Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 70 of 190
Found at i:11541527 original size:26 final size:26
Alignment explanation
Indices: 11541491--11541541 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
11541481 CTGATTCGAT
11541491 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11541517 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
11541542 AACTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11545058 original size:26 final size:25
Alignment explanation
Indices: 11545008--11545059 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
11544998 CCGGCCCAAT
*
11545008 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCATATG
*
11545033 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACT-GGAATGAACTCCATATG
11545059 C
1 C
11545060 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:11545887 original size:26 final size:26
Alignment explanation
Indices: 11545858--11545910 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11545848 TCGATCCGAT
*
11545858 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
11545884 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
11545910 C
1 C
11545911 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:11547271 original size:901 final size:899
Alignment explanation
Indices: 11545467--11557580 Score: 15458
Period size: 901 Copynumber: 13.5 Consensus size: 899
11545457 TTACGGTTCA
* * *
11545467 GAAGGAGTTTTGG-CCAAAACTTGGTAGACGTGATCCCTTGTATTTTTGCTGGCATGCATAAAAA
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
11545531 AGTTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTG-AAATAGTGTCCCCATTTCA
65 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
11545595 GACACTTTAATGGCTACT-G--GC--A---G--------CAAATGCTCTTTAAGGGGATTGTGAC
130 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTGAG
* * *
11545644 TTCTCGAGATTTGATGAGGGATAGGAGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCCACA
194 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG-CACA
* * * *
11545708 TCATGTGTGCACACCCCCCTGAG-CCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCT-
258 TCATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
11545771 ---C----CT---ACGATGGTGCCCC-AGCG-AGAAAAATGTGACACCAACACATGCTCGAGCCC
322 CGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
11545824 AGCATGTGCTGCCGTAACCATCGGT-CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
386 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
* * * *
11545888 GACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGTGCTCAGTCGGC
451 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGC
* * * * *
11545953 CAGGGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTTCCCTCTTTGTGTGCTGGCTGATCCTG
516 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGG-TCCCCCTCTGTGTGCT-GCCGATCCTG
* * * * * *
11546018 CTACCGCAACCCAT-GGTTTGGTC-CACTCTTAGACTGGGAATGAACTCCATATGCATAAGCCAA
579 CTGCCGCAACCC-TCAGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
11546081 CCGACGAAACGAGCAGGCTGGTGGACGGGCGGGCAGGCACTACACTGGCCAGAGAGATAGGATGT
642 CCGACGAAACGAGCAGGC--G-GG-CGAGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGC
* * * * *
11546146 GTAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACACCTTCATATTTCTACATGCCAAT
699 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
*
11546211 ACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCCTTCACGTGAAGTTTCATGGC
764 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-GCCTTCACGTGAAGTTTCATGGC
** * * * * *
11546276 AAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAATTTTTTGCCGGTTCAGGAATTTTTAAAA
828 AAGACGACTCGTTTTCTATTTTTCATGATTTTGAAAACTTTTT-ACGGTTCGGGATTTTTTAAAA
11546341 TTTTTTCG
892 TTTTTTCG
* * * * **
11546349 GAAGGA-ATTTGGCACCAAACTTGGTAGACGTGATCCTTGCATTTTTGGTGGCATTAACAAAAAA
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
11546413 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
66 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* * *
11546478 ACACTTTAATCGCTACTGGCAGGAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTT
131 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
11546543 ATCTAGGTTTGGTGAGAGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCA
196 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * * **
11546608 TGTGCGCACACCCCCCCGACCCTCCCGATCACCGGAACCCTAATGCCGTCGGTCAGGTTCTCCTA
261 TGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* *
11546673 CGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
325 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
11546738 TGTGCTTCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACT
390 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
* ** * * * *
11546803 GGGAAAGAACTTTGTATGCCTAAGTCAACCGACCAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA
455 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGA
* ** * * * * * *
11546868 GGGGCGAGATGCGCAAGTTGGGGATCGGCCGGGTCGCCCTCTATGCGCTGTCGATCCTGCTGTCA
520 GGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCG
* * * *
11546933 TAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAGCTGACGAA
585 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
11546998 ACAAGCAGGCGGGCGAGCGTGCACTACGCCGGCCAAAGAGACGGGTTGCGCAAGCCATGGATCGA
650 ACGAGCAGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
11547063 TAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
715 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * *
11547128 GTAAATTCATACAATGGTCCCTTGAGCCTTCACGTGAGGTTTGATGGCAAGACGACTCGTTTTCT
780 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
11547193 ATCTTTCACGATTTTGGAAAACTTTTTACAGCTCGGGATTTTTTAAAATTTTTTTG
845 ATTTTTCATGATTTT-GAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* *
11547249 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
** * * *
11547314 ATTCAGCTAAAAACTCGAAGTGTACAAGGCTTTGTGACAATTTCAAAAAAGTATCCCCATTTCAA
66 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* * * *
11547379 ACACTTTAATGGCTACTGGCAGCAAACCTGTGAAATCTCAAATTCTCCTTAAGGGCGTGTGAGTT
131 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** * **
11547444 CTTGAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACTGGCACCCA-CGCACATCA
196 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
11547508 TGTGTGCACA--CCCCCGACCCCCCCAGTCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGG
261 TGTGCGCACACCCCCCCGGCCCCCCGA-TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * * * * ** *
11547571 TGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGACACCGGCACTTGTTCGAGCCCAACA
325 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
11547636 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACT
390 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
* * *
11547701 GGGAATGAACTTCGTATGCCTAAGTCAACACACGAAATGAGCATGCGGGCGCTCAGCCGGCCAGA
455 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * ** * ** *
11547766 GGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTATTGCTG
520 GGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCG
** * * *
11547831 CAACCCTCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGACAACCGATGAA
585 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
11547896 AC--G-A-GCGGGCGGGCGGGCACTATGCCGGCCAGAG-GACGGGATGCGCAAGCCGTGGATCGA
650 ACGAGCAGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
11547956 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
715 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* *
11548021 GTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTACATGGCAAGACGACTCGTTTTCT
780 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * ** *
11548086 ATTTTTCACGATTTTCAAAACTTTTTGCATTTCGAGATTTTTTAAAATTTTTTCG
845 ATTTTTCATGATTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * * *
11548141 GAAGGGGTTTTGGCCCCAAGCTTGGTGGATGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAA
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
11548206 ATTCAGCTAAAAATTTGAACTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
66 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
*
11548271 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
131 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
11548336 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
196 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * **
11548401 TGTGCGTACA-CCCCGCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAT
261 TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* ** * * * *
11548465 GATACTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGTACCAGCACATGCCCGAGTCCAGTAT
326 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
11548530 GTGCTGTCGCAACCGTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
391 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
* * *
11548595 GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAG
456 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* ** * *
11548660 GGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCTGC
521 GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGC
* * * * *
11548725 AACCGTCAGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAA
586 AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * *
11548790 CAAGCAGGCGGGCGGGCGGGCAGGCGTGCACTACGCCGACGAAAGAGACAGGATGCGCAAGCCGT
651 C--G-A-GCAGGCGGGC--G-A-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
11548855 GGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT
708 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* *
11548920 CTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
773 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** *
11548985 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTGA-GGCTAC-AAATTTTTTAAAATTTTTTTG
838 GTTTTCTATTTTTCATGATTTTGAAAACTTTTT-ACGG-TTCGGGATTTTTTAAAATTTTTTCG
* * * *
11549047 AAAGGAGTTTGGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
** *
11549112 ATTCAGCTAAAAACTTAAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
66 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* *
11549177 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATT
131 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
11549242 CTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
196 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
11549307 TGTGCGCACACCCACCCCGGCCCCCTGGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCA
261 TGTGCGCACACCC-CCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
11549372 GCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACTAGCACATGCCTGAGCCCAGC
324 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* **
11549437 ATGCGCTGCCGCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
389 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* *
11549502 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAG
454 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * *** * * *
11549567 AGGGGTGGGATCCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCCGATCCTACTACT
519 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCC
* * ** * *
11549632 GTAACCCTTAGTCTGGTCCAATCTTACACTGGGAATGAACTCCATATGCCTAAG-----C--C-A
584 GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
11549689 AAC--G-A------CGA------A--A-------C-----GA-GGGATGCGCAAGCCGTGGATCG
649 AACGAGCAGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
** * *
11549724 ATAGGGTGGTAGGTGGGTTTAGTTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTGTGACT
714 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * * *
11549789 TGTAAACTCATACAATGGTGCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGATGACTCGTTTTC
779 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * ** * *
11549854 TATTTTTCACGATTTTGAAGACTTTTTACGGTTCAAGATCTTTTAAAAATTTTTCG
844 TATTTTTCATGATTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
11549910 GAAGGAGTTTTGGCCCCAAACCTGGTAGGCATGATCCTTATATTTTT-TTGGCATGTACAAAAAA
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
11549974 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGATAAAAGTGTCCCCATTTCAG
66 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* **
11550039 ACACCTTAACAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
131 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
11550104 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCACATCA
196 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
11550169 TGTGCGCAGACCCCCCCGACCCCCCCGATTGTCGGAACCCCAATGTCC-CCGTTCAGGTTCTTCG
261 TGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATG-CCGCCGGTCAGGTTCTCCG
* * *
11550233 GCGA---T------A--GTGCCTCGACGAAGAAAAAATGCAGCACCAGCACATGCCCGAGCCTAG
324 GCGATGCTCCGACGATGGTGCCCCGACGAAG-AAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
11550287 CATGTGCTACTGCAACCCTTGGTCCAGTCCGCTCTTAGACTGGGAATGAACTCCATATGCTTAGA
388 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * * *
11550352 CTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCAGCCA
453 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * * *
11550417 GAAGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCCGCTAC
518 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGC
* * * * * *
11550482 CGTAACCCTCGGTTTGGTCTG-TCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACTGACA
583 CGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
11550546 AAACGAGCGGAAGGGTGGGC-AGGCGGGCACTACGTCGGCCAGAGAGAAGGAATGCGCAAGCCGT
648 AAACGAGC---A-GGCGGGCGA-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
11550610 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTCCCAATGGCATTTTT
708 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
11550675 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
773 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
11550740 GTTTTCTATTTTTCAGGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAATATTTATTCG
838 GTTTTCTATTTTTCATGATTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
11550802 GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGAATGCACAAAAAA
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
11550867 ATTCAACTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCTTTTCAG
66 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
11550932 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
131 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
11550997 CTCAAGGTTTGATGAGGGATAGGGGCCCAATATAA-GGTCAACGTACCAGCACCCATCGCACATC
196 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA-GTACCAGCACCCATCGCACATC
* * **
11551061 ATGTGTGCACACCCCCCCGGCCCACCCGATCGTCGGAACCCAAATGCCATCGGTCAGGTTCTCCG
260 ATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
11551126 GCGATGCTCCGGCGATAGTGCCCC-AGCGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAG
324 GCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
11551190 CATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
388 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * * **
11551255 CAGGGAATAAACTCTGTATGCCTAAGTCAACAAACGAAATGAGCGTGCGGGCGCTCAGCCGGCC-
453 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCA
* * * **
11551319 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCCTATTGC
518 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGC
* * * * * *
11551384 TGCAACCCTCAGTTTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGATG
583 CGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
11551449 AAACGAGCGGGCGGGCGGGAGGGCGAGCATTGCGCCGACCAGAAAGACGGGATGCGCAAGCCGTG
648 AAACGAGCAGGCGGGC--GA--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * * *
11551514 GATCGATAGGGTGGTAGGTAGGTTTAAGCACATCTTCATATTTCTGTGTCCCAATGGCATTTTTA
709 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
11551579 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
774 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
11551644 TTTT-TGATTTTTCATGATTTTTG-AAACTTTTTACGTTTTGAGATTTTTTAAAATTTTTTTG
839 TTTTCT-ATTTTTCATGA-TTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
*
11551705 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
11551770 ATTCAG---------C------T--AA-A-------A--ATTTGAAAAAAGTGTCCCCATTTCAA
66 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* *
11551808 ACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTT
131 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* ** * * * *
11551873 TTGGACGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATTGCACATCA
196 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
11551938 TGTGCGTACACCCCCCCGGCCCCCCGATCGCCGGAATCCCAATGCCGTCGGTTAGGTTCTCCGAC
261 TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* ** * *
11552003 GATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGTACCAGCACATGCCCAAGCCCAGCAT
326 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
11552068 GTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTATACTG
391 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
* * *
11552133 GGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAG
456 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * *
11552198 GGGCGAGATGCGCAAGCCGTGGATCAGCCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
521 GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGC
* * *
11552263 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGATGAAA
586 AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
11552328 CGAGCAGCGAGCGGTCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCACAAGCTGTGGATC
651 CGAGCA--G-GCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * *
11552393 GATAGGGTGGTAGGTGGGTTAAGGCATATCTTCATATTTCTACGTGCCAATGCTATTTTTATGGC
713 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
* * *
11552458 TCGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTT
778 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * *
11552523 CTATTTTTCACGATTTTTG-AAACTTTTTACAGTTCAGGATTTTTTCAAATTTTTTTG
843 CTATTTTTCATGA-TTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * * *
11552580 AAAGGAGTTTTGTCCCCAAACCTGGTAAACGTGATCCTTGTATTTTTGCTGGCATGCACAAAAAC
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
11552645 ATTCAGCAAAAAACTCGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAA
66 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
*
11552710 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTT
131 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
11552775 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
196 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** *
11552840 TGTGCGCACACCCCCCCGGCCCCCCGATCG-CGGAACCCCAATTTCACCGGTCAGGTTCTCCGGC
261 TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * *
11552904 GATGCCTCC-AGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCAGAGGCCAGC
326 GATG-CTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
**
11552968 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
389 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* *
11553033 TGGGAATCAACTCCGTATGGCT-AGTCAACCCACGAAATGAGCGT-CTGGGCGCTCAGCCGGCCA
454 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-GGGCGCTCAGCCGGCCA
* * * * * * *
11553096 GAGGGACGGGATACGCAAGTCGGGGATCGGTCGAGTTCCCCTCTGTGTGCTGCCGATCCTGCTAC
518 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGC
* ** *
11553161 CGCCACCCTCAGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
583 CGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
** * * * *
11553226 AAACGAGTGGGCGGGCGGGCGGGCACTACGCCTGCCAGAGAGATGGGATGCGCAAGCCGTGGATT
648 AAACGAGCAGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
11553291 GATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGGCATTTTTATGGC
713 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
*
11553356 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTCGTTTT
778 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** * * *
11553421 CTATTTTTTTTTATTTTGAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTATTCG
843 CTATTTTTCATGATTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
*
11553478 GAAGGATTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
11553542 ATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
66 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* * *
11553607 ACATTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
131 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
11553672 CTCATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCA
196 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
11553737 TGTACGCACACCCATCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGCCGATCAGGCTCTCC-G
261 TGTGCGCACACCC-CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * *
11553801 -GATGCTTCGGCGATGGTGCCCCGACGATGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
325 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
11553865 TGTGCTGCCGCAACCCTCGGTCTGGTCCTG-TCTTAGACTGGGAATGAACTCCATATGCTTAGAC
390 TGTGCTGCCGCAACCCTCGGTCCGGTCC-GATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * *
11553929 TGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCAGCCAG
454 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAG
* * ** ** * *
11553994 AGGGGCGGGATGCGCAAGCCAGGGATAGGCTAGGTCCCCCTCTGCATGTTGCCAATCCTGCTGCC
519 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCC
* **
11554059 CCAACCCTTGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
584 GCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
** * *
11554123 AAACGAGTGGGCGGGCGGACGGGCGGGCACTACGCCTGCCAGAGAGATGGGATGCGCAAGCCGTG
648 AAACGAGCAGGCGGGC-GA---GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
11554188 GATTGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGGCATTTTTA
709 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* *
11554253 TTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTCG
774 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
11554318 TTTTTTATTTTTCTTGATTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTATTCG
839 TTTTCTATTTTTCATGATTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* *
11554379 GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT-CTTGTATTTTTGTTGGCATGCATAAAAAA
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
11554443 ATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
66 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* *
11554508 ACATTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
131 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
11554573 CTCATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCA
196 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
11554638 TGTACGCACACCCATCCCGGCCCCCCAATCGTCGAAACCCCAATGCCGCCGATCAGGCTCTCCGG
261 TGTGCGCACACCC-CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * * *
11554703 CGATGCTTCGGCGATGGTGCCCCGACGATGAAAAATGTGGCACGAGCACATGCCCGAGCCCAGCA
325 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
11554768 TGTGCTGTCGCAACCCTCGGTCTGGTCCTG-TCTTAGACTGGGAATGAACTCCATATGCTTAGAC
390 TGTGCTGCCGCAACCCTCGGTCCGGTCC-GATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * * **
11554832 TGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAATGAGCGTACGAGCGCTCAGCCAACCAG
454 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAG
* * ** ** * *
11554897 AGGGGCGGGATGCGCAAGCCAGGGATAGGCTAGGTCCCCCTCTGCATGCTGCCAATCCTGTTGCC
519 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCC
* ** * *
11554962 CCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAGCCGACGA
584 GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * *
11555027 AACGAGTGGGCGGGTGGGCGGGCGGACACTACGCCTGCCAGAGAGATGGGATGCGCAAGCCGTGG
649 AACGA----GCAGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * *
11555092 ATTGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGGCATTTTTAT
710 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
*
11555157 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTCGT
775 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
11555222 TTTCTATTTTTCTTGATTTTGAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTATTCG
840 TTTCTATTTTTCATGATTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
*
11555282 GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
11555347 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAATGTCCCCATTTCAG
66 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* * *
11555412 ACATTTTAATGGCTATTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
131 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
11555477 CTCATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCTCATCA
196 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
11555542 TGTACGCACACCCATCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGCCAGTCAGGCTCTCCGG
261 TGTGCGCACACCC-CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * * *
11555607 CGATGCTTCGGCGATGGTGCCCCGACGATGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCA
325 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
11555672 TGTGCTGCCGCAACCCTCGGTCTGGTCCGGTCTTAGACTGGGAATGAACTCCATATGCTTAGACT
390 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
* * * *
11555737 GGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAATGAGCGTACGGCCGCTCAGCCAGCCAGA
455 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * ** * *
11555802 GGGGCAGGATGCGCAAGCCAGGGATAGGCTGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCC
520 GGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCG
** *
11555867 CAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
585 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
11555932 AC--G-A-GC--G-G-GCGGGCACTACGCCGACCAGAGATACGGGATGCGCAAGCCGTGGATCGA
650 ACGAGCAGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
11555989 TAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATTCCTTTTTTATGGCTT
715 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * * *
11556054 GCAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGTCGACTCCTTTTCT
780 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
11556119 ATTTTTCATGATTTTTG-AAACTTTTTACGATTTGGGATTTTTTAAAATTTTTTCG
845 ATTTTTCATGA-TTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
11556174 AAAGGAATTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTTTTGGTAGGCACAAAAAA
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
11556238 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
66 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* *
11556303 AGACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
131 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
11556368 CTCGAGGTTTGATGA-GGATTACGGGGCCAATATACGGGCCAAGTACCATCACCCATTGCACATC
196 CTCAAGGTTTGATGAGGGA-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
11556432 ATGTGCGCACA-CCCCCTGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCAGTCAGGTTCTCCG
260 ATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * ** **
11556496 ATGATGCTCCAATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCAAAGCCCAGC
324 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
11556561 ATGTGCTGCCGCAACCTTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
389 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* *
11556626 TAGGAATGAACTCCGTATGCTTAGACTAGGAGTGAACTCTGTATGCCTAAGTCAACCCATGAAAC
454 T-GG---G-A------ATG---A-AC------T---C-C-GTATGCCTAAGTCAACCCACGAAAT
* * * *
11556691 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGG-TCGACCGTGTCTC
493 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGGATCGGCCGGGTCCC
* * * * *
11556755 CCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGA
557 CCTCTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
* * * *
11556820 ACTCCATATGCCTAAGCCAACCGACGAAATGA--A--C--G-G-GCGGGCACTACGTCGGCTAGA
622 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGAGCGGGCACTACGCCGGCCAGA
* * *
11556877 GAGACGAGATGAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTT
687 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
11556942 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGA
752 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * *
11557007 AGTTTCATGGCAACACGACTCGTTTTTTATTTTTCTTGATTTTTG-AAACATTTTACGGTTCGAG
817 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAAAACTTTTTACGGTTCGGG
* *
11557071 ATTTTTTAAAAGTTTTTCA
881 ATTTTTTAAAATTTTTTCG
* * * * *
11557090 GAAGGAGTTTTGGCCCCAATCATGGAAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAC
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
11557155 ATTCTGCTAAAAACT-GCAAGTGCACAATATTTTGTGGCCATTTGAAAAAAGTTTCCCCATTTCA
66 ATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
11557219 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGG-GTGAG
130 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAG
*
11557283 TTCTCAAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
194 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * ***
11557348 CACGTGCACACACCCCTCACCCCTGGCCCCCCCGATCGCCGAAACCCCAATGCTATCGGTCAGGT
259 CATGTGCGCACA--CC-C-CCCC-GG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* ** * ** ** *
11557413 TCTCCGGTGATGCTCCGGTGATGGTGCCTCGGTGAAGAAAAATGCGGCATTAGCACATGCCCGGG
318 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * ** * * *
11557478 CCTAGCATGTGCTACCGCAACCCTCGGTCCAATTCGATCTTAGACTGGGAATGAACTTCGTATGC
383 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
* *
11557543 TTATACTGAGAATGAACTCCGTATGCCTAAGTCAACCC
448 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
11557581 TCTGGCTGGA
Statistics
Matches: 9980, Mismatches: 1020, Indels: 449
0.87 0.09 0.04
Matches are distributed among these distances:
850 42 0.00
851 217 0.02
852 1 0.00
857 1 0.00
858 5 0.00
860 1 0.00
861 38 0.00
862 220 0.02
863 227 0.02
864 3 0.00
870 1 0.00
871 1 0.00
875 478 0.05
876 281 0.03
877 7 0.00
878 3 0.00
879 6 0.00
881 72 0.01
882 59 0.01
883 1 0.00
884 1 0.00
885 3 0.00
886 4 0.00
887 1 0.00
888 2 0.00
889 4 0.00
890 160 0.02
891 225 0.02
892 725 0.07
893 750 0.08
894 41 0.00
895 3 0.00
896 134 0.01
897 497 0.05
898 639 0.06
899 34 0.00
900 99 0.01
901 1068 0.11
902 405 0.04
903 1046 0.10
904 611 0.06
905 23 0.00
906 448 0.04
907 13 0.00
908 13 0.00
909 397 0.04
910 65 0.01
911 125 0.01
912 3 0.00
914 1 0.00
915 1 0.00
916 388 0.04
917 215 0.02
918 11 0.00
919 1 0.00
920 1 0.00
921 1 0.00
922 4 0.00
923 154 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAG
GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGC
AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCAGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCATGATTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
Found at i:11547696 original size:26 final size:26
Alignment explanation
Indices: 11547667--11547719 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11547657 CTGGTCCGAT
11547667 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
11547693 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
11547719 C
1 C
11547720 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:11548596 original size:26 final size:26
Alignment explanation
Indices: 11548560--11548612 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11548550 CCGGTCCGAT
11548560 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11548586 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11548612 C
1 C
11548613 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11549505 original size:26 final size:26
Alignment explanation
Indices: 11549469--11549521 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11549459 CCGGTTTGAT
11549469 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11549495 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11549521 C
1 C
11549522 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11550349 original size:26 final size:26
Alignment explanation
Indices: 11550320--11550372 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11550310 CCAGTCCGCT
*
11550320 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
11550346 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
11550372 C
1 C
11550373 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:11551252 original size:26 final size:26
Alignment explanation
Indices: 11551223--11551275 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11551213 CCGGTCCGAT
* *
11551223 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
*
11551249 CTTAGACAGGGAATAAACTCTGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
11551275 C
1 C
11551276 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTCCGTATG
Found at i:11551606 original size:903 final size:902
Alignment explanation
Indices: 11549702--11557580 Score: 10505
Period size: 903 Copynumber: 8.8 Consensus size: 902
11549692 GACGAAACGA
**
11549702 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTTACATCTTCATATTTCTGCG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
* * * * * *
11549767 TGCCAATGCCATTTTTGTGACTTGTAAACTCATACAATGGTGCCTTAAGCCTTCACCTGAAGTTT
66 TGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * **
11549832 CATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTGAAGACTTTTTACGGTTCAAGATCTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGAT-TTT
* * * * *
11549897 TAAAAATTT-TTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGGCATGATCCTTATATTTTT-TTG
195 TTAAAATTTATTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
11549960 GCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGATAAAAG
260 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* **
11550025 TGTCCCCATTTCAGACACCTTAACAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
325 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
11550090 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCA
390 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
11550155 CCCATCGCACATCATGTGCGCAGACCCCCCCGACCCCCCCGATTGTCGGAACCCCAATGTCC-CC
455 CCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATG-CCGCC
* * * *
11550219 GTTCAGG-T-T----C--T--T-CGGCGATAGTGCCTCGACGAAGAAAAAATGCAGCACCAGCAC
518 GGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAG-AAAAATGCGGCACCAGCAC
* * * * * *
11550273 ATGCCCGAGCCTAGCATGTGCTACTGCAACCCTTGGTCCAGTCCGCTCTTAGACTGGGAATGAAC
582 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* *
11550338 TCCATATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
647 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
* * *
11550403 CGCTGAGCCAGCCAGAAGGGCGGGATGCACAAGCCGGGGATCGG-TCGGGTCCCCCTCTGCGTGC
712 CGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGC
* * * * * ** *
11550467 TACCGATCCCGCTACCGTAACCCTCGGTTTGGTCTG-TCTTAGACTGGAAATGAACTCCGTATGC
776 TGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * ** * * * *
11550531 CTAAGCCAACTGACAAAACGAGCGGAAGGGTGGGCA-GGCGGGCACTACGTCGGCCAGAGAGAA
841 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-AGGGCGAGCACTACG-CCGCCAGAGAGAC
* *
11550594 GGAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
*
11550659 TCCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
66 TGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
11550724 CATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTTAAAACTTTTTACGGTTCAGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTT
* * *
11550789 TAATATTTATTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
196 TAAAATTTATTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
11550854 AATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGT
261 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
11550919 GTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
326 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
11550984 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAA-GGTCAACGTACCAGCA
391 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA-GTACCAGCA
* * **
11551048 CCCATCGCACATCATGTGTGCACACCCCCCCGGCCCACCCGATCGTCGGAACCCAAATGCCATCG
455 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCG
* * *
11551113 GTCAGGTTCTCCGGCGATGCTCCGGCGATAGTGCCCC-AGCGAAGAAAAATACGACACCAGCACA
519 GTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACA
* *
11551177 TGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
583 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * **
11551242 CCGTATGCTTAGACAGGGAATAAACTCTGTATGCCTAAGTCAACAAACGAAATGAGCGTGCGGGC
648 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
* *
11551307 GCTCAGCCGGCC-GAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTA
713 GCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTG
** * ** * *
11551371 CCGATCCTATTGCTGCAACCCTCAGTTTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCT
778 CCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
11551436 AAGCTAACCGATGAAACGAGCGGGCGGGCGGGAGGGCGAGCATTGCGCCGACCAGAAAGAC
843 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGAGGGCGAGCACTACGCCG-CCAGAGAGAC
* * *
11551497 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAAGCACATCTTCATATTTCTGTG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
*
11551562 TCCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
66 TGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * *
11551627 CATGGCAAGACGACTCGTTTT-TGATTTTTCATGATTTTTGAAACTTTTTACGTTTTGAGATTTT
131 CATGGCAAGACGACTCGTTTTCT-ATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTT
* * *
11551691 TTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
195 TTAAAATTTATTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
11551756 GCATGCACAAAAAAATTCAG---------C------T--AA-A-------A--ATTTGAAAAAAG
260 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
11551794 TGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTA
325 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * ** * * *
11551859 AGGGGGTGTGATTTTTGGACGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCA
390 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
11551924 CCCATTGCACATCATGTGCGTACACCCCCCCGGCCCCCCGATCGCCGGAATCCCAATGCCGTCGG
455 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* * ** *
11551989 TTAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGTACCAGCACATG
520 TCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * *
11552054 CCCAAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCC
585 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
11552119 ATATGCTTATACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTGCGGGCGC
650 ATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGC
* * * * **
11552184 TCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGTGGATCAGCCAGGTCCCCCTCTGCGTGCTGCC
715 TCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCC
* * * *
11552249 GATCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATACCTAA
780 GATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ** *
11552314 GCCAACCGATGAAACGAGC-AGCGAGCGGTCGGGCGGGCACTACGCCGGCCAGAGAGAC
845 GCCAACCGACGAAACGAGCGGGCGGGCGGGAGGGCGAGCACTACGCC-GCCAGAGAGAC
* * * * * *
11552372 AGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTAAGGCATATCTTCATATTTCTACG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
* * *
11552437 TGCCAAT-GCTATTTTTATGGCTCGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTT
66 TGCCAATGGC-ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
11552501 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTTT
130 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTT
* * * * * * * *
11552566 TTCAAATTTTTTTGAAAGGAGTTTTGTCCCCAAACCTGGTAAACGTGATCCTTGTATTTTTGCTG
195 TTAAAATTTATTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * *
11552631 GCATGCACAAAAACATTCAGCAAAAAACTCGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAG
260 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
11552696 TGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGA
325 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
11552761 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
390 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
** *
11552826 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG-CGGAACCCCAATTTCACCGG
455 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* *
11552890 TCAGGTTCTCCGGCGATGCCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT
520 TCAGGTTCTCCGGCGATG-CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* *
11552955 GCCAGAGGCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
584 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
** * *
11553020 TGTATGCTTAGACTGGGAATCAACTCCGTATGGCT-AGTCAACCCACGAAATGAGCGT-CTGGGC
649 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-GGGC
* * * * * * *
11553083 GCTCAGCCGGCCAGAGGGACGGGATACGCAAGTCGGGGATCGG-TCGAGTTCCCCTCTGTGTGCT
713 GCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCT
* * * *
11553147 GCCGATCCTGCTACCGCCACCCTCAGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCC
777 GCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
11553212 TAAGCCAACCGACGAAACGAGTGGGCGGGC----GGGCGGGCACTACGCCTGCCAGAGAGAT
842 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGAGGGCGAGCACTACGCC-GCCAGAGAGAC
* *
11553270 GGGATGCGCAAGCCGTGGATTGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
*
11553335 TGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGT
66 TGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
** * * *
11553400 CATGGCAAGACGACTCGTTTTCTATTTTTTTTTATTTTGAAAACTTTTTGCGGTTCGGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTT
*
11553465 TAAAATTTATTCGGAAGGATTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
196 TAAAATTTATTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
11553529 CATGCACAAAAAAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
261 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
11553594 GTCCCCATTTCAAACATTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
326 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
11553659 AGGGGTGTGAGTTCTCATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
391 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
11553724 CTATCGCACATCATGTACGCACACCCATCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGCCGA
456 CCATCGCACATCATGTGCGCACACCC-CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* * * *
11553789 TCAGGCTCTCC-G-GATGCTTCGGCGATGGTGCCCCGACGATGAAAAATGTGGCACCAGCACATG
520 TCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
*
11553852 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCTG-TCTTAGACTGGGAATGAACTC
585 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC-GATCTTAGACTGGGAATGAACTC
* *
11553916 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAATGAGCGTACGGGCG
649 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG
* * * * *
11553981 CTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCAGGGATAGGCTAGGTCCCCCTCTGCATGTTGC
714 CTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGC
* * ** *
11554046 CAATCCTGCTGCCCCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
779 CGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
11554111 AGCCAACCGACGAAACGAGTGGGCGGGC-GGACGGGCGGGCACTACGCCTGCCAGAGAGAT
844 AGCCAACCGACGAAACGAGCGGGCGGGCGGGA-GGGCGAGCACTACGCC-GCCAGAGAGAC
* *
11554171 GGGATGCGCAAGCCGTGGATTGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
* *
11554236 TGCCAATGGCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGT
66 TGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
11554301 CATGGCAAGACGACTCGTTTTTTATTTTTCTTGATTTTGAAAACTTTTTACGGTTCGGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTT
*
11554366 TAAAATTTATTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT-CTTGTATTTTTGTTGG
196 TAAAATTTATTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
11554430 CATGCATAAAAAAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
261 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
11554495 GTCCCCATTTCAAACATTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
326 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
11554560 GGGGGTGTGAGTTCTCATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
391 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * *
11554625 CTATCGCACATCATGTACGCACACCCATCCCGGCCCCCCAATCGTCGAAACCCCAATGCCGCCGA
456 CCATCGCACATCATGTGCGCACACCC-CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* * * * *
11554690 TCAGGCTCTCCGGCGATGCTTCGGCGATGGTGCCCCGACGATGAAAAATGTGGCACGAGCACATG
520 TCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* *
11554755 CCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCTG-TCTTAGACTGGGAATGAACTC
585 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC-GATCTTAGACTGGGAATGAACTC
* * *
11554819 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAATGAGCGTACGAGCG
649 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG
* * * * *
11554884 CTCAGCCAACCAGAGGGGCGGGATGCGCAAGCCAGGGATAGGCTAGGTCCCCCTCTGCATGCTGC
714 CTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGC
* * * **
11554949 CAATCCTGTTGCCCCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
779 CGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
11555014 AGCCAGCCGACGAAACGAGTGGGCGGGTGGGCGGGCG-GACACTACGCCTGCCAGAGAGAT
844 AGCCAACCGACGAAACGAGCGGGCGGGCGGGAGGGCGAG-CACTACGCC-GCCAGAGAGAC
* * * *
11555074 GGGATGCGCAAGCCGTGGATTGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
*
11555139 TGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGT
66 TGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
11555204 CATGGCAAGACGACTCGTTTTCTATTTTTCTTGATTTTGAAAACTTTTTGCGGTTCGGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTT
*
11555269 TAAAATTTATTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
196 TAAAATTTATTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
11555334 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAAT
261 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
11555399 GTCCCCATTTCAGACATTTTAATGGCTATTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
326 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
11555464 GGGGGTGTGAGTTCTCATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
391 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * *
11555529 CTATCGCTCATCATGTACGCACACCCATCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGCCAG
456 CCATCGCACATCATGTGCGCACACCC-CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* * * *
11555594 TCAGGCTCTCCGGCGATGCTTCGGCGATGGTGCCCCGACGATGAAAAATGTGGCACCAGCACATG
520 TCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * *
11555659 CCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGGTCTTAGACTGGGAATGAACTCC
585 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * *
11555724 ATATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAATGAGCGTACGGCCGC
650 ATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGC
* * * *
11555789 TCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCAGGGATAGGCTGGGTCCCCCTCTGCATGCTGCC
715 TCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCC
* * **
11555854 AATCCTGCTGCCCCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
780 GATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
*
11555919 GCCAACCGACGAAACGA----GCGGGC------G-G-GCACTACGCCGACCAGAGATAC
845 GCCAACCGACGAAACGAGCGGGCGGGCGGGAGGGCGAGCACTACGCCG-CCAGAGAGAC
* * *
11555966 GGGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
** * * *
11556031 TGCCAATTCCTTTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTT
66 TGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * *
11556096 CATGGCAAGTCGACTCCTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTTGGGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTT
* * * *
11556161 TAAAATTTTTTCGAAAGGAATTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTTTTGG
196 TAAAATTTATTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
11556225 TAGGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
261 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
11556290 GTCCCCATTTTAGAGACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
326 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
11556355 GGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATTACGGGGCCAATATACGGGCCAAGTACCATCA
391 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA-TAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * *
11556419 CCCATTGCACATCATGTGCGCACA-CCCCCTGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCA
455 CCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCG
** *** **
11556483 GTCAGGTTCTCCGATGATGCTCCAATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACAT
519 GTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
** * * *
11556548 GCCAAAGCCCAGCATGTGCTGCCGCAACCTTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTT
584 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
*
11556613 CGTATGCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAGTGAACTCTGTATGCCTAAGT
649 CATATGCTTAGACT-GG---G-A------ATG---A-AC------T---C-C-GTATGCCTAAGT
* * * *
11556678 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGG-
688 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCG-GGGA
* * * * * * *
11556742 TCGACCGTGTCTCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCAGTCCGATCCGATCTT
752 TCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTT
* * * *
11556807 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAACGGGCGGGC---A---CTA
817 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGAGGGCGA
* *
11556866 -C-GT-CG--GCTAGAGAGAC
882 GCACTACGCCGCCAGAGAGAC
* * * *
11556882 GAGATGAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGCA
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
* *
11556947 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTT
66 TGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * * *
11557012 CATGGCAACACGACTCGTTTTTTATTTTTCTTGATTTTTGAAACATTTTACGGTTCGAGATTTTT
131 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTT
* * * * *
11557077 TAAAAGTTT-TTCAGAAGGAGTTTTGGCCCCAATCATGGAAGACGTGATCCTTGTATTTTTCTTG
196 TAAAA-TTTATTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * * *
11557141 GCATGCACAAAAACATTCTGCTAAAAACT-GCAAGTGCACAATATTTTGTGGCCATTTGAAAAAA
260 GCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
11557205 GTTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
324 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
11557270 AAAGGGGG-GTGAGTTCTCAAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
389 -AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
11557334 CACCCATCGCACATCACGTGCACACACCCCTCACCCCTGGCCCCCCCGATCGCCGAAACCCCAAT
453 CACCCATCGCACATCATGTGCGCACA--CC-C-CCCC-GG-CCCCCCGATCGTCGGAACCCCAAT
*** * * * ** **
11557399 GCTATCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCTCGGTGAAGAAAAATGCGGCATT
512 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * ** *
11557464 AGCACATGCCCGGGCCTAGCATGTGCTACCGCAACCCTCGGTCCAATTCGATCTTAGACTGGGAA
577 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * *
11557529 TGAACTTCGTATGCTTATACTGAGAATGAACTCCGTATGCCTAAGTCAACCC
642 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
11557581 TCTGGCTGGA
Statistics
Matches: 6308, Mismatches: 554, Indels: 245
0.89 0.08 0.03
Matches are distributed among these distances:
874 2 0.00
875 485 0.08
876 281 0.04
877 5 0.00
878 1 0.00
884 1 0.00
885 1 0.00
886 2 0.00
888 1 0.00
889 4 0.00
890 159 0.03
891 234 0.04
892 460 0.07
893 240 0.04
894 4 0.00
895 2 0.00
896 132 0.02
897 428 0.07
898 237 0.04
899 29 0.00
900 7 0.00
901 715 0.11
902 411 0.07
903 1068 0.17
904 618 0.10
905 2 0.00
908 2 0.00
909 1 0.00
911 1 0.00
912 3 0.00
914 1 0.00
