Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 69 of 190
Found at i:11417446 original size:26 final size:26
Alignment explanation
Indices: 11417408--11417460 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11417398 CCTGTCCGAT
11417408 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
11417434 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
11417460 C
1 C
11417461 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:11417650 original size:4 final size:4
Alignment explanation
Indices: 11417641--11417666 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
11417631 GACGAAACGA
11417641 GCGG GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GC
11417667 ACCACACCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:11419004 original size:26 final size:26
Alignment explanation
Indices: 11418968--11419020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11418958 CCTGTCCGAT
11418968 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11418994 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11419020 C
1 C
11419021 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11420546 original size:26 final size:26
Alignment explanation
Indices: 11420517--11420569 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11420507 CCGGTTCGAT
*
11420517 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11420543 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11420569 C
1 C
11420570 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11420738 original size:26 final size:26
Alignment explanation
Indices: 11420702--11420754 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11420692 CTGGTCTGAT
11420702 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
11420728 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
11420754 C
1 C
11420755 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:11420835 original size:185 final size:185
Alignment explanation
Indices: 11420497--11420837 Score: 524
Period size: 185 Copynumber: 1.8 Consensus size: 185
11420487 GTGCTACTGC
* *
11420497 AACCCTCGGTCCGGTTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
1 AACCCCCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
11420562 CCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGCCAGCCAGAGGGGCGGGATG
66 CCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGCCAGCCAGAGGGGCGGGATG
* *
11420627 CACAAGCTGAGGATCGGTCGGGTCCCTCCCTACGTGTTGTCGATCCTACTGCCGT
131 CACAAGCCGAGGATCGATCGGGTCCCTCCCTACGTGTTGTCGATCCTACTGCCGT
* *
11420682 AACCCCCGGTCTGG-TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAAC
1 AACCCCCGGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * *
11420746 TTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTG-TTCAGCCGGCCAGATGGGCGGGA
65 TCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTT-AGCCAGCCAGAGGGGCGGGA
* *
11420810 TGCATAAGCCGGGGATCGATCGGGTCCC
129 TGCACAAGCCGAGGATCGATCGGGTCCC
11420838 CCTCTATGTG
Statistics
Matches: 140, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
184 4 0.03
185 136 0.97
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (185 bp):
AACCCCCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGCCAGCCAGAGGGGCGGGATG
CACAAGCCGAGGATCGATCGGGTCCCTCCCTACGTGTTGTCGATCCTACTGCCGT
Found at i:11421028 original size:26 final size:26
Alignment explanation
Indices: 11420992--11421042 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11420982 CCGATCCGAT
* *
11420992 CTTAGGCTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
11421018 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
11421043 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:11421213 original size:26 final size:26
Alignment explanation
Indices: 11421177--11421229 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11421167 GCAGTCCAAA
11421177 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11421203 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11421229 C
1 C
11421230 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11421316 original size:475 final size:480
Alignment explanation
Indices: 11420448--11421609 Score: 1527
Period size: 475 Copynumber: 2.4 Consensus size: 480
11420438 TGCCCCGACA
* * * * * * * * *
11420448 AAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCCGGTT
1 AAGAAAAATACGGCACCAACACATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCAGTCCGATC
* *
11420513 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
66 CGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * *
11420578 ACCCACAAAACGAGCGTGCGGGCGCTTAGCC-AGCCAGAGGGGCGGGATGCACAAG-CTGAGGAT
131 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCAGGATGCACAAGCCAG-GGAT
* ** * * ** *
11420641 CGGTCGGGTCCCTCCCTACGTGTTGTCGATCCTACTGCCGTAACCCCCGGTCTGGTCTGATCTTA
194 CGATCGGGTCCCTCCCTACGTGTTACCGATCCTACTGCCGCAACCCCCGGTCTAGTCCAAACTTA
*
11420706 GACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
259 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
* * * * *
11420771 AATGAGCGTGCGGGTGTTCAGCCGGCCAGATGGGCGGGATGCATAAGCCGGGGATCGATCGGGTC
324 AACGAGCGTGCGGGTGTTCAGCCGGCCAGAAGGGCAGGATACACAAGCCGGGGATCGATCGGGTC
* * *
11420836 CCCCTCTATGTGCGCACACCCC-CTG-CCCCCCCGATCATCGGAACTCTAATGCCGCTGGTCAAG
389 CCCCTCTATGTACGCACACCCCTCTGACCCCCCCGATCATCGGAACCCCAATGCCGCTGGTCAAG
11420899 TTCTC-C-GA-CGATGGTG-GCCTAATG
454 TTCTCACGGACCGATGGTGTGCC-AATG
* *
11420923 AAGAAAAATACGGCACCAACACATGCCCGAGCCTAGCATGTGCTTCCGTAACCCTCAGTCCGATC
1 AAGAAAAATACGGCACCAACACATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCAGTCCGATC
* *
11420988 CGATCTTAGGCTGGGAATGAACTCTGTATCCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
66 CGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
*
11421053 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCTGGATGCACAAGCCAGGGATCG
131 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCAGGGATCG
* * * * *
11421118 ATTGGGTCCCTCTCTACGTGTTACCGATCTTACTGCTGCAACCCTCGGTGC-AGTCCAAACTTAG
196 ATCGGGTCCCTCCCTACGTGTTACCGATCCTACTGCCGCAACCCCCGGT-CTAGTCCAAACTTAG
11421182 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAA
260 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAA
* * * *
11421247 ACGAGCGTGCGGGTGTTCAGCCGGCCAGAAGGGTAGGATACGCAAGCCGGGGATCGGTTGGGTCC
325 ACGAGCGTGCGGGTGTTCAGCCGGCCAGAAGGGCAGGATACACAAGCCGGGGATCGATCGGGTCC
* * **
11421312 CCCTCTATGTACGCACACCCCTCTGACCCCCCCGATCGTCGGAACCCCAATGCTGCTGGTCTGGT
390 CCCTCTATGTACGCACACCCCTCTGACCCCCCCGATCATCGGAACCCCAATGCCGCTGGTCAAGT
* *
11421377 TCTCTGACGGAGCTCCGGCGATGGTGTTCCGATG
455 TCTC--ACGGA----C--CGATGGTGTGCCAATG
* *
11421411 AAGAAAAATATGGCACCAACCCATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCAGTCCGATC
1 AAGAAAAATACGGCACCAACACATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCAGTCCGATC
* * *
11421476 TGATCTTAGACTGGGAATGAACTCCGCATGCC-TAGACT-GGAATTGAACTCCGTATGACTAAGT
66 CGATCTTAGACTGGGAATGAACTCCGTAT-CCTTAGACTGGGAA-TGAACTCCGTATGCCTAAGT
* * * ** ** *
11421539 CAACCCATGAAATGAGCGTACGGGTGCTCAGTGGACCAGAGGGGCAGGATAAACAAGCCGGGGAT
129 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCAGGGAT
11421604 CGATCG
194 CGATCG
11421610 AGACCCCCTC
Statistics
Matches: 597, Mismatches: 71, Indels: 25
0.86 0.10 0.04
Matches are distributed among these distances:
475 359 0.60
476 7 0.01
477 37 0.06
480 1 0.00
481 2 0.00
487 4 0.01
488 183 0.31
489 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (480 bp):
AAGAAAAATACGGCACCAACACATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCAGTCCGATC
CGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCAGGGATCG
ATCGGGTCCCTCCCTACGTGTTACCGATCCTACTGCCGCAACCCCCGGTCTAGTCCAAACTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGTGTTCAGCCGGCCAGAAGGGCAGGATACACAAGCCGGGGATCGATCGGGTCCC
CCTCTATGTACGCACACCCCTCTGACCCCCCCGATCATCGGAACCCCAATGCCGCTGGTCAAGTT
CTCACGGACCGATGGTGTGCCAATG
Found at i:11422397 original size:26 final size:26
Alignment explanation
Indices: 11422368--11422420 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11422358 CCGATCCGAT
11422368 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11422394 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11422420 C
1 C
11422421 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11422894 original size:26 final size:26
Alignment explanation
Indices: 11422865--11422917 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11422855 CCGATCAGAT
*
11422865 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11422891 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11422917 C
1 C
11422918 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11425918 original size:872 final size:882
Alignment explanation
Indices: 11422451--11426777 Score: 4826
Period size: 872 Copynumber: 4.9 Consensus size: 882
11422441 AGCGTGCAGG
* * * * ***
11422451 TTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTGGACATGATCCTTGTATTTTTTTTGGTGCGCA
1 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
*
11422516 CAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
11422581 ATTCCAAATACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
11422646 GTAAGTTCTCAAGGTTTGATGAGGGATAGGGGG-CATATATAAGGGCCAAGTA--C-CA-CCA-C
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA-ATATAAGGGCCAAGTACCCGCACCCATC
* * * * * *
11422705 -C-CA-C-----CGCATACCCTCTCGGGCACCCCGATCGTCAGAA-CCCAATGCCGTCGGTCAGG
260 GCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * * * ** * *
11422761 TTCTCCGGTGATGCTC-CGCTGATAGTGCCCCGGTGAAGAAAAATTCGACACCAAG-ACATGTCT
324 TTCTTC-GCGATGCTCTGGC-GATGGTGCCCCGACGAAGAAAAATGCGACA-CAAGCACATGCCT
** * * * * **
11422824 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCAGATCTTATACTGGGAATGAACTCC-GT
386 GAGCCCAGCA--TG-TGCCG---GTC-CAG-CCAAT-AGA-C--GT-C--AGTCTGAACTCCAGT
* *
11422888 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTC
436 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
* * *
11422953 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTATGTGCTACCAA
501 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTATGTGCTACCGA
* ** * *
11423018 TCCTGCTGCCACAACCCTCGATC-CAGTTCGGTCTTAGACTAGGAATGAACTCCATATGCCTAAG
566 TCCTGCTGCCACAACCCTCGATCTGACCT-GATCTTAGACT-GGAATGAACTCCGTATGCCTAAG
* * * **
11423082 CCAACCGACGAAACGAA---CAGGCGGGCGGGCACTACGTCGGCCAGAGAGATGAGATGCGTGAG
629 CCAACCGACGAAACGAACGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
11423144 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
694 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* * * * * *
11423209 TTTTATAGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTAATAGCAAGATG
759 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
11423274 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-
824 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * ** *
11423332 TTTTTCGAAAGGATTTTTGGCCACAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCG
1 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
* *
11423397 CAAAAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
11423462 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
11423527 GTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCATCG
* * * * *
11423592 CACTTCATGTGCGCACACCCCCCTGACCCCCCGATCGTCGGAACCCCAATGCTGCCAGTCAGGTT
261 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * *
11423657 CTT--CGA--------CGA---TGCTCCGACGAAGAAAAATGCGACACCACCACATGCCTGAGCC
326 CTTCGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGACACAAGCACATGCCTGAGCC
* * ** * *
11423709 CAGCATGTTCTGCCACAACCATCGATCCAGTCCGATCTTAGAC-TGGGTATGAACT-CTGTATGC
391 CAGCATG---TG-------C--CGGTCCAG-CC-A--ATAGACGTCAGTCTGAACTCCAGTATGC
* * * * *
11423772 TTAGGCTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGTC
440 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * * * *** *
11423837 GGCCAAAAGGGTGGGATGCGCAAGCCGAGGATCGATCGAGTCCCTCTCTGCATGCTATCGATCCT
505 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTATGTGCTACCGATCCT
* *
11423902 GCTGCCACAACCTTC-AGTCTGGTCC-GATCTTAGACTTGGAATGAA---C---T--C----CC-
570 GCTGCCACAACCCTCGA-TCT-GACCTGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCA
* * *
11423952 ACCGATGAAACG-A--GCGGGTGGGCGGG--C-A--T--G-C---G-GATGGGATGCGCAAGCCG
632 ACCGACGAAACGAACGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
11424002 TAGATCGATAGGATGGTAGGTGGCTTTAGGCACATCTTCATATTTCTGCATGGCAATGCCATTTT
697 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* * *
11424067 TATGGCTTGTAAATTCACACAATGGTTCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACT
762 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* **
11424132 CGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
827 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
*
11424188 TTTTTCGAAACGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
* *
11424253 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAATGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
11424318 ATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAACATCTCAAATGCTATTTAACGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
11424382 GTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCCGCACCCATCG
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCATCG
11424447 CACATCATGTGCGCACACCCCCCGGCCCCCCCGAATCGTCGGAACCCCAATGCCGCCGGTCAGGT
261 CACATCATGTGCGCACACCCCCCGGCCCCCCCG-ATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * ** *
11424512 TTTTCGACGATGATCTGACGGTGGTGCCCCGGTGAAGAACAATGCGACACCAA-CACATG-CTCG
325 TCTTCG-CGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGACA-CAAGCACATGCCT-G
** **
11424575 AGCCCAGCATGTGCTGTCACAACCCTCGGTCCAGTCCAATCTTAGA-GTGGGAATGAACTCC-GT
387 AGCCCAGCA--TG-TG--------C-CGGTCCAG-CCAA---TAGACGTCAGTCTGAACTCCAGT
* * * * *
11424638 ATGCTTAAACTAGGAATTAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTC
436 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * * * *
11424703 AGTCGGCCAGAAGGACGGGATGTGCAAGTCGGGGATTGGCCGGGTCCCCCTCTGCATGTTGCT--
501 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT--ATG-TGCTAC
* *
11424766 -GATCCTGCTGCCACAACCATC-AGTCTAGTCC-GATCTTAGACTGGGAATGAACTCCGTATGCC
563 CGATCCTGCTGCCACAACCCTCGA-TCT-GACCTGATCTTAGACT-GGAATGAACTCCGTATGCC
* * * *
11424828 TAAGCCAATCGAAGAAACG-AC--TGGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCG
625 TAAGCCAACCGACGAAACGAACGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
*
11424890 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATTCCAATG
690 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* *
11424955 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTACGCCTTCATGTGAAGTTTCATGGCAA
755 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
11425020 GACAACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAACT
820 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-T
* * *
11425084 TTTTTCG-AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTTGGCATGCA
1 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
*
11425148 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
11425213 ATTTCAGACACTTTAATCGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * ** * * *
11425278 GTGAGTTCTCAAGGATTGATGAGGGATAGGGGGCCAATATCAGGAACAAGAACCCTCACGCATCG
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCATCG
* * *
11425343 TACATCATGTGGGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTT
261 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
*
11425408 CTTCAGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACAAGCACATGACC-GAG
326 CTTC-GCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGACACAAGCACATG-CCTGAG
11425472 CCCAGCATGTG-CGG-CC-G-CAAT-G-C-TCAGTCTG-A-TCC-G-AT-CTTAGACTGGGAATG
389 CCCAGCATGTGCCGGTCCAGCCAATAGACGTCAGTCTGAACTCCAGTATGCTTAGACTGGGAATG
* * *
11425525 AACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGG
454 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
* * **
11425590 GATGCGCAAGCCGGGGATCGGTCAGGTCCCACTCTATGTGCTACCGATCCTGCTGCTGCAACCCT
519 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTATGTGCTACCGATCCTGCTGCCACAACCCT
* * * *
11425655 CGATCTGACCTGATTTTAGACTGGGATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAACGG
584 CGATCTGACCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC-G
* * * *
11425720 GCGGGCGGGCGGGCATTACATCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATTGATAGGGTGG
648 GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
11425785 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCCTGTAAATTC
713 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
11425850 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
778 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* *
11425915 CGATTTTGGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
843 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
*
11425955 TTTTTC-AGAAGGCGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
1 TTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
* *
11426019 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATATGAGAAAAGTGTCCC
65 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
11426084 CATATCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCCCTTTAAGGGGG
130 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
** *
11426149 TGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCATC
195 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCATC
* * ** * * **
11426214 GCATATCATTTGCGCACACCCCCTAG-CCCCCCGATCGTCGGAACCCAAATGCTGTGGGTCAGGT
260 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * * *
11426278 TCTCCGGTGACGCTCTGGCGATCGTGCCCCTG-CAAAGAAAAATGCGACACCAGCACATGCCTGA
325 TCTTC-GCGATGCTCTGGCGATGGTGCCCC-GACGAAGAAAAATGCGACACAAGCACATGCCTGA
* * * *
11426342 GCCCAGCCTGTGCTACCATAACCCACGGTCCGGTCCAAACTTAGACGGTGAATC--AACTCCA-T
388 GCCCAGCATGTG-----------C-CGGTCCAG-CC-AA--TAGAC-GTCAGTCTGAACTCCAGT
* * * * *
11426404 ATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAACGTGCAGGCGCTC
436 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * * **
11426469 AGCTGGCCAGAGGGGCAGAATACGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGA
501 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTATGTGCTACCGA
* * * ** *
11426534 TCCTGCTACCGCAACCCTCAGTTC-GGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAG
566 TCCTGCTGCCACAACCCTC-GATCTGACCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAG
* * * *
11426598 CCAACCGACGAAACGAGTGGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGATACGGGATGT
629 CCAACCGACGAAACGA----AC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
** * * *
11426663 GCAAGCCACGAATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
689 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
*
11426728 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACG
754 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
11426778 GTTCATGATT
Statistics
Matches: 2965, Mismatches: 334, Indels: 273
0.83 0.09 0.08
Matches are distributed among these distances:
855 308 0.10
856 177 0.06
859 4 0.00
860 1 0.00
862 1 0.00
864 1 0.00
865 1 0.00
866 5 0.00
867 26 0.01
868 38 0.01
869 135 0.05
870 220 0.07
871 113 0.04
872 473 0.16
873 9 0.00
874 2 0.00
875 1 0.00
876 1 0.00
877 1 0.00
878 6 0.00
879 4 0.00
880 201 0.07
881 227 0.08
882 7 0.00
883 24 0.01
884 6 0.00
885 11 0.00
886 5 0.00
887 5 0.00
888 4 0.00
889 5 0.00
890 1 0.00
891 4 0.00
892 3 0.00
893 21 0.01
894 33 0.01
895 416 0.14
896 135 0.05
897 143 0.05
898 40 0.01
902 147 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (882 bp):
TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCATCG
CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
CTTCGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGACACAAGCACATGCCTGAGCC
CAGCATGTGCCGGTCCAGCCAATAGACGTCAGTCTGAACTCCAGTATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTATGTGCTACCGATCCTGCTGCCACAACCCTCG
ATCTGACCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGCG
GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
Found at i:11427254 original size:26 final size:26
Alignment explanation
Indices: 11427225--11427277 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11427215 CCAGTCTGAT
11427225 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11427251 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11427277 C
1 C
11427278 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11427571 original size:844 final size:842
Alignment explanation
Indices: 11425942--11429416 Score: 2531
Period size: 844 Copynumber: 4.0 Consensus size: 842
11425932 TGCGGTTCGG
*
11425942 GATTTTTTAAAATTTTTTCAGAAGGCGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
*
11426007 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATATGA
66 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATATGA
*
11426072 GAAAAGTGTCCCCATATCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGC
131 AAAAAGTGTCCCCATATCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGC
* *
11426137 CCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTA
196 CCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * ** * *
11426202 CCCGCACCCATCGCATATCATTTGCGCACACCCCCTAGCCCCCCGATCGTCGGAACCCAAATGCT
261 CCAGCACCCATCACATATCAGGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCCAAATGCC
* *
11426267 GTGGGTCAGGTTCTCCGGTGACGCTCTGGCGATCGTGCCCCTGCAAAGAAAAATGCGACACCAGC
326 GTCGGTCAGGTTCTCCGGTGACGCTCCGGCGATCGTGCCCCTGCAAAGAAAAATGCGACACCAGC
* * * * *
11426332 ACATGCCTGAGCCCAGCCTGTGCTACCATAACCCACGGTCCGGTCCAAACTTAGACGGTGAATCA
391 ACATGCCCGAGCACAGCATGTGCTACCACAACCCACGGTCCAGTCCAAACTTAGACGGTGAATCA
* * *
11426397 ACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAACGTGCA
456 ACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACA
* *
11426462 GGCGCTCAGCTGGCCAGAGGGGCAGAATACGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTG
521 GGCGCTCAACCGGCCAGAGGGGCAGAATACGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTG
* * *
11426527 CTACCGATCCTGCTACCGCAACCCTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCTGTATG
586 CTACCAATCCTGCTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
* ** * *
11426592 CCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGATACG
651 CCTAAGCCAACCGACGAAAAGAACGGGCGGGCGGGCAGGCGGGCACTACGTCAGCCAGAGAGACG
* * *
11426657 GGATGTGCAAGCCACGAATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGT
716 GGATGCGCAAGCCACGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
11426722 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACGGTTCAT
781 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACGGTTCAT
* * * *
11426784 GATTTTTTAAAATTTTTTC-GAAAGGATTTTTTGCCCCAAACTTGGTAGCCGTGATCCTTGTATT
1 GATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
* * *
11426848 TTTGTTGGTATGCACGAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
65 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATATG
* *
11426913 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATATCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATG
* * *
11426978 CTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATCGGGGGCCAATATAAGGGCCAAGT
195 CCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
11427043 ACTAGCACCCATCAC-TCATCAGGTGCGCACACCCCGCCGGCCCACCCGATCGTCGGAACCCCAA
260 ACCAGCACCCATCACAT-ATCAGGTGCGCACACCCC-CCAGCCC-CCCGATCGTCGGAACCCAAA
* * * *
11427107 TGCCGTCGGTCAGGTTCTCTGGTGATGCTCCGGCGATGGTGCCCC-GACGAAA-AAAAATGCGGC
322 TGCCGTCGGTCAGGTTCTCCGGTGACGCTCCGGCGATCGTGCCCCTG-C-AAAGAAAAATGCGAC
* * * ** ** *
11427170 ACCAGCACATGCCCGAGCACAGCATGTGCTATCGCGACCCTTGGTCCAGTCTGATCTTAGACTGG
385 ACCAGCACATGCCCGAGCACAGCATGTGCTACCACAACCCACGGTCCAGTCCAAACTTAGAC-GG
* *
11427235 -GAATGAACTCCATATGCTTAGACTGGGAATGATCTCCGTATGCCTAAGTCAACCCACGAAACGA
449 TGAATCAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
11427299 GCGTACGGGTC-CTCAACCGGCCAGAGGGGCGGGATGA-GCAAGCCGGGGATCGG-CTGGGTCCC
514 ACGTACAGG-CGCTCAACCGGCCAGAGGGGCAGAAT-ACGCAAGCCAGGGATCGGTC-GGGTCCC
* ** * *** * *
11427361 CTTCTGCGTGCTGTCAATCCTTCTGTTGCAACCCTCAG-TCTGGTCCGATGTTAGACTGGGAATG
576 CCTCTGCGTGCTACCAATCCTGCTACCGCAACCCTCAGTTC-GGTCCGATCTTAGACTAGGAATG
* * *
11427425 AACTCCGTATGCCTAAGCCAACCGACGAAAATAACGGGTGGGCGGGCGGGCGGGCACTACGTCAG
640 AACTCCGTATGCCTAAGCCAACCGACGAAAAGAACGGGCGGGCGGGCAGGCGGGCACTACGTCAG
** *
11427490 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
705 CCAGAGAGACGGGATGCGCAAGCCACGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
11427555 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
770 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCA
11427620 CGTGAAGTTTCAT
835 C--G--G-TTCAT
* ** * * * * *
11427633 GGCGGGACGACTCGTTTT-CTA-TTTTTC---ACGA-TTTTTG----AAACTT-TTTG-C--GGT
1 --------GA-T-TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
* * **** * ** ** *** * * *
11427684 --TTGGGATTTTTTAAAATTTTTTTG-A-AAAGAGTTTTGGCCCTAAACTTGGTAGATGTGATCC
56 CCTT-GTA-TTTTT---GTTGGCATGCACAAAAAAATTCAGCTAAAAAC-T--CA-AAGTG-TAC
** * * * *** * **
11427745 TTGTATTTTTATTGGCTTGCACAAAAAAATTCAGCTAAAAACTCAAACTGTACAAGATTGTGTGA
111 AAG-A---TT-TT-G--TG-AC-----CA-T-A--T-GAAA---AAAGTGT-CCCCA-TATCAGA
* * * ** * *
11427810 C-CATTTGAAAAAGTGCCCCCATTTCGGACA-CTTTAATGGCTACTGGCAGCAAACCTATAAAAT
152 CAC-TTT----AA-TG--GCTA-CT-GG-CAGC---AA-ACCTA-T---A--AAA--TCTCAAAT
* * * * ** * * * ** *
11427873 -CTCAAAAGCTCTTTAAGGGG-GTGTGAGT-TCTCGAGGTT--TGATGAGG-GATAGATGGCAAT
194 GC-C-----CT-TTAAGGGGGTGTGAG-TTCTCGAG-GTTTGATGA-G-GGATA-GGGGGCCAAT
* * * * * ** *
11427932 ATAAGGGTCAAGTACCTGCACCCATCGCACATCATGTGCATACACCCACCCGGCCCCCCGAT-GT
247 ATAAGGGCCAAGTACCAGCACCCATCACATATCAGGTGCGCACACCC-CCCAGCCCCCCGATCGT
* * * **** * *
11427996 CAGAACCCCAATGCCGTCGATCAGGTTCTCCAACAATGCTCCGGCGATGGTGCCCC-G-ATGAAG
311 CGGAACCCAAATGCCGTCGGTCAGGTTCTCCGGTGACGCTCCGGCGATCGTGCCCCTGCA--AAG
* * * * * ** **
11428059 AAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCC-CAACCCTCGGTCTGGTCTGA
374 AAAAATGCGACACCAGCACATGCCCGAGCACAGCATGTGCTACCACAACCCACGGTCCAGTCCAA
* * * * *
11428123 TCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACT
439 ACTTAGACGGTGAATCAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * * * * * * *
11428188 CATGAAACGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGATC
504 CACGAAACGAACGTACAGGCGCTCAACCGGCCAGAGGGGCAGAATACGCAAGCCAGGGATCGGTC
* ***** * * * *
11428253 GGGTCCCCCTCTACGTGCTGTTGGTCCTGCTGCAGCAACCCT-TGGTCTGGTCCGATCTTAGACT
569 GGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCGCAACCCTCAGTTC-GGTCCGATCTTAGACT
* *
11428317 GGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACA-AACGGGCGGGC--G--GGCGGGCAC
633 AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-AGAACGGGCGGGCGGGCAGGCGGGCAC
* * * * * **
11428377 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTTGGTG
697 TACGTCAGCCAGAGAGACGGGATGCGCAAGCCACGAATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
11428442 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
762 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
11428507 CGCCTTCACGTGAAGTTTCAT
827 AGCCTCCAC--G--G-TTCAT
*
11428528 GGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATGTTTTAA
1 -----G---A---------T-TTTTT----A------AAA--TTTT----TTC-AGA------AG
* * **** ** * *
11428593 AATTTTTTCGGAAAGAATTTTGGCCACAAACTTCGTAGTCATGATCCTTGTATTTTTGTTGGCAT
25 GA-GTTTT-GGCCCCAAACTTGG----TAG------A--CATGATCCTTGTATTTTTGTTGGCAT
* * * *
11428658 GCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTGTGTGACCATTTGAAAAAAGTGTC
76 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATATGAAAAAAGTGTC
* * * *
11428723 CCCATTTCAGACACTTTGATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
141 CCCATATCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCCCTTTAAGGG
11428788 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCA-CACCC
206 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCC
* * * * * *
11428852 ATCGCACATCATGTGCGCACACCCCCCTGCCCCCCGAT-GTCGGAACCCCAATGCCGCCGGTCAG
270 ATCACATATCAGGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCCAAATGCCGTCGGTCAG
* * * * * * *
11428916 GTTCTCCAGCGATGCTCAGGTGATGGTG-CCCTG-ATGAAGAAAAATGCGGCACCAGCACATGCC
335 GTTCTCCGGTGACGCTCCGGCGATCGTGCCCCTGCA--AAGAAAAATGCGACACCAGCACATGCC
* * ** ** * * * *
11428979 CAAGC-CTAGCATGTGCTGCC-CAACCCTTGGTCTGGTCCGATCTTAGGCTGG-GAATGAACTCC
398 CGAGCAC-AGCATGTGCTACCACAACCCACGGTCCAGTCCAAACTTAGAC-GGTGAATCAACTCC
* * * *
11429041 ATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
461 ATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACAGGCGC
* * * * * ** * ** *
11429106 TCAGCTGGCCAGAGCGGCAGGATGCATAAGCC-GCTGATC-AACTAGGTCCCCCTCTGCGTGCTA
526 TCAACCGGCCAGAGGGGCAGAATACGCAAGCCAG-GGATCGGTC-GGGTCCCCCTCTGCGTGCTA
* * * * * *
11429169 CCGATCCTGCTACCGCAACCCCCGGTTTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCT
589 CCAATCCTGCTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCT
* * * * * * * *
11429234 AAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGATACGGGG
654 AAGCCAACCGACGAAAAGAACGGGCGGGCGGGCAGGCGGGCACTACGTCAGCCAGAGAGACGGGA
* * * *
11429299 TGTGCAAGCCACGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
719 TGCGCAAGCCACGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCC
*
11429364 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
784 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACG
11429417 TGAAGTTTCA
Statistics
Matches: 2121, Mismatches: 320, Indels: 328
0.77 0.12 0.12
Matches are distributed among these distances:
841 2 0.00
842 268 0.13
843 11 0.01
844 457 0.22
845 14 0.01
846 12 0.01
847 3 0.00
848 8 0.00
849 12 0.01
850 4 0.00
851 3 0.00
852 1 0.00
853 6 0.00
854 3 0.00
855 2 0.00
856 2 0.00
857 9 0.00
858 2 0.00
859 6 0.00
860 2 0.00
865 1 0.00
866 1 0.00
869 1 0.00
870 3 0.00
873 6 0.00
874 3 0.00
875 8 0.00
879 2 0.00
880 2 0.00
882 2 0.00
883 1 0.00
884 3 0.00
885 2 0.00
887 2 0.00
888 2 0.00
889 1 0.00
892 5 0.00
894 3 0.00
895 162 0.08
896 339 0.16
897 64 0.03
898 18 0.01
899 231 0.11
900 233 0.11
901 16 0.01
902 63 0.03
903 13 0.01
904 1 0.00
905 3 0.00
907 1 0.00
910 1 0.00
911 2 0.00
912 2 0.00
914 3 0.00
915 3 0.00
916 1 0.00
917 5 0.00
919 2 0.00
920 1 0.00
921 3 0.00
924 8 0.00
925 3 0.00
926 6 0.00
929 3 0.00
930 1 0.00
931 2 0.00
933 5 0.00
934 2 0.00
938 4 0.00
939 2 0.00
940 2 0.00
942 1 0.00
943 1 0.00
944 2 0.00
947 1 0.00
948 3 0.00
949 3 0.00
951 4 0.00
952 3 0.00
953 12 0.01
954 7 0.00
955 2 0.00
956 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (842 bp):
GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATATGA
AAAAAGTGTCCCCATATCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGC
CCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCACATATCAGGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCCAAATGCC
GTCGGTCAGGTTCTCCGGTGACGCTCCGGCGATCGTGCCCCTGCAAAGAAAAATGCGACACCAGC
ACATGCCCGAGCACAGCATGTGCTACCACAACCCACGGTCCAGTCCAAACTTAGACGGTGAATCA
ACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACA
GGCGCTCAACCGGCCAGAGGGGCAGAATACGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTG
CTACCAATCCTGCTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
CCTAAGCCAACCGACGAAAAGAACGGGCGGGCGGGCAGGCGGGCACTACGTCAGCCAGAGAGACG
GGATGCGCAAGCCACGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACGGTTCAT
Found at i:11428163 original size:26 final size:26
Alignment explanation
Indices: 11428124--11428176 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11428114 CTGGTCTGAT
11428124 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
11428150 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
11428176 C
1 C
11428177 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:11429056 original size:26 final size:26
Alignment explanation
Indices: 11429020--11429072 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11429010 CTGGTCCGAT
*
11429020 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11429046 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11429072 C
1 C
11429073 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11429101 original size:896 final size:897
Alignment explanation
Indices: 11426775--11434420 Score: 10194
Period size: 894 Copynumber: 8.5 Consensus size: 897
11426765 TTAAGCCTCC
* * * *
11426775 ACGGTTC-ATGATTTTTTAAAATTTTTTCGAAAGGATTTTTTGCCCCAAACTTGGTAGCCGTGAT
1 ACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
11426839 CCTTGTATTTTTGTTGGTATGCACGAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
65 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
11426904 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
130 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
11426969 TCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATCGGGGGCCAATATAA
195 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
11427034 GGGCCAAGTACTAGCACCCATCACTCATCAGGTGCGCACACCCCGCCGGCCCACCCGATCGTCGG
260 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCC-CCCGATCGTCGG
* * * * *
11427099 AACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTCCGGCGATGGTGCCCCGACGAAAAAAAA
323 AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAA
* ** * * * *
11427164 TGCGGCACCAGCACATGCCCGAGCACAGCATGTGCTATCGCGACCCTTGGTC-CAGTCTGATCTT
388 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGA-TCCGATCTT
*
11427228 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGATCTCCGTATGCCTAAGTCAACCCACG
452 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
11427293 AAACGAGCGTACGGGTC-CTCAACCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCG-GCTGG
517 AAACGAGCGTGCGGG-CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATC-GG
* * * * * ** * *
11427356 GTCCCCTTCTGCGTGCTGTCAATCCTTCTGTTGCAACCCTCAGTCTGGTCCGATGTTAGACTGGG
580 GTCCCCCTCTGCATGCTGCCGATCCTGCTGCAGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
11427421 AATGAACTCCGTATGCCTAAGCCAACCGACGAAAATAACGGGTGGGCGGGCGGGCGGGCACTACG
645 AATGAACTCCGTATGCCTAAGCCAACCGACGAAAA-AAC----GGGCGGGCGGGCGGGCACTACG
* *
11427486 TCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
705 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
11427551 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
770 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
**
11427616 TTCACGTGAAGTTTCATGGCGGGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
835 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * * * * *
11427679 GCGGTTTGGGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCTAAACTTGGTAGATGTGATC
1 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
11427744 CTTGTATTTTTATTGGCTTGCACAAAAAAATTCAGCTAAAAACTCAAACTGTACAAGATTGTGTG
66 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
* * *
11427809 ACCATTTG-AAAAAGTGCCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTATAAAAT
131 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* **
11427873 CTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGATGG-CAATATAAG
196 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * ** *
11427937 GGTCAAGTACCTGCACCCATCGCACATCATGTGCATACACCCACCCGGCCCCCCGAT-GTCAGAA
261 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCGATCGTCGGAA
* * ** *
11428001 CCCCAATGCCGTCGATCAGGTTCTCCAACAATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATG
325 CCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATG
* * *
11428066 CGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCC-CAACCCTCGGTCTGGTCTGATCTTAGA
390 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGA
* * *
11428130 CTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAA
455 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* *
11428195 CGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGATCGGGTCCC
520 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCC
* * ** * *
11428260 CCTCTACGTGCTGTTGGTCCTGCTGCAGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGA
585 CCTCTGCATGCTGCCGATCCTGCTGCAGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
*
11428325 ACTCTGTATGCCTAAGCCAACCGACGAAACAAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGA
650 ACTCCGTATGCCTAAGCCAACCGACGAAA-AAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGA
* * **
11428390 GAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTTGGTGCATCTTCATATTT
714 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
11428455 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTACGCCTTCACGTGA
779 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
*
11428520 AGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
844 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * * * *
11428574 ACGGTTCGAGATGTTTTAAAATTTTTTCGGAAAGAATTTTGGCCACAAACTTCGTAGTCATGATC
1 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
11428639 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTGTGTG
66 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
*
11428704 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATGGCTACTGGCAGCAAACCTGTAAAAT
131 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
11428769 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
196 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
11428834 GGCCAAGTACCCA-CACCCATCGCACATCATGTGCGCACACCCCCCTGCCCCCCGAT-GTCGGAA
261 GGCCAAGTA-CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAA
* * * *
11428897 CCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCAGGTGATGGTGCCCTGATGAAGAAAAATG
325 CCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATG
* * * * *
11428962 CGGCACCAGCACATGCCCAAGCCTAGCATGTGCTGCC-CAACCCTTGGTCTGGTCCGATCTTAGG
390 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGA
*
11429026 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
455 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * ** * ** * *
11429091 CGAGCGTGCGGGCGCTCAGCTGGCCAGAGCGGCAGGATGCATAAGCCGCTGATC-AACTAGGTCC
520 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATC-GGGTCC
* * * * * * *
11429155 CCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCCCGGTTTGGTCCGATCTTAGATTGGGAATG
584 CCCTCTGCATGCTGCCGATCCTGCTGCAGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
* *
11429220 AACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGG
649 AACTCCGTATGCCTAAGCCAACCGACGAAA-AAACGGGCGGGCGGGC--G--GGCACTACGCCGG
* * * ** *
11429285 CCAGAGATACGGGGTGTGCAAGCCACGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCA
709 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
11429350 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
774 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* **
11429415 CGTGAAGTTTCATGGCAAGACGACTTC-TTTTCTATTTTTCACTATTTTCAAAACTTTTT
839 CGTGAAGTTTCATGGCAAGACGAC-TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * *
11429474 ATGATTCGGGATTTTTTAAAATTTTTTCGTAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATC
1 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* **
11429539 CTTGTATTTTTGTTGGCA-GCCACAAAAATATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGT
66 CTTGTATTTTTGTTGGCATG-CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
*
11429603 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAA
130 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* ** *
11429668 TCTCAAACGCTCTTTAAGAAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
195 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
11429733 GGGCCAAGTACCATCACCCATCGCACATCATGTGCCCACACCACCCCCGGCCCCCCCGATCGTCG
260 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCGG-CCCCCCGATCGTCG
* * * *
