A-----GCGGGCGGGC--AC---TACG-C-C-GGCCAGAGAGACGGGATGC
*
11382535 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAAT
245 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
11382600 GCCATTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
310 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** **
11382665 AGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATT
375 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATT
* *
11382730 TTTTCAAAAGGAG-TTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
440 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
11382794 AAAATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCA
505 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
11382859 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAAGGGGTG
570 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
11382924 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGC
635 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
11382988 ACATCATGTGTGCACA-CCCCCCAGCCCCCCTGATCGTCGGAACCTCAATGCCGTCGGTCAGGTT
700 ACATCATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * ** * *
11383052 CTCCGGCGATGCTTCCGGTGAGGGTGCCCCGGTGAAGAAAAATGTGGCACCAACACATGCTCGAG
765 CTCCGACGATGC-TCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
* * *
11383117 CCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCATATG
829 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
11383181 CTTAGACTGGGAATGAA-TACTGTATGCCTAAGTCAACCCATGAAAC-AGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
11383244 CCGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCTCTCTGTGTGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * *
11383309 CTCCTACCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATTCCTAAGCCA
130 CTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
11383374 ACCGACGAAACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGAAAGCCGTGGATCG
195 ACCGACGAAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
11383439 ATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCT
260 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * * *
11383504 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGTAAGACGACTTGTTTTT
325 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
11383569 TATTTTTCACGATTTTTGAAACTTTTTTC-ATTCAGGA-TTTTTAAAATTTTTTTGAAAGGAGTT
390 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTT
* * *
11383632 TTAGCCCCAAACTTGGTAGTCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
455 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
11383697 AAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCACCATTTCAGACACTTTAA
520 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
11383762 TGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTT-AGGGGGCGTGAGTTCTCGAGGTT
585 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTT
*
11383826 TGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
650 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * * *
11383891 ACCCCCCCTCGG-CCCCCT-ATCATCGGGACACCAATACCGCCGGTAAGGTTCTCCGGCGATGCT
715 A-CCCCCC-CGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * * * * *
11383954 CCAGTGATGGTGCCTCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCTTGTACTG
778 CCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
11384019 CTGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
843 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
11384069 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
11384134 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGT-CCCCTCTGCGTGGTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * ** *
11384198 TGCTACGGTAATCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTATATTCCTAAGCCAA
131 TGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
11384263 CCGACGAAACGTGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
196 CCGACGAAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
11384328 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTT
261 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * * *
11384393 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGTAAGACGACTTGTTTTTT
326 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
11384458 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTAAAAATTTTTTTGAAAGGAGTGT
391 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
* * * *
11384523 TAGCCCCAAACTTGGTAGTCGTGATCCTTGTACTTTTGTTGGCATGCGCAAAAAAATTCAGCTAA
456 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
11384588 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAAT
521 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
11384653 GGCGACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTT-AAGGGGTGTGAGTTCTCGAGGTTT
586 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTT
* * * *
11384717 GGTGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGTATA
651 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA
* * * ** *
11384782 CCCCCCCTCCCGGCCCCGAC-GATCGTTGGAACCCCAATGTTGTCGGTCAGGTTCTCCGGCGATG
714 -CACCCC-CCCGGCCCC-CCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* * * ** * * * **
11384846 CTTCGACGATGGTGGCAGGGCGAGGAAAAATGCT-GCACCAGCCCATGCCCGAGCATAGCATGTG
776 CTCCGGCGATGGTGCCCCGACGAAGAAAAATG-TGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * **
11384910 CTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATG
840 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
11384963 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGGGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
11385028 TGGCCAGA-GAGCGGGATGCACAAGACGGGGATCGGCCGGGTCCCCTTCTGCGTGCTACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * * *
11385092 TGCTGCCGCAACCCAT-GGTTCGCTTCGGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTACCGTAACCC-TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * **
11385156 ACCGACGAAACGGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATAAGCAAGCC
195 ACCGACGAAA----CGAGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
11385221 GTGGATCTATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCATTGCCTTTT
252 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
11385286 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
317 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** *
11385351 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGG
382 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGA
* *
11385416 ATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAA
447 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
11385481 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGA
512 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
11385545 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTC
577 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
*
11385610 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCAT
642 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* **
11385675 GTGCGCACA-CCCCCCGGCCCCCCTGATC-ACAGGAACCAAAATGCCGTCGGTCAGGTTCTCCTG
707 GTGCGCACACCCCCCCGGCCCCCCTGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCC-G
* * * * *
11385738 -CGATGCTCCGACGATGGTTCACCGACGAAGAAAAATGTGGCACCAAG-ACATACCTGAGCCCAG
770 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACC-AGCACATGCCCGAGCCCAG
* * *
11385801 CATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCCTATG
834 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * **
11385860 GTTAGACTGGAAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
11385925 CGGCCAGAGGGGCGGGATGTGCAAGCTGGGGATCGGCCAGGTCCCTCTCTACATGCTGCCGATCA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
** * *
11385990 TGCTACCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
11386055 CCGACAAAACGAGCGGGCGGGCGAGCAGGCGGGCACTACACCGACCAGAGAGATGGGATGTGCAA
196 CCGACGAAACGA--------GC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * ** *
11386120 GTCGTGGATTGATTGGGTGGTAGGTGGGTTTATTCACATCTCCATATTTCTGCATGCCAATGCCA
249 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
11386185 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
314 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * ** * *
11386250 CACTTGGTTTCTATTTTTCATAATTTTTGAAAC-TTTTATGGTT-TGAGATTTTTTAAAATTTTT
379 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTT
* * * *
11386313 GCAGAAA--ACGTTTTGGCACCAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCACA
443 TC-GAAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
11386376 ACAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
506 A-AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
11386441 TTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
570 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
* *
11386506 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGT
635 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
11386571 ACATCATGTGCGCACACCCCCCCGGCCACCCC-GATCGTCGGAAACCCAATGCCGTCGATCAGGT
700 ACATCATGTGCGCACACCCCCCCGGCC-CCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* * * * * *
11386635 TCTCCGACGATGCTCCAGTGATTGTGCCCCGACGAAGATAAATGTGACACCAACACATGCCCGAG
764 TCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
** * *
11386700 CCCAGCATGTGCAACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
829 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
11386764 CTTAGACTGGGAATCAA--C----T-CC---GT--------------A-----CGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * **
11386800 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTTGCCGAGTCCCCCTCTGCATGTTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * *
11386865 TGCTGCCGTAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGAACTCCGTAT
131 TGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACT-GG---G-A------ATGAACTCCGTAT
* *
11386930 GCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGAATGCG
185 GCCTAAGCCAACCGACGAAACG-A---GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
11386995 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
246 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
11387060 TCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTCCATGGCAA
311 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * ** *
11387125 GACGACTCGTGTTCTATTTTTCATGATTTTTAAAACCTTTTGTGGTTTAGGATTTTTTAAAATTT
376 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTT
* * *
11387190 TTTCGGAAGGATTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
441 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
11387255 AAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCAT
506 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
11387320 GTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT--A-------
571 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGT
* *
11387376 -AGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCA
636 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*
11387440 CATCAAGTGCGCACA-CCCCCCGG-CCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
701 CATCATGTGCGCACACCCCCCCGGCCCCCCT-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * * * *
11387503 CTCTGATGATGCTCCGACGATAGTGTCCTGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
765 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* * * * * ** *
11387568 CTAGCTTGTGCTACTGCAACCCTCTGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
830 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
11387631 CTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCTACGAAACGAACGTGCGGGTGCTCAA
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
11387695 CCGGCCAGAGGGGCGGCATGCGCAAGCCAGGGATCGG-CTAGGTCCCCCTCTACATGTTGCTGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCTGAT
* * * * * *
11387759 CCTGCTGCCGCAACCCTCAGTCCTGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * **
11387824 AATCGACGAAACGAGCAGGCGGGCAGGCGGGAGGGCACCAAACCGGCCAGAGAGACGGGATGCGC
194 AACCGACGAAAC--G-A-GC--G--GGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
11387889 AAGCCGTGGATCGATAGGATGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
247 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
11387954 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTAACATGAAGTTTCACGGCAAG
312 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
11388019 ATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAAATTT
377 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT-AAAATTT
* * *
11388084 TTTCGGAAGGAGTTTTGGCGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATA
441 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
11388149 AAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
506 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
11388214 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGCTCTTTAAGGGGGTGT
571 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGT
* * *
11388279 GAGTTCTCAAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
636 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
11388344 CATCATGTGCGCACA-CCCCCTGGCCCCCCGGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTC
701 CATCATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
** **
11388408 TCCGACGATGCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCAC
766 TCCGACGATGCT-C--C---G----G-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
* ** *
11388473 ATGCCCGAGCCCAGCATGTTCTGTGGCAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAAC
820 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
*
11388538 TCCATATG
885 TCCGTATG
* * ** * * * *
11388546 CTTATACTGGGAATGAACTCAGTATGCCTAAGTCAACTAACAAAACGAGCGGGCGGGTGTTCA-C
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * ** * *
11388610 CTGGCCAGAGGGGCGGGACGCATAAGCCGGGGACCGATTGGGTCCCATTCTACGTCCTGCTGATC
66 C-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * * *
11388675 TTGCTACCGTAACCCTTGGTCCAGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
130 CTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
11388740 ATCGACGACACGAGCGGGCGGGCGGGCACCACACCGACCAGAGAGATGGGATGTGCAAGCCGTGG
195 ACCGACGA-A--A-CGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
11388805 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
256 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
11388843 TTGAAGTGTA
Statistics
Matches: 5745, Mismatches: 631, Indels: 354
0.85 0.09 0.05
Matches are distributed among these distances:
865 4 0.00
866 1 0.00
867 163 0.03
868 74 0.01
871 1 0.00
872 2 0.00
873 2 0.00
874 6 0.00
875 102 0.02
876 3 0.00
877 4 0.00
878 339 0.06
879 256 0.04
880 65 0.01
881 1 0.00
882 40 0.01
883 408 0.07
884 13 0.00
885 37 0.01
886 34 0.01
887 75 0.01
888 640 0.11
889 281 0.05
890 279 0.05
891 6 0.00
892 12 0.00
893 232 0.04
894 459 0.08
895 6 0.00
896 97 0.02
897 212 0.04
898 118 0.02
899 1 0.00
900 4 0.00
901 147 0.03
902 636 0.11
903 159 0.03
904 347 0.06
905 132 0.02
907 75 0.01
910 1 0.00
911 3 0.00
913 1 0.00
914 2 0.00
915 261 0.05
916 1 0.00
917 1 0.00
918 1 0.00
919 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
TGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
GCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:11384072 original size:26 final size:26
Alignment explanation
Indices: 11384043--11384095 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11384033 CCGATCCGAT
11384043 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11384069 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11384095 C
1 C
11384096 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11384987 original size:26 final size:26
Alignment explanation
Indices: 11384937--11384989 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11384927 CCGGTCTGAT
**
11384937 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11384963 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11384989 C
1 C
11384990 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11385161 original size:894 final size:889
Alignment explanation
Indices: 11381397--11388842 Score: 8764
Period size: 902 Copynumber: 8.3 Consensus size: 889
11381387 TCGGTCTGAT
* * * * * *
11381397 CTTAGACTGGGAATGCACTCTGTATGCCTAAGTCAACCCATGAAACAAGCATGC-AGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * **
11381461 CAGCCAGAGGAGCGGGATGCGCAAGTCGGGGATTGGTCGGGTCCCCCTCTGTGAGCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
* *** * * * * * *
11381526 TGATGTTGCAACCCTTGATCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGTAACCC-TGGT-TCGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
11381591 CCAATGAAACGAGCAAGCGGGCGGGTGGGCGGGCACTTCGCCAGCCAGAGAGACAGGATGCACGA
194 CC---G--ACGA--AA-CGGGC----GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
11381656 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCTTATTTCTGCATGCCAATGCCA
247 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
11381721 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
312 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * **** **
11381786 GGCTCATTTTTTATTTTTTTTTATTTTCAAAACTTTTTACGGTTC-GAGATTTTTTAAAA-TTTT
377 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTT
* * **
11381849 TCGAAAGGCA-TTTTTGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGGGCAA
441 TCGAAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
11381913 AAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATT
505 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATT
* *
11381978 CCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
570 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTG
* **
11382043 AGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCATAC
634 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
11382108 ATCATGTGCGCACACCCCCCCTCGGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTAAGGT
699 ATCATGTGCGCAC-CCCCCCC-CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
** * * * * *
11382173 TCTCCGATGATGC-TCTGGCAATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCTGA
761 TCTCCGGCGATGCTTC-GACGATGGTGCCACGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
*
11382237 GCCCAGCATGTACTGCCGCAA---TC-GT-C-G---G---TT---C-------G-A-TCCG-AT-
825 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
11382276 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
11382341 CGGCCAGAAGGGCGGGATGCACAAGTCGGGGATCGGTCGGATCCCCCTCCGCGT-CTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * * * *
11382405 TGCTACCGTAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATTCCTAAGCCAA
131 TGCTACCGTAACCCT-GGTTCGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** *
11382470 CCGACGAAACGAGCAGGCGGGCGGGCGGGCGGACAGGCACGACGCTGGCCAGAGAGATAGAATGC
194 CCGACG--A--A--A--CGGGCGGGCGGGC--AC---TACG--TC-GGCCAGAGAGACGGGATGC
*
11382535 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAAT
243 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
11382600 GCCATTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
308 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** **
11382665 AGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATT
373 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATT
* *
11382730 TTTTCAAAAGGAG-TTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
438 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
11382794 AAAATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCA
503 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCA
* *
11382859 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAAGGGGTG
568 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTG
11382924 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGC
632 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
11382988 ACATCATGTGTGCA--CACCCCCCAGCCCCCCTGATCGTCGGAACCTCAATGCCGTCGGTCAGGT
697 ACATCATGTGCGCACCCCCCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGT
** * * ** * *
11383051 TCTCCGGCGATGCTTCCGGTGAGGGTGCCCCGGTGAAGAAAAATGTGGCACCAACACATGCTCGA
761 TCTCCGGCGATGCTT-CGACGATGGTGCCACGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
* * *
11383116 GCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCATATG
825 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
11383181 CTTAGACTGGGAATGAA-TACTGTATGCCTAAGTCAACCCATGAAAC-AGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACT-CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
11383244 CCGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGT-CCCTCTCTGTGTGCTGCCGAT
65 CCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCT-TCTGCGTGCTGCCGAT
* * * * * *
11383308 CCTCCTACCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATTCCTAAGCC
129 CCTGCTACCGTAACCCT-GGTTC-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
11383373 AACCGACGAAACGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGAAAGCCGTGGATC
192 AACCGACGAAACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
11383438 GATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGC
257 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * *
11383503 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGTAAGACGACTTGTTTT
322 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
11383568 TTATTTTTCACGATTTTTGAAACTTTTTTC-ATTCAGGA-TTTTTAAAATTTTTTTGAAAGGAGT
387 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGT
* * *
11383631 TTTAGCCCCAAACTTGGTAGTCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
452 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
11383696 AAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCACCATTTCAGACACTTTA
517 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTA
* * *
11383761 ATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAGGGGGCGTGAGTTCTCGAGGTT
582 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTT
*
11383826 TGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
647 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * * * *
11383891 ACCCCCCCTCGG-CCCCCTATCATCGGGACACCAATACCGCCGGTAAGGTTCTCCGGCGATGC-T
712 -CCCCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTT
* * * * * *
11383954 CCAGTGATGGTGCCTCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCTTGTACTG
776 CGA-CGATGGTGCCACGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
11384019 CTGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
840 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
11384069 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
11384134 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCC-TCTGCGTGGTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * * * ** *
11384198 TGCTACGGTAATCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTATATTCCTAAGCCAA
131 TGCTACCGTAA-CCCTGGT-TCGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
11384263 CCGACGAAACGTGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
194 CCGACGAAACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
11384328 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTT
259 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * * *
11384393 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGTAAGACGACTTGTTTTTT
324 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
11384458 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTAAAAATTTTTTTGAAAGGAGTGT
389 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
* * * *
11384523 TAGCCCCAAACTTGGTAGTCGTGATCCTTGTACTTTTGTTGGCATGCGCAAAAAAATTCAGCTAA
454 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
11384588 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAAT
519 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAAT
* *
11384653 GGCGACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGTGTGAGTTCTCGAGGTTTG
584 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTG
* * * *
11384718 GTGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGTATAC
649 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CAC
* * **
11384783 CCCCCCTCCCGGCCCCGACGATCGTTGGAACCCCAATGTTGTCGGTCAGGTTCTCCGGCGATGCT
712 CCCCCC-CCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT
* * * * * **
11384848 TCGACGATGGTGGCAGGGCGAGGAAAAATGCT-GCACCAGCCCATGCCCGAGCATAGCATGTGCT
775 TCGACGATGGTGCCACGACGAAGAAAAATG-TGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * **
11384912 ACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATG
839 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
11384963 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGGGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
11385028 TGGCCAGA-GAGCGGGATGCACAAGACGGGGATCGGCCGGGTCCCCTTCTGCGTGCTACTGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * *
11385092 TGCTGCCGCAACCCATGGTTCGCTTCGGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGTAACCC-TGGTTCG-TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
**
11385157 CCGACGAAACGGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATAAGCAAGCCG
194 CCGACGAAA----CGGGC--G--GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
11385222 TGGATCTATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCATTGCCTTTTT
251 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
11385287 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
316 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** *
11385352 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGA
381 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAA
* *
11385417 TGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAAT
446 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
11385482 TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGAC
511 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGAC
11385546 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCT
576 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCT
*
11385611 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
640 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * ** *
11385676 TGCGCA--CACCCCCCGGCCCCCCTGATC-ACAGGAACCAAAATGCCGTCGGTCAGGTTCTCCTG
705 TGCGCACCCCCCCCCCGGCCCCCC-GATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * *
11385738 CGATGCTCCGACGATGGT-TCACCGACGAAGAAAAATGTGGCACCAAG-ACATACCTGAGCCCAG
768 CGATGCTTCGACGATGGTGCCA-CGACGAAGAAAAATGTGGCACC-AGCACATGCCCGAGCCCAG
* * *
11385801 CATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCCTATG
831 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * **
11385860 GTTAGACTGGAAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