915 1 0.00
916 370 0.06
917 218 0.03
918 11 0.00
919 3 0.00
920 8 0.00
921 2 0.00
922 4 0.00
923 154 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
TGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTT
TAAAATTTATTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT
CAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCA
TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCT
CAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCG
ATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGGCGGGCGGGAGGGCGAGCACTACGCCGCCAGAGAGAC
Found at i:11552136 original size:26 final size:26
Alignment explanation
Indices: 11552098--11552150 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11552088 CCGATCCGAT
11552098 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
11552124 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
11552150 C
1 C
11552151 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:11553036 original size:26 final size:26
Alignment explanation
Indices: 11553000--11553051 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11552990 CCGGTCCGAT
* *
11553000 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
11553026 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
11553052 GCTAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:11553932 original size:26 final size:26
Alignment explanation
Indices: 11553896--11553948 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11553886 CTGGTCCTGT
11553896 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11553922 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11553948 C
1 C
11553949 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11554835 original size:26 final size:26
Alignment explanation
Indices: 11554799--11554851 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11554789 CTGGTCCTGT
11554799 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11554825 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11554851 C
1 C
11554852 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11555739 original size:26 final size:26
Alignment explanation
Indices: 11555703--11555755 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11555693 CTGGTCCGGT
11555703 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11555729 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11555755 C
1 C
11555756 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11556622 original size:26 final size:26
Alignment explanation
Indices: 11556593--11556671 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
11556583 TCGGTCCGAT
*
11556593 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
11556619 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
11556645 CTTAGACTAGGAGTGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
11556671 C
1 C
11556672 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 1 0.02
26 47 0.98
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:11557545 original size:26 final size:26
Alignment explanation
Indices: 11557516--11557568 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11557506 CCAATTCGAT
* *
11557516 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
11557542 CTTATACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
11557568 C
1 C
11557569 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:11557665 original size:26 final size:26
Alignment explanation
Indices: 11557627--11557679 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11557617 GTTGACTTAG
*
11557627 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
11557653 GCATACAGG-GTTCATTCATAGTCTAA
1 GCATAC-GGAGTTCATTCACAGTCTAA
11557679 G
1 G
11557680 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:11558558 original size:26 final size:26
Alignment explanation
Indices: 11558529--11558581 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11558519 GTTGACTTAG
11558529 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
11558555 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11558581 G
1 G
11558582 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11560340 original size:26 final size:26
Alignment explanation
Indices: 11560304--11560356 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11560294 GTTGAGTTAG
*
11560304 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11560330 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11560356 G
1 G
11560357 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11561234 original size:26 final size:26
Alignment explanation
Indices: 11561196--11561248 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11561186 GTTGACTTAG
11561196 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11561222 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11561248 G
1 G
11561249 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11561679 original size:901 final size:902
Alignment explanation
Indices: 11559425--11573264 Score: 14760
Period size: 878 Copynumber: 15.5 Consensus size: 902
11559415 GTTGACTTTG
* * * * *
11559425 GCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11559490 CTCGGGCATCTGCAGGTGCAGCATTTTTCTTCGTCGGGGCACAATCG-CTGGAGCATCGCTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAG
* * *
11559554 AACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGCGTCGAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-G-C-CGGGGGGTGTGCGCACATGATG
* *
11559619 TCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
11559684 ACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
11559749 ACGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTTAGATGAATGTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
11559814 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAA
* * **
11559878 AAAATTTTAAAAAATCCCTAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
11559943 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**
11560008 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * *
11560073 GCGCATCCCGTCTCTCTGGTCAGTGTAGTGACC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
646 GCGCATCCCGTCTCTCTGACCGGCGTAGTG-CCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
11560137 TGGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGCGTTGCGGCAACA
710 TGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCA
* * * * * * *
11560201 GGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGGATCCCACCCCTCTGGCCA
774 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
11560266 GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTGTAA
839 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
11560330 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
11560395 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-TCTGGGGCACCATCGT-----C-T-----GAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAG
*
11560448 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGAGGGGTGTGCACACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCG-G-GGGGTGTGCGCACATGATG
11560513 TGCGATGGGT-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCAC-CATCAAACCTCGAGAACT
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC-CTCATCAAACCTCGAGAACT
* * *
11560576 CACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
11560641 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
11560706 TTGTGCAAGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * *
11560771 AAAATTTTAAAAAATCTCGAACCTTAAAAATGTTTCAAAAAACGTGAAAAATAGAAAACGAGTCG
451 AAAATTTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
11560836 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
11560901 GGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
11560966 TGCGCATCTCGTTTCTCTCACCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * *
11561031 TGGCTTAGGCTTACATAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGGATGCAGTAGTAG
710 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAG
* * * * * * * *
11561096 GATCGACAG-ACGTA-TGGGGGACCCGACCGATCCTCGGCTTGGGCATCCCGCCTCTTTGGTCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
11561159 TTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
11561222 GCATACGGTGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
11561287 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
11561352 ACCTGACCGACGGGATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTACGCTCATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
11561417 ATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
11561482 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTCAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
11561547 GGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
11561612 CAAGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * *
11561677 TTTAAAAAATCTCAAACCGTAAAAATGTTTCAGAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
11561742 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
11561807 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * *
11561872 ATCCCGTCTCTCTGGTCGGCGTA--G--T----GCCCGCCCGCCCGCTCGTTCCATCGGTTGGCT
650 ATCCCGTCTCTCTGACCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** ** * * * *
11561929 TAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGATTC-AGGGTTACGGGAGCAAGATC
715 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCGAGGGTTGCGGTAGCAGGATC
* * * * * * * *
11561993 GGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGTTTGCACATCCCGCCCCTCTGGTCGACTGA
779 GGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
11562058 GCGCCTGCACGCTCATTT--T--G-TG-GTT-----T---GA---C-TT---AG-----
844 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11562091 GCATACGGAGTTCATTCCTAGTCTAAGAT---A-CGGATCGAGGGTTGCGGTAGCACTTGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11562152 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCATCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
11562217 ACCTGA-CGAGCAGCATTAGGGTTCCGGCGGTCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
11562281 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
11562346 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
11562411 GCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTAAATCTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
11562476 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCACA-TTTGGGGCCAAAACTCCTTTCGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * * *
11562540 AATTTTAAAAAATCTCGAGCCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCATCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
11562605 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
11562670 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
11562735 ACATCCCGTCTCTCTAACCGGCGTAGTG-CTCGCCCGCCCGCCCGCCCGCCCGATCATTTCGTTG
648 GCATCCCGTCTCTCTGACCGGCGTAGTGCCT-GCCCGCCCGCCCGCCCG--C--TCGTTTCGTCG
* * * * * *
11562799 GTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATC-GTACCGAGGGTTGTGGCAG
708 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGTAG
** * * * * * * * * *
11562863 CAACATCGGTAGGACACAGAAGGGGACCTGGTCGATACC-CGACTTGCGCATCTCGACCCTCTGG
772 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT-CCTCGGCTTGCGCATCCCGCCCCTCTGG
* *
11562927 CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTTCATTCCCAGTC
836 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG-TTCATTCCCAGTC
11562992 TAA
900 TAA
**
11562995 G-AT-C--AG---------A--C------C--A---GACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** * *
11563034 CTCAGGCATGTGCTGGTGCCTCATTTTTTTTCATCGAGGCACCATCACCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
11563099 ACCTGACTGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGAGGTGTGCGCGCATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGG-GGTGTGCGCACATGATGT
*
11563164 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
11563229 CACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTCTCTGCCAGTAGCAATTAAAGTGTCCTCA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-GCTGCCAGTAGCCATTAAAGTGT-CTGA
*
11563294 AATGGGGACAC-TTTTTC-AATGGTCACAAAATCTTTGTACACTTCGA-TCTTTCAGCTGAATTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTACACTTCGAGT-TTTTAGCTGAATTT
* * * * * * * *
11563356 TTTTATGCATTCCAA-AAAAATTACAAGG-TCACCTTTAGCCCAAGGTTGCCGACC-AAATTCCT
384 TTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTA--CCAAGTTTG-GGGCCAAAACTCCT
* * * * * ** *
11563418 TCCGAAAAAATTTTAAAAAAGACCC-AACCGCAAAGAGTTTTTGAAACCTTATGAAAAAATAGAA
445 TTCGAAAAAATTTTAAAAAA-TCCCGAACCGTAAAAAG--TTTCAAAAATCATG-AAAAATAGAA
* *
11563482 AACGAGTCATCTTCGGCCATGAAACTT--CGTGAA-GCTTAAGGGACGATTGTATGAATTTACAA
506 AACGAGTCGTCTT--GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
11563544 GCCATAAAAATGGCATTGGTACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAGC
569 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * * **
11563609 GATCCACGGCTTGCGCATCCCGTGTCTCT-AGCCGGCAT-GTGCCTTCCTGTCTGCCTACCCGCT
634 GATCCACGGCTTGCGCATCCCGTCTCTCTGA-CCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCT
* * * * *
11563672 CATTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATCAGACC-GAACTGAGG
698 CGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGG
*** * * * *
11563736 GTTGCACCAGCAAGATCGACAGCACACAGAGGGGGACCCGACCGATCC-CTGGCTTGCGCATCCC
762 GTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTC-GGCTTGCGCATCCC
* * * * * *
11563800 GCCCCTCT-ACCGGTTTAGCGCCTGCAGGCTTCGTTTCGTGGG-TGACTTAGGCATACGGAGTCT
826 GCCCCTCTGGCCGGCTGAGCACCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGT-T
11563863 CATTCCCCAGCTCTAA
889 CATT-CCCAG-TCTAA
* * *
11563879 GCCATACGGAGTTCATTCCCAAGTCTAAGATCGGAATC-GAACGAGGGTTGCGTACA-CACATGC
1 G-CATACGGAGTTCATTCCC-AGTCTAAGATCGG-ACCGGACCGAGGGTTGCG-GCAGCACATGC
* * * *
11563942 TGGGACTCGGGCATGTGCTGGTGCTGCATTTTTCGTCATCGGGGCACCATCG-CATGAGCATCGC
62 TGGG-CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGC
* * * ** *
11564006 TGGAGAACCTGACCGGCGGCATTAGGGTTCCGGTGATAGAGGGGGCC-GGGGGTGTGCGCACATG
125 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATG
* * *
11564070 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAA
189 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
11564135 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-CTCGGTAGCCATTAAAGTGTT
254 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-CAGTAGCCATTAAAGTGTC
* *
11564199 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTCAGCTGAATT
318 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * *
11564264 TTTTTGTGCATGCCAACAAAAATTCAGGGATCACGTCTACCAAGTTTGTGTCTAAAAATCC-TTC
383 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
** ** *
11564328 TGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
448 -GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
11564393 TCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
512 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
11564458 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
577 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
11564523 ACTTGTGCATCCCGTCTCTCTGGCCGACGTA----------G--CGCCCGCCCGCTCGTTTCGTC
642 GCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * *
11564576 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGCAG
707 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAG
* * * ** * * * *
11564641 TAGGATTGGTAGCACGTGGAGGGGGACCCAGTCGATCCTTGGCTTGCGCATCCTGCCCCTCTGGC
772 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
11564706 TGGCTGAGCACCCGCATGCTTGTTTCTTAGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTA
837 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
11564771 A
902 A
* * * ** * * *
11564772 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCACATGATGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
11564837 CTCGGGCATGTGTTGGTGCTACATTTTTCTTCGTTGGGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
11564902 ACCTGACCGACGGCTTTCGGGTTCCGACGATCGGGAGGGCTGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGC
** *
11564967 GATGGGTGCCAGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
11565032 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAAT
* * * *
11565096 AGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTATTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
11565161 TGCATGCCAA-AAAAATACAAAGATCACGCCTACCAAGTTTGGGGCCAAAAGTACTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
11565225 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
11565290 GCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
11565355 TTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCAC-GCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
11565419 CATCCCGTCTCCCTGGCCGGTGTTGTGCCTGCCCACCCGCCTGCCCGCTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGACCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * *
11565484 TTAGGCATACGGAGTTCATTTCCAGTCTAAGATCATACCGGACCGAAGGTTAC-AT-GACAGGAT
714 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAG-CAGGAT
* * * * ** * * * * *
11565547 CAGTAGCACACAGAGGTGGACTTGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGACTG
778 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* ** *
11565612 AGCACCCGCATGCTCGTTTAATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
843 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11565672 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCAGCAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11565737 CTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
11565802 ACCTGACCGGCGGCATTGGGGTTCCGATGATCAGAGGGCCGGGGGGGTGTGCGCA-AGTGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACA-TGATGTG
* * * *
11565866 CGATGTGTTCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
11565931 ACCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCCGTAGCCATTAATGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11565996 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
11566061 TGCATGGCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGAGCCAAAAGTACTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
*
11566126 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
11566191 GCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
11566256 TTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGATTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * ** * * ** * * *
11566321 CATCCCGTCTCTCTGGCCGACGTTGTGCCCACCCGTCCGCCTGCTTGTTTGTTTCATCGGTTGGC
649 CATCCCGTCTCTCTGACCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * * *
11566386 TTAGGCATAC-GAAGTTCATTCCCAGTATAAGATCAAACTAGACTGAGGGTGGTGATAGTAGGAT
714 TTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT
* ** * * *
11566450 CGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
11566515 AGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11566575 GCATATGGACTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
11566640 CTCGAGCATGTGTTGGTGTC-AATTTTTTCTTCGTCGGGGCAGCATCGTCGAAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* ** *
11566704 AACCTGACCGACGGCATTGGCGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACAAGATGTGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
11566769 GATGGGTACCGATACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
11566834 CCCCCTTAAGGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
11566899 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** *** **** * *
11566964 GCAAGCCAAGAAGGATACAAGGATTGTGTCTACCAAGTTTGGAATGAAAACTCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * *
11567029 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATCGAAAACGAGTCTTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
11567094 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGAAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
11567159 TGGCACACAAAAATATGAAGATCTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
11567224 ATCCCGTCTCTTTGGCTGGCGTAGTG-CTCGCCCGCCCCGCCCGCCCACTCGTTTCGTCGGTTGG
650 ATCCCGTCTCTCTGACCGGCGTAGTGCCT-GCCCG-CCCGCCCGCCCGCTCGTTTCGTCGGTTGG
** * ** ** * *
11567288 CTTAGGCATGGAGAGTTCATTCCTAGTCTAAGATTGGAATAGACTGAGGGTTGTGGTAGCAGGAT
713 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT
** ** * * * * *
11567353 CAACAGCACGCAGAGGGGGACTTGGCCGATCCTCGGCCTACGCATCCCGCCTCTCTGGTCGGTTG
778 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
11567418 AGCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATAC-G-G---------AG--T--
843 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11567463 ---T-C--A-TTC--T--CAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11567517 CTCAGGCATTTGTTGGTGCCGCATTTTTCCTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * * * *
11567582 ACCTGAGTGGCGGCATTTGGGTTCCGGCGTTCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
11567647 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
11567712 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
11567777 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
11567842 GCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCCAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
** * *
11567907 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTA
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
11567972 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTAAAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
11568037 TAGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** * ** * * **
11568102 ATCCCATCTCTCTGACCGGCATTTTGCCCGCCCTTCCGTCCGCCCGCTCATTTCGTCAATTGGCT
650 ATCCCGTCTCTCTGACCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** ** * ** *
11568167 TAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGTAAAAGAGATT
715 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAG-GATC
* * ** *
11568232 GGCAGCATGTAGAGGGGGACCCGGCTAATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGA
779 GGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
11568297 GCACCCGTACACTCATTTCGTGGGTGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
844 GCACCCGCACGCTCGTTTCGT-GG-G-T-----T---GA---C-TT---AG-----GCATACGGA
11568362 GTTCATTCCCAGTCTAA
886 GTTCATTCCCAGTCTAA
* * * * * *
11568379 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGTAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** * *
11568444 TTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGTGTTGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
11568509 ACCTGACCGGCGGCATTAGGGTTCCGACGATGGGGGGGCCGGGGGGATGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGC
* *
11568574 GATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
11568639 CGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
11568704 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** *** **** * *
11568769 GCAAGCCAAGAAGGATACAAGGATTGTGTCTACCAAGTTTGGAATGAAAACTCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * *
11568834 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATCGAAAACGAGTCTTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
11568899 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGAAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
11568964 TGGCACACAAAAATATGAAGATCTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
11569029 ATCCCGTCTCTTTGGCTGGCGTAGTG-CTCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGC
650 ATCCCGTCTCTCTGACCGGCGTAGTGCCT-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** * ** ** * *
11569093 TTAGGCATGGAGAGTTCATTCCTAGTCTAAGATTGGAATAGACTGAGGGTTGTGGTAGCAGGATC
714 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATC
** ** * * * * *
11569158 AACAGCACGCAGAGGGGGACTTGGCCGATCCTCGGCCTACGCATCCCGCCTCTCTGGTCGGTTGA
779 GGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
11569223 GCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATAC-G-G---------AG--T--
844 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11569267 ---T-C--A-TTC--T--CAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11569321 CTCAGGCATTTGTTGGTGCCGCATTTTTCCTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * * * *
11569386 ACCTGAGTGGCGGCATTTGGGTTCCGGCGTTCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
11569451 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
11569516 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
11569581 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTTGCAGAATTTTTTTTG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTG
* * *
11569646 TGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
** *
11569711 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
11569776 ACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTA-AGAGCCATAAAAATGGC
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGC
* * *
11569840 ATTAGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** * * **
11569905 GCATCCCATCTCTCTGACCGGCAT-GTTGCCCGCCCTTCCGTCCGCCCGCTCATTTCGTCAATTG
648 GCATCCCGTCTCTCTGACCGGCGTAG-TGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** * **
11569969 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGTAAAAGAG
712 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAG-G
* * ** *
11570034 ATTGGCAGCACGTAGAGGGGGACCCGGCTAATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGC
776 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
11570099 TGAGCACCCGTACACTCATTTCGTGGGTGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
841 TGAGCACCCGCACGCTCGTTTCGT-GG-G-T-----T---GA---C-TT---AG-----GCATAC
*
11570164 AGAGTTCATTCCCAGTCTAA
883 GGAGTTCATTCCCAGTCTAA
* * * * *
11570184 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** * *
11570249 TTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGTGTTGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
11570314 ACCTGACCGACGGCATTAGGGTTCCGACGATGGGGGGGCCGGGGGGATGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGC
* *
11570379 GATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
11570444 CGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
11570509 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTCAGCTGAAGTTTTTTTG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTG
* * *
11570574 TACATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * * *
11570639 ATTTAAAAAAATCTCGAGCCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
11570704 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
11570769 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCA
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
11570834 CATCCCGTCTCTCTAACCGGCATAGTGCTCGCCCGCCCGCCAGCCCGCCGCCCGCCCGCTCATTT
649 CATCCCGTCTCTCTGACCGGCGTA--G-T-GCCTG--C-CC-G--C-CCGCCCGCCCGCTCGTTT
* * * * * * ** * *
11570899 CGTTGGTCGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATTAGATCATTCTGAGGGTTGTG
703 CGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * * * * ** * * * * * * *
11570964 GCAGCAGCATCTGTAGGACATAGAAGAGGACCTGGTCGATACC-CGACTTGCGCATCTCGACCCT
768 GTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT-CCTCGGCTTGCGCATCCCGCCCCT
* * *
11571028 CTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCA
832 CTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
11571093 GTCTAA
897 GTCTAA
*** *
11571099 G-AT-C--AG---------A--C------C--A---GACCGAGGGTTGCAATAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * * *
11571138 CTCGAGCATGTGCTGGTGCTGCGTTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACTGGGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
11571203 ACCTGACCGACGGCATTGGCGTTCTGACGATCGGAGGGGCCAGGGGGTGTGCCCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
11571268 GATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* **
11571333 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGAAATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** *
11571398 GGGACACTTTATTT-AGTTGGTCACATAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGACACTTT-TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * *
11571462 TGCATGAAAAC-AAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *** *** ** *** * * *
11571525 A---TAGAAAA---CGAGCCGT--CTTGCCACGAAACTTCACTTGAAGGCT---TAA-GGGAC--
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAAATCA--TGAAAAATAGAAAACGAGTCGT
* * * * * * ** * *
11571576 CATTG-TATG-AA-TTTAC---AAGCCATAA---A--AATG---GCATTGGC-A--CGTAGAAAT
516 C-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* **** * * * *
11571624 ---A-T-G-A---AG--ATGTGCCTAA-ACCCACCTACCACCCTATCGATCCACAGCT-TGCGCA
580 GGCATTGGCACGCAGAAATATG---AAGATGTGCCTA-AACCC-ACCTA-CCAC-CCTAT-CG-A
* * * * * * * ** * * ** ** *
11571676 TTC-CGTC-T-CTC-TGGCCGGC-GT-GGAGCC--CG-ACCGCCCGCTCGCCCGCTTGTTTC-AT
636 TCCACGGCTTGCGCAT-CCCGTCTCTCTGA-CCGGCGTAGTGCCTGCCCGCCCGCCCG-CCCGCT
* * * * * * * * ** *
11571731 CGGTT-G--GCTTACGCATACGG-AGTTC--ATTCCTAGTCTAAGATC--AGACCGA-ACCAAGG
698 CGTTTCGTCGGTT-GGCTTA-GGCA-TACAGAGTTC-ATTCCCAG-TCTAAGATC-AGACC-A-G
*** * * * ** * ** *** * *** **** *
11571787 GTTGCGGTAGTAG-GATCAGCAACA-C-GCAG-AGGGGGA-CCCGATCAATCCCCGGCTTGTGCA
755 ACCGAGG--GTTGCGGT-AGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCG-GC-
** * * *** * * * * ** * * * **
11571847 TCCCGC-CCCTCTGGCGGACTGAG-CGCCCGTA-CGCTCGTTTCG-TGGGTTGACTTAGGCAT-A
815 TTGCGCATCC-C-GCCCCTCTG-GCCGGCTG-AGCACCCG-CACGCT-CGTT-TCGT-GGGTTGA
* * * * ** *
11571907 -TT--G-AGTTC--ATTCCCAATCTAAG-CATAC
872 CTTAGGCA-TACGGAGT-TCATTCCCAGTC-TAA
* * * ** * * *
11571934 GGAGT--T--G---ATTCCCAGTCTAAGATC-AAGCCAAACTGATGGTTGTGGCAGCACATGCTG
1 GCA-TACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * * ** *
11571991 GGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGTTGGG
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * *
11572056 GAACCT-AACTACCGGCATTGGGGTTCCGTCGATTGGGGGGCCGAGGGGTGTGCAG-ACATGATG
129 GAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC-GCACATGATG
* * * *
11572119 TGCGATGTGTGCTGGAACTTGGCCCTTATATTCGCCCCCTATCCCACATCAAACCTC-AGGAACT
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACT
* * * * * *
11572183 TAGACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGATGCCAGTGGCCATTAAAGTGTATGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
11572248 AATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTATTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
11572313 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* *** * *
11572378 AAAATTTTAAAAAAATCACGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
451 AAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
11572443 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
11572508 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
11572573 TGCGCATCCCGTCACTCT-A---GC-TAGTG--T-ACTGCCCGCCCGCCCGCTCGTTTTGTCGGT
645 TGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
** * * **
11572630 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGACAGCAG
710 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAG
* * * * * * *
11572695 GATTGGCAGCACACAGAGAGGGACCCGGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*** * *
11572760 CTGAATGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAA
840 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*** * * *
11572823 GCATATAAAGTTCATTCCCAGTCTAAGATCGGACTGGACCTAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11572888 CTCGGGCATGTGCCGGTGCCTCATTTTTCTTCGCCGGGGCACCATCGTCGAAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
11572953 ACCTGACCGACGGCATTGGGGTTTCGATGATCGGGGGGCCCGGGGGTGTGCACACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
11573018 ATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
11573083 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
11573148 GGACACTTTTTTCAAATGGTCACAAAATATTGTACTCTTCAAGTTTTTAGCTGAAATTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
11573213 CATGCCAACAAATATACAAGGATAATGTCTACCAAGTTTGGGGCTAAAACTC
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
11573265 GTAATTTTAG
Statistics
Matches: 10899, Mismatches: 1568, Indels: 946
0.81 0.12 0.07
Matches are distributed among these distances:
833 1 0.00
834 17 0.00
835 26 0.00
836 24 0.00
837 26 0.00
838 20 0.00
839 3 0.00
840 4 0.00
841 1 0.00
842 2 0.00
844 6 0.00
848 5 0.00
849 1 0.00
850 9 0.00
851 11 0.00
852 9 0.00
853 11 0.00
854 213 0.02
855 152 0.01
856 6 0.00
859 8 0.00
860 5 0.00
861 1 0.00
862 10 0.00
863 4 0.00
864 8 0.00
865 293 0.03
866 299 0.03
867 6 0.00
868 5 0.00
869 29 0.00
870 11 0.00
873 24 0.00
874 4 0.00
875 5 0.00
876 6 0.00
877 643 0.06
878 897 0.08
879 86 0.01
880 11 0.00
881 21 0.00
882 162 0.01
883 140 0.01
884 162 0.01
885 76 0.01
886 79 0.01
887 98 0.01
888 178 0.02
889 384 0.04
890 360 0.03
891 272 0.02
892 236 0.02
893 356 0.03
894 352 0.03
895 572 0.05
896 42 0.00
897 5 0.00
898 1 0.00
899 11 0.00
900 483 0.04
901 759 0.07
902 576 0.05
903 476 0.04
904 6 0.00
905 124 0.01
906 128 0.01
907 8 0.00
908 57 0.01
909 68 0.01
910 144 0.01
911 7 0.00
912 28 0.00
913 90 0.01
914 3 0.00
915 28 0.00
918 1 0.00
919 1 0.00
920 4 0.00
921 1 0.00
922 1 0.00
923 7 0.00
924 5 0.00
925 3 0.00
926 88 0.01
927 666 0.06
928 574 0.05
929 1 0.00
930 1 0.00
931 2 0.00
932 5 0.00
934 1 0.00
935 3 0.00
936 1 0.00
937 2 0.00
938 66 0.01
939 72 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGACCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11563907 original size:28 final size:30
Alignment explanation
Indices: 11563851--11563907 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
11563841 GTGACTTAGG
*
11563851 CATACGGAGTCTCATTCCCCAGCTCTAAGC
1 CATACGGAGTCTCATTCCCAAGCTCTAAGC
11563881 CATACGGAGT-TCATTCCCAAG-TCTAAG
1 CATACGGAGTCTCATTCCCAAGCTCTAAG
11563908 ATCGGAATCG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 6 0.23
29 10 0.38
30 10 0.38
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (30 bp):
CATACGGAGTCTCATTCCCAAGCTCTAAGC
Found at i:11564784 original size:26 final size:26
Alignment explanation
Indices: 11564748--11564798 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11564738 TGACTTAGGT
11564748 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
11564774 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
11564799 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:11565675 original size:26 final size:26
Alignment explanation
Indices: 11565646--11565698 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11565636 GTTGACTTAG
11565646 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
11565672 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11565698 G
1 G
11565699 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11566578 original size:26 final size:26
Alignment explanation
Indices: 11566549--11566601 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11566539 GTTGACTTAG
*
11566549 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
11566575 GCATATGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
11566601 G
1 G
11566602 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:11568278 original size:878 final size:876
Alignment explanation
Indices: 11557653--11571526 Score: 15133
Period size: 878 Copynumber: 15.5 Consensus size: 876
11557643 CCCAGTCTAA
** * * * * *
11557653 GCATACAGG-GTTCATTCATAGTCTAAGATTAGACCAGACTGAGGGTTACGGCAGCACATGTTGG
1 GCATAC-GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGG
* * ** * *
11557717 GCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTTGTCAGGGCACCATCACCGGAGCATCGTCAGA
65 GCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * * *
11557781 GAACTTGACCGGCAGCATTTGGGTTCCGGCGATCGAGGGCGCCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
** *
11557846 TGCGATTTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
11557911 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
11557976 ATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
11558041 TGTTCATGCCAACAAAAATACAAGGATCACTTCTACCATGTTTGGGGCCAAAAATCCTTCCGAAA
388 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
*** ** *
11558106 AAATTTT-AAAAATCTTAAATTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11558170 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
11558235 CATTGGCATGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCAATCCATGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
11558300 CGCATCCCGTCTCTCTGGCTGGCGTAGTGCCTGCTCGCCCGCCCGTCCACTCATTTTGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * ** *
11558365 GCTTAGGCATACGGAGTTCATTCCCAGTCTAA-A-TAGACCGGAATGAGGGTTGTGGTAGCAGGA
712 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGGTAGCAGGA
* ** * * * * * * *
11558428 TCGGAAGCATACAGAGGAGGACCC-GATCCATCC-CTGACTTGCCCATCCCACCCCTCTGGCCGA
777 TCGGCAGCACGCAGAGGGGGACCCGGCT-GATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
11558491 CTGAGCGCCTGCATGCTCGTTTTCGTAGGTTGACTTAG
840 CTGAGCGCCCGCACGCTCG-TTTCGTGGGTTGACTTAG
*
11558529 GCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-T---AAG---------A-TC----A---GACCGGAC
* * * * * *
11558594 CGAGGGTTGCGGCAGCACATGCTGGGCTC-GAGCATGTGCT-GTGTCACATTTTTCTTC-ACCGG
40 CGAGGGTTACGGTAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * *
11558656 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGG
104 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
** *
11558720 GCCGGGGGGTGTGCATAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
169 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
11558785 TCCCTCATCAAACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
234 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
**
11558850 CCAGTAGCCATTAAAGTGTCCCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
11558915 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
364 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * *
11558980 TTGGGGCCAAATA-TCCTTTCAAAAAAATTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAAT
429 TTGGGGCCAAA-ACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* *
11559044 CGTGAAAAATAGAAAACGAGTTGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
492 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
11559109 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
11559174 TACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGGTGTAGT----GCCCACCC
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * *
11559235 GCCCGCCCACTCATTTCGTCGGTTGGCTTAGGCATAC-GAAGTTCATTCCCAGACTAAGATTGGA
687 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATTAGA
** * * * * * * * *
11559299 CCAGACAGAGGGTTGCAGTAGCAGGATCGGCAACACGCAAAGGAGGACCCGACCGATCCTCAGCT
751 CTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCTCGGCT
* * * * * *
11559364 CGGGCATCCCACCCCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTTG
816 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * **
11559425 GCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* * * * * *
11559490 CTCGGGCATCTGCAGGTGCAGCATTTTTCTTCGTCGGGGCACAATCG-CTGGAGCATCGCTGGAG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAG
* * *
11559554 AACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGCGTCGAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GGC-CGGGGGGTGTGCGCACATGATG
* *
11559619 TCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
11559684 ACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
11559749 ACGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTTAGATGAATGTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
11559814 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
388 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAA
* *
11559879 AAATTTTAAAAAATCCCTAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11559944 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
**
11560009 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
11560074 CGCATCCCGTCTCTCTGGTCAGTGTAGTGACCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** * * * *
11560139 GCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGCGTTGCGGCAACAGG
712 GCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGGTAGCAGG
* * * * * *
11560203 ATCGGTAGCACGCAGAGGGGGACCCGG-TCGATCCCCGGCTTGTGGATCCCACCCCTCTGGCCAG
776 ATCGGCAGCACGCAGAGGGGGACCCGGCT-GATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
11560267 TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAGTTAG
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
11560304 GCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAAC
1 GCATACGGAGTTCATTCCCA--GT---C-TA---AG---------A-TC--AGACCGG-----AC
** * * *
11560369 CGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-TCTGGG
40 CGAGGGTTACGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG
*
11560433 GCACCATCGT-----C-T-----GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
104 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
*
11560487 GCCGAGAGGGGTGTGCACACATGATGTGCGATGGGT-CTGGTACTTGGCCCTTATATTGGCCCCC
169 GCCG-G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
11560551 TATCCAC-CATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
232 TATCC-CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
11560615 CTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
296 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
11560680 CACTTCGACTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATTACGTCTACCA
361 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * **
11560745 AGTTTTGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCTTAAAAATGTTTCAAA
426 AGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-GTTTCAAA
*
11560810 AAACGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
489 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
11560875 TGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
554 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * ** *
11560940 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTTTCTCTCACCGGCGTAGTGCCTGCCCG
619 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * * *
11561005 CCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCTTACATAGTTCATTCCCTGTCTAAGATCA
684 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTA
** * * * * * * * *
11561070 GACCAGACCGAGGGATGCAGTAGTAGGATCGACAG-ACGTA-TGGGGGACCCGACCGATCCTCGG
749 GACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCTCGG
* * * * * *
11561133 CTTGGGCATCCCGCCTCTTTGGTCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAG
814 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
11561196 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGTGTTCATTCCCAGTCTAAGATCGGACCGGAT
1 GCATACGGAGTTCATTCCCAGTCT----A-A----G---------A-TC----A---GACCGGAC
* * **
11561261 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
40 CGAGGGTTACGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
11561326 CACCATCGTCGAAGCATCGCCAGAGAACCTGACCGACGGGATTGGGGTTCCGACGATC-GGGGGG
105 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * *
11561390 CCGGGGGGTGTACGCTCATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTAT
170 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
11561455 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
11561520 CAGTAGCCTTTAAAGTGTCTCAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
11561585 TCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAACAAAAATACAAGGATTACGTCTACCAAGTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
11561650 TGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAATGTTTCAGAAATC
430 TGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-GTTTCAAAAATC
*
11561715 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
493 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
11561780 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
11561845 ACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGTCGGCGTAGT--------GCCCG
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * *
11561902 CCCGCCCGCTCGTTCCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACT
688 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACT
* * * * * * * * * *
11561967 GGATTC-AGGGTTACGGGAGCAAGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGTTT
753 GGA-CCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCTCGGCTT
* * * * * * *
11562031 GCACATCCCGCCCCTCTGGTCGACTGAGCGCCTGCACGCTCATTTTGTGGTTTGACTTAG
817 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
11562091 GCATACGGAGTTCATTCCTAGTCTAAGAT---A-CGGATCGAGGGTTGCGGTAGCACTTGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* * *
11562152 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCATCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
11562217 ACCTGA-CGAGCAGCATTAGGGTTCCGGCGGTCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCG-GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
11562281 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
11562346 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
11562411 GCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTAAATCTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
11562476 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCACA-TTTGGGGCCAAAACTCCTTTCGAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCC-TTCCAAAA
* * * * * * *
11562540 AATTTTAAAAAATCTCGAGCCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCATCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
11562605 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
11562670 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * *
11562735 ACATCCCGTCTCTCTAACCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCCCGATCATTTCGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * *
11562800 TCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA-TCGTACCGAGGGTTGTGGCAGC
709 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACT-GGACCGAGGGTTGCGGTAGC
** * * * * * * * *
11562864 AACATCGGTAGGACACAGAAGGGGACCTGG-TCGATACC-CGACTTGCGCATCTCGACCCTCTGG
773 AGGATCGGCAGCACGCAGAGGGGGACCCGGCT-GAT-CCTCGGCTTGCGCATCCCGCCCCTCTGG
*
11562927 CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
836 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ***
11562968 GCATACGGAGCTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAACAGCACATGCTGG
1 GCATACGGAG-TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGG
* * * * ** * *
11563033 GCTCAGGCATGTGCTGGTGCCTCATTTTTTTTCATCGAGGCACCATCACCGGAGCATCGTCGAAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
11563098 AACCTGACTGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGAGGTGTGCGCGCATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGG-GGTGTGCGCACATGATG
*
11563163 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
11563228 ACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTCTCTGCCAGTAGCAATTAAAGTGTCCTC
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-GCTGCCAGTAGCCATTAAAGTGT-CTG
*
11563293 AAATGGGGACAC-TTTTTC-AATGGTCACAAAATCTTTGTACACTTCGA-TCTTTCAGCTGAATT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTACACTTCGAGT-TTTTAGCTGAATT
* * * * * * * * *
11563355 TTTTTATGCATTCCAAAAAAATTACAAGG-TCACCTTTAGCCCAAGGTTGCCGACC-AAATTCCT
384 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA--CCAAGTTTG-GGGCCAAAACTCCT
* * * ** **
11563418 TCCGAAAAAATTTTAAAAAAGACCC-AACCGCAAAGAGTTTTTGAAACCTTATGAAAAAATAGAA
446 TCC-AAAAAATTTTAAAAAA-TCCCGAACCGCAAAAAG--TTTCAAAAATCGTG-AAAAATAGAA
* *
11563482 AACGAGTCATCTTCGGCCATGAAACTT--CGTGAA-GCTTAAGGGACGATTGTATGAATTTACAA
506 AACGAGTCGTCTT--GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
11563544 GCCATAAAAATGGCATTGGTACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAGC
569 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * ** * * * **
11563609 GATCCACGGCTTGCGCATCCCGTGTCTCTAGCCGGCAT-GTGCCTTCCTGTCTGCCTACCCGCTC
634 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTC
* * * * * * * *
11563673 ATTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATCAGACCGAACTGAGGGT
699 GTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGT
*** * * * * *
11563738 TGCACCAGCAAGATCGACAGCACACAGAGGGGGACCCGACCGATCC-CTGGCTTGCGCATCCCGC
764 TGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCTC-GGCTTGCGCATCCCGC
* * * * *
11563802 CCCTCT-ACCGGTTTAGCGCCTGCAGGCTTCGTTTCGTGGG-TGACTTAG
828 CCCTCTGGCCGGCTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAG
11563850 GCATACGGAGTCTCATTCCCCAGCTCTAAGCCATACGGAGTTCATTCCCAAGTCTAAGATCGGAA
1 GCATACGGAGT-TCATT-CCCAG-TCTAAG--AT-C--AG----------A--C------CGG-A
* * * * *
11563915 TCGAACGAGGGTTGC-GTACACACATGCTGGGACTCGGGCATGTGCTGGTGCTGCATTTTTCGTC
39 -C---CGAGGGTTACGGTA-GCACATGCTGGG-CTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * **
11563979 ATCGGGGCACCATCG-CATGAGCATCGCTGGAGAACCTGACCGGCGGCATTAGGGTTCCGGTGAT
98 GTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* * *
11564043 AGAGGGGGCC-GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG
162 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
11564107 CCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
227 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
11564172 TTTGCT-CTCGGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
292 TTTGCTGC-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
11564236 TTTTACACTTCGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAACAAAAATTCAGGGATCACGTC
356 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* * * * * *
11564301 TACCAAGTTTGTGTCTAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT
421 TACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
** *
11564366 TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGA
485 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
11564431 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
550 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* * * *
11564496 ACCCACCTACCACCCTATCGATCCATGACTTGTGCATCCCGTCTCTCTGGCCGACGTA-------
615 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
11564554 ---G--CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
680 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * * * * * * * * ** *
11564614 ATCAGACCGGATCAAGGGTTGTGGCAGTAGGATTGGTAGCACGTGGAGGGGGACCCAG-TCGATC
745 ATTAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCT-GATC
* * * * * *
11564678 CTTGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGCATGCTTGTTTCTTAGGTTGACT
809 CTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC----G-TG---
11564743 TAGGTATACGGAGTTCATTCCCAG
866 --GGT-T---GA---C-TT---AG
* * *
11564767 TCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCACATG
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATG
* * * * ** * * *
11564832 ATGTGCTCGGGCATGTGTTGGTGCTACATTTTTCTTCGTTGGGGCACCATCGCCAGAGCATCGCC
61 CTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC
* * * * *
11564897 GGAGAACCTGACCGACGGCTTTCGGGTTCCGACGATCGGGAGGGCTGGGGGGTGTGCGCACATGA
126 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* ** *
11564962 TGTGTGATGGGTGCCAGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
11565027 TCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TC
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-
* * * *
11565091 GAAATAGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTA
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
11565156 TTTTGTGCATGCC-AAAAAAATACAAAGATCACGCCTACCAAGTTTGGGGCCAAAAGTACTTTCG
385 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCC
*
11565220 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
11565285 GTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
11565350 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCAC-GC
579 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