11429798 GAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATTGCGCCCC-AGTGAAGAAA
322 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-TGAAGAAA
* * * *
11429862 AATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCCGCCGTAA-CC-C--T-TGAT-C---C-
386 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCT
* *
11429917 -AG--T----CTG-A-T-C--A----TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC
451 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
** * * *
11429966 GAAACGAGCGTGCGGGCGCTCAGCCAACCAGAGGGGTGGGATGCGCAAG-CTGAGGATCGGTCGG
516 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGATCGG
* * * * * *
11430030 GTCCGCCACTGCGTGCTGCCGATCCTGCTGTC-GCAACCCTCAGTC-GTGTCTGATCTTAGGCTG
580 GTCCCCCTCTGCATGCTGCCGATCCTGCTG-CAGCAACCCTCGGTCTG-GTCCGATCTTAGACTG
* * **
11430093 GGAATGAACTCTGTATGCCTAAGCCAATCGACGAAACGA-GTTGGCGGGCAGGCGCGCGGGCACT
643 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAAACG--GGCGGGC--G-G-GCGGGCACT
*
11430157 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCAC
702 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
11430222 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
767 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
11430287 GCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
832 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
11430352 T
897 T
* * * *
11430353 ACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGACCC-AATTATGGTAGCCGTGAT
1 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGAT
* * * *
11430417 CCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCCAAGTTTACAATATTTTGT
65 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
* * * *
11430482 GGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTAGCAGCAAACCTATAAAA
130 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
11430547 TCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGA-GGATA-GGGGCCAATGTAA
195 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
11430610 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCATACACCACCCACCCTCGGCCCCCCCGATC
260 GGGCCAAGTACCAGCACCCATCGCACATCATGTGC--GCA-CA-CC-CCC-CGG-CCCCCCGATC
* ** **
11430675 G-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCCGACAAA
318 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG-CCCCGA-TGA
* * * *
11430739 AGAAAAATGTGGCACCAGGAACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATT
381 AGAAAAATGCGGCACCA-GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATC
* * *
11430804 TGATCTTAGACTGGGAATGAACTTCATATGGCTTAGACTGGGAATGGAACTCCTTAAT-CCTAAG
445 CGATCTTAGACTGGGAATGAACTCCATAT-GCTTAGACTGGGAAT-GAACTCCGT-ATGCCTAAG
* * * * * *
11430868 TCAACCCACG-AACGAGCGTACGGGCGCTCAGTCGTCCAGAGGGGCGAGATGTGCAACTCGGGGA
507 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGA
* * * * * *
11430932 TCGATCGGGTCCCCCTCTGCAAGCTGTCGATCCTGCTACCA-CAACCCTTGGTCCGGTCTGATCT
572 TCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCT-GCAGCAACCCTCGGTCTGGTCCGATCT
* * * *
11430996 TAGACTGGGAATGAACTCCGTATGCCTAAGCAAACCGATGAAACAAGCGGGCGGGCAGGCAGGCA
636 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-AAACGGGCGGGC--G--GGCG
*
11431061 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGAGGGTTT
696 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
11431126 TGGGACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTC
761 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
11431191 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
826 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
11431256 ACTTTTT
891 ACTTTTT
* * *
11431263 -CGATTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAGGTGATC
1 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
11431327 CTTGTATTTTTGTTGGCATG-ACCAAAAAACTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
66 CTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
* * *
11431391 GACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAGCCTGTAAAA
130 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
11431456 TCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
195 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
11431521 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCACCTCGATCG-CTGA
260 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGTC-GG
* ** **
11431585 AACACCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCCACGATGGTGCCCC-------AAAAA
323 AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAA
*
11431643 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTA
388 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTA
* * * *
11431708 GACTGGGGAATGAACTTCGTATGCTTAAACTGGGAATGAACTCCTTAAT-CCTAAGTCAACCCAC
453 GACT-GGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT-ATGCCTAAGTCAACCCAC
* * * * * * * * *
11431772 GAAACGAGCGTGCGGGCGCTCAGTCGTCCAGAGGGGTGAGATGTGCAACTCAGGGATCGACCGAG
516 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGG
* * * * * * *
11431837 TCGCCCTCTGCAAGCTGCTGATCCTGCTACCA-CAACCCTTGGACTGGTCTGATCTTAGACTGGG
581 TCCCCCTCTGCATGCTGCCGATCCTGCT-GCAGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * *
11431901 AATGAACTCCGTATGCCTAAGCCAACCGACG---AAACGAGCGAGCGGGCGGGCACTACGTCGGC
645 AATGAACTCCGTATGCCTAAGCCAACCGACGAAAAAACGGGCGGGCGGGCGGGCACTACGCCGGC
* *
11431963 CAGAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
710 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * *
11432028 AATTCTACATGCCAATACCATTTTTTTGGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTCAC
775 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
** * **
11432092 GTGAAGTTTCATGGCAAGACGACTAATTTTCTATTTTTCATGATTTTCAAAAC-TTTT
840 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * *
11432149 AGCGGTTCGGGATTTTTTAAACTTTTTTTGGAAGGAGTTTTGG-CCCAAAGCTTGGTAGACGTGA
1 A-CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-CTTGGTAGACGTGA
* **
11432213 TCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTG
64 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
* * *
11432278 TAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAGCCTGTAAA
129 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
11432343 ATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
194 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
11432408 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCACCTCGATCG-CTG
259 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGTC-G
* * ** **
11432472 AAACACCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCCACGATGGTGCCCC-------AAAA
322 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAA
*
11432530 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTT
387 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTT
* * * * *
11432595 AGACGGGGAATGAACTTCGTATGCTTAAACTGGGAATGAACTCCTTAAT-CCTAAGTCAACCCAC
452 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT-ATGCCTAAGTCAACCCAC
* ** * * * * * * *
11432659 GAAACGAGCGTGCGGGCGCTCAGTCATCCAGAGGGGTGAGATGTGCAACTCAGGGATCGACCGAG
516 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGG
* * * * * * * *
11432724 TCGCCCTCTGCAAGCTGCTGATCCTGCTACCA-CAACCCTTGGACCGGTCTGATCTTAGACTGGG
581 TCCCCCTCTGCATGCTGCCGATCCTGCT-GCAGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* *
11432788 AATGAACTCCGTATGCCTAAGCCAACCGACG---AAA----CGAGCGGGCGGGCACTACGTCGGC
645 AATGAACTCCGTATGCCTAAGCCAACCGACGAAAAAACGGGCGGGCGGGCGGGCACTACGCCGGC
* *
11432846 CAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
710 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
11432911 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCAC
775 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
11432976 GTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
840 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * *
11433034 TCGATTCAAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATC
1 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
11433099 CTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
66 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
* * **
11433164 ACCATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATGGCTACTATCAGCAAACCTGTAAAAT
131 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
11433229 TTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAA
196 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
11433294 GGCCAAGTACTAGCACCCATCTCACATCATGTGCGTACACCCCCCTCCCCGGCCCCGCGATCGCC
261 GGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA--CACC-CCCCGGCCCCCCGATCGTC
* * ** * * ** **
11433359 AGAACCCCAATGACGCTAGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCTTGACAAAG-AA
321 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAA
* * * *
11433423 AATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCT
386 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCT
* * * * * * *
11433488 TAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATTAACTCTGCATGCCTAAGTCAACCCAT
451 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
11433553 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGAGCAAGCCGGGGATCGGTCGGG
516 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGG
* * * *
11433618 TCCCCCTCTGCATGCTACAGATCCTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
581 TCCCCCTCTGCATGCTGCCGATCCTGCTGCAGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
* *
11433683 ATGAACTCCGTATGCCTAAGCCAACCGACG---AAA----CGAGCGGGCGGGCACTACGTCGGCC
646 ATGAACTCCGTATGCCTAAGCCAACCGACGAAAAAACGGGCGGGCGGGCGGGCACTACGCCGGCC
* *
11433741 AGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
711 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
11433806 TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
776 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* *
11433871 TGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
841 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * *
11433928 TCGATTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
1 ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
11433993 CTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
66 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
* * **
11434058 ACCATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATGGCTACTATCAGCAAACCTGTAAAAT
131 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
11434123 TTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAG
196 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * **
11434188 GGCCAAGTACCAGCATCCATCACACATCATGTGCGCACACCCCGCCCGACCCCCCCGATCACCGG
261 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCG-GCCCCCCGATCGTCGG
* * * *
11434253 AACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAAAAAAA
323 AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAA
* * * * *
11434318 TACGGCACCAGCACATGCCCGAGCCCAGCTTGTGCTGCCGCAACTCTCAGTCTAATCCGATCTTA
388 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTA
* *
11434383 GACTGGGAATTAACTCCGTATGC-TAGACT-GGAATGAAC
453 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
11434421 CCAGTCTAAG
Statistics
Matches: 6103, Mismatches: 525, Indels: 241
0.89 0.08 0.04
Matches are distributed among these distances:
877 47 0.01
878 12 0.00
879 572 0.09
880 55 0.01
881 21 0.00
882 17 0.00
883 162 0.03
884 327 0.05
885 12 0.00
886 7 0.00
887 292 0.05
888 609 0.10
889 10 0.00
890 3 0.00
891 14 0.00
892 79 0.01
893 84 0.01
894 763 0.13
895 357 0.06
896 669 0.11
897 75 0.01
898 4 0.00
899 227 0.04
900 559 0.09
901 11 0.00
902 57 0.01
903 115 0.02
904 219 0.04
905 19 0.00
906 49 0.01
907 2 0.00
908 3 0.00
909 215 0.04
910 359 0.06
911 74 0.01
912 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (897 bp):
ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAAC
CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGC
GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGAC
TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCC
CTCTGCATGCTGCCGATCCTGCTGCAGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGACGAAAAAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
Found at i:11433046 original size:26 final size:26
Alignment explanation
Indices: 11433012--11433062 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11433002 TTTTCTATTT
* *
11433012 TTCATGATTTTTGAAACTTTTTTCGA
1 TTCAAGATTTTTGAAAATTTTTTCGA
*
11433038 TTCAAGATTTTTTAAAATTTTTTCG
1 TTCAAGATTTTTGAAAATTTTTTCG
11433063 GAAGGATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.55
Consensus pattern (26 bp):
TTCAAGATTTTTGAAAATTTTTTCGA
Found at i:11433538 original size:26 final size:26
Alignment explanation
Indices: 11433486--11433538 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11433476 CCGGTCCGAT
* *
11433486 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGCATG
*
11433512 CTTAGACTAGGAATTAAC-TCTGCATG
1 CTTAGACTAGGAATGAACTTC-GCATG
11433538 C
1 C
11433539 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGCATG
Found at i:11433940 original size:26 final size:26
Alignment explanation
Indices: 11433906--11433956 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11433896 TTTTCTATTT
* *
11433906 TTCATGATTTTTGAAACTTTTTTCGA
1 TTCAAGATTTTTGAAAATTTTTTCGA
*
11433932 TTCAAGATTTTTTAAAATTTTTTCG
1 TTCAAGATTTTTGAAAATTTTTTCG
11433957 GAAGGAGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.55
Consensus pattern (26 bp):
TTCAAGATTTTTGAAAATTTTTTCGA
Found at i:11434472 original size:26 final size:26
Alignment explanation
Indices: 11434439--11434494 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
11434429 AGATCGGATT
*
11434439 GGAGTTCATTCTTAGTCTAAGCATAC
1 GGAGTTCATTCCTAGTCTAAGCATAC
11434465 GGAGTTCATTCCTAGTCTAAGCATAC
1 GGAGTTCATTCCTAGTCTAAGCATAC
11434491 GGAG
1 GGAG
11434495 CGTAAGGGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
GGAGTTCATTCCTAGTCTAAGCATAC
Found at i:11434535 original size:26 final size:26
Alignment explanation
Indices: 11434502--11434554 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11434492 GAGCGTAAGG
* *
11434502 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
11434528 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
11434554 G
1 G
11434555 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:11435431 original size:26 final size:26
Alignment explanation
Indices: 11435395--11435447 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11435385 GTTGACTTAG
*
11435395 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
*
11435421 GCATACGAAGTTCATTCATAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
11435447 G
1 G
11435448 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:11436249 original size:107 final size:107
Alignment explanation
Indices: 11436063--11436261 Score: 251
Period size: 107 Copynumber: 1.9 Consensus size: 107
11436053 ATCGATCCAC
* * * * *
11436063 GGCTTGCGCATCCCGACTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGTGTTGTCGGTTCGTTTAG
1 GGCTTGCGAATCCCGACTCTCTGGCCGGCGTAGTGCCCGCACGCTCATGTTGTCGGTTCGCTTAG
*
11436128 GCAAACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGA
66 GCAAACGAAGTTCATTCCCAATCTAAGATCGGACCAGACCGA
* * *
11436170 GGCTTGCGAATCCCGTCTCTCTGGCCTGC-TAAGTGCCCGCACGCTCAT-TTCGTGGGTT-GACT
1 GGCTTGCGAATCCCGACTCTCTGGCCGGCGT-AGTGCCCGCACGCTCATGTT-GTCGGTTCG-CT
* *
11436232 TAGGCATACGAAGTTCATTCCCAGTCTAAG
63 TAGGCAAACGAAGTTCATTCCCAATCTAAG
11436262 CATACAGAGT
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
106 4 0.05
107 74 0.95
ACGTcount: A:0.17, C:0.30, G:0.27, T:0.26
Consensus pattern (107 bp):
GGCTTGCGAATCCCGACTCTCTGGCCGGCGTAGTGCCCGCACGCTCATGTTGTCGGTTCGCTTAG
GCAAACGAAGTTCATTCCCAATCTAAGATCGGACCAGACCGA
Found at i:11436748 original size:26 final size:26
Alignment explanation
Indices: 11436718--11436768 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11436708 GTTGACTTTG
* *
11436718 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAAATCCCAGTCTAA
11436744 GCATACGGAGTTAAATCCCAGTCTA
1 GCATACGGAGTTAAATCCCAGTCTA
11436769 CGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAAATCCCAGTCTAA
Found at i:11438473 original size:26 final size:26
Alignment explanation
Indices: 11438437--11438489 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11438427 GTTGACTTAG
*
11438437 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11438463 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11438489 G
1 G
11438490 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11439370 original size:26 final size:26
Alignment explanation
Indices: 11439340--11439392 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11439330 GTTAACTTAG
11439340 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11439366 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11439392 G
1 G
11439393 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11439980 original size:898 final size:900
Alignment explanation
Indices: 11437135--11440671 Score: 5106
Period size: 903 Copynumber: 3.9 Consensus size: 900
11437125 GTCCGAAATG
** * * *
11437135 CAAAAAGTTTCAAAAATCGTGAAAAATAGTAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAG
1 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
11437200 GCTTAAGGGACCATTGT-TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA-ATGGAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
*
11437263 ATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGC
131 ATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * *
11437328 GTAATGCCCGCCTGCCCGCCC-CCTCACTCGTTTCCTCGGTTGGCA-TCGGCATACAGAGTTCAT
196 GTAGTGCCCGCCCGCCCGCCCGCC-CGCTCGTTTCCTCAGTTGG-ATTAGGCATACGGAGTTCAT
* * * * * *
11437391 TCCCAGTTTAAGACCGGACCAGACTAAGGGTTGCAGCAACAGGATCGGCAGCACGTAGATGGGGA
259 TCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * ** * *
11437456 CCCGGCCAATCCCCGGATTGCGCATCCCACCCCTCTGGCCGACTGAGTGCTTGCACACTCGTTCC
324 CCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC
* * * * * *
11437521 GTGTGTTGACTTAGGCGTA-TGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAATCTA
389 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
11437585 AGATTGGACCA-GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGATGCCGTAT
454 AGATCGGACCAGGACC-A-GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
11437649 TTTTCTTCGCTGGGGCACCATCGCCGAAGCATCGCCGAAGAACCTGACTGACGGCATT-GGGTTC
517 TTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTT
* * *
11437713 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGATAGTTGGCCCT
582 CGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
11437778 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
646 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
11437843 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGCCA
711 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
11437908 CAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
776 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
11437973 TCATGTCTACCAAGTTTAGGACCAAAAATCCTTCCGAATAAATTTTAAAAAATCCCGAACCA
841 TCACGTCTACCAAGTTT-GGACC-AAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCA
* *
11438035 CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAG
1 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
11438100 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* *
11438165 ATGTACCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGC
131 ATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
11438230 GTAGTGCCTGCCTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
196 GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCCTCAGTTGGATTAGGCATACGGAGTTCATTC
* * ** * * * *
11438295 CCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGTAGTAGGATCGGCAGCCCGTAGAGGGGGACC
261 CCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * * * *
11438360 CGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGCCCGGCTGAGCGCACGCACGCTCGTTTCGT
326 CGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
*
11438425 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
391 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
11438490 ATCGGA-CTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTT
456 ATCGGACCAGGACC-A-GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
** * * * *
11438554 TTCTTTACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGG-TTCT
519 TTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTTC-
*
11438618 GACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
583 GACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
11438683 AAATTGG-CCCTTATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAAAGAGCATTTAAGATT
647 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
11438747 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCAC
712 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
11438812 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
777 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
11438877 CACGTCTAACAAGTTTGGATCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCA
842 CACGTCTACCAAGTTTGGA-CCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCA
11438938 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
11439003 GCTTAAGGGACCATTTTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
11439068 ATGTGCCCAAACCCACTTACCAACCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGC
131 ATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * *
11439133 GTAGTGCCCACCCGCCCGCCCGTCCGCTCGTTTCATCAGTTGGATTAGGCATATGGTGTTCATTC
196 GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCCTCAGTTGGATTAGGCATACGGAGTTCATTC
* * * *
11439198 CCAGTCTAAGATTGGACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACACAGAGGAGGACC
261 CCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* ** * *
11439263 CGACCGATCCCCGGGTTGCGCATCCTGCCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCAT
326 CGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
* *
11439328 GGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
391 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
** * *
11439393 ATCGGA-CAGGA-C-GGTTGCGGTAGCACATACTTGGCTCGGGCACT-TGCTGGTGCCGCATTTT
456 ATCGGACCAGGACCAGGTTGCGACAGCACATGCTGGGCTCGGGCA-TGTGCTGGTGCCGCATTTT
* *
11439454 TCTTCG-TCAGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGTATTGGGGTTTCG
520 TCTTCGCT-GGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTTCG
* * *
11439518 ACGATCGAGGGGGCCGGGGGGTATGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTAT
584 ACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
11439583 ATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTGAAAGAGCATTTGAGATTT
649 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTT
*
11439647 TACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
713 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
11439712 AAATCTTGTACATTTTGATTTTTTGGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATC
778 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* *
11439776 ACGTCTACCAAGTTTGGGACCAAAATCCTTCCGAAAAAATTTTTAAAAAATCCCAAACCG
843 ACGTCTACCAAGTTT-GGACCAAAATCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCA
* *
11439836 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCTATGAAACTTCACGTGAAG
1 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
11439901 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAG-AGAAATATGAA
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAA
* *
11439965 CATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
130 GATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
11440030 CGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCCTCGGTTGGCTTAGGCATACGAAGTTCATT
195 CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCCTCAGTTGGATTAGGCATACGGAGTTCATT
* * * * * *
11440095 CCCAGTCTAAGATCGGACCGGA-CAGAAGGTTGCCGTAGTAGGATCGGTAGCACGCAGAGGGGGA
260 CCCAGTCTAAGATCGGACCAGACCA-AGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * *
11440159 CCCAACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCGCCCGCATGCTCATTTC
324 CCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC
* *
11440224 GTGGGTTGACTTAGGCATACGGAGTTCTTTCACAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
389 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
11440289 AGATTGGATC-GGACCAAGGGTTACGACAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
454 AGATCGGACCAGGACC-A-GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
11440353 TTTTCTTCGCTGGGGCACCATTGTCGGAGCATCGTCGGAGAATCTGACTGGCGGCATTGGGGTTT
517 TTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTT
* * * *
11440418 CAATGAT--TGGGGGCC-GGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
582 CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
11440480 ATATTGGCCCACTATCACTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
647 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
11440545 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGAT-TGAAATGCGGACACTTTTTTGAAATGGTCA
712 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
11440609 CAAAATCTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
776 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
11440672 CCATGAAACT
Statistics
Matches: 2372, Mismatches: 235, Indels: 60
0.89 0.09 0.02
Matches are distributed among these distances:
897 15 0.01
898 537 0.23
899 450 0.19
900 117 0.05
901 39 0.02
902 349 0.15
903 796 0.34
904 68 0.03
905 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
ATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCCTCAGTTGGATTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACCAGGACCAGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCGCTGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTTCGAC
GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
TCTACCAAGTTTGGACCAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCA
Found at i:11440267 original size:26 final size:26
Alignment explanation
Indices: 11440238--11440290 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11440228 GTTGACTTAG
*
11440238 GCATACGGAGTTCTTTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
11440264 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
11440290 G
1 G
11440291 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:11441779 original size:26 final size:26
Alignment explanation
Indices: 11441743--11441795 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11441733 GTTGACTTAG
11441743 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11441769 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11441795 G
1 G
11441796 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11443051 original size:874 final size:865
Alignment explanation
Indices: 11441195--11445294 Score: 5240
Period size: 898 Copynumber: 4.7 Consensus size: 865
11441185 ATGTGCGATG
* *
11441195 GTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTCTACA---C-----TTT-GC---
1 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
11441248 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
66 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* *
11441313 TCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTC-AAAATTGTGAAAAATAGAAAACG
131 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
11441377 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
196 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** *
11441442 AAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
261 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
11441507 CGGCTTGCGCATCCTGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCCACCCGCCCGCTCGTTTCG
326 CGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCG
* ** *
11441572 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCAGATTGAGGGCTGC-GT
387 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGT
* * * * * * *
11441636 AGCAGGATTGGTAGCACGTAGAGGGGGACCCGGCCCATCCTCGGCTTGCGCATCCCGCCCCTCTG
452 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTG
* *
11441701 GCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
517 GCCGGCTGAGCACCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
11441766 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACGAGGGTTACGGCAGCACATGCTG
582 TAAG-AT-C-G-G---A----C---C----A---GA-C---CGAGGGTTGCGGCAGCACATACTG
* * * * *
11441831 GGTTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCAT-CA-C-CGGAGAACCTGACAG
622 GGCTCGAGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCATCCATCTCGGAGAACCTGACCG
11441893 GCGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGG-GGGTGTGCGCACATGATGTGCGATGG
687 GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGGGTGTGCGCACATGATGTGCGATGG
* *
11441954 CTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
751 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
11442019 TGAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGT
816 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGT
* * *
11442069 GTCT-AGAATGTGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
1 GTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
11442133 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
65 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * *
11442198 ATCCGAAAAAATTTT-AAAAATGCCGAATCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
130 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* *
11442262 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTTTATGAATTTACAAGCCAT
195 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
11442327 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA-CTACCACCCTATCGATCC
260 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
** *
11442391 ACGGCTTGCGCATCCTGTCTCTCTTACCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
325 ACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * *
11442456 GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGC
390 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGC
* *
11442521 AGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCT
455 AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
* * * *
11442586 GGCTGAGCACCCGTACGCTAGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCTAGTCTAA
520 GGCTGAGCACCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
11442651 GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTG-CACATTT
585 GATCGGACCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCGAGCATGTGTTGGTGCCACATTT
*
11442715 TTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
650 TTCTTCGCCGGGG---CA---TC----CATC-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * *
11442780 ACGATTGGGGTGGCCGGGGGGTGGGTGTGCGCACATGATGTGTGATGAGTGCTGGTACTTGGCCC
704 ACGATCGGGG-GGCCGGGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
11442845 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCGCTTAAAAAGCATTTGAGA
768 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
11442910 TTTTACAGGTTTGCTACCAGTAGCCATTAAAGT
833 TTTTACAGGTTTGCTACCAGTAGCCATTAAAGT
* *
11442943 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACTAAGTCTTGTACACTTCGAGTTTTTAGCTGA
1 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
11443008 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACCCCT
66 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * **
11443073 TCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
131 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * * *
11443138 AGTCATCTTGCCATGAAACTCCACGTGAAGTCTTAAGGGACCATTCTATGAATTTACAAGCCATA
196 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
11443203 AAAATGGCATAGTCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
261 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
11443268 TGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCGTTTTGTAGG
326 CGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * * * * *
11443329 TTGGCTTAGGCAGACGGAGTTCATTCCTAGTATAAGATCGGACCGGATCGAGGGTTACGGCAGCA
391 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCA
* ** * * *
11443394 GGATCGGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTGCCCATCCCGCCCCTCTGGCCG
456 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
** * *
11443459 ATTGAGTACCCGCACGCTCA-TTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
521 GCTGAGCACCCGCACGCT-AGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT--C---C---
* *
11443523 GCATATGGAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTGCAGCAGCACATACTGGG
577 -C------AG-TC--T---A----A-GATCGGACCAGACCGAGGGTTGCGGCAGCACATACTGGG
* *
11443588 CTC-AGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCGTCGCCGGAGTATCACTGGAG
624 CTCGA-GCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCA---T--CC-----ATCTC-GGAG
* * * *
11443652 AACCTGACCGACGGCATTGGGGTTCCGACAATCGGGGGCGCCGGGGGGCGTGTGTGCGCACATGA
677 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGGGTGTGCGCACATGA
*
11443717 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
741 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
11443782 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
806 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGT
* *
11443842 GTCTGAAATGGGAACACTTTTTTC-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGA
1 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * *
11443906 ATTTTTTTATGCATGCCGATAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAATCCT
66 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * **
11443971 TCCAAAAAAATTTTCAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
131 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
11444036 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
196 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * *
11444101 AAAATGGGATTTGCACGTAGAAATATGAAGATGTGCATAAACCCACCTATCACCCTATCGATTCA
261 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** * * * * *** * * *
11444166 TGGCTTTTGCAACCCGTCTCTCTGGCTGTCGTAGTGCCCGCCCGCCCGCCAATTCATTCCATCGG
326 CGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * *
11444231 TTCGCTTAGGCATACGGAGTTCATTCCCAATCAAAGATCAGACTAGACCAAGGGTTGCAGCAGCA
391 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCA
* * *
11444296 GGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCTGCCCCTCAGGCCG
456 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * * *
11444361 GCTGAGCGCCCGTACGCTTGTTTCG-GTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
521 GCTGAGCACCCGCACGCTAGTTTCGTG-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11444425 GATCAGACCGGACCGAGGGCTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTT
585 GATCGGACCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCGAGCATGTGTTGGTGCCACATTT
** * *
11444490 TTCTTTACCGGGGCA-CCATCGTCGGAGAACCTGACCGGCAGCGTTGGGGTTCCGACGATCGGAG
650 TTCTTCGCCGGGGCATCCATC-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-G
* * *
11444554 GGGCCAGAGGGT--GTGT--GCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
713 GGGCCGGGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
11444615 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
778 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
11444680 TTGCTACCAGTAGCCATTAAAGT
843 TTGCTACCAGTAGCCATTAAAGT
* *
11444703 GTCTGAAATGGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
1 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
11444768 ATTGTTTTGTGTATGCCAAAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
66 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * *
11444833 TCCGAAAAAATTTTAAAAATTCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
131 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
11444898 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
196 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * * *
11444963 AAAATGGCATTGGCACATAAAAATATGAAGACG-GCCTAAACCCACCTGCGACCTTATCGATCCA
261 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
11445027 CGGCTTGTGCATCCCGTCTCTCTGGCCGATGTAGTGCCTGCCCGCCCGCCCGCCCGCCTGCTTGT
326 CGGCTTGCGCATCCTGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCGCCCG-CT-C--GT
* * * *
11445092 TTTGTCGGTTGGCTTAGGCATATGAAGTTAATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
383 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * * * *
11445157 CAGTAGCAGGATCGACAGCACACAGAGGAGGACCCGATCGGTCTCCGGCTTGCGCATTCTGCCCC
448 CAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCC
* *
11445222 TCTGGCCAGG-TGAGCACCCACACGCTCA-TTTCGTGGGTTGACTCAGGCATACGGAGTTCATTC
513 TCTGGCC-GGCTGAGCACCCGCACGCT-AGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
11445285 CCAGTCTAAG
576 CCAGTCTAAG
11445295 CATGCGGAGT
Statistics
Matches: 2837, Mismatches: 293, Indels: 197
0.85 0.09 0.06
Matches are distributed among these distances:
856 19 0.01
857 41 0.01
859 2 0.00
860 1 0.00
861 206 0.07
862 246 0.09
863 5 0.00
864 1 0.00
865 61 0.02
866 5 0.00
867 3 0.00
868 2 0.00
869 174 0.06
870 45 0.02
871 1 0.00
872 181 0.06
873 5 0.00
874 305 0.11
875 147 0.05
876 121 0.04
877 2 0.00
878 1 0.00
879 1 0.00
880 1 0.00
881 83 0.03
882 124 0.04
883 2 0.00
884 1 0.00
885 74 0.03
886 205 0.07
887 4 0.00
888 2 0.00
890 1 0.00
893 2 0.00
894 1 0.00
896 5 0.00
897 3 0.00
898 358 0.13
899 224 0.08
900 1 0.00
901 1 0.00
902 170 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (865 bp):
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCA
GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
GCTGAGCACCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCGAGCATGTGTTGGTGCCACATTTT
TCTTCGCCGGGGCATCCATCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
CCGGGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTACCAGTAGCCATTAAAGT
Found at i:11443533 original size:26 final size:26
Alignment explanation
Indices: 11443497--11443547 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11443487 GTTGACTTAG
11443497 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11443523 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
11443548 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11445304 original size:26 final size:26
Alignment explanation
Indices: 11445268--11445339 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
11445258 GTTGACTCAG
11445268 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11445294 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11445320 GCATATGGAGTTCATTCCCA
1 GCATACGGAGTTCATTCCCA
11445340 ATCCAAGATC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11446570 original size:26 final size:26
Alignment explanation
Indices: 11446532--11446584 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11446522 GTTGACTTAG
11446532 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
11446558 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
11446584 G
1 G
11446585 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:11447474 original size:26 final size:26
Alignment explanation
Indices: 11447438--11447512 Score: 141
Period size: 26 Copynumber: 2.9 Consensus size: 26
11447428 GTTGACTCAG
11447438 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11447464 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11447490 GCATATGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
11447513 CAAGATCAGA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11447865 original size:26 final size:26
Alignment explanation
Indices: 11447828--11447880 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11447818 GTTATCTTAG
*
11447828 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
11447854 GCATAC-GAAGTTCATTCCCAGCCTAA