11385925 CGGCCAGAGGGGCGGGATGTGCAAGCTGGGGATCGGCCAGGT-CCCTCTCTACATGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCT-TCTGCGTGCTGCCGATC
* ** * *
11385989 ATGCTACCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGTAACCC-TGGTTCGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * *
11386054 ACCGACAAAACGAGCGGGCGGGCGAGCAGGCGGGCACTACACCGACCAGAGAGATGGGATGTGCA
193 ACCGAC-GAA--A-----CGGGC--G--GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * ** *
11386119 AGTCGTGGATTGATTGGGTGGTAGGTGGGTTTATTCACATCTCCATATTTCTGCATGCCAATGCC
246 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
11386184 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
311 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** * *
11386249 CCACTTGGTTTCTATTTTTCATAATTTTTGAAAC-TTTTATGGTT-TGAGATTTTTTAAAATTTT
376 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTT
* * * *
11386312 TGCAGAAA--ACGTTTTGGCACCAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCAC
440 TTC-GAAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
11386375 AACAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
503 AA-AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACC
* *
11386440 ATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
567 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGT
*
11386505 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCG
631 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
11386570 TACATCATGTGCGCA-CACCCCCCCGGCCACCCCGATCGTCGGAAACCCAATGCCGTCGATCAGG
696 CACATCATGTGCGCACCCCCCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * * * * * *
11386634 TTCTCCGACGATGC-TCCAGTGATTGTGCCCCGACGAAGATAAATGTGACACCAACACATGCCCG
760 TTCTCCGGCGATGCTTCGA-CGATGGTGCCACGACGAAGAAAAATGTGGCACCAGCACATGCCCG
** * *
11386698 AGCCCAGCATGTGCAACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
824 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
11386763 G
889 G
* *
11386764 CTTAGACTGGGAATCAA---C---T-CC---GT--------------A-----CGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
11386800 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTTGCCGAGTCCCCCTCTGCATGTTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * *
11386865 TGCTGCCGTAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGAACTCCGTAT
131 TGCTACCGTAACCCT-GGTTCGTTC-GATCTTAGACT-GG---G-A------ATGAACTCCGTAT
* * *
11386930 GCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGAATGCG
183 GCCTAAGCCAACCGACG--A--AACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
11386995 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
244 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
11387060 TCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTCCATGGCAA
309 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * ** *
11387125 GACGACTCGTGTTCTATTTTTCATGATTTTTAAAACCTTTTGTGGTTTAGGATTTTTTAAAATTT
374 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTT
* * *
11387190 TTTCGGAAGGATTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
439 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
11387255 AAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTC-CTCA
504 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCAC-CA
* *
11387319 TGTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-A-------
568 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGT
* *
11387376 -AGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCA
633 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
11387440 CATCAAGTGCGCA--CACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
698 CATCATGTGCGCACCCCCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* ** * * * *
11387503 CTCTGATGATGCTCCGACGATAGTGTCC-TGATGAAGAAAAATGTGGCACCAGCACATGCCCGAG
762 CTCCGGCGATGCTTCGACGATGGTG-CCACGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
* * * * * ** *
11387567 CCTAGCTTGTGCTACTGCAACCCTCTGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
826 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
11387631 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACGAAACGAACGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * * * *
11387696 CGGCCAGAGGGGCGGCATGCGCAAGCCAGGGATCGGCTAGGTCCCCCTCTACATGTTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * * * * * *
11387761 TGCTGCCGCAACCCTCAGTCCTGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGTAACCCT-GGTTC-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ***
11387826 TCGACGAAACGAGCAGGCGGGCAGGCGGGAGGGCACCAAACCGGCCAGAGAGACGGGATGCGCAA
194 CCGACGAAAC--G--GGC--G--GGC----GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * *
11387891 GCCGTGGATCGATAGGATGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
247 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
11387956 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTAACATGAAGTTTCACGGCAAGAT
312 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
11388021 GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAAATTTTT
377 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT-AAAATTTTT
* * *
11388086 TCGGAAGGAGTTTTGGCGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAA
441 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
11388151 AAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
506 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTT
*
11388216 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGCTCTTTAAGGGGGTGTGA
571 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
* * *
11388281 GTTCTCAAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
635 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
11388346 TCATGTGCGCA--CACCCCCTGGCCCCCCGGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCT
700 TCATGTGCGCACCCCCCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * ** **
11388409 CCGACGATGCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACA
764 -C--C---G----G-CGATGCTTCGACGATGGTGCCACGACGAAGAAAAATGTGGCACCAGCACA
* ** *
11388474 TGCCCGAGCCCAGCATGTTCTGTGGCAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACT
818 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
*
11388539 CCATATG
883 CCGTATG
* * ** * * * *
11388546 CTTATACTGGGAATGAACTCAGTATGCCTAAGTCAACTAACAAAACGAGCGGGCGGGTGTTCA-C
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *** * * * *
11388610 CTGGCCAGAGGGGCGGGACGCATAAGCCGGGGACCGATTGGGTCCCATTCTACGTCCTGCTGATC
66 C-GGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATC
* * *
11388675 TTGCTACCGTAACCCTTGGTCCAGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
130 CTGCTACCGTAACCC-TGGTTC-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * * *
11388740 ATCGACGACACGAGCGGGCGGGCGGGCACCACACCGACCAGAGAGATGGGATGTGCAAGCCGTGG
193 ACCGACGA-A--A-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
11388805 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
254 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
11388843 TTGAAGTGTA
Statistics
Matches: 5739, Mismatches: 623, Indels: 382
0.85 0.09 0.06
Matches are distributed among these distances:
866 3 0.00
867 161 0.03
868 76 0.01
870 1 0.00
873 1 0.00
874 6 0.00
875 97 0.02
876 8 0.00
877 12 0.00
878 337 0.06
879 258 0.04
880 61 0.01
881 3 0.00
882 38 0.01
883 410 0.07
884 13 0.00
885 33 0.01
886 29 0.01
887 75 0.01
888 627 0.11
889 285 0.05
890 276 0.05
891 17 0.00
892 10 0.00
893 237 0.04
894 449 0.08
895 9 0.00
896 97 0.02
897 222 0.04
898 112 0.02
899 3 0.00
900 4 0.00
901 152 0.03
902 640 0.11
903 162 0.03
904 334 0.06
905 121 0.02
906 2 0.00
907 74 0.01
910 1 0.00
911 3 0.00
913 1 0.00
914 4 0.00
915 270 0.05
916 2 0.00
917 1 0.00
918 1 0.00
919 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
TGCTACCGTAACCCTGGTTCGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCC
CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGACG
ATGGTGCCACGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:11385874 original size:26 final size:26
Alignment explanation
Indices: 11385835--11385885 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11385825 TGGTCCGATC
*
11385835 TTAGACTGGGAATGAACTCCCTATGG
1 TTAGACTGGAAATGAACTCCCTATGG
*
11385861 TTAGACTGGAAATGAACTCCGTATG
1 TTAGACTGGAAATGAACTCCCTATG
11385886 CTTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCCTATGG
Found at i:11386767 original size:26 final size:26
Alignment explanation
Indices: 11386738--11386787 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11386728 CTGGTCCGAT
*
11386738 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
11386764 CTTAGACTGGGAATCAACTCCGTA
1 CTTAGACTGGGAATCAACTCCGTA
11386788 CGGGCGCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:11386922 original size:11 final size:11
Alignment explanation
Indices: 11386906--11386930 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11386896 TAGACTGGGA
11386906 ATGAACTCCGT
1 ATGAACTCCGT
11386917 ATGAACTCCGT
1 ATGAACTCCGT
11386928 ATG
1 ATG
11386931 CCTAAGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (11 bp):
ATGAACTCCGT
Found at i:11387641 original size:26 final size:26
Alignment explanation
Indices: 11387605--11387657 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11387595 CTAGTCTGAT
11387605 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11387631 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11387657 C
1 C
11387658 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11388423 original size:11 final size:11
Alignment explanation
Indices: 11388407--11388439 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
11388397 CGGTCAGGTT
11388407 CTCCGACGATG
1 CTCCGACGATG
11388418 CTCCGACGATG
1 CTCCGACGATG
11388429 CTCCGACGATG
1 CTCCGACGATG
11388440 GTGCCCCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:11390101 original size:26 final size:26
Alignment explanation
Indices: 11390063--11390115 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11390053 CTGGTCTGAT
* *
11390063 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
11390089 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
11390115 C
1 C
11390116 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:11390286 original size:26 final size:26
Alignment explanation
Indices: 11390248--11390300 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11390238 CTGGTCTGAT
* *
11390248 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11390274 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11390300 C
1 C
11390301 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11390361 original size:185 final size:185
Alignment explanation
Indices: 11390036--11390385 Score: 569
Period size: 185 Copynumber: 1.9 Consensus size: 185
11390026 CCAGCATGTG
* * *
11390036 CTACCGTAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTAGGA
1 CTACCATAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGA
*
11390101 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGA
66 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGCGCTTAGCCGGCCAGAGGGA
* *
11390166 CGGGATGCACAAGTCGAGGATCGGTCGGGTCCCTCCCTACGTGTTGCCGATCCTA
131 CGGGATGCACAAGCCGAGGATCGGTCAGGTCCCTCCCTACGTGTTGCCGATCCTA
* *
11390221 CTACCATAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGA
1 CTACCATAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGA
* *
11390286 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGTG-TTCAGTCGGCCAGAAGG
66 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGCGCTT-AGCCGGCCAG-AGG
*
11390350 G-CGGTATGCACAAGCCGAGGATCGGTCAGGTCCCTC
129 GACGGGATGCACAAGCCGAGGATCGGTCAGGTCCCTC
11390386 TCTATGTGCA
Statistics
Matches: 152, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
184 2 0.01
185 146 0.96
186 4 0.03
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (185 bp):
CTACCATAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGCGCTTAGCCGGCCAGAGGGA
CGGGATGCACAAGCCGAGGATCGGTCAGGTCCCTCCCTACGTGTTGCCGATCCTA
Found at i:11390579 original size:26 final size:26
Alignment explanation
Indices: 11390550--11390600 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11390540 CCGATCCGAT
* *
11390550 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGAGAATCAACTCCGTATC
11390576 CTTAGACTGAGAATCAACTCCGTAT
1 CTTAGACTGAGAATCAACTCCGTAT
11390601 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATC
Found at i:11390772 original size:26 final size:26
Alignment explanation
Indices: 11390736--11390787 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11390726 CAGTCCAAAA
*
11390736 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
11390762 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
11390788 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:11391080 original size:26 final size:26
Alignment explanation
Indices: 11391040--11391089 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
11391030 GATCTAATCT
*
11391040 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTAGGAATGAACTCCGTATGCC
* *
11391066 TAGACTAGGATTGAACTTCGTATG
1 TAGACTAGGAATGAACTCCGTATG
11391090 ACTAAGTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCC
Found at i:11391140 original size:488 final size:488
Alignment explanation
Indices: 11389904--11391249 Score: 1713
Period size: 487 Copynumber: 2.8 Consensus size: 488
11389894 ACACATAATA