11565414 TTGCGCATCCCGTCTCCCTGGCCGGTGTTGTGCCTGCCCACCCGCCTGCCCGCTCGTTTCGTCGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * * * *
11565479 TTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCATACCGGACCGAAGGTTAC-AT-GAC
709 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGGTAG-C
* * * * ** * * *
11565542 AGGATCAGTAGCACACAGAGGTGGACTTGG-TCGATCCCCAGCTTGCGCATCCCACCCCTCTGGC
773 AGGATCGGCAGCACGCAGAGGGGGACCCGGCT-GATCCTCGGCTTGCGCATCCCGCCCCTCTGGC
* * * **
11565606 CGACTGAGCACCCGCATGCTCGTTTAATGGGTTGACTTAG
837 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
11565646 GCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------CGGA-C----
* * * * *
11565711 CGAGGGTTGCAGCAGCACAAGCTGGGCTC-GAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGG
40 CGAGGGTTACGGTAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * *
11565775 GCACCATCGCCGGAGCATCGCCAGAGCACCTGACCGGCGGCATTGGGGTTCCGATGATC-AGAGG
104 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* * *
11565839 GCCGGGGGGGTGTGCGCA-AGTGATGTGCGATGTGTTCTGGTACTTGGCCCTTATATTGGCACCC
169 GCC-GGGGGGTGTGCGCACA-TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
11565903 TATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGC
232 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
11565968 TACCCGTAGCCATTAATGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
297 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
11566033 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCTCGTCTACCAA
362 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * *
11566098 GTTTGGAGCCAAAAGTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
427 GTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* * *
11566163 TCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTG
491 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
11566228 TATGAATTTACAAGCCATAAAAATGGTATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCAC
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
** * * * *
11566293 CTACCACCCTATCGATCCACGATTTGCGCATCCCGTCTCTCTGGCCGACGTTGTGCCCACCCGTC
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* ** * * * * * *
11566358 CGCCTGCTTGTTTGTTTCATCGGTTGGCTTAGGCATAC-GAAGTTCATTCCCAGTATAAGATCAA
686 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATTAG
* * * * * * * * *
11566422 ACTAGACTGAGGGTGGTGATAGTAGGATCGGTAGCACGCAGAGGGGGACCC-GATCGATCCCCGG
750 ACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCT-GATCCTCGG
* * * * *
11566486 CTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGTACGCTCATTTCGTGGGTTGACTTAG
814 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
11566549 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGACTTCATTCCCAGTCTAAGATCAGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCT----A-A--G-----------A-TC--AGA-C---C-GGAC
* * * *
11566614 CGAGGGTTGCGGTAGCACATGCTGGGCTC-GAGCATGTGTTGGTGTC-AATTTTTTCTTCGTCGG
40 CGAGGGTTACGGTAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCA-TTTTTCTTCGTCGG
* * * * * **
11566677 GGCAGCATCGTCGAAGCATCGTCGGAGAACCTGACCGACGGCATTGGCGTTCCGGTGATC-GGGG
103 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
* * * * *
11566741 GGCCGGGGGGTGTGCGCACAAGATGTGCGATGGGTACCGATACTTAGCCCTTATATTGGCCCCCT
168 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
11566806 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTATAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
11566871 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * ** ***
11566936 CTTGGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAGAAGGATACAAGGATTGTGTCTACCAAG
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
****
11567001 TTTGGAATGAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
428 TTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * *
11567066 CATGAAAAATCGAAAACGAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
492 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * * * *
11567131 CTGAATTTACAAGCCATAAAAATGGAATTGGCACACAAAAATATGAAGATCTACCTAAACCCACC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
11567196 TACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGGCTGGCGTAGTGCTCGCCCGCCC
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC
* ** * *
11567261 CGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATGGAGAGTTCATTCCTAGTCTAAGATTGGA
686 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGA
* * * * ** ** * *
11567326 ATAGACTGAGGGTTGTGGTAGCAGGATCAACAGCACGCAGAGGGGGACTTGGCCGATCCTCGGCC
751 CTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCTCGGCT
* * * * * * *
11567391 TACGCATCCCGCCTCTCTGGTCGGTTGAGCACCCACACGCTCGTTTTGTGGGTTGACTTAG
816 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
11567452 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* * * *
11567517 CTCAGGCATTTGTTGGTGCCGCATTTTTCCTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * * *
11567582 ACCTGAGTGGCGGCATTTGGGTTCCGGCGTTCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
11567647 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
11567712 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
11567777 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
11567842 GCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCCAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAA
* * * *
11567907 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTA
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
11567972 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTAAAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
11568037 TAGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * ** ** * * **
11568102 ATCCCATCTCTCTGACCGGCATTTTGCCCGCCCTTCCGTCCGCCCGCTCATTTCGTCAATTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** *
11568167 TAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGTAAAAGAGATT
715 TAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGGTAGCAG-GATC
* * * *
11568232 GGCAGCATGTAGAGGGGGACCCGGCTAATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGA
779 GGCAGCACGCAGAGGGGGACCCGGCTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
11568297 GCACCCGTACACTCATTTCGTGGG-TG--TTAG
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * * * **
11568327 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACGG-AGTT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CAGA---C---CGGA-CCGAGGGTTACGGTAG--
* * * * *
11568391 CATTCCCA-GTCTAAGATCGGAC-CAGACCAAGGGTTACGGTAG-CACATTCTAGGTTCGGGCAT
55 CA----CATG-CT--G---GG-CTCAG-GCATGTGCT--GGT-GCCGCATT-T---TT----C-T
* * * * *
11568453 GT-GTTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGTGTTGCCAGAGAACCTGACC
96 -TCGTCGG-G--GCA----CCATCGTC--GG-AGCATCGCC--------G---GAGAACCTGACC
*
11568517 GGCGGCATTAGGGTTCCGACGAT-GGGGGGGCCGGGGGGATGTGCGCACATGATGTGCGATGGGT
139 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGT
* * *
11568581 GCTGGTACTTGGCCCTCATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACGCCCTT
203 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
11568646 AAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACAC
268 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
11568711 TTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCAAGCC
333 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* ** *** ****
11568776 AAGAAGGATACAAGGATTGTGTCTACCAAGTTTGGAATGAAAACTCCTTCCAAAAAAATTTTAAA
398 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAA
* * *
11568841 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATCGAAAACGAGTCTTCTTGCCATGAA
462 AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
11568906 ACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGAATTGGCACA
527 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
11568971 CAAAAATATGAAGATCTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGT
592 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
11569036 CTCTTTGGCTGGCGTAGTGCTCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAT
657 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
** * * * * * * **
11569101 GGAGAGTTCATTCCTAGTCTAAGATTGGAATAGACTGAGGGTTGTGGTAGCAGGATCAACAGCAC
722 ACAGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
** * * * * * * * *
11569166 GCAGAGGGGGACTTGGCCGATCCTCGGCCTACGCATCCCGCCTCTCTGGTCGGTTGAGCACCCAC
787 GCAGAGGGGGACCCGGCTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
*
11569231 ACGCTCGTTTTGTGGGTTGACTTAG
852 ACGCTCGTTTCGTGGGTTGACTTAG
* *
11569256 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* * * *
11569321 CTCAGGCATTTGTTGGTGCCGCATTTTTCCTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * * *
11569386 ACCTGAGTGGCGGCATTTGGGTTCCGGCGTTCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
11569451 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
11569516 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
11569581 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTTGCAGAATTTTTTTTG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTG
*
11569646 TGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAA
* * *
11569711 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
11569776 ACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTA-AGAGCCATAAAAATGGC
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGC
* * *
11569840 ATTAGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** * * **
11569905 GCATCCCATCTCTCTGACCGGCAT-GTTGCCCGCCCTTCCGTCCGCCCGCTCATTTCGTCAATTG
648 GCATCCCGTCTCTCTGGCCGGCGTAG-TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * **
11569969 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGTAAAAGAG
712 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGGTAGCAG-G
* * * *
11570034 ATTGGCAGCACGTAGAGGGGGACCCGGCTAATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGC
776 ATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
11570099 TGAGCACCCGTACACTCATTTCGTGGG-TG--TTAG
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* **
11570132 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CC-G---GA-CCGA-GG-GTT-
* * * * *
11570197 ATTCCCAGTCTAAGATCGGACCA-GACCAAGGGTTACGGCAGCACATTCTAGGTTCGGGCATGTG
48 A----C-G-GT-AG--C--A-CATG--C-TGGG---C-TCAG-GCA---T--G-T-GC-------
* * * ** * * *
11570261 TTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGTGTTGCCAGAGAACCTGACCGACG
79 -TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCG
*
11570326 GCATTAGGGTTCCGACGAT-GGGGGGGCCGGGGGGATGTGCGCACATGATGTGCGATGGGTGCTG
143 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTG
* * *
11570390 GTACTTGGCCCTCATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACGCCCTTAAAG
207 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
11570455 AGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTT
272 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * *
11570520 TTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTCAGCTGAAGTTTTTTTGTACATACCAAC
337 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAA
*
11570585 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAA
401 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAA
* * * * * *
11570650 TCTCGAGCCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
465 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
11570715 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
530 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
11570780 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCACATCCCGTCTC
595 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
** * * * *
11570845 TCTAACCGGCATAGTGCTCGCCCGCCCGCCAGCCCGCCGCCCGCCCGCTCATTTCGTTGGTCGGC
660 TCTGGCCGGCGTA--G-T-GCCCG--C-CC-G--C-CCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * *
11570910 TTAGGCGTACGGAGTTCATTCCCAGTCTAAGATTAGATCAT--TCTGAGGGTTGTGGCAGCAGCA
714 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGA-C-TGGACCGAGGGTTGCGGTAGCAGGA
* * * ** * * * * * * *
11570973 TCTGTAGGACATAGAAGAGGACCTGG-TCGATACC-CGACTTGCGCATCTCGACCCTCTGGCTGG
777 TCGGCAGCACGCAGAGGGGGACCCGGCT-GAT-CCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
11571036 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** *
11571073 GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAATAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* * ** * * * *
11571138 CTC-GAGCATGTGCTGGTGCTGCGTTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACTGGGG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * * *
11571202 AACCTGACCGACGGCATTGGCGTTCTGACGATCGGAGGGGCCAGGGGGTGTGCCCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
11571267 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* **
11571332 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGAAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
11571397 GGGGACACTTTATTT-AGTTGGTCACATAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 GGGGACACTTT-TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
11571461 GTGCATG--AAAACAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
389 GTGCATGCCAAAA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
11571524 AAT
453 AAT
11571527 AGAAAACGAG
Statistics
Matches: 11140, Mismatches: 1386, Indels: 934
0.83 0.10 0.07
Matches are distributed among these distances:
864 2 0.00
865 286 0.03
866 296 0.03
867 2 0.00
868 1 0.00
870 40 0.00
871 16 0.00
872 55 0.00
873 3 0.00
874 31 0.00
875 500 0.04
876 52 0.00
877 577 0.05
878 919 0.08
879 274 0.02
880 4 0.00
881 6 0.00
882 163 0.01
883 150 0.01
884 156 0.01
885 87 0.01
886 66 0.01
887 58 0.01
888 155 0.01
889 315 0.03
890 333 0.03
891 253 0.02
892 182 0.02
893 342 0.03
894 360 0.03
895 293 0.03
896 54 0.00
897 103 0.01
898 279 0.03
899 229 0.02
900 472 0.04
901 766 0.07
902 613 0.06
903 449 0.04
904 9 0.00
905 94 0.01
906 138 0.01
907 22 0.00
908 65 0.01
909 84 0.01
910 148 0.01
911 8 0.00
912 27 0.00
913 95 0.01
914 5 0.00
915 6 0.00
916 11 0.00
917 5 0.00
919 10 0.00
920 18 0.00
921 10 0.00
922 11 0.00
924 5 0.00
925 2 0.00
926 96 0.01
927 583 0.05
928 521 0.05
929 31 0.00
931 4 0.00
932 5 0.00
934 2 0.00
935 2 0.00
937 3 0.00
938 69 0.01
939 75 0.01
940 3 0.00
941 31 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (876 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGGTAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGGCTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:11568357 original size:26 final size:26
Alignment explanation
Indices: 11568327--11568405 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
11568317 TGGGTGTTAG
11568327 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11568353 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11568379 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11568405 G
1 G
11568406 ATCGGACCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11570162 original size:26 final size:26
Alignment explanation
Indices: 11570132--11570210 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
11570122 TGGGTGTTAG
11570132 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11570158 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11570184 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11570210 G
1 G
11570211 ATCGGACCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11573264 original size:895 final size:898
Alignment explanation
Indices: 11571520--11573264 Score: 2434
Period size: 895 Copynumber: 1.9 Consensus size: 898
11571510 AACTCCTTCC
* *
11571520 GAAAAATAGAAAACGAGCCGTCTTGCCACGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATG
1 GAAAAATAGAAAACGAGCCATCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
11571585 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 AATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCGAC
* * * *
11571650 CACCCTATCGATCCACAGCTTGCGCATTCCGTCTCTCTGGCCGGCGTGGAGCCCGACCGCCCGCT
131 CACCCTATCGATCCACAGCTTGCGCATCCCGTCACTCT---CAGCGT-GAG-CCGACCGCCCGCC
* * *
11571715 CGCCCGCTTGTTTCATCGGTTGGCTTACGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGA
191 CGCCCGCTCGTTTCATCGGTTGGCTTACGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGA
** * * * * *
11571780 ACCAAGGGTTGCGGTAGTAGGATCAGCAACACGCAGAGGGGGACCCGATCAATCCCCGGCTTGTG
256 ACCAAGGGTTGCGACAGCAGGATCAGCAACACACAGAGAGGGACCCGATCAATCCCCAGCTTGCG
* * **
11571845 CATCCCGCCCCTCTGGCGGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATTG
321 CATCCCGCCCCTCTGGCGGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** * *
11571910 AGTTCATTCCCAATCTAAGCATACGGAGTTGATTCCCAGTCTAAGATCAAGCCAAACTGATGGTT
386 AGTTCATTCCCAATCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAGCCAAACTGAGGGTT
* * *
11571975 GTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCG
451 GTGGCAGCACATGCTGGGCTCGAGCATGTGCCGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
* **** * * *
11572040 CCGGAGCATTGTTGGGGAACCTAACTACCGGCATTGGGGTTCCGTCGATTGGGGGGCCGAGGGGT
516 CCGAAGCATCACCGGAGAACCTAACGACCGGCATTGGGGTTCCGTCGATCGGGGGGCCGAGGGGT
* *
11572105 GTGCAGACATGATGTGCGATGTGTGCTGGAACTTGGCCCTTATATTCGCCCCCTATCCCACATCA
581 GTGCACACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTCGCCCCCTATCCCACATCA
* * *
11572170 AACCTCAGGAACTTAGACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGATGCCAGTGGCCA
646 AACCTCAGGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGATGCCAGTAGCCA
* * *
11572235 TTAAAGTGTATGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
711 TTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTT
* *
11572300 TAGCTGACTATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
776 TAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAA
11572365 AACTCCTTCCAAAAAAATTTTAAAAAAATCACGAACTACAAAAAGTTTCAAAAATCGT
841 AACTCCTTCCAAAAAAATTTTAAAAAAATCACGAACTACAAAAAGTTTCAAAAATCGT
* *
11572423 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
1 GAAAAATAGAAAACGAGCCATCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
11572488 AGTTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCGAC
66 AATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCGAC
* * *
11572553 CACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCT-AGC-T-AG-TGTACTGCCCGCCCGCC
131 CACCCTATCGATCCACAGCTTGCGCATCCCGTCACTCTCAGCGTGAGCCG-ACCGCCCGCCCGCC
** * * * **
11572614 CGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTG
195 CGCTCGTTTCATCGGTTGGCTTACGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCA
* ** * * *
11572679 AGGGTTGTGACAGCAGGATTGGCAGCACACAGAGAGGGACCCGGTCGATCCCCAGCTTGCGCATC
260 AGGGTTGCGACAGCAGGATCAGCAACACACAGAGAGGGACCCGATCAATCCCCAGCTTGCGCATC
* * * *
11572744 CTGCCCCTCTGGCCGG-CTGAATGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGTATACGGAGT
325 CCGCCCCTCTGG-CGGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * ** *
11572808 TCATTCCCAGTCTAAGCATATAAAGTTCATTCCCAGTCTAAGATC-GGACTGGACCT-AGGGTTG
389 TCATTCCCAATCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAG-C-CAAACTGAGGGTTG
* * *
11572871 TGGCAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCTCATTTTTCTTCGCCGGGGCACCATCGT
452 TGGCAGCACATGCTGGGCTCGAGCATGTGCCGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGC
* *
11572936 CGAAGCATCACCGGAGAACCTGACCGA-CGGCATTGGGGTTTCGAT-GATCGGGGGGCCCG-GGG
517 CGAAGCATCACCGGAGAACCT-AACGACCGGCATTGGGGTTCCG-TCGATCGGGGGG-CCGAGGG
* * * *
11572998 GTGTGCACACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCAT
579 GTGTGCACACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTCGCCCCCTATCCCACAT
* *
11573063 CAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
644 CAAACCTCAG-GAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGATGCCAGTAG
* *
11573127 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACTCTTCAAGT
708 CCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGT
* *
11573192 TTTTAGCTGAA-ATTTTTTGTGCATGCCAACAAATATACAAGGATAATGTCTACCAAGTTTGGGG
773 TTTTAGCTGAATA-TTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGG
*
11573256 CTAAAACTC
837 CCAAAACTC
11573265 GTAATTTTAG
Statistics
Matches: 739, Mismatches: 94, Indels: 26
0.86 0.11 0.03
Matches are distributed among these distances:
894 4 0.01
895 561 0.76
896 15 0.02
898 1 0.00
899 2 0.00
903 156 0.21
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GAAAAATAGAAAACGAGCCATCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCGAC
CACCCTATCGATCCACAGCTTGCGCATCCCGTCACTCTCAGCGTGAGCCGACCGCCCGCCCGCCC
GCTCGTTTCATCGGTTGGCTTACGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAA
GGGTTGCGACAGCAGGATCAGCAACACACAGAGAGGGACCCGATCAATCCCCAGCTTGCGCATCC
CGCCCCTCTGGCGGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAATCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAGCCAAACTGAGGGTTGTGGC
AGCACATGCTGGGCTCGAGCATGTGCCGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAA
GCATCACCGGAGAACCTAACGACCGGCATTGGGGTTCCGTCGATCGGGGGGCCGAGGGGTGTGCA
CACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTCGCCCCCTATCCCACATCAAACCT
CAGGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAA
GTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTTTAGCT
GAATATTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCAAAAAAATTTTAAAAAAATCACGAACTACAAAAAGTTTCAAAAATCGT
Found at i:11574895 original size:26 final size:26
Alignment explanation
Indices: 11574866--11574915 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11574856 CCGGTCCGAT
*
11574866 CTTAGACTAGGAGTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
11574892 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
11574916 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11575744 original size:26 final size:26
Alignment explanation
Indices: 11575706--11575757 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11575696 CGGTCTGATT
*
11575706 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGAGAATGAACTCCATATGC
*
11575732 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCATATGC
11575758 CAAAGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCATATGC
Found at i:11576271 original size:835 final size:834
Alignment explanation
Indices: 11574528--11586017 Score: 5324
Period size: 835 Copynumber: 13.0 Consensus size: 834
11574518 CTAAAACCTC
* * * * *
11574528 GAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTAT
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGACTAC
* * * * *
11574593 TGGTAGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAA
66 TAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
11574658 GGATA-GGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCGCAC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC-CCC
* * * **
11574722 -GACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCAATGCTCCGGTGATG
195 GGA-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATG
* * * *
11574786 AG-GCCCTGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACC
259 -GTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-C
* * *
11574850 CTCGGTCCGGTCCGATCTTAGACTAGGAGTGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
322 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* *
11574915 AAGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTC-AGCAGGCCAGAGGGGTGGGATGCGC
387 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAGC-GGCCAGAGGGGTGGGATGCGC
* * * *
11574979 AAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTACTG-CTGCAACCCTCGATCC
451 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTC-GCAACCCTCGGTCT
* * *
11575043 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGGCGGG
515 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
** * * *
11575108 CAGGGGGGCACTACGCCAACCAGAGAGACGGGATGCGTAAGCCGTGGATCGGTAGGGTGGTAGGC
580 C----GGGCACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
11575173 GGGTTTAGGCACATCTTCTTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
641 GGGTTTAGGCACATCTTCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
** * * * * * *
11575238 ATGGTCTGTTAAGGCTTCACGTGAAGGTTCATGGGAAGACAACTCATTTTTTATTTTTCACGATT
706 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * **
11575303 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATCCTTGTATTATTTCA
771 TTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATCCTTGTATTATTTTG
11575367 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGACTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGACTAC
11575432 TAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
66 TAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
11575497 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCG
* * * *
11575562 GACCCCCCGATCACCGGAACCCTAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGACGATGGT
196 GACCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATGGT
* ** ** * * * *
11575627 GCCCGGGGGAAGAAAAATGCGACACTAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACTCTC
261 GCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAAC-CTC
* * * *
11575692 GGTTCGGTCTGATTTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGAACTCCGTATG
325 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
11575757 CCAAAGTCAATCCACGAAATGAGCGTGTGGGCGCCCAATCGGCCAAAGCGGG-GGGATGTGCAAG
390 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAGCGGCCAGAG-GGGTGGGATGCGCAAG
* * * * * *
11575821 CTGGGGATCGACCGAGTCCCACTCTGCGTGCTGCCGATCTTGCTGTCGCAACCCTCGGTCTGATC
454 CCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGATC
* * * *
11575886 TGATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAATGAGCGGGTGGGTGGG
519 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * *
11575951 CACAACGCCGGCCAGAGAGACGAGATACGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAG
584 CACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
11576016 GCACATCTTCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCG
649 GCACATCTTCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
11576081 TTAAGGCTTCACGTGAAGTTTCATGGGAAGATGACTCGTTTTCTATTTTTCACAATTTTCAAAAC
714 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
11576146 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATCCTTGTATTATTTTG
779 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATCCTTGTATTATTTTG
11576202 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGACTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGACTAC
11576267 TAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
66 TAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
11576332 GGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCACACATCATGTGTGCAAACCCCCG
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCG
* * ** * * *
11576397 GCCCCCCCGATCGCTGGAACCCCAATGCCCCCGATCAGGTTCTCTGCCGATGCTCCGACTATGGT
196 GACCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATGGT
* *
11576462 GCCCCGACGAAGAAAAATATGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGTAACCTTC
261 GCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACC-TC
* * * * *
11576527 GGTCCGGTCTGATCTTAAACTGGAAATGAACTCTGTATGCTTAGACTGGGAAAGAACTTCGTATG
325 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
11576592 CCTAAGTCAACCCACAAAACGAGCGTGCGGGC-ATTGAGTCGGCCAGAGGGGTGAGATGCGTAAG
390 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAG-CGGCCAGAGGGGTGGGATGCGCAAG
* * *
11576656 CCGGGGATCAACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGATC
454 CCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGATC
* ** *
11576721 TGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACCGATAAAACGAGCGGACGGGCGGG
519 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * *
11576786 CACTATGCCGCCCAGAGATACGGGATGGGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAG
584 CACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
**
11576851 GCACATCTT-TATATTTCTGCGTGCCAAT-CCATTTTTATGGCTTGTAAATTGTTACAATGGTCC
649 GCACATCTTCT-TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
11576914 CTTAAAGCCTTCACGTG-AGTTTCATGGCAAGA--AC-CATTTTCTCA-TTTTCACGATTTT-GA
713 CTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCACGATTTTCGA
* ** * * ** **** **
11576973 AAGTTTTAAAACGGTTCAAGAGTTTTTAAAA-TTTTTCGGCAAGGATTTTTGCCCCAAACTTG
776 AACTTTT--TGCGGTTCGAGATTTTTTAAAATTTTTTCGG-AAGGATCCTTG-TATTATTTTG
* * ** * *** * ** * *
11577035 GTAGACCATGATCCCTTGTATTTTGTCG-GCA--TGCACAAAAAAAAT--TCAGCTGA-AAACTT
1 G-A-A--GTG-T-ACAAG-ATTTTGT-GACCATTTG-A-AAAAAGTGTCCCCATTTCAGACACTT
* ** * * * ** * * * ** * *
11577094 TAAAGTGTACAAGATTTTGTGGATTCGTTTCAAAAAAGGTGTCCCTATTTTCAGACACTTTATGG
56 TAACGACTACTAG----T-AGCAAACCTGT---AAAA----TCTC-A-AAT--G-CTCTTTA-AG
* ** * * * * * * * *
11577159 GCTACTGGCAGAAAAACCTGTAAAATCTCAAATGCTCTTTA-GAGGG-GAGTGTG--AGTTTTCA
103 G-----GG--G-------TGTGAGTTCTC-GA-GGT-TTGATGAGGGATAGGGGGCCA-ATAT-A
** * ** ** * * * *
11577220 AGGTTTTGATGAGGGATA-GGGGGCCAAT-ATA-AGGCCTAAGTGCCAGCACCCATCGCACATCA
149 AGG----G-CCA-AG-TACCAGCACCCATCACACA--TC-ATGTGC--GCA--CA-C-C-C--C-
* * * * *
11577282 TGTGCGCACACCCCCCTGGCACCTCGATCGTAGGATCCCCAATGCTGTTGGTCAGGTTCTCTGAC
194 ----CG--GACCCCCC--G-A--TCG--C--CGGAACCCCAATGCCGTCGGTCAGGTTCTCTGAC
* * *
11577347 GATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACCTGCCCGAGCCCAGCAT
244 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCAT
** ** * *
11577412 GTGCTGCCGTAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTTCATATGCTTAGACTG
309 GTGCTGCCGTAA-CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
11577477 GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTGAGGGCGCTC-AGCTGGCTAAA
373 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAGC-GGCCAGA
** * * * * * **
11577541 GGGGCT-GGATGCATAAGCCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTATCGATGCTGTTCCC
437 GGGG-TGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTC
* * *
11577605 GTAACCTTCAGTCTGGTCCTACTATCGGAACCCTCGATCCGGTTTGACTTTAGACTGGAATGAAC
501 GCAACC--C--TC-GG---T-C--T--G-A-TCT-GAT-C--TTAGAC--T-G---GGAATGAAC
* * * * * * **
11577670 TCTGTATGCCTTAGACAACCAATGAAACGAGCGGGTAGGCGGGCGGGCACTACGTCATCCAGAGA
541 TCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGCGGGCACTACGCCGCCCAGAGA
* * * *
11577735 GACAGGATGCGCAAGCCATGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
602 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCT
* * *
11577800 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACTATGGTTCCTTAAGCCTTCACGTGAAG
667 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
11577865 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGAGATT
732 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATT
*
11577930 TTTTAAAATTTTTTCAGAAGGATCCTTGTATTATTTTG
797 TTTTAAAATTTTTTCGGAAGGATCCTTGTATTATTTTG
* *
11577968 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAACGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGACTAC
11578033 TAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
66 TAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
11578098 GGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCACACATCATGTGTGCAAACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC--ACACCCC
* * ** * * *
11578163 CGGCCCCCCCGATCGCTGGAACCCCAATGCCCCCGATCAGGTTCTCTGCCGATGCTCCGACTATG
194 CGGACCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATG
* *
11578228 GTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGTAACCT
259 GTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACC-
* * * * * *
11578293 TCGGTCCGGTCTGATCTTAAACTAGAAATGAACTCTGTATGCTTAGACTGGGAAAGAACTCTGTA
323 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
** * * *
11578358 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAACCGGCCAGAGGGGTGAGATGCGCAA
388 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAGCGGCCAGAGGGGTGGGATGCGCAA
11578423 GCCGGGGATCGATCGGGT--CCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGAT
453 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGAT
* * * *
11578486 CCGATCTTAGACTAGGAATGAACTCCGTATGGCTAAGCCAACCGACGAAACGAGCGGACGGGCGG
518 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* *
11578551 GCACTACGCCGCCCAGAGATACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTA
583 GCACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
**
11578616 GGCACATCTT-TATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTGTTACAATGGTC
648 GGCACATCTTCT-TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
11578680 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAA
712 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAA
* * * ** **** **
11578745 AGTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTG
777 ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATCCTT-G-TATTATTTTG
* **
11578805 GAAGACATGATCCTTGTATTTTTGTCGGCATGCACAAAAAAAATTCAGCTGAAAACTTAAAGTGT
1 GAAG---TG-TACAAG-A-TTTTGT--G-A--C-C-------ATT----TG-AAA---AAAGTGT
*** ** * * ** * * *
11578870 ACAAGATTTTGTGATC-GTTTCAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAG
39 -CCCCA-TTTCAGA-CACTTT----AACGACT-ACTA-GT-AG-CA----AA---C--CT-G--T
* * * * * * * * ** * * *
11578934 AAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTGAGTTTTCAAGGTT--TGATGAGG-G
81 AAAA--TCTCAAAT-GC---T-CT-TTAAGGGGGTGTGAG-TTCTCGAGGTTTGATGA-G-GGAT
* * * * * *
11578995 ATAGGGGGCCA-ATATAAGGCCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCT
135 A-GGGGGCCAATATA-AGGGCC-AAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCC-
* ** * *
11579059 GG-CACCCCGATCGTAGGATCCCCAATGCTG-CTGGTCAGGTTCTCTGACGATGCT-CGACGATG
195 GGACCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCTGACGATGCTCCGACGATG
* * * * *
11579121 GTGCCCCGATGAAGAAAAATACGGCACCAGCACCTGCCCGAGCCCAGCATGTGCTGCTGCAACCC
259 GTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CC
* * * * * * *
11579186 TCGATCCAGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGAAATGAACTCCATA
323 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * *
11579251 TGCCTAAGTCAACCCATGAAACGAGTGTGAGGGCGC-CCAGCTGGCTAAAGGGGCT-GGATGCAC
388 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAGC-GGCCAGAGGGG-TGGGATGCGC
* *
11579314 AAGCCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTATCGATGCTGTTCCCGTAACCTTCAGTCTG
451 AAGCCGGGGATCGATCGGGT-CCCC-CT-C-TG----CG-TGCTG-T--CG--A---TC---CT-
* * * * *
11579379 GTCCTACTATCGCAACCCTCGGTCTGGT-TCGACCTTAGACT-GGAATGAACTCTGTATGCCTTA
495 G-----CTGTCGCAACCCTCGGTCTGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* ** * * * **
11579442 GACAACTAATGAAACGAGTGGGTAGGCGGGCGGGCACTACGTCATCCAGAGAGACGGGATGCGCA
554 GCCAACCGACGAAACGA--GCG--GGCGGGCGGGCACTACGCCGCCCAGAGAGACGGGATGCGCA
* * * *
11579507 AGCCATGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
615 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCGTGCCAATGCC
*
11579572 ATTTTTATGGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
680 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
11579637 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTGTTAAAATTTTT
745 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * **** **
11579702 TCAGAAGGAT-TTTAGGCCCCAAACTTG
810 TCGGAAGGATCCTT--G-TATTATTTTG
* * ** * *** * ** * * *
11579729 GTAGACATGATTCTTGTATTTTTGTTG-GCATGCACAAAAAAAT-T---CAGCT-AAAAAC-TAA
1 G-A-A-GTG-TACAAG-A-TTTTG-TGACCAT-TTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* ** * * ** * * ** *
11579787 AAGTGTACAAGATTTTG-TGACCATTTCAAAAAAGTGTCCCCCATTTGAGACACTTTAATGGCTA
58 ACGACTACTAG---TAGCAAACC-TGT---AAAA---T--CTCAAAT--G-CTCTTTAA-GG---
* ** * * * * * **
11579851 CTGGCCGCAAACCTGTAAAATATCAAATGCTCTTTAATG-GGGTGTGAGTTCGTGAGGTTTAATG
104 --GG--G------TGTGAGTTCTC-GA-G--GTTTGATGAGGG-AT-AG---G-G-GG-CCAAT-
* * * * * *
11579915 AGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCGCACACCCC
146 A---TAA--GGGCCAA-GT-A---CC-AGCACC--CATC-A-CACA-T-CATGTGCGCACACCCC
* * * * * ** *
11579980 CCGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATACTCCGACGATG
194 CGGACCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATG
* * * * ** * * * * *
11580045 GAGCCCTGGCAAAGGGAAATACGGCACCAGCAAATGCTCGAGCCCAGCAAGTGCTGCCGCAACCC
259 GTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CC
* * * *
11580110 TTGGTCCGGTCCGATCTTAGACTGGGAATGATCTCTGTATGCTTAGACTGGGAATGAACTCCGTA
323 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * *
11580175 TGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTC-AGCCAGCCAGAGGGGCGAGATGCGTA
388 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAG-CGGCCAGAGGGGTGGGATGCGCA
* *** * * * *
11580239 AGCCGGGGATCGATCGGGTCCCCATCTGTAAGCTGTCGATCCTACTATCGCAACCCTTGGTCTGG
452 AGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGA
*
11580304 T-TAGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
517 TCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-
* * * *
11580368 AAGCGGGCGAGCACTACACCGGCCAGTGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
579 --GC--G-G-GCACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
11580433 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATTGCTTGTAAATTGAT
638 GGTGGGTTTAGGCACATCTTCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
11580498 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
703 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * ***
11580563 ATTTTTGAAACTTTTTGTGGTTCTG-GATTTTTTAAAATTTTTTCGGAAAGAGT-TTTGGCTCCA
768 ATTTTCGAAACTTTTTGCGGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGA-TCCTT-G-TATT
**
11580626 AACTTG
829 ATTTTG
* * ** * *** * ** **
11580632 GCAGACATGATCCTTGTATCTTTGTTG-GCATGCACAAAAAAAT-TCAGCTAAAAAGTCGAAGTG
1 G-A-A-GTG-TACAAG-AT-TTTG-TGACCAT-TTGAAAAAAGTGTC--C--CCATTTC--A--G
* *** * * * ** * ** ***
11580695 TACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAAACA-CTTTAATGTCTACTGGC
50 -AC-A-CTTTAACGACTACTAGTAGCAAA------CC-TGT-AAA-ATCTCAAATG-CT-CTTTA
**** * * ** * * * * * * ** **
11580758 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
101 AG--GGGGTGTGAGTTCTC-GA-GGT-TTGATGAGGG-AT-AG-----G-GG---G-CCA-ATAT
* * * * * *
11580823 AGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCATACCCCCCGGCC
148 AAGGG-CCAA-GT-A---CC-AGCACC--CA-TCA---CACATCATGTGCGCACA-CCCCCGGAC
** * ** *
11580888 CCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGAGCC
199 CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCC
* * * ** * * * * * *
11580953 CTGGCAAAGGGAAATACGGCACCAGCAAATGCTCGAGCCCAGCAAGTGCTGCCGCAACCCTTGGT
264 CCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CCTCGGT
* * *
11581018 CCGGTCCGATCTTAGACTGGGAATGATCTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
328 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *** *
11581083 AAGTCAACCCACGAAACGAGCGTACGGGCGCTC-CGCAGGCCATAGGCACGGGATG-GTCAAACC
393 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAGC-GGCCAGAGGGGTGGGATGCG-CAAGCC
* * * * * * *
11581146 GGGGATCGGTTGGGTCCCCCTCTACGTGCTGTTGATCCTGCTGCCGCAACCCTTGGTCTGGT-TG
456 GGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGATCTG
* * ** *
11581210 AATCTTAGACTGGGAATGAACTCAGTATACAC-AAGCCAACCGACGAAACGAGCGGGCAAGCAGG
521 -ATCTTAGACTGGGAATGAACTCCGTATGC-CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* *
11581274 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
584 CACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
11581339 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCT
649 GCACATCTTCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * **
11581404 TTCAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCACAATTTTTAAAAC
714 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
* * ** **
11581468 TTTTTGCGGTTC-AGGATTTTTTAAAATTTCTTCGGAAGGAGT-TTTGGCCTTAAACTTG
779 TTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGA-TCCTT-GTATT-ATTTTG
* * ** * *
11581526 GTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACTAAAAGTGTA
1 G-A-A-GTG-TACAAG-A----TTTT-G--TG-AC-----CATT----T--GAA--AAAAGTGT-
*** ** * ** * * ** * * *
11581591 CAAGATTTTGTGACGA-TTTGAAAAAAGTGTCCCCA-TTTCAAACACTTTAATGGCTATTGGTAG
39 CCCCA-TTTCAGAC-ACTTT----AACGACT-ACTAGTAGCAAAC-CTGTAA-----AAT-CT--
* ** * *** * * ** * * *
11581654 CAAACCAGCAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTTGAGGTTTGATGAGGGATAG
88 CAAA--TGC----TCTTTAAGGGGGTGTGA-GTTCT-CGAGGT-TTGA----TGA-G-GGA-TAG
* * * *
11581719 GGGGCCAATATAAGGGCCACGTACCAGCACCCATCGCACATCATCTGTGCACACCCACCCGG-CC
137 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CC-CCCGGACC
* * * * ** * *
11581783 CACTGATCGCCGGAACCCCAAT-CCGTCGATCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCC
200 CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCC
** ** * * * * ** * *
11581847 CGGTGAAGAAAAATGCGACACCAACAAATG-CCTAGCCCAGCATGTGCTGGTGCAACCCTTGGTC
265 CGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CCTCGGTC
* * *
11581911 CGATCCGATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
329 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * ** * * *
11581976 AGTCAACCCACGAAACGAGTGTGCGGGTGCTC-AGCCAGCCAGAGGGACGAGATGCGTAAGCCGA
394 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAG-CGGCCAGAGGGGTGGGATGCGCAAGCCGG
* * *** * * * *
11582040 GGATCGGTCGGGTCCCCATCTGTAAGCTGTCGATCCTGCTATCGCAACCCTTGGTCCGGT-TAGA
458 GGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGATCT-GA
*
11582104 TCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAAGCGG
522 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG---GC--
* * * *
11582169 GCGAGCACTACACCGGCCAGTGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
581 G-G-GCACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
11582234 TTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
644 TTTAGGCACATCTTCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
11582299 GTCCCTTAAGCGTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
709 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * * * **** **
11582364 GAAACGTTTTACGGTTTGGGATTTTTTAAAATTTTTT-GGAAGGAGT-TTTGGCCCCAAACTTG
774 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA-TCCTT-G-TATTATTTTG
* *
11582426 GTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCTGCTAAAAACTCAAAGTGTA
1 G-A-A-GTG-TACAAG-A-TTTTG-T-G-A--C-C------ATT-TG----AAA---AAAGTGT-
*** ** * * ** ** *
11582491 CAAGATTTTGTGAC-CATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
39 CCCCA-TTTCAGACAC-TTT-----AA-CGACTAC-TAGTAG-CA----AA---C--CT-GTA--
* * * * * * *
11582555 AAACCAGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAG
82 AAATC-TC-AAAT-GC---T-CT-TTAAGGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
11582620 GGG-CAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCGCGCACCCCCTCCGG-CC
138 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT--GCGCACACCC-CCGGACC
* * *
11582683 CCCCGATCGCTGGAACCCCAATGTCGCCGGTCAGGTTCTC---CG--G---C-A--ATGGTGCCC
200 CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCC
* ** * * * * **
11582737 TGGTGAAGAAAAATACGGCACCACCACATGCCTGAGTCCAGCATGTGCTTTC-TCAACCCTCGGT
265 CGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT-AA-CCTCGGT
* * * *
11582801 CCTGTCCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCT
328 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
11582866 AAGTCAACCCATGAAACAAGCGTGCGGGCGCTC-AGCCGGCCAGAGGGGTGGGATGCGCAAGTCG
393 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAG-CGGCCAGAGGGGTGGGATGCGCAAGCCG
* * * * * * * * **
11582930 GGGATC-AGTCGGGTCCCGCTCTGCGTGCTGTCGATCCTCCAGCCGCAACACTCAGTCCGGTCCA
457 GGGATCGA-TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGATCTG
* *
11582994 ATCTTAGACTGGGAATGAACTCCGTATGCCTTAG-CAACCGATGAAACGAACGGGCGGGCGAGTG
521 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---GCGGGC--G-G
* * *
11583058 AGCGTGCACTGCGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGG
579 -GCGGGCACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
11583123 GTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAAT
643 GTTTAGGCACATCTTCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
11583188 GGTCCCTTAAGCCTTCACGTCACGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
708 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * * ** **** **
11583253 TGAAACTTTTTCCAGTTTGAGATTTTTTTAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTG
773 CGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATCCTT-G-TATTATTTTG
* ** * ** * ** **
11583317 GTAGACGTGATCCTTGTATTTTTGTTG-GCATTCAAAAAAAAAAT-TCAGCTAAAAACTCGAAGT
1 G-A-A-GTG-TACAAG-A-TTTTG-TGACCATT--TGAAAAAAGTGTC--C--CCATTTC--A--
* *** * * * ** * * * **
11583380 GTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACA-CTCTAATTGCTACTGG
49 G-AC-A-CTTTAACGACTACTAGTAGCAAA------CC-TGT-A-AAATCTC-AAATGCT-CTTT
* **** * ** ** * * * * **
11583443 CAGCAAACCTGTAAAATCTTAAATGCTCTTTAAG-GGGGT-GCGAGTTCTCAAGGTTTGATGAGG
100 AAG--GGGGTGTGAGTTC-TCGA-GGT-TTGATGAGGGATAG-G-GGGC-CAA----T-AT----
** ** * * * **** * *
11583506 GAGAAGGGGCCAA-TATAAGGGCCAAGT-ACCAGCACCCAT-TGTAG-ATCATGTGCGTACACCC
148 ---AA-GGGCCAAGTACCAGCACCCA-TCA-CA-CA-TCATGTG-CGCA-CACCCCCGGACCCCC
** * ** * * * * * *
11583567 C--T--CCGGCCCCCCGAT--CGTCGAAACCCCA-ATGCCACCGATCAAGTTCTCCGACGATGGT
203 CGATCGCCGGAACCCCAATGCCGTCG----GTCAGGT-TCTCTGA-CGA-TGCTCCGACGATGGT
* * * * * *
11583625 GCCTC-AGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATCTGCTACCGCAACCCT
261 GCCCCGA-CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CCT
* * * * * * *
11583689 CGATCCAGTCCGATCTTAGAATGGGAATGAACTTCGTATGCTTATACTGGGAATGAACTCCATAT
324 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* ** * *
11583754 GCCTAAGTCAACCCATGAAACGAGAATGCGGGCGCTC-AGCCGGCCAGAGGGGAGGGATGCACAA
389 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAG-CGGCCAGAGGGGTGGGATGCGCAA
** * * * * * *
11583818 GCCGGGGATCGGCCGGGTCCCCCCCTGCATGCTGCCGATCCTGCTATCGCAACCCTCTAG-CTGG
453 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTC-GGTCTGA
* * * * *
11583882 TCTAATCTTAGACTGGGAATGGACTCCGTATACCTAAGCCAACCGATGAAACGAGCGGTTGGTGG
517 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-G--GGCGG
* ** ** * * *
11583947 GCGAGCGAGCACTACGCCGACCAGAGAGACAAGATTTGCAAGCCGTGGATCAAAAGGGTGGAAGG
579 GC--G-G-GCACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
11584012 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAAACTCATAC
640 TGGGTTTAGGCACATCTTCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
11584077 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGAT
705 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * * **
11584142 TTTTGAAACTTTTTACGATTC-AGGATTTTTTTAAATTTTTTTGGAAGGAGT-TTTAG-ACCCAA
770 TTTCGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGA-TCCTT-GTA--TTA
***
11584204 ACCTG
830 TTTTG
* * ** *
11584209 GTAGACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAAATCGAAGTGTA
1 G-A-A-GTG-TACAAG-A-TTTTG-T-G-A--C-C------ATT----T-GAAAA---AAGTGT-
* * * * * ** * * * *
11584274 CACAATTT-TGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
39 CCCCATTTCAGACA-C-TTT----AACGACT-ACTA-GT-AG-CA----AA---C--CT-GTA--
* * * * * * * ** * *
11584338 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTGAGT-TCTTGAGGTT--TGATGAGG-G
82 AAA--TCTCAAAT-GC---T-CT-TTAAGGGGGTGTGAG-TTCTCGAG-GTTTGATGA-G-GGAT
* * * * * * ** *
11584398 ATAGGGGGCTA-ATATAAGGGCCA--AGTACCAGCACC--CATCACACATCATGTGCGCACACCC
135 A-GGGGGCCAATATA-AGGGCCAAGTACCAGCA-C-CCATCA---CACATCATGTGCGCACA---
**
11584458 CCCCTCGG-CCCACCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT-TCGACGATGCTCC
190 CCCC-CGGACCC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCT-GACGATGCTCC
* * * * * * *
11584521 GGCAATGGTGCCCAGACGAAGAAAAATGTGGCACCACCACATGCCCGGGCCCAACATGTGCTGCC
252 GACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * * *
11584586 ATAACCCACGGTCTGATCCGATCTCAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
317 GTAA-CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * ***
11584651 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAATCGGCCAGAAGGGCAAGA
381 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAGCGGCCAGAGGGGTGGGA
* * * * * *
11584716 TGCGCAAGCCAGGGAACG-GCTGGGTCCCCCTCTGCGTGCTG-CTGATCCTACTGCCACAACCCT
446 TGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGTCGCAACCCT
* *
11584779 CGGTCTGGTCTGATCTTAG-CTTGGGAATGAACTCCGTATTCCTAAGCCAACCGACGAAACGAGC
509 CGGTCTGATCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--A--
* * * *
11584843 AGGGGGGCGAGCGGGCGGGCGGGCACTGCGTCGGCCAGAGAGAC-GGATGCGCAAGTCGTGGATC
567 A------CGAGCGGGCGGGCGGGCACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
11584907 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATCA-TTCTACGTGCCAATGCCATTTTTATGG
626 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTC-TTATTTCTGCGTGCCAATGCCATTTTTATGG
** *
11584971 C-TGTCAAATTCATACAAACAGTCCCTTAAAGCCTTCACGTGAAGTTTCATGTGCACAGATGACT
690 CTTGT-AAATTCATAC-AATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATG-GCA-AGACGACT
* ** * * *
11585035 CTGTATTTCTATTTTTCAGCAATTTTC-AAAAGTTTTACGGTTCTGGGATTTTTTTAAATTTTTT
750 C-GT-TTTCTATTTTTCA-CGATTTTCGAAACTTTTTGCGGTTC-GAGATTTTTTAAAATTTTTT
*
11585099 CAGAAGGAGTTTTGGCCCCAAAACTTGGTAGACGTGGTCTTGTATTTTTG
811 CGGAAGGA----T-----C----CTT-GT--A--------T-TA-TTTTG
* * * ** * ** *** **
11585149 GTAAGCATCGCACCAAAAAAGTCAGCTAAAACTCGAAGTGTACAAATTTTGTGGACCATTTTGAA
1 G-AAG--T-GTA-C--AAGATTTTG-T--GAC-C-ATTTG-A-AAAAAGTGT-CCCCA-TTT---
* * * * *
11585214 AAAAGTGTCCCCATTTTAGAC-ACT-TTAATGGTCTCGGCAGCAAACCTATAAAATCTCAAATGC
47 --CA--G---ACACTTTA-ACGACTACT-A--G--T----AGCAAACCTGTAAAATCTCAAATG-
11585277 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
94 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
11585342 ACCAGCACCCATCACACATCATGTGCGCACACCCCTCTCGGCCCCCCCGATCGACGAAACCCCAA
159 ACCAGCACCCATCACACATCATGTGCGCACA-CCC-C-CGGACCCCCCGATCGCCGGAACCCCAA
* ** * * * **
11585407 TACCGTCGGTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCTGGCAAAGAAAAATGCGGCAC
221 TGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCAC
* * * * *
11585472 CAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAATCCTCGGTTCGGTCTGATCTTAGATTGGAA
286 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CCTCGGTCCGGTCTGATCTTAGACTGGGA
* * * * *
11585537 ATGAACTTCATATGCTTAGACTGGGAATGAACTCCATACGCCTAAGTCAACCCATGAAACGAGCG
350 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
11585602 TGCGGGCACTC-AGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCT
415 TGCGGGCGCTCAAG-CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCT
* ** * * * * * * *
11585666 GTGTGCTACCGATCCTGGTGCCACAACCCTTGGTCCGGTCCTGATCTTAGACTAGGAATGAACTC
479 GCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGAT-CTGATCTTAGACTGGGAATGAACTC
* * *
11585731 CGTATGCCTAAGCCAATCGACGAAACGAGCGAGCGGGTGGGCGAGCGGGCACTACGCCGGCCAGA
543 CGTATGCCTAAGCCAACCGACG-AA--A-CGAGC----GGGCGGGCGGGCACTACGCCGCCCAGA
* * * *
11585796 GAGACGGGATGCACAACCCATGGATCGATAGGGTGGTAGTAGGTGGGTTTAGGCACATCTTCATA
600 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGT-G--GTAGGTGGGTTTAGGCACATCTTCTTA
* *
11585861 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
662 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * * *
11585926 TGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTACGGTTTG
727 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCG
11585991 AGATTTTTTAAAATTTTTTCGGAAGGA
792 AGATTTTTTAAAATTTTTTCGGAAGGA
11586018 GTTTTGGCCC
Statistics
Matches: 8329, Mismatches: 1529, Indels: 1514
0.73 0.13 0.13
Matches are distributed among these distances:
830 7 0.00
831 27 0.00
832 30 0.00
833 5 0.00
834 56 0.01
835 1062 0.13
836 1 0.00
837 25 0.00
838 9 0.00
839 485 0.06
840 79 0.01
841 5 0.00
842 6 0.00
843 7 0.00
845 10 0.00
846 1 0.00
847 1 0.00
848 4 0.00
849 5 0.00
850 2 0.00
851 2 0.00
853 2 0.00
854 6 0.00
855 3 0.00
856 4 0.00
859 2 0.00
860 6 0.00
861 3 0.00