1 GCATACAG-AGTTCATTCCCAGCCTAA
11447880 G
1 G
11447881 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:11448759 original size:26 final size:26
Alignment explanation
Indices: 11448717--11448795 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
11448707 GTTGACTCAG
* *
11448717 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCCAA
*
11448743 GGATACGGAGTTCATTCCCAGTCCAA
1 GCATACGGAGTTCATTCCCAGTCCAA
*
11448769 GCATACGGAGTTCATTCACAGTCCAA
1 GCATACGGAGTTCATTCCCAGTCCAA
11448795 G
1 G
11448796 ATCAGATCGA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCCAA
Found at i:11449685 original size:26 final size:26
Alignment explanation
Indices: 11449649--11449699 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11449639 TGACTTAGGC
*
11449649 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGGAGTTCATTCCCAGCCTAAGG
*
11449675 ATACGGAGTTCATTTCCAGCCTAAG
1 ATACGGAGTTCATTCCCAGCCTAAG
11449700 ATCTGATCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGCCTAAGG
Found at i:11450558 original size:896 final size:894
Alignment explanation
Indices: 11447722--11453281 Score: 6908
Period size: 874 Copynumber: 6.2 Consensus size: 894
11447712 CCTTATATTG
* * * * * **
11447722 GCAGGATTGGCAGCACGCAGAGGGAGACCTGACCGATCCCCAGCTTGTACATCCCGCCCCTCTGG
1 GCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * **
11447787 CCGACCGAGCACCCGCACGCTC-TATTCGGGGGTT-ATCTTAGGCATACAGAGTTCATTCCCAGT
66 CCGACTGAGCACCCGCACGCTCGT-TTCGTGGGTTGA-CTTAGGCATATGGAGTTCATTCCCAGT
* *
11447850 CTAAGCATACGAAGTTCATTCCCAGCCTAAGATCAGATTGGACCGAGGGTTGCGGCAGCACATGC
129 CTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGC
** * *
11447915 TGGGCTC-GGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCG
194 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC-
* * *
11447979 GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCTGGGGGTGTGCGCACATGAT
258 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* *
11448043 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAGCCCTCATCAAACCTCGAGAACT
323 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
11448108 CAAACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
388 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
11448173 AATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGCATTTTT
453 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
11448238 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAA
518 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * ** * *
11448303 AAAATTTTAAAAAATCCCAAAGCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
583 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
11448368 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
648 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
11448433 GCATTGGCATTCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTT
713 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
11448498 GCACATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGG
778 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* *
11448559 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTA
843 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAGGGTTGCAGCA
** * * * * *
11448611 GCAGGATCGATAGCACATAGAGGGGGACCCCG-TCGATCTCTGGCTTGCACATCCCGCCCCTCTG
1 GCAGGATCGGCAGCACACAGAGGGGGA-CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * *
11448675 GCTGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACTCAGGCATATGGAGTTCATTCCCAGTC
65 GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
*
11448740 TAAGGATACGGAGTTCATTCCCAGTCCAAGCATACGGAGTTCATTCACAGTCCAAGATCAGATCG
130 TAAGCATACGGAGTTCATTCCCAG--C---C-TA---AG---------A-T-C-AGATC-G---G
* *
11448805 AACCGGACTGAGGGTTGCAGCAGCACATGCTGGGC-CTGGGCATGTGTTGGTGCCGTATTTTTCT
170 -A-C---C-GAGGGTTGCGGCAGCACATGCTGGGCTC-GGGCATGTGTTGGTGCCGCATTTTTCT
* ** * * *
11448869 TCGTTGGGAAACCATCGCCGGAGCATCGTCGAAGAACCTGACCGGCGTCATTGGGGTTCCGACGA
228 TCGTCGGGGCACCATCGCCGGAGCATCGCCG-AGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * * *
11448934 TCGGGGGGGCCGGGGGGTGTGTGCACACATGATGTACGATGGGTGCCGGTACTTGGGCCTTATAT
292 TCGGGGGGGCC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
11448999 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTAC
355 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
11449064 AGGTTTGCTGCCAGTAGCCTATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAA
420 AGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAA
* * * * *
11449129 ATTTTGTACACTTCGATTTTTTAGCTGAA-TTTTTTATGCATGCTAACAAAAGTACAAGGATCAC
484 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * **
11449193 TTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAG
549 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* *
11449258 TTTCAAAAATCATGAAAAATAGAAAAAACGAGTGGTCCTGCCATGAAACTTCACGTGAAGGCTTA
614 TTTCAAAAATCATGAAAAATAG--AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* **
11449323 AGGGACCATTGCATGAATTTACAAGTGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
677 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * *
11449388 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCAGTCTCTCTAGCC-AGCGTAG
742 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAG
* ** * *
11449452 TGCCCGCCCGTCTACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-TTCAGTCTAAGA
806 TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT-AGTCTAAGA
* * *
11449516 TCAGACCAGACTGAGGGTTGTAGCA
870 TCAGACCGGATTGAGGGTTGCAGCA
* * * *
11449541 GTAGGATCGGTAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGG
1 GCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* *
11449606 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
66 CCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
* * * * *
11449671 AAGGATACGGAGTTCATTTCCAGCCTAAGATCTGATCGAACCGAGGGTTGCGGCAGCACATCCTG
131 AAGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTG
* * *
11449736 GGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCAGA
196 GGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC-GA
* ** * * *
11449801 GAACCTGACCGACGACATTGATGTTCCGATGATCGGGGGGGACGGGGGGTTGTGCACACATGATG
260 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATG
* * * ** * *
11449866 TGTGATGGGTGCTGATACCTGGCCCTTATATTGGCCCGTTATCCCTCATCAAACTTTGAGAACTC
324 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
11449931 ACACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTCGCTGCCAATAGCCATTAAAGTGTCTGAA
389 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
**
11449996 ATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
454 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * **
11450061 TGTGCATGCCATCAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCCTTCTAAAA
519 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
11450126 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
584 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * **
11450191 CTGCCATGAAACATT-ACGTGAAGGCTTAAGGGATCATTGCATGAATTTACAAGTGATAAAAATG
649 TTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**
11450255 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
713 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
11450320 GCGTATCCCGTCTCTCTGGCCGGCGTAGTGCACGCCCACCCGCTCATTTCGTCGGTTGGCTTAGG
778 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * **
11450385 TATACGGAGTTCATTCCTAGTCTAAGATCTGACCGGATTGAGGGTTGTGGCA
843 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAGGGTTGCAGCA
* * * * *
11450437 GCAGGATTGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTAG
1 GCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
** * **
11450502 CCGACTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGTTGTTCATTCCCAGTCT
66 CCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
* * *
11450567 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGATCAAGGGTTGCGGCAGCACATGCT
131 AAGCATACGGAGTTCATTCCCAGCCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCACATGCT
* * * * *
11450631 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGTCGG
195 GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CCG
* ** * *
11450696 AGAACCTGACTGACGGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGTGTGCGTACATGATG
259 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
*
11450761 TGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
324 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
11450826 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
389 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
11450891 ATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
454 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
11450956 TATGCATGCCAAAAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAA
519 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* **
11451021 AAATTTTAAAAAATCCCGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
584 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
11451086 TTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
649 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * **
11451151 CATTGGCACACAGAAATATGAAGATGTGCATAAAGTCACCTACCACCCTATCGATCCACGGCTTG
714 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
11451216 CGCATCCCGTCTGTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTTGGTTG
779 CGCATCCCGTCTCTCTGGCCGACGTA------G-T-GCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
11451281 GCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCA
836 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAGGGTTGCAGCA
* ** * *
11451340 GCAAGATCGGCAGCATGCAGAGGGGGAACCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
1 GCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * *
11451405 CCGACTGAGCGCTCGCATGCTTGTTTCGGGGGTTGACTTAGTCATATGGAGTTCA-T-----TC-
66 CCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
** *
11451463 ---C---C--A----A-T------CTAAGATCAGATCGGA-C-AGGGTTGCGATAGCACATACTG
131 AAGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTG
* * ** *
11451507 GGCACGGGCAT-TGCTGGTGTAGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGCCGAA
196 GGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG-A
* * ** * * * *
11451571 GAACCTGACCGGCGGCATTAGGGTTCCGGTGATCAGGGGGGCCAGGGGGTGTGCGCATATGATGC
260 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
11451636 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGATAACTCA
325 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
11451701 CACCCCCTTAAAGAGCCTTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAA
390 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
11451766 TGGGGATATTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGATTTTAGCTGAATTTTTTT
455 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
11451831 GTGCATGCCAACAAAAATACAAGGATCACGTCTA-AAAGGTTTGGGGTCAAAACTCCTTCTGAAA
520 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * * * *
11451895 AAATTTTAAAAAATCTCGAACAGTAAAAAGTTTTGAAAATCGTGAAAAAAAGAAAACAAGTCATC
584 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
11451960 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
649 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
11452025 CATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCTTATCGATCCACGGCTTG
714 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
11452090 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCCTGCCCGCCTGCTCGTGTCGTCAGTTG
779 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-G--C-CC-GCTCGTTTCGTCGGTTG
* * * * * * * *
11452155 GCTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCGGACTGGACTAAGGGTTGCGGTA
836 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAGGGTTGCAGCA
* * * * * * * *
11452214 GTAAGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCTGGCTTGTGCATCCCGGCCCTCTGG
1 GCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * ***
11452279 CTGACTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCT
66 CCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
* * * * *
11452344 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCACATGCTG
131 AAGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTG
** * * * * *
11452409 GGCTCAAGCATGTGTTGGTGCTGCATTTTCCTTCGTCGGGGCACCGTCACCGGAACATCGCCGAG
196 GGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAG
* *
11452474 AACCTGGCCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTG
261 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
11452539 CGATGGGTCCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGTACTCAC
326 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
11452604 A-CCCCTTAATGAGCATTTGAGATTTTACAGCTTTGCTGCCAATAGCCGTAAAAGCGTCTGAAAT
391 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11452668 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTG
456 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
**
11452733 TGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTACCGAAAA
521 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCGAAAA
* * * * *
11452797 AATTTT-AAAAATCTCAAATCGT-AAAAGTTTCAAAAATTATGAAAAATAGAGAAA-TAGTCGTC
585 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA-AAACGAGTCGTC
* * * * * *
11452859 TTGCCATGCAATTTCATGTGATGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAATAATGG
649 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
11452924 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTA
714 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
11452989 CGCATCCTGTCTCTCTAGCCGACGTAGTGCCTGCCCGTCCGCCCGCCTGCTCGTTTCGTCGGTTG
779 CGCATCCCGTCTCTCTGGCCGACGTA--G--TG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
11453054 GCTTAGGCGTACAGAGTTCATTCCTAGTCTAAGATC-GAACTGGATCGAGTGTTAC-GACA
836 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCGGATTGAGGGTTGCAG-CA
** * *
11453113 GCAGGATC-G-A-CA-GTAGA-GGTG-CCCG---G--CCCCTGGCTTGTGCAT-CCGCCCC-CT-
1 GCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCC-GGCTTGCGCATCCCGCCCCTCTG
* ** *
11453164 G-CGACTGAGCACCCGCACAC-AATTTCATGGGTTGACTTAGGCATATGGAGTTCATT-CCA-TC
65 GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
* * *
11453225 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GACTGA-GGTTGCGACAGCA
130 TAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCA
11453282 GGATGGGCCC
Statistics
Matches: 4063, Mismatches: 486, Indels: 253
0.85 0.10 0.05
Matches are distributed among these distances:
866 5 0.00
867 1 0.00
868 2 0.00
869 2 0.00
870 1 0.00
872 1 0.00
873 6 0.00
874 704 0.17
875 30 0.01
876 1 0.00
877 14 0.00
878 1 0.00
880 13 0.00
881 6 0.00
882 38 0.01
883 4 0.00
884 32 0.01
885 16 0.00
886 1 0.00
887 3 0.00
888 10 0.00
889 135 0.03
890 7 0.00
891 1 0.00
893 5 0.00
894 7 0.00
895 456 0.11
896 498 0.12
897 77 0.02
898 236 0.06
899 347 0.09
900 37 0.01
901 175 0.04
902 146 0.04
903 226 0.06
904 3 0.00
905 2 0.00
907 4 0.00
908 2 0.00
909 5 0.00
910 5 0.00
911 2 0.00
912 1 0.00
914 1 0.00
915 1 0.00
916 1 0.00
919 2 0.00
920 26 0.01
921 82 0.02
922 8 0.00
923 4 0.00
924 233 0.06
925 70 0.02
926 156 0.04
928 1 0.00
929 5 0.00
930 205 0.05
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
CCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
AAGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTG
GGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAG
AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAGGGTTGCAGCA
Found at i:11453232 original size:24 final size:26
Alignment explanation
Indices: 11453204--11453254 Score: 79
Period size: 24 Copynumber: 2.0 Consensus size: 26
11453194 GTTGACTTAG
*
11453204 GCATATGGAGTTCATT-CCA-TCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11453228 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11453254 G
1 G
11453255 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 15 0.62
25 3 0.12
26 6 0.25
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11453550 original size:26 final size:26
Alignment explanation
Indices: 11453520--11453571 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11453510 GTTGACTTAG
11453520 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** **
11453546 GCATATGGAGTTCATTTTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11453572 AATCGGATCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11454376 original size:26 final size:26
Alignment explanation
Indices: 11454346--11454398 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11454336 GTTGACTTAG
*
11454346 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAATCTAA
* *
11454372 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAATTCATTCCCAATCTAA
11454398 G
1 G
11454399 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAATCTAA
Found at i:11455279 original size:26 final size:26
Alignment explanation
Indices: 11455249--11455301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11455239 GTTGACTTCG
*
11455249 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
11455275 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11455301 G
1 G
11455302 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11456817 original size:26 final size:26
Alignment explanation
Indices: 11456788--11456840 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11456778 GTTGACTTAG
*
11456788 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
11456814 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11456840 G
1 G
11456841 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11457717 original size:26 final size:26
Alignment explanation
Indices: 11457681--11457733 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11457671 GTTGACTTAG
11457681 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
11457707 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
11457733 G
1 G
11457734 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:11458360 original size:891 final size:893
Alignment explanation
Indices: 11455915--11462612 Score: 8480
Period size: 891 Copynumber: 7.5 Consensus size: 893
11455905 GTTGACTTAG
* * *
11455915 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGGGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
11455980 CTTGGGCATGTGCTGGTGCCGTAGTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCACCGGAGA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * ** * *
11456045 ACCTGACCGACAGCATTAGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTTCGCACATGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
11456110 ATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT--CAC
* * *
11456174 ACCCCTTTAAAGACCATTTGAGATTTTACAGGCTTGCTGCGAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
11456239 GGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACATCGAGTTTTTAGCTGAACTGTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * ** *
11456304 TGCATGCCAAAAAAAATACAACGATCATGTCTATGAAGTTTGGGGCCAAAACTCC-T--AAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
11456366 ATTTTAAAAAAT-TCCGAATCGTAAAAAGTTTCAAAGATCGTGAAAAATAGAAAACGAGTCGTCT
452 ATTTTAAAAAATCT-CGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCT
11456430 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
11456495 ATTGGCACGTAAAAATATGAAAATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
11456559 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTCCGCCTGCTCGTTTTGTCGGTTGG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-C-CG-CC-CC-ACTCGTTTCGTCGGTTGG
* * * * * * **
11456624 CTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCGGA-CTGGATCAACGGTTGCAACAGCAGGA
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAACCGAGGGTTGCGGCAGCAGGA
** * * * * *
11456688 TTAGCAGCATGCAAATGAGGACCCGATCGATCCCCGGCTTGCGCAACCCGCCCCTCTGGCCGGCT
768 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * * *
11456753 GAGCGCCCCCATAG-TCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCTCAGTCTAA
833 GAGCACCCGCA-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
11456814 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCGACAGCACATGCTGGG
* * * ** ** *
11456879 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCAACGGGGCACCATCGCCGGAGCATCTTCAGAGA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
11456944 ACCTGACCGACGGCTTTGGGGTTCCGACGATCAGGGAGG-CAGGGGGTGTGCGCACAAGATGTGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGG-GGCCGGGGGGTGTGCGCACATGATGTGC
* * *
11457008 GATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
11457073 CCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
259 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
11457138 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
11457203 GCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
11457268 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGGAAACGAGTCGTCTT
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTT
* *
11457332 GCCATTAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
11457397 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
11457462 CATCCCGTCTTTTTGGCCGACGTAGTGCCCGCCCG-CCCACTCGTTTCGTCGGTTGGCTTAGGAA
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCACTCGTTTCGTCGGTTGGCTTAGGCA
* ** * * * *
11457526 TA-GGAGTTCATTCCTAGTCTAAGATCATATCGAACCGAGGGTTGCGGTAGCAAGATCGACAACA
712 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * *
11457590 CACAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCGTCTGGCTGGCTGAGCGCCCG
777 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
* * *
11457655 TACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
842 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
11457707 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCGACAGCACATGCTGGG
** * *
11457772 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGAAGA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
** **
11457837 ACCTGACCGGTGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGTA
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
11457902 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACA-
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
11457966 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
11458031 GATATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCA-CTGAATTGTTTTGTG
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTTTTTGTG
** * *
11458095 CAAACCAACAAAAATAGAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * **
11458160 TTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGC
454 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGC
11458225 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
11458290 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTATCCTATCGATCCACGGCTTGCGCA
584 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
11458355 TCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCACCCATCCGGTCGTTCGTTTTGTCGGTTGGCTT
649 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCC--CC--AC--TCGTTTCGTCGGTTGGCTT
* * * ** * * ** * *
11458420 AGGCATACGGAGTTCATTCCCGGTCTAAGATTGGACCGAATTGAAGATTGTAGTAGCAGGATTGG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGG
* * *
11458485 CAGCACGCAGAGGGGGACCCGATCGGTCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGC
772 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
**
11458550 ACCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * ** *
11458607 GCATACAAAGTTCATTCCCAATCTAAGATCGGACAGGAATGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
11458672 CTCGGGCATGTGTTAGTGCCACATTTTTCTTCGTCGGGGCACTATCGCAGGAGCATCGCCGGAGA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * ** * *
11458737 ACCTGACTGACAGCATTGGGGTTCCGGTGATCGGGGGGGCCGGAGGGGTTATGCGCACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGGCCGG-GGGG-TGTGCGCACATGATGT
* *
11458802 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACGT-
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC-TC
11458866 ACACCCCCTTAAAGAGC-------A-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** * *
11458923 ATGGGGACGTTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * *
11458988 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAATCTCCTTCCAAAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
11459053 AAATTGTAAAAAATTCTCGAACCATAAAAAGTTTCAAAAATCA-TGAAAAACAAAAAAAGAGTCG
450 AAATTTTAAAAAA-TCTCGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCG
* *
11459117 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
11459182 GGCATTGGCGTGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCT
578 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** *
11459247 TGTGCATCCCGTATCTCTGATC-GCTGTAGTGCCCGCCCG-----CTCGTTTCGTCGGTTGGATT
643 TGCGCATCCCGTCTCTCTGGCCGGC-GTAGTGCCCGCCCGCCCCACTCGTTTCGTCGGTTGGCTT
* * * * * * * * *
11459306 AGGCATACGGAGTTTATTCCTAGTCTAAGATTGAACCGGACCAAGGGTTGTGGCAGCAGGATCTG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGG
* * * *
11459371 CAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTG-ACATCCTGCCCCTCTAGCCGGCTGAGC
772 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
11459435 ACCCGCACACTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCTCAGTC---
837 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11459489 -C--A---AG---A-T--C-G-----GAT----CTGACCGAGGGTTACGACAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGCGACAGCACATGCTGGGC
* * ** *
11459532 TAGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCTTCGGATCATCGCCGGAGAA
66 TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * *
11459597 CCTGACAGACGGCATTGGGGTTCCGACGATCAGGGGGTCAGGGGGTGTGCGCACATGATGTGTGA
131 CCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * * *
11459662 TGGGTGCCGGTACTTGGCCCTTATATCGACCCCCTATCCCTCATCAAACCTCGAGAAGTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-C
* * *
11459727 CCCTTGAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
11459792 GACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGTTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
11459857 ATGCCAACAAAAAAATAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC-TCTCAAAAAAAT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CGAAAAAAT
* * * * *
11459921 TTTAAAAAAATCTCAAACTGTAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAACGAGTCGTTTTG
454 TTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
11459986 CTATGAACCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
11460051 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
11460116 ATCCCGTCTCTCTGGCTGGTGTACTGCCCGCCCACCCACCCGCCCGCTCGTTTCGTCGGTTGGGT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-----CC-CGC-CCCACTCGTTTCGTCGGTTGGCT
* * * * * * * * *
11460181 TGGGCATACGAAGTTCATTCCCAGTCTAAGATC-CAACCAGACTGAGGATTGCAGCAGCAGGATT
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGA-ACCGAGGGTTGCGGCAGCAGGATC
* * ** * * * *
11460245 GGTAGCACGTAGAGAAGGACCTGGA-CGATCCCCGACTTGCGCATCCCACCACTCTGGCCGGCTG
770 GGCAGCACGCAGAGGGGGACC-CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
11460309 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
11460369 GCATACGGAGTTCATTCCCAGTCTAATATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGACCGAGGGTTGCGACAGCACATGCTGGG
* * * ** ** ** * * *
11460434 CTTGGGCATGTGCTGATGCCTTATTTTTCTTCACCGACGCACCATCACCGGATCATCACCGGAGA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
11460499 ACCTGAACGGCGGCAATGGGGTTCCGACGATCAGAGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCAG-GGGGCC-GGGGGGTGTGCGCACATGATGTG
*
11460564 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAT
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-
* * * *
11460629 GC-CCCCTTAATGAGCATTTGAGATTTTACAAGATTGCTGCCAGCAGCCATTAAAGTGTCTGAAA
257 -CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
11460693 TGGGGACACTTTTTTCATATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
11460758 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
11460823 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
451 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCT
*
11460888 TGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
11460953 ATTGCCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
11461018 ACATCCCGTCTCTTTGGCCGGCATAGTGGCCGCCCGCTTGCCCGCCCGCCCGCTTGCTCATTTCA
646 GCATCCCGTCTCTCTGGCCGGC---GT-------AG--TGCCCGCCCGCCC-C--ACTCGTTTCG
* * * ** * * *
11461083 TCAGTTAGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATTAGA-CCAGATCGAGGGTTACGG
696 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGA-ACCGAGGGTTGCGG
* ** * * * *
11461147 CAGCAGGATCGACAGCACATAGAGGAGGACCCGATCGATCCCCGACTTACGCATACCGCCCCTCT
760 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
11461212 GGCTGGCTGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTGAGGCATACGAAGTTCATTCCCAGT
825 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
11461277 CTAA
890 CTAA
* * * * *
11461281 GCATACGGAGTTCATTGCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGACAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGACCGAGGGTTGCGACAGCAC-A--T--G
* * * * * * *
11461346 CTTGGGCTTGGGCATGTGCTGGTGCCGGATTTTCCTTCGTCGAGGCACCATCGTCGGAGCATCGT
60 C-TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
* * * * *
11461411 CGGAGAACCTGACCGACTGCATTGGGGTTCTGGCAATCGAGGGGGTCGGGGGGTGTGCGCACATG
124 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGTGTGCGCACATG
* * * *
11461476 ATGTGCAATGGGTGCTGGTTCTTGGCCCTTATATGGGCCCCCTATCCC-CTATCAAACCTTGAGA
188 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGA
* *
11461540 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTT
252 ACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
11461605 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
316 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
11461670 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTTCC
381 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * *
11461735 GAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATATACAACGAGT
446 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGT
* *
11461800 TGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
511 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
11461865 ATGGCATTGGCACGCAGAAATATAAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
576 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
11461930 CTTGCACATCCCGTATCTCTGGCCGGACTGTAGCCGCCCGCCCGCCCCTGCCTCGTTTCTTCAGT
641 CTTGCGCATCCCGTCTCTCTGGCCGG-C-GTAG-TGCCCGCCCGCCCC--ACTCGTTTCGTCGGT
* * * * *
11461995 TGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGGATCGGACTGAAGGTTG-TGCA-CAG
701 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAG
* * * ** * * *
11462058 GATTGGTAGCACGTAGAGGGGGACCCGATCGATCCCCACCTTGCGTAACCCACCCCTCTGGCCGG
766 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
11462123 CTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
831 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11462186 GCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
11462251 CTCGGGCATGTGTTGGTGCTGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCAGATA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
11462316 ACCTGACCGACGGCATTGGTGTTCCCATGATC-----G--GGGGGGTGTGCGCACATGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
11462374 ATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
* *
11462439 CCCCTTAAAGAGCATTTGAGATTTTACAAGATTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
11462504 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
11462569 CATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
11462613 AAACGAGTCG
Statistics
Matches: 5073, Mismatches: 601, Indels: 258
0.86 0.10 0.04
Matches are distributed among these distances:
855 1 0.00
856 88 0.02
857 4 0.00
858 7 0.00
859 109 0.02
860 1 0.00
863 3 0.00
864 349 0.07
865 7 0.00
869 2 0.00
870 2 0.00
872 1 0.00
873 1 0.00
875 2 0.00
876 95 0.02
877 74 0.01
879 1 0.00
881 2 0.00
883 1 0.00
885 73 0.01
886 105 0.02
888 1 0.00
889 1 0.00
890 2 0.00
891 637 0.13
892 5 0.00
893 375 0.07
894 26 0.01
895 4 0.00
896 2 0.00
897 168 0.03
898 366 0.07
899 307 0.06
900 321 0.06
901 162 0.03
902 66 0.01
903 186 0.04
904 206 0.04
905 432 0.09
906 4 0.00
907 60 0.01
908 13 0.00
909 3 0.00
910 3 0.00
911 4 0.00
912 221 0.04
913 2 0.00
915 2 0.00
916 9 0.00
917 467 0.09
918 88 0.02
919 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGCGACAGCACATGCTGGGC
TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCACTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11460379 original size:26 final size:26
Alignment explanation
Indices: 11460343--11460394 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
11460333 GTTGACTTAG
11460343 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11460369 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11460395 TATCAGATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11461284 original size:26 final size:26
Alignment explanation
Indices: 11461255--11461307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11461245 GTTGACTGAG
11461255 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
11461281 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11461307 G
1 G
11461308 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11461659 original size:917 final size:900
Alignment explanation
Indices: 11459468--11462612 Score: 4415
Period size: 917 Copynumber: 3.5 Consensus size: 900
11459458 TGACTTAGGA
* * *
11459468 ATACGGAGTTCATTCTCAGTCCAAGATCGGATCTGACCGAGGGTTACGACAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCACATGCTGGGCT
* * * * * ** *
11459533 AGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCTTCGGATCATCGCCGGAGAAC
66 TGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAGAAC
* * **
11459598 CTGACAGACGGCATTGGGGTTCCGACGATCAGGGGGTC-AGGGGGTGTGCGCACATGATGTGTGA
131 CTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCAA
* * * *
11459662 TGGGTGCCGGTACTTGGCCCTTATATCGACCCCCTATCCCTCATCAAACCTCGAGAAGTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
11459727 CCCTTGAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAAGATTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGG
* *
11459792 GACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGTTGAATTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * *
11459857 ATGCCAACAAAAAAATAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTCTCAAAAAAATT
391 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
* * *
11459922 TTAAAAAAATCTCAAACTGTAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAACGAGTCGTTTTGC
456 TT-AAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
11459987 TATGAACCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
11460052 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
585 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
* * * * * * *
11460117 TCCCGTCTCTCTGGCTGG-TGTACTGCCCGCCCACCCACCCGCCCGCTCGTTTCGTCGGTTGGGT
650 TCCCGTCTCTCTGGCCGGATGTGCCGCCCGCCCGCCC-CCCG--CGCTCGTTTCATCAGTTGGCT
* * * *
11460181 TGGGCATACGAAGTTCATTCCCAGTCTAAGATCCA-ACCAGACTGAGGATTGCAGCAGCAGGATT
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCAGACTGAGGGTT-CGGCAGCAGGATT
* * * *
11460245 GGTAGCACGTAGAGAAGGACCTGGA-CGATCCCCGACTTGCGCATCCCACCACTCTGGCCGGCTG
775 GGTAGCACGTAGAGGAGGACC-CGATCGATCCCCGACTTGCGCATACCACCCCTCTGGCCGGCTG
**
11460309 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
839 AGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * *
11460371 ATACGGAGTTCATTCCCAGTCTAATATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCACATGCTGGGCT
* * ** * * * *
11460436 TGGGCATGTGCTGATGCCTTATTTTTCTTCACCGACGCACCATCACCGGATCATCACCGGAGAAC
66 TGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAGAAC
* * * *
11460501 CTGAACGGCGGCAATGGGGTTCCGACGATCAGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCA
131 CTGACCGACGGCATTGGGGTTCCGACGATCAG-GGGGTCGGGGGGGTGTGCGCACATGATGTGCA
**
11460566 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATGC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
11460631 CCCCTTAATGAGCATTTGAGATTTTACAAGATTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAAGATTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGG
* *
11460696 GGACACTTTTTTCATATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
11460761 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* *
11460826 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
455 TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
11460891 GATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
11460956 GCCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
585 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
* *
11461021 TCCCGTCTCTTTGGCCGGCATAGTGGCCGCCCGCTTGCCCGCCCGCCCGCTTGCTCATTTCATCA
650 TCCCGTCTCTCTGGCCGG-AT-GT-GCCG-CC-C--GCCCGCCC-CCCGC--GCTCGTTTCATCA
* * *
11461086 GTTAGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATTAGACCAGA-TCGAGGGTTACGGCAG
705 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTT-CGGCAG
* ** * * *
11461150 CAGGATCGACAGCACATAGAGGAGGACCCGATCGATCCCCGACTTACGCATACCGCCCCTCTGGC
768 CAGGATTGGTAGCACGTAGAGGAGGACCCGATCGATCCCCGACTTGCGCATACCACCCCTCTGGC
* * * * *
11461215 TGGCTGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTGAGGCATACGAAGTTCATTCCCAGTCTA
833 CGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
11461280 AGC
898 AGC
* * **
11461283 ATACGGAGTTCATTGCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGACAGCACAAGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCAC-A--T--GC-
* * * *
11461348 TGGGCTTGGGCATGTGCTGGTGCCGGATTTTCCTTCGTCGAGGCACCATCGTCGGAGCATCGTCG
60 TGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCG
* * * *
11461413 GAGAACCTGACCGACTGCATTGGGGTTCTGGCAATCGAGGGGGTC-GGGGGGTGTGCGCACATGA
125 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGGTCGGGGGGGTGTGCGCACATGA
* * *
11461477 TGTGCAATGGGTGCTGGTTCTTGGCCCTTATATGGGCCCCCTATCCC-CTATCAAACCTTGAGAA
189 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAA
* * * * *
11461541 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTTT
253 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGATTGCTGCCAGCAGCCATTAAAGTGTCT
*
11461606 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
318 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
11461671 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTTCCG
383 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * *
11461736 AAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATATACAACGAGTT
448 AAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
11461801 GTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
11461866 TGGCATTGGCACGCAGAAATATAAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
578 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
11461931 TTGCACATCCCGTATCTCTGGCCGGACTGTAGCCGCCCGCCCG-CCCCTGC-CTCGTTTCTTCAG
643 TTGCACATCCCGTCTCTCTGGCCGGA-TGT-GCCGCCCGCCCGCCCCCCGCGCTCGTTTCATCAG
* * * * *
11461994 TTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGGATCGGACTGAAGGTT-GTGCA-CA
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTCG-GCAGCA
* *
11462057 GGATTGGTAGCACGTAGAGGGGGACCCGATCGATCCCC-ACCTTGCGTA-ACCCACCCCTCTGGC
770 GGATTGGTAGCACGTAGAGGAGGACCCGATCGATCCCCGA-CTTGCGCATA-CCACCCCTCTGGC
*
11462120 CGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTA
833 CGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
11462185 AGC
898 AGC
* * * * *
11462188 ATATGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCACATGCTGGGCT
* * * * * * *