* ** ** ** ** *
11389904 TGCGCACACCCCCCCAGCAGCCCCGATCGTCAGAACCCCAATGTTGCCAGTCAGGTTCTCCGGCG
1 TGCGCACACCCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACG
* * * * * *
11389969 ATGCTCCGACGGTGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
66 ATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGGCACCAACACATGCCCGAGCCTAGCATG
* * * * *
11390034 TGCTACCGTAACCCTC-GGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTA
131 TGCTACCGTAACCCTCAGTTC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTA
*
11390098 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAG
195 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * *
11390163 GGACGGGATGCACAAGTCGAGGATCGGTCGGGTCCCTCCCTACGTGTTGCCGATCCTACTACCAT
260 GGGCAGGATGCACAAGCCAAGGATCGGTCGGGTCCCTCCCTACGTGTTGCCGATCCTACTACCAC
** ** **
11390228 AACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACT
325 AACCCTCGATCCAGTCCAAAATTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACT
* ** *
11390293 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGTGTTCAGTCGGCCAGAAGGGCGGTATG
390 CCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCCGGTGTTCAACCGGCCAGAAGGGAGGTATG
*
11390358 CACAAGCCGAGGATCGGTCAGGTCCCTCTCTATG
455 CACAAGCCGAGGATCGGTCAGGTCCCCCTCTATG
* * * *
11390392 TGCACACA-CCCCCTGGCCCCCCCGATCGTTGGAACCCTAATGCCGCTGGTCAAGTTCTCCGACG
1 TGCGCACACCCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACG
* *
11390456 ATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATATGGCACCAACACATGCCCGAGCCTAGCATG
66 ATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGGCACCAACACATGCCCGAGCCTAGCATG
* * *
11390521 TGCTTCCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT-CCTTAGACT-
131 TGCTACCGTAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCC-TAGACTA
* * *
11390584 GAGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCAGA
195 G-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * **
11390649 GGGGCAGGATGCACAAGCCAAGGATCGGTCGGGTCCCTCTCTACGTGTTGCCGATCCTGCTGCTG
259 GGGGCAGGATGCACAAGCCAAGGATCGGTCGGGTCCCTCCCTACGTGTTGCCGATCCTACTACCA
* *
11390714 CAACCCTCGGTCCAGTCCAAAATTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGAATGAA
324 CAACCCTCGATCCAGTCCAAAATTAGACTGGGAATGAACTTC-GTATGCTTAGACTAGGAATGAA
*
11390778 CTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGTTCAACCGGCCAGAAGGGTAGG-
388 CTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCCGGTGTTCAACCGGCCAGAAGGG-AGGT
* *
11390842 ATGCACAAGCCGGGGA-CTGG-CTGGGTCCCCCTCTATG
452 ATGCACAAGCCGAGGATC-GGTC-AGGTCCCCCTCTATG
11390879 TGCGCACACCCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACG
1 TGCGCACACCCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACG
** *
11390944 ATGCTCCGACGATGGTGTTCCAACGAAGAAAAATACGGCACCAACACATGCCCAAGCCTAGCATG
66 ATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGGCACCAACACATGCCCGAGCCTAGCATG
* * *
11391009 TGCTGCCGCAACCCTCAGTTCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTAG
131 TGCTACCGTAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTAG
* * * * * **
11391074 GATTGAACTTCGTATGACTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTTGGCCAGAGG
196 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
** ** ** * * ** * * *
11391139 GGCAGGATAAACAAGCCGGGGATCGACCGAGACCC-CCTCTGTGTGCTGCCAATCCTGCTACCAC
261 GGCAGGATGCACAAGCCAAGGATCGGTCGGGTCCCTCC-CTACGTGTTGCCGATCCTACTACCAC
*** ** *
11391203 AACCCTCGATCC-GATTTGATCTTAGACTGGGAATGAACTCCGTATGC
325 AACCCTCGATCCAG-TCCAAAATTAGACTGGGAATGAACTTCGTATGC
11391250 CTAAGCTAAC
Statistics
Matches: 738, Mismatches: 107, Indels: 26
0.85 0.12 0.03
Matches are distributed among these distances:
486 6 0.01
487 412 0.56
488 316 0.43
489 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (488 bp):
TGCGCACACCCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACG
ATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGGCACCAACACATGCCCGAGCCTAGCATG
TGCTACCGTAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTAG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCAGGATGCACAAGCCAAGGATCGGTCGGGTCCCTCCCTACGTGTTGCCGATCCTACTACCACA
ACCCTCGATCCAGTCCAAAATTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACAAGCGTGCCGGTGTTCAACCGGCCAGAAGGGAGGTATGC
ACAAGCCGAGGATCGGTCAGGTCCCCCTCTATG
Found at i:11392461 original size:26 final size:26
Alignment explanation
Indices: 11392425--11392477 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11392415 GGTCTCAGAT
11392425 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
11392451 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
11392477 C
1 C
11392478 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:11392711 original size:492 final size:493
Alignment explanation
Indices: 11391517--11393003 Score: 2324
Period size: 492 Copynumber: 3.0 Consensus size: 493
11391507 TTTTTGGAAT
* * * *
11391517 GATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGAATTTTTGTT--GGCATCACAAAAAAATT
1 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGGC-GCACAAAAAAATT
* *
11391580 CAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
65 CAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACA
* * *
11391645 CTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
130 CTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTC
*
11391710 GAGGTTTGATGAGGGATAGGCGGCCA-ATATAAGGGCCAAGTAGCAGCACCCATTGCACATCATG
195 AAGGTTTGATGAGGGATAGG-GG-CATATATAAGGGCCAAGTA-C--CA-CCA---C-C--CA--
* * * * * * *
11391774 TACGCACACCCCCCCCGACCCTCCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGAC
246 -CCGCATACCCCCCCGGGCGC-CCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-C
** * * * * *
11391839 GATGCTCCGGTGAT-GTTGCCCCTGTGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCA
308 GATGCTCCGCCGATAG-TGCCCCGGTGAAGAAAAATTTGGCACCAAGACATGTCTGAGCCCAGCA
* * * *
11391903 TGTGCTGTCGCAATCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
372 TGTGCTG-CCCAACCCTCGGT-C-ATCAGATCTTAGACTGGGAATGAACTCTATATGCTTAGACT
*
11391968 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTTTTTCGAAAG
434 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGTTTTTCGAAAG
*
11392028 GATTTTTGGCCCCAAACTTGGTAGACGTGAACCTTGTA-TTTTTTTGGGGCGCACAAAAAAATTC
1 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGGCGCACAAAAAAATTC
11392092 AGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACAC
66 AGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACAC
11392157 TTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCA
131 TTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCA
11392222 AGGTTTGATGAGGGATAGGGGCATATATAAGGGCCAAGTACCACCACCCACCGCATACCCCCCCG
196 AGGTTTGATGAGGGATAGGGGCATATATAAGGGCCAAGTACCACCACCCACCGCATACCCCCCCG
11392287 GGCGCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGCCGATAGT
261 GGCGCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GCGATGCTCCGCCGATAGT
11392352 G-CCCGGTGAAGAAAAATTTGGCACCAAGACATGTCTGAGCCCAGCATGTGCTGCCCAACCCTCG
325 GCCCCGGTGAAGAAAAATTTGGCACCAAGACATGTCTGAGCCCAGCATGTGCTGCCCAACCCTCG
11392416 GTC-TCAGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCTGTATGCCT
390 GTCATCAGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCTGTATGCCT
11392480 AAGTCAACCCACGAAACAAGCGTGTGGGTTTTTCGAAAG
455 AAGTCAACCCACGAAACAAGCGTGTGGGTTTTTCGAAAG
*
11392519 GATTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTTTTGGGGCGCACAAAAAAATTC
1 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGGCGCACAAAAAAATTC
*
11392584 AGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTCCAAACAC
66 AGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACAC
11392649 TTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCA
131 TTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCA
*
11392714 AGGTTTGATGAGGGATAGGGGCATATATAAGGGCCAAGTACCACCACCCACAGCATA-CCCCCCG
196 AGGTTTGATGAGGGATAGGGGCATATATAAGGGCCAAGTACCACCACCCACCGCATACCCCCCCG
*
11392778 GGCGCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGTCGATAGT
261 GGCGCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GCGATGCTCCGCCGATAGT
**
11392843 GCCCCGGTGAAGAAAAATTCAGCACCAAGACATGTCTGAGCCCAGCATGTGCTGCCCAACCCTCG
325 GCCCCGGTGAAGAAAAATTTGGCACCAAGACATGTCTGAGCCCAGCATGTGCTGCCCAACCCTCG
* * *
11392908 GTCTGATCAGATCTTAGACTGGGAATGAACTTTGTATGCTTAGATTGGGAATGAACTCTGTATGC
390 GTC--ATCAGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCTGTATGC
*
11392973 CTAAGTCAACCCATGAAACAAGCGTGTGGGT
453 CTAAGTCAACCCACGAAACAAGCGTGTGGGT
11393004 GCTCAGCCGG
Statistics
Matches: 924, Mismatches: 42, Indels: 36
0.92 0.04 0.04
Matches are distributed among these distances:
491 204 0.22
492 275 0.30
493 1 0.00
494 11 0.01
495 133 0.14
496 53 0.06
497 17 0.02
500 2 0.00
502 1 0.00
503 1 0.00
506 3 0.00
507 2 0.00
509 3 0.00
510 24 0.03
511 191 0.21
512 3 0.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (493 bp):
GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGGCGCACAAAAAAATTC
AGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACAC
TTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCA
AGGTTTGATGAGGGATAGGGGCATATATAAGGGCCAAGTACCACCACCCACCGCATACCCCCCCG
GGCGCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCGATGCTCCGCCGATAGTG
CCCCGGTGAAGAAAAATTTGGCACCAAGACATGTCTGAGCCCAGCATGTGCTGCCCAACCCTCGG
TCATCAGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCTGTATGCCTA
AGTCAACCCACGAAACAAGCGTGTGGGTTTTTCGAAAG
Found at i:11392956 original size:26 final size:26
Alignment explanation
Indices: 11392920--11392972 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11392910 CTGATCAGAT
*
11392920 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
11392946 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11392972 C
1 C
11392973 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11393805 original size:26 final size:26
Alignment explanation
Indices: 11393776--11393828 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11393766 CCAGTCTGAT
* *
11393776 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
11393802 CTTAGGCTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
11393828 C
1 C
11393829 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:11394683 original size:26 final size:26
Alignment explanation
Indices: 11394645--11394697 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11394635 TTGGTCCAAT
* * *
11394645 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
11394671 CTTAGACTAGGAATTAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
11394697 C
1 C
11394698 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:11397252 original size:26 final size:26
Alignment explanation
Indices: 11397223--11397301 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
11397213 CCAGTCCGAT
11397223 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11397249 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11397275 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11397301 C
1 C
11397302 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11398183 original size:26 final size:26
Alignment explanation
Indices: 11398147--11398199 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11398137 TCGGTCCGAT
11398147 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11398173 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11398199 C
1 C
11398200 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11400297 original size:896 final size:899
Alignment explanation
Indices: 11396774--11400963 Score: 5603
Period size: 896 Copynumber: 4.6 Consensus size: 899
11396764 TTAAGCCTTC
* *
11396774 ACGGTTC-ATGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTGGACGTGAT
1 ACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
*
11396838 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTT
65 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
11396903 TACCATTCGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
130 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
11396968 TCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-CGGGGCCAATATAA
195 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * *
11397032 GGGCCAAGTACCAGCACCCATCGCTCATCAGGTGCGCACACCCCGCCGGCCCGCCCTATCGTCGA
260 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGG
* *
11397097 AACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAA
324 AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCC-AC--A-AAAAA
* *
11397162 TGTGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCAGTCCGATCTTA
385 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC----T-C-G---G----T-
*
11397227 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
436 --C------TG-A-TCC-GAT-CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
* * * * * *
11397292 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTC-TTTAACCGGCCAGAGGGGCGGG
489 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-CGCTCAGCCGTCCAGAGGGGCGAG
* * * * * ** * * ** **
11397356 ATGAGCAAGCCGAGTATCGGCCGGGTCCCCTTCTGCGTGCTGTCAATCCTACTGTCGTAACCCTC
553 ATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCAAGCTGTCGATCCTGCTACCACAACCCTC
* * * **
11397421 AGTCTGGTCTGATCTTAGACTGGAAATGAACTCTGTATGCCTAAGCCAACCGACGAAAATAACGG
618 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGG
* * * * * *
11397486 GTGGGCAGGCAGGCGGGCACTACGTCGGCCAGAGAGAGGGGATGCGCAAGCCTTGAATCGATAGG
683 GCGGGCAGGCAGGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
11397551 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTCTATGGCTTGTAA
748 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAA
*
11397616 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTT
813 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
11397681 TTCATGATTTTTGAAACTTTTT
878 TTCATGATTTTTGAAACTTTTT
* * * *
11397703 ATGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
1 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
11397768 CTTTTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAACTGTACAAGATTGTGTG
66 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
11397833 ACCATTTG-AAAAAGTGTCCCCATTTCACACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
131 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
11397897 CTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG-CAATATAAG
196 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * **
11397961 GGTCAAGTACCTGCACCCATCGCACATCATGTGCATACA-CCCCCCGGCCCCCCGAT-GTCGGAA
261 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAA
* * *
11398024 CCCCAATGCCGTCGATCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGGTGA-AGAAAAAT
326 CCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCC----ACA-AAAAAT
* * * *
11398088 GCGGCACTAGCACATGCCCAAGCCCAGCATGTGCTGCC-CAACCCTCGGT-TCGGTCCGATCTTA
386 GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GATCCGATCTTA
*
11398151 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGA
450 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* *
11398216 AACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGC-AGGATGCGCAAGCCGGGGATCGATCGGGT
515 AACGAGCGTGCGGGCGCTCAGCCGTCCAGAGGGGCGA-GATGCGCAAGCCGGGGATCGACCGGGT
** * * * *
11398280 CCCCCTCTGCGTGCTGTCGGTCCTGCT-GCAGCAACCCTCGGTCTGGTCCGATCTTAGTCTGGGA
579 CCCCCTCTGCAAGCTGTCGATCCTGCTACCA-CAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
* * * *
11398344 ATGAACTCTGTATGCATAAGCCAACCGACGAAACGAACGGGCGGGC--G--GGCGGGCACCACGT
643 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCAGGCAGGCGGGCACTACGC
*
11398405 CGGCCAGAGAA-ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATC
708 CGGCCAGA-AAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
11398469 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
772 TTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
11398534 TTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTTTAAACTTTTT
837 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * * * *
11398597 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAA-GAGTTTTGTCCCCAATCGTGGTAGCCGTGATT
1 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
11398661 CTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCCAAGTGTACAATATTTTGTG
66 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * * * *
11398726 GCCATTTGAAAAAAGTGTCCCCATTTTAGACAATTTAATTGCTACTAGCAGCAAACCTATAAAAT
131 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
11398791 CTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATGTAAG
196 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
11398856 GGCCAAGTACCAGCACCCATCGGACATCATGTGCGTACCCCACCCACCCTCGGCCCCCCCGATCG
261 GGCCAAGTACCAGCACCCATCGCACATCATGTGCG---CACACCC-CCC-CGG-CCCCCCGATCG
* **
11398921 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACAAAGA
320 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCC-AC--A-A
* * * **
11398986 AAAATGTGGCACCAGGACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCTGATTTGAT
381 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGAT
* *
11399051 CTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCTTAAT-CCTAAGTCAACC
446 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT-ATGCCTAAGTCAACC
* * *
11399115 CACGAAACGAGCGTACGGGCGCTCAGTCGTCCAGAGGGGCGAGATGTGCAA-CTCGGGGATCGAC
510 CACGAAACGAGCGTGCGGGCGCTCAGCCGTCCAGAGGGGCGAGATGCGCAAGC-CGGGGATCGAC
* *
11399179 CGGGTCCCCCTCTGCAAGCTGTCGATCCTGCTACCACAACCC-CTGGTCCGATCTGATCTTAGAC
574 CGGGTCCCCCTCTGCAAGCTGTCGATCCTGCTACCACAACCCTC-GGTCTGGTCTGATCTTAGAC
* * * * *
11399243 TGGGAATGAACTCCGTATGCCTAAGCAAACCGATGAAACGAGCGGGCGGGCGGGCAGGCAGGCAC
638 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCAGGCAGGCGGGCAC
* * * *
11399308 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGAGGGTTTTGGGA
703 TACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
11399373 CATCTTCATATTTCTGCATGCGAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
768 CATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
11399438 AGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTT
833 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
11399503 TT
898 TT
* *
11399505 -CGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAGGTGATC
1 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
11399569 CTTGTATTTTTGTTGGCATG-ACCAAAAAACTTCAGCTAAAAACTCCAAGTGTACAAGATTTTGT
66 CTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * *
11399633 GACCGTTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGTAGCAAGCCTGTAAAA
130 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
11399698 TCTCGAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
195 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
11399763 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCACCCCGATCGCCGG
260 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC-CCCCGATCGTCGG
* * *
11399828 AACACCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG-CCC-C-AAAAATGTG
324 AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCACAAAAAATGTG
* * *
11399890 GGACCACCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACT
389 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACT
* * *
11399955 GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCTTAAT-CCTAAGTCAACCCACGAAAC
454 GGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT-ATGCCTAAGTCAACCCACGAAAC
* * * * *
11400019 GAGCGTGCGGGCGCTCAGTCGTCCAGAGGGGTGAGATGCGCAA-CTCGGGAATCGACCGAGTCAC
518 GAGCGTGCGGGCGCTCAGCCGTCCAGAGGGGCGAGATGCGCAAGC-CGGGGATCGACCGGGTCCC
* *
11400083 CCTCTGCAAGCTG-CTGATCCTGCTACCACAACCCTTGGATC-GGTCTGATCTTAGATTGGGAAT
582 CCTCTGCAAGCTGTC-GATCCTGCTACCACAACCCTCGG-TCTGGTCTGATCTTAGACTGGGAAT
* * * *
11400146 TAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCAGGCGGGCGGGCACTACGCCG
645 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCAGGCAGGCGGGCACTACGCCG
* * *
11400211 GCCAGAAAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCC
710 GCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
11400276 ATAATTCTACATGCCAATACCATTTTTTTGGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTC
775 ATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * **
11400340 ACGTGAAGTTTAATGGCAAGATGAC-AGAATTTCTATTTTTCATGATTTTCAAAAC-TTTT
840 ACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * * *
11400399 AGCGGTTCGGGATTTTTTAAACTTTTTTTGAAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGAT
1 A-CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
11400464 CCTTGTATTTTTCTTGGCATGCACAAAAAAATTGAGCTAAAAACTTGAAGTGTACAAGATTTTGT
65 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
11400529 AACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
130 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
11400594 TCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAA
195 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
11400658 GGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CCCCCCGG-CCCCCGATCGTCGGA
260 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGA
* * ** *
11400721 ACCCAAATGCCGTTGGTCAGGTTCTCCGACGATGCTACGGCGATGGTGCCCCGACGAACAAAAAT
325 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCC-AC--A-AAAAAT
* ** * * *
11400786 GTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTATCGAAACCCTCGGTGC-GATTCGATCTTT
386 GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGATCCGATCTTA
* *
11400850 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
450 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * *
11400915 AATGAGCGTGCGGGCACTCAGCCAG-CCAGAGAGACGGGATGCGCAAGCC
515 AACGAGCGTGCGGGCGCTCAGCC-GTCCAGAGGGGCGAGATGCGCAAGCC
11400964 TCGGTCTGGT
Statistics
Matches: 2923, Mismatches: 282, Indels: 142
0.87 0.08 0.04
Matches are distributed among these distances:
892 53 0.02
893 96 0.03
894 335 0.11
895 150 0.05
896 632 0.22
897 5 0.00
898 215 0.07
899 160 0.05
900 12 0.00
901 4 0.00
902 15 0.01
903 156 0.05
904 229 0.08
905 12 0.00
906 1 0.00
907 31 0.01
908 426 0.15
911 1 0.00
915 1 0.00
918 1 0.00
919 1 0.00
920 1 0.00
924 5 0.00
925 94 0.03
926 5 0.00
927 10 0.00
928 144 0.05
929 128 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAA
CCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCACAAAAAATGTGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGG
GAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAGCCGTCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTC
TGCAAGCTGTCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCAGGCAGGCGGGCACTACGCCGGCCAGA
AAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
Found at i:11401060 original size:107 final size:107
Alignment explanation
Indices: 11400872--11401070 Score: 287
Period size: 107 Copynumber: 1.9 Consensus size: 107
11400862 ACTCCGTATG
* * *
11400872 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCGGGCACTCAGC
11400937 CAGCCAGAGAGACGGGATGCGCAAGCCTCGGTCTGGTCCGAT
66 CAGCCAGAGAGACGGGATGCGCAAGCCTCGGTCTGGTCCGAT
* *
11400979 CTTAGATTGGGAATGAACTCCGTATGCCTAAG-CGAACCGAC-AACACGAGCGGGCGGGCACT-A
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAA-ACGAGCGGGCGGGCACTCA
* *
11401041 CGCCGGCCAGAGAGTCGGGATGCGCAAGCC
64 -GCCAGCCAGAGAGACGGGATGCGCAAGCC
11401071 GTGGATCGAT
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
106 4 0.05
107 78 0.95
ACGTcount: A:0.26, C:0.28, G:0.31, T:0.16
Consensus pattern (107 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCGGGCACTCAGC
CAGCCAGAGAGACGGGATGCGCAAGCCTCGGTCTGGTCCGAT
Found at i:11401739 original size:26 final size:26
Alignment explanation
Indices: 11401687--11401739 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11401677 CCGGTCCGAT
* *
11401687 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGCATG
*
11401713 CTTAGACTAGGAATTAAC-TCTGCATG
1 CTTAGACTAGGAATGAACTTC-GCATG
11401739 C
1 C
11401740 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGCATG
Found at i:11402141 original size:26 final size:26
Alignment explanation
Indices: 11402107--11402157 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
11402097 TTTTCTATTT
* *
11402107 TTCATGATTTTCGAAACTTTTTTCGA
1 TTCAAGATTTTCGAAAATTTTTTCGA
**
11402133 TTCAAGATTTTTTAAAATTTTTTCG
1 TTCAAGATTTTCGAAAATTTTTTCG
11402158 GAAGGAGTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.12, G:0.10, T:0.53
Consensus pattern (26 bp):
TTCAAGATTTTCGAAAATTTTTTCGA
Found at i:11402609 original size:26 final size:26
Alignment explanation
Indices: 11402580--11402632 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11402570 CTAATCCGAT
*
11402580 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11402606 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11402632 C
1 C
11402633 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11403598 original size:26 final size:26
Alignment explanation
Indices: 11403562--11403612 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11403552 GTTGACTTTG
*
11403562 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
11403588 GCATACGGAGTTCAATCCCAGTCTA
1 GCATACGGAGTTCAATCCCAGTCTA
11403613 CGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:11404733 original size:815 final size:814
Alignment explanation
Indices: 11403166--11404765 Score: 2341
Period size: 815 Copynumber: 2.0 Consensus size: 814
11403156 CTCGAACAGC
11403166 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
11403231 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
*
11403296 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGGCG
* * * * * *
11403361 TAGTACCCGCCCGCCCGTCCACTCATTTCGTCGTTTGGCTTAGGCATACGGAGTTCATTCCTAAT
196 TAATACCCGCCCGCCCGTCCACTCATTTCCTCGGTTGGCATAGGCATACAGAGTTCATTCCCAAT
* ** * **
11403426 CTAAGAACGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCAGCC
261 CTAAGAACGAACCAGACCGAGGGTTGCAGCAACAGGATCGGCAGCACACAGAGGGGGACCCAGCC
* * * *
11403491 GATCCCCGGCTTGTGCATCCCACCCCTCTGTCGGCTGAGCGCCCGCACGCTCGTTTCGTCGGTTG
326 GATCCCCGGATTATGCATCCCACCCCTCTGGCGGCTGAGCACCCGCACGCTCGTTTCGTCGGTTG
* * *
11403556 ACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAATCCCAGTCTACGATCGGA
391 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAATCCCAATCTAAGATCGGA
* *
11403621 CCGGACCGAGGGTTAGGGCAGCACATGCTAGGCTTCGGCATGTGCTGGTGCCGTATTTTTCTTCG
456 CCAGACCGAGGGTTAGGGCAGCACATGCTAGGCTTCGGCATGTGCTGATGCCGTATTTTTCTTCG
* * * *
11403686 TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG
521 TCGGGGCACCATCGCCGAAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG
11403751 GGGGGGCCGGGGGGGTGTACACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
586 GGGGGGCCGGGGGGGTGTACACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * *
11403816 CCCCTATCCCTCTTCAAACCTCGAGAACTCACATCCCCTCAAAAAGGCATTTAGATTTTATAGTT
651 CCCCTATCCCTCATCAAACCTCGAGAACACACACCCCCTCAAAAAGGCATTTAGATTTTACAGTT
* * *
11403881 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTGAAATGGTCACAAAATCTTG
716 TCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTG
11403945 TACACAAAATCTTTTTTGAAATGGTCTGAAACGT
781 TACACAAAATCTTTTTTGAAATGGTCTGAAACGT
* *
11403979 AAAAAGTTTC-AAAATCGTGAAAAAATAGTAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAG
1 AAAAAGTTTCAAAAATCGTG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
11404043 GCTTAAGGGACCATTTGT-TGAA-TTACAAGCCATAAAAATGGCATTGGCACGCAGAAA-ATGGA
65 GCTTAAGGGACCA-TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* *
11404105 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTTTCTGGCCGG
129 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGG
* * * **
11404170 TGTAATGCCCGCCTGCCTGCCCG-CTCGCTTGTTTCCTCGGTTGGCATAGGCATACAGAGTTCAT
194 CGTAATACCCG-C--CC-GCCCGTC-CACTCATTTCCTCGGTTGGCATAGGCATACAGAGTTCAT
* * * *
11404234 TCCCAGT-TGAAGATCGAACCAGACTGAGGGTTGCAGCAACAGGATTGGCAGCACACAGAGGGGG
254 TCCCAATCT-AAGAACGAACCAGACCGAGGGTTGCAGCAACAGGATCGGCAGCACACAGAGGGGG
* * * *
11404298 ACCCGGCTGATCCCCGGATTATGCATCCCACCCCTCTGGCTGGCTGAGTACTCGCACGCTCGTTT
318 ACCCAGCCGATCCCCGGATTATGCATCCCACCCCTCTGGC-GGCTGAGCACCCGCACGCTCGTTT
* * * *
11404363 CGT-GTGTTGACTTAGGCGTAC-GAGTTCATTCCCAGTCTAAGCATATGGATTTCATTCCCAATC
382 CGTCG-GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAATCCCAATC
* *
11404426 TAAGATTGGACCAGACCGAGGGTT-GTGGCAGCACATGCTGGGC-TCGGGCATGTGCTGATGCCG
446 TAAGATCGGACCAGACCGAGGGTTAG-GGCAGCACATGCTAGGCTTC-GGCATGTGCTGATGCCG
*
11404489 TATTTTTCTT-G-CTGGGGCACCATCGCCGAAGCATCGCCGAAGAACCTGACTGACGGC-TT-GG
509 TATTTTTCTTCGTC-GGGGCACCATCGCCGAAGCATCGCCGAAGAACCTGACCGACGGCATTGGG
* * * *
11404550 GTTCCAGGCGATCGGGTGGGCCGGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
573 GTTCC-GGCGATCGGGGGGGCCGGGG-GGGTGTACACAAATGATGTGCGATGGGTGCTGGTACTT
* *
11404615 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACACCCCCTTAAAGA-GCAT
636 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACACCCCCTCAAAAAGGCAT
* *
11404679 TTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGGATTGGGGACACTTTTTTCAA
701 TT-AGATTTTACA-GTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
11404744 ATGGCCACAAAATCTTGTACAC
764 ATGGCCACAAAATCTTGTACAC
11404766 TTCAAGTTTT
Statistics
Matches: 703, Mismatches: 66, Indels: 33
0.88 0.08 0.04
Matches are distributed among these distances:
811 74 0.11
812 52 0.07
813 97 0.14
814 150 0.21
815 264 0.38
816 66 0.09
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (814 bp):
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGGCG
TAATACCCGCCCGCCCGTCCACTCATTTCCTCGGTTGGCATAGGCATACAGAGTTCATTCCCAAT
CTAAGAACGAACCAGACCGAGGGTTGCAGCAACAGGATCGGCAGCACACAGAGGGGGACCCAGCC
GATCCCCGGATTATGCATCCCACCCCTCTGGCGGCTGAGCACCCGCACGCTCGTTTCGTCGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAATCCCAATCTAAGATCGGA
CCAGACCGAGGGTTAGGGCAGCACATGCTAGGCTTCGGCATGTGCTGATGCCGTATTTTTCTTCG
TCGGGGCACCATCGCCGAAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG
GGGGGGCCGGGGGGGTGTACACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACACACACCCCCTCAAAAAGGCATTTAGATTTTACAGTT
TCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTG
TACACAAAATCTTTTTTGAAATGGTCTGAAACGT
Found at i:11406540 original size:26 final size:26
Alignment explanation
Indices: 11406503--11406556 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
11406493 GGTCTGATCT
*
11406503 TAGACTGTGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
11406529 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
11406555 TA
1 TA
11406557 TGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:11407445 original size:26 final size:26
Alignment explanation
Indices: 11407409--11407461 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11407399 GTCTGATCTA
*
11407409 AGACTGTGAATGAACTCCGTATGCCT
1 AGACTGGGAATGAACTCCGTATGCCT
*
11407435 AGACTGGGAATGAACTCTGTATGCCT
1 AGACTGGGAATGAACTCCGTATGCCT
11407461 A
1 A
11407462 TGTCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCCT
Found at i:11408016 original size:906 final size:905
Alignment explanation
Indices: 11406255--11417742 Score: 8401
Period size: 904 Copynumber: 12.6 Consensus size: 905
11406245 NNNNNNNNNN
* * * *
11406255 TTAAAGGGGTGTGAAGTTTTCTCGAGGGTTGATAAGGGATTAGGGGGCCAATATAAGGGCAAAGT
1 TTAAGGGGGTGTG-AG--TTCTCGAGGTTTGATGAGGGA-TAGGGGGCCAATATAAGGGCCAAGT
* * * * *
11406320 ATCGGCACCCACCGCACATCATTTGCGCACA-CCCCC-CAGCCCCCCCGATCGTCGGAACCCCAA
62 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAA
* * * * * **
11406383 TGCCGCCGGTCAGGTTCTCTGATGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGTAGCAC
127 TGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCAC
* *
11406448 CAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGTGA
192 CAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
* *
11406513 ATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACG-AACGAGCG
257 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * *
11406577 TGCCGACGCCCAACCGGCCAGAGGCGTGATATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTA
322 TGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTA
* * * * * ** * * * *
11406642 TGTACTGTCGATCCTGCTGCCACAACCTTTGGTCCAGTCCGATCTTAGACAGGGAATGAACTTCA
387 CGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * *
11406707 TATTCCTAAGCCAACCGACGAAACGAGCGGGCGGAC-GAGCGGGCGAGCACTACGTCGGCCAGAG
452 TATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGGA-CGGGCGGGCACTACGCCGGCCAGAG
*
11406771 AGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
516 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
11406836 TGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
581 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *
11406901 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGAC
646 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGAT
* *
11406966 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTG
711 TTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
11407031 TTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACACGATTTTGTTACCATTTGAAAA
776 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* ** * * *
11407096 AAGTGTCGCCATTTCAGACACTTTAATTACTACTGGCAGCAAACTTGTAAAATCCCAAATGCTGT
841 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
11407161 TTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGCATAAGGGGCCAATATAAGGGCCAAGTACCA
1 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
**
11407226 GCACCCATCGCACATCATGTGCGCACACCCCCCCTCGGCCCCCCCGATCACCGGAACCCCAATGC
66 GCACCCATCGCACATCATGTGCGCACA-CCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGC
* * * * * * * *
11407291 TGTCGGCCAGCTTCTCCGAAGATGCTTCGATGATGGTGCCCCGATGAAGAAAAATACAGCACCAG
130 CGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAG
* * *
11407356 CACATGCCCGAGCCCAGAATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTAAGACTGTGAATG
195 CACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
* * * **
11407421 AACTCCGTATGCCTAGACTGGGAATGAACTCTGTATGCCTATGTCAACCCATAAAACGAGCGTGC
260 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * * * * **
11407486 CGGCGCCCAACCGGCTAGAGGGGCGATATGCACAAGCCGGGGATCGATCGAGTCCCCCTCTGTGT
325 GGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTACGT
* * * *
11407551 GCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTAT
390 GCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
11407616 TCCTAAGCCAACCGACGAAACGAGTGAGCGGACGGACGGGCTGGCACTATGTCAGCCAAAGAGAC
455 GCCTAAGCCAACCGACGAAACGAGCGAGCGGACGGACGGGCGGGCACTACGCCGGCCAGAGAGAC
* *
11407681 GGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
520 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
*
11407746 TGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
585 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
11407811 CATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTT
650 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTT
* * *
11407876 TAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTATATGTGATCTTTGTATTTTTGTTGG
715 TAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
11407941 CATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACATGATTTTGTGACCATTTGGAAAAAGT
780 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
11408006 GTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGT
845 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * *
11408067 TTAAAGGGGTGTGAGTTCTCGAGGTTTAATGAGAGATAGGGGGCCAATATAAGGGCCATGTACCA
1 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * * *
11408132 GCACCTATCGCACATCATGTGCGCACACCCCACT-GACCACGCCGATCGCCGGAACCCCAATGCC
66 GCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * **
11408196 GCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGC
131 GTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGC
* * * * * ***
11408261 ACATGCCCGAGCCTAGCATATGCTGCTGCATCCCTTGGTCTGGTTTGATCTTAGACTATAAATGA
196 ACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
* * * * * * *
11408326 ACTCCGTATGCCTAGACTGGGAATGAACTCTGTATTCCTATGTTAACCCACGAAACGAGGGTGCC
261 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
** * * * * **
11408391 GATGCCCAGCCGGCCAGAGGCGTGATATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTGTGTG
326 GGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTG
* * *
11408456 CTGCCGATCCTACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATT
391 CTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
11408521 CCTAAGCCAACCGATGAAACAAGCGAGTGGACGAACGGGCGGGCGCTACGTCAGCCAGAGAGACG
456 CCTAAGCCAACCGACGAAACGAGCGAGCGGACGGACGGGCGGGCACTACGCCGGCCAGAGAGACG
* * **
11408586 GGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGT
521 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
*
11408651 GCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
586 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
*
11408716 ATGGCAAGACGACTCATTTTCTATTTTTCACGA-TTTTGAAACTTTTTGCGGTTTGGGATTTTTT
651 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTT
* * **** * * *
11408780 AAAATTTTTTTGGAAGGAGTTTTGGAAAAAAACTTGGTATATGTGATCATTGTATTTTTGTTGGC
716 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
11408845 ATGTACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACACGATTTTGTGACCATTTGGAAAAAGTG
781 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
11408910 TCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGT
846 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * * *
11408970 TTAAAGGGGTGTGAGTTCTCGAGGTTTAATGAGAGATAGAGGGCCAATATAAGGGCCAAGTACAA
1 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * ** *
11409035 GCACCTATCGCACATCATGTGCGCACACCCCACT-GACCACGTCGATCGTCGGAACCCCAATACC
66 GCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * * *
11409099 GTCGGTCAGGTTCTCTGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGC
131 GTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGC
* * * * * *
11409164 ACACGCCCGAGCCCAGCATGTGCT-ATCACAACCCTCGGTCTAGTTTGATCTTAGACTGTGAATG
196 ACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
* *
11409228 AACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
260 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * ** * *
11409293 AGGCGCTCAGCCGACCAGAGGGGCGAGATGTGCAAGTCGAGGATCGGTTGGGTCCCCCTCTACGT
325 GGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTACGT
* * * * * * *
11409358 GCTGCCGATCTTGCTACCTCAACCTTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTTCGTAT
390 GCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * ** *
11409423 GCCTAAGCCAACTGACGAAAC-A---AGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGAC
455 GCCTAAGCCAACCGACGAAACGAGCGAGCGGACGGACGGGCGGGCACTACGCCGGCCAGAGAGAC
* * *
11409484 AGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTACA
520 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
*
11409549 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG-TT
585 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * ** *
11409613 CATGGCAAGACGGCTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTT
650 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTT
* * *
11409678 TAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTGTTGG
715 TAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
11409743 CATG--GAAAAAAATTCAGTTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
780 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
11409806 GTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCT
845 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
11409867 TT-AGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCA
1 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
** * *
11409931 GCACCCATCGCACATCATGTTTGCACACCGCCCGCTCGGCCCCCCCGATCGTCGGGACACCAATG
66 GCACCCATCGCACATCATGTGCGCACACC-CCC-CTCGGCCCCCCCGATCGTCGGAACCCCAATG
* * * * *
11409996 CCGTCGGTAAAGGTTCTCC-AGTGATGCTCC-AGTGATGGTGCCCCCGACGAAGAAAAAATACGG
129 CCGTCGGT-CAGGTTCTCCGA-CGATGCTCCGA-CGATGGTG-CCCCGATGAAG-AAAAATGCGG
* * * * * * **
11410059 CACCAGCAACATTGCCCCAAGCCCAGCATGAGCCTACCGCAACCCTCAGTCTGATCCCAATCTTA