862 3 0.00
863 9 0.00
864 38 0.00
865 12 0.00
866 227 0.03
867 6 0.00
868 8 0.00
869 13 0.00
870 18 0.00
871 13 0.00
872 8 0.00
873 10 0.00
874 7 0.00
875 19 0.00
876 10 0.00
877 17 0.00
878 4 0.00
879 13 0.00
880 14 0.00
881 22 0.00
882 13 0.00
883 12 0.00
884 3 0.00
885 4 0.00
886 7 0.00
887 4 0.00
888 10 0.00
889 12 0.00
890 267 0.03
891 273 0.03
892 758 0.09
893 281 0.03
894 208 0.02
895 215 0.03
896 26 0.00
897 30 0.00
898 45 0.01
899 84 0.01
900 272 0.03
901 94 0.01
902 330 0.04
903 643 0.08
904 43 0.01
905 273 0.03
906 20 0.00
907 39 0.00
908 19 0.00
909 105 0.01
910 50 0.01
911 76 0.01
912 53 0.01
913 43 0.01
914 56 0.01
915 74 0.01
916 74 0.01
917 298 0.04
918 141 0.02
919 40 0.00
920 58 0.01
921 52 0.01
922 13 0.00
923 55 0.01
924 462 0.06
925 6 0.00
926 19 0.00
927 38 0.00
928 14 0.00
929 26 0.00
930 2 0.00
931 107 0.01
932 51 0.01
933 6 0.00
934 35 0.00
935 27 0.00
936 8 0.00
937 1 0.00
938 7 0.00
939 7 0.00
940 7 0.00
941 6 0.00
942 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (834 bp):
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGACTAC
TAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCG
GACCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATGGT
GCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCTCG
GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAGCGGCCAGAGGGGTGGGATGCGCAAGCC
GGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGATCTG
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
CTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCTTATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTT
TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATCCTTGTATTATTTTG
Found at i:11576569 original size:26 final size:26
Alignment explanation
Indices: 11576540--11576592 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
11576530 CCGGTCTGAT
11576540 CTTAAACT-GGAAATGAAC-TCTGTATG
1 CTTAAACTGGGAAA-GAACTTC-GTATG
*
11576566 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAAACTGGGAAAGAACTTCGTATG
11576592 C
1 C
11576593 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAAAGAACTTCGTATG
Found at i:11577478 original size:26 final size:26
Alignment explanation
Indices: 11577442--11577494 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11577432 TTGGTCCAAT
*
11577442 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11577468 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11577494 C
1 C
11577495 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11578337 original size:26 final size:26
Alignment explanation
Indices: 11578308--11578360 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11578298 CCGGTCTGAT
11578308 CTTAAACT-AGAAATGAACTCTGTATG
1 CTTAAACTGAGAAA-GAACTCTGTATG
* *
11578334 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAAACTGAGAAAGAACTCTGTATG
11578360 C
1 C
11578361 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACTGAGAAAGAACTCTGTATG
Found at i:11579241 original size:26 final size:26
Alignment explanation
Indices: 11579201--11579253 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11579191 CCAGTCCGAT
* *
11579201 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGAAATGAACTCCATATG
11579227 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
11579253 C
1 C
11579254 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:11580161 original size:26 final size:26
Alignment explanation
Indices: 11580125--11580177 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11580115 CCGGTCCGAT
* *
11580125 CTTAGACTGGGAATGATCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11580151 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11580177 C
1 C
11580178 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11580712 original size:903 final size:903
Alignment explanation
Indices: 11577968--11586041 Score: 10094
Period size: 892 Copynumber: 8.9 Consensus size: 903
11577958 TATTATTTTG
* *
11577968 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAACGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
11578033 TAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
11578098 GGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCACACATCATGTGTGCAAACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCC
** * * ** *
11578163 CGGCCCCCCCGATCG-CTGGAACCCCAATGCCCCCGATCAGGTTCTCTGCCGATGCTCCGACTAT
195 CGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGAT
* * * * * *
11578227 GGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGTAACC
259 GGTGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * * * *
11578292 TTCGGTCCGGTCTGATCTTAAACTAGAAATGAACTCTGTATGCTTAGACTGGGAAAGAACTCTGT
324 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGT
** * * *
11578357 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAACCGGCCAGAGGGGTGAGATGCGCA
389 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCA
** * * *
11578422 AGCCGGGGATCGATCGGGT--CCCTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGA
454 AGCCGGGGATCGATCGGGTCCCCCTCTGTATGCTGTCGATCCTGCTATCGCAACCCTTGGTCTGG
** * *
11578485 TCCGATCTTAGACTAGGAATGAACTCCGTATGGCTAAGCCAACCGACGAAACGA----GC-GG--
519 TTAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCA
* * *
11578543 A-CGGGCGGGCACTACGCCGCCCAGAGATACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAG
584 AGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * **
11578607 GTGGGTTTAGGCACATCTTTATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTGTTA
649 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
11578672 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGA
714 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* ** *
11578737 TTTTTGAAAGTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAAC
779 TTTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
11578802 TTGGAAGACATGATCCTTGTATTTTTGTCGGCATGCACAAAAAAAATTCAGCTGAAAACTT
844 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTC
* * * * *
11578863 AAAGTGTACAAGATTTTGTGATCGTTTCAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
11578928 TGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
11578993 GGATAGGGGGCCAATATAAGGCCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
* * * * * **
11579058 TGG-CACCCCGATCGTAGGATCCCCAATGCTG-CTGGTCAGGTTCTCTGACGATGCT-CGACGAT
196 -GGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGTGATGCTCCGACGAT
* ** * *
11579120 GGTGCCCCGATGAAGAAAAATACGGCACCAGCACCTGCCCGAGCCCAGCATGTGCTGCTGCAACC
259 GGTGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * *
11579185 CTCGATCCAGTCCGATCTTAGACTGGGAATGAACT-TCATATGCTTAGACTGGAAATGAACTCCA
324 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCG
* * * * * * * *
11579249 TATGCCTAAGTCAACCCATGAAACGAGTGTGAGGGCGCCCAGCTGGCTAAAGGGGCTG-GATGCA
388 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GAGATGCG
* *
11579313 CAAGCCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTATCGATGCTGTTCCCGTAACCTTCAGTCT
452 CAAGCCGGGGATCGATCGGGT-CCCC-CT-C-TG---T--ATGCTG-T--CG--A---TC---CT
* * * * *
11579378 GGTCCTACTATCGCAACCCTCGGTCTGGTTCGACCTTAGACT-GGAATGAACTCTGTATGCCTTA
497 -G-----CTATCGCAACCCTTGGTCTGGTTAGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* ** * * * * * **
11579442 GACAACTAATGAAACGA----GTGGGTAGGCGGGCGGGCACTACGTCATCCAGAGAGACGGGATG
556 GCCAACCGACGAAACGAGCGGGCGGGCAAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* *
11579503 CGCAAGCCATGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
621 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
*
11579568 TGCCATTTTTATGGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
686 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
11579633 AAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTGTTAAAAT
751 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAAT
* *
11579698 TTTTTCAGAAGGA-TTTTAGGCCCCAAACTTGGTAGACATGATTCTTGTATTTTTGTTGGCATGC
816 TTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
*
11579762 ACAAAAAAATTCAGCTAAAAACTA
880 ACAAAAAAATTCAGCTAAAAACTC
* * *
11579786 AAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCCATTTGAGACACTTTAATGGCTA
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCCATTTCAGACACTTTAATGGCTA
* * * *
11579851 CTGGCCGCAAACCTGTAAAATATCAAATGCTCTTTAATGGGGTGTGAGTTCGT-GAGGTTTAATG
65 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATG
* * *
11579915 AGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCGCACACCCC
129 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC
* *
11579980 CC-GCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATACTCCGACGAT
194 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGAT
* * ** * * *
11580044 GGAGCCCTGGCAAAGGGAAATACGGCACCAGCAAATGCTCGAGCCCAGCAAGTGCTGCCGCAACC
259 GGTGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* *
11580109 CTTGGTCCGGTCCGATCTTAGACTGGGAATGATCTCTGTATGCTTAGACTGGGAATGAACTCCGT
324 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
11580174 ATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCAGCCAGAGGGGCGAGATGCGTA
389 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCA
* * *
11580239 AGCCGGGGATCGATCGGGTCCCCATCTGTAAGCTGTCGATCCTACTATCGCAACCCTTGGTCTGG
454 AGCCGGGGATCGATCGGGTCCCCCTCTGTATGCTGTCGATCCTGCTATCGCAACCCTTGGTCTGG
*
11580304 TTAGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCA
519 TTAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCA
* * * *
11580369 AGCGGGCGAGCACTACACCGGCCAGTGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
584 AGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
11580434 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATTGCTTGTAAATTGATA
649 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
11580499 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
714 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * *
11580564 TTTTTGAAACTTTTTGTGGTTCTGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCTCCAAAC
779 TTTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
11580629 TTGGCAGACATGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTC
844 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
11580689 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGTCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
11580754 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
11580819 GGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCATACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
*
11580884 GGCCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGG
196 GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGG
* * ** * * *
11580949 AGCCCTGGCAAAGGGAAATACGGCACCAGCAAATGCTCGAGCCCAGCAAGTGCTGCCGCAACCCT
261 TGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* *
11581014 TGGTCCGGTCCGATCTTAGACTGGGAATGATCTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
326 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * ** *
11581079 GCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCCGCAGGCCATAGGCACGGGATG-GTCAA
391 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCG-CAA
* * * *** * **
11581143 ACCGGGGATCGGTTGGGTCCCCCTCTACGTGCTGTTGATCCTGCTGCCGCAACCCTTGGTCTGGT
455 GCCGGGGATCGATCGGGTCCCCCTCTGTATGCTGTCGATCCTGCTATCGCAACCCTTGGTCTGGT
* *
11581208 T-GAATCTTAGACTGGGAATGAACTCAGTATACAC-AAGCCAACCGACGAAACGA----GCGGGC
520 TAG-ATCTTAGACTGGGAATGAACTCCGTATGC-CTAAGCCAACCGACGAAACGAGCGGGCGGGC
* *
11581267 AA----GCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
583 AAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
11581328 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
648 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
11581393 ACAATGGTCCTTTCAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCACA
713 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * **
11581457 ATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTCTTCGGAAGGAGTTTTGGCCTTAAA
778 ATTTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
11581522 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACTA
843 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
11581583 AAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAT
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * * *
11581648 TGGTAGCAAACCAGCAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTTGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * *
11581713 GGATAGGGGGCCAATATAAGGGCCACGTACCAGCACCCATCGCACATCATCTGTGCACACCCACC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC-CC
* * * * * *
11581778 CGG-CCCACTGATCGCCGGAACCCCAAT-CCGTCGATCAGGTTCTCCGGTGATGCTCTGGCGATG
195 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATG
* * * * * * * **
11581841 GTGCCCCGGTGAAGAAAAATGCGACACCAACAAATG-CCTAGCCCAGCATGTGCTGGTGCAACCC
260 GTGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * *
11581905 TTGGTCCGATCCGATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
325 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * *
11581970 TGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCAGCCAGAGGGACGAGATGCGTAA
390 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAA
* * * * *
11582035 GCCGAGGATCGGTCGGGTCCCCATCTGTAAGCTGTCGATCCTGCTATCGCAACCCTTGGTCCGGT
455 GCCGGGGATCGATCGGGTCCCCCTCTGTATGCTGTCGATCCTGCTATCGCAACCCTTGGTCTGGT
*
11582100 TAGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAA
520 TAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAA
* * * *
11582165 GCGGGCGAGCACTACACCGGCCAGTGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
585 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* **
11582230 TGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
650 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
11582295 AATGGTCCCTTAAGCGTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCACGAT
715 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
*
11582360 TTTTGAAACGTTTTACGGTT-TGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAAC
780 TTTTGAAACTTTTTACGGTTCT-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
11582423 TTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCTGCTAAAAACTC
844 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
11582483 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
11582548 TGGCAGCAAACCAGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
11582613 GGATAAGGGG-CAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCGCGCACCCCCT
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCC-
* *
11582677 CCGG-CCCCCCGATCG-CTGGAACCCCAATGTCGCCGGTCAGGTTCTCC---G--G---C-A--A
194 CCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGA
* * * * ** *
11582729 TGGTGCCCTGGTGAAGAAAAATACGGCACCACCACATGCCTGAGTCCAGCATGTGCTTTCTCAAC
258 TGGTGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * *
11582794 CCTCGGTCCTGTCCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTAGGAATGAACTCCG
323 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCG
* * * *
11582859 TATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGC
388 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGC
* * ** * * * **
11582924 AAGTCGGGGATC-AGTCGGGTCCCGCTCTGCGTGCTGTCGATCCT-CCAGCCGCAACACTCAGTC
453 AAGCCGGGGATCGA-TCGGGTCCCCCTCTGTATGCTGTCGATCCTGCTA-TCGCAACCCTTGGTC
* * * * *
11582987 CGGTCCA-ATCTTAGACTGGGAATGAACTCCGTATGCCTTAG-CAACCGATGAAACGAACGGGCG
516 TGGT-TAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * * * * *
11583050 GGCGAGTGAGCGTGCACTGCGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTG
580 GGCAAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * *
11583115 GTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAACT
645 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
11583180 CATACAATGGTCCCTTAAGCCTTCACGTCACGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
710 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
11583245 ATGATTTTTGAAACTTTTTCCAGTT-TGAGATTTTTTTAAATTTTTTCGAAAGGATTTTTGGCCC
775 ACGATTTTTGAAACTTTTTACGGTTCTG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * *
11583309 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATTCAAAAAAAAAATTCAGCTAAAAACT
839 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACT
11583374 C
903 C
* *
11583375 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTCTAATTGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
11583440 TGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGCGAGTTCTCAAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *** * *
11583505 GGAGAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGTAGATCATGTGCGTACACCCCTC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC-C
* * * **
11583570 CGG-CCCCCCGATCGTCGAAACCCCAATGCC-AC---C--G--ATCAAGT--T-CTCCGACGATG
195 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATG
* ** * * *
11583623 GTG-CCTCAGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATCTGCTACCGCAACC
260 GTGCCCT-GGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * *
11583687 CTCGATCCAGTCCGATCTTAGAATGGGAATGAACT-TCGTATGCTTATACTGGGAATGAACTCCA
324 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCG
* ** * * *
11583751 TATGCCTAAGTCAACCCATGAAACGAGAATGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATGCAC
388 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGC
** * * * *
11583816 AAGCCGGGGATCGGCCGGGTCCCCCCCTGCATGCTGCCGATCCTGCTATCGCAACCCTCTAG-CT
453 AAGCCGGGGATCGATCGGGTCCCCCTCTGTATGCTGTCGATCCTGCTATCGCAACCCT-TGGTCT
* * * **
11583880 GGTCTA-ATCTTAGACTGGGAATGGACTCCGTATACCTAAGCCAACCGATGAAACGAGCGGTTGG
517 GGT-TAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * * ** ** * *
11583944 TG--GGCGAGCGAGCACTACGCCGACCAGAGAGACAAGATTTGCAAGCCGTGGATCAAAAGGGTG
581 -GCAAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * * *
11584007 GAAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAAACT
645 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
*
11584072 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTC
710 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
11584137 ACGATTTTTGAAACTTTTTACGATTCAGGATTTTTTTAAATTTTTTTGGAAGGAGTTTTAGACCC
775 ACGATTTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* ** * *
11584202 AAACCTGGTAGACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAAATC
840 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
11584266 GAAGTGTACACA-ATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
1 GAAGTGTACA-AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
11584330 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
65 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
11584395 GGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC
130 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--CCC
* * * ** * *
11584460 CCTCGGCCCACCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCA
193 CC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACG
* * ** * * * **
11584525 ATGGTGCCCAGACGAAGAAAAATGTGGCACCACCACATGCCCGGGCCCAACATGTGCTGCCATAA
257 ATGGTGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * * *
11584590 CCCACGGTCTGATCCGATCTCAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
322 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
* ** * *
11584655 GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAATCGGCCAGAAGGGCAAGATGCG
387 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCG
* * * ** * ** * *
11584720 CAAGCCAGGGAACG-GCTGGGTCCCCCTCTGCGTGCTG-CTGATCCTACTGCCACAACCCTCGGT
452 CAAGCCGGGGATCGATC-GGGTCCCCCTCTGTATGCTGTC-GATCCTGCTATCGCAACCCTTGGT
*
11584783 CTGGTCT-GATCTTAG-CTTGGGAATGAACTCCGTATTCCTAAGCCAACCGACGAAACGAGCAGG
515 CTGGT-TAGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG
* * * *
11584846 G-GGGCGAGCGGGCGGGCGGGCACTGCGTCGGCCAGAGAGAC-GGATGCGCAAGTCGTGGATCGA
577 GCGGGC-A---AGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
11584909 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATCA-TTCTACGTGCCAATGCCATTTTTATGGC-
638 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTACGTGCCAATGCCATTTTTATGGCT
** *
11584972 TGTCAAATTCATACAAACAGTCCCTTAAAGCCTTCACGTGAAGTTTCATGTGCACAGATGACTCT
702 TGT-AAATTCATAC-AATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATG-GCA-AGACGACTC-
* * ** * *
11585037 GTATTTCTATTTTTCA-GCAATTTTCAAAAGTTTTACGGTTCTGGGATTTTTTTAAATTTTTTCA
761 GT-TTTCTATTTTTCACG-ATTTTTGAAACTTTTTACGGTTCT-GGATTTTTTAAAATTTTTTCG
* * ** *
11585101 GAAGGAGTTTTGGCCCCAAAACTTGGTAGACGTGGT-CTTGTATTTTTGGTAAGCATCGCACCAA
823 GAAGGAGTTTTGGCCCC-AAACTTGGTAGACATGATCCTTGTATTTTT-GTTGGCAT-GCACAAA
*
11585165 AAAAGTCAGCT-AAAACTC
885 AAAATTCAGCTAAAAACTC
*
11585183 GAAGTGTACAA-ATTTTGTGGACCATTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG-T
1 GAAGTGTACAAGATTTTGT-GACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
11585246 -CTCGGCAGCAAACCTATAAAATCTCAAATGCCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
64 ACT-GGCAGCAAACCTGTAAAATCTCAAATG-CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
11585310 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
127 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
* * * *
11585375 CCTCTCGGCCCCCCCGATCGACGAAACCCCAATACCGTCGGTCAGGTTCTCTGGTGATGCTCCGA
192 CC-C-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGA
* * *
11585440 CGATGGTGCCCTGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
255 CGATGGTGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * * * *
11585505 AATCCTCGGTTCGGTCTGATCTTAGATTGGAAATGAACT-TCATATGCTTAGACTGGGAATGAAC
320 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAAC
* * * * *
11585569 TCCATACGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGAT
384 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGAT
* * * ** * ** *
11585634 GCGCAAGTCGAGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTGGTGCCACAACCCTTGG
449 GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTATGCTGTCGATCCTGCTATCGCAACCCTTGG
* * * *
11585699 TCCGGTCCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGA
514 TCTGGT--TAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
*** * * * *
11585763 GCGGGTGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAACCCATGGATCGATAGG
577 GCGGGCAAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
11585828 GTGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
642 GT-G--GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
*
11585893 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTA
704 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
11585958 TTTTTCACGATTTTTGAAACATTTTACGGTT-TGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
769 TTTTTCACGATTTTTGAAACTTTTTACGGTTCTG-GATTTTTTAAAATTTTTTCGGAAGGAGTTT
*
11586022 TGGCCCCAAATTTGGTAGAC
833 TGGCCCCAAACTTGGTAGAC
11586042 GTCGAAACCC
Statistics
Matches: 6264, Mismatches: 752, Indels: 311
0.85 0.10 0.04
Matches are distributed among these distances:
884 2 0.00
886 1 0.00
888 1 0.00
889 2 0.00
890 271 0.04
891 468 0.07
892 934 0.15
893 319 0.05
894 389 0.06
895 348 0.06
896 11 0.00
897 2 0.00
898 35 0.01
899 86 0.01
900 399 0.06
901 60 0.01
902 145 0.02
903 672 0.11
904 18 0.00
905 268 0.04
906 4 0.00
907 4 0.00
908 3 0.00
909 83 0.01
910 50 0.01
911 59 0.01
912 38 0.01
913 12 0.00
914 39 0.01
915 65 0.01
916 84 0.01
917 350 0.06
918 263 0.04
919 4 0.00
920 35 0.01
921 34 0.01
922 2 0.00
923 106 0.02
924 596 0.10
925 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGG
TGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAG
CCGGGGATCGATCGGGTCCCCCTCTGTATGCTGTCGATCCTGCTATCGCAACCCTTGGTCTGGTT
AGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAAG
CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTGAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
Found at i:11581064 original size:26 final size:26
Alignment explanation
Indices: 11581028--11581080 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11581018 CCGGTCCGAT
* *
11581028 CTTAGACTGGGAATGATCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11581054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11581080 C
1 C
11581081 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11582840 original size:26 final size:26
Alignment explanation
Indices: 11582811--11582863 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11582801 CCTGTCCGAT
* *
11582811 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11582837 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11582863 C
1 C
11582864 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11584640 original size:26 final size:26
Alignment explanation
Indices: 11584611--11584660 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
11584601 ATCCGATCTC
11584611 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
11584637 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
11584661 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:11585565 original size:26 final size:26
Alignment explanation
Indices: 11585525--11585574 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
11585515 TCGGTCTGAT
* *
11585525 CTTAGATTGGAAATGAACTTCATATG
1 CTTAGACTGGAAATGAACTCCATATG
*
11585551 CTTAGACTGGGAATGAACTCCATA
1 CTTAGACTGGAAATGAACTCCATA
11585575 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:11586645 original size:26 final size:26
Alignment explanation
Indices: 11586609--11586687 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
11586599 CTAGTCTGAT
*
11586609 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11586635 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11586661 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11586687 C
1 C
11586688 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11588838 original size:26 final size:26
Alignment explanation
Indices: 11588802--11588854 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11588792 CCGATCTGAT
11588802 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11588828 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11588854 C
1 C
11588855 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11589729 original size:26 final size:26
Alignment explanation
Indices: 11589700--11589752 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
11589690 CTGGTCCGAT
11589700 CTTACACTAGG-AATGAAC-TCTGTATG
1 CTTACACT-GGCAATGAACTTC-GTATG
*
11589726 CTTAGACTGGCAATGAACTTCGTATG
1 CTTACACTGGCAATGAACTTCGTATG
11589752 C
1 C
11589753 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 20 0.83
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTACACTGGCAATGAACTTCGTATG
Found at i:11593506 original size:894 final size:896
Alignment explanation
Indices: 11588469--11600969 Score: 11663
Period size: 890 Copynumber: 14.0 Consensus size: 896
11588459 GGGCGGGCAT
*
11588469 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
11588534 CAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTTAGTTCTTGAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
11588599 GGCGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * * * *
11588664 CCCGATTGCCGGAACCCCAATGCCACTGGTCAGGTTCTCCGACGATGCTGCGACGATGGTGCCTC
196 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGGCGATGGTGCCCC
* * * ** * * * ** *
11588729 GATGAA-AAAAAAGATGGCAGTAACACATGCCCGAGCCCAACATGTGCTATCGTAACCCTTGGTC
260 GACGAAGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTC
* * * *
11588793 CGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
324 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
11588858 AGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGG
389 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GG
* * * * * * * ** * * *
11588923 GATCGGCCGGGTCCCCATCTGCGTGCTGCCGATCCTGTTACCACAACCCTTGGTCCGATCTGATC
453 GATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATC
* * ** * * * *
11588988 TTAGACTGGGAATTAACTCTGTATGCCTAAGCCAATTGACAAAATGAGCGGCCGTGCGGGCGGGC
518 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * * * * * *
11589053 ACTACACTGGCCAGAGAGACGGGATGCGCACGTCATAGATCGATAGGGTGGTAGCTGGGTTTAGG
583 ACTACGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** * * *
11589118 CACATCTTCATATTTCTGTGTGCTAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCTT
648 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* ** * *
11589183 TAAGACTTCATATGAAGTTTCATGGCAAGACGACTGCCTTTT-TATTTTTCACGATTTTTGAAAC
713 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-CGTTTTCTATTTTTCACGATTTTTGAAAA
* *
11589247 TTTTTGCGGTTC-AGGA-TTTTTAAAATTTTTTTCGGAAGGCGTTTTGGTCCCAAACTTGGTAGA
777 TTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGA
11589310 CGTGATCCTTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
840 CGTGATCC-TTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
11589369 TACAAGAATTTGTGACCATTTGAAAAAATTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
** * * *
11589434 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTACGAGTTCTTGAGGTTTGATAAGGGATAA
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * *
11589499 GGGGACAATATAAGGGCCAATTACCAGCACTCATCGCACATCATGCGCGGACACCCCCCGGCCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * * *
11589564 CCCGATCAG-CGGAACCCCAAT-TCGTCGGTCAGGTTCTCCGGTGATGCTCTGGGGATGGTGCCC
196 CCCGATC-GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGGCGATGGTGCCC
* *
11589627 CGATGAAG-AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTC
259 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTC
* * * * *
11589691 TGGTCCGATCTTACACTAGGAATGAACTCTGTATGCTTAGACTGGCAATGAACTTCGTATGCCTA
324 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* ** * * **
11589756 AGTCAACCCATGAAATAAACGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATAAGCAAGCCGGG
389 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * *
11589821 ATCGGTCGGGTCCCCCTCTGCGTGCTG-CTGATCCTGCTACCGCAACCCTCAGTCTGGTACAATC
454 ATCGGTCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATC
* * * *
11589885 TTAGACTGGGAATGAACTCTGTATGCTTAAGCCAATCAACGAAACAAGCAAGCGGGCGGGCGGGC
518 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G--AGCGGGCGGGCGGGC
* * * *
11589950 GGGCACTACACTGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
579 GGGCACTACGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * * **
11590015 TAGGTAAATCTTCATATTTTTGCATGCCAATGAGATTTTTATGGCTTGTAAATTCATACAATGGT
644 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
11590080 CCCTTAAGCCTTCACCTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCACGATTTTTGA
709 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * *
11590145 AACTTTTTGCAGTTC-AGGGTTTTTTGAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGT
774 AAATTTTTGCGGTTCGA-GATTTTTT-AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
*
11590209 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTG
837 AGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
11590270 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
11590335 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
11590400 GGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATTATGTGCGCACACCCCCCGGCCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * *
11590465 CCCGATCGCCGGAACCCCAACGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTC
196 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGGCGATGGTGCCCC
* * * * *
11590530 GATGAAGAAAAATACGACACCAGCACATGCCCGAGCCTAGCATGTGCTA-CAAAACCCTCGGTCT
260 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCT
* * * * *
11590594 GGTCCAATCTTAGACTGCGAATGAACGCCGTGTGCTTAGACTGGGAATGAACTCCGTATGCCTCA
325 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
11590659 GTTAACCTACGAAACGAGCGTGCGGGCGCTCAGCCAGCC-GAAGGGGTGGGATGCACAAATCGGG
390 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCGGGATGCGC-AAGCCGG
* * * * ** * * *
11590723 GACCGGCCGGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCCATAACCCCCGGTCTGGTCCAATC
453 GATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATC
* * *
11590788 TTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGA--------GCGAGCGGGC
518 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
** *
11590845 ACTACGCCGATCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
583 ACTACGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
11590910 CACATCTTCATATTTCTGA-GTGCCAATGCCATTTTTATGGCTTGTAGATTCATACAATGGTCCC
648 CACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
11590974 TTAAGCCTTTACCTGAAGTTTCATGGCGAGACGACTCGTTTTTTATTTTTCACAATTTTT-AAAA
712 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAA
* **
11591038 CTTTTTGCGATTC-AGGATTTTTTAAAATTTTTTTGGAAGGTTTTTTGGCCCCAAACTTGGTAGA
777 -TTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
11591102 CGTGATCCTTGTATTTTTGTTGCCATGCACAAAAAACTTTAGCTAAAAATTCGAAGTG
840 CGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
11591160 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
** * *
11591225 CAAACCTGTAAAATCTCAAATGCTAATTAAGGGGGTGTGAGTTCTCAAGGTTTGAT-ATGGTATA
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGGATA
* *
11591289 GGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG-C
130 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
* * * *
11591353 CCCCCGATCGTCAGAACCCCAACGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCC
194 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGGCGATGGTGCC
* * * * *
11591418 TCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTA-CAAAACCCTCGGT
258 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGT
* * *
11591482 CTGGTCCAATCTTAGACTGCGAATGAACTCCGTGTGCTTAGACTGGGAATGAACTCCGTATGCCT
323 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
** * * * * *
11591547 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTAGCCAGAGGGGTGGGATCCACAAATCGG
388 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC-AAGCCG
* * * * * * *
11591612 GGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCTTGCTACTGTAACCC-CGGTTTTGGTCCGA
452 GGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCCGA
* ** *
11591676 TCTTAGACTAGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGA--------GCGAGCGG
516 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
* * * * *
11591733 GCACTATGCTGGACAAAGAGATGGGATGC-ATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
581 GCACTACGCCGGCCAGAGAGACGGGATGCGA-AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
11591797 AGGCACATCTTCATATTTCTGA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
645 AGGCACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
11591861 CCCTTAAGCCTTCACCTGAAGTTTCATGGAAAGACGACTCGTTTTTTATTTTTCACGA-TTTTCA
709 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
11591925 AAACTTTTTGCGATTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTCCCCAAACATGGT
774 AAA-TTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
11591989 AGAGGTGATCCTTGTATTTTTTTTGGCGTGCATAAAAAAATTTC-GCTAAAAAATCGAATTG
837 AGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTG
* * *
11592050 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACATTAATGGCTGCTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
11592115 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGAGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
11592180 GGCGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGACCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCC
** * * *
11592245 CCCCGATCATCGGAACCCCAATGCCGCCAGTTAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCC
195 CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGGCGATGGTGCCC
** * * **
11592310 CGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCAAGTGCTACGGCAACCCTCGGTC
259 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTC
* * *
11592375 CGGTCCGATCTTCGACTGGGCATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
324 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * ***
11592440 AGTCAACCCACGAAACAAGCGTGCAGGCGTTCAGCCGGCCAAAGGGGCGGGATGTGCAAATAGGG
389 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * *
11592505 ATCGGTCGGGTCCCCCCCTATGTTCTG-CTGATCCTGTTGCTGCAACCCTCAGTCCGATCCGATC
454 ATCGGTCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATC
11592569 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GGC
518 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * * * * *
11592633 ACTATGCCAGCCTGAGAAATGGGATGC-AAAGTCGTGGATCGATAGGGTGATAGGTGGGTTTAGG
583 ACTACGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
11592697 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
648 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
11592762 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAAT
713 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAAT
*
11592827 TTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA-TATGGTAGAGG
778 TTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACG
* *
11592891 TGATCCTTGTATTTTTTTGGCGTGCACAAAAAAATTCAGCGAAAAACTCGAAGTG
842 TGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
11592946 TACAAGATTTTGTGTCCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
11593011 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
11593076 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCACACCCCCCGACCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * *
11593141 CCCGATCACCGAAACCCCAATGCCGCCAGTCAGGTTCTCCAGCGATGCTCCAGCG-TGGTGCCCC
196 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGGCGATGGTGCCCC
* * * * * * *
11593205 GGCAAAGAGAAATGCGGCACCAGCACATGCCTGAGCCCAGCAAGTGCTACCACAACTCTCGGTCC
260 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCT
* * * * * *
11593270 GGTCCGATCTTCGACTGGGCATGAACTCTGTACGCTTAGACTGGGAATGAACTCCATATGACTAA
325 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * *
11593335 GTCAACCCACGAAACAAGTGTGCGGGCACTCAGTCGGCCAGACGGGAGGGATGCGTAAACCGGGA
390 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGA
* * ** * * ** * ** *
11593400 TCGATCGGGTCCTCCTCTGTGTGTTGTTGATCCTATTGCCGTAACCCTCAGTCCAGTCCAATCTT
455 TCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTT
**
11593465 AGACTGGGAATGAACAACGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAC
520 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAC
* * * * * *
11593530 TACGCCAGCCAAAGAGACAGGATGCGAAAGTCATGGATCGATATGGTGGTAGGTGGGTTTAGGCA
585 TACGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
11593595 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTA
650 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
11593660 ACCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTT
715 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAATTT
* * * *** * * *
11593725 TTACGGTTTGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCTCCAAACATGGTAGAGGTGA
780 TTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
11593790 TCCTTGTATTTTTTTTGGCGTGCACAAAAAAATTCTGCTAAAAGCTCGAAGTG
845 TCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* ** *
11593843 TACAAGATTTTGTGTCCATTTGAAAAAAGTGTTGCCATTTGAGACACTTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
** * *
11593908 CAAACCTACAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
11593973 GGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCG
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC
* * * * *
11594038 CCCCGATCGTCGAAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCGGGGATGGTGCCC
195 CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGGCGATGGTGCCC
** * *
11594103 CGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCACAACCCTCGGTC
259 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTC
* * * *
11594168 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATTTGCCGA
324 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * **
11594233 AGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTTGGG
389 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGG
** * * * * ** ** * *
11594298 GATCGACCGGGTCCCCCTCTGCATGGTG-CTGATCCTGCTACCATAACCCTTGGTCTGGTACAAT
453 GATCGGTCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
* * * *
11594362 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAATGAGTGGGCGGGCGGGTGGG
517 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGG
** * * *
11594427 CGGGCACTACGCCGGCTTGAAAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
578 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** * *
11594492 TTAGACACATCTTCATATTTCTGTGTGGCAATTCCATTTTTATGGCTTGTAAATTCATACAATGG
643 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
11594557 TCCCTTAAGCCTTCACGTAAAGTTTCCTGGCAAGACGACTTGTTTTCTATTTTTCACGA-TTTTC
708 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** *
11594621 AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTCAAAGGAGTTTTGGCATGCACAAAAGA
773 AAAA-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGC---C-C-CAA-A
* * * * ** * * * *** * **
11594686 ATTCAGCTAAAAAC-TCA-AATTGTACAAGATTTTGTGACCAT-TTGAAAAAAGTGTC--C--CC
831 CTT--GGT--AGACGTGATCCTTGT---A-TTTTTTTG-GCATGCACAAAAAAAT-TCAGCTAAA
** *
11594744 ATTTC-AAAT-
886 AACTCGAAGTG
** * * * * * ** *** * * *
11594753 T-C----TTTAATGGCTACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAA-GG-----G
1 TACAAGATTTTGTGACCATTTG-A-AAAAAGTGTCCCCATTTCAGA--CACTTTAATGGCTACTG
* ** * * * * * * * ** *
11594806 G--G------TGTGAGTTCTC-GA-GGT-TTGATGAGGG-ATAAG-----G-GG--CCA--A--T
62 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* ** ** * * * * **** * *
11594847 ATA-AGGGCCAAGTACCAGCACCCA-TAGCA-CA-TCATGTGCACA-CACCCCCCCGGC-CCCCC
127 ATAGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCAT-CGCACATCATGTGCGC-ACACCCCC
****** * * * *
11594906 C-AATTGTCGGAACCCC--------AATGCCACCGGTCAGG-T-TCC-CG--G-T-----GATGG
189 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGGCGATGG
* * * ** *
11594951 TGCCCCGACGAAGAAAAATACGGCACCAGCACATACCCGATCCCAGCATGTGCTGTCGCAACCCT
254 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCT
* * * *
11595016 CGGTCTGGTCCGAACTTAAACTAGGAATGAA-TCAGTATGCTTAGACTGGGAATGAACTCCGTAT
319 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* *
11595080 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATACGCAAG
384 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * *
11595145 CCGGGGATCGGTCGGGTCACCCTCTACGTGTTGTAGATCCTGTTGCCGCAACCCTCATTCTGGTC
449 CC-GGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTC
* * * * *
11595210 TGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCTATCGACGGAACGA----GCGGGCGGG
513 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
** * *
11595271 CGGGCACTACGGTGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
578 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
11595336 TTAGGCACACCTTCATATTTGTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTG
643 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
11595401 TCCCTTAAGCCTTCACGTGAAGTTTGATGGCAATACGACTCGTTTTCTATTTTTCATGATTTTTG
708 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
11595466 AAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
773 AAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
11595531 GACGTGATCCTTGTATTCTTTTTTGCATGCACAAAAAAATTCAGCTAACAAA-TC-ATAGTG
838 GACGTGATCCTTGTATT-TTTTTGGCATGCACAAAAAAATTCAGCTAA-AAACTCGA-AGTG
* * *
11595591 TACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAGACACGTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
** *
11595656 CAAACAAGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
11595720 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCTCGG-C
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC-CGGCC
* * * * * * *
11595784 CACCCAATCGCCGGAACCCCAATGCCGTCTGTCAGTTTCTCCGGTGATGCTCCGACGATGGTGCC
194 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGGCGATGGTGCC
** * * * **
11595849 CCGGTGAAGAAAAATGCGACACCAGCATATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGT
258 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGT
** * * * *
11595914 -TCGGTTTGATCTTAGACTGGGAATGAACTCCGTCTTCTTAGATTGGGAATGAACTTCGTATGCC
323 CT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
** * ** * * * * ** *
11595978 TAAGTCAACCCATAAAATGAGCGTTTGGGCACTCAACCGGCTAGAGGGGCAGGATGCGCCTGTCG
387 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CC
* * * * * ** * **
11596043 GGGATCGTTCGTGTCCCCTTCTTCATGCTGTCGATCCTGCTGCCATAACCCTCGGTCTGGTCTAA
451 GGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGA
* * * ***
11596108 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCACTACT
516 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGGC-
** * *** * * * * ** * *
11596173 TATGC-CTATGTCAACCCATGAAACGAGCGTGTGGGTGATC-ATACGGCCAGAGGGGCGAGA-TG
579 -GGGCACTACG-CCGGCCA-GAGA-GA-C--G-GGATG--CGA-A-AGCC-GTGGATCGATAGGG
* ** * * * ** * * * *
11596235 CGCAAGCCG-GGGATCAGCCGA-ATCCCCCTCTGTGTGCTACCAATCTTGCTGCCACA-ACCCTC
631 TGGTAG--GTGGGTTTAGGC-ACATCTTCATAT-T-T-CT----A-C--G-TGCCA-ATGCCAT-
* * * ** * ** * * ** **
11596297 TGTCTGATCTGATCTTAGACTGGGAATGAATTCCGT-ATGCC-TAAGCCAACCGACGAAACGAGC
680 T-T-T--TATG-GCTT-G--T--AAATTCATACAATGGTCCCTTAAGCC-TTC-ACGTGA--AG-
*** ** * * **** *** * * * ** *
11596360 GGGCGGGCGGGCACTACGCCGGC-CAGAGAGAC-AGGATACGCAAGCTATGAATCGATAGGGTGG
730 TTTC---ATGGCA--A-GACGACTC-G-TTTTCTATTTTTCACGATTTTTGAA---A-A---T--
** * ** * * * ** * * * **
11596423 TAGGTG-GGTT-TAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAA-
778 T-TTTGCGGTTCGA-G-ATTTTTTAAAATTT-T-TTTG-GAA-G-GA-GTTT-TGGC-CCCAAAC
** * * * ** * * **** ***
11596485 TTCATACAACGGTCCCTTCAGCCTTCACGTGATGTTTCATGGCAAG-AC-GACTCGTT-TTTTAT
832 TTGGTA-GAC-G-----TGATCCTT---GT-AT-TTTTTTGGCATGCACAAAAAAATTCAGCTA-
**** * ** *
11596547 TTTTCACGATTTT
884 AAAACTCGAAGTG
* * * ** *** * * * *
11596560 TAAAACATTTTGCGGTTCAAGATTTTTTAAAA-T-T----TTTTCGAAAGGAGTTT--TGGCCCT
1 TACAAGATTTT---G-TGACCATTTGAAAAAAGTGTCCCCATTTC-AGA-CACTTTAATGG--CT
* * *** * *** * *** ****** * ***
11596617 AAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCG
58 --AC-TGGCAG-C-A-AACC-TGTA-AAAT-CTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTCG
* * * * ** * * * ** *
11596682 AAGTGT-A-CA-AGATTTTGTGACC-ATTTGAA---AAAAGT----GTC-CCCATTTCAGACACT
113 AGGTTTGATGAGGGA-TAGGGGGCCAATAT-AAGGGCCAAGTACCAG-CACCCA--TC-G-CACA
* * * *** * *** * * * * * ** *** * *
11596735 TTA-ATG-GC-TA-CTGGCAGCAAACCTGTAAAATC-TC-AAATGCTCTTTAAGGGCGTGTGA-G
171 TCATGTGCGCACACCCCCCGGCCCCCCCG----ATCGCCGGAA-CCCCAATGCCGCCG-GTCAGG
* * * ** * *** * * *** *
11596793 TTCT-CGAGGTTTGATGAGG-GATATGGGGCCAATATGAGGGCCAA----GTACCAGCAC---CC
230 TTCTCCG-CG-ATGCTCCGGCG--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
*** * * ** * * * * *
11596849 ATCGCACATCATGTGCTGTCGCAACCCTCGGTCTGGTCCGAACTTAAACTAGGAATGAA-TCAGT
291 CGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
*
11596913 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTC
356 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
11596978 AACCGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGGTCGGGTCACCCTCTACGTGTTGTCGA
421 AGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGA
* * * *
11597043 TCCTGTTGCCGCAACCCTCATTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
485 TCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * ** * *
11597108 CTATCGACGGAACGA----GCGGGCGGGCGGGCACTACGGTGGCCAGAGAGATGGGATGCGCAAG
550 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGAAAG
* * * *
11597169 CCGTGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCAT
615 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
*
11597234 TTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
680 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
11597299 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTT
745 ACTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT
* *
11597364 GGAAGGGGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAAT
810 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAA-
11597428 AAATTCAGCTAAAAACTCGAAGTG
873 AAATTCAGCTAAAAACTCGAAGTG
* *
11597452 TACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
11597517 CAAACTTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
11597582 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACATCCCCTGGCCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * * *
11597647 CCCGATCGTCGGAGCCCCAGTGCCCCCGATCAGGTTCT-C-CGA--------CGATGGTGCCCCG
196 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGGCGATGGTGCCCCG
* * * **
11597702 ACGAAGAAAAATGAGGCACCAGCATATGCTCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCTG
261 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCTG
* * *
11597767 ATCCGATCTTAGGCTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
326 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * **
11597832 T------------C-AGC---C--G-GC-CA----G--AGA--GGAGAGATGCACAAGCCCAGAT
391 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGAT
** * * * * *
11597869 CAATCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTA
456 CGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTA
* * * *
11597934 GACTAGAAATGAACTCCGTATGCCAAAGGCAACCGACGAAACGAGTGGGCGGGCGGGAGGGTGGG
521 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A---------C--GA------G
* * * * *
11597999 CGGGCGGGCGGGCGGGCACTACACCGGCTAGAGAGACGGGATGTGCAAGTCGTGGATCGATAGGG
566 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGG
* * * *
11598064 TGGTAGGTGGGTTTAGGCCCATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAA
631 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
*
11598129 TTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
696 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
11598194 TCACGA-TTTTCAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGA
761 TCACGATTTTTGAAAA-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGC
* *
11598258 CCCAAACTTGGTAGACGTGATCCTTGTATTTTCGTTGGCATGCACAAAAACATTCAGCTAAAAAC
825 CCCAAACTTGGTAGACGTGATCCTTGTATTTT-TTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
11598323 TCGTAGTG
889 TCGAAGTG
*
11598331 TACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
11598396 CAAACTTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
11598461 GGGTCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTGGCCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * *
11598526 CCCGATCGTCGGAGCCCCAGTGCCGCCGGTCAGGTTCT-CGATGATGCTCCGGCGATGGTGCCCC
196 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGGCGATGGTGCCCC
* * * * * *
11598590 GACGTAGAAAAATGCAGCACCAGCTCATGCCCGAGCCCAGCATGTGTTGCCATAACCCTCGGTCT
260 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCT
** * *
11598655 AATCCGATCTTAGGCTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
325 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* ** * * * **** *
11598720 GTCAAGCCATAAAATGTGCGTGCGGGCGCTCAGCCGGCCAGATGTTTTGAATGCGCAAGCCGGGG
390 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGG
* ** * * * * ** *
11598785 ATCGGCCGCATCCCCCTCTACGTGCTGTTGATCCTACTACCGCAACCCTCAATCCAGTCTGATCT
454 ATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCT
* * ** *
11598850 TAGA-TAGGGAATGAACTCCGTGTGCCAAAGCCAACCGACGAAACGA----GTTGGCGGGTGGGC
519 TAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * * *
11598910 ACAACGTCGGCCAGAAAGACGGGATGCGTAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGG
583 ACTACGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
11598975 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
648 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
11599040 TAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT-AAAAC
713 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAA-
* * * * * *
11599104 TTTTTACGGTTC-AGGATTTTGTAAAATTTTTTCGAAAGGAATTTT-GCCCCAAAACTTGGTACA
777 TTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCC-AAACTTGGTAGA