11462253 CGGGCATGTGTTGGTGCTGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCAGATAAC
66 TGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAGAAC
* * *
11462318 CTGACCGACGGCATTGGTGTTCC--C-AT-----GATCGGGGGGGTGTGCGCACATGATGTGCGA
131 CTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCAA
*
11462375 TGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
11462440 CCCTTAAAGAGCATTTGAGATTTTACAAGATTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAAGATTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGG
* *
11462505 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
11462570 ATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
391 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
11462613 AAACGAGTCG
Statistics
Matches: 1996, Mismatches: 216, Indels: 72
0.87 0.09 0.03
Matches are distributed among these distances:
890 3 0.00
891 248 0.12
892 1 0.00
896 2 0.00
897 1 0.00
899 80 0.04
900 2 0.00
902 1 0.00
903 138 0.07
904 205 0.10
905 426 0.21
906 4 0.00
907 59 0.03
908 3 0.00
909 2 0.00
910 6 0.00
911 6 0.00
912 238 0.12
913 1 0.00
914 1 0.00
915 3 0.00
916 8 0.00
917 469 0.23
918 87 0.04
919 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCACATGCTGGGCT
TGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCAA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAAGATTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
TTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
CCCGTCTCTCTGGCCGGATGTGCCGCCCGCCCGCCCCCCGCGCTCGTTTCATCAGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTCGGCAGCAGGATTGGTAGC
ACGTAGAGGAGGACCCGATCGATCCCCGACTTGCGCATACCACCCCTCTGGCCGGCTGAGCACCC
GCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
Found at i:11463018 original size:26 final size:26
Alignment explanation
Indices: 11462982--11463032 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11462972 GTTGACTTAG
11462982 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
11463008 GCATATGGAGTTCATTCCCCGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
11463033 CGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11463889 original size:26 final size:26
Alignment explanation
Indices: 11463860--11463912 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11463850 GTTGACTTAG
11463860 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
11463886 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11463912 G
1 G
11463913 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11464756 original size:26 final size:26
Alignment explanation
Indices: 11464718--11464771 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
11464708 GGGTTGACTT
*
11464718 AGCATACGAAGTTCATTCCTAGTCTA
1 AGCATACGAAGTTCATTCCCAGTCTA
* *
11464744 AGCATATGGAGTTCATTCCCAGTCTA
1 AGCATACGAAGTTCATTCCCAGTCTA
11464770 AG
1 AG
11464772 AGCAGACCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (26 bp):
AGCATACGAAGTTCATTCCCAGTCTA
Found at i:11465078 original size:854 final size:836
Alignment explanation
Indices: 11463442--11465138 Score: 2296
Period size: 854 Copynumber: 2.0 Consensus size: 836
11463432 CCAAGTTTGG
** *
11463442 GGCCAAAACTCCTTTTGAAAAAATTTTTAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGA
1 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGA
*
11463507 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAA
66 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAA
* * **
11463572 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACTCACCTACCA
131 TTTACAAACCATAAAAATGGCATTAGCACACAGAAATATAAAGATGTGCCTAAACTCACCTACCA
* *
11463637 CCCTATCCCGTCTCTTTGGCTGGCATAGTACTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
196 CCCTATCCCGTCTCTTTGGCCGGCATAGTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* *
11463702 CATACGGAGTTCATTCCCAGTGTAAGATCCGATCAGACTGAGGGTTGCGGCAAAAGGATCGGCAG
261 CATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACTAAGGGTTGCGG-AAAAGGATCGGCAG
** * **
11463767 CACATGGAGGAGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCTTCTGGCCAGCTGAGTGCC
325 CACACAGAGGAGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACC
*
11463832 CGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGT
390 CGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGT
* * * * **
11463897 TCATTCTCAGTCTAAGATCGGACCGGTGCAAGGGTTGCAGCAGCACATGCTAAGCTCGAGCATGT
455 TCATTCCCAGTCTAAGAGCAGACCAGACCAAGGGTTG-AGCAGCACATGCTAAGCTCGAGCATGT
* * *
11463962 GCTGGTGCCGCATTTTTCTTTGTCGAGGCACCATCGTCGGAGCATCGCCAGAGAACCTGATCGAC
519 GCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGCCAGAGAACCTGACCGAC
* * *
11464027 GGCATTGGGGTTCCGACGATCGGAGAGGCCGGGGGGTGTGCGCAGATGTTGTGTGATGGGTGCTG
584 GGCATTGGGGTTCCGACGATCGGAGAGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
11464092 GTACTTGGCCCATATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACACTCCCTTAAAG
649 GTACTTGGCCCATATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCACACTCCCTTAAAG
* * *
11464157 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
714 AGCATTTGAGATTTTACAAGTTTACTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
11464222 TTCAAATGGTCACAAAATCTTGTACACGTT-GGGTTTTTAGCTGAATTTTTTTGTGCAT
779 TTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATGTTTTTGTGCAT
* *
11464280 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAGGTTTCAAAAATCGTGA
1 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGA
* *
11464345 AAAATAGAAAACGA-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAA
66 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAA
*
11464408 TTTACAAACCATAAAAATGGCATTAGCACACAGAAATATGAAGATGTGCCTAAAC-CTACCTACC
131 TTTACAAACCATAAAAATGGCATTAGCACACAGAAATATAAAGATGTGCCTAAACTC-ACCTACC
* * *
11464472 ACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCCTGCCC
195 ACCC--T--AT---C--C---CG--T--C-TCT-T-TGGCCGGCATAGTACCCG--C-CC-GCCC
* * *
11464537 GCCTACTCGTTTCGTCGGTT-GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGA
237 G----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGA
* * *
11464601 -TCAAGGGTTGCGG-TAAGGATCGGCAGCACACAGAGG-GTGTCCCGGTCGATCCCCGACTTGCG
298 CT-AAGGGTTGCGGAAAAGGATCGGCAGCACACAGAGGAG-GACCCGGCCGATCCCCGACTTGCG
* * *
11464663 CATCCCGCCCCTCTGGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTA-GCATACGA
361 CATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGA
* * *
11464727 AGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAGCAGACCAGACCAA-GGTT
426 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGCAGACCAGACCAAGGGTT
* ** * *
11464791 G-GCAGCTCATGCTGGGCTC-AGGCATGTGTTGGTGCCGTATTTTTCTTCG-CAGAGGCACCATC
491 GAGCAGCACATGCTAAGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GAGGCACCATC
* * * *
11464853 ATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGTCGGGGG
554 ATCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGAGGCCGGGGG
* ** *
11464917 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCTTCCTATCCCTTAT
619 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCAT
*
11464981 CAAACCTCAAGAACTCACAC-CCTCTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCAAGTAG
684 AAAACCTCAAGAACTCACACTCC-CTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCAAGTAG
*
11465045 CCATTAAAGTCG-CTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
748 CCATTAAAGT-GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
11465109 TTTTTAGCTGAATGTTTTTGTGCAT
812 TTTTTAGCTGAATGTTTTTGTGCAT
11465134 -GCCAA
1 GGCCAA
11465139 CAAAAATACA
Statistics
Matches: 753, Mismatches: 71, Indels: 55
0.86 0.08 0.06
Matches are distributed among these distances:
835 1 0.00
836 76 0.10
837 32 0.04
838 74 0.10
840 2 0.00
843 1 0.00
845 1 0.00
848 2 0.00
850 1 0.00
852 1 0.00
853 12 0.02
854 162 0.22
855 58 0.08
856 100 0.13
857 1 0.00
858 7 0.01
859 65 0.09
860 91 0.12
861 1 0.00
862 50 0.07
863 15 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (836 bp):
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAA
TTTACAAACCATAAAAATGGCATTAGCACACAGAAATATAAAGATGTGCCTAAACTCACCTACCA
CCCTATCCCGTCTCTTTGGCCGGCATAGTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACTAAGGGTTGCGGAAAAGGATCGGCAGC
ACACAGAGGAGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCC
GCACGCTCGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTT
CATTCCCAGTCTAAGAGCAGACCAGACCAAGGGTTGAGCAGCACATGCTAAGCTCGAGCATGTGC
TGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGCCAGAGAACCTGACCGACGG
CATTGGGGTTCCGACGATCGGAGAGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCATATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCACACTCCCTTAAAGAG
CATTTGAGATTTTACAAGTTTACTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAT
Found at i:11465333 original size:50 final size:50
Alignment explanation
Indices: 11465258--11465366 Score: 218
Period size: 50 Copynumber: 2.2 Consensus size: 50
11465248 GAGTCGTCTT
11465258 GCCATAAAACTTCACATGAAGGCTTAAGGGAGCATAGGATGAATTTACAA
1 GCCATAAAACTTCACATGAAGGCTTAAGGGAGCATAGGATGAATTTACAA
11465308 GCCATAAAACTTCACATGAAGGCTTAAGGGAGCATAGGATGAATTTACAA
1 GCCATAAAACTTCACATGAAGGCTTAAGGGAGCATAGGATGAATTTACAA
11465358 GCCATAAAA
1 GCCATAAAA
11465367 ATATCATTCA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 59 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (50 bp):
GCCATAAAACTTCACATGAAGGCTTAAGGGAGCATAGGATGAATTTACAA
Found at i:11466190 original size:26 final size:26
Alignment explanation
Indices: 11466154--11466203 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11466144 CTTAGGCAAG
11466154 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
11466180 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
11466204 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:11467080 original size:26 final size:26
Alignment explanation
Indices: 11467051--11467103 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11467041 GTTGACTTAG
11467051 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
*
11467077 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
11467103 G
1 G
11467104 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:11468881 original size:26 final size:26
Alignment explanation
Indices: 11468845--11468897 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11468835 TTTGACTTAT
*
11468845 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
11468871 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
11468897 G
1 G
11468898 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:11471558 original size:26 final size:26
Alignment explanation
Indices: 11471508--11471560 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11471498 TTTGACTTAT
* **
11471508 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11471534 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11471560 G
1 G
11471561 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11471873 original size:901 final size:908
Alignment explanation
Indices: 11470630--11472438 Score: 2641
Period size: 901 Copynumber: 2.0 Consensus size: 908
11470620 GTTGACTTAG
* * * *
11470630 GCATACGGAGTTCATTCCCAGTGTAGGATCAGACCGGACCGAGGGTTTCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTAGG
* ** * * * *
11470695 CTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCACCGCCGAAGCATCATCGGAGA
* ** * * **
11470760 ACCTTACCGGTGGCAATGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGAGCGCACAAGATATG
131 ACCTGACCGACGGCAATGAGGTTCCGGCGATCGGAGGCACCGGGGGGGTGAGCGCACAAGATATG
*
11470825 CGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCAC
*
11470890 ACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
11470955 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA-TGTTTTT
326 GGGAACACTTTTTTCAAATGGTCACAAAATCTTGGACACTTCGAATTTTGAGCTAAATTG-TTTT
* * *
11471019 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACACCTTCCAAAAA
390 GTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACACCTTCCAAAAA
** *
11471084 AATTTTAAAAAATCCTTAACCGTAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
455 AATTTTAAAAAATCCCGAACCATAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
*
11471149 TGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAATCATAAAAATGG
520 TGCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGG
*
11471213 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTG
585 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCATG
* **
11471278 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-C-CC-ACCCACTCGTTTCGTTGG
650 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCTCCTACCCACTCGTTTCGTCAG
* * * *
11471340 TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGATCAAGGGTTACGACAGTA
715 TTGGCGTAGGCATACAGAGTTCATTCCCAATCTAAGATTAGACCAGACCAAGGGTTACGACAGCA
* * * *
11471405 GGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCA-TCTCGCCCCT-TCGAT
780 AGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCACACCCT-GCCCCTCT-GAC
* * * *
11471468 CGGCTGAGCACCCGCACACT-TATTTCGTGGTTTGACTTATGCATATGGAGTTCATTCCCTGTCT
843 CGGCTGAGCACCCGCACACTCT-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
11471532 AA
907 AA
* * ** *
11471534 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTACGGTAGC-CATGCTTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTAGG
* *
11471598 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCACCGCCGAAGCATCATTGGAGA
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCACCGCCGAAGCATCATCGGAGA
* * * * *
11471663 ACCTGACCGACGGCATTGAGGTTCCGGCGAT-GGAGGCACC-GGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGACGGCAATGAGGTTCCGGCGATCGGAGGCACCGGGGGGGTGAGCGCACAAGATATG
* * *
11471726 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAAGTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCAC
* *
11471791 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTGAAAT
261 ACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11471856 GGGAACACTTTTTTCAAATGGTCACAAAATCTTGGACACTTCGAATTTTGAGCTGAATTGTTTTG
326 GGGAACACTTTTTTCAAATGGTCACAAAATCTTGGACACTTCGAATTTTGAGCTAAATTGTTTTG
* ** **
11471921 TGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAGAATTCCTTCTGAAAAA
391 TGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACACCTTCCAAAAAA
* * * *
11471986 ATTTTTAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCATAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
*
11472051 GCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
521 GCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGC
* * *
11472116 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCATGC
586 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCATGC
* * *
11472181 GCATCCCGTCTCTTTGGCCGGCATAGTGCTCGCCCGCCCGCCCTCCTACCCGCTCGTTTCGTCAG
651 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCG-CCTCCTACCCACTCGTTTCGTCAG
* * * **
11472246 TTGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGTAGCA
715 TTGGCGTAGGCATACAGAGTTCATTCCCAATCTAAGATTAGACCAGACCAAGGGTTACGACAGCA
* * ** * * *
11472311 AGATCGGCAGCATGTAGAGGGGGACCTGATCGATCCTCGGCTTGCACACCCTGCCCCTCTGGCCG
780 AGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCACACCCTGCCCCTCTGACCG
* *
11472376 GCTGAGCACCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTA
845 GCTGAGCACCCGCACACTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
11472439 GGATCAGACC
Statistics
Matches: 801, Mismatches: 95, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
901 332 0.41
902 150 0.19
903 90 0.11
904 48 0.06
905 2 0.00
906 175 0.22
907 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (908 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTAGG
CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCACCGCCGAAGCATCATCGGAGA
ACCTGACCGACGGCAATGAGGTTCCGGCGATCGGAGGCACCGGGGGGGTGAGCGCACAAGATATG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCAC
ACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGAACACTTTTTTCAAATGGTCACAAAATCTTGGACACTTCGAATTTTGAGCTAAATTGTTTTG
TGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACACCTTCCAAAAAA
ATTTTAAAAAATCCCGAACCATAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
GCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGC
ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCATGC
GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCTCCTACCCACTCGTTTCGTCAGT
TGGCGTAGGCATACAGAGTTCATTCCCAATCTAAGATTAGACCAGACCAAGGGTTACGACAGCAA
GATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCACACCCTGCCCCTCTGACCGG
CTGAGCACCCGCACACTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11473494 original size:26 final size:27
Alignment explanation
Indices: 11473446--11473499 Score: 101
Period size: 26 Copynumber: 2.0 Consensus size: 27
11473436 CCAATTCGAT
11473446 CTTAGACTGGGAAATGAACTCCGTATG
1 CTTAGACTGGGAAATGAACTCCGTATG
11473473 CTTAGACTGGG-AATGAACTCCGTATG
1 CTTAGACTGGGAAATGAACTCCGTATG
11473499 C
1 C
11473500 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGAAATGAACTCCGTATG
Found at i:11474377 original size:26 final size:26
Alignment explanation
Indices: 11474341--11474393 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11474331 CCAGTCCAAT
*
11474341 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11474367 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11474393 C
1 C
11474394 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11476815 original size:26 final size:27
Alignment explanation
Indices: 11476786--11476843 Score: 86
Period size: 26 Copynumber: 2.2 Consensus size: 27
11476776 TTGACTTAGG
11476786 GCATACGGAG-TCA-TTCCCAGGTCTAA
1 GCATACGGAGTTCATTTCCCA-GTCTAA
11476812 GCATACGGAGTTCATTTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
11476839 G-ATAC
1 GCATAC
11476844 AGATCAGACG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 14 0.47
27 10 0.33
28 6 0.20
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCATTTCCCAGTCTAA
Found at i:11477730 original size:26 final size:26
Alignment explanation
Indices: 11477700--11477750 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11477690 TGACTAAGGG
*
11477700 ATACGGAGTTGACTCCCAGTCTAAGC
1 ATACGGAGTTCACTCCCAGTCTAAGC
*
11477726 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCACTCCCAGTCTAAG
11477751 ACTGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCACTCCCAGTCTAAGC
Found at i:11479369 original size:26 final size:26
Alignment explanation
Indices: 11479333--11479382 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11479323 GACTTAGGCT
*
11479333 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
11479359 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
11479383 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:11479685 original size:890 final size:889
Alignment explanation
Indices: 11477966--11479785 Score: 2815
Period size: 890 Copynumber: 2.0 Consensus size: 889
11477956 TATCCCTCAT
* * * * *
11477966 CAAAAATACAAGGATCACGTCTACCGAGTTTGCGACCAAAACTCCTTCCAAAAAATTTTAAAAAA
1 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCAAAAAATTTTAAAAAA
** * * * *
11478031 TCTTGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACT
66 TCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
* *
11478096 TCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAG
131 TCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAG
* ** * *
11478161 AAATATGATGATGTGCCTAAACCCACCTACCACCATATCGTTCCACGGCTTGCGCATCCCGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCATATCAATCCACGGCTTGCGCATCCCATATC
* * * * * * *
11478226 TCTAGTCGGCGTAGTGTTCGCCCGCCCGCCCGCCCGTTCGTTTCGTTGGTTGGCTTAGGCGTACG
261 TCTAGCCGACGTAG-G-TCGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * **
11478291 GAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGTAGGATCGGCAACACGTA
324 GAGCTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGTAGGATCGGCAACACGTA
* * **
11478356 GAAGGGGACCCGGCTGATCCCCGGCTTACGCATCCTGCCCCCTGGCCAGCTGAGCCCCGCACGTT
389 GAAGGGGACCCGGCTGATCCCCAGCTTACGCAACCCACCCCCTGGCCAGCTGAGCCCCGCACGTT
* * *
11478421 CGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCC
454 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCC
* * **
11478486 AGTCTAAGATCGGATCGGACCGAGCGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGC
519 AGTCTAAGATCGGACCGAACCGAGCGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGC
* * * *
11478551 CTTCTTTTTCTTCGTTGGGGCTCCATCGCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGG
584 CGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGG
11478616 CGTTCCAGCGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCATTATAT
649 CGTTCCAGCGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCATTATAT
11478681 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
714 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
11478746 AAGATTGCTGCCAGTAGCCACTAAAGTGTCTGGAATCGGGACACTTTTTTCAAATGGTCACAAAA
779 AAGATTGCTGCCAGTAGCCACTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGGTCACAAAA
* *
11478811 TCTTGTACACTTCGAGTTTTTGGCTGAATGTTTTTGTG-ATGCCAA
844 TCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAA
* *
11478856 CAAAAATACAAGGATCACGTCTACCAAGTTCGGGGGAAAAAATCCTTCCAAAAAAATTTTAAAAA
1 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCC-AAAAAATTTTAAAAA
*
11478921 ATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAAC
65 ATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* *
11478986 TTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCA
130 TTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCA
* * *
11479051 GAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCTCATAT
195 GAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCAATCCACGGCTTGCGCATCCCATAT
* * *
11479116 CTCTGGCCGACGTA-G-CGCTCGCCCGCCCACCTGCTCGTTTCATCGGTTGGCTTAGGCATACGG
260 CTCTAGCCGACGTAGGTCGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * * *
11479179 AGCTCATTCCCAGTCTAAGATCGAATC-GAGCTGAGGGTTGCGACAGTAGGATTGGTAGCACGTA
325 AGCTCATTCCCAGTCTAAGATCGAACCGGA-CCGAGGGTTGCGACAGTAGGATCGGCAACACGTA
* * * *
11479243 GAGGGGGACCCGG-TCGATCCCCAGCTTGCGTAACCCACCCCTCTGGCCGGCTGAGCACCCGCAC
389 GAAGGGGACCCGGCT-GATCCCCAGCTTACGCAACCCACCCC-CTGGCCAGCTGAGC-CCCGCAC
* *
11479307 GCTT-GTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
451 G-TTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
*
11479371 TCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTG
515 TCCCAGTCTAAGATCGGACCGAACCGAGCGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTG
11479436 GTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCA
580 GTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCA
* * * *
11479501 TTGGTGTTCCCGTGATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCAT
645 TTGGCGTTCCAGCGATC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCAT
*
11479566 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
709 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
11479631 TTTACAAGATTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
774 TTTACAAGATTGCTGCCAGTAGCCACTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGGTCA
11479696 CAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAA
839 CAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAA
*
11479747 TAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAA
1 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAA
11479786 CGAGTCGTCT
Statistics
Matches: 842, Mismatches: 80, Indels: 15
0.90 0.09 0.02
Matches are distributed among these distances:
886 3 0.00
887 125 0.15
888 13 0.02
889 199 0.24
890 257 0.31
891 245 0.29
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCAAAAAATTTTAAAAAA
TCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCATATCAATCCACGGCTTGCGCATCCCATATC
TCTAGCCGACGTAGGTCGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
GCTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGTAGGATCGGCAACACGTAGA
AGGGGACCCGGCTGATCCCCAGCTTACGCAACCCACCCCCTGGCCAGCTGAGCCCCGCACGTTCG
TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
TCTAAGATCGGACCGAACCGAGCGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG
TATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGCG
TTCCAGCGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCATTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAA
GATTGCTGCCAGTAGCCACTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAA
Found at i:11480188 original size:26 final size:26
Alignment explanation
Indices: 11480152--11480202 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11480142 GTTGACTTAG
11480152 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
11480178 GCATATGGAGTTCATTCCCCGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
11480203 CGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11482027 original size:865 final size:836
Alignment explanation
Indices: 11480611--11482316 Score: 2305
Period size: 865 Copynumber: 2.0 Consensus size: 836
11480601 CCAAGTTTGG
*
11480611 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGA
1 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGA
*
11480676 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAA
66 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAA
* * **
11480741 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACTCACCTACCA
131 TTTACAAACCATAAAAATGGCATTAGCACACAGAAATATAAAGATGTGCCTAAACTCACCTACCA
*
11480806 CCCTATCCCGTCTCTTTGGCTGGCATAGTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
196 CCCTATCCCGTCTCTTTGGCCGGCATAGTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
11480871 CATACGGAGTTCATTCCCAGTGTAAGATCCGATCAGACTGAGGGTTGTGGCAAAAGGATCGGCAG
261 CATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACTAAGGGTTGCGACAAAAGGATCGGCAG
** * * * **
11480936 CACATGGAGGAGGACTCGGCCGATCCCCGACTTGCGCATCCCGCCCTTCTGGCCGGCTGAGTGCC
326 CACACAGAGGAGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACC
* *
11481001 CGTACGCTCGTTCCGTGGGTTGACTTAGGCACATGAAGTTCATTCCCAGTCTAAACATACGAAGT
391 CGCACGCTCGTTCCGTGGGTTGACTTAGGCACACGAAGTTCATTCCCAGTCTAAACATACGAAGT
* * * ** *
11481066 TCATTCTCAGTCTAAGATCGGACCGGTGCAAGGGTTGCAGCAGCACATGCTAAGCTTGAGCATGT
456 TCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTAAGCTAGAGCATGT
* * * *
11481131 GCTGGTGCCGCATTTTTCTTTGTTGAGGCACCATCGTCGGAGCATCGCCAGAGAACCTGATCGAC
521 GCTGGTGCCGCATTTTTCTTCGTAGAGGCACCATCATCGGAGCATCGCCAGAGAACCTGACCGAC
* * *
11481196 AGCATTGGGGTTCCGGCGATCGGAGGG-GCCGGGGGGTGTGCGCAGATGTTGTGTC-ATGGGTGC
586 AGCATTGGGGTTCCGACGATCGG-GGGAGCCGGGGGGTGTGCGCACATGATGTG-CAATGGGTGC
* *
11481259 TGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACACTCCCTTAA
649 TGGTACTT-GCCCATATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCACACCCCCTTAA
* * *
11481324 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GTCTGAAATGGGGACACT
713 AGAGCATTTGAGATTTTACAAGTTTACTGCAAGTAGCCATTAAAGTCG-CTGAAATGGGGACACT
* *
11481388 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAAT-TTTTTTGTGCAT
777 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-GAATGTTTTGTG-GCAT
* *
11481449 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACTGTAAAAGGTTTCAAAAATCATGA
1 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGA
* *
11481514 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
66 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAA
*
11481579 TTTACAAACCATAAAAATGGCATTAGCACACAGAAATATGAAGATGTGCCTAAAC-CTACCTACC
131 TTTACAAACCATAAAAATGGCATTAGCACACAGAAATATAAAGATGTGCCTAAACTC-ACCTACC
* * *
11481643 ACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCCTGCCC
195 ACCC--T--AT---C--C---CG--T--C-TCT-T-TGGCCGGCATAGTACCCG--C-CC-GCCC
* * *
11481708 GCCTACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGA
237 G----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGA
* * * *
11481773 -TCAAGGGTTGCGATAATAGGATCGGCAGCACACAGAGG-GTGTCCCGGTCGATCCCCGACTTGC
298 CT-AAGGGTTGCGACAAAAGGATCGGCAGCACACAGAGGAG-GACCCGGCCGATCCCCGACTTGC
* * * *
11481836 GCATTCCGCCCCTCTGGCCGGCTAAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
361 GCATCCCGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCACACG
* * * *
11481901 AAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
426 AAGTTCATTCCCAGTCTAAACATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
* * ** * *
11481966 TGCGGCAGCTCATGCTGGGCTCAG-GCATGTGTTGGTGCCGTATTTTTCTTCGTAGAGGCACCAT
491 TGCAGCAGCACATGCTAAGCT-AGAGCATGTGCTGGTGCCGCATTTTTCTTCGTAGAGGCACCAT
* * * *
11482030 CATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGAGTCGGGG
555 CATCGGAGCATCGCCAGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGAGCCGGGG
* ** *
11482095 GGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGCCCTTATATTGGCTTCCTATCCCTTAT
620 GGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGCCCATATATTGGCCCCCTATCCCTCAT
*
11482160 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCAAGTAGC
685 AAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCAAGTAGC
*
11482225 CATTAAAGTCGCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
750 CATTAAAGTCGCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
11482290 TTTAGCGAATGTTTTGTGGCAT
815 TTTAGCGAATGTTTTGTGGCAT
11482312 -GCCAA
1 GGCCAA
11482317 CAAAAATACA
Statistics
Matches: 754, Mismatches: 79, Indels: 46
0.86 0.09 0.05
Matches are distributed among these distances:
837 1 0.00
838 185 0.25
840 1 0.00
842 2 0.00
845 1 0.00
847 1 0.00
850 2 0.00
852 1 0.00
854 1 0.00
855 3 0.00
856 1 0.00
857 14 0.02
859 1 0.00
860 2 0.00
861 5 0.01
862 5 0.01
863 8 0.01
864 162 0.21
865 357 0.47
866 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (836 bp):
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAA
TTTACAAACCATAAAAATGGCATTAGCACACAGAAATATAAAGATGTGCCTAAACTCACCTACCA
CCCTATCCCGTCTCTTTGGCCGGCATAGTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACTAAGGGTTGCGACAAAAGGATCGGCAG
CACACAGAGGAGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACC
CGCACGCTCGTTCCGTGGGTTGACTTAGGCACACGAAGTTCATTCCCAGTCTAAACATACGAAGT
TCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTAAGCTAGAGCATGT
GCTGGTGCCGCATTTTTCTTCGTAGAGGCACCATCATCGGAGCATCGCCAGAGAACCTGACCGAC
AGCATTGGGGTTCCGACGATCGGGGGAGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTG
GTACTTGCCCATATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAAGTTTACTGCAAGTAGCCATTAAAGTCGCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGAATGTTTTGTGGCAT
Found at i:11482508 original size:48 final size:48
Alignment explanation
Indices: 11482442--11482539 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
11482432 CTTGCCATAA
* *
11482442 AACTTCACCTGAAGGCTTAAGGGAGCATAGGATGAATTTACAAGCCAT
1 AACTTCACATGAAGGCTTAAGGGAGCATAGAATGAATTTACAAGCCAT
11482490 AACTTCACATGAAGGCTTAAGGGAGCATAGAATGAATTTACAAGCCAT
1 AACTTCACATGAAGGCTTAAGGGAGCATAGAATGAATTTACAAGCCAT
11482538 AA
1 AA
11482540 AAATATCATT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.22
Consensus pattern (48 bp):
AACTTCACATGAAGGCTTAAGGGAGCATAGAATGAATTTACAAGCCAT
Found at i:11483345 original size:26 final size:26
Alignment explanation
Indices: 11483309--11483361 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11483299 GCTGACTTAG
*
11483309 GCATGCGGAGTTCATTC-CTAGTCTAA
1 GCATACGGAGTTCATTCTC-AGTCTAA
11483335 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
11483361 G
1 G
11483362 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:11484246 original size:26 final size:26
Alignment explanation
Indices: 11484210--11484262 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11484200 GTTGACTTAG
11484210 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11484236 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11484262 G
1 G
11484263 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11486047 original size:26 final size:26
Alignment explanation
Indices: 11486011--11486061 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11486001 TTTGACTTAT
* *
11486011 GCATATGGAGTTCATTCCCTGTCTAG
1 GCATACGGAGTTCATTCCCAGTCTAG
11486037 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
11486062 AGATCGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAG
Found at i:11486711 original size:901 final size:901
Alignment explanation
Indices: 11483124--11489748 Score: 8381
Period size: 902 Copynumber: 7.4 Consensus size: 901
11483114 CCACCTCCCA
* * * * *
11483124 CCCGCTCGTTTTGTCGGTTGGCTTAGGCATGCGGAATTCATTCCCATTCTAAGATCAGACTAGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * *
11483189 CGAGGGTTGA-GGTAGCAAGATCGGTAGCATGCAGAGGGGGACCC-GACTGATCC-CTGACTTGC
66 TGAGGGTT-ACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCAGTC-GATCCTC-GGCTTGC
* * * * * * * * * * *
11483251 GCATCCCACCCTTTTGGCCGGTTGAGCGCTCGCACGCTCGTTTTGTGGGCTGACTTAGGCATGCG
128 GCA-CCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACG
* * * *
11483316 GAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGA-TCAGACCGAAGG
192 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGG
* * * * **
11483380 TTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
256 TTGTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT
* * * * *
11483445 TG-TCGGAGCAACGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG
321 CGCT-GGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCGCCGGG
*
11483509 GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
385 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * * *
11483574 ATCAAACCTTGTGAACTCACATCACCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTA
450 ATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
11483639 GCCATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AG
515 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-
* *
11483703 GTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAA-GATCACGTCTACCAAGTTTGGGG
579 ATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * *
11483767 CTAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAGGTTTCCAAAATCGTGAAA
644 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
* *
11483832 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
709 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
11483897 TACAAGCCATAAAAATGGCATTGGAAAACAGAAATATAAAGATGTGCCTAAACCCACCTACCATC
774 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
11483962 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCACCCG
839 CTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * * * * **
11484025 CCCGCTCGTTCCGTCGGTTGTCTTAGGCATACGGAGTTCATTTCTAGTCCAAGATTGGACCAGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* ** * * *
11484090 TAAGGGTTTA-GGTAGCAGGAT-GAGCAGCACGTAGAGGGGGACCTGGTGGATCCCCGGCTTGAG
66 TGAGGG-TTACGGTAGCAGGATCG-GCAGCACGTAGAGGGGGACCCAGTCGATCCTCGGCTTGCG
* * * * *
11484153 CATCCCACCCCTCTAGCTGGCTGAG-AGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
129 CA-CCCGCCCCTCTGGCCGGCTGAGCA-CCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACG
* *
11484217 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCAAGGG
192 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGG
* * * * * *
11484281 TTGTGACCGCAC--GCTGGGCTCTGGCATGTGGTAGTGCCGTATTTTTCTTCGTCGGGGCACAAT
256 TTGTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT
* * * ** * **
11484344 CGTTTGAGCATCGTCGAAGAACCTGATTGGTGGCATTTGGGTTCCAACGATCGGGGG-GCCGGGG
321 CGCTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCGCC-GGG
* * * *
11484408 GGGTGTGCGCAGATGAAGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTT
385 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
11484473 ATCAAACCTCGAGAACTCACACCCCCATAAAAAGAATTTGAGATTTTACAGGTTTGTTGCCAGTA
450 ATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
11484538 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-A
515 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAA
* * *
11484602 GTTT-G-T-AA---TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGC
580 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * ** *
11484661 CAAAACGCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAA
645 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
11484726 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
710 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
11484791 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACTACCC
775 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
11484856 TATCAATCCACGGCTTGCGCAACCCATCT-TTCTGGCCGGCGTGGTGCCCGCCCGACCGTCCGCC
840 TATCGATCCACGGCTTGCGCATCCCGTCTCTT-TGGCCGGCGTAGTGCCCGCCCG--C--CCGCC
11484920 CG
900 CG
*
11484922 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * * * * *
11484987 CGAAGGTTATGGCAGCAGGATCGGTAGTACGTAGAGTGAGACCC-GACCGATCCTCGGCTTGCAC
66 TGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCAG-TCGATCCTCGGCTTGCGC
* ** *
11485051 ATCCCACCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
130 A-CCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
11485116 GTTCATTCCCAGTCTAAGCGTATGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTTG
194 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTG
*
11485181 TGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCG-CTGGGGCACCATCG
259 TGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTC-GGGGCACCATCG
* * * * * *
11485245 CTGGAGTATTGTCGGAGAACCTGATCGGTGGCAATGGGGTTCCAGCGATCGGGGGGGCCGGGGGG
323 CTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCGCC-GGGGG
* * ** *
11485310 GTGAGCGCACATGATATGTAATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
387 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
11485375 CAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGC
452 CAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
11485440 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
517 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-AT
* *
11485505 TTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCC
581 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* ** * *
11485570 AAAACACCTTCCGAAAAAATTTTAAAAAAATCCTTAACCGTAAAAAGTTTCGAAAATCGTGAAAA
646 AAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
11485635 ATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
710 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*** * * *
11485700 ACAAATTATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACTTACCACCC
775 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
11485765 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCA
840 TATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * * * * * * * * *
11485827 CTCGTTCGTTTTGTCGGTTGGCTTATGCATATGGAGTTCTTTTCCAATCTAAGATCAGGCCAGAT
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * *
11485892 TGAGGGTTACGATAGTAGCATCGGCA-CACGTAGAGGGGGACCCAGCCGATCCCCGACTTGCTCA
66 TGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCAGTCGATCCTCGGCTTGCGCA
* * * * *
11485956 TTCCGCCCCT-TCGGCCGGCTGAGCACCCGCACACTTATTT-GATGGTTTGACTTATGCATATGG
131 -CCCGCCCCTCT-GGCCGGCTGAGCACCCGCACACTTGTTTCG-TGGGTTGACTTAGGCATACGG
* * * *
11486019 AGTTCATTCCCTGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTT
193 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
** * * *
11486084 ACGGCAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
258 GTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG
* * * ** * * * **
11486149 CCGGAGCATCATTGGAGAACCTGACCGACGGCATTGAGGTTCCGGTGAT-GGAGGCATCGGGGGG
323 CTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCGCCGGGGGG
* *
11486213 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCTCTATCCCTCATC
388 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
11486278 AAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