189 CACCAGC-ACA-TG-CCCGAGCCCAGCATGTG-CTGCTGCAACCCTCGGTCTGGT-CTGATCTTA
* *
11410124 GACTGGGAATGAACTCCGTATGATTAGACTCGGGAAGATGAACTCCGTATGCTTAAGTCAACCCA
249 GACTGGGAATGAACTCCGTATGCTTAGACT-GGG-A-ATGAACTCCGTATGCCTAAGTCAACCCA
** * * ** * * *
11410189 TAAAAACGAGTGTGCGGAGGCGCTCAG-AGGCCAGA-AAGCAGCGATG-GCAAGTCG-GGATTCG
311 -CGAAACGAGCGTGC-G-GGCGCTCAGCCGGCCAGAGGGGC-GAGATGCACAAGCCGAGGA-TCG
* * ** * * * *
11410250 AG-CGGGTTCCCCCTCTGCCATTGCTATCGATCCTGCTACTCGCAAACCCTCCGTCCGCTCCAAT
371 -GTCGGG-TCCCCCTCT-AC-GTGCTGCCGATCCTGCTGC-CGC-AACCCTCAGTCCGGTCCGAT
** * * * * * *
11410314 CTTAGACTGGGAATGAACTCCGTATGCCTAAAACAACGGACAAAACGAGTGGGCAGG-CGGGCAG
430 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGC-GGACGGACGG
* ** * * * * *
11410378 ACAAGCACTATGCTGGCTAGAGAGACGGGTATGC-CGAGATCCGGTGGATCGATAGGGTGGTTGG
494 GCGGGCACTACGCCGGCCAGAGAGACGGG-ATGCGC-A-AGCC-GTGGATCGATAGGGTGGTAGG
* * * * * * * *
11410442 TGGGTTGCA-GTACCATTCTTCCTACTTT-TGCGTACCAAAGCCCATTTTTATGGCTTGCAAA-T
555 TGGGTT-TAGGCA-CA-TCTTCATA-TTTCTACATGCCAATG-CCATTTTTATGGCTTGTAAATT
* * * *
11410504 CATACAATGGTCCCCTAAGCCTTCACATTGAAGTTTCATTGGCAAAATGACTCGTTTTCTATTTT
615 CATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCA-TGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
11410569 TCATGATTTTTGAAACATTTTAC-GATTCGGATTTTTTAAATTTTTTTCG-AA-GATGTTTTGGC
678 TCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGA-GTTTTGGC
*
11410631 CCCAAACTT-GTAGGCGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAAC
742 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
11410694 -CGAAGTGTACAAGATTTTGTGACCATATG-AAAAAGTGTCCCTATTTAAGACACTTTTAATGCG
807 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC-TTTAATG-G
* *
11410757 CTGCTGGCCAGCAAACCTGTAAAATCTCAAACGCTCT
870 CTACTGG-CAGCAAACCTGTAAAATCTCAAATGCTCT
*
11410794 TTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
1 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * **
11410859 GCACCCATCGCACATCATGTGTGCACA-CCCCC-CAG-CCCCCAGATCGTCGGAACCCCAATGAT
66 GCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * *
11410921 GCCGGTCAGGTTCTCTG-CGATG----G-C-A-----CCCCGGTGAAGAAAAATACGGCACCAGC
131 GTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGC
* * * * *
11410974 ACATGCCCAAGCCCAGCAAGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTTGACTGGGAATGA
196 ACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
* * * * *
11411039 ACTTCATATGCTTAGACTAGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCATGCG
261 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * ** * * * * * *
11411104 GGCGTTCAGACGACTGGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTG
326 GGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTG
** ** * * *
11411169 CTGCTAATCCTGCTGCCATAACCCTCAGTTCGGTCCGATCTTATACTGGGAATGCACTCCGTATG
391 CTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
11411234 CCTAAGTTAACCCACGAAAC-A---AGCGTG-CGG-C--GC--TCA--A--CCAGCCAGAG-GAA
456 CCTAAGCCAACCGACGAAACGAGCGAGCG-GACGGACGGGCGGGCACTACGCCGGCCAGAGAG-A
* * * ** ** * * * * * * * **
11411284 CGGGATGCGCAAGTCAG-GGATCGGTTGGGTCCCCCTCTGTGTG-CT-GTC-GATCCTGATGTCG
519 CGGGATGCGCAAG-CCGTGGATCGATAGGGT---GGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * * * * * * * * * * *
11411345 CAACCCTCGGTCTA-GTCCATTCTTA-GACTAG-GAA-TGA-AC-TTCGTATGCC-TAAGCC--A
580 CTA-CAT--GCCAATG-CCATTTTTATGGCTTGTAAATTCATACAAT-G-GTCCCTTAAGCCTTC
** * * ** * **** *** * ** * ***
11411401 ACTGATGAAACG-AGCA-GGC-GGGCGGGTGGGCGGGC-ACTTCGCCAGCCA---GAGAGACAGG
639 AC-G-TG-AA-GTTTCATGGCAAGACGACT-CGTTTTCTA-TTTTTCA-CGATTTTTGAAACTTT
* *** ** * *** ** * ** * * * ** **
11411459 ATGCGCGAGCCGTGGA---TCGATAGGGTGGTAG-GTGG-G-TTTGGGCAC-ATCTTCTTATTTC
697 TTGCG-G-TTTG-GGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA-GAC
* * * * * * * * ** *
11411517 -TGCATGCCAATGCCATTTTT-ATGGCTTGTA-AATTCATACAATGGTC-CCTGAAGCCTTC-AC
758 GTG-AT-CC-TTG-TATTTTTGTTGGCATGCACAA---A-AAAAT--TCAGCTAAAAAC-TCGAA
* *** ** * * * *
11411577 GTG---AAG-TTTCATGGCAAGACGGCTCATTT--TTTATTTTTCTCGATTTTCA-AAACTTT--
812 GTGTACAAGATTT--T-G--TGA---C-CATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAA
* * ** *** * * *
11411633 T---TACAGTTC-GGGATTTTTTAAAATTTTTCGAAAGGCGTTCT
867 TGGCTACTG-GCAGCAAACCTGTAAAA--TCTC-AAATGC--TCT
** **** ** * * * ****** *
11411674 CGCCCCAA-ACTTTGTAGACGTGATC-CGTGTATTTTTGTTCGCATGGACAAAAAAATTCAGCTA
1 ----TTAAGGGGGTGT-GA-GT--TCTC--G-AGGTTTGAT-G-A-GG-GATAGGGGGCCA-ATA
* * * * * * ** * ** * * * * **
11411737 AAAAGTCAAAGTGTACAAG-ATTTTGTGACCATTTCAAAAAAGTGTCCCCATTCCAAACACTTTA
50 TAAGGGCCAA--GTACCAGCA-------CCCATCGCACATCA-TGTGCGCA---C-ACCCCCCT-
** ** ** * ** * * ** * * ** * * *
11411801 ATAGCTACTGGCAGCAAACCTGT-AAAATCTCAAATG-C-TCTTTAAAGTGGT--G-TGA-GTTT
100 -CGGC--C---CCCCCGATC-GTCGGAA-CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* * * *** * * * *
11411859 CGAGGTTTGATG-AGGGATAGGAGGCCAATATAA-G-GGC-CAAGTACCA-GCAACC-ATCGCAC
157 CGACG-ATGGTGCCCCGAT--GAAG--AA-A-AATGCGGCACCAGCA-CATGC--CCGA--GCCC
* ** **** * ** *** * *
11411918 ATCATGTGC-G-TAGACCCCTCCTCGG-CCCCCCCGATCGCCAGAAC-CCCAATG-CCGTCGGTA
210 AGCATGTGCTGCT-G-CAAC-CCTCGGTCTGGTCTGATC-TTAG-ACTGGGAATGAAC-TCCGTA
* * ** * * * * *** * *
11411978 AGGTT---CTCCG-ATGATGCTCCG-ACG-AT-GGTGC--CCCGAC-AAA-GAAAAATG-TGGCA
269 TGCTTAGACTGGGAATGA-ACTCCGTATGCCTAAGT-CAACCC-ACGAAACG-AGCGTGCGGGCG
* * * * * * * ** * **
11412031 C-CAGCACATGCCTGA--GCCCATCATGTAC-TGCCGCAACCATCGGTTC-GAT-CCGATCTTA-
330 CTCAGC-C-GGCCAGAGGGGCGA-GATGCACAAGCCG--AGGATCGG-TCGGGTCCCCCTC-TAC
* * * ** * **** * * *
11412089 GAT--TG-GGA--ATGACT-CCGTATGCCTAAGTCAACCCACGAAAC-GAG-CGTGCGG-GTG--
388 G-TGCTGCCGATCCTG-CTGCCGCAACCCTCAGTCCGGTC-CG-ATCTTAGAC-TG-GGAATGAA
* ** * * ** * * * * * *
11412143 CTCAGTCGGCC--AG--AA-GGGCGGGATGCGCAAGCCGGA--GATTGGTCGGGTC-C--CCCTC
447 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAG-CGGACGGA-CGGGCGGG-CACTACGC-C
* ** * * ** * * * ** * ** * * * *
11412198 TGCGTGTGCCGATCCTGCTACCGCAA-CCCTCGG-TCTGATCTGATCTTAGACTAGG--AATG-A
508 GGCCAGAG-AGA-CGGGAT-GCGCAAGCCGT-GGATC-GATAGGGTGGTAG-GTGGGTTTAGGCA
* * * **** * ** ****** *** * * *
11412258 -A-CTCCGTATTCCTA-A-GCCAA--CCGA-CGAAACGAGCAGGCGGGCGGGCGGGCGGACGGGC
567 CATCTTCATATTTCTACATGCCAATGCC-ATTTTTATG-GC--TTGTAAATTCATAC-AATGGTC
* ** **** * * **
11412316 AC--AA-CAC--CGACCAGAGAGACAGAATGCGCAAGCCGTGGA-TCGATAGGGTGGTAGGTGGG
627 CCTTAAGC-CTTC-ACGTGA-AG-TTTCATG-GCAAGAC---GACTCG-T---TTTCTA--T---
* * * * * *** ** *** *
11412375 TTTAGGCAC-A-TCTTCATA-TTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCAGAC
675 TTT--TCACGATTTTTGAAACTTTTTGC--G-GTTTGGGATTTTTTA-AAATT-T--TTTC-GA-
* ** * * * ** * *
11412436 AATG-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACA-CGTTTTCTATTTTTACGG
729 AAGGAGT---TTTGGCC--C-C---AA---ACTTGG-TAGACGTGATC--CTTGTATTTTT---G
* ** ** ** ** * * **
11412499 TTTGGGATTTTTTA-AAATTTTTTCGAAAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTT
776 -TTGGCA---TGCACAAA--------AAA--A--TTCAG-CTAAAAACTCG-A-A-GTG-TACAA
* * * ** ** * **
11412563 GTATTTTTTTG-GCA--TGCACAAAATAAT-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
820 G-A-TTTTGTGACCATTTG-A-AAAA-AGTGTC--C--CCATTTC--A--G-AC-A-CTTTAATG
* * * * * ** * * * * *
11412624 ACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATTGCAACTGGCAGCAAACCTGT
869 GCTACTGGCAGCAA-----ACC-TGT-A-A-AATCTCA----AA-T----G-----CTCT
* *
11412684 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAAT
1 ----T-T--AA-G--------GGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
11412749 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTCGG--CCCCCGAT
49 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCTCGGCCCCCCCGAT
* * * * * * * * * *
11412812 CATCGGGACACCAATGTCGCCGATAAGGTTCTCCGGCGATGCTCC-AGTGATGGTGCCTCGATGA
113 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGATGA
** * * * * * * *
11412876 AGAAAAATATGGCACCAGCATATGCCCGAGCCCAGCTTGTACTGCTGTAACCCTCGGTCCGATCC
177 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCT
* * *
11412941 GATCTTAGACTGGGCAGGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
242 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
11413006 CCCACGAAACGAGCTTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGG
307 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGG
* * * * * * * *
11413071 TCAGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAATCCTCGGTCTGGTCCAATCTTAGAC
372 TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGAC
* *
11413136 TGGGAATGAACTCCGTATTCCTAAGCCAACCGACGAAACGA--GTG-GG-C--A------GGCAC
437 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGGACGGGCGGGCAC
*
11413189 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
502 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
11413254 CATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
567 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * *
11413319 AGCCTTCACGTGAAGTTTCACGGTAAGACGACTTGTTTTTTATTTTTCACAATTTTTGAAACTTT
632 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* ** * * ** * *
11413384 TTACGGTTCAGGATTTTTAAAAATTTTTTTGAAAGGGAAATTTGGACCCAAACTTGGTAGTCGTG
697 TTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
11413449 ATCCTTGTATTTTTTTTTGGCATGCGCAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTT
761 ATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
**
11413514 TGTGACCATTTGAAAAAAGTGTTACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
825 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
11413579 AAATCTCAAATGCTCT
890 AAATCTCAAATGCTCT
11413595 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
1 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * **
11413660 GCACCCATTGCACATCATGTGCGCATACCCCCCCTCCCGGCCCCGACGATCGTCGGAACCCCAAT
66 GCACCCATCGCACATCATGTGCGCACA-CCCCCCT--CGGCCCCCCCGATCGTCGGAACCCCAAT
* ** ** * **
11413725 GACGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCAGGGTGAAGAAAAATGCTCCACC
128 GCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACC
* * ** * *
11413790 AGCCCATGCTCGAGCATAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAA
193 AGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAA
* *
11413855 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACGAGCGT
258 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * * *
11413920 GTGGGGGCTCAGCTGGTCAGA-GAGCGGGATGCACAAGACGAGGATCGGCCGGGTCCCACTCTAC
323 GCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTAC
* * * **
11413984 GTGCTACCGATCCTGCTGCCGCAACCCAT-GGTTCACTCCGATCTTAGACTGGGAATGAACTCCG
388 GTGCTGCCGATCCTGCTGCCGCAACCC-TCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * *
11414048 TATGCCGAAGCCAACCGAC-AAA--A-CGAGCGGACGGGCAGGCGGGCACTACGTCGGCCAGAGA
452 TATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGGACGGGCGGGCACTACGCCGGCCAGAGA
*
11414109 GACGGGATGCGCAAGCCGTGGATCTATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
517 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
11414174 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT-G--------G------C---AAG
582 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
11414221 ----AT--------GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATT
647 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATT
* *
11414274 TTTT-AAATTTTTTCGCATA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT
712 TTTTAAAATTTTTTCG-AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
11414337 TTGGCATGCACAAAAAAATTCAGCTGAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAA
776 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
11414402 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
841 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
11414467 TTAACGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
1 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* **
11414532 GCACCCATTGCACATCATGTGCGCACACCCCCC-CGG-CCCCCCGATCACCGGAACCCCAATGCC
66 GCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * * *
11414595 G-CTGGTCAGATTCTCCTG-CGATGCTCCGACGATGGTTCACCGACGAAGAAAAATGTGGCACCA
131 GTC-GGTCAGGTTCTCC-GACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCA
* * * ** *
11414658 GGACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGTAAT
194 GCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
* * * * *
11414723 GAACTCCCTATGGTTAGACTGGAAATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGCGTG
259 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
** * * * * * * *
11414788 CAAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCAGGTCCCCCTCTACA
324 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTACG
* * * ** * *
11414853 TGCTGCCGATCATGCTACCACAACCCTTGGTCCGGTCTGATCTTAGACTTGGAATGAACTCCGTA
389 TGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
11414918 TGCCTAAGCCAACCGACGAAACGAGCG-G-GCATGCGAGCAGGCGGGCACTACACCGACCAGAGA
454 TGCCTAAGCCAACCGACGAAACGAGCGAGCGGACG-GA-CGGGCGGGCACTACGCCGGCCAGAGA
* * ** * **
11414981 GATGGGATGTGCAAGTTGTGGATTGATAGGGTGGTAGGTGGGTTTATTCACATCTTCATATTTCT
517 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
11415046 GCATGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
582 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * ** * *
11415111 TTTCATGGCAAGACCACTCGTTTTTTATTTTTCACAATTTTCAAAAC-TTTTGTGGTTCGGGATT