11599167 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
840 CGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
11599225 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACATTTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
11599290 CAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
11599355 GGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-CACACCCCCC-GACCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* *
11599418 CCCGATCCCCGGAACCCC-ATGCCGCCGGTCAGG-T-T---C--T-CT--GGCGATAGTGCCCCG
196 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGGCGATGGTGCCCCG
* * * *
11599472 ACGAAGAAAAATGTGGCACCAGCAAATGCCCGAGCCGAGCATGTGCTACCACAACCCTCGTTCTG
261 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCTG
* * *
11599537 GTCCGATCTTAGATTGGTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCTTATGCCTAAG
326 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
11599602 TCAACCCACGAAATGAGTGTGTGGGCGCTCAACCAGCAAGAGGGGCGGGATGCGCAAGCCGAGGA
391 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGA
** * * * * * * * * *
11599667 TCGACCAGGTCCCCCTCTATGTGCTATCGATCCCGCTGCTGTAACCCCCGGTCTGGTCCAATCTT
455 TCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTT
* * *
11599732 AGACTGGGAATGAACTCCATATACCTAAGCCAACTGACGAAACGAGCGAGGGGGCGGGCGGGCGG
520 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGCGGGCGG
*
11599797 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAA-CCGTGGATCGATATGGTGGTAGGTGGGTTT
581 GCACTACGCCGGCCAGAGAGACGGGATGCG-AAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
11599861 AGGCACACCTTCATATTTCTACGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAAT-G--
645 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
11599923 ------G---TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTTTGA
710 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGA
* * * *
11599979 AACTTTTTACGGTTCGAGATTTTGTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT--
774 AAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
11600042 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAAGTG
839 ACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTG
* * *
11600102 TATAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
11600167 CAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
11600231 GGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACATCCCCCGGCCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
*** * * *
11600296 CCCGATCATTGGAACCCTAATGCCGCCGATCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCC
196 CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGGCGATGGTGCCCC
** * * * * * * **
11600361 GGTGAAAAAAAATACTGACACCAGCGCATGCCTGAGCCCAGCATGTGCTACCGCAATACTCGGTC
260 GACGAAGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTC
* * *
11600426 TGGTCTGATCTCAGACTGGGAATGAACTCTGTATGCTTAGA-TCGGGAATGAACTCCGTATGCCT
324 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCT
* * * * * * * * * *
11600490 AAGTCAACTCATGGAATGAACGTGCGGGCGCTCAACCAGACGGAGGGGCGGGATGCCCAAGCCGG
388 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-G
* * * * * *
11600555 GGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACTGCAACCCTCAGTCTGATCTGAT
452 GGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
*
11600620 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCGGG
517 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGC--G--GGCGGG
* * * * * *
11600685 TGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGTTTGATAGGGTGGTAGGT
574 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGT
* *
11600750 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
639 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
11600815 GTGGTCACC-TAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGA-
704 ATGGTC-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * *
11600878 TTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAAATTTTTTTGGAAGGAGTTTTGGGCCCAAA
768 TTTTGAAAA-TTTTTGCGGTTCGAGATTTTTT-AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
11600943 CTTGGTAGACGTGATCCTTGTATTTTT
831 CTTGGTAGACGTGATCCTTGTATTTTT
11600970 GTGACCATAA
Statistics
Matches: 9534, Mismatches: 1586, Indels: 953
0.79 0.13 0.08
Matches are distributed among these distances:
832 6 0.00
833 12 0.00
834 4 0.00
835 2 0.00
836 9 0.00
837 3 0.00
838 4 0.00
839 3 0.00
840 7 0.00
841 9 0.00
842 6 0.00
843 10 0.00
844 223 0.02
845 7 0.00
846 2 0.00
848 1 0.00
852 179 0.02
853 94 0.01
854 4 0.00
855 91 0.01
856 21 0.00
857 3 0.00
858 5 0.00
859 1 0.00
860 1 0.00
861 2 0.00
862 1 0.00
863 4 0.00
864 3 0.00
865 16 0.00
866 1 0.00
867 2 0.00
868 1 0.00
869 12 0.00
870 11 0.00
871 11 0.00
872 10 0.00
873 8 0.00
874 12 0.00
875 7 0.00
876 118 0.01
877 189 0.02
878 91 0.01
879 537 0.06
880 16 0.00
881 262 0.03
882 22 0.00
883 59 0.01
884 54 0.01
885 11 0.00
886 4 0.00
887 16 0.00
888 30 0.00
889 281 0.03
890 1114 0.12
891 690 0.07
892 165 0.02
893 23 0.00
894 851 0.09
895 395 0.04
896 442 0.05
897 521 0.05
898 242 0.03
899 225 0.02
900 310 0.03
901 454 0.05
902 206 0.02
903 154 0.02
904 229 0.02
905 19 0.00
906 28 0.00
907 90 0.01
908 25 0.00
909 30 0.00
910 5 0.00
911 11 0.00
912 28 0.00
913 6 0.00
914 4 0.00
915 20 0.00
916 4 0.00
917 14 0.00
918 100 0.01
919 2 0.00
920 1 0.00
921 4 0.00
922 1 0.00
923 8 0.00
924 3 0.00
925 3 0.00
926 1 0.00
927 11 0.00
928 7 0.00
929 10 0.00
930 1 0.00
932 10 0.00
933 7 0.00
934 11 0.00
935 1 0.00
936 3 0.00
937 2 0.00
938 9 0.00
940 4 0.00
941 1 0.00
942 2 0.00
943 13 0.00
944 1 0.00
946 3 0.00
947 1 0.00
948 3 0.00
949 20 0.00
950 8 0.00
951 3 0.00
952 6 0.00
953 15 0.00
954 2 0.00
955 2 0.00
956 2 0.00
957 3 0.00
958 4 0.00
959 8 0.00
960 12 0.00
961 7 0.00
962 6 0.00
965 1 0.00
966 177 0.02
967 59 0.01
968 5 0.00
969 21 0.00
970 15 0.00
971 19 0.00
972 15 0.00
973 29 0.00
974 23 0.00
975 11 0.00
976 3 0.00
977 5 0.00
978 8 0.00
979 10 0.00
980 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGGCGATGGTGCCCCG
ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCTG
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGAT
CGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAATTTT
TGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
Found at i:11595067 original size:25 final size:26
Alignment explanation
Indices: 11595030--11595081 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
11595020 CTGGTCCGAA
11595030 CTTAAACTAGGAATGAA-TCAGTATG
1 CTTAAACTAGGAATGAACTCAGTATG
* * *
11595055 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCAGTATG
11595081 C
1 C
11595082 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCAGTATG
Found at i:11596928 original size:25 final size:26
Alignment explanation
Indices: 11596891--11596942 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
11596881 CTGGTCCGAA
11596891 CTTAAACTAGGAATGAA-TCAGTATG
1 CTTAAACTAGGAATGAACTCAGTATG
* * *
11596916 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCAGTATG
11596942 C
1 C
11596943 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCAGTATG
Found at i:11597810 original size:26 final size:26
Alignment explanation
Indices: 11597774--11597826 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11597764 CTGATCCGAT
* *
11597774 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11597800 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11597826 C
1 C
11597827 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11597989 original size:4 final size:4
Alignment explanation
Indices: 11597980--11598015 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
11597970 CGAAACGAGT
* *
11597980 GGGC GGGC GGGA GGGT GGGC GGGC GGGC GGGC GGGC
1 GGGC GGGC GGGC GGGC GGGC GGGC GGGC GGGC GGGC
11598016 ACTACACCGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.03, C:0.19, G:0.75, T:0.03
Consensus pattern (4 bp):
GGGC
Found at i:11598692 original size:26 final size:26
Alignment explanation
Indices: 11598663--11598715 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11598653 CTAATCCGAT
*
11598663 CTTAGGCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
11598689 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11598715 C
1 C
11598716 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11599573 original size:26 final size:26
Alignment explanation
Indices: 11599544--11599596 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11599534 CTGGTCCGAT
* *
11599544 CTTAGATTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11599570 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11599596 C
1 C
11599597 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11600667 original size:891 final size:883
Alignment explanation
Indices: 11598000--11600971 Score: 3789
Period size: 894 Copynumber: 3.3 Consensus size: 883
11597990 GAGGGTGGGC
* * * *
11598000 GGGCGGGCGGGCGGGCACTACACCGGCTAGAGAGACGGGATGTGCAAGTCGTGGATCGATAGGGT
1 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
11598065 GGTAGGTGGGTTTAGGCCCATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAAT
66 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAAT
*
11598130 TCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
131 TCATACAATGGT--C---A--C--CA-GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * * *
11598195 CACGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGACC
186 CACGATTTTCAAAACTTTTTACGGTTCGAGATTTTGTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* *
11598260 CAAACTTGGTAGACGTGATCCTTGTATTTTCGTTGGCATGCACAAAAACATTCAGCTAAAAACTC
251 CAAACTTGGTA-ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
11598325 GTAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
315 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
11598390 TGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAG
380 TGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
11598455 GGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCT
445 GGATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-GCACACCCCC-
* * * *
11598520 GGCCCCCCCGATCGTCGGAGCCCCAGTGCCGCCGGTCAGGTTCTCGATGATGCTCCGGCGATGGT
507 GGCCCCCCCGATCATCGGA-ACCCAATGCCGCCGGTCAGGTTCTCGA-GATGCTCTGGCGATGGT
* * * * * *
11598585 GCCCCGACGTAGAAAAATGCAGCACCAGCTCATGCCCGAGCCCAGCATGTGTTGCCATAACCCTC
570 GCCCCGACGAAGAAAAAT-CTGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTC
** * *
11598650 GGTCTAATCCGATCTTAGGCTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
634 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * **** *
11598715 CCTAAGTCAAGCCATAAAATGTGCGTGCGGGCGCTCAGCCGGCCAGATGTTTTGAATGCGCAAGC
699 CCTAAGTCAA-CCATGAAATGAGCGTGCGGGCGCTCAACCAG-CAGAGGGGCGGGATGCGCAAGC
** * * * * *
11598780 CGGGGATCGGCCGCATCCCCCTCTACGTGCTGTTGATCCTACTACCGCAACCCTCAATC-CAGTC
762 CGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACTGCAACCCTCAGTCTGA-TC
* * *
11598844 TGATCTTA-GATAGGGAATGAACTCCGTGTGCCAAAGCCAACCGACG-AA--A-CGA--
826 TGATCTTAGGCT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGG
** * * * * * *
11598896 --GTTGGCGGGTGGGCACAACGTCGGCCAGAAAGACGGGATGCGTAAGCCGTGGATCGATAGTGT
1 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
11598959 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
66 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAAT
*
11599024 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTT
131 TCATACAATGGT--C---A--C--CA-GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * *
11599089 CATGATTTTTAAAACTTTTTACGGTTC-AGGATTTTGTAAAATTTTTTCGAAAGGAATTTT-GCC
186 CACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTGTAAAATTTTTTCGGAAGGAGTTTTGGCC
11599152 CCAAAACTTGGTACACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
250 CC-AAACTTGGTA-ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
11599217 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACATTTTAATGGCT
313 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
11599282 ACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
378 ACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
11599347 AGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCCACACCCCC
443 AGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGCACACCCCC
* * ** * *
11599412 CGACCCCCCGATCCCCGGAACCCCATGCCGCCGGTCAGG---T-----T-CTCTGGCGATAGTGC
507 GGCCCCCCCGATCATCGGAACCCAATGCCGCCGGTCAGGTTCTCGAGATGCTCTGGCGATGGTGC
* * * *
11599468 CCCGACGAAGAAAAATGTGGCACCAGCAAATGCCCGAGCCGAGCATGTGCTACCACAACCCTCGT
572 CCCGACGAAGAAAAATCT-GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGG
* * *
11599533 TCTGGTCCGATCTTAGATTGGTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCTTATGCC
636 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
11599598 TAAGTCAACCCACGAAATGAGTGTGTGGGCGCTCAACCAGCAAGAGGGGCGGGATGCGCAAGCCG
701 TAAGTCAA-CCATGAAATGAGCGTGCGGGCGCTCAACCAGC-AGAGGGGCGGGATGCGCAAGCCG
* * * * * * * * * * * **
11599663 AGGATCGACCAGGTCCCCCTCTATGTGCTATCGATCCCGCTGCTGTAACCCCCGGTCTGGTCCAA
764 GGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACTGCAACCCTCAGTCTGATCTGA
* * * *
11599728 TCTTAGACTGGGAATGAACTCCATATACCTAAGCCAACTGACGAAACGAGCGAGG
829 TCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGG
* *
11599783 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAACCGTGGATCGATATGGT
1 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
11599848 GGTAGGTGGGTTTAGGCACACCTTCATATTTCTACGTGCCAATACCATTTTTATGGCTTGTAAAT
66 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAAT
*
11599913 TCATACAATGGTCA-C-GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTT
131 TCATACAATGGTCACCAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTT
**
11599976 TGAAACTTTTTACGGTTCGAGATTTTGTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
195 CAAAACTTTTTACGGTTCGAGATTTTGTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
11600041 T-ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAAGTGTAT
260 TAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTAC
* *
11600105 AAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAA
324 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
11600170 ACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
389 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
11600235 CCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACATCCCCCGGCCCCCCCG
454 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-GCACA-CCCCCGGCCCCCCCG
* * **
11600300 ATCATTGGAACCCTAATGCCGCCGATCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGTG
517 ATCATCGGAACCC-AATGCCGCCGGTCAGGTTCT-CGA-GATGCTCTGGCGATGGTGCCCCGACG
* * * * **
11600365 AAAAAAAATACTGACACCAGCGCATGCCTGAGCCCAGCATGTGCTACCGCAATACTCGGTCTGGT
579 AAGAAAAAT-CTG-CACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGGT
* * *
11600430 CTGATCTCAGACTGGGAATGAACTCTGTATGCTTAGA-TCGGGAATGAACTCCGTATGCCTAAGT
642 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGT
* * * *
11600494 CAACTCATGGAATGAACGTGCGGGCGCTCAACCAGACGGAGGGGCGGGATGCCCAAGCCGGGGAT
706 CAAC-CATGAAATGAGCGTGCGGGCGCTCAACCAG-CAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * *
11600559 CGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACTGCAACCCTCAGTCTGATCTGATCTTA
769 CGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACTGCAACCCTCAGTCTGATCTGATCTTA
11600624 GGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGG
834 GGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGA--GG
* * * * *
11600676 GCAGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGTTTGATAGG
1 G--GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
11600741 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
64 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAA
* * *
11600806 ATTCATACAGTGGTCACCTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCATTTTCTATTT
129 ATTCATACAATGGTCACC--AG--------TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
11600871 TTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAAATTTTTTTGGAAGGAGTTTTGG
184 TTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTGT-AAAATTTTTTCGGAAGGAGTTTTGG
*
11600936 GCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
248 CCCCAAACTTGGTA-ACGTGATCCTTGTATTTTTGT
11600972 GACCATAAAA
Statistics
Matches: 1808, Mismatches: 211, Indels: 101
0.85 0.10 0.05
Matches are distributed among these distances:
876 98 0.05
877 171 0.09
878 82 0.05
879 21 0.01
880 1 0.00
881 252 0.14
882 5 0.00
884 2 0.00
885 3 0.00
887 1 0.00
888 1 0.00
889 129 0.07
890 30 0.02
891 264 0.15
892 16 0.01
893 17 0.01
894 455 0.25
895 135 0.07
896 1 0.00
899 1 0.00
906 27 0.01
907 75 0.04
909 21 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (883 bp):
GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAAT
TCATACAATGGTCACCAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
AAAACTTTTTACGGTTCGAGATTTTGTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
TTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGCACACCCCCGGCCCCCCCGATCA
TCGGAACCCAATGCCGCCGGTCAGGTTCTCGAGATGCTCTGGCGATGGTGCCCCGACGAAGAAAA
ATCTGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGGTCCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCATGAA
ATGAGCGTGCGGGCGCTCAACCAGCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCC
CCTCTACGTGCTGTCGATCCTGCTACTGCAACCCTCAGTCTGATCTGATCTTAGGCTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGG
Found at i:11601639 original size:26 final size:26
Alignment explanation
Indices: 11601610--11601662 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11601600 CCGGTCCGAT
* * *
11601610 CTTAGACTGGAAATTAACTCCGTATG
1 CTTAGAATGGAAATGAACTCCATATG
*
11601636 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGAAATGAACTCCATATG
11601662 C
1 C
11601663 GTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGAAATGAACTCCATATG
Found at i:11604293 original size:895 final size:896
Alignment explanation
Indices: 11600993--11606821 Score: 7862
Period size: 895 Copynumber: 6.6 Consensus size: 896
11600983 ATTCAGCTAA
* *
11600993 AGAGACGGGATGCGCATGCCGTGAATCGATA-GGTGGTAGGTGGGTTTAGG--CA----CATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
11601051 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
66 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * ** **
11601116 AAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGGG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGG
* *
11601181 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATGTT
196 ATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * *
11601246 TCTTGGCGTGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
261 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * * * * * **
11601311 TAAA-TGTTCCCATTTCAGACACTTTAATGGTTGCCGGCAACAAACCTGTAAAATCTGGAATGCT
326 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
11601375 CTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGCCCAAGTAC
391 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
11601440 CAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGA---TC--ACCG-GAAT--
456 CAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCACGATCGTCGGAGCGCCAATGC
* * * * * *
11601496 C-CC---AATG-TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATTACCGCACCA
521 CGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGAGCCCCGACGAAGAAAAA-TGCGGCACCA
* * * * * * ** *
11601556 GCACATGCCCGAGCCTACCATGTGCTGGTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGA
585 ACACATGCCCGAGCCCAGCATGTGC---TGCCGCAACCCTCGGTCCGGGCCGATCTTTGGTTGGG
* * * *
11601621 AATTAACTCCGTATGCTTAGAATGGGAATGAACTCCATAT-GCGTAAGTCAACCCATGAAACGAG
647 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGC-TAAGTCAACCCACGAAACGAG
* ** * * * ** * * * *
11601685 CATGCGGGCACTCAACCGGCCAGAGTGGCAGGATGTGCAAGCCGGGGATCGATCGGGTCCCTCTC
711 CGTGCGGGTTCTCAACCGGCCAAAGGGGCGGGATACGCAAGTCAGGGATCGGTCGGGTCCCCCTC
* * ** ** *
11601750 TA-CGTTCT-ACAGATCCTGCTATCGCAACCCTCGGTCCACTCTGATCTTAGACTGGGAATGAAC
776 -AGCGTGCTGCCA-ATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* ** * * * * *
11601813 TCTGTATGCCTAAAACAACTGACGAAACAAGTGGGCGGGCAGGCAGACGGGCACTATGTCGGCCA
839 TCCGTATGCCTAAGCCAACCGACG--A-AA-TGAGCGGTC-GG--G-CGGGCACTACGTCGACCA
11601878 G
896 G
** * *
11601879 AGAGACGGGATGCGTGAGCCGTGTATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
11601944 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTG
66 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
11602009 AAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGG
* * ** * * *
11602074 ATTTTTTAAAATTTTTTCAGAAGGAGTTTTCACCCCAAACCTGGTAGACGTGATCCCTGAATTTT
196 ATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * *
11602139 TGTTGGAATGCACAAAAAAATTCAGCGAAAAACTCGAAGGGTACAAGATTTTGTGACCACTTGAA
261 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
11602204 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
326 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
11602269 CTTTAAGGGGGTGTGAGTTCTCGGGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGCAC
391 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * *
11602334 CAGCACCCATCGCACATCCTGTGCGCACACCCCCACCCGGTGCCCC-CGATCGTCGGAACCCCAA
456 CAGCACCCATCGCACATCATGTGCGCACA-CCCC-CTCGG-CCCCCACGATCGTCGGAGCGCCAA
** ** * **
11602398 TGCCATCGGTCAGGTTCTCCGATGATGCTCCGACGATGGAGCCCCGATAAAGAAAAATGCGGCAC
518 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGAGCCCCGACGAAGAAAAATGCGGCAC
* *** * ** *
11602463 CAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAATCTGATCTCAGATTGGGA
583 CAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGGCCGATCTTTGGTTGGGA
* * * *
11602528 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACAAAACGAGCG
648 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCG
* * * * * * * *
11602593 TGCGAGTGCTCAACCGGCCAGAGGGGCGGGATGCGAAAGTCGGGGCTCGATCGGGTCCCCCTCTA
713 TGCGGGTTCTCAACCGGCCAAAGGGGCGGGATACGCAAGTCAGGGATCGGTCGGGTCCCCCTC-A
* * * * * ** * * * *
11602658 -CATGCTACCAATCCTGCTACTGTAACCCTCAATCTGGTCTGATCTTACACTGGGAATGAACTCT
777 GCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
11602722 GTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACGTCGGCTAG
842 GTATGCCTAAGCCAACCGACGAAATGAGCGGTCGGGCGGGCACTACGTCGACCAG
* * * **
11602777 AGAGACAGGATGCGCAAGTCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGTGCATCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
11602842 TCTGCATGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
66 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * *
11602907 AGGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTACGAAACTTTTTACGGTTCGGG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGG
*
11602972 ATTTTTTAAAATTTTTTCGGAAGAAT-TTTTGGCCCCAAACTTGGTAGACAG-GATCCTTGTATT
196 ATTTTTTAAAATTTTTTCGGAAG-GTGTTTTGGCCCCAAACTTGGTAGAC-GTGATCCTTGTATT
* ** *
11603035 TTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACGGGATTTTGTAACCATTTG
259 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * *
11603100 AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCACCAAAGCTGTAAAATCTCAAATG
324 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* **
11603165 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTAAAGT
389 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
11603230 ACCAGCACCCATCGCACATCATGTGCGCAGACCCCCTCGGCCCCCACGATCATCGGAGCGCCAAT
454 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCACGATCGTCGGAGCGCCAAT
* *
11603295 GCCGTCGGTCAGGTTC-CCTGGCGATGCTCCGGCGATGGAGCCCCGGCGAAGAAAAATGCGGCAC
519 GCCGCCGGTCAGGTTCTCC-GGCGATGCTCCGGCGATGGAGCCCCGACGAAGAAAAATGCGGCAC
* *
11603359 CAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGGCCAATCTTTGGTTGGGA
583 CAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGGCCGATCTTTGGTTGGGA
11603424 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCG
648 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCG
*
11603489 TGCGGGTTCTCAACCGGCCAAAGGGGCGGGATATGCAAGTCAGGGATCGGTCGGGTCCCCCTCAG
713 TGCGGGTTCTCAACCGGCCAAAGGGGCGGGATACGCAAGTCAGGGATCGGTCGGGTCCCCCTCAG
** * * *
11603554 CGTGCTGCCGTTTCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
778 CGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* **
11603619 TATGCCTAAGCCAACCGACGAAATGAGCGGTCGGGCGGGCACTACGCCGGTCAG
843 TATGCCTAAGCCAACCGACGAAATGAGCGGTCGGGCGGGCACTACGTCGACCAG
* * * *
11603673 AGAGACGGGACGCGCAAACCGTGGATCGATAGGGTGGTAAGAGGGTTTAGGCACATCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
11603738 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAA-TAATACAATGGTCCCTTAAGCCTTCACGTG
66 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* *
11603802 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTACGGTTCGGG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGG
11603867 ATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAAACTTGGTAGACGTGATCCTTGTATTT
196 ATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTT
* *
11603932 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGCAGTGTACAAGATTTTGTGACC-TTCTG
260 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT-TG
*
11603996 -AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATG
324 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
11604060 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAATGGCCAAGT
389 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
11604125 AGCAGCACCCATCGCACATCATGTGCGCAAACCCCCTCGGCCCCCACGATCGTCAGAGCGCCAAT
454 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCACGATCGTCGGAGCGCCAAT
* *
11604190 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGATCCCCGGCGAAGAAAAATGCGGCACC
519 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGAGCCCCGACGAAGAAAAATGCGGCACC
* *
11604255 AACACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGAGCCGATCTTTGGTTGGGAA
584 AACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGGCCGATCTTTGGTTGGGAA
** * *
11604320 ACAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGGCTAAGTCAACCCACGAAACGAGCGT
649 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGT
11604385 GCGGGTTCTCAACCGGCCAAAGGGGCGGGATACGCAAGTCAGGGATCGGTCGGGTCCCCCTCAGC
714 GCGGGTTCTCAACCGGCCAAAGGGGCGGGATACGCAAGTCAGGGATCGGTCGGGTCCCCCTCAGC
* ** *
11604450 GTGCTGCCATTTTTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
779 GTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
*
11604515 ATGCCTAAGCCAACCGACGAAATGAGCGGTCGGGCGGGCACTACGCCGACCAG
844 ATGCCTAAGCCAACCGACGAAATGAGCGGTCGGGCGGGCACTACGTCGACCAG
* * *
11604568 AGAGACGGGACGCGCAAACCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
11604633 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAA-TAATACAATGGTCCCTTAAGCCTTCACGTG
66 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * *
11604697 AAGTTTCATTGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAAATTTTTACGGTTTGGG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGG
* *
11604762 ATTTGTTAAAATTTTTTCGGAAGGTGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTT
196 ATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
*
11604827 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATC-TTCTGA
261 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT-TGA
*
11604891 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGC
325 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
11604956 TCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATTTAAGGGCCAAGTA
390 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * * * *
11605021 CCAGCAACCATCGCACATCATGTGCGTAGACCCCTTCGGCCCCCACGACCATCGAAGCGCCAATG
455 CCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCACGATCGTCGGAGCGCCAATG
*
11605086 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGAGCCCCAACGAAGAAAAATGCGGCACCA
520 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGAGCCCCGACGAAGAAAAATGCGGCACCA
** * * * * *
11605151 ACTTATGCCTGAGCCCAACATGTGCTGCCGTAACCCTCGGTCTGGGCCGATCTTTGGTTAGGAAT
585 ACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGGCCGATCTTTGGTTGGGAAT
*
11605216 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCCCGAAACGAGCGTG
650 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTG
* *
11605281 CGGGTTCTCAACCGACCAAAGGGGCGGGATATGCAAGTCAGGGATCGGTCGGGTCCCCCTCAGCG
715 CGGGTTCTCAACCGGCCAAAGGGGCGGGATACGCAAGTCAGGGATCGGTCGGGTCCCCCTCAGCG
* ** * *
11605346 TGCTGCCATTTTTGCTGCCGCAACCCTCGGT-CGGTCCAATCTTAGACTGGGAATGAACTTCGTA
780 TGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
*
11605410 TGCCTAAGCCAACCAACGAAATGAGCGGTCGGGCGGGCACTACGTCGACCAG
845 TGCCTAAGCCAACCGACGAAATGAGCGGTCGGGCGGGCACTACGTCGACCAG
* * * * *
11605462 AGAGACGGGACGCGCAAACCATGGATCAATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
11605527 TCTACATGCCAATGCCATTTTTATGGCTTGTAAA-TAATACAATGGT-CCTTAAGCCTTCACGTG
66 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* *
11605590 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTACGGTTTGGG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGG
* *
11605655 ATTTTTTAAAATTTTTTCGGAAGTTGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTT
196 ATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
*
11605720 TGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAA
261 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
11605785 AAAAGTATCCCCATTTCAAACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCT
326 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
11605850 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
391 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * * *
11605915 CAGCACCCATCGCACATCATGTGCACACACCACCCCCAG-CCCC-CGATTGTCGGAACCCCAATG
456 CAGCACCCATCGCACATCATGTGCGCACACC-CCCTCGGCCCCCACGATCGTCGGAGCGCCAATG
* * * * *
11605978 CCGCTGGTCAGGTTCT-C--CG--G-T------ATGGTG-CCCTAGTGAAGAAAAATACGGCACC
520 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGAGCCCCGA-CGAAGAAAAATGCGGCACC
* * * *
11606030 AGCACATGCTCGAGCCCAGCATGTGCTGCCCCAACCCTCAGT-----CC-A-----------G--
584 AACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGGCCGATCTTTGGTTGGGAA
* * * *
11606076 T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTAT-GCTTAAGTCAACCTATGAAATGGGCG
649 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGC-TAAGTCAACCCACGAAACGAGCG
** * * * * * * * *
11606133 TGCGGGCGCTCAACCGGCTAGAGGGGTGGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCTTCTG
713 TGCGGGTTCTCAACCGGCCAAAGGGGCGGGATACGCAAGTCAGGGATCGGTCGGGTCCCCCTCAG
* * * * * * *
11606198 TGTGCTGTCGATCCTGCTGCCACAACCTTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCG
778 CGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
*
11606263 TATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCAGACGGGCACTACGTCGACCAG
843 TATGCCTAAGCCAACCGACGAAATGAGCGGTC-GG--G-CGGGCACTACGTCGACCAG
* *
11606321 AGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
11606386 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTG
66 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* ** * *
11606451 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTTGGG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGG
* * * *
11606516 ATTTTTTAAAATATTTTCGAAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
196 ATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * *
11606581 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTGGAA
261 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
11606646 AAAAGTGTGCCCATTTCAGACACTTTAATGGCTCCTGGCAGCAAACCTGTAAAATATCAAATGCT
326 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * * *
11606711 CTTTAAGGGGGTGTAAGTTCTCAAGTTTTGATGAGGG-TAGGGGGCCCATATAAGGGCCAAGTAC
391 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
11606775 CAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGAT
456 CAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCACGAT
11606822 TGTGACAATT
Statistics
Matches: 4468, Mismatches: 424, Indels: 128
0.89 0.08 0.03
Matches are distributed among these distances:
853 2 0.00
854 121 0.03
855 61 0.01
856 3 0.00
858 5 0.00
859 116 0.03
860 70 0.02
861 291 0.07
863 1 0.00
874 1 0.00
875 2 0.00
879 4 0.00
880 55 0.01
886 28 0.01
887 19 0.00
889 4 0.00
891 1 0.00
892 29 0.01
893 602 0.13
894 425 0.10
895 1346 0.30
896 515 0.12
897 10 0.00
898 457 0.10
899 2 0.00
900 2 0.00
901 2 0.00
902 8 0.00
903 5 0.00
904 1 0.00
905 1 0.00
906 207 0.05
907 3 0.00
909 32 0.01
910 37 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGG
ATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCACGATCGTCGGAGCGCCAATGC
CGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGAGCCCCGACGAAGAAAAATGCGGCACCAA
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGGCCGATCTTTGGTTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTGC
GGGTTCTCAACCGGCCAAAGGGGCGGGATACGCAAGTCAGGGATCGGTCGGGTCCCCCTCAGCGT
GCTGCCAATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAATGAGCGGTCGGGCGGGCACTACGTCGACCAG
Found at i:11606969 original size:190 final size:190
Alignment explanation
Indices: 11606634--11607011 Score: 596
Period size: 190 Copynumber: 2.0 Consensus size: 190
11606624 CAAGATTTTC
* * * * *
11606634 TGACCATTGGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTCCTGGCAGCAAACCTGTAAA
1 TGACAATTGGAAAAAAGTGTCCCCATTTCAAACACTGTAATGGCTACTGGCAGCAAACCTGTAAA
* * * *
11606699 ATATCAAATGCTCTTTAAGGGGGTGTAAGTTCTCAAGTTTTGATGAGGGTAGGGGGCCCATATAA
66 ATATAAAATGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGTAAGGGGCCAATATAA
* * *
11606764 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATTG
131 CGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATTG
*
11606824 TGACAATTTGAAAAAAGTGTCCCCATTTCAAACACTGTAATGGCTACTGGCAGC-AACCTGTAAA
1 TGACAATTGGAAAAAAGTGTCCCCATTTCAAACACTGTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
11606888 ATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATA
66 ATATAAAATGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGG-TAAGGGGCCAATATA
11606953 ACGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGAT
130 ACGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGAT
11607012 CGTCGGAACC
Statistics
Matches: 171, Mismatches: 16, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
189 54 0.32
190 117 0.68
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (190 bp):
TGACAATTGGAAAAAAGTGTCCCCATTTCAAACACTGTAATGGCTACTGGCAGCAAACCTGTAAA
ATATAAAATGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGTAAGGGGCCAATATAA
CGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATTG
Found at i:11610899 original size:889 final size:887
Alignment explanation
Indices: 11609631--11613918 Score: 5480
Period size: 889 Copynumber: 4.9 Consensus size: 887
11609621 CCGGTCTAAT
*
11609631 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCGACCCAC-AGAACGAGCGTGCTGGCGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGA-AACGAGCGTGCTGGCGCTCAA
* *
11609695 TCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAACCGAGTCCCCTTCTACGTGCAGCCGATC
65 TCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCAGCCGAGTCCCCCTCTACGTGCAGCCGATC
*
11609760 TTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCA
129 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCA
*
11609825 ACCGACAAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
194 ACCGACGAAACGAGC-GGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
11609890 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCGGCATATCATCATATTTCTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCC
*
11609955 ATTTTTATGGCTTGTAAATTCATACAATGGTACATTAAGCCTCCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCACGTGAAGTTTCATGGCAAGA
* * *
11610020 CGAATCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTGTGGTTCGACATTTTTTAAAATTTTT
388 CGACTCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTT
*
11610085 TCGGAAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAGA
453 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAGA
* * * *
11610150 AAAATTCAGCTAGAAACTCGATGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATGT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
11610215 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
11610280 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
648 GTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
* *
11610345 TCTTGTGCGCA-ACCCACTCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGATCAGGTTCTC
713 TCATGTGCGCACACCC-CTCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTC
* * *
11610409 CGGCGATGCTCCAGCAAAGAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCAC
777 CGGCGATGCTCCAGCGAAGAAAAATACGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCAC
* *
11610474 AACCCTCGTTCCGGTCTGATCTTAGATTGGGAATGAACTCTGTAAG
842 AACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTAAG
* *
11610520 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGGAATGAGCGTGCTGGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCTGGCGCTCAAT
* * * *
11610585 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAACCGAGTCCCCCTCCACGTGCAACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCAGCCGAGTCCCCCTCTACGTGCAGCCGATCC
* *
11610650 TGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCAAAGCCAA
130 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAA
* *
11610715 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGTCGACTAGAGAGACGGGATGCGCAA
195 CCGACGAAACGAGC-GGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
11610780 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCA
*
11610845 TTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCATGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCACGTGAAGTTTCATGGCAAGAC
* * *
11610910 GACTCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTGTGGTTCAACATTTTTTAAAATTTTTT
389 GACTCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTT
*
11610975 CGGAAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAA
454 CGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAA
* * *
11611040 AAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATGTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
11611105 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
11611170 TTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT
649 TTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT
*
11611235 CTTGTGCGCACACCCACTCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCC
714 CATGTGCGCACACCC-CTCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCC
* * *
11611300 GGCGATGCTCAAGCGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGTATGTGCTGCCACA
778 GGCGATGCTCCAGCGAAGAAAAATACGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCACA
* * * *
11611365 ACCCTTGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATG
843 ACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTAAG
* *
11611410 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCTACGAAACGAGCGTGCGGGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCTGGCGCTCAAT
* *
11611475 CGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCAGTCGAGTCCCCCTCTACGTGCAGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCAGCCGAGTCCCCCTCTACGTGCAGCCGATCC
*
11611540 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCAAAGCCAA
130 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAA
* * *
11611605 CCGACGAAACGAGCAGGCAGGCGGGCAGACGGGCACTACGCCGGCCAGAGAGACGGGGATGCGCA
195 CCGACGAAACGAGC-GGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGAC-GGGATGCGCA
*
11611670 AGCCGTGGATCGATAGGGTGGTAGGTGGGGTTAGGCATATCTTCATATTTCTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCC
11611735 ATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCACGTGAAGTTTCATGGCAAGA
*
11611800 CAACTCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTT
388 CGACTCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTT
11611865 TC------------GG------A------AGACGTGATCCTTGTATTTTTGTTGGCATGCACAGA
453 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAGA
11611906 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
11611971 GAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
11612036 GTTCTCAAGGTTTGATGAAGGTTATGGGGCAAATATAAGGGCCAAGTACCAGCACCTATTGCACA
648 GTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
* * * * *
11612101 TCATGTGCGCAGACCCCCCCGGCCCCCCCGATCGTCGGAACCCCATTACC-GCTGGTCAGGTTCT
713 TCATGTGCGCACA-CCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCATC-GGTCAGGTTCT
* ** * *
11612165 CCGGTGATGCTTCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAACACATTCCAGAGCCC
776 CCGGCGATGC-TC--C-A----G---C---GAAGAAAAATACGGCACCAACACATGCCTGAGCCC
* * * * *
11612230 AGCATGTGCTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTAGGAATGAACTCCGTATAG
827 AGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTA-AG
* * * **
11612292 -TTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCTAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCTGGCGCTCAAT
* * * * *
11612356 CGGCCTGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCCTCTACGTGCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCAGCCGAGT-CCCCCTCTACGTGCAGCCGATC
* * * * * * *
11612421 CTACTACCGCAACCCT-TGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
129 CTGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCC
* * * * * * * * *
11612485 AATCGACAAAACGAGCGG-A--CGGGCAGGCTGGTACTATGCCAGCCAGAGAGACGGGATGCACA
193 AACCGACGAAACGAGCGGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * *
11612547 AGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCATGTCTTCATATTTCTACGTGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCC
* *
11612612 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCACGTGAAGTTTCATGGCAAGA
* ** * *
11612677 CGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAACTTTT
388 CGACTCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTT
* * *
11612742 TCGGAAAGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAA
453 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAGA
11612806 AAAATTCA--TGAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
11612869 TCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* **
11612934 AGTTCTCAAGGTTTGATCG-GGGATAGGGGGCCAATAGGAGGGCCAAGTACCAGCACCCATTGCA
647 AGTTCTCAAGGTTTGAT-GAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCA
* * ** **
11612998 CATCATGTGTGCACACCCCTGGCGATGCTCCAGCGAT-G-AAGAA----AA----AT-GG---GG
711 CATCATGTGCGCACACCCCT--CG--GCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGG
* * * ** * ** * * ** *
11613049 --CACCAGCACATGC-CCGAGCCCAG-CATGTGCTGC-CGCAAC-CATCGGTTTG-GTCC-G-AT
772 TTCTCCGGC-GATGCTCC-AGCGAAGAAAAATACGGCAC-CAACACAT--GCCTGAGCCCAGCAT
* ** **
11613105 CTTAGACTG--GGAA---T--GAAC--TCTGTATGCTTAGATT--G--TGAA-T--G-AA-
832 -GT-G-CTGCCACAACCCTCGGTCCGGTCTG-AT-CTTAGATTGGGAATGAACTCCGTAAG
* * * * * * *
11613148 ------C------T----T-CGTATGCCTAAGTCAACTCACAAAACGAGCGGGCGGGCCCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCTGGCGCTCAAT
* * * * * * * * * * *
11613196 CGACCAGAAGGGCAGGATGCGTAAGCCGAGGATCGGTCGGGTCACCCTCTGCATGCTA-CCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCAGCCGAGTCCCCCTCTACGTGC-AGCCGATC
* * * * *
11613260 CTACTACCGCAA-CCTC-GATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCC
* * * * * *
11613323 AACCGACGAAACAAGACGGCGGGCGGACGGGTGGGCACTACATCGGCCAGAGAAACGGGATGCGC
193 AACCGACGAAACGAG-CGGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * **
11613388 AACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGC
* *
11613453 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCACGTGAAGTTTCATGGCAAG
* * * * ** * * * *
11613518 ATGACTCGTTTTCTATTTTGCACGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAAATTT
387 ACGACTCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTT
* * * * *
11613583 TT-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCCCAA
452 TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAG
* * * *
11613647 AAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAATAAGGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
11613712 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
11613777 AGTTCTCAAGGTTTGATGAGGGAT-AGCGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGGA
647 AGTTCTCAAGGTTTGATGAGGGATAAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCA
* * * * *
11613841 CATCATGTGCGCACACCCCCCCGACCCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
711 CATCATGTGCGCACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCT
*
11613906 CCGGTGATGCTCC
776 CCGGCGATGCTCC
11613919 GGTGATAGTG
Statistics
Matches: 3045, Mismatches: 262, Indels: 218
0.86 0.07 0.06
Matches are distributed among these distances:
838 59 0.02
839 38 0.01
840 72 0.02
841 59 0.02
842 227 0.07
843 184 0.06
844 1 0.00
845 3 0.00
849 1 0.00
850 2 0.00
851 1 0.00
853 2 0.00
854 4 0.00
855 6 0.00
857 1 0.00
858 1 0.00
859 1 0.00
861 1 0.00
862 4 0.00
864 4 0.00
865 2 0.00
866 9 0.00
867 281 0.09
868 6 0.00
870 2 0.00
871 10 0.00
872 13 0.00
873 7 0.00
875 1 0.00
876 1 0.00
877 193 0.06
878 29 0.01
879 3 0.00
880 1 0.00
881 177 0.06
882 89 0.03
883 3 0.00
885 1 0.00
886 4 0.00
887 4 0.00
888 2 0.00
889 706 0.23
890 383 0.13
891 203 0.07
895 1 0.00
896 1 0.00
898 5 0.00
899 181 0.06
900 16 0.01
901 32 0.01
902 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCTGGCGCTCAAT
CGGCCAGAGGGGCGGGATGCGCAAGCGGGGATCAGCCGAGTCCCCCTCTACGTGCAGCCGATCCT
GCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAAC
CGACGAAACGAGCGGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCG
GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
TGTGCGCACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGC
GATGCTCCAGCGAAGAAAAATACGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCACAACC
CTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTAAG
Found at i:11611413 original size:26 final size:26
Alignment explanation
Indices: 11611384--11611436 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11611374 CCAGTCCGAT
*
11611384 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11611410 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11611436 C
1 C
11611437 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11612303 original size:26 final size:26
Alignment explanation
Indices: 11612266--11612315 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11612256 TGGTTTGATC
11612266 TTAGACTAGGAATGAACTCCGTATAG
1 TTAGACTAGGAATGAACTCCGTATAG
* *
11612292 TTAGACTGGGAATTAACTCCGTAT
1 TTAGACTAGGAATGAACTCCGTAT
11612316 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATAG
Found at i:11612732 original size:867 final size:856
Alignment explanation
Indices: 11610114--11613917 Score: 3841
Period size: 890 Copynumber: 4.4 Consensus size: 856
11610104 CAAACTTGGT
* *
11610114 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAGAAACTCGATGTGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
11610179 AGATTTTGTGACCATTTGAGAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAA
66 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAA
*
11610244 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG
131 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGG
*
11610309 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCTTGTGCGCA-ACCCACTCGGCCCCCCC
196 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCACTCGGCCCCCCC
* *
11610373 GATCGTCGGAACCCCAATGCCATCGATCAGGTTCTCCGGCGATGCTC-CAGCAAAGAAAAATACG
261 GATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCACAGCGAAGAAAAATACG
* *
11610437 GCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCACAACCCTCGTTCCGGTCTGATCTTAGATT
326 GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGATT
* * *
11610502 GGGAATGAACTCTGTA-AGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGGAAT
391 GGGAATGAACTCCGTATAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAAC
*
11610566 GAGCGTGCTGGCGCTCAATCGGCCAGAGGGGCGGGATGCGCAAG-TCGGGGATCAACCGAGTCCC
456 GAGCGTGCTGGCGCTCAATCGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCAGCCGAGTCCC
* * * *
11610630 CCTCCACGTGCAACTGATCCTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGA
520 CCTCTACGTGCAGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGA
* * *
11610695 ACTCTGTATGCCAAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGTCGAC
585 ACTCTGTATGCCAAAGCCAACCGACGAAACGAGCAGGCA-GCGGGCAGGCGGGCACTACGCCG-C
*
11610760 TAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCAT
648 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCAT
*
11610825 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCAT
713 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCAC
*
11610890 GTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTGTGGTTC
778 GTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTC---A---T---GA--TTTT-T-G---
* ** *
11610955 AACATTTTTTAAAATTTTTTCGGAAGGATTTTTGGTCCCAAACTTGGT
827 AA-ACTTTTT---A-TGGTTC-G-A-GATTTTT--T------C--GGA
*
11611003 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAGAAACTCGAAGTGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
11611068 AGATTTTGTGACCATTTGAGAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAA
66 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAA
11611133 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGG
131 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGG
*
11611198 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCTTGTGCGCACACCCACTCGGCCCCCCC
196 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCACTCGGCCCCCCC
11611263 GATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCA-AGCGAAGAAAAATACG
261 GATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCACAGCGAAGAAAAATACG
* * * *
11611327 GCACCAGCACATGCCTGAGCCCAGTATGTGCTGCCACAACCCTTGGTCCAGTCCGATCTTAGATT
326 GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGATT
*
11611392 GGGAATGAACTCCGTAT-GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCTACGAAAC
391 GGGAATGAACTCCGTATAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAAC
* * *
11611456 GAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCAGTCGAGTCCCC
456 GAGCGTGCTGGCGCTCAATCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCAGCCGAGTCCCC
11611521 CTCTACGTGCAGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
521 CTCTACGTGCAGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
*
11611586 CTCTGTATGCCAAAGCCAACCGACGAAACGAGCAGGCAGGCGGGCAGACGGGCACTACGCCGGCC
586 CTCTGTATGCCAAAGCCAACCGACGAAACGAGCAGGCA-GCGGGCAGGCGGGCACTACGCC-GCC
*
11611651 AGAGAGACGGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGGTTAGGCATATCTTCAT
649 AGAGAGAC-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCAT
11611716 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCAC
713 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCAC
* * **
11611781 GTGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTATGGTTC
778 GTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTATGGTTC
11611846 GAGATTTTTTAAAATTTTTTCGGA
843 GAG----------ATTTTTTCGGA
11611870 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACTCGAAGTGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
11611935 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAA
66 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
11612000 CCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAAGGTTATGGGG
131 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGG
* * * * *
11612065 CAAATATAAGGGCCAAGTACCAGCACCTATTGCACATCATGTGCGCAGACCCCCCCGGCCCCCCC
196 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCACTCGGCCCCCCC
* * * *
11612130 GATCGTCGGAACCCCATTACC-GCTGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCCGG
261 GATCGTCGGAACCCCAATGCCATC-GGTCAGGTTCTCCGGCGATGC-TC-AC-A----G---C--
** * * * * *
11612194 TGAAGAAAAATGTGGCACCAACACATTCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
313 -GAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGG
* * * *
11612259 TTTGATCTTAGACTAGGAATGAACTCCGTATAG-TTAGACTGGGAATTAACTCCGTATGCCTAAG
377 TCTGATCTTAGATTGGGAATGAACTCCGTATAGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * ** *
11612323 TCAACCCACGAAACGAGCGTGCTAGCGCTCAGCCGGCCTGAGGGGCGGGATGCGCAAGCTGGGGA
442 TCGACCCACGAAACGAGCGTGCTGGCGCTCAATCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGA
* * * * * * * * *
11612388 TCGGCCGGGTCCCCCCTCTACGTGCTGCCAATCCTACTACCGCAACCCT-TGATCCGATCCGATC
507 TCAGCCGAGT-CCCCCTCTACGTGCAGCCGATCCTGCTGCCGCAACCCTCAG-TCCGGTCTGATC
** * * * *
11612452 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGACAAAACGAGC-GG-A-CGGGCAGGCT
570 TTAGACTGGGAATGAACTCTGTATGCCAAAGCCAACCGACGAAACGAGCAGGCAGCGGGCAGGCG
* * * *
11612514 GGTACTATGCCAGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTT
635 GGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
11612579 AGGCATGTCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
699 AGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTA
*
11612644 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAA
764 CCTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAA
*
11612709 ACTTTTTACGGTTCGAGATTTTTTAAAACTTTTTCGGAAA
829 ACTTTTTATGGTTCGAGA-----T-----TTTTTCGG--A
*
11612749 GATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTC
1 -A------G------AC------G---TGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTC
*
11612813 A--TGAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
44 AGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACA
* *
11612876 CTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTC
108 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* **
11612941 AAGGTTTGATCG-GGGATAGGGGGCCAATAGGAGGGCCAAGTACCAGCACCCATTGCACATCATG
173 AAGGTTTGAT-GAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
* * ** ** *
11613005 TGTGCACACCC-CTGGCGATGCTCCAGCGAT-G-AAGAA----AA----AT-GG---GG--CACC
237 TGCGCACACCCACT--CG--GCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCC
* * ** * ** * * * ** * *
11613053 AGCACATGC-C-CGAGCCCAG-CATGTGCTGC-CGCAAC-CATCGGTTTG-GTCC-G-ATCTTAG
298 GGC-GATGCTCAC-AGCGAAGAAAAATACGGCAC-CAGCACAT--GCCTGAGCCCAGCAT-GT-G
** ** * *
11613110 ACTG--GGAA---T--GAAC--TCTGTATGCTTAGATTGTGAATGAACTTCGTAT-GC-----C-
356 -CTGCCACAACCCTCGGTCCGGTCTG-AT-CTTAGATTGGGAATGAACTCCGTATAGCTTAGACT
* * * * * *
11613159 -----T-AA----G--T--C-AACTC-A--CA--AAACGAGCGGGCGGGCCCTCAGTCGACCAGA
418 GGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCTGGCGCTCAATCGGCCAGA
* * * * * * * * * * * * *
11613204 AGGGCAGGATGCGTAAGCCGAGGATCGGTCGGGTCACCCTCTGCATGCTA-CCGATCCTACTACC
483 GGGGCGGGATGCGCAAGCTGGGGATCAGCCGAGTCCCCCTCTACGTGC-AGCCGATCCTGCTGCC
* * * *
11613268 GCAA-CCTC-GATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
547 GCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCAAAGCCAACCGACG
* * * * * * * * *
11613331 AAACAAG-ACGGCGGGCGGACGGGTGGGCACTACATCGGCCAGAGAAACGGGATGCGCAACCCGT
611 AAACGAGCA-GGC-AGCGGGCAGGCGGGCACTAC-GCCGCCAGAGAGACGGGATGCGCAAGCCGT
* **
11613395 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT
673 GGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
11613460 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
738 ATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * *
11613525 GTTTTCTATTTTGCACGATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAAATTTTTGAAAG
803 GTTTTTTATTTTTCATGATTTTTGAAACTTTTTATGGTTC--G---------AGA---TT-----
*
11613590 GAGTTTTGGCCCCAAACTTGGT
849 ---TTTT---------C--GGA
* * * * *
11613612 AGACGTGATCCTTGTATTTTTTTTGGCATGCCCAAAAAAATTTAGCTAAAAACTCAAAGTGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
11613677 AGATTTTGTGACCATTTGAATAAGGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
66 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAA
11613742 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT-AGCGG
131 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAG-GG
* * * * * *
11613806 GCCAATATAAAGGCCAAGTACCAGCACCCATCGGACATCATGTGCGCACACCC-CCCCGACCCCC
195 GCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCACTCGGCCCCCC
* * *
11613870 CGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTC
260 CGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTC
11613918 CGGTGATAGT
Statistics
Matches: 2530, Mismatches: 240, Indels: 324
0.82 0.08 0.10
Matches are distributed among these distances:
838 59 0.02
839 37 0.01
840 53 0.02
841 29 0.01
842 210 0.08
843 185 0.07
844 4 0.00
845 6 0.00
846 2 0.00
848 1 0.00
849 1 0.00
850 5 0.00
851 4 0.00
853 4 0.00
854 10 0.00
855 6 0.00
856 1 0.00
861 1 0.00
862 1 0.00
863 1 0.00
864 3 0.00
865 5 0.00
866 23 0.01
867 288 0.11
868 4 0.00
869 3 0.00
870 6 0.00
871 11 0.00
872 14 0.01
873 6 0.00
874 6 0.00
875 4 0.00
876 1 0.00
877 190 0.08
878 29 0.01
879 2 0.00
880 6 0.00
881 178 0.07
882 90 0.04
883 3 0.00
885 1 0.00
886 5 0.00
887 4 0.00
888 3 0.00
889 240 0.09
890 382 0.15
891 161 0.06
892 2 0.00
896 1 0.00
898 3 0.00
899 184 0.07
900 16 0.01
901 28 0.01
902 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (856 bp):
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCACTCGGCCCCCCC
GATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCACAGCGAAGAAAAATACG
GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGATT
GGGAATGAACTCCGTATAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAAC
GAGCGTGCTGGCGCTCAATCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCAGCCGAGTCCCC
CTCTACGTGCAGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
CTCTGTATGCCAAAGCCAACCGACGAAACGAGCAGGCAGCGGGCAGGCGGGCACTACGCCGCCAG
AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATT
TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCACGTG
AAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGAG
ATTTTTTCGGA
Found at i:11613144 original size:26 final size:26
Alignment explanation
Indices: 11613105--11613157 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11613095 TTGGTCCGAT
11613105 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
11613131 CTTAGATTGTGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
11613157 C
1 C
11613158 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:11615783 original size:26 final size:26
Alignment explanation
Indices: 11615754--11615806 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11615744 GTTGACTTAG
11615754 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
11615780 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11615806 G
1 G
11615807 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11616681 original size:26 final size:26
Alignment explanation
Indices: 11616652--11616704 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11616642 GTTGACTTAG
11616652 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11616678 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11616704 G
1 G
11616705 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11617591 original size:26 final size:26
Alignment explanation
Indices: 11617555--11617607 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11617545 GTTGACTTAG
*
11617555 GCATACGGAGTTCATTTCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
11617581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
11617607 G
1 G
11617608 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:11618018 original size:903 final size:901
Alignment explanation
Indices: 11614879--11619210 Score: 5926
Period size: 903 Copynumber: 4.8 Consensus size: 901
11614869 TGGGTTGACT
* * * * **
11614879 TAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCT
1 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCACATGCT
** * * * *
11614944 GGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGATCATCGCCAG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
* * * * *
11615009 AGAACCTGACCGGCGGTATTAGGGTTCCGACGA---------TCGAGGGGTGTGCACACATGATG
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCTCGGGGGGTGTGCGCACATGATG
* * *
11615065 TGCGATGGTTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
11615130 AGC-CCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGA
261 A-CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
11615194 ATTGGGGACACTTTTTTTAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTT
325 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** ** * **
11615259 TTGTGCAACCCAAAAAAAATACGCGGATCATGTCTAAAAAGTTTGGGGCCAAAACTCCTTTCGAA
390 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * **
11615324 AAAATTTTCAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
455 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
11615389 CTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
520 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
11615454 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTT
585 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * **
11615519 GCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCGGCCCGCCTGTTTGCTCGTTTCGTC
650 GCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCG-C--CC-GCCCGCCTG-CCGCTCGTTTCGTC
* * ** *** * * * *
11615584 GGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGATTGGACCGAGGGTTGCAGTAG
710 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAAGGTTGCGGCAG
** * * *
11615649 CAAGATCAGCAGCATGCAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGC
775 CAAGATCAGCAGCACACAGAGGGGGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGC
* * * * *
11615714 CAGCTGAGCACCCGCATGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATC
840 GA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
11615777 TAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGA-TCAGACCGAGGGTTGCGGTAGCACATGC
1 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACTGAGGGTTGCGGCAGCACATGC
* * * *
11615841 TGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGAGGCACCATCACCAGAGCATCGTCG
65 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCG
* *
11615906 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGAGG-TCGGGGGGTGTGCACACATGA
130 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCTCGGGGGGTGTGCGCACATGA
* * *
11615970 TGTGTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAAC
194 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
11616035 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT
259 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
11616100 AAATGAGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
324 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
11616165 TTTGTGCATACAAAAAAAAATAGAAGGATCACGTCTACC-AGCTTTGGGGCCAAAACTCCTTTCG
389 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTTCG
* *
11616229 AAAAAATTATAAAAAATCCCGAACCGTAAAAA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTC
453 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * *
11616293 GTCTTGCCATGAATCTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTATAACCCATAAAAA
518 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
11616358 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGC
583 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * ** * *
11616423 TTGCGCATCCAGTCTCTCTGGCTGGCATAGTGCCCGCTGGTCCG-CT--CGCTCGTTTCGTCGAT
648 TTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCTGCCGCTCGTTTCGTCGGT
* *
11616485 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACC-AAGTGTTGCGGTAGCA
713 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAAG-GTTGCGGCAGCA
* * * * * * *
11616549 GGATCAGCAGGACACAGAGAGGGACCCGATCGATCCTCGGCTTGTGCATCTCGCTCCTCTGGCAG
777 AGATCAGCAGCACACAGAGGGGGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGC-G
** *
11616614 GTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
841 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
11616675 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGGGGCAGAAAATGCT
1 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCACATGCT
* * * * *
11616740 GGGCTCGGGCATATGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCGCCGAAGCATCGTCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
* * * *
11616805 AGAACCTGACCGACGGCATTGGGGTTCCAACGATCAGGGGGGC-CGGGTGATGTGTGTGCACACG
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCTCGGG-G-GGTGTGCGCACATG
*
11616869 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAG
193 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
11616934 CTCACACCCCCTTAAAGAGCATTTGAAATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCT
258 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
11616999 GAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT
323 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* ** *
11617063 TTTTGTGCATGCCAACAAAAATACAACAATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCA
388 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
*
11617127 AAAAATATTTTAAAAAAACCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
453 AAAAA-ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
11617192 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTTTGAATTTACAAGCCATAAAA
517 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
11617257 ATGGCATTGGCATGTAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGG
582 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
11617322 CTTGCGCATCCCGTCTCTCTGGCTGACATAGTGCCTGCCCGCCCGCCTGCCCTCTCATTTCGTCG
647 CTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCTG-CCGCTCGTTTCGTCG
* * *
11617387 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCAAAGGTTACGGCAGC
711 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAAGGTTGCGGCAGC
* * * * ** * * *
11617452 AGGATCGGCAGCACATAGAGGGAGACCCGGCCGATCCCCGACTTGCGCATGCCGCCCCTTTGGCT
776 AAGATCAGCAGCACACAGAGGGGGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGC-
* *
11617517 GACTGAGCGCCCGCACGCTCGTTT-GTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTA
840 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
11617578 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGACAGCACATGCT
1 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCACATGCT
* * * *
11617643 TGGCTCGGGCATGTGCTGCTGCCGCATTTTTCTTCGCCGGTGCACCATCGCCGGAGCATCGTCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
* * * *
11617708 AGAACCTGACCGATGGCATTGGGGTTCCGGCGATTGGGGGGCTGGGGGGTGTGTGCGCACATGAT
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCTCGGGGG-GTGTGCGCACATGAT
* * * *
11617773 GTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCTAGAACT
195 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
11617838 CACTCCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAA
260 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
11617903 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTT
325 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
11617968 TTGTTCATGCCAAGAAAAATGA-AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
390 TTGTGCATGCCAAAAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* * * ** *
11618032 AAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATTATGAATAATAGAAAACGAGTCG
454 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
11618097 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTAACAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** ** * *
11618162 GGTGTTGGCACACTA-AAATATGAAGATGTGCCTAAACCCA-CTACCACCTTATCGATTCACGGC
584 GGCATTGGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * *
11618225 TTGCGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCTCGCCCACCCGCCCGATCGTTTTGTCGG
648 TTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCTG-CCGCTCGTTTCGTCGG
* * *
11618290 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGAACCAAACCAAGGGTTGCGGCAGCA
712 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAAGGTTGCGGCAGCA
* *
11618355 AGATC-GACAGCACACAGAGGGGGACCCGATCGATCCCC-AGCTTATGCATCCCGCCCCTCTAGC
777 AGATCAG-CAGCACACAGAGGGGGACCCGATCGATCCCCGA-CTTGTGCATCCCGCCCCTCT-GG
* * * * *
11618418 CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTC
839 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ** *
11618481 TAAGCATATGGAGTTCATTCCCGGTCTAAGATCGGACCAGA-TCG-GGAGTTGCGGCAGCAGATG
1 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACT-GAGG-GTTGCGGCAGCACATG
** * * * * * **
11618544 CTGGGCTCAAGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCGCCATCGTCGAAGCATCACC
64 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC
11618609 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-TCGGGGGGTGTGCGCACATGA
129 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCTCGGGGGGTGTGCGCACATGA
*
11618673 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
194 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
11618738 TCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTG
259 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
11618803 AAATGGGGACAC-TTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
324 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
11618867 TTTGTGCCA-GCC-AACAAAATACAAGGATCACTTCTACCAAGTTTTGGGCCAAAACTCCATCCG
389 TTTGTG-CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* *
11618930 AAAAAATTTTAAAAAATCCCAAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
453 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
11618995 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
518 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
11619060 TGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
583 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
11619125 TTGTGCATCCCGTCTCTC-GAGCTGGCGTAGTGCCCGCCCGCCTGCCCGACCGCTC-ATGCTGTC
648 TTGCGCATCCCGTCTCTCTG-GCTGGCGTAGTGCCCGCCCGCCCGCCTG-CCGCTCGTTTC-GTC
11619188 GGTTGGCTTAGGCATACAGAGTT
710 GGTTGGCTTAGGCATACAGAGTT
11619211 GATTAACTGT
Statistics
Matches: 3041, Mismatches: 348, Indels: 88
0.87 0.10 0.03
Matches are distributed among these distances:
897 2 0.00
898 480 0.16
899 283 0.09
900 532 0.17
901 153 0.05
902 413 0.14
903 565 0.19
904 148 0.05
905 4 0.00
906 185 0.06
907 276 0.09
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCTCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCTGCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAAGGTTGCGGCAGCAAGAT
CAGCAGCACACAGAGGGGGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCGACTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
Found at i:11618488 original size:26 final size:26
Alignment explanation
Indices: 11618458--11618510 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11618448 GTTGACTTAG
*
11618458 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
11618484 GCATATGGAGTTCATTCCCGGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11618510 G
1 G
11618511 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11621929 original size:26 final size:26
Alignment explanation
Indices: 11621878--11621929 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11621868 GTTAACTTAG
* *
11621878 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
11621904 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
11621930 AATTAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:11622814 original size:26 final size:26
Alignment explanation
Indices: 11622785--11622837 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11622775 GTTGACTTAG
*
11622785 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGACTAA
*
11622811 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACAGAGTTCATTCCCAGACTAA
11622837 G
1 G
11622838 ACCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:11623699 original size:26 final size:26
Alignment explanation
Indices: 11623670--11623721 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11623660 ATGACTTAGT
*
11623670 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
* *
11623696 CATACAGATTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
11623722 ATCGGATCCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:11624610 original size:26 final size:26
Alignment explanation
Indices: 11624574--11624626 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11624564 GTTGACTTAG
* *
11624574 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
11624600 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
11624626 G
1 G
11624627 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:11626311 original size:882 final size:880
Alignment explanation
Indices: 11620782--11628948 Score: 9204
Period size: 882 Copynumber: 9.2 Consensus size: 880
11620772 NNNNNNCCTT
* * * ** * * * *
11620782 TCGATCCATGGCTTGCGTATCTCGTCTCTCTGGCCGGTGTAGAGCCCGCCTGCCCGCCTGCCTGC
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGC
* * * * * * *
11620847 TCGTTTTGTTGGTTGGCTTAGGCATATGGAGTTCATTCCCAATGTAAGATCGGATCGGACCGAGG
66 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * * *
11620912 GTT------GC---AT---CAGCACGCAGAGGGGCA-CCGGCCGATCCTCTGCTTGCGCATCTCG
131 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG
* * * * *
11620964 CCCTTCTGGCTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTCACTTAGGCATACAGAGTTCAT
196 CCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * **
11621029 TCCCAGTCTAAG-ATCG-GATCGGACCGAGGGGTGCGGCATTACATGCTGGGCTCGGGCATGTGT
261 TCCCAGTCTAAGTATCGAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGT
* * * ** * **
11621092 TGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGTCGGAGAACTTGACCTCCGG
326 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGG
* * * * *
11621157 CATTGGGGTTCCGGCGAATC-AGGGGGTCGGGGGGAGGGGTGTGCACAGATAATGTGAGAT-GGT
391 CATTGGGGTTCCGACG-ATCGAGGGGGTC---GGG-GGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
11621220 GCTGGTATTTGGCCCTTATATTGGCCCCATATCCCTTATCAAACCTTGAGAACTCACACCCCCTT
451 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
11621285 ACAAGTA--ATTTGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATGGGGAC
516 A-AAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
11621348 AATTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATG
579 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
11621413 CAAACAAAAATAAAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTT
644 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * ** *
11621478 AAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATT
709 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
11621543 AAACTTCACGTGAAGGCTTAAGGGATCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCA
774 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
11621608 TGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTA
839 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * * *
11621650 TCGATCCACGGCTTTCGTATCCCGTTTTTCTGGTCGGCATAGT----GTCCGCCCACCCACCCGC
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGC
** * * ** * *
11621711 TCGTTTTATTGGTTGGCTTAGGGATATAGAGTTCATTCCCAGTCTAAGATC-GACCAGACCAAGG
66 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* *
11621775 ATT------GC-GG-T----AGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCG
131 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG
* * * *
11621828 CCCCT-TTGCTCGGTTGAGCTCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCA
196 CCCCTCTGGC-CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
11621892 TTCCTAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAAATTAGACCAGACCGAGGGTTGCGACA
260 TTCCCAG--T---C-TA---AG-T-A-T--C-G---------AGACCGGACCGAGGGTTGCGGCA
* * *
11621957 GCACATGCTGGGCTCTGGCATGTGTTGGTGCCAC-TTATTTCTTCGTCGGGGCACCATCGCCGGA
301 GCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATT-TTTCTTCGTCGGGGCACCATCGTCGGA
** * * * * *
11622021 TTATCATCGGAGAACTTGACCGGCGGAATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGAGGGG
365 GCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTC---GGG-GGGG
* *
11622085 TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCTTATCCCTCATC
426 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
11622149 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCC
491 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
11622214 ACTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
556 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
11622279 TTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
621 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
11622343 AAAATCCTTCTGAAAAAATTTTAGAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAAT
686 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
11622408 AAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTAC
751 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* ** *
11622473 AAGCCATAAAAATGGCATTGGGACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTA
816 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* ***
11622538 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGATGTAGTGCCCGCCCGCCCGCCCGCCCGC
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCG-
** * * *
11622603 CCTCTGTTTCGTCGGTTGGCTTAGGCATATAGAGATCATTCCCAGTCTAAGATC-GAACCAGACT
65 -CTC-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACC
* * * ** * **
11622667 GAGGGTTGTGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCTAAT
127 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * * * * *
11622732 CTCGCCCTTC-GGCCAGCTGAGCACCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
192 CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
*
11622796 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGACTAAGACCAGATCGGATCGAGGGTTGCG
257 TCATTCCCAG--T---C-TA---AG-T-A-T--C-G----AGA-C----CGGACCGAGGGTTGCG
* * * *
11622861 GCAGCACATGCGGGGCTTGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGAGCACCATCGTCG
298 GCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* * * *
11622926 GACCATCGCCGGAGAACTTGACTGACGG-A------TT--GAC---C--------C-GGGGGGTG
363 GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTG
* *
11622970 TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTGAG-CCCAT-TCCCTCATC
428 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TTG-GCCCCCTATCCCTCATC
* *
11623033 AAACCTCAAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
491 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
11623098 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTT
556 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
11623163 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTCTGGGGCC
621 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT-TGGGGCC
** * * * *
11623228 AAAACTCCAGCCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAGGTTTCAAAAATCATGAAAAA
685 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* *
11623293 TAAAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
750 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * **
11623358 CAAGCAATACAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
815 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
11623423 A
880 A
* * * * * ** *
11623424 TCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCTGCCCGTTCAC
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGC
* * *
11623489 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTGCCAGTCTATGATCAGACCGGACTGAGG
66 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* ** **** * * *
11623554 GTTGCGGCAGCAGGATCGACAGCACATAGAGGGGGATGTAGCCTATCCCCGGCTTACGCATCCCA
131 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG
* * *
11623619 CCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGATGACTTAGTCATACGGAGTTCAT
196 CCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * **
11623684 TCCCAGTCTAAGCATACAGATTTCATTCCTAGTCTAAGATCGGATCCGACCGAGGGTTGAGATAG
261 TCCCAG--T---C-TA-AG---T-A-T-C--G----AGA-C----CGGACCGAGGGTTGCGGCAG
* *
11623749 CACATGCTAGGCTTGGGCATGTGTTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGTCGGAG
302 CACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAG
* * * * *
11623813 CATCACCGTAGAACCTAACCGATGGCATTGGGGTTCC-AGCGATAGAGGGGGCTAGGGCGGGGGT
366 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGAGGGGG-T-CGG-GGGGGT
* ** *
11623877 GTGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCTGTATCCATCATCA
427 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
11623942 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
492 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
11624007 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACGCTTCGACTTTT
557 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * ** *
11624072 TAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTAAACCAAGTTTGGGGGCAA
622 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
11624137 AAGTCCTTCCGAAAAAATTTTAAAAAATCCCCAACCGCAAAAAGTTTTAAAAATCGTGAAAAATA
687 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
*
11624202 GAAAACGAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
752 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* ** *
11624267 AGCCATATAAATGGCATTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTA
817 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * ** * ***
11624331 TCGATCCATGGCTTGAGCATCCCGTCTCTCTAGACAACATTGTGCCC-CCCGCCTATCCGCCCGC
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGC
* ** * ** * * *
11624395 TTGTTTAATCGGTTGGCTCAGGCATATAGAGATCATTCCC-GATCTAAGATCAGACTGGACTGAG
66 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCGGACCGAG
* * * * ** * * * * * *
11624459 GGTT-CTGACAGCAGGATTGGCAGCATGCAAAAAGGGA-TCGACTGATCCTCGACTTGCACATCC
130 GGTTGC-GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC
* * * *
11624522 CGCCCCTCTGGCCGGCTGAGCACCCACACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTG
194 CGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
11624587 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCGGATCGGACCGAGGGTTACGGC
259 ATTCCCAG--T---C-TA---AG-T-A-T--C-G----AGA-C----CGGACCGAGGGTTGCGGC
* * **
11624652 AGCACATGTTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGA
300 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * * *
11624717 GCATCGCCTGAGACCCTGACCGACGGCATTGGGGTTCCGATGATCGAGGGGGTCAGGGGGGTGTG
365 GCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTGTG
* * *
11624782 CGCAAATGGTGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
430 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
11624847 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTA
495 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
11624912 AAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
560 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *** *
11624976 CTGAATTTTTCTGTGCATGCCAACAAAAATACAAGGATTGTGTCTACCAAGTTTGGGGCCAAAAA
625 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * * * *
11625041 TCCTTTCGAAACAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATTGTGAAACATAAAA
690 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * * *
11625106 AATGAGTTGTCTTGCCATGAAACTTAACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGC
755 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
11625171 CAGAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTA
820 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* ** * *
11625232 TCGATCCATGGCTTGAACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCAGCCCGCCTGC
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG-C--CC-GCCCGCCCGC
* * * * *
11625297 CCGTTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGACTGGACA
62 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * * * * * *
11625362 GAGGGCTACGGTAGCAGGATTGGCAGCATGCAGAGGGGGACTCGACCGATCCCCGGCTTGTGCAT
127 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * * * *
11625427 CCCGCCCCTCTGGCCGGCTGAGCGCCTGCATGCTCGTTTTGTGGGTTGACTTAGGCGTACGGAGT
192 CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
11625492 TAATTCCCAG-CGTAAG-ATC-AGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGTA
257 TCATTCCCAGTC-TAAGTATCGAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
11625554 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGATC
321 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* *
11625619 GGCGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTGTGCGCACAAGATGTGCGATGGGT
386 GACGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
11625684 GCTGGTAGTTGGCCCTTATAATGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTT
451 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
11625749 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACAC
516 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
11625814 TTTTTTCAAATGGTCACAAAATTTTCTACACTTCGCGTTTTTTGCTGAATTTTTTTGTGCATGCC
581 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* ** *
11625879 AAAAAAAATACAAGGATCTTGTCTACCAAGTTTGGGGCCAGAACTCCTTCCGAAAAAATTTTAAA
646 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
11625944 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
711 AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * **
11626009 ACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGAAATG
776 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
11626074 CAGAAATAAGAAGGTGTGCCTAAACCCACCTACCACCCTA
841 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * * * *
11626114 TCAATCCATGGCTTGCGCATACCGTCTCTTTGGTCGGCATAGTGCCCGTCTGTCTGCCCACTCGT
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG-C---CCGCCCGCCCGC
* * * * ** * *
11626179 CCGCTCGTTTCATCGGTTTGCTTTGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCAGACC
62 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * * * **
11626244 AAGGGTTACGACAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCAACTTGCGCAT
127 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * * * *
11626309 CCCGCCCCTCTGGCCGGTTGAGCGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGT
192 CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
** * ** **
11626374 TCATTCCCAGTCTAAG-ATCG-GATTGGACCGAGGGTTGCAGCAGCACATGCTGGATTTAGGCAT
257 TCATTCCCAGTCTAAGTATCGAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * *
11626437 GTGCTGGTGCCGCATTTTTCTTCATCGGGG---CA----C----CATCACCGGAAAACCTGACTG
322 GTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
* * * * * *
11626491 GCGGCATTGAGGTT---TCG-TC-A----GTCGGGGTGGTCTGCACACATGATGTGCGATGGGTG
387 ACGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
11626547 CTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTA
452 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
11626612 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACT
517 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
11626677 TTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCA
582 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
11626742 ACAAAAATACAAGGATCCCGTCTACCAAGTTTGGGACTAAAACTCCTTCCGAAAAAATTTTAAAA
647 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * * * * *
11626807 AATCTCAAACTGCAAAAAGTTTCAAAAATTGTGAAAAATCGAAAATGAGTCGTCCTGCCCTGAAA
712 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * **
11626872 CTTCACGTGAAGGCTCAAGAGACCATTGTATGAATTTACAATCCATAAAAACGGCATTGGCACAC
777 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
11626937 AGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
842 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* ** * * *
11626976 TCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCTAGCGTAGTGCCCACCCGCCCGCCCGCCCGT
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGC
* * * * *
11627041 TCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTGGATCGAAG
66 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * * * * * *
11627106 GTTGCAGTAGCAGGATTGGTAGCATGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATACCG
131 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG
* * * *
11627171 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTTGTGGGTTAACTTAGGCATACGGAGTTCAT
196 CCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
11627236 TCCCAGTCTAAGCATAGGAGTTTATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCCA-
261 TCCCAG--T---C-TA--AG--TA-T--C-G----AGA-C----CGGACCGAGGGTTGCGG-CAG
* * * * *
11627300 CACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACAATCGTTGGGAG
302 CACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAG
* *
11627365 CATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCG-GAGGGGTC--GGGGGTGCG
366 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAG-GGGGTCGGGGGGGTGTG
* *
11627427 CGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
430 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
11627492 CTCAAGAACTCACACCTCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTA
495 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
11627557 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGAATCACAAAATCTTGTACACTTCGAGTTTTTC
560 AAGTGTCTGAAATGGGGACACTTTTTTCAAATG-GTCACAAAATCTTGTACACTTCGAGTTTTTA
* ** *
11627622 GATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTTGCAAAAA
624 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * **
11627687 ATCCTTTCGAAAAATGTTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAG
689 CTCCTTCCGAAAAA-ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
*
11627752 AAAATC-AATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
753 AAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
11627816 AGTCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATACCTAAACCCACCTACCACCCTA
817 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * *
11627880 TCGATGCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCACGCCTGTCCGCCCGT
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGC
* * * * * * **
11627945 TCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGAT-TGAATCAGATTGAG
66 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAG
* * * * ** * * * *
11628009 AGTTGAGGCATCAGGATCGACAGCACGCAGAGGGGGACCTAGCTGACCCCCGGCTTGCACATCTC
130 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCC
* * * *
11628074 GCCCCTCTGGCCAGTTGAGCTCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
195 GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
11628139 TTCCCAGCCTAAGT-TCG-GATCGGACTGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTG
260 TTCCCAGTCTAAGTATCGAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* ** * * * * *
11628202 CTGGTGCAACATTTTTCTTCGTCAGGGCACCATCGACGGAGCATCGCTGGAGAACCTAACCGACG
325 TTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACG
* ** * * * * *
11628267 GCATTGGGGTTTCGGTGATCGGGGGGGCCGAGGGGGTGTGCGTACATGATGTGCGATGGGTGCTA
390 GCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
11628332 GTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
455 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
11628397 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTT
520 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
11628462 TTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACA
585 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
11628527 AAAATACAAGGATCAAGTATACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
650 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * *
11628592 CCTGAA-CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTT
715 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
11628656 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGTAGA
780 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
*
11628721 AATATGGAGATGTGCCTAAACCCACCTACCACCCTA
845 AATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
11628757 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGAATAGTGCCCGCCTGCCCGCCCGCCCGC
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGC
* * *
11628822 TCGTTTCGTCGGTAGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGACG
66 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * * * ** *
11628887 GTTGGGGTAGCAGGATTGGCAGCACGAAGAGGGGGAGTCGGCCGATCCCCAGCTTGCGCATC
131 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATC
11628949 AAGCCAACAA
Statistics
Matches: 6288, Mismatches: 835, Indels: 343
0.84 0.11 0.05
Matches are distributed among these distances:
858 182 0.03
860 1 0.00
861 1 0.00
862 458 0.07
863 33 0.01
864 145 0.02
866 4 0.00
867 2 0.00
868 36 0.01
869 2 0.00
870 3 0.00
871 30 0.00
872 1 0.00
873 3 0.00
875 1 0.00
876 2 0.00
877 300 0.05
878 67 0.01
879 167 0.03
880 164 0.03
881 274 0.04
882 562 0.09
883 216 0.03
884 337 0.05
885 46 0.01
886 247 0.04
887 1 0.00
888 259 0.04
889 185 0.03
890 135 0.02
891 2 0.00
892 17 0.00
893 1 0.00
894 5 0.00
895 77 0.01
896 14 0.00
898 9 0.00
899 3 0.00
900 2 0.00
901 309 0.05
902 315 0.05
903 103 0.02
904 379 0.06
905 227 0.04
906 189 0.03
907 491 0.08
908 281 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (880 bp):
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG
CCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGTATCGAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGT
TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGG
CATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTA
Found at i:11627256 original size:25 final size:26
Alignment explanation
Indices: 11627221--11627272 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
11627211 GTTAACTTAG
11627221 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11627247 GCATA-GGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11627272 G
1 G
11627273 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11629290 original size:26 final size:26
Alignment explanation
Indices: 11629254--11629306 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11629244 GTTGACTTAG
* *
11629254 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
11629280 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
11629306 G
1 G
11629307 AAAGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:11630156 original size:26 final size:26
Alignment explanation
Indices: 11630127--11630179 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11630117 GTTGACTTAG
*
11630127 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
11630153 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11630179 G
1 G
11630180 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11631332 original size:874 final size:864
Alignment explanation
Indices: 11629339--11631780 Score: 3087
Period size: 872 Copynumber: 2.8 Consensus size: 864
11629329 GACAGCACAT
**
11629339 GCTGGGCTCGGGCATGTGCTGGTG-TCGCATTTTTCTTCGTCGGGGCACCATCGTTGGAGAACCT
1 GCTGGGCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCACCGGGGCACCATCGTTGGAGAACCT
* * *
11629403 GACCTACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTTGTGCACACATGATGTGCGA
65 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGG-TGTGCGCACATGATGTGCGA
* *
11629468 TGGGTGCTGATACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-C
128 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
*
11629532 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGG
193 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAGGGG
**
11629597 -AACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATTTGAATTTTTTTGTGCA
258 AAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * * *
11629661 TGCCAAAAAAAATACAAGGATCATGTCTGCCAAGTTTGGGACCAAAACTCCTTCTGAAAAAATTT
322 AGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
11629726 TCAAAGATCCCAAACCGCAAAAAGTTTCAAAAATTGTGAAAATTAGAAAACGAGTTGTCTTGCCA
387 TAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCA
* * * * *
11629791 TGAGACTTCACGTGATGGCCTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGGATTGG
452 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
11629856 CATGTAGAAATATGAAGATGTCCCTAAACCCACTTACCACTCTATCGATCCACGGCTCGCGCATC
517 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
**
11629921 CCGTCTCTCTGGCCGACGT--TG-T-GCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAG
582 CCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCTGCCC-CTCGTTTTGTCGGTTGGCTTAG
* * * * * *
11629982 GCATACGGAGTTCGTTCCTAGTCTAAGAT-TGGACATGACTGAGGG-T-T-GCAACAGCAGGATG
646 GCATACGAAGTTCATTCCCAGTCTAAGATCAGGCCA-GACCGAGGGTTGTGGCAACAGCAGGATG
** * *
11630043 GGGGACCCGGCCGATCCCCGGCTTGCGCATACCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
710 GGGGACCCAACCGATCCCCGACTTGCGCATACCACCCCTCTGGCCGACTGAGCGCCCGCACGCTC
*
11630108 GTTCCATGGGTTGACTTAGGCATACGAAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCA
775 GTTCCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-ATACGGA--T-A-T-CCA
*
11630173 GTCTAAGATTGGACTGGACCGAGGGCTATGGCAGTACAC
834 GACT-AGA-TGGACTGGA-C--GGGCTA-GGCA--ACAC
**
11630212 GCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTTGGAGAACCTG
1 GCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTTGGAGAACCTG
* * * * *
11630277 ACTGACGGCATTAGGGTTCCGACGATCGGGGGGGCTGGAGGGTGTGCGCACATAATGTGCGATGG
66 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
11630342 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
131 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
11630407 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAA
196 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-GGGGAA
*
11630472 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCACTTTTTAGCTGAA-TTTTTTGTGCAAGC
260 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAGTTTTTAGCTGAATTTTTTTGTGCAAGC
*
11630536 CAACAAAAATACAAGGATCACGTGTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
325 CAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * *
11630601 AAAATCTCTAACCGCAAAAAGTTTTACAAATCGTGAAAAATAGAAAACGAGTCGTCTGGCCATGA
390 AAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGA
* * * *
11630666 AACTTCACATGAAGGCTTAA-GTACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCAC
455 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
11630730 GTAGAAATATGAACATGTGCCTAAACCGACCGACCACGCTATTGATCCACGGCTTGCGCATCCCG
520 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
11630795 TCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCTGCCCACTCGTTTTGTCGGTTGGCTTAGGCA
585 TCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCTGCCC-CTCGTTTTGTCGGTTGGCTTAGGCA
* *
11630860 TACGAAGTTCATTCCCAGTCTAAGATCAGGCCAGACCAAGGGTTGTGGCAGTAGGATCGGCCGTA
649 TACGAAGTTCATTCCCAGTCTAAGATCAGGCCAGACCGAGGGTTGTGGC---A--A-CAG-C--A
* * * *
11630925 CGTAGA-GGGGGACCCAACTGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
705 -G--GATGGGGGACCCAACCGATCCCCGACTTGCGCATACCACCCCTCTGGCCGACTGAGCGCCC
*** * * *
11630989 GCACGCTCGTTTTGTGTGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTTAG-TTC-GA-A-C
767 GCACGCTCGTTCCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATACGGATATC
* * * *
11631050 CGGACT-GA-GG-GTTG-C-GG-TA-GC-ACAT
832 CAGACTAGATGGACTGGACGGGCTAGGCAACAC
*
11631075 GCTGGGCTCGGG-ATGTGCTGGTGCTGCATTTTTCTTCACCGGGGTACCATCATCGAAGCATCTC
1 GCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGG---CACCATC---G--T-T-
* *
11631139 CGGAGAACCTGGCCGACGGCATTGGGGTTCTGACGATC-GGGGGGCCGAAGGGGGTGTGCGCACA
56 -GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG--GGGGGTGTGCGCACA
* *
11631203 TGATGTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAG
118 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
* *
11631268 AACTCACACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGTTGCCAGTAGCCATTAAAGTGT
183 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
11631333 CTGAAAAGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTA-AGCTTTGAGTTTTTAGCTGAA
248 CTG-AAAGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACA-C-TTCAGTTTTTAGCTGAA
*
11631397 TTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTT
310 TTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTT
* * * * * * *
11631462 CCAAAAAAATTTTAAAACATCTCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAAAGA
375 CCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* ** * *
11631527 GTTGTCTTCCCACAAAACTTCACGTGTAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAA
440 GTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
11631592 AAATGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGA-CTCA
505 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-CA
* * * * * * * * *
11631656 CGGCTTACGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCACCTGCTCGTCTG---CTCTTTTTGT
569 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCTGCCCCTCGTTTTGT
* * * **
11631718 TGGTTGGCTTAGGCATACGAAGTTCATTTCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGG
634 CGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGGCCAGACCGAGGGTTGTGG
11631781 TAGCACATGC
Statistics
Matches: 1386, Mismatches: 140, Indels: 86
0.86 0.09 0.05
Matches are distributed among these distances:
862 30 0.02
863 15 0.01
865 6 0.00
866 2 0.00
868 3 0.00
869 2 0.00
870 1 0.00
871 193 0.14
872 219 0.16
873 210 0.15
874 218 0.16
875 89 0.06
876 152 0.11
877 127 0.09
878 2 0.00
879 5 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 2 0.00
885 1 0.00
886 2 0.00
887 3 0.00
888 1 0.00
889 98 0.07
890 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
GCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTTGGAGAACCTG
ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAGGGGAAA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAGTTTTTAGCTGAATTTTTTTGTGCAAGCC
AACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCTGCCCCTCGTTTTGTCGGTTGGCTTAGGCATA
CGAAGTTCATTCCCAGTCTAAGATCAGGCCAGACCGAGGGTTGTGGCAACAGCAGGATGGGGGAC
CCAACCGATCCCCGACTTGCGCATACCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTCCA
TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATACGGATATCCAGACTAGATGGAC
TGGACGGGCTAGGCAACAC
Found at i:11633279 original size:26 final size:26
Alignment explanation
Indices: 11633228--11633280 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11633218 CCAGCCTGAT
**
11633228 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11633254 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11633280 C
1 C
11633281 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11634086 original size:26 final size:26
Alignment explanation
Indices: 11634050--11634102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11634040 CCGGTCCGAT
* *
11634050 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11634076 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11634102 C
1 C
11634103 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11635417 original size:890 final size:878
Alignment explanation
Indices: 11633682--11635863 Score: 2748
Period size: 890 Copynumber: 2.4 Consensus size: 878
11633672 GAAACTTTTC
* *
11633682 TATTTTTGTTGGCATGCACAAAAAAGTTCAGCTAAAAACTTGAAGTGTAAAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCA
* * * * *
11633747 TTTGAAAAAAGTATCCCCATTTCAAACACTTTAATTGCTACTGGCAGTAAACCTGTCAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
11633812 AATGCTCTTTAAGGGGGTGTGAGTTCTTGGGGTTTGATGAGGGATAGGGGGCCAATGTACGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCC
* *
11633877 AAGTACTAGCACCCATCGCACATCATGTGTGCACACCCCCCGACCCCTCCGATGTCGAAACCCCA
195 AAGTACCAGCACCCATCGCACATC-----TG----CCCCCCGACCCCCCCGATGTCGAAACCCCA
* *
11633942 ATGCCGTCGATCAGGTTCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGC
251 ATGCCGTCGATCAGGTTCTCCAACGATGGCGCCCCGACGAAGAAAAATACGGCACCAACACATGC
* * * *
11634007 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCTG
316 CCAAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTG
* * * * **
11634072 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCT
381 GATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACT
** *
11634137 CAGTCGACCAGAAGGGCAGGATACGCAAGCCAAGGATCGATCGGGTCCCCTCTACGGTCTGTCGA
446 CAACCGACCAGAAGGGCAGGATACGCAAGCCAAGGATCGATCGGGTCCCCTCTA-GGTCTGCCGA
* * *
11634202 TCCTGCTGCTGCAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAAATCCGTATGCCTAAGC
510 TCCTGCTGCTG-AACCCTCAGTCTGGTCCAATCTTACACTAGGAATGAAATCCGTATGCCTAAGC
* * * * *
11634267 TGATCGATGAAATGAACGGGCGGGCGAGCGGGCAGGCACTACGCCGGCCAGAGAGACGAGATGCG
574 TAACCGATGAAACGAACGGGCGGACGAGCGGGCAGGCACTACGCCGGCCAGACAGACGAGATGCG
*
11634332 CAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
639 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
11634397 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
704 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
11634462 GACGACTCGTTTTCTATTTTTCACGATATTCAAAACTTTTTGTGGTTCAAGATTTTTTTAAATTT
769 GACGACTCGTTTTCTATTTTTCACGATATTCAAAACTTTTTGTGGTTCAAGAATTTTTAAAATTT
11634527 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
834 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
11634572 TATTTTTGGTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCA
*
11634637 TTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
11634702 AATGTTCTTTAAGGGGGTGTGAGTTCTAGTGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGG-GCCAATATAAGGGCC
* * *
11634767 AAGTACCAGCACCCCTCGCACA-C-G-CCCCCGGCCCCCCCGATCGTCGAAACCCTAATGCCGTC
195 AAGTACCAGCACCCATCGCACATCTGCCCCCCGACCCCCCCGAT-GTCGAAACCCCAATGCCGTC
* * * * * * *
11634829 GGTTAGGTTCTTCGACGATGCTTCGGCGATGGCGCCCCGATGAAGAAAAGTACGGTACCAGCACA
259 GATCAGGTTC-TC--C-A-------ACGATGGCGCCCCGACGAAGAAAAATACGGCACCAACACA
* * * *
11634894 TGGCCAAGCCCAGCATGTGCTACCGCAACCTTCAGTCTGGTCTGATCTTAGACTGGGAATG-ACT
313 TGCCCAAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
* *
11634958 CTGGATGCTTAGACTGGGAATGAGCTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGC
378 CTGGATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGC
* * * *
11635023 ACTCAACCGGCCA-AACGGGC-GAGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCT-GTGTA
443 ACTCAACCGACCAGAA-GGGCAG-GATACGCAAGCCAAGGATCGATCGGGT-CCCCTCTAG-GT-
* * ** * * *
11635085 TTGCCGATCCTGCTATCGTG-ACCCTTGGTCTGG-CCTGATCTTACACTAGGAATGAACTCTGTA
503 CTGCCGATCCTGCT-GC-TGAACCCTCAGTCTGGTCC-AATCTTACACTAGGAATGAAATCCGTA
* * * *
11635148 TGCCTAAGGC-AACCGATGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGACAG
565 TGCCTAA-GCTAACCGATGAAACGAACGGGCGGACGAGCGGGCAGGCACTACGCCGGCCAGACAG
* *
11635212 ACGAGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG
629 ACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* *
11635277 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGT
694 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * ** *
11635342 TTCATGGCATGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-TCGGTTCGAGAAT
759 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATATTCAAAACTTTTTGT-GGTTCAAGAAT
* *
11635406 TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATTCTTG
823 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
11635462 TATTTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAC
1 TA--TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAC
* *
11635527 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCT
64 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
11635592 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCAATATAAGGGC
129 CAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGC
* * * * *
11635657 CAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCGGCCCCCCGGATCATCGGAACCC
194 CAAGTACCAGCACCCATCGCACATC---T--G----CCCCCCGACCCCCCCGAT-GTCGAAACCC
* * * *
11635722 CAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGG
249 CAATGCCGTCGATCAGGTTCTCC----A-------ACGATGGCGCCCCGACGAAGAAAAATACGG
* * * * * ** * *
11635787 CACTAGCACATACCCGAGCCTAGCATGTGCTGTCGCAACCCTCAGCCCGGTCCTGATCTTAGATT
303 CACCAACACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCC-GATCTTAGACT
*
11635852 GGAAATGAACTC
367 GGGAATGAACTC
11635864 CATATGCCTA
Statistics
Matches: 1125, Mismatches: 125, Indels: 69
0.85 0.09 0.05
Matches are distributed among these distances:
878 15 0.01
879 27 0.02
880 2 0.00
882 1 0.00
883 2 0.00
888 4 0.00
889 107 0.10
890 620 0.55
891 37 0.03
892 170 0.15
898 1 0.00
900 1 0.00
902 2 0.00
903 116 0.10
904 16 0.01
905 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (878 bp):
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCTGCCCCCCGACCCCCCCGATGTCGAAACCCCAATGCCGTCGA
TCAGGTTCTCCAACGATGGCGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCAAGCCCAG
CATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGGATGCTTAGA
CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAACCGACCA
GAAGGGCAGGATACGCAAGCCAAGGATCGATCGGGTCCCCTCTAGGTCTGCCGATCCTGCTGCTG
AACCCTCAGTCTGGTCCAATCTTACACTAGGAATGAAATCCGTATGCCTAAGCTAACCGATGAAA
CGAACGGGCGGACGAGCGGGCAGGCACTACGCCGGCCAGACAGACGAGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATATTCAAAACTTTTTGTGGTTCAAGAATTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
Found at i:11636589 original size:26 final size:26
Alignment explanation
Indices: 11636553--11636605 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11636543 CCGGTCTGAT
11636553 CTTAGACTGGGAATGAA-TGCCGTATG
1 CTTAGACTGGGAATGAACT-CCGTATG
11636579 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11636605 C
1 C
11636606 CTGAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11637484 original size:26 final size:26
Alignment explanation
Indices: 11637435--11637485 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11637425 CGGTCTGATC
**
11637435 TTAGACTGGAAATGAACTTTGTATGG
1 TTAGACTGGAAATGAACTCCGTATGG
*
11637461 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGAAATGAACTCCGTATG
11637486 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCGTATGG
Found at i:11638369 original size:26 final size:25
Alignment explanation
Indices: 11638330--11638381 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
11638320 CCGGTCCGAT
*
11638330 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTC-GTATG
11638356 CTTAGACTGAGAATGAACTCGTATG
1 CTTAGACTGAGAATGAACTCGTATG
11638381 C
1 C
11638382 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGAGAATGAACTCGTATG
Found at i:11638527 original size:895 final size:882
Alignment explanation
Indices: 11635841--11640332 Score: 4284
Period size: 981 Copynumber: 4.9 Consensus size: 882
11635831 GCCCGGTCCT
* * * * * *
11635841 GATCTTAGATTGGAAATGAACTCCATATGCCTAACCCAACCGATGAAAC-GAGCGGGCGGGCGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGCGGGCGGGGGGG
*** * * * * * * * *
11635905 CACTATGTCGACTAGAGAGACGGGGTGCGGAAGTCATGAATCGATAGGGTGGTAGGTGAGTTTAG
66 CACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
11635970 GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAGTTCATAAAATGGTCCC
131 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * **
11636035 TTAAGCCTTCATGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * ** * *
11636100 TTTTTATGATTCTG-GATTTTTTTAACTTTTTTTCG-AAAGAGTTTTGGCCCCAAACTTGGTAGA
261 TTTTTACGGTTC-GAGA-TTTTTTAAAATTTTTTCGCAAGGAGTTTTGGCCCCAAACATGGTAGA
**
11636163 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTTCCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGTGTACAAGA
11636228 TTTTGTGACCATTTGAAAAAAGTGTCCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
389 TTTTGTGACCATTTG-AAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
11636293 TGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTT-TCGAGGTTTGATGAAGGATAGGGGGCC
452 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGAGGATAGGGGGCC
* * * *
11636357 AATATAAGGACCAAGTACCAGCACCTATCGCACATCATGTACGCACACCCCCTGGCCCCCCGATC
517 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
* * ** * * *
11636422 GCCAGAACCTCAATGTTGTTGGTCAGGTTCTCCGACGATGCTCCAACGATGGT-GCCTTGACGAA
582 GCGA-AACCCCAATGCCGTCGGTCAGGTTCT-C--CG--G-T-----GATGGTGGCC-CGATGAA
* *** * * *
11636486 GAAAAATGTGGCACCAGCACATGCCCGAGCCGAGCATGTAAAGCCGCAACCATCGGCCCGGTCTG
634 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCTG
* *
11636551 ATCTTAGACTGGGAATGAA-TGCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTTAA
699 ATCTTAGACTGGGAATGAACT-CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
11636615 CCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGA
763 CCCACGAAATGAGCGTGCGAGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * * * * *
11636680 TCGGGTTCCCCTCTACGTGCTGCCAATCTTGTTGCCGCAACCTTCGATCTTATCT
828 TCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCC
* * * * *
11636735 GATCTTAGACTAGAAATGAACTACGTATGCCTAAGCCAACCGACGAAA-TGAGCGGGCGGGTGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGCGGGCGGGGGGG
* * *
11636799 CACTACACCGGCTAGAGAGACGGGATGCACAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAG
66 CACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
11636864 GCACATCTTTATATTTCTGCTTTCCAATTCCATTTTTATGGCTTGTAAATTTATACAATGGTCCC
131 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
11636929 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGCCTCGTTTTCTATTTTTCACGATTTGTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * ** * *
11636994 ATTTTGCGGTTCAAGATTTTTTAAAATTTTTTCAAAAGGACTTTTGGCCCCAAAC-T--TAGACA
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGCAAGGAGTTTTGGCCCCAAACATGGTAGACG
* * * *
11637056 TGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGTGTACAAGATT
* * **
11637121 TTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTAACAGCAAACCTGT
391 TTGTGACCATTT-GAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
11637186 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT-GAGGGATAGGGGGCCAA
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGA-GGATAGGGGGCCAA
* *
11637250 TATAAGGGCCAAGTGCCAGCACCCATCGGACATCATGTGCGCACACCCCCCGGCCCCCCTGATCG
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCG
* ** * ** *
11637315 CTGGAACCCCAATGTTGCCGGTCAGGTTCTCCGACGATGGT-GCCCTGATGAAGAAAAATATGGC
583 C-GAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGGCCC-GATGAAGAAAAATGTGGC
* * * * *
11637379 ATCAGCACATGCCTGGGCCCAGCATGTGCTGCGGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
646 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGG
* ** * * **
11637444 AAATGAACTTTGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAG
711 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
* * * ** * * * * *
11637509 CATGTGGGTGCTCAGTCGGCCAGAAGGGCGGAATGCGCAAGCTGGGGATCGGTCGGGTCCCCTTC
776 CGTGCGAGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
** ** * * *
11637574 TGTGTGCTGTCGA-CCTTGC-AGCCATAATCGTC-AGTTTCG-TCC
841 TACGTGCTGTCGATCC-TGCTA-CCGCAACCCTCGA-TCT-GATCC
*
11637616 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCAGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AG-AG-C--G--GGC
** *
11637681 AGGCGGGCGAGCACTACATTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTA
59 -GG-GGG-G-GCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
11637746 GGCGGGATTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
120 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * * * *
11637811 ACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCGTGGGAAGACAACTCTTTTTTTATTTTTCATG
185 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
11637876 ATTTTTGAAACTTTTTACTGTTCGAGATGTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
250 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGCAAGGAGTTTTGGCCCCAAA
* *
11637941 CATGGTAGACGTGATCCTTGTATTGTTTTTTGGCATGCACAAAAAAATTCACCTAAAAACTTGAA
315 CATGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAA
*
11638006 GTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACT-GC
379 GTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * * * * *
11638070 AACAAACCT-TCTAAACCTCAAATGCTCCTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGGTGGA
444 AGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGAGGA
* *
11638134 TAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCATGTGTGCACACCCCCCGGT
508 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-
* *
11638199 ACCCCCCGATCGTCGAAACCCCAACGCCGTCGGTCAGGTTCTCCGGTGATGGTGGCCCGGTGAAG
572 -CCCCCCGATCG-CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGGCCCGATGAAG
** * * * *
11638264 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTTGATCCGGTCCGA
635 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCTGA
* * *
11638329 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGAGAATGAACT-CGTATGCCTAAGTTAACC
700 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
11638393 CACGAAATGAGCGTGCGAGCATTCAGTCGGCCAGAGGGACGGGATGCGCAAGCCGGGGATTGGTT
765 CACGAAATGAGCGTGCGAGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * * *
11638458 GGGTCCCCCTCTCCGTGCTGTCGATCCTACTACCGCAACCCTC-AGTCTGGTCT
830 GGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGA-TCTGATCC
*
11638511 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC-GAGCGGGCGTGCGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGCGGGC--G-GGG
* * *
11638575 TGGGCACTACGCCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGTT
63 -GGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
11638640 TTAGACACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGG
127 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
11638705 TCCCTTAAGCCTTCACGTGAACTGTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTC
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ******
11638770 AAACCTTTTTAGGGTTC-AGGATTTTTTAAAATTTTTTCGCAAGGAGTTTT--CTATTTTTCATG
257 AAA-CTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGCAAGGAGTTTTGGC-CCCAAACATG
* * ** ** * * *** * * ** *
11638832 ATTTTCAAAATTTTTGCGGTTTGGGATTTTT-TAAAAT-TTTTTCAGAAAACATTTTGGC-CCCA
319 ---GT-AGACGTGAT-C--CTT-GTATTTTTGT----TGGCATGCACAAAA-AAATT--CACCTA
** * * ** *
11638894 AACTAGGTAGACGTG-ACCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACTCA
369 AA--AACTCGAAGTGTA--CAAG-A-TTTTG-T-G-A--C-C------ATT----T--GAA---A
*** ** * ** **
11638958 AAGTGTACAAGATTTTGTGAC-CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
407 AAGTGT-CCCCA-TTTCAGACAC-TTT-----AA-TGGCTAC-TGGCAG-CA----AA---C--C
* * * * * * * **
11639022 AGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATATGAGTTCTCGAGGTTTGAT-GA
452 -TGTA--AAA--TCTCAAAT-GC---T-CT-TTAAGGGGGTG-TGAGTTCTCGAGGTTTGATGGA
*
11639086 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCT
505 -GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * *
11639151 CGGCCCCCCTAACCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGGTGCCCCGATG
569 CGGCCCCCC-GATCGCGA-AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGGCCCGATG
* *
11639216 AAGAAAAATGTGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
632 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT---T--G---
*
11639281 TAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
689 --GTC-----C--GG--T---C-T-G-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
11639346 GGAATGAACTCCGTATGCCTAAGTAAACCCACGAAATGAACGTGCGGGCGCTCAACCGGCCAAAG
736 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCACTCAGCCGGCCAGAG
* * * * * * * * ** *
11639411 GGGTGGGATGGGCAAGCGGGGGATCGGCCGGG-ACCCCTTTACGTGCTGTTGATCTTTTTTCCGC
801 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGC
11639475 AACCCTCGATCTGATCC
866 AACCCTCGATCTGATCC
* * *
11639492 AATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACA-AGCGGGCAGGCGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGCGGGC--G-GGG
*** * *
11639556 CGGGCACTATGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGT
63 -GGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11639621 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTGGTAAATTCATACATTGG
127 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
** * * *
11639686 TCCCTTAAAACTTCACGTGAAGTTTGATGGCAAGATGACTCGTTTTCTTTTTTTCACGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
11639751 AAACTTTTTGCGGTTCGGGATTTTTT-AAATTTTTTCGCAAGGAGTTTTGGCCCCAAACTTGGTA
257 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGCAAGGAGTTTTGGCCCCAAACATGGTA
** * * *
11639815 GACGTGATCCTTGTATTTTTGTTGGCAAACACAAAAAAATTCAGCTAAAAACACGAACTGTACAA
322 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGTGTACAA
*
11639880 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAAC
387 GATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
** * *
11639945 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACATTTGATGAAGGATAGGGGGA
451 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGAGGATAGGGGGC
* * *
11640010 AAATATAAGGGCCAAGTACTAGGACCCATCGCACATCATGTGCGCACACCACCCCCCGGCCCCCC
516 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-CACCCCCCGG-CCCCC
* * *
11640075 CGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCTAGCGATGTTGCCTCGA
577 CGATCG-CGAAACCCCAATGCCGTCGGTCAGGTTCTCC-G-G-TG--AT-G-G-TG--GCC-CGA
** * * * *
11640140 CAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGATGCCACAACCCTTGGTCCGG
630 TGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGG
*
11640205 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTT-GACTGGGAATGAACTCCATATGCCTAAGT
695 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
11640269 CAACCCATGAAATGAGAGTGC-AGGCGCTCAACCGGCAAGAGGGGTGGGATGCGCAAGCCGGGGA
760 CAACCCACGAAATGAGCGTGCGA-GCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
11640333 GGTCCGATCT
Statistics
Matches: 2947, Mismatches: 471, Indels: 355
0.78 0.12 0.09
Matches are distributed among these distances:
880 2 0.00
881 256 0.09
882 1 0.00
883 1 0.00
884 2 0.00
885 1 0.00
886 1 0.00
887 182 0.06
888 43 0.01
889 8 0.00
890 72 0.02
891 175 0.06
892 33 0.01
893 237 0.08
894 260 0.09
895 267 0.09
896 204 0.07
897 73 0.02
898 5 0.00
899 84 0.03
900 36 0.01
901 4 0.00
902 2 0.00
903 6 0.00
904 2 0.00
905 1 0.00
906 1 0.00
907 1 0.00
908 1 0.00
909 3 0.00
911 1 0.00
912 68 0.02
913 8 0.00
914 4 0.00
915 43 0.01
916 10 0.00
918 3 0.00
919 7 0.00
920 1 0.00
921 7 0.00
922 1 0.00
923 5 0.00
924 8 0.00
925 5 0.00
926 61 0.02
929 2 0.00
931 2 0.00
932 4 0.00
933 2 0.00
934 6 0.00
935 6 0.00
936 2 0.00
939 2 0.00
941 9 0.00
942 4 0.00
943 7 0.00
944 1 0.00
946 2 0.00
947 4 0.00
949 5 0.00
950 1 0.00
951 3 0.00
953 1 0.00
954 9 0.00
955 101 0.03
956 82 0.03
957 1 0.00
958 2 0.00
960 2 0.00
961 1 0.00
962 1 0.00
963 5 0.00
964 1 0.00
965 5 0.00
966 5 0.00
967 2 0.00
968 4 0.00
969 4 0.00
970 7 0.00
972 9 0.00
973 3 0.00
974 1 0.00
975 1 0.00
976 4 0.00
977 2 0.00
979 23 0.01
980 24 0.01
981 317 0.11
982 72 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (882 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGCGGGCGGGGGGG
CACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGCAAGGAGTTTTGGCCCCAAACATGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGAGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCGA
AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGGCCCGATGAAGAAAAATGTGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
GAGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGT
GCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCC
Found at i:11638869 original size:67 final size:69
Alignment explanation
Indices: 11638746--11638874 Score: 183
Period size: 67 Copynumber: 1.9 Consensus size: 69
11638736 AAGACGACTC
*
11638746 GTTTTCTATTTTTCACAATTTTTCAAACCTTTTTAGGGTTCAGGATTTTTTAAAATTTTTTCGCA
1 GTTTTCTATTTTTCACAATTTTTCAAACATTTTTAGGGTTCAGGATTTTTTAAAATTTTTTCGCA
11638811 AGGA
66 AGGA
** **
11638815 GTTTTCTATTTTTCATGA-TTTTCAAA-ATTTTT-GCGGTTTGGGATTTTTTAAAATTTTTTC
1 GTTTTCTATTTTTCACAATTTTTCAAACATTTTTAG-GGTTCAGGATTTTTTAAAATTTTTTC
11638875 AGAAAACATT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
66 1 0.02
67 29 0.54
68 8 0.15
69 16 0.30
ACGTcount: A:0.22, C:0.11, G:0.13, T:0.53
Consensus pattern (69 bp):
GTTTTCTATTTTTCACAATTTTTCAAACATTTTTAGGGTTCAGGATTTTTTAAAATTTTTTCGCA
AGGA
Found at i:11639321 original size:26 final size:26
Alignment explanation
Indices: 11639285--11639363 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
11639275 CCGATCTAAT
*
11639285 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11639311 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11639337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11639363 C
1 C
11639364 CTAAGTAAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11640249 original size:25 final size:25
Alignment explanation
Indices: 11640215--11640262 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
11640205 TCTGATCTTA
*
11640215 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCATATGCTT
11640240 GACTGGGAATGAACTCCATATGC
1 GACTGGGAATGAACTCCATATGC
11640263 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (25 bp):
GACTGGGAATGAACTCCATATGCTT
Found at i:11641084 original size:26 final size:26
Alignment explanation
Indices: 11641048--11641126 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
11641038 CCGATCTAAT
*
11641048 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11641074 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11641100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11641126 C
1 C
11641127 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11642391 original size:893 final size:895
Alignment explanation
Indices: 11640334--11644032 Score: 4946
Period size: 892 Copynumber: 4.1 Consensus size: 895
11640324 AGCCGGGGAG
* * * ** *
11640334 GTCCGATCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACTAACGAAACGAGCGGG
1 GTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGG
* *
11640399 CGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGT
66 CGGGC----GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
11640464 AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
127 AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
11640529 TACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
192 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
11640594 GATTTTTGAAACTTTTTGCAGTTCGAGACTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
257 GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * *
11640659 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAACACTCGAA
322 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
* * *
11640723 GTGCACAAGATTTTGTGTCCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGG
387 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
11640788 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
452 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
*
11640853 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGC
517 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
** * *
11640918 CCCCCTAACCGCC-AGAACCCCAATGCCGTCGGTCAGGTTCTCCG---A---T----GATGGTGC
582 CCCCCCGATCGCCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCACGATGGTGC
* * * *
11640972 CCCGATGAAGAAAAATGTGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
646 CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G
11641037 TCCGATCTAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC-CGTATGC
710 ---G------TC-----C--GG--T---C--CG-AT-CTTAGACTGGGAATGAACTCTCGTATGC
* *
11641101 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGTC
750 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * *
11641166 GGCCAGAGAGGCGGGATGCCCAA-CTGGGGATCAGTCGGGTCCCTCTCTACGTGCTGTCGATCCT
815 GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCT
* *
11641230 ACTACCAG-AACCCTCA
880 GCTACC-GCAACACTCA
** * * * *
11641246 GTTTGGTTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAACCAACCGACAAAACGAGCGGG
1 GTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGG
* * *
11641311 CGGGCGGGCACTACGTCAGCCAGAGAGACAGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGT
66 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* **
11641376 GGGTTTGGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
11641441 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCACGATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
11641506 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTCAGATGGAGTTTTGGCCCCAAACCT
261 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* * *
11641570 GGAAGACATGATCCTTGTATTTTTGTTGGCATACATAAAAAAATTCAGCTAAAAACTCAAAGTGT
326 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
* * *
11641635 ACAAGAGTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGC
391 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
11641700 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
456 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* * *
11641765 GGGCCAATATAAGGGACAAGTACCAGCACCCATCGTACATCATGTGTGCACACCCCCCGGCCCCC
521 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * *
11641830 CCGATCGTCGAAACCCCGATGCCGTCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCTG
586 CCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCC-ACGATGGTGCCCCG
* * * **
11641895 GTGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTTGGTTTG
650 GTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* **
11641960 GTCCGATCTTAGATTGGGAATGAACTCTC-TATGCTTAGACTGGGAATGAACTTTGTATGCCTAA
715 GTCCGATCTTAGACTGGGAATGAACTCTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
11642024 GTCAACCTACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGA-GGGCTAGGATGCGTAAGCCAGG
780 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-AGGATGCGCAAGCCGGG
* * * * * * *
11642088 GATCGGTCGGGTCCCCCTTTGCATGCTGCCAATCCTGCTGCCGTAACCCTCA
844 GATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACACTCA
* ** * *
11642140 GTCCGGTCCAATCTTAGACT-GGAATGAACTCTATATGCCTAAGCCAACCAACAAAACAAGCGGG
1 GTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGG
* *
11642204 TGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
66 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
11642269 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
11642334 ATGGTCCCTTAAGCCTTCACATGTAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* *
11642399 TTTGAAACTTTTTGTGGTTCG-GTATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGCCCCAAACT
261 TTTGAAACTTTTTGCGGTTCGAG-ATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * * *
11642463 TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTA
325 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
* *
11642528 TACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAG
390 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * * *
11642593 CAAACCCGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGCGTTCTTAAGGTTTGATGTGGGATAG
455 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
11642658 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
520 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC
* * * ** *
11642723 CTCCGATCGCCAAAACCTCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTAACGATGGTGCCC
584 CCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTC-CACGATGGTGCCC
* * * *
11642788 CGGTGAAGAAAAATGCGGCACCAGGACATGCCCGAGCCTAGCATGTGCAGCTGCAACCCTCGGTC
648 CGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * * * *
11642853 CGGTCCAATCTTGGACTAGGAATGAACTC-AGCATGCTTAGACTGGGAATGAACTCCGTAAGCCT
713 CGGTCCGATCTTAGACTGGGAATGAACTCTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * ** *
11642917 AAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAATCGA
778 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGG
* * * **
11642982 GGATCGATCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGCAACACTTG
843 GGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACACTCA
* * *
11643035 GTCCAG-CCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGA----
1 GTCCGGTCC-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGG
* * *
11643095 GCGGGCGGGCACTACGCCGGCCAGAGAAACTGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
65 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
** *
11643160 TGGGTTTAGGCACATCTTCATATTTCTATATGCCAATCCCATTTTTATGGCTTGTAAATTCATAC
130 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
11643225 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTATTCACGAT
195 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * **
11643290 TTTGGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTACCAAACT
260 TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* *
11643355 TGGTAGACGTGATCCTTGTATTTTT-TTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
325 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
* * *
11643419 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTCGTAG
390 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
11643484 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAG
455 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* *
11643549 GGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCACC-CCAA
520 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGC--
* * * * *
11643613 CCCCCCTATTC-CCGGAACCCCAATGTCGCCGGTCAGGTTCTTCGACAATGCTCCAGTGATGGTG
582 CCCCCCGA-TCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCA-CGATGGTG
* * * * **
11643677 -CCCGGCCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCTAGCATGTGTTGTAGCAACCCTC
645 CCCCGG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* *
11643741 AGTCCGGTCCGATCTTAGATTGGGAATGAACT-TCGTATGCTTAGACTGGGAATGAACTCCGTAT
709 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCTCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
11643805 GCCTAAGTCAACCCGCGAAACGAGTGTGCAGGCGCTCAGTCTGG-CAGAGGGGC-GAGATGCGCA
774 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGGCCAGAGGGGCAG-GATGCGCA
* * * * **
11643868 AGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACATTTG
837 AGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACACTCA
* * * *
11643927 GTCTGGTCTGATCTTAGAC-AGGGAATGAACTCCGTATGCCTAACCCAACTGACAAAACAAGTAG
1 GTCCGGTCCGATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC--G-A-
* * *
11643991 GCGGGCGAGTGGGCACTACGTCGGCCAGAGAGATGGGATGCG
61 GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
11644033 TAACTTTTTA
Statistics
Matches: 2465, Mismatches: 277, Indels: 102
0.87 0.10 0.04
Matches are distributed among these distances:
890 5 0.00
891 216 0.09
892 571 0.23
893 357 0.14
894 321 0.13
895 283 0.11
896 37 0.02
897 1 0.00
900 33 0.01
902 2 0.00
907 59 0.02
908 453 0.18
909 2 0.00
911 1 0.00
912 58 0.02
914 1 0.00
915 1 0.00
918 1 0.00
919 63 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGG
CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCACGATGGTGCCCCGG
TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
TCCGATCTTAGACTGGGAATGAACTCTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
TCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACACTCA
Found at i:11643790 original size:26 final size:26
Alignment explanation
Indices: 11643754--11643806 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11643744 CCGGTCCGAT
* *
11643754 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11643780 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11643806 C
1 C
11643807 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11644519 original size:26 final size:26
Alignment explanation
Indices: 11644490--11644542 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11644480 CTGGTCCGAT
*
11644490 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
11644516 CTTAGACTGTGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
11644542 C
1 C
11644543 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:11645041 original size:732 final size:727
Alignment explanation
Indices: 11643296--11645519 Score: 2825
Period size: 732 Copynumber: 3.0 Consensus size: 727
11643286 CGATTTTGGA
** * **
11643296 AACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTACCAAACTTGGTAG
1 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
11643361 ACGTGATCCTTGTATTT-TTTTGGCACGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
66 ACGTGATCCTTGTATTTATCTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
11643425 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTCGTAGCAAACC
131 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
11643490 TGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
196 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
11643555 AATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCACCCCAACCCCCCT
261 AATATAAGGGCCAAGTACCAGCACC-ATCGCACATCATGTGCGCACACCCC-CCGC--CCCCCCG
* * * * *
11643620 ATTC-CCGGAACCCCAATGTCGCCGGTCAGGTTCTTCGACAATGCTCCAGTGATGGTG-CCCGGC
322 A-TCGCC-GAACCCCAAT-ACGCCAGTCAGGTTCTCCGGCGATGCTCCAGTGATGGTGCCCCGG-
* * * * *
11643683 CGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCTAGCATGTGTTGT-AGCAACCCTCAGTCCG
383 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCA-CAACCCTCTGTCTG
* *
11643747 GTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
447 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * ** * * * * **
11643812 TCAACCCGCGAAACGAGTGTGCAGGCGCTCAGTCTGGCAGAGGGGCGAGATGCGCAAGCCGGGGA
512 TCAACGCACGAAATGAGCGTGTGGGTGCTCAGTCAGCCAGAGGGGCGGGATGCGCAAGATGGGGA
* ** * * * ** ** * *
11643877 TCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACATTTGGTCTGGTCTGATCTT
577 TCGGTCGGGTCCCCCTCTATGTTTTGCTGATCTTGCTGCCGTAACCCTCGGTCGGGTC--ATCTT
* * * *
11643942 AGAC-AGGGAATGAACTCCGTATGCCTAACCCAA-CTGACAAAACAAGTAGGCGGGCGAGTGGGC
640 AGACTA-GGAATGAACTCCGTATGCCTAAGCCAATC-GAC-GAA-ATG-A-GCGGGCGGGTGGGC
11644005 ACTACGTCGGCCAGAGAGATGGGATGCGT
699 ACTACGTCGGCCAGAGAGATGGGATGCGT
* *
11644034 AACTTTTTACGGTTCAGGATTTTTTAAAATTTCTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
1 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
11644099 ACGTGATCCTTGTATTTATCTTGGCATGTACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
66 ACGTGATCCTTGTATTTATCTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
11644164 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCTA-CAAAC
131 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAAC
* ** *
11644228 CAGTAAAATCTCAAATGCTCTTTAAGGGGGTGAAAGTTCTCGGGGTTTGATGAGGGATAGGGGGC
195 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
11644293 CAATATAAGAGCCAAGTACCAGCACTCATCGCACATCATCTGCGCACACCCCCCGCCCCCCCGAT
260 CAATATAAGGGCCAAGTACCAGCAC-CATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGAT
* *
11644358 CGCCTGAACCCCAATACCGCCAGTCAGGTTCTCCGGTGATGCTCCAGTGATGGTGCCCCGGTGAA
324 CGCC-GAACCCCAATA-CGCCAGTCAGGTTCTCCGGCGATGCTCCAGTGATGGTGCCCCGGCGAA
* *
11644423 GAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCACAACCCTCTGTCTGGTCCG
387 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCTGTCTGGTCCG
* *
11644488 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGTGAATCAACTCCGTATGCCTAAGTCAAC
452 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
11644553 GCACGAAATGAGCGTGTGGGTGCTCAGTCAGCCAGAGGGGCGGGATGCGCAAGATGGGGATCGGT
517 GCACGAAATGAGCGTGTGGGTGCTCAGTCAGCCAGAGGGGCGGGATGCGCAAGATGGGGATCGGT
11644618 CGGGTCCCCCTCTATGTTTTGCTGATCTTGCTGCCGTAACCCTCGGTCGGGTCCAATCTTAGACT
582 CGGGTCCCCCTCTATGTTTTGCTGATCTTGCTGCCGTAACCCTCGGTCGGGT-C-ATCTTAGACT
* *
11644683 AGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGAGCGGGCGGGCGGGCTCTACGTCGGC
645 AGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGAGCGGGCGGGTGGGCACTACGTCGGC
*
11644748 TAGAGAGATGGGATGCGT
710 CAGAGAGATGGGATGCGT
* *
11644766 AACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAG
1 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
** *
11644831 AATTGATCCTTGTATTTATCTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTGCAAG
66 ACGTGATCCTTGTATTTATCTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
11644896 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
131 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
11644961 TGTAAAATCTCAAATGCTCTTTACGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCC
196 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* ** * * *
11645026 GATATAAGGGCCAAGTATTAGCAGCCATGGCACATCATGTGCGCACATCACCCCGGCCCTCCCGA
261 AATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACA-C-CCCCCGCCCCCCCGA
* * * * * * * *
11645091 TCGTCGAAATCCCAATGATGCCTGTCAAGTTCTCCAGCGATGCTCC-GACGATGGTGCCCCGACG
323 TCGCCG-AACCCCAAT-ACGCCAGTCAGGTTCTCCGGCGATGCTCCAG-TGATGGTGCCCCGGCG
* * * *
11645155 AAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCATAATCCTCGGTCCGATC
385 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAA-CC-C--T-C--T-
11645220 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
442 -G----T---CT-GG--T---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
11645285 GGAATGAACTCCGTATGCCTAAGTCAAATGCACGATATGAACGTGTGGGTGCTCAGTCGGCCAGA
489 GGAATGAACTCCGTATGCCTAAGTC-AACGCACGAAATGAGCGTGTGGGTGCTCAGTCAGCCAGA
* ** * * * *
11645350 GGGGCGGGATGCCCAAGATGGGGATCGACCAGGTCCCCCTCTGTGTTTTG-TCGATCTTACTGCT
553 GGGGCGGGATGCGCAAGATGGGGATCGGTCGGGTCCCCCTCTATGTTTTGCT-GATCTTGCTGCC
* *
11645414 GTAACCCTCGGTCGGG---TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCAACGAAA
617 GTAACCCTCGGTCGGGTCATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAA
*
11645476 TGAGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGC
682 TGAGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGATGGGATGC
11645520 ACAAGCCGCG
Statistics
Matches: 1307, Mismatches: 134, Indels: 72
0.86 0.09 0.05
Matches are distributed among these distances:
731 1 0.00
732 321 0.25
733 5 0.00
734 108 0.08
735 7 0.01
736 304 0.23
737 9 0.01
738 79 0.06
739 209 0.16
740 2 0.00
741 1 0.00
743 1 0.00
747 1 0.00
750 2 0.00
751 2 0.00
753 1 0.00
756 85 0.07
757 1 0.00
758 1 0.00
759 2 0.00
760 59 0.05
761 106 0.08
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (727 bp):
AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTATCTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCG
CCGAACCCCAATACGCCAGTCAGGTTCTCCGGCGATGCTCCAGTGATGGTGCCCCGGCGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCTGTCTGGTCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCAC
GAAATGAGCGTGTGGGTGCTCAGTCAGCCAGAGGGGCGGGATGCGCAAGATGGGGATCGGTCGGG
TCCCCCTCTATGTTTTGCTGATCTTGCTGCCGTAACCCTCGGTCGGGTCATCTTAGACTAGGAAT
GAACTCCGTATGCCTAAGCCAATCGACGAAATGAGCGGGCGGGTGGGCACTACGTCGGCCAGAGA
GATGGGATGCGT
Found at i:11645260 original size:26 final size:26
Alignment explanation
Indices: 11645224--11645302 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
11645214 CCGATCCGAT
*
11645224 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11645250 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11645276 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11645302 C
1 C
11645303 CTAAGTCAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11646152 original size:26 final size:26
Alignment explanation
Indices: 11646116--11646168 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11646106 CTGGTCTGAT
*
11646116 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
11646142 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
11646168 C
1 C
11646169 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:11647051 original size:26 final size:26
Alignment explanation
Indices: 11647015--11647067 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11647005 CTGGTCTGAT
*
11647015 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11647041 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11647067 C
1 C
11647068 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11648670 original size:26 final size:26
Alignment explanation
Indices: 11648641--11648693 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11648631 GTTGACTTAG
11648641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11648667 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11648693 G
1 G
11648694 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11649414 original size:26 final size:26
Alignment explanation
Indices: 11649378--11649430 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11649368 GTTGACTTAG
*
11649378 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
11649404 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
11649430 G
1 G
11649431 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:11650057 original size:729 final size:733
Alignment explanation
Indices: 11648631--11650085 Score: 2262
Period size: 729 Copynumber: 2.0 Consensus size: 733
11648621 CGTTTCGTGG
* *
11648631 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
* * *
11648696 CGGACCGGATCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
66 CGGACCAGATCGAGGGTTGCGACAGCACATGCTACGCTCGGGAATGTGCTGGTGCCGCATTTTTC
** * *
11648761 TTCGTCGGGGCACCATCACCAGAGTATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCTGACG
131 TTCACCGGGGCACCATCACCAGAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACG
* * *
11648826 ATCGGGGGGGCTGGGGGGGTGTGTGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTTTAT
196 ATCGGGGGGGCTCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
11648891 TGGCCCCATATCTCGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
261 TGGCCCCATATCCCGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
11648956 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTTACAAAA
326 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
11649021 TCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAGCAAAAATACAAGGATCACG
391 TCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *** * *
11649086 TCTACCAAGTTTGGGGCTAAAACCCCTTCCGAAAAAATTTGAGAAAATCTTGAGCCGCAAAAAGA
456 TCTACCAAGTTTGGGGC----ACCCCTTCCAAAAAAATTTGAAAAAATCCCAAACCACAAAAAGA
*
11649151 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGG
517 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAAG
11649216 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
582 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
* * * *
11649281 AAACCAACCTACCACCCTATCGATTCACAGCTTGCGCATCCCGTCTCTCTGGCTGGAGTAGTGCC
647 AAACCAACCTACCACCCTACCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCGGGAGTAGAGCC
*
11649346 CACCTGCCCGCTCGTTTTGTTA
712 CACCCGCCCGCTCGTTTTGTTA
11649368 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
1 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
** * * *
11649433 CGGACCAGA-CTGAGGGTTGCGGTAGCACATGTTACGCTCGGGAATGTGTTGGTGGCGCATTTTT
66 CGGACCAGATC-GAGGGTTGCGACAGCACATGCTACGCTCGGGAATGTGCTGGTGCCGCATTTTT
* * * *
11649497 CTTCACCGGGGCACCA-CTGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
130 CTTCACCGGGGCACCATC-ACCAGAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGA
11649561 CGATC-GGGGGGC-CGGGGGGTGTGT-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
194 CGATCGGGGGGGCTCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
11649623 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTT
259 ATTGGCCCCATATCCCGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
11649687 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
324 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
11649752 AATCTTGTACACTTCGAGTTTTTAGCTAAATAT-TTTTGTGCATGCCAACAAAAATACAGGGATC
389 AATCTTGTACACTTCGAGTTTTTAGCTAAAT-TGTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
11649816 ACGTCTACCAAGTTTGGGGC-CTCCTTCCAAAAAAAATTTTAAAAAATCCCAAACTACAAAAAGT
453 ACGTCTACCAAGTTTGGGGCACCCCTTCC-AAAAAAATTTGAAAAAATCCCAAACCACAAAAAGA
** * *
11649880 TTTGAAAATCGTGAAAAATAGAAAACTG-GTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAA
517 TTCAAAAATCGTGAAAAATAGAAAAC-GAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAA
11649944 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
581 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
* * ** *
11650009 TAAACCCACCTCCCACCCTACCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCGGGCGTAGAGC
646 TAAACCAACCTACCACCCTACCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCGGGAGTAGAGC
*
11650074 CCGCCCGCCCGC
711 CCACCCGCCCGC
11650086 CCGCCTGCTC
Statistics
Matches: 657, Mismatches: 56, Indels: 18
0.90 0.08 0.02
Matches are distributed among these distances:
728 7 0.01
729 213 0.32
730 1 0.00
733 145 0.22
734 95 0.14
735 11 0.02
736 9 0.01
737 176 0.27
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (733 bp):
GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
CGGACCAGATCGAGGGTTGCGACAGCACATGCTACGCTCGGGAATGTGCTGGTGCCGCATTTTTC
TTCACCGGGGCACCATCACCAGAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACG
ATCGGGGGGGCTCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCATATCCCGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCACCCCTTCCAAAAAAATTTGAAAAAATCCCAAACCACAAAAAGATTCA
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAAGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
CAACCTACCACCCTACCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCGGGAGTAGAGCCCACC
CGCCCGCTCGTTTTGTTA
Found at i:11650098 original size:737 final size:737
Alignment explanation
Indices: 11648609--11650141 Score: 2293
Period size: 737 Copynumber: 2.1 Consensus size: 737
11648599 GGCGGCTGAG
* **
11648609 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCCTGCTCGTTTCGTTAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
11648674 GAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCACATGCTAGGCTCGGGC
66 GAGTTCATTCCCAGCCTAAGATCGGACCAGATCGAGGGTTGCGACAGCACATGCTACGCTCGGGA
** *
11648739 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGTATCGCCGGAGAACCTAAC
131 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCAGAGCATCGCCGGAGAACCTAAC
* * *
11648804 CGACGGCATTGGGGTTCTGACGATCGGGGGGGCTGGGGGGGTGTGTGCACATGATGTGGGATGGG
196 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCTCGGGGGGTGTGTGCACATGATGTGCGATGGG
* *
11648869 TGCTGGTACTTGGCCCTTTTATTGGCCCCATATCTCGCATCAAACCTCGAGAACTCACACCCCCT
261 TGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCGCATCAAACCTCGAGAACTCACACCCCCT
11648934 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
326 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
11648999 TTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
391 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCATGC
* * *
11649064 CAGCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACCCCTTCCGAAAAAATTTGAG
456 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC----ACCCCTTCCAAAAAAATTTGAA
*** * *
11649129 AAAATCTTGAGCCGCAAAAAGATTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
517 AAAATCCCAAACCACAAAAAGATTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
11649194 AACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
582 AACTTCACGAGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
11649259 GTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATTCACAGCTTGCGCATCCCG
647 GTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTACCGATCCACAGCTTGCGCATCCCG
* *
11649324 TCTCTCTGGCTGGAGTAGTGCCCACC
712 TCTCTCTGGCGGGAGTAGCGCCCACC
* * *
11649350 TG--C-CC-GCTCGTTTTGTTAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCCTGCTCGTTTCGTTAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** *
11649411 GAGTTCATTCCCAGCCTAAGATCGGACCAGA-CTGAGGGTTGCGGTAGCACATGTTACGCTCGGG
66 GAGTTCATTCCCAGCCTAAGATCGGACCAGATC-GAGGGTTGCGACAGCACATGCTACGCTCGGG
* * * * * *
11649475 AATGTGTTGGTGGCGCATTTTTCTTCACCGGGGCACCA-CTGCCGGAGCATCGTCGGAGAACCTG
130 AATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC-ACCAGAGCATCGCCGGAGAACCTA
11649539 ACCGACGGCATTGGGGTTCCGACGATC-GGGGGGC-CGGGGGGTGTGT-CACATGATGTGCGATG
194 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTCGGGGGGTGTGTGCACATGATGTGCGATG
* *
11649601 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
259 GGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCGCATCAAACCTCGAGAACTCACACCCC
11649666 CTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
324 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
11649730 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATAT-TTTTGTGCA
389 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAT-TGTTTTGTGCA
* * *
11649794 TGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGC-CTCCTTCCAAAAAAAATTTTAA
453 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCACCCCTTCC-AAAAAAATTTGAA
* * ** *
11649858 AAAATCCCAAACTACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACTG-GTTGTCTTGCCATG
517 AAAATCCCAAACCACAAAAAGATTCAAAAATCGTGAAAAATAGAAAAC-GAGTCGTCTTGCCATG
*
11649922 AAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
581 AAACTTCACGAGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * **
11649987 CGTAGAAATATGAAGATGTGCCTAAACCCACCTCCCACCCTACCGATCCATGGCTTGCGCATCCC
646 CGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTACCGATCCACAGCTTGCGCATCCC
* *
11650052 GTCTCTCTGGCGGGCGTAGAGCCCGCCCGCC
711 GTCTCTCTGGCGGGAGT--AG--CGCCCACC
*
11650083 CGCCCGCCTGCTCGTTTCG-TCGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CGCCCGCCTGCTCGTTTCGTTAG-TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
11650142 ATCTGACGGG
Statistics
Matches: 714, Mismatches: 64, Indels: 32
0.88 0.08 0.04
Matches are distributed among these distances:
728 7 0.01
729 199 0.28
730 1 0.00
731 2 0.00
733 152 0.21
734 95 0.13
735 12 0.02
736 13 0.02
737 230 0.32
738 1 0.00
739 1 0.00
741 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (737 bp):
CGCCCGCCTGCTCGTTTCGTTAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGCCTAAGATCGGACCAGATCGAGGGTTGCGACAGCACATGCTACGCTCGGGA
ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCAGAGCATCGCCGGAGAACCTAAC
CGACGGCATTGGGGTTCCGACGATCGGGGGGGCTCGGGGGGTGTGTGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCGCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCACCCCTTCCAAAAAAATTTGAAAAAA
TCCCAAACCACAAAAAGATTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGAGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
AAATATGAAGATGTGCCTAAACCAACCTACCACCCTACCGATCCACAGCTTGCGCATCCCGTCTC
TCTGGCGGGAGTAGCGCCCACC
Found at i:11650379 original size:159 final size:159
Alignment explanation
Indices: 11650085--11650459 Score: 484
Period size: 159 Copynumber: 2.4 Consensus size: 159
11650075 CGCCCGCCCG
* * *
11650085 CCCGCCTGCTCGTTTCGTCGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACG
1 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACG
* * *
11650150 GGACTGAGGGTTGCGGCAACAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCTCCGGCTTG
66 GGACTGAGGGTTACGGCAACAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTA
* * * *
11650215 CGCATCCTACCCCTCTAGTCGGCTGAGCG
131 CGCATCCCACCCCTCTAGCCGACTGAGCA
* * * * ** *
11650244 CCCGTATGCTCGTTTCGTGGGTCGACTTTGGCATACAGAGTTCATTCTGAGTTTAAGATC-GAAT
1 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTG-A-
* * *
11650308 C-GGACTGAGGGTTACGGCAATAGGATCGACAGCACGCATAGGGGGACCCGACCGATCCCCTGCT
64 CGGGACTGAGGGTTACGGCAACAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * *
11650372 TATGCATCCCGCCCCTCTGGCCGACTGAGCA
129 TACGCATCCCACCCCTCTAGCCGACTGAGCA
* * *
11650403 CCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
11650460 CATACAGAGT
Statistics
Matches: 181, Mismatches: 33, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
158 1 0.01
159 179 0.99
160 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.23
Consensus pattern (159 bp):
CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACG
GGACTGAGGGTTACGGCAACAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTA
CGCATCCCACCCCTCTAGCCGACTGAGCA
Found at i:11650469 original size:26 final size:26
Alignment explanation