453 AAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
11486343 ATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTT
518 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTT
* * * * *
11486408 TAGCTGAATGTTTTTATGCATACCAGCAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAA
583 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
11486473 AACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
648 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
11486538 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATGAATTTAC
713 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTAC
* *
11486603 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTA
777 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
11486668 TCGATCCACGACATGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCTCGCCCGCCCTCCCG
842 TCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * * *
11486728 CCCGCTCGTTTCGTCAGTTGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * *
11486793 CGAGGGTTGCGGTAGCAAGATCGGCAGCATGCAGAGGGGGACCC-GATCGATCCTTGGCTTGCGC
66 TGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCAG-TCGATCCTCGGCTTGCGC
* ** * * *
11486857 ACCCTGCCCCTCTGGTCGGCTGAGCAGTCGCACCCTCGCTTCGTGGGTTGACTTAGGCATACGGA
130 ACCC-GCCCCTCTGGCCGGCTGAGCACCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACGGA
* *
11486922 GTTCATTCCCAG--T---C-TA--G-G---------A-TC--AGACCAGAC----CC-AGGGTTT
194 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTG
11486961 TGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGC
259 TGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGC
* * * * *
11487026 TGGAGCATCGTCGGAGAACCTGATCGGTGACAATGGGGTTCCGGTGATCGGGGGGGCCGGGGGGT
324 TGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCGCCGGGGGGT
* *
11487091 GTGCGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCA
389 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
11487156 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
454 AACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
11487221 TTAAAGTGTCTAAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTT
519 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAA-TTT
* * **
11487286 TAGCTGAATTTTTTTTTGCATACCAACAAAAATACAAGGATCACGTCTAATAAGTTTGGGGCCAA
583 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
11487351 AACTCATTCCGAAAAAATTTTAAAACATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
648 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* *
11487416 GAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATCAATTTAC
713 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTAC
* *
11487481 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTA
777 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
11487546 TCGATCCACGGCGTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCACCCGCCCGCCCTCCCG
842 TCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCG
* * * *
11487610 CTCGCTCGTTTCATCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * ** * * * *
11487675 TGAGGGTTGCAGTAGCAGGATCGATAGCATGCAGAGGGGGACCCAGTCGATCCTCGGTTTACGCA
66 TGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCAGTCGATCCTCGGCTTGCGCA
* * * * *
11487740 CCCTACCCCTCTGGCCAGCAGAGCACCCGCACA-TTCGTTTCATGGGTTGACTTAGGCATACGAA
131 CCC-GCCCCTCTGGCCGGCTGAGCACCCGCACACTT-GTTTCGTGGGTTGACTTAGGCATACGGA
*
11487804 GTTCATTCCCAG--T--G--TA--G-G---------A-TC--AGATC--A---GACCGAGGGTTC
194 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTG
* * *
11487843 CGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGC
259 TGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGC
*
11487908 TGGAGCATCGTCGGAGAACCTGACCGGTGGCAATGGGGTTCCGGCGATCGGGGG-GCCGGGGGGT
324 TGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCGCCGGGGGGT
* * * *
11487972 GAGCGCACAAGATATGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
389 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
11488037 AACATCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCA
454 AACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
11488102 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTT
519 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-ATTT
* *
11488167 TAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAA
583 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * **
11488232 AACACCTTCCAAAAAAATTTTAAAAAATCCTTAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
648 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
11488297 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
713 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** *
11488362 AATCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTAT
778 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
11488427 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCA
843 CGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * * *
11488486 CCCACTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGA-
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* ** * * ** *
11488550 TCAAGGGTTACGACAGTAGGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGC
66 T-GAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCAGTCGATCCTCGGCTTGCGC
* ** * * *
11488615 ATCTCGCCCCT-TCGATCGGCTGAGCACCCGCACACTTGTTTCGTGGTTTGACTTATGCATATGG
130 A-CCCGCCCCTCT-GGCCGGCTGAGCACCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACGG
* * *
11488679 AGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTT
193 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
** * * ** *
11488744 ACGGCAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCACCG
258 GTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG
* * ** * * * *
11488809 -TCGGAGCATCATTGGAGAACCTGACCGACGGCATTGAGGTTCTGGCGAT-GGAGGCACCGGGGG
323 CT-GGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCGCCGGGGG
* *
11488872 GTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCAT
387 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
11488937 CAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGC
452 CAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
11489002 CATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAATT
517 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATT
* * *
11489066 TTGAGCTGAATTTTTTTGTGCATACCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGAGCC
582 TT-AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * ** * * *
11489131 AGAATTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTAAAAAATCATAAAAAA
646 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
11489196 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATGAATTT
711 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTT
* *
11489261 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACGACCC
775 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
11489326 TATCGATCCACGGCATGCGCATCCCGTCTCTTTGGTCGACATAGTGCTCGCCTGCCCACCCTCCT
840 TATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCCC
*
11489391 A
901 G
* * * * **
11489392 CCCGCTCATTTCGTCAGTTGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * *
11489457 TAAGGGTTGCGGTAGCAAGATCGGCAGCATGTAGAGGGGGA-CCTGATCGATCCTCGGCTTGCAC
66 TGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCAG-TCGATCCTCGGCTTGCGC
*
11489521 ACCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCT-TTTCGTGGGTTGACTTAGGCATACGG
130 ACCC-GCCCCTCTGGCCGGCTGAGCACCCGCACACT-TGTTTCGTGGGTTGACTTAGGCATACGG
*
11489585 AGTTCATTCCCAGTCT-AGGAT-C--AG---A----C---C--AGA-C---C--G---G-GGGTT
193 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
* * *
11489624 GTGACAACACATTCTTGGCTCGGGCGTGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG
258 GTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG
* * *
11489689 CTGGAGCATCGTCGGAGAACCTGACCGGTGACAATGGGGTTCCGGTGATCAGGGGG-GCCG
323 CTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATC-GGGGGCGCCG
11489749 TATGCCTAAG
Statistics
Matches: 5039, Mismatches: 583, Indels: 224
0.86 0.10 0.04
Matches are distributed among these distances:
875 2 0.00
876 282 0.06
877 199 0.04
878 293 0.06
880 230 0.05
881 355 0.07
882 329 0.07
883 3 0.00
884 3 0.00
885 1 0.00
886 1 0.00
889 1 0.00
890 3 0.00
892 26 0.01
893 248 0.05
894 2 0.00
895 6 0.00
896 7 0.00
897 238 0.05
898 9 0.00
899 366 0.07
900 268 0.05
901 680 0.13
902 686 0.14
903 10 0.00
904 235 0.05
905 94 0.02
906 179 0.04
907 4 0.00
908 72 0.01
909 206 0.04
910 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
TGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCAGTCGATCCTCGGCTTGCGCA
CCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTG
ACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTG
GAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCGCCGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
Found at i:11486910 original size:902 final size:902
Alignment explanation
Indices: 11483117--11489748 Score: 8461
Period size: 901 Copynumber: 7.4 Consensus size: 902
11483107 CCTAAACCCA
* * * *
11483117 CCTCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATGCGGAATTCATTCCCATTCTAAGATCAG
1 CCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * *
11483182 ACTAGACCGAGGGTTGAGGTAGCAAGATCGGTAGCATGCAGAGGGGGACCCGA-CTGATCCCTGA
66 ACCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGG
* * * * * * *
11483246 CTTGCGCATCCCACCCTTTTGGCCGGTTGAGCGCTCGCACGCTCGTTTTGTGGGCTGACTTAGGC
130 CTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
11483311 ATGCGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGA-TCAGACC
195 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACC
* * * * * **
11483375 GAAGGTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
259 GAGGGTTGTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGC
* * * * *
11483440 ACCATTG-TCGGAGCAACGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
324 ACCATCGCT-GGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCG
*
11483504 CCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
388 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * * *
11483569 CCCTCATCAAACCTTGTGAACTCACATCACCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGT
453 CCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
11483634 CAGTAGCCATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
518 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
11483699 TC-AGGTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAA-GATCACGTCTACCAAGTT
583 TCGA-ATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * *
11483762 TGGGGCTAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAGGTTTCCAAAATCG
647 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* *
11483827 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
712 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
11483892 GAATTTACAAGCCATAAAAATGGCATTGGAAAACAGAAATATAAAGATGTGCCTAAACCCACCTA
777 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
11483957 CCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGC
842 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGC
* * * * * * * **
11484018 CCACCCGCCCGCTCGTTCCGTCGGTTGTCTTAGGCATACGGAGTTCATTTCTAGTCCAAGATTGG
1 CCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** ** * * * * *
11484083 ACCAGACTAAGGGTTTAGGTAGCAGGAT-GAGCAGCACGTAGAGGGGGACCTGGTGGATCCCCGG
66 ACCAGACCGAGGGTTGCGGTAGCAAGATCG-GCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * *
11484147 CTTGAGCATCCCACCCCTCTAGCTGGCTGAG-AGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
130 CTTGCGCATCCCACCCCTCTGGCCGGCTGAGCA-CCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
11484211 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGAC
194 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGAC
* * * * * *
11484275 CAAGGGTTGTGACCGCAC--GCTGGGCTCTGGCATGTGGTAGTGCCGTATTTTTCTTCGTCGGGG
258 CGAGGGTTGTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGG
* * * * ** * **
11484338 CACAATCGTTTGAGCATCGTCGAAGAACCTGATTGGTGGCATTTGGGTTCCAACGATCGGGGG-G
323 CACCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCG
* * *
11484402 CCGGGGGGGTGTGCGCAGATGAAGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTA
388 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
11484467 TCCCTTATCAAACCTCGAGAACTCACACCCCCATAAAAAGAATTTGAGATTTTACAGGTTTGTTG
452 TCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTG
11484532 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
517 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
11484597 TTCG-AGTTT-G-T-AA---TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTT
582 TTCGAATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * ** *
11484655 TGGGGCCAAAACGCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCG
647 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
11484720 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
712 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
11484785 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTA
777 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
11484850 CTACCCTATCAATCCACGGCTTGCGCAACCCATCT-TTCTGGCCGGCGTGGTGCCCGCCCGACC
842 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTT-TGGCCGGCGTAGTGCCCGCCCG--C
* * *
11484913 GTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC
1 --CCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * * * * * * * *
11484978 AGACCAGACCGAAGGTTATGGCAGCAGGATCGGTAGTACGTAGAGTGAGACCCGACCGATCCTCG
64 AGACCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCG
* *
11485043 GCTTGCACATCCCACCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGG
129 GCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
11485108 CATACGGAGTTCATTCCCAGTCTAAGCGTATGGAGTTCATTCCCAGTCTAGGATCAGACCGGACC
194 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
*
11485173 GAGGGTTGTGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCG-CTGGGG
259 GAGGGTTGTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTC-GGGG
* * * * * *
11485237 CACCATCGCTGGAGTATTGTCGGAGAACCTGATCGGTGGCAATGGGGTTCCAGCGATCGGGGGGG
323 CACCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCG
* * ** *
11485302 CCGGGGGGGTGAGCGCACATGATATGTAATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTA
388 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
11485367 TCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGTTG
452 TCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTG
11485432 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
517 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
11485497 TTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGT
582 TTCGA-ATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* ** *
11485562 TTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAAATCCTTAACCGTAAAAAGTTTCGAAAAT
646 TTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
11485627 CGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
710 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*** * * *
11485692 ATGAATTTACAAATTATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACT
775 ATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACC
* *
11485757 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
840 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGC
* * * * * * * * *
11485820 CCGCCCACTCGTTCGTTTTGTCGGTTGGCTTATGCATATGGAGTTCTTTTCCAATCTAAGATCAG
1 CCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* ** * * * * *
11485885 GCCAGATTGAGGGTTACGATAG-TAGCATCGGCA-CACGTAGAGGGGGACCC-AGCCGATCCCCG
66 ACCAGACCGAGGGTTGCGGTAGCAAG-ATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCG
* * * * * ** *
11485947 ACTTGCTCATTCCGCCCCT-TCGGCCGGCTGAGCACCCGCACACTTATTT-GATGGTTTGACTTA
129 GCTTGCGCATCCCACCCCTCT-GGCCGGCTGAGCACCCGCACGCTCGTTTCG-TGGGTTGACTTA
* * * * *
11486010 TGCATATGGAGTTCATTCCCTGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA
192 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
* ** * * *
11486075 CTGAGGGTTACGGCAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGG
257 CCGAGGGTTGTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGG
* * * ** * * *
11486140 GCACCATCGCCGGAGCATCATTGGAGAACCTGACCGACGGCATTGAGGTTCCGGTGAT-GGAGGC
322 GCACCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGC
** * *
11486204 ATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCTCTA
387 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
11486269 TCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
452 TCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
11486334 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACAC
517 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
11486399 TTCGAATTTTAGCTGAATGTTTTTATGCATACCAGCAAAAATACAAGGATCACGCCTACCAAGTT
582 TTCGAATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* *
11486464 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCA
647 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
11486529 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTA
712 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTA
*
11486594 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
776 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
11486659 ACGACCCTATCGATCCACGACATGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCTCGCCCGC
841 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGC
* * * * *
11486721 CCTCCCGCCCGCTCGTTTCGTCAGTTGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAA
1 CCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* **
11486786 ACCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCTTGGC
66 ACCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
* * ** * *
11486851 TTGCGCA-CCCTGCCCCTCTGGTCGGCTGAGCAGTCGCACCCTCGCTTCGTGGGTTGACTTAGGC
131 TTGCGCATCCC-ACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
*
11486915 ATACGGAGTTCATTCCCAG--T---C-TA--G-G---------A-TC--AGACCAGAC----CC-
195 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
*
11486954 AGGGTTTTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCA
260 AGGGTTGTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCA
* * * * *
11487019 CCATCGCTGGAGCATCGTCGGAGAACCTGATCGGTGACAATGGGGTTCCGGTGATCGGGGGGGCC
325 CCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCGCC
*
11487084 GGGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
390 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
11487149 CTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
455 CTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
11487214 GTAGCCATTAAAGTGTCTAAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTC
520 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * **
11487279 AAATTTTTAGCTGAATTTTTTTTTGCATACCAACAAAAATACAAGGATCACGTCTAATAAGTTTG
585 GAA-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
11487344 GGGCCAAAACTCATTCCGAAAAAATTTTAAAACATCCCAAACCGCAAAAAGTTTCAAAAATCATG
649 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
11487409 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATC
714 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATG
*
11487474 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
778 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
11487539 GACCCTATCGATCCACGGCGTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCACCCGCCCGC
843 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTG----CCCGCCCGC
* * * *
11487603 CCTCCCGCTCGCTCGTTTCATCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
1 CCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * ** * *
11487668 ACCAAACTGAGGGTTGCAGTAGCAGGATCGATAGCATGCAGAGGGGGACCC-AGTCGATCCTCGG
66 ACCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGG
* * * * ** *
11487732 TTTACGCA-CCCTACCCCTCTGGCCAGCAGAGCACCCGCACATTCGTTTCATGGGTTGACTTAGG
130 CTTGCGCATCCC-ACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
11487796 CATACGAAGTTCATTCCCAG--T--G--TA--G-G---------A-TC--AGATC--A---GACC
194 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
** * *
11487835 GAGGGTTCCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGC
259 GAGGGTTGTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGC
*
11487900 ACCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTGGCAATGGGGTTCCGGCGATCGGGGG-GC
324 ACCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCGC
* * * *
11487964 CGGGGGGTGAGCGCACAAGATATGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATC
389 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
11488029 CCTCATCAAACATCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGTTGCC
454 CCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
11488094 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTT
519 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
11488159 CGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTT
584 CGA-ATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * **
11488224 GGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCTTAACCGTAAAAAGTTTCAAAAATCAT
648 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
11488289 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
713 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** *
11488354 AATTTACAAATCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCGAC
778 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
11488419 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
843 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGC
* * * * *
11488479 CCGCCCACCCACTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAG
1 CCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * ** * * * *
11488544 ACCAGATCAAGGGTTACGACAGTAGGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGC
66 ACCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
* * ** * * * *
11488609 TTGCGCATCTCGCCCCT-TCGATCGGCTGAGCACCCGCACACTTGTTTCGTGGTTTGACTTATGC
131 TTGCGCATCCCACCCCTCT-GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
11488673 ATATGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCG
195 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
** * * **
11488738 AGGGTTACGGCAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCA
260 AGGGTTGTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCA
* * * ** * * * *
11488803 CCACCG-TCGGAGCATCATTGGAGAACCTGACCGACGGCATTGAGGTTCTGGCGAT-GGAGGCAC
325 CCATCGCT-GGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCGC
* *
11488866 CGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATC
389 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
11488931 CCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCC
454 CCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
11488996 AGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCAC-AAATCTTGTACACTT
519 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
11489060 CGAATTTTGAGCTGAATTTTTTTGTGCATACCAACAAAAATATAAGGATCACGTCTACCAAGTTT
584 CGAATTTT-AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * ** * *
11489125 GGAGCCAGAATTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTAAAAAATCAT
648 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
*
11489190 AAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTAT
713 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTAT
*
11489255 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
777 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * *
11489320 CGACCCTATCGATCCACGGCATGCGCATCCCGTCTCTTTGGTCGACATAGTGCTCGCCTGCCCAC
842 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTG--C-CC-GCCCGC
* * * * * **
11489385 CCTCCTACCCGCTCATTTCGTCAGTTGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGG
1 CCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** * * * *
11489450 ACCAGACTAAGGGTTGCGGTAGCAAGATCGGCAGCATGTAGAGGGGGACCTGATCGATCCTCGGC
66 ACCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
* * *
11489515 TTGCACA-CCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCTTTTCGTGGGTTGACTTAGGC
131 TTGCGCATCCC-ACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
*
11489579 ATACGGAGTTCATTCCCAGTCT-AGGAT-C--AG---A----C---C--AGA-C---C--G---G
195 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
* * *
11489619 -GGGTTGTGACAACACATTCTTGGCTCGGGCGTGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCA
260 AGGGTTGTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCA
* * *
11489683 CCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTGACAATGGGGTTCCGGTGATCAGGGGG-GC
325 CCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATC-GGGGGCGC
11489747 CG
389 CG
11489749 TATGCCTAAG
Statistics
Matches: 5041, Mismatches: 595, Indels: 210
0.86 0.10 0.04
Matches are distributed among these distances:
875 1 0.00
876 282 0.06
877 198 0.04
878 293 0.06
880 230 0.05
881 355 0.07
882 331 0.07
883 2 0.00
884 3 0.00
885 1 0.00
886 1 0.00
889 1 0.00
890 3 0.00
892 26 0.01
893 248 0.05
894 2 0.00
895 6 0.00
896 3 0.00
897 241 0.05
898 9 0.00
899 366 0.07
900 268 0.05
901 687 0.14
902 684 0.14
903 12 0.00
904 236 0.05
905 89 0.02
906 182 0.04
907 2 0.00
908 72 0.01
909 206 0.04
910 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
CCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
TTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGA
GGGTTGTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCAC
CATCGCTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGCGCCG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGC
Found at i:11488721 original size:26 final size:26
Alignment explanation
Indices: 11488671--11488723 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11488661 TTTGACTTAT
* **
11488671 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11488697 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11488723 G
1 G
11488724 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11490639 original size:26 final size:26
Alignment explanation
Indices: 11490603--11490655 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11490593 CCAATTCGAT
11490603 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11490629 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11490655 C
1 C
11490656 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11491513 original size:894 final size:895
Alignment explanation
Indices: 11489746--11493630 Score: 5259
Period size: 894 Copynumber: 4.3 Consensus size: 895
11489736 ATCAGGGGGG
* * * *
11489746 CCGTATGCCTAAGTCAACCGATGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCGGGATG
1 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * ** * * *
11489811 CGTAAGTCGGGGATT-AGCCGGGTCCCCCTCTGTGTGCTGTTGATCTTGCTACCGGAACCCTCAG
66 CGCAAGTCGGGGATTGATCC-GGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCGG
* *
11489875 TCTGATCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGATGA-AACGAACGGG
130 TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-A--ACAA--AAC--G
* * * * * * *
11489939 CAGGTGGGCGGGCGAGCACTATGCCAGCCAGAGAGACGGGATGCACAAGACGTGAATCGATAGGA
188 -A-GTGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * **
11490004 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GGATTCCAATGCCATTTTTATTACTTGTAA
251 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG-TGCCAATGCCATTTTTATGGCTTGTAA
* *
11490068 ATTCATACAATCATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGCTTTCTATTT
315 ATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* ** * **
11490133 TTCACT-ATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTATAATTTTTTCGAAAGGAGTTTTCA
380 TTCA-TGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
* * *
11490197 CCCCAAACTTGGTAGATGCGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAA
444 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
11490262 CTCGAAGTGTACAAGATTTCATGACCATTTAAAAAAAGTGTCCCCATTCCAGACTCTTTAATGGC
509 CTCGAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGC
*
11490327 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
574 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
* * * *
11490392 GAGGGATAGGGGGCCAATTTAAGGGCCAAGTACCAGCACCAATCGCACATCATTTGCGCACACCC
639 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
* * * * *
11490457 CCCGG-CCCCCCAATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACAA
704 CCCGGCCCCCCCGATCACCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGA
* * *
11490521 TGGTGCCCCAGTGAAGAAAAATACGGTACCAGCACATGCCCGAGCCCAGCATGTGCTACTGTAAC
769 TGGTGCCCCAGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAC
* * *
11490586 CCTTGGTCCAATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
834 CCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
*
11490648 CCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATG
1 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * *
11490713 CGCAAGTTGGGGATTGATCAGGTCCCCCTCTACGTGCTGTCAATCCTACTGCCACAACCCTTGGT
66 CGCAAGTCGGGGATTGATCCGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCGGT
* * * *
11490778 CTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCTAACCAACAAAACGAGTGGGCA
131 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGTGGGCG
* * * * * *
11490843 GGCGGGCACTGCGTCAGCCAGAGAGACGGGATGCGCAAGCCATGAATCGATAGGGTGGCAAGTGC
196 GGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
11490908 GTTTAGGCACATCTTGATATTTCTACGTGCCAATGCCATTTTTATGGCTTTTTAATTCATACAAT
261 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
11490973 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
326 CGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * * *
11491038 TGAAA-TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGATTTTTTGCCCCAAACTTTG
391 TGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
* * *
11491102 TAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
456 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * * *
11491167 AAGATTTTGTGATCATTTGAAAAAAGGGTACCAATTTCAGACACTTTAATGGCTACTGGCAGCAA
521 AAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAA
* **
11491232 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
586 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
** **
11491297 ATCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCC
651 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCC
* * * * * ** * *
11491362 GATCACCGAAACCGCAATGCCATCGATTAGGTTCTCCGGCGATGCTTTGGCGATGGTGCCCCGGC
716 GATCACCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAGC
* * *** *
11491427 AAAGTAAAATGTTGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGTAACCCTTGGTCCAGT
781 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTTGGTCCAGT
11491492 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
846 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
11491542 CCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGGAGGGGCGGGATG
1 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* ** * * * * * *
11491607 CGCAAGTCGGGGA-TCATCCGAGTCCCCCTCTATGTGTTGCCAATCCTACTATCACAACCCTCGA
66 CGCAAGTCGGGGATTGATCCG-GTCCCCCTCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCGG
* * * ** *
11491671 TCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGC
130 TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGA--GTG-
* * * *
11491736 CGGCGGGCGGGAGAGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATACGGT
192 -GGCGGGC--G-G-GCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * * * *
11491801 GGTAGGTGGGTTTAGGCACATCTTCATATCTCTGCATTCCAATTCCATTTTTATTGCTTGTAAAT
252 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
11491866 TCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
317 TCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * * ** * *
11491931 CACAATTTTTGATACTTTTTGCAGTTTGGGATTTTTTATAATTTTTTCAAAAGGAGTTTTGGCCC
382 CATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
*
11491996 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAATTCAGCTAAAAACTC
447 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
11492061 GAAGTGTACAAGATTTCGTGACCATTTTAAAAAATTGTCCCCATTTCAGACTCTTTAATGGCTAC
512 GAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTAC
*
11492126 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGGTGAG
577 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
* *
11492191 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCATGTTCGCACACCCCTC
642 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC-C
* ** * *
11492256 CGGCCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATG
706 CGGCCCCCCCGATCACCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATG
* * * * **
11492321 GTGCCCCGGCGAACAAAAATACAGAACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCC
771 GTGCCCCAGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCC
** * *
11492386 TTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAGACCT-GGAATGAACT
836 TTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-CTGGGAATGAACT
* *
11492446 CTGTATGCCTAAGTCAACGCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATG
1 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * * * *
11492511 CGTAAGTCGAGGATCGATCGGGTCCCCCACTGCGTACTGTCGATCCTGCTACCGTAACCCTCAGT
66 CGCAAGTCGGGGATTGATCCGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCGGT
* *
11492576 CC-AGTCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCAACAAAACGAGTGGGC
131 CCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGTGGGC
* * *
11492640 GGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGCAAGTG
195 GGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
11492705 GGTTTAGGCACATTTTCATATTTCTATGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAA
260 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
11492770 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
325 TCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
** * * * *
11492835 TTGAAACTTTTTATGGTTCAGGATTTTTTTAAACTTTTT-GCAGAAGGAGTTTTGGCCCTAAACA
390 TTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCG-A-AAGGAGTTTTGGCCCCAAACT
*
11492899 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTG
453 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
11492964 TACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAG
518 TACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAG
11493029 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
583 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
* *
11493094 GGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGCCC
648 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCC
* * * *
11493159 CCCCGATCGCC-AGAACCCCAATGCCACCGGTCAGGTTCTTCGGTGATGCTCTGACGATGGTACC
712 CCCCGATCACCGA-AACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
* * ** *
11493223 CCAACGAAGAAAAATACGGCACCAGCACATGCCGGAGCCCAGCATGTGCTGTCGTAACCCTTGAT
776 CCAGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTTGGT
* * *
11493288 -CAGTCCAATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACT
841 CCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
11493342 CCGTATGCCTAAGTCAA-CCATTAAATGAGCGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATG
1 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * * * * *
11493406 CGCAAGCCAGGGATCG-GCCGTGTCCCCCTTTGCGTGCTGCCAATCCTGTTGCTGCAAGCCTCGG
66 CGCAAGTCGGGGATTGATCCG-GTCCCCCTCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCGG
** * * * *
11493470 TCCGATCCAATCTTAGCCTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA----GC
130 TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGTGGGC
* **
11493531 GGGCGGGTACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
195 GGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
11493596 GGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
260 GGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
11493631 AACATTTTCA
Statistics
Matches: 2621, Mismatches: 336, Indels: 63
0.87 0.11 0.02
Matches are distributed among these distances:
891 94 0.04
893 286 0.11
894 502 0.19
895 140 0.05
896 270 0.10
897 380 0.14
898 14 0.01
899 1 0.00
900 10 0.00
901 2 0.00
902 325 0.12
903 278 0.11
904 313 0.12
905 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATG
CGCAAGTCGGGGATTGATCCGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCGGT
CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGTGGGCG
GGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
CGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
TGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCC
GATCACCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAGC
GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTTGGTCCAGT
CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
Found at i:11491533 original size:26 final size:26
Alignment explanation
Indices: 11491497--11491549 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11491487 CCAGTCCAAT
*
11491497 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11491523 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11491549 C
1 C
11491550 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11493335 original size:26 final size:26
Alignment explanation
Indices: 11493297--11493349 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11493287 TCAGTCCAAT
* * *
11493297 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11493323 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11493349 C
1 C
11493350 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11494379 original size:26 final size:26
Alignment explanation
Indices: 11494350--11494403 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
11494340 ACCCTCGGTC
11494350 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
11494376 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
11494402 TA
1 TA
11494404 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:11495004 original size:26 final size:27
Alignment explanation
Indices: 11494968--11495025 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
11494958 CCGGTCCGAT
*
11494968 CTTAGATTGGGAATGAACTCTGTATG-
1 CTTAGATTGGGAATGAACTCCGTATGC
11494994 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGATTGGGAATGAACTCCGTATGC
11495021 CTTAG
1 CTTAG
11495026 TCAACCCACG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (27 bp):
CTTAGATTGGGAATGAACTCCGTATGC
Found at i:11496709 original size:718 final size:712
Alignment explanation
Indices: 11495201--11497139 Score: 3004
Period size: 718 Copynumber: 2.7 Consensus size: 712
11495191 GAGGAAACGA
* *
11495201 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGG
1 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
11495266 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
11495331 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTTC
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
11495396 AAAACTTTTTTCAGTTCGGGATTTTTTTAAATTTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGC
196 GAAACTTTTTACAGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
11495460 TAGACGTGATCTTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
11495525 AAGATTTTGTGACCATTTGCAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAACAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
11495590 ACCTGTAAAATCTTAAATGC-TCTGTAAGGGGTTTGAGTTCTCGAGGTTTGATGTGGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTTTTG-AAGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
11495654 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGCCCCCG
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCACCCCCCA
* * * *