647 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATT
* *
11415175 TTTTAAAATTTTTTTC-AAA-AACGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTT
712 TTTTAAAA-TTTTTTCGAAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
**
11415238 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCATACAAGATTTTGTGACCATTTGAAA
775 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
11415303 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTC
840 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
11415368 T
905 T
* *
11415369 TT-ACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCA
1 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
11415433 GCACCCATTGCACATCATGTGCACACA-CCCCC-C-GCCCCCCACGATCGTCGGATCCCCAATGC
66 GCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCC-CGATCGTCGGAACCCCAATGC
* * * * *
11415495 CGTCGATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAA
130 CGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAG
* * * * * *
11415560 CACATGCCCGAGCCCAGCATGTGCGGCCGTAACCCTTGGTCTGGTCCGATCTTAGATTGGGAATG
195 CACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
* * * * *
11415625 AACTCCGTATGCTTAGACTGGGAATCAACTCTGTATGCCTAAGTCAACCTATGAAACGAGCGTAC
260 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * ** * *
11415690 GGGCGCTCAACCGGCCAGAGGGGC-AGGATGCGCAAGTCGAGGATTTGTCGGGTCCCCCTCTGCA
325 GGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTACG
* * * * * * *
11415754 TGTTGTCGATCCTGCTACCGCAACCCTCGGTTCGGTCCGATCTTAGATTGGGAATGAACTCTGTA
389 TGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
11415819 TGAACTCTGTATGCCTAA--G-CTAACCGA-CGAAAC-GAGCGGGCGGGCGGGCACTACGCCGGC
454 TG--C-C--TAAGCC-AACCGACGAAACGAGCG-AGCGGA-CGGACGGGCGGGCACTACGCCGGC
* * *
11415879 CAAAGAGACGGAATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
511 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * ** *
11415944 ATTTTTGCATGCCAATTTCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCAC
576 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * * *
11416009 GTGAAGTTCCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGTGGTTT
641 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT
* * *
11416074 AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GCCCCAAAATTGGTAGACGTGATCCTTGTAT
706 GGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
11416138 TTTTGTCGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
771 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
11416203 GAAAAAAGTATCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
836 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
11416268 GCTCT
901 GCTCT
11416273 TT-A---------AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
1 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * **
11416328 GCACCCATCTCACACCAAGTGCGCATA-CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGTT
66 GCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * * *
11416391 GCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-GTGCCCTGATGAAGAAAAATGTGGCACCAGC
131 GTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGC
* * * *
11416455 ACATGCCCGAGCCTAGCATGTGCTACTGCAACCCTCTGTCTGGTCTGATCTTAGACTGGGGATGA
196 ACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
* * * *
11416520 ACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGAACGTGCG
261 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * *
11416585 GGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-CTAGGTCCCCTTCTACAT
326 GGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGGTC-GGGTCCCCCTCTACGT
* * * * * * *
11416649 GTTGCTGATCCTACTACTGCAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTAT
390 GCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * ** * * * *
11416714 GCCTAAGCCAATCGACGAAACGAG-TAGGCGGGCGGGTGGGTGGGCACCACACCGACCAGAGAGA
455 GCCTAAGCCAACCGACGAAACGAGCGA-GCGGACGGACGGGCGGGCACTACGCCGGCCAGAGAGA
** * *
11416778 CGGGATGTACAAGCCGTGGATCGATAGGGTGGTAGGTGTGCTTAGGCACATCTTCATATTTCTAC
519 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* *
11416843 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTAACATGAAGTT
584 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * ** ***
11416908 TCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCAAGATTTT
649 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTT
* * **
11416973 TTAAAAATTTTTTCGGAAGGAGTTTTGGCGCCAAACTTTTTAGACGTGATCCTTGTATTTTTGTT
714 TT-AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * *
11417038 GGCATGCATAAAAAAATTCAACCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
778 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
11417103 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGCTCT
843 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
11417166 TTAAGGGGGTGTGAGTTCTCAAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
1 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
11417231 GCACCCATCACACATCATGT--GCACACACCCCGCGGCCCCCCCGATCGTCGAAACCCTAATGCC
66 GCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * *
11417294 G-CTGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAG
131 GTC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAG
* * * *
11417358 CACATGCTCGAGCCCAGCATGTTCTG-TGGCAACCCTCGGTCCT-GTCCGATCTTAGACTAGGAA
195 CACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAA
* * * * *
11417421 TGAACTCCATATGCTTATACTGGGAATGAACTCCGTATGCCTAAGTGAACCAACGAAATGAGCGT
258 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * *
11417486 GCGGGTGTTCAGCTGGCCAGAGGGGC-AGGACGCATAAGCC-AGGGATCGGTTGGGTCCCACTCT
323 GCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCACAAGCCGA-GGATCGGTCGGGTCCCCCTCT
* * * * ** * * * *
11417549 ACGTGTTGCTGATCTTGCTGCTGCAACCCTTGGTCCAGTTCAATCTTAGACTAGGAATGAACTCC
386 ACGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * * * *
11417614 GTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCGGGCACCACACCGGCC
451 GTATGCCTAAGCCAACCGACGAAACGA----GCGAGCGGACGGACGGGCGGGCACTACGCCGGCC
* * *
11417679 AGAGAGATGGGATGTGCAAGCCGTGGATCGATAGGGTCGTAGGTGGGTTTAGGCACATCTTCAT
512 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
11417743 TTGAAGTGTA
Statistics
Matches: 8414, Mismatches: 1571, Indels: 1192
0.75 0.14 0.11
Matches are distributed among these distances:
866 1 0.00
867 198 0.02
868 110 0.01
869 7 0.00
870 14 0.00
871 20 0.00
872 354 0.04
873 52 0.01
874 27 0.00
875 78 0.01
876 20 0.00
877 15 0.00
878 31 0.00
879 10 0.00
880 14 0.00
881 19 0.00
882 3 0.00
883 16 0.00
884 12 0.00
885 4 0.00
886 1 0.00
887 7 0.00
888 3 0.00
889 13 0.00
890 13 0.00
891 212 0.03
892 27 0.00
893 163 0.02
894 401 0.05
895 134 0.02
896 116 0.01
897 232 0.03
898 251 0.03
899 293 0.03
900 63 0.01
901 415 0.05
902 282 0.03
903 817 0.10
904 1172 0.14
905 389 0.05
906 669 0.08
907 42 0.00
908 109 0.01
909 10 0.00
910 30 0.00
911 32 0.00
912 21 0.00
913 14 0.00
914 21 0.00
915 3 0.00
916 65 0.01
917 15 0.00
918 20 0.00
919 18 0.00
920 40 0.00
921 21 0.00
922 25 0.00
923 76 0.01
924 67 0.01
925 120 0.01
926 86 0.01
927 76 0.01
928 156 0.02
929 9 0.00
930 22 0.00
931 19 0.00
932 3 0.00
933 1 0.00
934 12 0.00
935 1 0.00
936 4 0.00
937 6 0.00
938 5 0.00
939 5 0.00
941 4 0.00
943 1 0.00
944 9 0.00
945 8 0.00
946 6 0.00
947 5 0.00
948 1 0.00
949 1 0.00
950 10 0.00
951 3 0.00
953 2 0.00
955 3 0.00
957 1 0.00
958 7 0.00
959 1 0.00
960 5 0.00
961 1 0.00
962 1 0.00
963 7 0.00
965 5 0.00
966 5 0.00
968 4 0.00
969 10 0.00
970 7 0.00
972 3 0.00
973 3 0.00
974 6 0.00
975 1 0.00
976 4 0.00
977 5 0.00
979 7 0.00
980 3 0.00
981 5 0.00
982 3 0.00
984 4 0.00
985 7 0.00
986 8 0.00
987 11 0.00
988 5 0.00
989 3 0.00
990 19 0.00
991 28 0.00
992 16 0.00
993 25 0.00
994 27 0.00
995 20 0.00
996 21 0.00
997 37 0.00
998 40 0.00
999 23 0.00
1000 18 0.00
1001 22 0.00
1002 21 0.00
1003 8 0.00
1004 8 0.00
1005 10 0.00
1006 1 0.00
1007 3 0.00
1008 5 0.00
1010 2 0.00
1011 6 0.00
1012 2 0.00
1013 10 0.00
1014 3 0.00
1015 2 0.00
1016 1 0.00
1017 1 0.00
1018 6 0.00
1019 1 0.00
1020 2 0.00
1021 1 0.00
1022 2 0.00
1023 3 0.00
1024 111 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (905 bp):
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCC
GTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGC
ACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTG
CTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGCCAACCGACGAAACGAGCGAGCGGACGGACGGGCGGGCACTACGCCGGCCAGAGAGACG
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTT
AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
Found at i:11409252 original size:26 final size:26
Alignment explanation
Indices: 11409213--11409265 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11409203 CTAGTTTGAT
*
11409213 CTTAGACTGTGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11409239 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11409265 C
1 C
11409266 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11410167 original size:29 final size:26
Alignment explanation
Indices: 11410121--11410174 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 26
11410111 GATCCCAATC
11410121 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
11410147 TTAGACTCGGGAAGATGAACTCCGTATG
1 TTAGACT-GGG-A-ATGAACTCCGTATG
11410175 CTTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 7 0.28
27 3 0.12
28 1 0.04
29 14 0.56
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:11411350 original size:158 final size:159
Alignment explanation
Indices: 11411049--11411402 Score: 403
Period size: 158 Copynumber: 2.2 Consensus size: 159
11411039 ACTTCATATG
* * *
11411049 CTTAGACTAGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCATGCGGGCGTTCAGA
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGA
* ** ** *
11411114 CGACTGGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTAATCC
66 CCACCAGAGGAACGGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTAATCC
* * * *
11411179 TGCTGCCATAACCCTCAGT-TCGGTCCGA-T
131 TGATGCCACAACCCTCGGTCT-AGTCC-ATT
* * * * *
11411208 CTTATACTGGGAATGCACTCCGTATGCCTAAGTTAACCCACGAAACAAGCGTGC-GGCGCTCA-A
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGA
* * * *
11411271 CCAGCCAGAGGAACGGGATGCGCAAGTCAGGGATCGGTTGGGTCCCCCTCTGTGTGCTG-TCGAT
66 CCA-CCAGAGGAACGGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCT-AAT
* *
11411335 CCTGATGTCGCAACCCTCGGTCTAGTCCATT
129 CCTGATGCCACAACCCTCGGTCTAGTCCATT
* *
11411366 CTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAAC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
11411403 TGATGAAACG
Statistics
Matches: 161, Mismatches: 30, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
157 5 0.03
158 108 0.67
159 48 0.30
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (159 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGA
CCACCAGAGGAACGGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTAATCC
TGATGCCACAACCCTCGGTCTAGTCCATT
Found at i:11412973 original size:26 final size:26
Alignment explanation
Indices: 11412944--11412996 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11412934 CCGATCCGAT
*
11412944 CTTAGACTGGGCAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
* *
11412970 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
11412996 C
1 C
11412997 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:11413878 original size:26 final size:26
Alignment explanation
Indices: 11413842--11413894 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11413832 CTGGTCTGAT
11413842 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11413868 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11413894 C
1 C
11413895 CTAAGTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11414749 original size:26 final size:26
Alignment explanation
Indices: 11414710--11414760 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11414700 TGGTCCAATC
*
11414710 TTAGACTGGTAATGAACTCCCTATGG
1 TTAGACTGGAAATGAACTCCCTATGG
*
11414736 TTAGACTGGAAATGAACTCCGTATG
1 TTAGACTGGAAATGAACTCCCTATG
11414761 CTTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCCTATGG
Found at i:11415639 original size:26 final size:26
Alignment explanation
Indices: 11415610--11415662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11415600 CTGGTCCGAT
* *
11415610 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
11415636 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
11415662 C
1 C
11415663 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:11415823 original size:11 final size:11
Alignment explanation
Indices: 11415807--11415831 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11415797 TAGATTGGGA
11415807 ATGAACTCTGT
1 ATGAACTCTGT
11415818 ATGAACTCTGT
1 ATGAACTCTGT
11415829 ATG
1 ATG
11415832 CCTAAGCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (11 bp):
ATGAACTCTGT
Found at i:11416545 original size:26 final size:26
Alignment explanation
Indices: 11416504--11416556 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11416494 CTGGTCTGAT
* *
11416504 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
11416530 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11416556 C
1 C
11416557 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Done.