11495719 ATTGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCTGACGATGCTTCGATGATAGTGCCCCGGTG
519 ATTGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGACGATAGTGCCCCGGTG
*
11495784 AAGAAAAATACGGCACCAGCACATGCCCCGAGCCCAGCACGTGCTGCCGCAACCCTCGATCTGGT
584 AAGAAAAATACGGCACCAGCACATGCCCCGAGCCCAGCACGTGCTGCCGCAACCCTCGATCCGGT
* *
11495849 CTGATCTTGACTGGGAATGAACTCCGTATGCTTAAGCCAACCGACAAAACAAGCAGACGGGCGG
649 CTGATCTTGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACAAGCAGACGGGCGG
* *
11495913 GTGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
11495978 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
11496043 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCTA-GATTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-ACGATTTT
* * *
11496107 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGGAGGAGTTTTGGCCCCAAACTGGG
195 TGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
11496172 TAAATGTGATCCTTGTATTTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
260 TAGACGTGATCCTTGTA--TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
11496237 ACAAGATATTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGC
323 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
11496302 AAACCTATAAAATCTCAAATGCTTTTGAAGGGGGTTTGAGTTCTCGAGGTTTGCTGAGGGATACG
388 AAACCTGTAAAATCTCAAATGCTTTTGAA-GGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
11496367 GGGCCAATATAAGGGTCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCCCTGACCC
452 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC--A-CC
* * * * *
11496432 CCCCAATTGTCGAAACCCCAATGCTGCCGGTTAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCC
514 CCCCAATTGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGACGATAGTGCCC
* *
11496497 CGGTGAAGAAAAATACGGCACCAGCACATG-CCCGAGCCCAGCATGTGCTGCCGCAACTCTCGAT
579 CGGTGAAGAAAAATACGGCACCAGCACATGCCCCGAGCCCAGCACGTGCTGCCGCAACCCTCGAT
* *
11496561 CCGGTCTGATCTTAGGCTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACAAGCGGACG
644 CCGGTCTGATCTT-GACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACAAGCAGACG
11496626 GGCGG
708 GGCGG
* * * * *
11496631 GCGGGCACTACGTCTGCGAGAGAGACGGGATGCGCATGGCGTGGATCGATAGGGTGGTAGGTGTG
1 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
11496696 TTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
11496761 GTCCCTTAAGCCTTCACGGGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * **
11496826 GAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTTGGAAGGTTTTTTGGCCCCAAACTTGGT
196 GAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
11496891 AGACATGATCCTTGTATTTTTGGTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACA
261 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
11496956 AGATTTTGCGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * * * *
11497021 CCTGTTAAATCTCAAATGTTCTTTAAAGGGGTGTAAGTTCTTGAGGTTTGATAAGGGATAGGGGG
391 CCTGTAAAATCTCAAATGCT-TTTGAAGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
11497086 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGTGCACACCCCC
455 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
11497140 TCGGCCCCCT
Statistics
Matches: 1118, Mismatches: 97, Indels: 20
0.91 0.08 0.02
Matches are distributed among these distances:
711 16 0.01
712 238 0.21
713 1 0.00
714 126 0.11
715 91 0.08
716 205 0.18
717 51 0.05
718 390 0.35
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (712 bp):
GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTTTTGAAGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCACCCCCCAAT
TGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGACGATAGTGCCCCGGTGAA
GAAAAATACGGCACCAGCACATGCCCCGAGCCCAGCACGTGCTGCCGCAACCCTCGATCCGGTCT
GATCTTGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACAAGCAGACGGGCGG
Found at i:11498296 original size:26 final size:26
Alignment explanation
Indices: 11498260--11498312 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11498250 GTTGACTTAG
11498260 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
11498286 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11498312 G
1 G
11498313 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11499513 original size:819 final size:821
Alignment explanation
Indices: 11498286--11499767 Score: 2402
Period size: 819 Copynumber: 1.8 Consensus size: 821
11498276 CCCAGTCTAA
**
11498286 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGACAGCACATGCTAGG
* * ** **
11498351 CTCGAGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGA
66 CACGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACCGGAGA
* * * * *
11498416 ACCTGACCAATAGCATTGGGGTTCCGACGATCCTGGGGGCCGGGGGGGTTATGCGCACATGATGT
131 ACCTGACCAACAGCATTGGGGTTCAGACGATCCGGGGGGCC-GGAGGGATATGCGCACATGATGT
* * **
11498481 GCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCAATGGGTGCTGGTACTGGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
11498546 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
11498611 TGGGAAAACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATCTTTTT
325 TGGGAAAACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTT
* * *
11498676 GTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGAGGCCAAAACTCCTTCCGAAAA
390 ATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAA
*
11498741 AATTTTGAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCTC
455 AATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCTC
*
11498805 TTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
11498870 CATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
584 CATTGGC-TCACAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTT
11498934 GCGCATCCCGTCTCTCTGGCCGGAGTAGTACCCGGTTGCCCATTCGGATCAGCCTGAGGGTTGCG
648 GCGCATCCCGTCTCTCTGGCCGGAGTAGTACCCGGTTGCCCATTCGGATCAGCCTGAGGGTTGCG
11498999 GCAGCAGGATCGGCAGCTTGCAGAGGGGGACCCGGCTGATCCCTGGCTTGCGCATCCCGCCCCTC
713 GCAGCAGGATCGGCAGCTTGCAGAGGGGGACCCGGCTGATCCCTGGCTTGCGCATCCCGCCCCTC
11499064 TGGCCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAG
778 TGGCCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAG
* *
11499108 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGACAGCACATGCTAGG
*
11499173 CAC-AGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAG
66 CACGA-GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACCGGAG
* * *
11499237 AACCTGACCGACAGCATTGGGGTTCTAG-CGATCGGGGGGGCC-GAGGGATGTG-GCACATGATG
130 AACCTGACCAACAGCATTGGGGTTC-AGACGATCCGGGGGGCCGGAGGGATATGCGCACATGATG
*
11499299 TGCAATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
194 TGCAATGGGTGCTGGTACTGGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTC
** * *
11499364 GTA-CCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGA
259 ACACCCCT-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * * * *
11499428 CATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTT
323 AATGGGAAAACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTT
* * *
11499493 TTATGCCTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
388 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAA
*
11499558 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCT
*
11499623 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
11499688 GCATTGGCTCACAGAAATATGATGATGTGCCTAAACCGACCCACCATCCTATCGATCCACGGCTT
583 GCATTGGCTCACAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTT
11499753 GCGCATCCCGTCTCT
648 GCGCATCCCGTCTCT
11499768 TTGGACGACA
Statistics
Matches: 604, Mismatches: 51, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
818 5 0.01
819 437 0.72
820 9 0.01
821 1 0.00
822 151 0.25
823 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (821 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGACAGCACATGCTAGG
CACGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACCGGAGA
ACCTGACCAACAGCATTGGGGTTCAGACGATCCGGGGGGCCGGAGGGATATGCGCACATGATGTG
CAATGGGTGCTGGTACTGGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGAAAACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTA
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCTCACAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGAGTAGTACCCGGTTGCCCATTCGGATCAGCCTGAGGGTTGCGGCA
GCAGGATCGGCAGCTTGCAGAGGGGGACCCGGCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGG
CCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAG
Found at i:11500001 original size:26 final size:26
Alignment explanation
Indices: 11499965--11500017 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11499955 GTTGACTTAG
*
11499965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11499991 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11500017 G
1 G
11500018 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11500237 original size:243 final size:243
Alignment explanation
Indices: 11499809--11500294 Score: 936
Period size: 243 Copynumber: 2.0 Consensus size: 243
11499799 CTTGTTTCAT
11499809 CGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACAGCA
1 CGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACAGCA
11499874 CGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGACTGAGCACCCA
66 CGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGACTGAGCACCCA
11499939 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
131 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
11500004 ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCACATGC
196 ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCACATGC
* * *
11500052 CGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCA
1 CGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACAGCA
11500117 CGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGACTGAGCACCCA
66 CGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGACTGAGCACCCA
11500182 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
131 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
*
11500247 ATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCACATGC
196 ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCACATGC
11500295 TGGGCTCGAG
Statistics
Matches: 239, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
243 239 1.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (243 bp):
CGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACAGCA
CGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGACTGAGCACCCA
CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCACATGC
Found at i:11500244 original size:26 final size:26
Alignment explanation
Indices: 11500208--11500260 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11500198 GTTGACTTAG
*
11500208 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11500234 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11500260 G
1 G
11500261 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11501144 original size:26 final size:26
Alignment explanation
Indices: 11501108--11501160 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11501098 GTTGACTTAG
*
11501108 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11501134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11501160 G
1 G
11501161 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11501872 original size:26 final size:26
Alignment explanation
Indices: 11501836--11501888 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11501826 GTTGACTTAG
*
11501836 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
*
11501862 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
11501888 G
1 G
11501889 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCACTCTAA
Found at i:11503652 original size:26 final size:26
Alignment explanation
Indices: 11503616--11503668 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11503606 TGGGTTGACT
*
11503616 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCACAGTC
11503642 TAAGCATACGAAGTTCATTCACAGTC
1 TAAGCATACGAAGTTCATTCACAGTC
11503668 T
1 T
11503669 GAGATAAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCACAGTC
Found at i:11504077 original size:903 final size:900
Alignment explanation
Indices: 11502742--11509747 Score: 8129
Period size: 895 Copynumber: 7.8 Consensus size: 900
11502732 GTTGACTTAG
* ** * * * * * *
11502742 GCATACGGAGTTCATTCCCATTCTAAGATTGGATCGGACTGAGGGTTGCGGTAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
11502807 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCAGGGTACCATCGTCGAAGCATCGCCAAAAA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
11502872 ACCTGACCGGCGGCATTAGGGTTCCGGCGATC-GGGGCGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
11502936 CGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
11503001 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11503066 GGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
11503131 TGCATGCCAACAAAAATACAAGGACCACGCCTACCAGGTTTGGGGCCAAAACTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * ** * *
11503196 ATTTAAAAAAATCCCGAACTGTAAAAAGATAAAAAAATCTTGAAAAATAAAAAACGAGTCATCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
* * * * *
11503261 GCCATGAAACTTCACGTGAAAGCCTAAGGGACCACTATATGAATTTACAAGACATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
11503326 TT-GCAACACAGAAATATGAAGATGTACCTTAACCCACCTACCACGCTATCGATCCATGGCTTGC
585 TTGGC-ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
*
11503390 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCCGCCCGCCCGCTCGTTTCGTCAGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CCCGCCCGCCCGCTCGTTTCGTCAGTTGG
*
11503455 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGTGGTAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGGAT
* * * * *
11503520 TGGCAGCATGTAGAGGGGGACCCGGTTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
776 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
11503585 AACGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTAA
841 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
11503645 GCATACGAAGTTCATTCACAGTCTGAGATAAGACCAGACCGAGGGTTGCGGCAGCACATACAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * ** * * * *
11503710 CTCCGAAATGTGCTGGTGCTGCATTTTTCTTCACCGAGGTACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
11503775 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
11503840 GATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
11503905 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAATTG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
11503970 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTGTTTTAT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* **
11504035 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGCAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* ** * * *
11504100 TTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATGGAAAACGAGTCGTCTTA
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTG
* * * *
11504165 CCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTAACAAGCCATCAAAATGTCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * *
11504230 TGGCATGCAGAAATATGAAGGTGT-TCTGAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
586 TGGCACACAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGACTTGCG
* *
11504294 CATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCCGCCCGCCCGTTCATTTCGTCAGTTGGCTTA
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTA
* * * * ** **
11504358 GGCATACGGAGTTCATTCCCAGTTTAACATTGAACCAGACCGAGGGTTGTGACAGTGGGATCGGC
715 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGGATCGGC
* * * * * *
11504423 AGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGGTTGAGCA
780 AGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* *
11504488 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTTA
845 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11504544 GCATATGAAGTTCATTCCCTA-TCTAAGATCAGA-CAGGACCGAGGGTTGCGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCACATGCTG
* * ** * *
11504607 GGCTAGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTTGGAGCATCGTCAGA
64 GGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * * *
11504672 GAACCTGACCGGCAGCGTTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGTGTACGCACTTGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATG
*
11504737 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
11504802 ACACCCCCTTAAAGAACGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
11504867 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
11504932 TGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGACCAAAACTCCTTCCGAAC
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* *** **
11504997 AAATTTTAAAAAATCTCGAACTACAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTC
* * * *
11505062 TTGCCATGAAACTGCACGTGAACGCTTAAGGGACTATTGTATCAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** ** * * * *
11505127 CATTAACATGCAGGAATATGAAGATGTGCCCAAACCCACCTACCGCCCTATCGATCCACGACTTA
583 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
** * * * *
11505192 CGCATCCTATCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCTCGCTCATTTCATCGGTTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-C-CGCCCGCCCGCTCGTTTCGTCAGTTG
** * * * * *
11505257 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGAAGTAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGGA
** * * * *
11505322 TCGATAGCACGCAGAGGGGGACCCGACCGACCCCCGACTTGCACATCCTGCCCCTC-GGCCGGCT
775 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
11505386 AAGCACCTGCACGTTTGTTTCGTGGGTTGACTTAGG----C--A--T-A----C-G-----
840 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11505428 G--TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCACCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
11505491 CTTGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
11505556 ACCTGACCGGCGGCA-TGGGGTTCCAGA-GATTGAAGGGGCATGG-CAGGGGGTGTGTGCAAATG
131 ACCTGACCGGCGGCATTGGGGTTCC-GACGATCG--GGGG---GGCCGGGGGGTGTGCGCACATG
*
11505618 AT-TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
11505682 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAACTATCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
11505747 GAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTAT-GAGTTTTTAGCTGAATT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATT
* * * * *
11505810 TTTTTGTGCAT-CAAACAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAACCACCTTCT
384 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
11505874 GAAAAAATTTTAAGAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGT
449 AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGT
* * **
11505939 CGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAATTCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
11506004 ATGGTATTGGCACATAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
579 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
* * * ** * *
11506069 CTTACGCAT-CCGTCTTTCTGGCCGGCGTAGTGCCCG-CCCGTTCGCTCGCTTGTTTCGT-AGGT
644 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCA-GT
* * * *
11506131 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTATGATTGGACCGAACCAAGGGTTGTGGTAGCAG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAG
* ** *
11506196 GATCGGCAACATACAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGG
773 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGG
*
11506261 CTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-T--
838 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11506321 ---T---GAG---------A-TC----A--A-ACCGGATCGAGGGTTACGGTAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
11506363 CTCAGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGGGTATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * ** * * *
11506428 ACCTGACTGGTGGCATTGAGGTTTTGGCGATC-GAGGGGTCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * *
11506492 GATGGGTGCCGCTACATGGCCCTTATATTGGCCCTCTATCCCTCATCAATCCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
11506557 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGAAGCCATTAATGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
11506622 GGGACACTTTTTTCAAATGCTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * * **
11506687 GCATGCCAACAAAAATACAAGGATCAATTCTACCAAGTTTAGGGCCAAAAATCCTTCTGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* ** * *
11506752 CTTTAAAAAATCCCGAACC-TCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
456 TTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
*
11506816 GCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
11506881 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* *
11506946 CATCCCGCCTCCCTGGCCGACGTAGT----G-CCCGCCCGCCCGCTCGTTTCGTC-GATTGGCTT
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCAG-TTGGCTT
* * * ** ** *
11507005 AGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAGGGTTACGGTAATAGGATCGA
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGGATCGG
** * * * * * *
11507070 CAGCACATAGAGGGGGGACCCGACCGATCCCCGGCTTGTGTATCTCGCCCCTCTAGCCGGCTGAG
779 CAGCACGCAGA-GGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
11507135 CACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
11507193 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGCAGCACATGGTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * *
11507258 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGAAGCGTCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
11507323 ACCTGATCGGCGGCA-TGGGGTTCCGATGAAT-GGGGGGCCCGGGGGGTGTGCGCACATGATGCT
131 ACCTGACCGGCGGCATTGGGGTTCCGACG-ATCGGGGGGGCCGGGGGGTGTGCGCACATGATG-T
** *
11507386 -CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTGCTATCCCTCATCAAACCCCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
11507450 CACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
11507515 TGAGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTCTAGCTGAAGTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
11507580 GTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGATAAAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
11507645 AATTTAAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AATTT-TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTC
*
11507710 TTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
11507775 CATTGGCACACAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTTTCAATCCACGACTTG
583 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * * * **
11507840 CGCATCCCGTCTTTCTGGCCGGCGTAGT----G-CCTGCCCGCCCACTCGTTTCATTGGTTGGCT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCT
* ** * * ** * * *
11507900 TAGGCATACGGAGTTCATTGCCAGTCTAAGATAAGATCGAATAGAGGGTTATGGCAGCAAGATCG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGGATCG
* * * *
11507965 GCAGCACGCAGAGGGGGACCCGATCGATACCTGACTTACGCATCCCGCCCCTCTGGCCTGCTGAG
778 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * * *
11508030 AACCCGTACGCTCGTTTCATGTGTTAACTTAGGCTTACGGAGTTCATTCCTAGTCTAA
843 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
11508088 GCATACGGAGTTCATTCCCAGTATAAGATCAGATCGGATCGATGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
11508153 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACTATCGTCGGAGCAT-GACCGGAG
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-TCGGAG
* * *
11508217 AACCTGACAGGCGGCATTGGGTTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
11508282 CGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTAAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
11508347 ACCTCCTTAAAGAGCATTTGAGATTTTTCA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11508411 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTCTAGCTGAA-TTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
11508475 TGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGATAAAACTCCTT-CAGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA-AAAA
* * *
11508539 AACTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT-TATGAAAAATGGAAAACGAGTCGTC
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCT-TGAAAAATAGAAAACGAGTCGTC
* *
11508603 TTCCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
11508668 CATTGGCATGCAGAAATATGAAGATGTGCGTAAA-CCACCTACCACCCTATCGATCCATGACTTG
583 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * * *
11508732 TGGATCCCGTCTCTCTGGCCGACGTAGTGCCCGTACGCCCGGCCACCCGCTCGTTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CCCGCCCGCCCGCTCGTTTCGTCAGTTG
* * *
11508797 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGTCCGGACTGAGGGTTGTGGTAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGGA
* * ** * ** * *
11508862 TCGACAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGACG
775 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
*
11508927 GAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
11508988 GCATATGGAGTTCATT-CCAGTCTAAGATCAGACCAGAATGAGGGTTGCGGCA--ACAGGATTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATG-CTGG
* *** * * * * ** * * ** *
11509050 TAGCACGCAGAGGGGGACCGATCGATCCCCGGCTTGTGCATCTCGCCCTCTGGCCGGC-TGAGCG
65 --GCTCG--G-GCATG--TG-TTGGT-GCCGTATTTTTC-T-TCG---TC-GG--GGCACCATCG
* * * * *** * * *
11509114 CCCGCACGC-TCGTTTCGTG-G--GCTG-TCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATT
113 -TCGGA-GCATCG--TCG-GAGAACCTGACCGGCGGCATTGGG-G----TT-CC-G---ACGATC
*** * * * * * * *** * * ** *
11509174 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT--GTCGCATTTTT
163 GG-GGGGGCCGGGGGGTG-TGC-GCACATGATGTGCGATGG---GTGCTGGTACTTGGCCCTTAT
* * ***** * * * * ** * ** *
11509237 CTT--CACTGGGGCAC-CATC--GCC-GGAGCA-T--CA------T-CGGAGAACCTAAGATTTT
222 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
11509286 ACAGGTTTTCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
287 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
11509351 AATTTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTTTGCATGCCAAGAAAAATACAAGGATCA
352 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * ** *
11509416 CGTCTACCAAGTTTGGAGCCAAAACTCCTGCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
417 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* *
11509481 GTTTCAAAAAT-TGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCATGTGAAGGCTTA
482 GTTTCAAAAATCT-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
**
11509545 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
546 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
* * **
11509610 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGTGTAGT
611 CCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* * * * *
11509675 GCCCGCCCGCCCGCCCCTCCCGTTCATTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCCCAG
676 GCCCG--C-CCCG-CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAG
11509740 TCTAAGAT
737 TCTAAGAT
11509748 CAAACTGGAC
Statistics
Matches: 5232, Mismatches: 731, Indels: 267
0.84 0.12 0.04
Matches are distributed among these distances:
867 3 0.00
868 105 0.02
869 225 0.04
870 62 0.01
871 228 0.04
872 119 0.02
873 9 0.00
875 2 0.00
876 119 0.02
877 40 0.01
878 4 0.00
879 2 0.00
880 24 0.00
881 237 0.05
882 183 0.03
883 140 0.03
884 16 0.00
885 2 0.00
886 3 0.00
887 1 0.00
888 2 0.00
889 4 0.00
890 2 0.00
891 1 0.00
892 53 0.01
893 147 0.03
894 80 0.02
895 664 0.13
896 411 0.08
897 7 0.00
898 5 0.00
899 367 0.07
900 659 0.13
901 1 0.00
902 4 0.00
903 625 0.12
904 134 0.03
905 1 0.00
906 3 0.00
907 7 0.00
908 1 0.00
909 2 0.00
912 15 0.00
913 88 0.02
914 227 0.04
915 72 0.01
916 56 0.01
917 3 0.00
918 1 0.00
919 4 0.00
920 1 0.00
921 2 0.00
922 4 0.00
923 2 0.00
924 6 0.00
925 13 0.00
926 5 0.00
927 13 0.00
928 8 0.00
930 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11505004 original size:900 final size:900
Alignment explanation
Indices: 11502742--11509747 Score: 8120
Period size: 900 Copynumber: 7.8 Consensus size: 900
11502732 GTTGACTTAG
* ** * * * *
11502742 GCATACGGAGTTCATTCCCATTCTAAGATTGGATC-GGACTGAGGGTTGCGGTAGCACATACTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * ** *
11502806 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCAGGGTACCATCGTCGAAGCATCGCCAAAA
66 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
11502871 AACCTGACCGGCGGCATTAGGGTTCCGGCGATC-GGGGCGCCGGGGGGGTGTGCGCACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
11502935 GCGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
11503000 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
11503065 TGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
11503130 GTGCATGCCAACAAAAATACAAGGACCACGCCTACCAGGTTTGGGGCCAAAACTCCTTCCAAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAA
* * * ** * * *
11503195 AATTTAAAAAAATCCCGAACTGTAAAAAGATAAAAAAATCTTGAAAAATAAAAAACGAGTCATCT
455 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * *
11503260 TGCCATGAAACTTCACGTGAAAGCCTAAGGGACCACTATATGAATTTACAAGACATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * * *
11503325 ATT-GCAACACAGAAATATGAAGATGTACCTTAACCCACCTACCACGCTATCGATCCATGGCTTG
585 ATTGGC-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* *
11503389 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCCGCCCGCCCGCTCGTTTCGTCAGTTG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCCCGTTCGTTTCGTCAGTTG
**
11503454 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGTGGTAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGGA
* * * * * *
11503519 TTGGCAGCATGTAGAGGGGGACCCGGTTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
775 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCT
* * * *
11503584 GAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTAA
840 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
11503645 GCATACGAAGTTCATTCACAGTCTGAGATAAGACCA-GACCGAGGGTTGCGGCAGCACATACAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * * ** * * * *
11503709 GCTCCGAAATGTGCTGGTGCTGCATTTTTCTTCACCGAGGTACCATCGCCGGAGCATCATCGGAG
66 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
11503774 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
11503839 TGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
11503904 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAATT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
11503969 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTGTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
11504034 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGCAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAA
* ** * *
11504099 ATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATGGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * * *
11504164 ACCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTAACAAGCCATCAAAATGTCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
11504229 TTGGCATGCAGAAATATGAAGGTGT-TCTGAAACCCACCTACCACCCTATCGATCCACGGCTTGC
586 TTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGACTTGC
*
11504293 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTCATTTCGTCAGTTGGCTTA
650 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCAGTTGGCTTA
* * * ** **
11504358 GGCATACGGAGTTCATTCCCAGTTTAACATTGAACCAGACCGAGGGTTGTGACAGTGGGATCGGC
715 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGGATCGGC
* * * * *
11504423 AGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGGTTGAGCA
780 AGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCA
* *
11504488 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTTA
845 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11504544 GCATATGAAGTTCATTCCCTA-TCTAAGATCAGA-CAGGACCGAGGGTTGCGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCC-AGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATGCTG
* * ** * *
11504607 GGCTAGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTTGGAGCATCGTCAGA
65 GGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * *
11504672 GAACCTGACCGGCAGCGTTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGTGTACGCACTTGATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCG-GGGGGTGTGCGCACATGATG
*
11504737 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
11504802 ACACCCCCTTAAAGAACGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
11504867 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
11504932 TGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGACCAAAACTCCTTCCGAAC
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAA
* *** ** *
11504997 AAATTTTAAAAAATCTCGAACTACAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
11505062 TTGCCATGAAACTGCACGTGAACGCTTAAGGGACTATTGTATCAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * *
11505127 CATTAACATGCAGGAATATGAAGATGTGCCCAAACCCACCTACCGCCCTATCGATCCACGACTTA
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
** * * * *
11505192 CGCATCCTATCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCTCGCTCATTTCATCGGTTG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-T---TCGTTTCGTCAGTTG
** * * * *
11505257 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGAAGTAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGGA
** * * *
11505322 TCGATAGCACGCAGAGGGGGACCCGACCGACCCCCGACTTGCACATCCTGCCCCTC-GGCCGGCT
775 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCT
* * * *
11505386 AAGCACCTGCACGTTTGTTTCGTGGGTTGACTTAGG----C--A--T-A----C-G-----
840 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
11505428 G--TACGGAGTTCATTCCCAGTCTAAGATCGGATCA-GATCGAGGGTTGCGGCACCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
11505490 GCTTGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
66 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * *
11505555 AACCTGACCGGCGGCA-TGGGGTTCCAGA-GATTGAAGGGGCATGG-CAGGGGGTGTGTGCAAAT
131 AACCTGACCGGCGGCATTGGGGTTCC-GACGA-T-CAGGGG---GGCCGGGGGGTGTGCGCACAT
*
11505617 GAT-TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
190 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
11505681 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAACTATC
255 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
11505746 TGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTAT-GAGTTTTTAGCTGAAT
320 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAAT
* * * * *
11505809 TTTTTTGTGCAT-CAAACAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAACCACCTTC
384 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTC
* * *
11505873 TGAAAAAATTTTAAGAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAG
449 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * **
11505938 TCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAATTCATAAA
514 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *** *
11506003 AATGGTATTGGCACATAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
579 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * ** *
11506068 ACTTACGCAT-CCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGTTCGCTCGCTT-GTTTCGT-AGG
644 ACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-TTCGTTTCGTCA-G
* * *
11506130 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTATGATTGGACC-GAACCAAGGGTTGTGGTAGC
707 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG-ACCGAGGGTTGTGGTAGC
* ** **
11506194 AGGATCGGCAACATACAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCC
771 AGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
*
11506259 GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-T--
836 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
11506321 ---T---GAG---------A-TC-AA-A-C----C-GGATCGAGGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
11506362 ACTCAGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGGGTATCGTCGGAG
66 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * ** * * *
11506427 AACCTGACTGGTGGCATTGAGGTTTTGGCGATC-GAGGGGTCGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
11506491 CGATGGGTGCCGCTACATGGCCCTTATATTGGCCCTCTATCCCTCATCAATCCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
11506556 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGAAGCCATTAATGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11506621 GGGGACACTTTTTTCAAATGCTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * *
11506686 TGCATGCCAACAAAAATACAAGGATCAATTCTACCAAGTTTAGGG-CCAAAAATCCTTCTGAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGACCAAAACTCCTTCCGAAAA
* ** * *
11506750 AACTTTAAAAAATCCCGAACC-TCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
455 AATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
11506814 TTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
11506879 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* *
11506944 CGCATCCCGCCTCCCTGGCCGACGTAGTGCCCGCCCGCCCG--C--TCGTTTCGTC-GATTGGCT
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCAG-TTGGCT
* * ** **
11507004 TAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAGGGTTACGGTAATAGGATCG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGGATCG
* ** * * * * *
11507069 ACAGCACATAGAGGGGGGACCCGACCGATCCCCGGCTTGTGTAT-CTCGCCCCTCTAGCCGGCTG
778 GCAGCACGCAGA-GGGGGACCCGATCGATCCCCGACTTGCGCATCCT-GCCCCTCTGGCCGGCTG
* *
11507133 AGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
11507193 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACTGAGGGTTACGGCAGCACATGGTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATGCTGG
** * * * *
11507257 GCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGAAGCGTCGTCGGAG
66 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
11507322 AACCTGATCGGCGGCA-TGGGGTTCCGATGA--ATGGGGGGCCCGGGGGGTGTGCGCACATGATG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCA-GGGGGG-CCGGGGGGTGTGCGCACATGATG
** *
11507384 CT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTGCTATCCCTCATCAAACCCCGAGAACT
194 -TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
11507448 CACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
11507513 AATGAGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTCTAGCTGAAGTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
11507578 TTGTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGA-TAAAACTCCTTCCAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGACCAAAACTCCTTCCGA
* *
11507642 AAAAATTTAAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
452 AAAAATTT-TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
11507707 GTCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * *
11507772 TGGCATTGGCACACAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTTTCAATCCACGAC
581 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
* * * * * **
11507837 TTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCTGCCCG-CC-CAC--TCGTTTCATTGGTTGG
646 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCAGTTGG
* ** * ** * * *
11507898 CTTAGGCATACGGAGTTCATTGCCAGTCTAAGATAAGATC-GAATAGAGGGTTATGGCAGCAAGA
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG-ACCGAGGGTTGTGGTAGCAGGA
* * * * *
11507962 TCGGCAGCACGCAGAGGGGGACCCGATCGATACCTGACTTACGCATCCCGCCCCTCTGGCCTGCT
775 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCT
* * * * * * *
11508027 GAGAACCCGTACGCTCGTTTCATGTGTTAACTTAGGCTTACGGAGTTCATTCCTAGTCTAA
840 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11508088 GCATACGGAGTTCATTCCCAGTATAAGATCAGATC-GGATCGATGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATGCTGG
** * *
11508152 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACTATCGTCGGAGCAT-GACCGGA
66 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-TCGGA
* * * *
11508216 GAACCTGACAGGCGGCATTGGGTTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
11508281 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTAA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
11508346 CACCTCCTTAAAGAGCATTTGAGATTTTTCA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
11508410 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTCTAGCTGAA-TTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
11508474 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGA-TAAAACTCCTTCAGAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGACCAAAACTCCTTCCGAAA
* * * *
11508538 AAACTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATGGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
11508603 TTCCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
11508668 CATTGGCATGCAGAAATATGAAGATGTGCGTAAA-CCACCTACCACCCTATCGATCCATGACTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * * * *
11508732 TGGATCCCGTCTCTCTGGCCGACGTAGTGCCCGTACGCCCGGCCACCCGCTCGTTTCGTCGGTTG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTG-CC---CGCCCGCCCGCCCGTTCGTTTCGTCAGTTG
* * * *
11508797 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGTCCGGACTGAGGGTTGTGGTAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGGA
* * ** * * * *
11508862 TCGACAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGACG
775 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCT
*
11508927 GAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
11508988 GCATATGGAGTTCATT-CCAGTCTAAGATCAGACCA-GAATGAGGGTTGCGGCA--ACAGGATTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATG-CTG
* *** * * * * ** * * ** *
11509049 GTAGCACGCAGAGGGGGACCGATCGATCCCCGGCTTGTGCATCTCGCCCTCTGGCCGGC-TGAGC
65 G--GCTCG--G-GCATG--TG-TTGGT-GCCGTATTTTTC-T-TCG---TC-GG--GGCACCATC
* * * * *** * *** *
11509113 GCCCGCACGC-TCGTTTCGTG-G--GCTG-TCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGAT
113 G-TCGGA-GCATCG--TCG-GAGAACCTGACCGGCGGCATTGGG-GTTC-CGACGA-TC--AG--
* * * * * * * *** * * ** *
11509173 TGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT--GTCGCATTTT
166 -GG---GGGCCGGGGGGTG-TGC-GCACATGATGTGCGATGG---GTGCTGGTACTTGGCCCTTA
* * ***** * * * * ** * ** *
11509236 TCTT--CACTGGGGCAC-CATC--GCC-GGAGCA-T--CA------T-CGGAGAACCTAAGATTT
222 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
11509285 TACAGGTTTTCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
287 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
11509350 AAATTTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTTTGCATGCCAAGAAAAATACAAGGATC
352 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
11509415 ACGTCTACCAAGTTT-GGAGCCAAAACTCCTGCTGAAAAAATTTTAAAAAATCTCGAACCGTAAA
417 ACGTCTACCAAGTTTGGGA-CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
** * *
11509479 AAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCATGTGAAGGCTT
481 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
11509544 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
546 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * **
11509609 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGTGTAG
611 GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * *
11509674 TGCCCGCCCGCCCGCCCCTCCCGTTCATTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCCCA
676 TGCCCGCCCGCCCG-----CCCGTTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
11509739 GTCTAAGAT
736 GTCTAAGAT
11509748 CAAACTGGAC
Statistics
Matches: 5241, Mismatches: 702, Indels: 307
0.84 0.11 0.05
Matches are distributed among these distances:
867 4 0.00
868 94 0.02
869 224 0.04
870 63 0.01
871 225 0.04
872 133 0.03
873 8 0.00
875 2 0.00
876 110 0.02
877 41 0.01
878 5 0.00
879 2 0.00
880 36 0.01
881 236 0.05
882 184 0.04
883 141 0.03
884 16 0.00
885 2 0.00
886 3 0.00
887 1 0.00
888 2 0.00
889 6 0.00
890 3 0.00
891 2 0.00
892 53 0.01
893 148 0.03
894 88 0.02
895 653 0.12
896 409 0.08
897 15 0.00
898 7 0.00
899 367 0.07
900 660 0.13
901 3 0.00
902 3 0.00
903 624 0.12
904 125 0.02
905 1 0.00
906 3 0.00
907 7 0.00
908 1 0.00
909 2 0.00
911 8 0.00
912 18 0.00
913 88 0.02
914 228 0.04
915 65 0.01
916 57 0.01
917 5 0.00
918 1 0.00
919 3 0.00
921 1 0.00
922 6 0.00
923 2 0.00
925 13 0.00
926 5 0.00
927 13 0.00
928 8 0.00
930 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCAGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11507197 original size:26 final size:26
Alignment explanation
Indices: 11507167--11507219 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11507157 GTTGACTTAG
11507167 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11507193 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11507219 G
1 G
11507220 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11508095 original size:26 final size:26
Alignment explanation
Indices: 11508065--11508114 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11508055 AACTTAGGCT
* *
11508065 TACGGAGTTCATTCCTAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTATAAGCA
11508091 TACGGAGTTCATTCCCAGTATAAG
1 TACGGAGTTCATTCCCAGTATAAG
11508115 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTATAAGCA
Found at i:11509013 original size:25 final size:26
Alignment explanation
Indices: 11508962--11509013 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11508952 GTTGACTTAG
11508962 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11508988 GCATATGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11509013 G
1 G
11509014 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11509134 original size:182 final size:185
Alignment explanation
Indices: 11508803--11509170 Score: 499
Period size: 182 Copynumber: 2.0 Consensus size: 185
11508793 GTTGGCTTAG
** * * * * * *
11508803 GCATACGGAGTTCATTCCTAGTCTAAGATTGGTCCGGACTGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGAATGAGGGTTGCGGCAACAGGATCGACA
* *
11508868 GCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGACGGAGCAC
66 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGACGGAGCAC
*
11508933 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCATTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
11508988 GCATATGGAGTTCATTCC-AGTCTAAGATCAGACCAGAATGAGGGTTGCGGCAACAGGATTGGTA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGAATGAGGGTTGCGGCAACAGGATCGACA
* * * * * *
11509052 GCACGCAGAGGGGGA-CCGATCGATCCCCGGCTTGTGCATCTCG-CCCTCTGGCCGGCTGAGCGC
66 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGACGGAGCAC
* * *
11509115 CCGCACGCTCGTTTCGTGGGCTGTCTTAGGCATAGGGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCATTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
11509170 G
1 G
11509171 ATTGGACCAG
Statistics
Matches: 159, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
182 69 0.43
183 24 0.15
184 49 0.31
185 17 0.11
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGAATGAGGGTTGCGGCAACAGGATCGACA
GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGACGGAGCAC
CCGCACGCTCATTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11510625 original size:26 final size:26
Alignment explanation
Indices: 11510596--11510648 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11510586 GTTGACTTAG
* *
11510596 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
11510622 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
11510648 G
1 G
11510649 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:11511373 original size:890 final size:876
Alignment explanation
Indices: 11509883--11512257 Score: 3046
Period size: 890 Copynumber: 2.7 Consensus size: 876
11509873 CAAAAATCGG
* **
11509883 GGGGGCTGGGGGGTGTATGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
11509948 CCTATCCCTCACCAAACGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTT
* * * * *
11510013 ACTGCTAGTGGCCATTAAAGTGTATGAAATGTGGACACTTTTTTCAAATGGTCCCAAAATCTTGT
130 GCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
11510078 ACACTTCGAGTTTTTTGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACC
195 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
11510143 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTGCACA
260 AAGTTTGGGGCCAAAACTCCTTACGAAAAAATTTTAAAAAATCCC-AACCCTAAAAAGTTTCA-A
11510208 AATCGTGAAAAA-AAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
323 AATCGTGAAAAATAA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
11510272 TTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAA-AAATATGAAGATGTGCCTAAAC
387 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CAAGAAATATGAAGATGTGCCTAAAC
* *
11510336 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCT
450 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * *
11510401 CGCCCGCCTGCCCATTTTTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTGTAAGAT
515 CGCCCGCCTGCCCGTTGTTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * *
11510466 CAGACCGGA-TCGAGGGTTATGGCAACAGGATCAGTAACACGCAGAGTAGGACTCGATCGATCCC
580 CGGACTGGACT-GAGGGTTACGGCAACAGGATCAGTAACACGCAGAGGAGGACTCGATCGATCCC
* * * * * *
11510530 CGGCTTGC-GCATCCTACCCCTTTGGCTGGCTGACCGCC-CGCATGC-TCGTTTCGTGGGTTGAC
644 CGGCTTGCAG-ATCCCACCCCTCTAGC-CGCTGACCGCCAAG-ATGCAT--ATT-G-GGGTTGAC
* *
11510592 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTAATTCCCAGTCT-AAG-ATCAGA
702 TTAAGCATACAGAGTT-ATTCCCAGTCTAAGCATACAGAG-TAATT-CCAGTCTCAAGAATC-GA
* * *
11510655 TCAGA-CTGAGGGTT-GCAGCAGCACATGCTG-GGCTCGGGCATGTGCTGGTGCCGAATTTTTCT
763 CCAGATC-GAGGGTTAG--GAAGCACATGCTGCGGCTCGGGCATG-GCTGGTGCCAAATTTTTCT
* * * * * * **
11510717 TCGTCGGGCCACCATCGTCGGAGAACCTGA-TCGACGGCTTTGG-GATTCCGGTGATCA
824 TCGTC-AG-CACCATCGTCGGA-AACATCAGCCGA-GACATTGGAGA--CCGCAGATCA
* *
11510774 GGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTTGCCC
1 GGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
11510839 TCC-ATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAGAGCATTTGAGATTTGACAGGTT
66 -CCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT-ACAGGTT
* *
11510903 TGCTGCTAGCAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTG
129 TGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * ** * *
11510968 TACACTTCCAGTTTTTAGCTAAATTTTTTTGCACACGCCAAAAAAAATACAAGGATCACGTCTAC
194 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * *
11511033 CATGTTTGGGGTCAAAACTCCTT-CGAAAAAATTTTTTAAAAATCCCAACCCTAAAAAGTTTTCA
259 CAAGTTTGGGGCCAAAACTCCTTACGAAAAAA-TTTTAAAAAATCCCAACCCTAAAAAG-TTTCA
* * *
11511097 AAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCATAAGGGACCA
322 AAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
** * *
11511162 TTGTATGAATTTACAAGCCACGAAAATAGCATTGGCACATAGAAAGATGAAGATGTGCCTAAACC
387 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-AGAAATATGAAGATGTGCCTAAACC
* *
11511227 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCC
451 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
** * * * * *
11511292 GCCCGCCTGCCCGTTGTTTTAATCGGTTGGCTTAGGCATACGGATTTCATTCCCATTCTAAGATT
516 GCCCGCCTGCCCGTTGTTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * * *
11511357 GGACTGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACTCGATCGATCCCCG
581 GGACTGGACTGAGGGTTACGGCAACAGGATCAGTAACACGCAGAGGAGGACTCGATCGATCCCCG
** * * *
11511422 GCTTGCAGATCCCGTCCCTCTAGCCGCTGAGCGCCAAGGTGCATATTGGTGTTGACTTAAGCATA
646 GCTTGCAGATCCCACCCCTCTAGCCGCTGACCGCCAAGATGCATATTGGGGTTGACTTAAGCATA
* * *
11511487 CAGAGTTATTCCCAGTCTAAGCATACAGAGTCATTCCTGTCTCAAGAATCGACCGGATCGAGGGT
711 CAGAGTTATTCCCAGTCTAAGCATACAGAGTAATTCCAGTCTCAAGAATCGACCAGATCGAGGGT
* * *
11511552 TAGGAAGCACATGCTGCGGCTCGGGCATGGCTGTTGCTAAATTTTTCTTCGTCAGCACCATCGTT
776 TAGGAAGCACATGCTGCGGCTCGGGCATGGCTGGTGCCAAATTTTTCTTCGTCAGCACCATCGTC
* * *
11511617 GGAAGCATCAGCCGAGACATTGGAGACTGCAGATCG
841 GGAAACATCAGCCGAGACATTGGAGACCGCAGATCA
* * * * * * *
11511653 GGGATGGTCGATGGAGTTGTGCACACAAATGATATGAGATGGATGCTGGTACTTGAG-CCTTATA
1 GGG--GG-CTA-GGGGGTGTGCGCAC--ATGATGTGCGATGGGTGCTGGTACTTG-GCCCTTATA
* * *
11511717 TTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTCGAGATTCTA
59 TTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT-TA
* *
11511782 CAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
123 CAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
11511847 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCGC
188 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
11511912 GTCTACCAAGTTTGGGGCCAAAACTGCTTACGAAAAAA-TTTAAAAAATCTCGAACCAC-AAAAA
253 GTCTACCAAGTTTGGGGCCAAAACTCCTTACGAAAAAATTTTAAAAAATC-CCAACC-CTAAAAA
* * *
11511975 GTTTCAAAAATCATG-AAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAA
316 GTTTC-AAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
11512039 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAAATATGAAGATGTG
380 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CAAGAAATATGAAGATGTG
* *** *
11512103 CCTAAACCCACCTACGACCCTATCGATCCACTTTTTGCGCATCCCGTCTCTCTGGCCGACGTAGC
443 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* * * *
11512168 GCCCGCCCACCCGCTTGTCCGCTCG-TTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAG
508 GCCCGCCCGCCCGCCTGCCCG-TTGTTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAG
* *
11512232 TCTAAGATCGAACTGGACCGAGGGTT
572 TCTAAGATCGGACTGGACTGAGGGTT
11512258 GCGATAGCAG
Statistics
Matches: 1295, Mismatches: 155, Indels: 75
0.85 0.10 0.05
Matches are distributed among these distances:
879 9 0.01
880 10 0.01
881 19 0.01
882 3 0.00
883 50 0.04
884 280 0.22
885 277 0.21
886 33 0.03
887 1 0.00
888 4 0.00
889 13 0.01
890 325 0.25
891 269 0.21
892 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (876 bp):
GGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTACAGGTTTG
CTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTACGAAAAAATTTTAAAAAATCCCAACCCTAAAAAGTTTCAAAAT
CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCACAAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
CCTGCCCGTTGTTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACT
GGACTGAGGGTTACGGCAACAGGATCAGTAACACGCAGAGGAGGACTCGATCGATCCCCGGCTTG
CAGATCCCACCCCTCTAGCCGCTGACCGCCAAGATGCATATTGGGGTTGACTTAAGCATACAGAG
TTATTCCCAGTCTAAGCATACAGAGTAATTCCAGTCTCAAGAATCGACCAGATCGAGGGTTAGGA
AGCACATGCTGCGGCTCGGGCATGGCTGGTGCCAAATTTTTCTTCGTCAGCACCATCGTCGGAAA
CATCAGCCGAGACATTGGAGACCGCAGATCA
Found at i:11512765 original size:25 final size:25
Alignment explanation
Indices: 11512731--11512781 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
11512721 TTTGACTTAG
*
11512731 GCATACGAGTTCATTCCTAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
11512756 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
11512781 G
1 G
11512782 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:11514698 original size:26 final size:26
Alignment explanation
Indices: 11514669--11514740 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
11514659 GCGGTCCGAT
11514669 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
11514695 CTTAAACTAGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11514721 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
11514741 TATATGCCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11516407 original size:26 final size:26
Alignment explanation
Indices: 11516363--11516412 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11516353 CGATCTTAGA
* *
11516363 CTGGGAATGAGCTCTGTATGCCTAGT
1 CTGGGAATGAACTCCGTATGCCTAGT
11516389 CTGGGAATGAACTCCGTATGCCTA
1 CTGGGAATGAACTCCGTATGCCTA
11516413 AGTCAACCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (26 bp):
CTGGGAATGAACTCCGTATGCCTAGT
Found at i:11518034 original size:26 final size:26
Alignment explanation
Indices: 11517997--11518048 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11517987 TGATTTGATA
*
11517997 TTAGACTAGGAATGAACACCGTATGC
1 TTAGACTAGGAATGAACACCATATGC
* *
11518023 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACACCATATGC
11518049 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (26 bp):
TTAGACTAGGAATGAACACCATATGC
Found at i:11518937 original size:26 final size:26
Alignment explanation
Indices: 11518886--11518938 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11518876 CTGGTCCGAT
*
11518886 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11518912 CTTAGACTGGGAATGAACTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11518938 C
1 C
11518939 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11520297 original size:896 final size:895
Alignment explanation
Indices: 11517285--11521025 Score: 4877
Period size: 905 Copynumber: 4.2 Consensus size: 895
11517275 ACTCCGTATG
11517285 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC--G-GGCGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGAGCGGGTGGCGGGCGGGC
* * * * *
11517347 ACTACGCTGGCAAGGGAGACGAGATGCGCAAGCTGTGGATCAATAGGGTGGTAGGTGGGTTTAGG
65 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
11517412 CACATCTTCATATATCTACGTGCCAATGCCATTTTTACGG-TTTGTAAATTCATACAATGGTCCC
130 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTT-TAAATTCATACAATGGTCCC
* * *
11517476 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTCGAAAC
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * *
11517541 TTTTTACAGTTCGGGACTTTTCAAAATTTTTGCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACG
259 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACCTGGTAGACG
* *
11517606 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATT
324 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
11517671 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGT
389 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
11517736 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAAT
* * * *
11517801 ATAACGGCCACGTACCAGCGCCCATCGCACATCATGTGCGCACACCCTCCCCGACCCCCCCGATC
519 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCC-CCCCGGCCCCCCCGATC
* * * * * *
11517866 GTCGGAACCCCAATGCCACCGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCGGACGAAG
581 ATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTACCTGG-CGAAG
*** * * * **
11517931 AAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCAT--AACAACCCTCGGTCTGATTTG
645 AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC-TGCCACAACCCTCAGTCTGGTCCG
* * * *
11517994 ATATTAGACTAGGAATGAACACCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
709 ATCTTAGACTGGGAATGAACTCCGAATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
* * *
11518059 CCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
774 CCACGAAACGAGCATGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * ** *
11518124 CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACTGTAACCCTCGGTCCAGTCCTAT
839 CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCATAACCCTCAGTCCAGTCCTAT
* * *
11518181 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGGGGTGGGTGGCCGGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGA---GCGGGTGG-CGGGC
* * *
11518246 GGGCACTACGCCGGCCAGAGAGACGGGATTCGCAAG-TCGTGGATCGATAGGTTGGTTGGTGGGT
61 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT-GTGGATCGATAGGGTGGTAGGTGGGT
* *
11518310 TTAGGCACATCTTCATATTTCTGCGTGCCGATGCCATTTTTATGGCTTTTAAATTCATACAATGG
125 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGG
* * * *
11518375 TCCCTTAAGCCTTCACTTGAAGTTTGATGGCAAGACGACTCGGTTTTTTAATTTTTCATGATTTT
190 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-CCGTTTTCT-ATTTTTCATGATTTT
* * * * *
11518440 TGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTCCAGAAGGAGTTTTTGCCCCAAACTTGG
253 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACCTGG
* * * *
11518505 TAGACGTGATCCCTGTATTTTTTCTGGCATGCACAAAAAAATTCAGCTAAAAAGTTGAAGTGTAC
318 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
11518570 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
383 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
11518635 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT-AGGC
448 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG-
* * * *
11518699 GGCCAATATAAGGGCTAAGTACCAGCACCAATCGCACATCATGTGCGCATACCCCCCGGCCACCC
512 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CCCCCCCGGCCCCCC
* * * * * * * *
11518764 TGATCGTCGGAACCCTAATGCCGTCAGTTAGGTTCTCCGGTGATGCT---TC-A----A--T---
576 CGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTACCTGGC
* * * * * * *
11518816 GAAGAGAAATGCAGCACCAGCACATGCCTGAGCCCAGTAGGTGCGGTCACCACCCTCAGTCTGGT
641 GAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTGGT
* * *
11518881 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTGCATATGCGTAAGTC
706 CCGATCTTAGACTGGGAATGAACTCCGAATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
* ** * * *
11518946 AACCCAC-AGAACGAGCGTGCGGGCGCTTTGCCGACTAGAGGGGCGGGATGCGCAAGCCGGGGAT
771 AACCCACGA-AACGAGCATGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * *
11519010 CGGTCGAGTCCCCCTCCACGTGCAGCCAATCCTGCTACCACAACCCTCAGTCCGGT-CTGAT
835 CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCATAACCCTCAGTCCAGTCCT-AT
* * * *
11519071 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGTGGGCGAGCGGGCCGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACG-AA--A-----CGAGCGGG-TGG
* * * *
11519136 CGGGCGGGCACTACGACGTCCAGAGAGACGGGATGCGGAAGTTGTGGATCGATAGGGTGGTAGGT
56 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGT
*** * *
11519201 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCACTTTTATGGCTTGTAAATTCATACA
121 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACA
* * * * * *
11519266 ATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGATGACTCATTTTTTATTTTTCACGATT
186 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATT
** *
11519331 TTTGAAACTTTTTACGGTTCATGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCCCAAACCT
251 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACCT
* *
11519396 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCAAAGTGT
316 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * * *
11519461 ACAAGATTATGTGACCAATTGAATATAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGC
381 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
11519526 AAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGCTAAGGGATAAG
446 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAG
11519591 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCCCCCC
511 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCCCCCC
* * *
11519656 CGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAGTGATGGTACCTGGC
576 CGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTACCTGGC
* *
11519721 GAAGAAAAATGCAGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGT
641 GAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTGGT
* ** **
11519786 CCAATCTTAGACTGGGAATGAACTCCGAATGCTTAGACTGGGAATGAACTCGGTATGCCTACCTC
706 CCGATCTTAGACTGGGAATGAACTCCGAATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
* * *
11519851 AACCCACGAAACGAGCATGCGGGCGCTCAGTC-GGCCAGAGGGGCAGGACGCACAAGCCGGGGAT
771 AACCCACGAAACGAGCATGCGGGCGCTCAG-CAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * *
11519915 CGGTCGGGT-CCCCTCTATGTGCTGCCGATCCTGCTGCCATAACCCTCAATCCAGT-CTGAT
835 CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCATAACCCTCAGTCCAGTCCT-AT
*
11519975 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAATCGACGAAACGAGCGGGTGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGGTGG-CGGGCGGG
* * * *
11520040 CACTATGCCAGCCAGAGAGACGGGATGTGCAAGCTGTGGATCGATAGAGTGGTAGGTGGGTTTAG
64 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
11520105 GCACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATAAAATGGTCCC
129 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCC
* *
11520170 TTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACCCGTTTTCTATTTTTCACT-ATTTCTGAAA
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCA-TGATTTTTGAAA
* ** * *
11520234 CTTTTTACGGTGCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGACCCCAAACTTGGTAGAC
258 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACCTGGTAGAC
* * *
11520299 GTGATCCTTGTATTTTTTTTGGCATCCAAAAAAAAAATTCAGCTAAAAACGCGAAGTGTACAAGA
323 GTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
11520364 TTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACAT
387 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
11520429 GTAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAGGAGGGATAGGGGGCCA
452 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
* * * *
11520493 ATA-ATGGGCGAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGACCCCCCGAT
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCC-GGCCCCCCCGAT
* * * * *
11520557 CACCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCTGACGAA
580 CATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT-ACCTGGCGAA
* * * *
11520622 GAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCACTCCGGTCCG
644 GAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTGGTCCG
* * * * * *
11520687 ATTTTACACTGAGAATGAACTTC-ATATGCTTAG-CTGGGAATGACCTCCGTATGCCTAAGTCAA
709 ATCTTAGACTGGGAATGAACTCCGA-ATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
* * * * * ** *
11520750 CCCATGAAATGAGCATGCGAGCGCTCAGCAGGCCAAAGTGGCGGGATGCGCAAGTTGGGGATTGG
773 CCCACGAAACGAGCATGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * * * **
11520815 TCGGGTCCCCTTCTGCATGCTGCCGATGCTGCTGCCGTAACCCTCGGTCTGGTCCTAT
838 TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCATAACCCTCAGTCCAGTCCTAT
* * *
11520873 CTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACTGACGAAATGAGC---AGGCGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGAGCGGGTGGCGGGCGGGC
* * * *
11520935 ACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGG
65 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
11521000 CACATCTACATATTTCTGCATGCCAA
130 CACATCTTCATATTTCTGCATGCCAA
11521026 ACTTGGTAGA
Statistics
Matches: 2479, Mismatches: 311, Indels: 112
0.85 0.11 0.04
Matches are distributed among these distances:
889 40 0.02
890 216 0.09
891 2 0.00
892 54 0.02
893 291 0.12
894 99 0.04
895 201 0.08
896 379 0.15
897 242 0.10
898 179 0.07
899 4 0.00
900 2 0.00
901 2 0.00
902 4 0.00
903 204 0.08
904 94 0.04
905 464 0.19
906 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACGAAACGAGCGGGTGGCGGGCGGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTT
TTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTG
ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCCCCCCCGATCATCGG
AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTACCTGGCGAAGAAAAAT
GCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAG
ACTGGGAATGAACTCCGAATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
ACGAGCATGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
CCCTCTACGTGCTGCCGATCCTGCTACCATAACCCTCAGTCCAGTCCTAT
Found at i:11521446 original size:26 final size:25
Alignment explanation
Indices: 11521417--11521468 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
11521407 CCGATCTGAT
*
11521417 CTTAGATTGGGAATGCACTCCGTATG
1 CTTAGATTGGGAATGAACTCC-TATG
11521443 CTTAGATTGGGAATGAACTCCTATG
1 CTTAGATTGGGAATGAACTCCTATG
11521468 C
1 C
11521469 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (25 bp):
CTTAGATTGGGAATGAACTCCTATG
Found at i:11521690 original size:728 final size:731
Alignment explanation
Indices: 11520284--11521753 Score: 2044
Period size: 728 Copynumber: 2.0 Consensus size: 731
11520274 AGTTTTGACC
*
11520284 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATCCAAAAAAAAAATTCAGCTAAAAAC
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATCCAAAAAAAAAATTCAGCTAAAAAC
* *
11520349 GCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
66 GCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
11520414 ACTGGCAGCAAACATGTAAAACTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAGGA
131 ACTGGCAGCAAACATGTAAAACTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAGGA
* * *
11520479 GGGATAGGGGGCCAATAATGGGCGAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
196 GGGATAGGGGGCCAATAAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCC
* * * *
11520544 TCGACCCCCCGATCACCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
261 TCGACCCCCCGATCACCGGAACCCCAATGCCGCCAGTCAGGTTCT----C-A--CTCCGACGATG
* * * *
11520609 GTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCC
319 GTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCACAACCC
* * * *
11520674 TCACTCCGGTCCGATTTTACACTGAGAATGAACTTCATATGCTTAGCTGGGAATGACCTCCGTAT
384 TCACTCCGATCCGATCTTACACTGAGAATGAACTCCATATGCTTAGCTGGGAATGAACTCCGTAT
* *
11520739 GCCTAAGTCAACCCATGAAATGAGCATGCGAGCGCTCAGCAGGCCAAAGTGGCGGGATGCGCAAG
449 GCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCTCAGCAGGCCAAAGTGGCGGGATGCGCAAG
* * * * * * * * * * *
11520804 TTGGGGATTGGTCGGGTCCCCTTCTGCATGCTGCCGATGCTGCTGCCGTAACCCTCGGTCTGGTC
514 CTGAGGATCGGCCGAGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGGTCTGATC
* * *
11520869 CTATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACTGACGAAATGAGCAGGCGGGCGGG
579 CTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGG
* * * *
11520934 CACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTG-GGTTTA
644 CACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGG-TAA
11520998 GGCACATCTACATATTTCTGCATG
708 GGCACATCTACATATTTCTGCATG
* * * *
11521022 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAATTTTAGCTAAAAAC
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATCCAAAAAAAAAATTCAGCTAAAAAC
*
11521086 TCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
66 GCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
11521151 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
131 ACTGGCAGCAAACATGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAGG
11521216 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCC
195 AGGGATAGGGGGCCAATA-AAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCC
* *
11521281 CCTCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGG-T-T-A-TCCGACGATGGTGCC
259 CCTCGACCCCCCGATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCACTCCGACGATGGTGCC
* ** **
11521342 CCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGT
324 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCACT
* * * * * * *
11521407 CCGATCTGATCTTAGATTGGGAATGCACTCCGTATGCTTAGATTGGGAATGAACTCC-TATGCCT
389 CCGATCCGATCTTACACTGAGAATGAACTCCATATGCTTAG-CTGGGAATGAACTCCGTATGCCT
* * * * *
11521471 AAGTCAACCCACGTAACGAGCGTGC-AGATGCTCAGCCGGCCAGAG-GGACGGGATGCGCAAGCT
453 AAGTCAACCCACGAAACGAGCATGCGAG-CGCTCAGCAGGCCAAAGTGG-CGGGATGCGCAAGCT
* ** *
11521534 GAGGATCGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTACTATGGCAACCCTC-GTTTCGAT-C
516 GAGGATCGGCCGAGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGGTCT-GATCC
* * *
11521597 TGATCTTAGATTGGGAATGAACTCCGTATGCGTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
580 T-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGG
* *
11521662 CACTACGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGGTAAG
644 CACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGGTAAG
* *
11521727 GCACATCTTCATATTTCTGCGTG
709 GCACATCTACATATTTCTGCATG
11521750 CCAA
1 CCAA
11521754 TGCCATTTTT
Statistics
Matches: 648, Mismatches: 76, Indels: 26
0.86 0.10 0.03
Matches are distributed among these distances:
727 9 0.01
728 340 0.52
729 15 0.02
731 1 0.00
737 102 0.16
738 100 0.15
739 81 0.12
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.22
Consensus pattern (731 bp):
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATCCAAAAAAAAAATTCAGCTAAAAAC
GCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACATGTAAAACTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAGGA
GGGATAGGGGGCCAATAAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCC
TCGACCCCCCGATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCACTCCGACGATGGTGCCCC
GACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCACTCC
GATCCGATCTTACACTGAGAATGAACTCCATATGCTTAGCTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCATGCGAGCGCTCAGCAGGCCAAAGTGGCGGGATGCGCAAGCTGAGGA
TCGGCCGAGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGGTCTGATCCTATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTACG
CCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGGTAAGGCACATC
TACATATTTCTGCATG
Found at i:11522749 original size:897 final size:885
Alignment explanation
Indices: 11521022--11524100 Score: 4073
Period size: 897 Copynumber: 3.5 Consensus size: 885
11521012 TTTCTGCATG
* *
11521022 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTTAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
11521087 CGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
11521152 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
11521217 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * *
11521282 CTCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAG----G-TTATCCGACGATGGTGCC
261 C-CGACCCCCCGATCGCCGGAA-CCCAATGCCACCGGTCAGTTTAGATTCTCCGACGATGGTGCC
* * *
11521342 CCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGT
324 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCGACCGCAACCCTCGGT
* * * * * * * *
11521407 CCGATCTGATCTTAGATTGGGAATGCACTCCGTATGCTTAGATTGGGAATGAACTCCTATGCCTA
389 CTGGTCGGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCGTATGCCTA
* * * * * *
11521472 AGTCAACCCACGTAACGAGCGTGCAGATGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGCTGAG
454 AGTCAACCCACGAAACGAACGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAG
* * *
11521537 GATCGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTACT-ATGGCAACCCTCGTTTCGATCTGAT
519 GATCGGCCG-GTCCCCCTCTGCGTGCTGCCGATCCTACTGCT-GCAACCCTCG-ATCGATCTAAT
* *
11521601 CTTAGATTGGGAATGAACTCCGTATGCGTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
581 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * * *
11521666 ACGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGG-TAAGGCA
646 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTG-GGTTTAGGCA
*
11521730 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
710 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
11521795 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
775 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTT
* *** *
11521860 TTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAAATTTGGCC
840 TTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCC
* *
11521906 CCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
11521971 CGAAGTGTACAAGATTTTCTGACCATTTGAAAAAACTGTCCCCATGTCAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
11522036 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTAGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
11522101 GGGATACGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CC
*
11522166 CCCCCGACCCCACCGATCGTCC-GAACGCCAATGCCACCGGTCAGTTCTCCGACGATGCTCCGAC
258 CCCCCGACCCC-CCGATCG-CCGGAAC-CCAATGCCACCGGTCAGTT-T---A-GATTCTCCGAC
* * * * *
11522230 GGTGGTGCCCCGATGAA-AAAAATGTGGCACCAACACTTGCCCGAGCCCAGCATGTGCGGCCGCA
315 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCGACCGCA
11522294 ACCCTCGGTCTGGTCGGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTG
380 ACCCTCGGTCTGGTCGGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT-
* *
11522359 CGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGACGC
444 CGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGC
** * * * *
11522424 GCAAGCCGAGGATCGATCGGTTCCCCCTCTGCATGCTGTCGATCCTGCTGCTGCAACCCTTGATC
509 GCAAGCCGAGGATCGGCCGG-TCCCCCTCTGCGTGCTGCCGATCCTACTGCTGCAACCCTCGATC
*
11522489 CAGT-TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
573 GA-TCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
*
11522553 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGG
636 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGG
11522618 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCATT-TAAATTCATACAA
701 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC-TTGTAAATTCATACAA
*
11522682 TGGTCCCTTAAGCCTTCACGTGGAA-ATTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATT
765 TGGTCCCTTAAGCCTTCACGT-GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATT
** **
11522746 TTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGCGTTTTGGCC
829 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCC
* *
11522803 CCAAA-TAGGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTTTAGCTAAAAA
1 CCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAA
* * *
11522866 TTCGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGC
64 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * *
11522931 TACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGTT
129 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
11522996 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-CACA-CC
194 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
*
11523059 CCCCGACCCTCCCGATCGCCGGAACCCCATGCCACCGGTCAGGTTCTCCGACGATTCTCTGGCGA
259 CCCCGACCC-CCCGATCGCCGGAACCCAATGCCACCGGTCA-GTT-T---A-GATTCTC---CGA
*
11523124 TTCTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCATGT
314 -----C-G--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGT
* *
11523189 G-GTGCCG-AA-AC-C---CT--T-GG-TC-----C---G-AT---CT--A-AT-CTTAGACTTG
371 GCG-ACCGCAACCCTCGGTCTGGTCGGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TG
* * *
11523227 GG-ATGAACTCCGTATGCCTAAGTCAACTCACAAAAACGAACGTGCGGGTGCTCAGCCGACCAGA
434 GGAATGAACT-CGTATGCCTAAGTCAACCCAC-GAAACGAACGTGCGGGTGCTCAGCCGGCCAGA
* * * * *
11523291 GGGGCAGGATGCGCAAGCCG-GGAATTGGCCGGGGCCCCCTCTGCGTGCTACCGATCCTACTGCC
497 GGGGCGGGATGCGCAAGCCGAGG-ATCGGCC-GGTCCCCCTCTGCGTGCTGCCGATCCTACTGCT
* *
11523355 GTAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
560 GCAACCCTCGATC-GATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-
* * * * * *
11523420 ACCGAACGGGCGGGCGGGCGGGCACTATG-GGGATCAGAGAGACGAGATTCGCAAGCCGTGAATC
623 A---AACGAGCGGGCGGGCGGGCACTACGCCGG-CCAGAGAGACGGGATGCGCAAGCCGTGAATC
*
11523484 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGC
684 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
*
11523549 TTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
749 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** *
11523614 CTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGACT
814 CTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAAT
11523679 TTTGGCC
879 TTTGGCC
* *** * *
11523686 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTAAAATGCACAAAAACATTCAGCTAAAAAAT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * *
11523751 CAAAATGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
11523816 CTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
11523881 GGGATAGGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCACACATCATGTACGCACACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * **
11523946 CCGGCCCCCCCGATCGTCGGAACCCTAA---CGCC-GTC-GTTTAGGTTCTCCGGTGATGGTGCC
261 CC-GACCCCCCGATCGCCGGAACCC-AATGCCACCGGTCAGTTTAGATTCTCCGACGATGGTGCC
** * * * * * *
11524006 CCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTATCACAACCCTCGGT
324 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCGACCGCAACCCTCGGT
*
11524071 CTGGTCGGATCTTAGACTGTGAATGAACTC
389 CTGGTCGGATCTTAGACTGGGAATGAACTC
11524101 TGCATGCCTA
Statistics
Matches: 1941, Mismatches: 169, Indels: 167
0.85 0.07 0.07
Matches are distributed among these distances:
864 51 0.03
865 2 0.00
866 2 0.00
867 1 0.00
870 2 0.00
872 3 0.00
873 2 0.00
874 2 0.00
875 6 0.00
876 1 0.00
878 36 0.02
879 141 0.07
880 8 0.00
882 13 0.01
883 460 0.24
884 254 0.13
885 24 0.01
886 15 0.01
887 31 0.02
888 2 0.00
889 1 0.00
891 17 0.01
892 38 0.02
893 1 0.00
894 2 0.00
895 5 0.00
896 121 0.06
897 631 0.33
898 8 0.00
900 1 0.00
901 2 0.00
902 1 0.00
903 17 0.01
904 40 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CCGACCCCCCGATCGCCGGAACCCAATGCCACCGGTCAGTTTAGATTCTCCGACGATGGTGCCCC
GACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCGACCGCAACCCTCGGTCT
GGTCGGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCGTATGCCTAAG
TCAACCCACGAAACGAACGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGA
TCGGCCGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCTGCAACCCTCGATCGATCTAATCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGG
TTCGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCC
Found at i:11525179 original size:25 final size:26
Alignment explanation
Indices: 11525129--11525180 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11525119 TCCGATCGAT
11525129 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11525155 CTTAGACTGGGAATG-ACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11525180 C
1 C
11525181 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11526060 original size:26 final size:26
Alignment explanation
Indices: 11526028--11526080 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11526018 CCGGTTCGAT
* * *
11526028 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
11526054 CTTAGACTGAGAATAAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
11526080 C
1 C
11526081 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCGTATG
Found at i:11526723 original size:895 final size:893
Alignment explanation
Indices: 11524211--11527866 Score: 4690
Period size: 897 Copynumber: 4.1 Consensus size: 893
11524201 CTGCCGATCC
* * * *
11524211 TGCTGCCGCAACCCTCGGTCCAG-TCTTATCTTAGACTGGGAATGAACTCCGTATGCTTTGACTG
1 TGCTGCCGCAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
11524275 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAGCGAGCATACGGGTGCTCAGCTGGCCAGAG
65 GGAAT-AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
* ** *
11524340 GGGCGGGATACGCAAGTCGGGGATCGACCGGGT-CCCCCCTGCGTGCTACCGATCTTGCTGCTGC
129 GGGCGGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCGTGCTACCGATCCTGCTGCTGC
* * ** * * * *
11524404 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTACGCCAACAGACGAA
194 AACCCTCAGTCCGGTCCAATCTTACACTAGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAA
* * * **
11524468 ACGA----GTGGGCGGGCACTACGTTGGCCAGAGAGATAGGATGCGCAAGCCGTGGATCGATAGG
258 ACGAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
11524529 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAAGGCTTGTAA
323 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * * * *
11524594 ATTCATACAATGGTCTCTTAAGACTTCACGTGAAGTTTCAAGGCAAGATGACTCGTTTTATATTT
388 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* ** * * * *
11524659 TTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAACTTTTTTTGGAAGGGGTATTGGC
453 TTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
11524724 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAA
518 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
11524789 TCGAAGTGTATAAGTTTTTGTGACCATATGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
583 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
11524854 ACTGGTAGCAAACCTATAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
648 ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
11524919 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
713 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * *
11524984 CCCGACCCCCTCGATTGCCGGAACCCCAATG-TCGCCAATCAGGTTCT-CGACGATGCTCCGGTG
778 CCGGGCCCCC-CGATCGCCGGAA-CCCAATGCT-GCCAATCAGGTTCTCCGACGATGCTCCGGCG
*
11525047 ATGGTGGCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
840 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* * *
11525101 TGCTGCCGTAACCCTCGGTCC-GATCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
11525165 GAATGACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCTTTCGGGTGCTCAGCCGGCCAGAGGG
66 GAATAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * ** * *
11525230 GCGGGATGA-GCAAGCGGGGGATCGGTCGGGTCCCCCCCTGCATGCTGTCGATCCTACTGCCGCA
131 GCGGGAT-ACGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCGTGCTACCGATCCTGCTGCTGCA
** * ** * **
11525294 ACCCTTGGTCTGGTCTGATCTTACACTAGGAATGAACTCTGTATGCCAAAGCCAACCGATAAAAC
195 ACCCTCAGTCCGGTCCAATCTTACACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC
*
11525359 GAGCAGGCGAGCGGGCGGGCACTACGTC-AGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGAT
260 GAGC--G-G-GCGGGCGGGCACTACGTCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
11525423 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTG
320 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
*
11525488 TAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
385 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * *
11525553 TTTTTCATGATTTTTGAAACTTTTTACGATTAAGCATTTTTTAAAATTTTTTCGGGAGGAGTTTT
450 TTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* *
11525618 GGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
515 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAA
* *
11525683 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTAATT
580 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
11525748 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
645 GCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
11525813 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGAACCCATCGCACATCATGTGCGCACAC
710 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
* * ** *
11525878 CCCCCCGGGCCCCCCGATCACCGGAACGCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGA
774 CCCCCCGGGCCCCCCGATCGCCGGAAC-CCAATGCTGCCAATCAGGTTCTCCGACGATGCTCCGG
* *
11525943 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATG
838 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
** * *
11525999 TGCTGCCGCAACTGTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGA
1 TGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
11526064 GAATAAACTCCGTATGCCTAAGTCAACCCACGATACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
66 GAAT-AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
** * **
11526129 GGCGGGATACGCAAGCCGGGGATCGGTCGGGTCCCCTTCTACGTGCGGCCGATCCTGCTGCTGCA
130 GGCGGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCGTGCTACCGATCCTGCTGCTGCA
* * * *
11526194 ACCCTCATTCCAGTCCAATTTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC
195 ACCCTCAGTCCGGTCCAATCTTACACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC
* *
11526259 GAGCGGGCGGGCGAGCACTACGTCGACTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
260 GAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
11526324 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
325 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
** * *
11526389 TTGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTT
390 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * *
11526454 CATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTT-AAATTTTTTTGGAAGGAGTTTTGGGCC
455 CACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
*
11526518 CAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTC
520 CAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
11526583 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
585 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
11526648 TGGCAGCAAACCTATAGAATCTCAAATGCTTTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAG
650 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * ** *
11526713 GAATAGGGGGCCAATATAAGGGCCAAGCAAGAGCACCCATCGCACATCATGTGCG--CACCCCCT
715 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * ** **
11526776 GGCCCCCCCGATCGTCGAAACCTCAATGCTGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGG
780 GGGCCCCCCGATCGCCGGAACC-CAATGCTGCCAATCAGGTTCTCCGACGATGCTCCGGCGATGG
* * * * *
11526841 TGCCCCGGCGAAGAAAAATACGACACCAACACATGCCTGAGCCCGGCATG
844 TGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* *
11526891 TGCTGCCGCAACCCTCAGTCCGGTCCGATCGTAGACT-GG---G-A------ATG---A-AC---
1 TGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
*
11526938 ---T--CT--GTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
66 GAATAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * * * * * *
11526996 GCGGGATGCGCAAGCTGGGGATCGG-CTGGGTCCCCCTCTGCGTGCTATCGATTCTGCT-ATCAC
131 GCGGGATACGCAAGCCGGGGATCGGTC-GGGTCCCCCCCTGCGTGCTACCGATCCTGCTGCT-GC
* * * * * *
11527059 AACCCTTCA-TCCGATGCAATCTTACACTGGGAATGAACTCCGTATGCCTAACCCATCCGACGAA
194 AACCC-TCAGTCCGGTCCAATCTTACACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACG-A
* * * *
11527123 ACGAGCGAACGGTCGGGCGGGGTGGGCGGGCACTATGCCAACCAGAGAGACGGGATGCACAAGCC
257 A--A-CG-A--G-CGGGC-----GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCC
* * * *
11527188 GTGGATCAATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTTTGCATTCCAATGCCATTT
310 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
11527253 TTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGAC
375 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
11527318 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCG
440 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCG
* * * * * * * *
11527382 AAAGGATTTTTGGCCCCAAACTTGATAGTCGTTATCCTTGTAATTTTCTTGGCATCCACAAAAAA
504 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAA
* * * * *
11527447 ACTCAACTAAAAACTCGAAGTGTATAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
569 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
11527512 ACACTTTAATTGCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
634 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
11527577 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
699 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *** *
11527642 TGTGCGTACA-CCCCCTGGCCCCCCGATCTTTGGAACCCTAATGCCGCCAATCAGGTTCT-C--C
764 TGTGCGCACACCCCCCGGGCCCCCCGATCGCCGGAACCC-AATGCTGCCAATCAGGTTCTCCGAC
* * *
11527703 GA--------CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACAGATGCTCGAACCCAGCAT
828 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCAT
11527760 G
893 G
* *** * * * ** * * *
11527761 TTCTATTGTAACCTTCGGTCTAG-CCTGATCTTAGACTGTGAATGAACTCCGTATGCTTAAACTG
1 TGCTGCCGCAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
11527825 GGAATGAAATCTGTATGCCTAAGCCAACCGACGAAACGAGCG
65 GGAAT-AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
11527867 GGTGGACGGG
Statistics
Matches: 2433, Mismatches: 263, Indels: 134
0.86 0.09 0.05
Matches are distributed among these distances:
865 2 0.00
866 150 0.06
867 5 0.00
868 2 0.00
869 3 0.00
870 74 0.03
871 3 0.00
873 1 0.00
874 6 0.00
875 1 0.00
877 2 0.00
878 4 0.00
879 205 0.08
880 252 0.10
881 44 0.02
882 2 0.00
884 1 0.00
885 2 0.00
887 1 0.00
888 80 0.03
889 126 0.05
890 23 0.01
891 4 0.00
892 136 0.06
893 2 0.00
894 1 0.00
895 258 0.11
896 239 0.10
897 498 0.20
898 96 0.04
899 45 0.02
900 165 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
TGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
GCGGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCGTGCTACCGATCCTGCTGCTGCAA
CCCTCAGTCCGGTCCAATCTTACACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACG
AGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
ACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
AAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
GGCCCCCCGATCGCCGGAACCCAATGCTGCCAATCAGGTTCTCCGACGATGCTCCGGCGATGGTG
CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
Found at i:11527829 original size:26 final size:26
Alignment explanation
Indices: 11527790--11527842 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11527780 CTAGCCTGAT
* * *
11527790 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAAATCCGTATG
*
11527816 CTTAAACTGGGAATGAAATCTGTATG
1 CTTAAACTGGGAATGAAATCCGTATG
11527842 C
1 C
11527843 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAAATCCGTATG
Found at i:11529449 original size:26 final size:26
Alignment explanation
Indices: 11529420--11529472 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11529410 CCGGTCCGAT
*
11529420 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
11529446 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
11529472 C
1 C
11529473 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:11530195 original size:26 final size:26
Alignment explanation
Indices: 11530159--11530211 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11530149 CTGATCTAAT
*
11530159 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11530185 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11530211 C
1 C
11530212 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11530277 original size:735 final size:734
Alignment explanation
Indices: 11528724--11530235 Score: 2346
Period size: 735 Copynumber: 2.1 Consensus size: 734
11528714 AGATCGAGAT
11528724 TGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCAGGCACTACGTCGGCCAGAG
1 TGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCA-GCACTACGTCGGCCAGAG
11528789 AGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAATCACATCTTCATATTTC
65 AGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAATCACATCTTCATATTTC
11528854 TGTGAGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
130 TGTGAGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *
11528919 GTTTAATGGCAGAACAACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGATCAGAAT
195 GTTTAATGGCAGAACAACTCATTATCTATTTTTCACAATTTTCAAAACTTTTTACGGATCAGAAT
* *
11528984 TTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCCAAACTTGGTAAACATGATCCTTGTATTTTTG
260 TTTTTAAATTTTTTCGAAAGGAGTTTTGGCCCCCAAACTTGGTAAACATGATCCTTGTATTTTTG
* ** * * *
11529049 TTGGCATGCACAAAAAAATCAGCTAAAACCTCAAAGTGTGCAAGATTTTGTTATCGTTTGAAAAA
325 TTGGCATGCACAAAAAAATCAGCTAAAAACTCAAAGTGAACAAGATTTTGTGACCATTTGAAAAA
* *
11529114 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
390 AGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTT
* *
11529179 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAG
455 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAACATAAGGGCCAAGAACCAG
* * * *
11529244 CACCCATCGCACATCTTGTGTGCACACCCCCCCGGCCCCCCGATCACCGAAACCGCAATGCTGCC
520 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGAAACCCCAATGCCGCC
*
11529309 AGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACA
585 AGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACA
** * * * * *
11529374 TGTTCGATCCCAGCATGTGCTGCTACAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACT
650 TGCCCGAGCCCAACATGTGCTACTACAACCCTCGGTCCGATCCAATCTTACACTGGGAATGAACT
11529439 TCGTATGCTTAGACTGGGAA
715 TCGTATGCTTAGACTGGGAA
*
11529459 TGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCAGGCACTACGCCGGCCAGAG
1 TGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCA-GCACTACGTCGGCCAGAG
11529524 AGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAATCACATCTTCATATTTC
65 AGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAATCACATCTTCATATTTC
11529589 TGTGAGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
130 TGTGAGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * * ** * * *
11529654 GTTTCATTGCA-AACCAACTCCTTATCTATTTTTCATAATTTTTGAAACTTTTTACGGTTTAGGA
195 GTTTAATGGCAGAA-CAACTCATTATCTATTTTTCACAATTTTCAAAACTTTTTACGGATCAGAA
* *
11529718 TTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTT
259 TTTTTT-AAATTTTTTCGAAAGGAGTTTTGGCCCCCAAACTTGGTAAACATGATCCTTGTATTTT
* * *
11529782 TGTTGGCATGCACATAACAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATTTGAA
323 TGTTGGCATGCACA-AAAAAATCAGCTAAAAACTCAAAGTGAACAAGATTTTGTGACCATTTGAA
* *
11529847 AAAAGTGTCCTCATTTAAGACACTTTAATGGCTACTGGCAGCAAAACCTGTAAAATGTCAAATGC
387 AAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGC-AAACCTGTAAAATCTCAAATGC
** * *
11529912 ACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAACATAAGGGTCAAGTA
451 ACTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAACATAAGGGCCAAGAA
* * ** *
11529977 CCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCCGGCCTCCTGATCGTCGGAACCCCAAT
516 CCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCCGGCCCCCCGATCACCGAAACCCCAAT
**
11530042 GCCGCCTA-TCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATATGGCAC
579 GCCGCC-AGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACAGCAC
* ** * * *
11530106 TAGCACATGCCCGAGCCCAACATGTGCTACTGTAACCCTCGGTCTGATCTAATCTTAGACTGGGA
643 CAGCACATGCCCGAGCCCAACATGTGCTACTACAACCCTCGGTCCGATCCAATCTTACACTGGGA
11530171 ATGAACTTCGTATGCTTAGACTGGGAA
708 ATGAACTTCGTATGCTTAGACTGGGAA
* * *
11530198 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
1 TGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCG
11530236 TGCGGGCGCT
Statistics
Matches: 706, Mismatches: 64, Indels: 10
0.91 0.08 0.01
Matches are distributed among these distances:
734 2 0.00
735 294 0.42
736 103 0.15
737 107 0.15
738 4 0.01
739 195 0.28
740 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (734 bp):
TGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCAGCACTACGTCGGCCAGAGA
GACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAATCACATCTTCATATTTCT
GTGAGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTAATGGCAGAACAACTCATTATCTATTTTTCACAATTTTCAAAACTTTTTACGGATCAGAATT
TTTTAAATTTTTTCGAAAGGAGTTTTGGCCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGT
TGGCATGCACAAAAAAATCAGCTAAAAACTCAAAGTGAACAAGATTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTT
AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAACATAAGGGCCAAGAACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGAAACCCCAATGCCGCCA
GTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACAT
GCCCGAGCCCAACATGTGCTACTACAACCCTCGGTCCGATCCAATCTTACACTGGGAATGAACTT
CGTATGCTTAGACTGGGAA
Found at i:11531091 original size:26 final size:26
Alignment explanation
Indices: 11531062--11531114 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11531052 CTGATCCGAT
*
11531062 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11531088 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11531114 C
1 C
11531115 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11531358 original size:903 final size:901
Alignment explanation
Indices: 11529446--11538125 Score: 10690
Period size: 903 Copynumber: 9.7 Consensus size: 901
11529436 ACTTCGTATG
*
11529446 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGC--G-GGC-A---GGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGAGCGGGC
* *
11529504 AGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** * *
11529569 TAATCACATCTTCATATTTCTGTGA-GCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGG
131 TAGGCACATCTTCATATTTCTG-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * **
11529633 TCCCTTAAGCCTTCACGTGAAGTTTCATTGCAA-ACCAACTCCTTATCTATTTTTCATAATTTTT
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-CGACTCGTTTTCTATTTTTCACGATTTTT
* *
11529697 GAAACTTTTTACGGTT-TAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
259 GAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
11529761 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACATAACAATTCAGCTAAAAACTCGAAGTGAAC
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* *
11529826 AAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTAAGACACTTTAATGGCTACTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-A
* * * *
11529891 AACCTGTAAAATGTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
11529956 GGCCAACATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCCGGCCT
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCCGGCCC
* * ** **
11530021 CCTGATCGTCGGAACCCCAATGCCGCCTATCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCC
580 CCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
** * * * * *
11530086 GACGAAGAAAAATATGGCACTAGCACATGCCCGAGCCCAACATGTGCTACTGTAACCCTCGGTCT
645 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-GGTCT
** *
11530151 GATCTAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
709 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
11530216 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCGGGATGCACAAGCCGGGG
774 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* ** ** * *
11530281 AACAACTTGGTCCCCCTCTGCGTGCTGCCGATCCT-ATCACCGCAACCCTC-AGTCTGGTCTGAT
839 ATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-ACCGCAACCCTCGATTC-GGTCTGAT
* *
11530344 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGCGGGCGGAC-AGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGA-GCGG
* *
11530408 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
64 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
11530473 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAGTTTTATGGATTGTAAATTCATACAATG
129 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
11530538 GTCCCATAAGCCTTCACGTGAAGTTTCATGGCAGGCCAACTCGTTTTCTATTTTTCACAATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
11530603 GAAACTTTTTACGGTTCGAGATTTTTTCAAATTTTTT-GCAAAGGATTTTTGGCCCCAAACTTGG
259 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCCAAACTTGG
* * *
11530667 TAGACGTGATCCTTGTATTCTTT-TTGCCATGCTCAAAAAAATTCAGCTAAAAACTCGAAGTGTA
323 TAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
* *
11530731 CAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCA
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
11530796 AACCTGTAAAATGTCAAACGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
11530861 GGCCAACATAAGGGTCAAGTACCAGCACCAATCGCACATGATGTGCGCACACCCCCCCGGCCCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * *
11530926 CGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCGGCAATGGTGCCCC-A
582 CGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* * * ** *
11530990 GTGAAGAAAAATGCGGTACCAGCACATGCTCGAGCCTTGCATGTGCAGCCGCAACCCATGGTCTG
647 -CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TGGTCTG
*
11531055 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
710 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * * *
11531120 TTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCAGAGGGGCGGGATGTGCAAGTCGAGGA
775 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
** * ** * * **
11531185 TCAACCGGGTCCCCTTCTATGTGCTGTCGATCCTGCTACCGTAACCCTCGATTCGGTCAAAT
840 TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATTCGGTCTGAT
* * * * *
11531247 CTTAGACTGAGAATGAACTCTGTATGCCTAAACCAACCGACGAAATGAGCGGGTGGACGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGAGCGGG
*
11531312 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * **
11531377 CTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
11531442 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACACGTTTTTTATTTTTAACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
11531507 AAACTTTTTGCGGTTTTG-GATTTTTTAAAATTTTTTCGAAAGAAGTTTTGGCCCCAAACTTGGT
260 AAACTTTTTACGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
11531571 AGACGTGATCCTTGTATTTTTGTTGGAATGTACAAAAACATTCAGCTAAAAAGTCAAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
*
11531636 AGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
11531701 CTTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
11531766 CCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGTGCACACCCCCCCGGCCCCCCT
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-
* * * * * *
11531831 GATCATCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGACGATG-ACCTAGCGACGGTGCCCCGA
583 GATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGA
** * *
11531895 CGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCC---TC-G--
647 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTGGTCTGAT
* *
11531954 --G---TT----T--G---G---TCC-AAT-CTTAGACTGGGAATTAACTCCGTATGCCTAAGTC
712 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
11532000 AACCCATGAAACGAGCGTACAGGTGCTCAGTCGGCCAGAGGGGCGAGATGCGCAATCCGGGGATC
777 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * **
11532065 GGGCGGGTCGCGCTCTGCGTGCTACCGATCCTACTGCCGCAACCCTCTGGCT-GGTCTGAT
842 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTC-GATTCGGTCTGAT
* ** * * *
11532125 CTTAGACTGGGAATAAACTCCGTATGTGTAAGCCAACCGATGAAACGAGCGGGTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-CGGCGAGCGGG
* * * **
11532190 CGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCTGTGTATCGATAGGGCAGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
11532255 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* **
11532320 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
11532385 AAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTAGGT
260 AAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
11532449 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
*
11532514 AGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
11532579 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
11532644 CCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATTTGCGCACA-CCCCCCGACCCCCTG
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * * * * * * *
11532708 ATCACCGGAACACCAATGCCGCCGGTCAAGTTTTCTGGCGATGCTCCGACGATGGTGCCCTGGCA
584 ATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
* * *
11532773 AAGAAAAATACGGCATCGGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC---T-TG----
649 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTGGTCTGATCC
* *
11532830 G-TC-----C--GG--T---CT--G-AT-CTTAGACTGGGAATCAACTCTGTATGCCTAAGTCAA
714 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * ** *
11532878 CCCATGGAACGAGCATGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGACGATCGA
779 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * *
11532943 TCGGGTTCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCATCGA-TCTGGTCTGAT
844 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATTC-GGTCTGAT
* * * *
11533001 CTTAGACTAGGAATGAGCTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGAGCGGG
* * * * * * *
11533066 CGGGCAATACGCCAGCCAGAGAGACGGGTTGCGCAAGCCATGGATCGATAGGATGGTAGGAGGCT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
11533131 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
11533196 TCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * * * *
11533261 AAACTTTTTATGGTTTGAAATTTTTTAATATTTTTTTGGAAGGAGTTTTCGTCCCAAACATGGTA
260 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
11533326 GACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
11533391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
11533456 CTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATA-AGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
11533520 CAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCTCACCCCCCCGACCCCCCCG
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCG
* * * * * *
11533585 ATCTTCGAAACCGCATTGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
584 ATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
**
11533650 AAGAAAAATGCGAAACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCT-AGT
649 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TGGTCTGA-T
* *
11533714 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTC
712 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * * * * * *
11533779 AACACATGAAATGAACGTACGGGTGCTCAGCCAGCCAGAGTGGCAGGATGTGCAAGCCAGGGATC
777 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
** * * * * * * *
11533844 GATCGGGTCCCCCTCTACGTGCTGCCAATCTTGCTACCACATCCCTCCG-TCCGATCTGAT
842 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCT-CGATTCGGTCTGAT
* * * * *
11533904 CTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGATGGAACGAGCGGGCAGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGAGCGGG
* * * *
11533969 CGGGCACTACACCGGGCAGAGAGATGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
11534034 TTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
11534099 GCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
11534164 AAACTTTTTGCAGTGT-GGGATTTTTTAAAATTTTTTCGGATGGTGTTTTGGCCCCAAACTTGGT
260 AAACTTTTTACGGT-TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * * *
11534228 AGACATGATCCTTGTATTTTTGTTGGCAGGTAAAAAAAAATTCAGCTAAAAAGTCGAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
11534293 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
11534358 CCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATA-AGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
11534422 CCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCTCACCCCCCCGACCCCCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCC
* * * * * *
11534487 GATCTTCGAAACCGCATTGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
583 GATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
* * *
11534552 GAAGAAAAATGCGGCACCAG--CAT------G---TGC-TGT--T---GCAACCCTCGGTCCGGT
648 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-GGTCTGAT
* * *
11534600 CTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACCCCGTATGCCTAAGTC
712 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
11534665 AAACCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACGAGTCGGGGATC
777 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
** * * *** * * * **
11534730 GGTTGGGTGCCCCTCTGTGTGCTATTGATCCTCCTGCCGCAACCCTTGGGTCGGTCTGAT
842 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATTCGGTCTGAT
* * * * *
11534790 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGATGAAACGAGCAGGCGGGCGGGCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGAGCGGG
* * * * *
11534855 TGGTCACTACGTCGGCCAGAGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * **
11534920 TTAGGCACATCCTCATATTTCTACATTCCAATGCCATTTTTATGTTTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
11534985 TCCCTTAAGCCTTCACGTGAA-TTTCCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTT
195 TCCCTTAAGCCTTCACGTGAAGTTT-CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
11535049 GAAACTTTTTTCCGTTCGAGATTTTTTATAATTTTTT-GGAAGGATTTTTGGCCCCAAACTTGGT
259 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *** * *
11535113 AGACGTAATCCCTACAATTTTT-TTGGAATGCACAAAAAAATTCTGCTAAAAACTCAAAGTGTAC
324 AGACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* *
11535177 AAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
11535242 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAGACGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
11535307 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGGCCCCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
** * * **
11535371 GATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGAC
583 GATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
** * * * **
11535436 GAAGAAAAATTTGGCACCAGCATATGCCCGAGCCCAGCATGTGCTGCCTCAACCCTCGATCCAAT
648 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-GGTCTGAT
* * * * ** *
11535501 CCAATCTTTGATTGGGAATCAACTCCGTATGCTTAGACAAGGAATGAACTACGTATGCCTAAGTC
712 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * * * *
11535566 AACCCACGAAATGAGTGTGCGGTCGCTCAGTCGGCTAGAGTGGCGGGATGTGTAAGCTGGGGATC
777 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * *
11535631 GGCTGAGTCCCCCTCTGCGTGCTGCCAATCCTACTACCG-AAACCTTGGTTCGATCTGAT
842 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATTCGGTCTGAT
* * *
11535690 CTTAGACTAGGAATGAACTCCGTATGCCTAACCCAACCGACGAAACGAGCGGGCGG-G-CCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGAGCGGGC
* * ** * *
11535753 GAGCACTACGTCGGCCAGAGAGACAAGATGTGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
11535818 TAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCATGTAAATTCATACATTGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
11535883 CCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
*
11535948 AACTTTTTACGGCTT-GAGATTTTTTAAAATTTTTTCGGAAGGAGATTTGGCCCCAAACTTGGTA
261 AACTTTTTACGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* ** * * *
11536012 GATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACCTCAGCTAAAAATTCGAAGTGAACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
* * * * *
11536077 GATTTTATGACCATTTGACAAAACTGTCCCCATTTCATACACTTGAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
11536142 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
11536207 CAATATAAGGGCCAAGTACCAGTACCCATCACACATCATGCGCGCACA-CCCCCCGGCCCCCCCA
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCG
* ** * * * ** * *
11536271 ATCGTCGGAACCCCAATGCTACCAGTAAGGTTATCCGATGATTCTCTGACGATGGTGCCCCGACG
584 ATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
* ** * *
11536336 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGTAACCCTTGGTCTGGTC
649 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TGGTCTGATC
* * * *
11536401 CAATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTCAGTCA
713 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
11536466 ACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGTTGCGCAAGCCGGGGATCA
778 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * ** ** * *
11536531 GTC-GG-CCCCCTTCTACGTGCTATCGATCCTGCTGTCGCAACCCT-TAATCTGGTCTGAT
843 GCCGGGTCCCCC-TCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATTC-GGTCTGAT
* * ** * * *
11536589 CTTAGACTGGGAAAGAACTCTGTATGCCTAAGGTAACCGACAAAATGAGCGGGCAGGCGAGAGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGAGCGGG
* ** * * * * *
11536654 CAGGCACTACATCAGCCAGAGAGACGGGATGCGTAAGCTGTAGATCCATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
11536719 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
11536784 TCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTTGTTTTCTATTTTTCATGATTTTCG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *** *
11536849 AAACCTTTCGTGGTTCGGGATTTTTTGAAAATTTTTTC-GAATGGAGTTTTGGCCCCAAACTTGG
260 AAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACTTGG
* * * *
11536913 CAGACATGATCCTTGTATTTTTTTTGGCATGGACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* * * *
11536978 AAGATTTTGTGACCATTTGAAAAAAGTATCCTCATTTCATACACTTTAATGGCTACTGGCAGAAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * * *
11537043 ACCTATAAAATCTCAAATGCTCGTTAAGGGAGTGCGAGTTCTTGAGGTGTGATGAGGGATAGGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
** * * * * *
11537108 GCCAATATAAGGGCCAAGTACGGGAACCCTTTGCACATCATGTGCGCACACCCCTCCAGCCACCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC-CCC
* * * * *
11537173 CAATCGTCGGAACCCCAATGCTGCCAGTCAGGTTCTCCAGCGATGCTCCGACGATGGTG--CC--
582 CGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* * * * *
11537234 C---G----A----GC-CCAG--CAT------G---TGCA---G-T--CGTAACCCTCGGACCGG
647 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-GGTCTGA
* * *
11537270 TCCGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGGGACTGAACTCCGTATGCCTAAGT
711 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** * * * *** *
11537335 CAACCCAAGAAAATAGCGTACGGGCGTTCAGCTGGCCAGAGGGGCGGGATGAATAAGCCGAGGAT
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * * * *
11537400 CAGCCAGGTCCCCCTCTACATCCTACCGATCCTGCTACCGAAACCCTCGGTCCGATCTGAT
841 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATTCGGTCTGAT
* * *
11537461 CTTAGACTGGGAATGAACTCCGTTTGCCTAAGCCAACCGATGAAACGA----G-TG-GA-CGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGAGCGGGC
* * * *
11537519 GAGCACTACACCGGCCAGAGAGACGGGATGCACAAGCCTTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
11537584 TAGGCACAACTTAATATTTCTGCATGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
11537649 CCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
11537714 AAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGTAGTTTTTGCCCCAAACTTGGTAG
261 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
11537779 ACGTGATCTTTGTATTTTTCTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTCTACAAG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
* *
11537844 ATTTTGTGACCATTTGAAAAAAGTGTCCCCAGTTCAGACACTTTAATGGCTACTGGTAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
11537909 TGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
11537974 AATATAAGGGCCAACTACCAGCACCCATCGCACATCTTGTGCGCACA-CCCCCCGGCCCACCCGA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGA
* ** * * * * * ***
11538038 TCATTGGAACCCCAACACCGTCGGTCAGGTTCTCTGGTGATGCTCCGGCGCTGGTGCCCCGGTAA
585 TCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGA
*
11538103 AGAAAAATACGGCACCAGCACAT
650 AGAAAAATGCGGCACCAGCACAT
11538126 CTCAATCTAA
Statistics
Matches: 6777, Mismatches: 867, Indels: 294
0.85 0.11 0.04
Matches are distributed among these distances:
861 1 0.00
862 56 0.01
863 249 0.04
864 204 0.03
865 2 0.00
866 1 0.00
868 1 0.00
869 1 0.00
870 1 0.00
871 128 0.02
872 76 0.01
873 8 0.00
874 2 0.00
875 49 0.01
876 714 0.11
877 130 0.02
878 647 0.10
879 6 0.00
880 7 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 80 0.01
885 199 0.03
886 489 0.07
887 2 0.00
888 5 0.00
889 3 0.00
891 3 0.00
892 6 0.00
893 1 0.00
894 2 0.00
895 4 0.00
896 4 0.00
897 220 0.03
898 316 0.05
899 284 0.04
900 73 0.01
901 156 0.02
902 211 0.03
903 1787 0.26
904 177 0.03
905 116 0.02
906 349 0.05
907 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGAGCGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGAT
CATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA
GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTGGTCTGATCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC
GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATTCGGTCTGAT
Found at i:11533771 original size:26 final size:26
Alignment explanation
Indices: 11533719--11533771 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11533709 CTAGTCCGAT
*
11533719 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
11533745 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
11533771 C
1 C
11533772 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:11534641 original size:26 final size:26
Alignment explanation
Indices: 11534605--11534657 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11534595 CCGGTCTGAT
**
11534605 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
11534631 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
11534657 C
1 C
11534658 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:11536442 original size:26 final size:26
Alignment explanation
Indices: 11536406--11536457 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11536396 TGGTCCAATT
*
11536406 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
11536432 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
11536458 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:11537318 original size:26 final size:26
Alignment explanation
Indices: 11537276--11537328 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11537266 CCGGTCCGAT
*
11537276 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
11537302 CTTAGACTGGGACTGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
11537328 C
1 C
11537329 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:11538975 original size:26 final size:26
Alignment explanation
Indices: 11538924--11538976 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11538914 GCAGTCCAAT
*
11538924 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11538950 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11538976 C
1 C
11538977 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.