Indices: 11650433--11650485 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11650423 GTTGACTTAG
*
11650433 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11650459 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11650485 G
1 G
11650486 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11651346 original size:26 final size:26
Alignment explanation
Indices: 11651316--11651368 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11651306 GTTGACTTAG
11651316 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
11651342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
11651368 G
1 G
11651369 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:11653154 original size:26 final size:26
Alignment explanation
Indices: 11653118--11653167 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11653108 GACTTAGGCG
11653118 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
11653144 TACGGAGTTCATTCCCAGTTTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
11653168 ATCAGACCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:11653571 original size:902 final size:901
Alignment explanation
Indices: 11650329--11658254 Score: 9483
Period size: 905 Copynumber: 8.9 Consensus size: 901
11650319 TTACGGCAAT
* * * * **
11650329 AGGATCGACAGCACGCATAGGGGGACCCGACCGATCCCCTGCTTATGCATCCCGCCCCTCTGGCC
1 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
11650394 GACTGAGCACCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
11650459 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGATTGCAACAGCACATGCTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
11650524 CTCGGGAATGTGTTGGTGCTACATTTTTCTTCATCGGGGCACCATCGCCGGAGTATCGCTGGAGA
196 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
11650589 ACCTGACCGACGGCATTGTGGTTCCGGTGATCGGGGGGGCCGGGGTGGGGTGTGCGCACAAGATG
261 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GG-GGGGTGTGCGCACATGATG
* * *
11650654 TGCGATGGGTGCTGGTCCTTGGCCCTTATATTGGCCCCTTATCACC-CATCAAACCTCAAGAACT
323 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAACCTCGAGAACT
* *
11650718 CACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGA
387 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
11650783 AATGGGGACACCTGTATCAAATGGTCACAAAATCTTG-ACCACTTCGAGTTGGTTAGGCTGAATT
452 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-CACTTCGAGTT-TTTA-GCTGAATT
* * * *
11650847 TTTTTGTGCATGCC-A-AAAAATA-AGATGGATCATGT-TGCCATGTTTGGTGCC-AAACT-C-T
514 TTTTTGTGCATGCCAACAAAAATACA-A-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* ** ** * *** *
11650905 TCACACAAAATTTTAAAAAATCCCCAA-CTGTAGAA-TTT--AAAATCGTG--GGCTAGACCCAC
577 TCA-AAAAAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGA---AA
* * ** *
11650964 ATGAGTCGT-TTG-CATG--ACTT-ACGT-TAGGCTTAAGGGACCATT-T-CCAATCTTACAAGG
638 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT-TTACAAGC
* * * * *
11651021 C--AGAAAT--CATTGGCA-GTAGAAATATGAAGAT-T-CCT-AACCGACCTACCA---GATTGA
702 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * ** * *
11651075 TCCATGACTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGGCCCCGTTGCCAGCTCG-CCGCTCG
767 TCCACGACTTGCGCATCCCGTCTCTCTGGC-CGCGTAGT-GCCCC-CCGCCCGCCCGCCCGCTCG
* * ** * ***
11651139 TTTTGTCGGTTGGCTTAGGCATACACAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTT
829 TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTT
**
11651204 GCATTAGC
894 GCAGCAGC
** * * * * *
11651212 AGGATCGGCAGCACGTGGAGGGGGA-CTGGCCGATCCTCGACTTATG-GCATCCCGCCACTCTAG
1 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGC-T-TGCGCATCCCGCCCCTCTGG
* * * *
11651275 CCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCT
64 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * **
11651340 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGGCATTACATGCTG
129 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTG
* * **
11651405 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGA
194 GGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * * * * * *
11651470 GAACTTGACCGATGACGTTGGGGTTTCGACGATC-GAGGGGCCGGGGGGTGTGCACACAAGAT-T
259 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
11651533 GTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTACCCCTCATCAAACCTCGAGAACTAA
324 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
11651597 CACTCCCTTAAAGAGCGTTTGAGATTTTACAGTTTTGCTACCAGTAGCAATTAAAGTGTCTGAAA
389 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
11651662 TGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
454 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
11651727 GTGCACGCCAACAAAAATAGAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTAAAA
519 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAA
* * * * * *
11651791 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTCCAAAATTGTGAAAAATAGAAAATGAGTCATC
583 AAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
11651856 CTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCGATAAAAATGG
648 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
11651921 CATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
713 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * * * *
11651986 CGCATCCCGTCTCTCTGGCCGACATAGTG---CCCACCTGCCCGCCCGCTCATTTTGTCGGTTGG
778 CGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGG
* * * *
11652048 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAAC
842 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAG-CAGC
* * * *
11652108 AGGATCGACAGCACACAAAGGGGGACCCGGCCGATCCCCGGCTTGCCCATCCCGCCCCTCTGGCC
1 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * *
11652173 GGCTGGGTAACCGGACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
11652238 GCATA-GCAGTTCATTCCCAGTCTAAGATTGGACTAGATCGAGGGTTATGGCAGCACATGCTGCG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11652302 CTCGGGCAT-T-TATGGTGCCGTATTTTTCTTCGTCGGGGCACCATC-ACTGGAGCATCGCAGGA
196 CTCGGGCATGTGT-TGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGCCGGA
* * * *
11652364 GAACCTGACCGGCGACATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGTATGCGCACATGA
259 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTG--TGCGCACATGA
* * * *
11652429 TGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCACTCATCAATCCTCCAGAAC
321 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
11652494 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
386 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
11652559 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGAAGTTT
451 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
11652624 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTTCGA
516 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAA
11652689 AAAAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
581 AAAAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
11652754 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAAT
646 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
11652819 GGCATTGGCATGCAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCTATCGATCCACGACT
711 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
* * **
11652884 TGCACATCCCGTCTCTTTGGCCAGCGTAGT-CCCCCCTGCCCGTTCGCCCGCTCGTTTCGTCGAT
776 TGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCCCC-GCCCGCCCGCCCGCTCGTTTCGTCGAT
* * * * *
11652948 TGGCTAAGGCATAAGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGC
839 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAGCAGC
* * * * * *
11653011 AAGATTGGTAACACACAGTGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
1 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
11653076 GGCTGAGCACACGCACGCTCCTTTCGTGCGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11653141 GCATACGGAGTTCATTCCCAGTTTAAGATCAGACCCGACCGAGGGTTGCGACAACACATGCTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *** * * *
11653206 CTCGAGCATGTGTTGGTGCCGCATTTCTCTTTGCCGGAGCACCATCGTCGGAGCATTGTCGGAGA
196 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
11653271 ACCTGACCGACGGCGTTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
261 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
11653336 AATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTTGAGAACTCACA
326 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
11653401 CCCCATTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
391 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
11653466 GGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTAAGCTAAATTTTTTTAT
456 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
11653531 GCATACCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAA
521 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
* *
11653596 TTTTAAAAAAT-CTCGAA-CTGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTAT
586 TTTTAAAAAATCCT-GAACCT-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * ***
11653659 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAGGCCATAAAAATCAA
649 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
11653724 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGACTTTC
714 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
* * * * *
11653789 GCATCCCGTCTCTCTGGTCGGTGTAGTGCCCGCCCGCCTGCCCGCCCGCTGGTTTTGTC-AGTTG
779 GCATCCCGTCTCTCTGG-CCGCGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGA-TTG
* * *
11653853 ACATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGCAGC
841 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAGCAGC
* *
11653914 AGGATCGGTAGCACGCAG-TGGGGA--C--CCGA-------C---CG-AT-------C-C---CC
1 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
11653952 GACTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
11654017 GCATATGGAGTTCATTCCCAGTCTAAAATCAGACCGGACCAAGGGTTGCGGTAACACATGCTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
11654082 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCACCGGGGTACCATTGTCGGATCATCGTCGGAGA
196 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * ** *
11654147 ACCTGACC-AGCGGCATTGGGGTTCCTGCAAT-TGGGGGGCCCAGGGGTGGGCGCACATGATGTG
261 ACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
11654210 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCAC
325 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
11654275 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
390 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11654340 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
455 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
11654405 TGCATTCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCCTTCCAAAAAA
520 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
* * * **
11654470 ATTTAAAAAAATCCCGAACCGT-AAAAAGTTTTC-AAAATCGTGAAAAAAAGAAAAAAAGTCGTC
585 ATTTTAAAAAATCCTGAACC-TCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
11654533 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGAATGTATTTACAAGCCATAAAAGTGG
648 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * ** *
11654598 CATTGGCACATAGAAATATGAAGATGTTCTTAAAGCCACCTATGACCCTATCGATCCACGGCTTG
713 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * * * *
11654663 CGCATCCTGTCTCTCTGGCCAGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCATTCCGTTGGTTG
778 CGCATCCCGTCTCTCTGGCC-GCGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGATTG
* * * * ** ** *
11654728 GCTTAGGCATACGAAATTTATTCCTAGTCTAAGATTGGACTGGACTGAGGGTTGCAGCAGT
841 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAGCAGC
* * * * *
11654789 AGGATCAGCAGCATGCAGAGGGGGACCCGACCGAACCCCGGCTTGCGCATCCTGCCCCTCTGGCC
1 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
11654854 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11654919 GCATACGGAGTTCATTCGCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGCAGCACATGCTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
11654984 CTCGGGCAAGTGCTGGTGCAGCATTTTTCTTCATCGAGGCACCATCGTCGAAGCATCGCCGGTGA
196 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
11655049 ACCTGACCGACAGCATTGGGGTTGCGGCGATCGGGGGGACCAAGGGGGCTGTTCGCACATGATGT
261 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
11655114 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
324 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
11655179 CTCCCCCTTAAAGAGTATTTGAGATTTTATAGATTTGCTGCCAGTAGCCATTAAAGTGT-TCGAA
389 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAA
*
11655243 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTT
453 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
11655308 CGTGCATGCCAACAAAAATACAATGATCATGGCTA-GATAGTTTGTGGCCAAAACTCC-TTCTGA
518 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTTC-AA
* * * * * *
11655371 AAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCGAAAAGCATGAAAAATAGAAAACGAGTTG
581 AAAAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
11655436 TCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCACAAAAAT
646 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
11655501 GGCATTGGCATGCAGAAATATGAAGGTGTGCCTAAACCCACCGACCACCCTATCGATTCACGGCT
711 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
** * * *
11655566 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCATGCCCACCCGCTCGTTTCATTGAT
776 TGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGAT
* * *
11655631 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-TCGGATCGAGGGTTGC-G-ATGG
839 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCAAGGGTTGCAGCA--G
*
11655693 T
901 C
* * * * *
11655694 AGGATCGGTAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGTATCCCACCCCTCTGGCT
1 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
11655759 GGCTTAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11655824 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGGTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
11655889 CTCGGGCATGTGCTGGTACCACATTTTTCTTCGTCGGGGCATCATCGCCGGAGCATTGCCGGAGA
196 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * *
11655954 ACCTAACGGGCGACATTGGGGTTCTGGCGATCGGGGAGGCTGGGGGGTGTGCGCACATGATGTGC
261 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
**
11656019 GATGGGTGCTGGTACTTGGCCCTTATATTGTTCCCCTATCCCTCATCAAACCTCGAGAACTCACA
326 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
11656084 CCCCCTTAACGAGCATTTGAGAGTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
391 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
11656149 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
456 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * * * *
11656214 GCATGCCAACAAAAATACAAGCATGACGTCTACAAAGTTTGGGGCAAAAAGTCCATCCGAAAAAA
521 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
* * * * *
11656279 TTTT-TAAAATCCTGAACCGCAAAAAATTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
586 TTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * * *
11656343 CCATGAAACTTCACGCGAAGGCTTAAAGGACCATTGTGTAAATTTACAAGCTATAAAAATGGCAT
651 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
11656408 TGGCATGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATTG-CTTGTG
716 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGACTTGCG
* * * * * * * *
11656472 AATTCCGTCTCTCTGGCCGATGTAGT-------GCCCGCCCGCTCACTCATTTTGTCGGTTGGCT
780 CATCCCGTCTCTCTGGCCG-CGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCT
* * * * * *
11656530 TAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACTAAGGGTTGCCA-TAGG
844 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTG-CAGCAGC
* * * * ** * * *
11656588 AGGATCGACAGCATGCAAAAGGGGACCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCT
1 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
11656653 GGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
11656718 GCATACGAAGTTCATTCCCAGTCCAAGATCGAACCAGACCGAGTGTTGAGGCAGCACATATTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11656783 CTTGGGAATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCG-C----CA------GAGA
196 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** ** * * * *
11656837 ACCTAACTAACGGCATTGGGGTTCCATCGATCGGGGGGGTCGGGGGGTCTGTGCACATGATTTGC
261 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * *
11656902 GATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCACTTACCAAACCTTGAGAACTCACA
326 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
11656967 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATG
391 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
11657032 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
456 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
11657097 GCATGCCAACAAAAATACAGGGATCACGTCTACCAAG-TTGGGGCCAAAACTCCTTGCAAAAAAA
521 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
*
11657161 TTTTAAAAAAT-CTCGAACCGT-AAAAAGTTT-AGAAAATCGTGAAAAATAGAAAACGAGTCCTC
586 TTTTAAAAAATCCT-GAACC-TCAAAAAGTTTCA-AAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11657223 TTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
648 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
11657288 CATTGGCAAGCACAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTA
713 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * *
11657353 CGTATCCCATCTCTCTGGCTGGCGTAGTG---CCCGCCCGCCCGCCCGCTCGTTTCGT-TAGTTG
778 CGCATCCCGTCTCTCTGGC-CGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGA-TTG
* * * *
11657414 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGGCTAAGGGTTGCGGCAGC
841 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAGCAGC
* * * ** * * ** *
11657475 AGGATC-GTAGCACGTAGAGTGGGACCCGGTTGATGCCCGACTTATGCATCCTGCCCCTCTGGCC
1 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
11657539 AGCTGAGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
11657600 -C-TA---AG---A-T--C-G-----GA---G--CAGACCGAGGGTTGTGGCAGCACATGCTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
11657643 CTCGAGCATGTGTTGGTGTC-AATTTTTTCTTCGT-GAGGCACCATCGTCAGAGCATCGCCAGAG
196 CTCGGGCATGTGTTGGTGCCGCA-TTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
* *
11657706 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGGTGAGCGCACATGATGT
260 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGT
* * * *
11657771 ACGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAGTCA
324 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
11657836 CACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTG-TAGCCAGTAGCCATTAAAGTGTCTGAA
389 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAA
* * *
11657900 ATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAAATTTTT
453 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
11657965 TGTGCATGCCAACAGAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAA
518 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAA
* * * *
11658030 AAATTTAAAAAAATCCTGAGCCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
583 AAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11658095 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
648 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
11658160 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATTCATGGCTTG
713 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
*
11658225 C-CTATCCCGTCTCTCTGGCCGGCATAGTGC
778 CGC-ATCCCGTCTCTCTGGCC-GCGTAGTGC
11658255 TTGGCTGCCT
Statistics
Matches: 6093, Mismatches: 796, Indels: 318
0.85 0.11 0.04
Matches are distributed among these distances:
859 12 0.00
860 55 0.01
864 2 0.00
865 2 0.00
870 40 0.01
871 236 0.04
872 218 0.04
873 4 0.00
874 2 0.00
875 562 0.09
876 223 0.04
877 146 0.02
878 40 0.01
879 43 0.01
880 14 0.00
881 4 0.00
882 57 0.01
883 696 0.11
884 7 0.00
885 4 0.00
886 102 0.02
887 87 0.01
888 19 0.00
889 10 0.00
890 5 0.00
891 8 0.00
893 10 0.00
894 368 0.06
895 75 0.01
896 180 0.03
897 25 0.00
898 15 0.00
899 35 0.01
900 446 0.07
901 8 0.00
902 840 0.14
903 556 0.09
904 82 0.01
905 853 0.14
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
TTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
ATCCCGTCTCTCTGGCCGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAGCAGC
Found at i:11654020 original size:26 final size:26
Alignment explanation
Indices: 11653991--11654042 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11653981 GTTGACTTAG
*
11653991 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11654017 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11654043 AATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11654923 original size:26 final size:26
Alignment explanation
Indices: 11654893--11654945 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11654883 GTTGACTTAG
11654893 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11654919 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11654945 G
1 G
11654946 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11655834 original size:26 final size:26
Alignment explanation
Indices: 11655798--11655850 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11655788 GTTGACTTAG
11655798 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11655824 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11655850 G
1 G
11655851 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11658338 original size:26 final size:26
Alignment explanation
Indices: 11658299--11658354 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
11658289 TGGGTTGACT
*
11658299 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
11658325 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
11658351 TAAG
1 TAAG
11658355 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:11660979 original size:26 final size:26
Alignment explanation
Indices: 11660948--11661000 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11660938 GTTGACTTAG
11660948 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
11660974 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11661000 G
1 G
11661001 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11664226 original size:901 final size:900
Alignment explanation
Indices: 11660073--11667864 Score: 10056
Period size: 905 Copynumber: 8.6 Consensus size: 900
11660063 GTTGACTTAG
*
11660073 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
11660138 CTC-AGGCATGTGCTGGTGCCGT-ATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCACCGGA
66 CTCGA-GCATGTGCTGGTGCC-TCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * * *
11660201 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-AGGGGGTC-GGGGGGTGTCCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
11660264 TGCAATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
11660329 ACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
11660394 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * ** *
11660459 TGTGCATTCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGTGAAAACTCCATCCAAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* ** * *
11660524 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAAAGAAAACAAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
11660589 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGTATTTACAAGCCATAAAAGTGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
11660654 CATTGGCACACAGAAATATGAAGATGTGCTTAAAGCCACCTATCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
11660719 CGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCACTCGCCCGCCCGCTCATTTCGTTGGTT
649 CGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCG--C-C-CGCCCGCCCGCTCATTTCGTCGGTT
* * * * ** *** * *
11660783 GGCATAGGTATACGGAA-TTTATTCCTAGTCTAAGATTGGAATGGACTGAGGGTTAC-AGCAGTA
709 GGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGA-CAGCA
* * * * * * *
11660846 GGATC-AGCAGCACGCAGAGGGAGACCCGGCTGA-ACCCGGTTTGCGCATCCTGCCCCTCTGGCC
772 GGATCGA-CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
11660909 GGCTGAGCGCCCGTACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
11660974 GCATACGGAGTTCATTCGTAGTCTAAGATCGGATCAGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * **
11661039 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCATCGGGGCACCATCGTCGAAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * * *
11661104 ACCTGACAGGCAGCATTTGGGTTCCGGCGATCGGGGGGGCCAAGGGGGCTGTTCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
*
11661169 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * ** *
11661234 CTCCCCCTT-AAGAGTATTTGAGATTTTACAGATTTGCTGCCAGTAAACATTAAAGTGTCCGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** *
11661298 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAATTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
11661363 GTGCATGCCAACAAAAATACAATGATCACGTCTA-GATAGTTTGTGGCCAAAACTCCTTCTAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCAAAA
** * * * *
11661427 AAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAAGCATGAAAAATAGAAAACGAGTTGTC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
11661492 CTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCGTTGTATGAATTTACAAGCCACAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
11661557 CATTGTCATGCAGAAATATGAAGGTGTGCCTAAGCCCACCGACCACCCTATCGATTCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
11661622 CGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCACACGCCCACCCGCTCGTTTCATTGATTG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-C-CGCCCGCCCGCTCATTTCGTCGGTTG
* * ** *
11661687 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTACGGTAGTAGGA
710 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGA
* ** ** * ** * * * *
11661752 CCGGTAGCACGTAAAGGGGGACCC-ATCCGATCCCCCACTTGCGTATCCCGGCCCTTTGGCTGGC
775 TCGACAGCACACAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
11661816 TCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCACTAATACGGAGTTCATTCCCAATCTA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG--C--ATACGGAGTTCATTCCCAGTCTA
11661881 A
900 A
* * * *
11661882 GCCATATGGATTTCAATTCCCA-TCTAAAAGATC-GATCGGACCGAGGGTTACGGCAGCACATGC
1 G-CATACGGAGTTC-ATTCCCAGTCT--AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
*
11661945 T-GGCTCGGGCATGGTGCTGGTGCCGAT-ATTTTCTCTTCGT-GTGGGCACCATCGCCCGGAGCA
62 TGGGCTCGAGCAT-GTGCTGGTGCC--TCATTTT-TCTTCGTCG-GGGCACCATCG-CCGGAGCA
* * * * *
11662007 TTGCCGGAGAA-CTGGACGGGC-GCATT-GGG-TCTGGCGATCGGGGGGG-CGGGGGTGTGTTGC
121 TCGCCGGAGAACCT-GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG-TGC
* * *
11662067 GCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGTTCCCACTATCCCTCATCAAAC
184 GCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG-GCCCCCTATCCCTCATCAAAC
* *
11662131 CTCGAGAAC-CACA-CCCCTTAAAGAAGCATTTGAGAAGTTTACAGGTTCTGGCCTGCCGAATAG
248 CTCGAGAACTCACACCCCCTTAAAG-AGCATTTGAG-ATTTTACAGGTT-T-G-CTGCC-AGTAG
*
11662194 CCATTAAAGTGTCTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
307 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
11662259 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGCATGAC-TCTACCAAGTTTGGGGC
372 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * *
11662323 CAAAAGTCCATCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAATTTCAAAAATCATGAAAA
437 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * * * *
11662388 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAAGGACCATTGTGTAAATTT
502 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
**
11662453 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACTAACCTACCACCC
567 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * *
11662518 TATCGATCCATGGCTTGTGAATCCCGTCTCTCTGGCCGATGTAGT----GCCCGCTCGCTCGCTC
632 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTC
* * * **
11662579 ATTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACTAAGGGT
697 ATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * * * * * *
11662644 TGCCATAGTAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCTGCC
762 TACGACAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* *
11662709 CCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
827 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
11662774 CCAGTCTAA
892 CCAGTCTAA
** * * * * ** *
11662783 GCATAAAGAGTTTATTCCTAGTCTAATATCAGACCGGACCGAGGGTTGCATCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
11662848 CTCGAGCATTTGCTGGTGTCTCATTTTTCCTCGTCAGGTCACCATCGCTGGAGCATCGTCGGAAA
66 CTCGAGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
11662913 ACGTGATCGGCAGCATTGGGGTTCCGTCGATCGGGGGGGCCGGGGGGGTGTGCGCAGATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
11662978 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCAC
196 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
11663043 ACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11663108 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTCGCTGAATTGTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT-
* * *
11663173 TGTG--TGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCTAAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * *
11663236 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAAAGAGTCAT
454 AAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
11663300 CTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATCAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
11663365 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
11663430 GCGCATCCCGTCTCTAC-GGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGC
648 GCGCATCCCGTCTCT-CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
* * * *
11663494 TTAGGCATACTG-AGTTCATTCCCAGTTTAAGATCAGACTAGACCGAGAGTTACGATAGCAGGAT
712 TTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGAT
** * * * * * * *
11663558 CGGTAGCACATAAAGGGGGACTCGACCGATCCCCAGCTTGTGCATCCTGCCCCTCTGGCTGGCTG
776 CGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
11663623 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
11663683 GCATACGGAGTTCATTCCTAGTCTAATATCAGACCGGACCGAGGGTTGCGTCAACACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
11663748 CTCGAGCATTTGCTTGTGTCTCATTTTTCCTCGTCGGGTCACCATCGCCGGAGCATCGTCGAAAA
66 CTCGAGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
11663813 ACGTGATCGGCGGCATTGGGGTTCCGTCGATCGGGGGGGGCCGGGGGGGTGTGCGCAGATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
11663878 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCA
195 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
11663943 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
11664008 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCTAGTTTTTAGCTGAATTTTTCT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * **
11664073 ATGCATGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * * *
11664138 AATTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAATTTGAAAATGAGTCATCT
455 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
11664203 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTTTATGAATTTACAAGCCATAACAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** * * *
11664268 ATTGGCACATAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGAGCCACGGCTTGT
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
11664333 GCATCCCGCCTATCTGGCC-AGCTTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
650 GCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
* * * * *
11664397 AGGCATACGAAGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTATGGCAGCAGGATCGA
714 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGA
** * ** * * *
11664462 CAGCACACAGAGGGGGACCCGATTGATCCCCGGTTTGCGCATCCTACCCCTCTGGCCGACTAAGT
779 CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
11664527 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAATGAAGTTCATTCCTAGTCTAA
844 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11664584 GCATACGGAGTTCATTCCCACTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11664649 CTCGAGTATGTGCTGGTGCCACATATTTCTTCGTCGAGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* ** * * *
11664714 ACCAGACCAACGGCATTGGGGTTTCGACAATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
11664778 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCAC
196 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
11664843 ACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTTTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11664908 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
11664973 TGCATGCCAAAAAAAATACAAGGATCACATCTACCGAGTTTGGGGCCAAAACTCGTTTCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
11665038 ATTTTAAAAAA-CCCGAACC-TCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAGCGAGTCATCT
456 ATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
11665101 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGA
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
11665166 ATTGGCATGTGGAAATATGAAGATGTGCCTAAACCTACTTACCGCCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * ** *
11665231 GCATCTGGTCTCACTGGCCGGTGTAGTGCCCGCCCACCCGCCCGCCCGCCCATTCGTTTCGTCGG
650 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCCCG--C--TCATTTCGTCGG
* * * * * *
11665296 TTGGCTTAGGCATACGCAGTTCATTCCCACTCTAAGATCAGATCAAACCGAGGGTTA-TAGCAAC
707 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGA-CAGC
* *** *** * *
11665360 AAGATCGACAGCATGTAGAGGGGGACCCGGTTGATCCCCGACTTACGCATCCCGCCCCTCTGGCC
771 AGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
11665425 GGCTGAGCGCCCGCACGCGT-GTTTTGTGGGTTCATTTAGGCATACGGAGTTCATTCCCAGTCTA
836 GGCTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
11665489 A
900 A
* * *
11665490 GCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11665555 CTCTG-GCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCTGGAG
66 CTC-GAGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
*
11665619 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
11665683 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACATTGAGAACTCA
195 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
11665748 CACCCCCTTAAAGAGCATTTGAGGTTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
11665813 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
11665878 ATGCATGCCAA-AAAAATACAAGGATCAAGTCTACCAAGTTTGGGTCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
11665942 AATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATACAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
11666007 CGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
11666072 ATTGGCACGTAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
11666137 GCGTCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCATCCGCCCGCTCATTTCATCGGTTGG
650 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-C-CGC--CCGCCCGCTCATTTCGTCGGTTGG
* * *
11666202 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGTTCAGACCAGACCGCA-GGTTA-TAGCAGCAGG
711 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCG-AGGGTTACGA-CAGCAGG
* * * * *
11666265 ATCGATAGCACACAGAGGGGGACCCGACCAATCCCCGGCTTGCACATCCCGCCCCTCTAGCCGAC
774 ATCGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
11666330 TGAGCGCCCGCACGCTTGTTTCATGCGTTGACTTAGGCATATGGAGTTAATTCCTAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * **
11666392 GCATACGGAGTGCATTCCCAATCTAAGATCTGACTAGACTGAGGGTTTTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11666457 CTCGAGCATGTGCTGGTG-TTGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGAAG
66 CTCGAGCATGTGCTGGTGCCT-CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * *
11666521 AACCTGACCGACGGCATTGGGGTTTCGACGATCGGAGGGGTCCGGGGGGGGTGTGCACGCATGAT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGGCC-GGGGGGGTGTGCGCACATGAT
*** * *
11666586 GTATGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACT
193 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
11666651 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
11666716 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAAGCTGAATTGTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * ** *
11666781 TTGTGCATG-CAACAAAATTACAAGGATAATGTCTAGTAAGTTTGGGGCCAAAACTCTTTCCAAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * *
11666845 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAACATCGT-AAGAAATAGAAAACAAGTCG
453 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA-AAATAGAAAACGAGTCG
*
11666909 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
11666974 GGCATTGGCATGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
11667039 TGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCCGCCTGCCCGCCCACTCATTTCGTCAGT
647 TGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGCCCGCTCATTTCGTCGGT
* * * *
11667104 TGGCTTAGGCATACAGAA-TTCATTCCCAGTCTAAGAT-TGAACCAGATCGAGGGTTGCGGCAGC
708 TGGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTACGACAGC
* * * * * * *
11667167 AGGATCGGCAGCACACAGAGGGAGACCCGACCAATCTCCGGCTTGCGCATCCCACCCCTCTAGTC
771 AGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
11667232 GGTTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
836 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11667297 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11667362 CTC-AGGCATGTGCTCGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGAAG
66 CTCGA-GCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* ** * * * ** * * *
11667426 AACCTAATTGGCGGCATTTGGGTTCCGATGATCGGGGGGGTCGAAGGGGTGCGCGAACGTGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
11667491 CCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
11667556 CACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
11667621 TGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
11667686 GTGCATGCCAAAAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACACCTTCC-AAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * ** * *
11667750 AATTGTAAAAAATCCCGAACAGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCT
455 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
11667815 TGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACA
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
11667865 GGCCGTGCAT
Statistics
Matches: 6050, Mismatches: 733, Indels: 214
0.86 0.10 0.03
Matches are distributed among these distances:
895 100 0.02
896 254 0.04
897 34 0.01
898 196 0.03
899 398 0.07
900 422 0.07
901 966 0.16
902 341 0.06
903 775 0.13
904 210 0.03
905 989 0.16
906 740 0.12
907 11 0.00
908 49 0.01
909 100 0.02
910 68 0.01
911 16 0.00
912 25 0.00
913 249 0.04
914 107 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACA
GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11665503 original size:26 final size:26
Alignment explanation
Indices: 11665464--11665516 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11665454 GTTCATTTAG
*
11665464 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
11665490 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
11665516 G
1 G
11665517 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:11667307 original size:26 final size:26
Alignment explanation
Indices: 11667271--11667323 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11667261 GTTGACTTAG
11667271 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11667297 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11667323 G
1 G
11667324 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11668789 original size:26 final size:26
Alignment explanation
Indices: 11668752--11668805 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
11668742 GTTGACTTAG
*
11668752 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAATCTAA
* *
11668778 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTACCAATCTAA
11668804 GC
1 GC
11668806 GTGCGGGTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAATCTAA
Found at i:11669661 original size:26 final size:26
Alignment explanation
Indices: 11669625--11669677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11669615 CCAGTCTAAT
*
11669625 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11669651 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11669677 C
1 C
11669678 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11670392 original size:26 final size:26
Alignment explanation
Indices: 11670356--11670406 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11670346 CCAGTCCAAT
*
11670356 CTTAGTCTGGGAATAAACTCCGTATA
1 CTTAGACTGGGAATAAACTCCGTATA
*
11670382 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
11670407 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATA
Found at i:11671862 original size:26 final size:26
Alignment explanation
Indices: 11671826--11671876 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11671816 CCAGTCCAAT
*
11671826 CTTAGTTTGGGAATAAACTCCGTATA
1 CTTAGATTGGGAATAAACTCCGTATA
*
11671852 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGATTGGGAATAAACTCCGTAT
11671877 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (26 bp):
CTTAGATTGGGAATAAACTCCGTATA
Found at i:11673019 original size:737 final size:734
Alignment explanation
Indices: 11669298--11673679 Score: 5973
Period size: 736 Copynumber: 6.0 Consensus size: 734
11669288 AGAACTCGAT
* * * *
11669298 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGG
* *
11669363 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
66 CCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
* * *
11669428 TAGGGGGCTAATATAGGGGCCAAGTATC-AGCACCCATCGCACATCATGTGCGCACA-CCCCCTG
131 TAGGGGGCCAATATAAGGGCCAAGTA-CGAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* ** *
11669491 ---ATCG-TCG--GAACCCCAATGCCGTAGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCC
195 CCCATCGATCGCTGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
* *** * * *
11669550 CCGACGAAAAAAAATGTAGCACCAACACATAAC-CGAGTCCAGCATGTGCTGCCACAACCCTCAA
260 CCGATGAAAAAAAATACGGCACCAACACAT-GCTCGAGCCCAGCATGTGCTGCCACAACCCTCGA
* * * * *
11669614 TCCAGTCTAATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCC
324 TCCAGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * * *
11669679 TAAGTCAACCAATGAAACAAACGTGCGGGTGCTCAGCCGGCCAGAGAGCTGGGATGCGTAAGCTG
389 TAAGTCAACCCATAAAACGAACGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGTGCAAGCCG
* * * * * * * * * **
11669744 GGGACCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGTTGTCGCACCCCTTGGTCTGATCCAA
454 GGGATCGGTCGGGTCCCCCTCTGCGTACTGTCGATCCTGCTATCGCAACCCTCGGTCCGGTCTGA
* * **
11669809 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAATGAGCCAGCGGGC-G-G-G
519 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCTGGCGGGCGGCGAG
* * * * * *
11669871 TGGACACTACTTCAGCTAGAGAGACGGGATGTGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGT
584 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGT
* * * *
11669936 TTAGGCACATGTTCATATTTTTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGG
649 TTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
11670001 TCCCTTAAGCCTTCACGTCAA
714 TCCCTTAAGCCTTCACGTCAA
* * *
11670022 GTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCTCCATTTTATACACTTTAATGGCTGCTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGG
* * * *
11670087 CCACAAATCTGTAAAATCTCAAATGCTTTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
66 CCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
* *
11670152 TA-GGGGCCAATATAAGGGCCAAGTATGAGCACCAATCGCACATCATGTGCGCACACCCCCCGGC
131 TAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * *
11670216 CCATCTATCACCAGAACCCCAATGCAG-CTGGTTAGGTTCTCCGGTGATGCTCCTACGATGGTGC
196 CCATCGATC-GCTGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
* * ** *
11670280 CCCGGTGAAGAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTTGA
259 CCCGATGAAAAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGA
* *
11670345 TCCAGTCCAATCTTAGTCTGGGAATAAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCC
324 TCCAGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
11670410 TAAGTCAAACCATAAAACGAGCGTGCGGGTGCTCAACCGACCAGAGGGGTGAGATGTGCAAGCCG
389 TAAGTCAACCCATAAAACGAACGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGTGCAAGCCG
* * ** *
11670475 GGGATCGGTCGGGTCCCCTTCTGCGTACTGCCGATCCTGCTGCCGCAACCCTCGGTCCAGTCTGA
454 GGGATCGGTCGGGTCCCCCTCTGCGTACTGTCGATCCTGCTATCGCAACCCTCGGTCCGGTCTGA
** * * *
11670540 TCTTAGACTGGGAATGAACTTTGTATGCTTAAGCCAATCGATGAAACAAG-TGGGCGGGCGGGCG
519 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCT-GGCGGGC-GGCG
* * * * *
11670604 GGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCAATAGGATGGTAGGTGA
582 AGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGG
11670669 GTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
647 GTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
11670734 GGTCCCTTAAGCCTTCACGTCAA
712 GGTCCCTTAAGCCTTCACGTCAA
11670757 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGG
* * *
11670822 CCGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGATTTAATGAGGGA
66 CCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
11670887 TAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
131 TAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * *
11670952 CCCTCGATCGTTGCAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTCCGACGATCGTGCC
196 CCATCGATCGCTG-AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
*
11671017 CCGATGAAAAAAAATACGGCACCAACACATGCTCAAGCCCAGCATGTGCTGCCACAACCCTCGAT
260 CCGATGAAAAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGAT
* * * *
11671082 CCAGTCCGATCTTAGACTGGGAATAAACTCTGAATGCTTAGACTGGGAATGAACTCCGTATTCCT
325 CCAGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
11671147 AAGTCAACCCATGAAATGAACGTGCAGGTGCTCAACCGACCAGAGGGGTGGGATGCGCAAGCCGG
390 AAGTCAACCCATAAAACGAACGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGTGCAAGCCGG
** * * * * *
11671212 TTATCGATCGGGTCCCCCTCTACGTACTGTCGATCCTGCTATCGTAACCTTCGGTCTGGTCTGAT
455 GGATCGGTCGGGTCCCCCTCTGCGTACTGTCGATCCTGCTATCGCAACCCTCGGTCCGGTCTGAT
* * * * **
11671277 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCCGATGGGCGGACGAG
520 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCTGGCGGGCGG-CGAG
* * * *
11671342 CGGGCACTACGTCGACCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGT
584 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGT
*
11671407 TTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
649 TTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
11671472 TCCCTTAAGCCTTCACGTCAA
714 TCCCTTAAGCCTTCACGTCAA
* * *
11671493 GTGTACAAGATTTTGCGACCATTTCAAAAAAGTGTCTCCATTTTAGACACTTTAATGGCTGCTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGG
* *
11671558 CCGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTATGAGTTCTTGAGGTTTGATGAGGGA
66 CCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
* * *
11671623 TA-TGGGCCAATATAAGGGCCAAGTATGAGCACCCATCGCACATCATGTGCGCACACCCCCTGGC
131 TAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
*
11671687 CCATCTATCGCTGCAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
196 CCATCGATCGCTG-AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
* * * ** *
11671752 CCGGTG-AAAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTTGAT
260 CCGATGAAAAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGAT
** * *
11671816 CCAGTCCAATCTTAGTTTGGGAATAAACTCCGTATACTTAGATTGGGAATGAACTCCGTATGCCT
325 CCAGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* *
11671881 AAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGTGCAAGCCGG
390 AAGTCAACCCATAAAACGAACGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGTGCAAGCCGG
* ** ** **
11671946 GGATCGGTCGGGTCCCCTTCTGCGTACTGTCGATCCTGCTGCCGCAACCCTCGGTCCAATCCAAT
455 GGATCGGTCGGGTCCCCCTCTGCGTACTGTCGATCCTGCTATCGCAACCCTCGGTCCGGTCTGAT
* * * * * *
11672011 GTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGATGACACAAG-T---GGGC-G-G-GT
520 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCTGGCGGGCGGCGAGC
*
11672069 GGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCAATAGGGTGGTAGGTGGGTT
585 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTT
11672134 TAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
650 TAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
11672199 CCCTTAAGCCTTCACGTCAA
715 CCCTTAAGCCTTCACGTCAA
11672219 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGG
* *
11672284 CCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGATTTAATGAGGGA
66 CCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
11672349 TAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
131 TAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
* * *
11672414 CCCCTCGATCGCTGTAACCCCAATGCCGCCGGTCA-GTTCTCCGGTGATGCTCCGACGATCGTGC
195 CCCATCGATCGCTG-AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
* * * *
11672478 CCCGGTGAACAAAAATGCGCGCACCAACACATGCTCGAGCCCAGCATGTGCTGTCACAACCCTCG
259 CCCGATGAAAAAAAATACG-GCACCAACACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCG
* * * *
11672543 ATCCAGTCCGATCTTAGACTGGGAATAAACTGCGAATGCTTAGACTGGGAATGAACTCCGTATTC
323 ATCCAGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * *
11672608 CTAAGTCAACCCATGAAATGAACGTGCAGGTGCTCAACCGGCCAGAGGGGTGGGATGTGCAAGCC
388 CTAAGTCAACCCATAAAACGAACGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGTGCAAGCC
** * * * *
11672673 GGTTATCGGTCGGGTCCCCCTCTGCGTACTATCGATCCTACTATCGTAACCCTCGGTCTGGTCTG
453 GGGGATCGGTCGGGTCCCCCTCTGCGTACTGTCGATCCTGCTATCGCAACCCTCGGTCCGGTCTG
*
11672738 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCTGGCGGGCGGACG
518 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCTGGCGGGCGG-CG
* *
11672803 AGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
582 AGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGG
*
11672868 GTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATCCATACAAT
647 GTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
11672933 GGTCCCTGAAGCCTTCACGTCAA
712 GGTCCCTTAAGCCTTCACGTCAA
11672956 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGG
*
11673021 CCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGG
66 CCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
* *
11673086 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCTCG
131 TAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CG
* * * *
11673151 GCCC-CCTGATCGTTGGAACCCCAATG-C-T--GTC-GG-T-T-AGGT--T-CTCCGGCGATGGT
194 GCCCATC-GATCGCT-GAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGT
* * * * **
11673204 GCCCCAACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTC
257 GCCCCGATGAAAAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTC
* * * * *
11673269 -AGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTAT
322 GA-TCCAGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * ** ** *
11673333 GCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGCCGAGATGTGCAAG
386 GCCTAAGTCAACCCATAAAACGAACGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGTGCAAG
* * * * * * *
11673398 TC-GGGATCGATCGGGTCCCCCTCTTCATGCTGTCGAACCTGCTA-C-CTAACCCTCGATCCGGT
451 CCGGGGATCGGTCGGGTCCCCCTCTGCGTACTGTCGATCCTGCTATCGC-AACCCTCGGTCCGGT
* * * *
11673460 CTGATCTTAGACTGGGAAAGAACTCTGTACGCCTAAGCCAATCGACGAAAC-ATAC-GAGCGGGC
515 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA-GCTG-GCGGGC
* * * * *
11673523 TGGTGAGCGGGCAATACG-CTGGCCAGAGAGACGGGATGTGCAAGCCGTAGATCGATAGGGTGGT
578 -GGCGAGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGT
* * * **
11673587 AGGTGGGTTTTGGCA-ATACTT-ATATTTTTGCATAACCAATG-CATTTTTTTATTGGCTTGTAA
641 AGGTGGGTTTAGGCACAT-CTTCATATTTCTAC-TTGCCAATGCCA--TTTTTA-TGGCTTGTAA
*
11673649 ATT-ATAAAATGGT-CCTTAAGCCTTCACGTCA
701 ATTCATACAATGGTCCCTTAAGCCTTCACGTCA
11673680 GTTTTCATGG
Statistics
Matches: 3246, Mismatches: 364, Indels: 95
0.88 0.10 0.03
Matches are distributed among these distances:
723 48 0.01
724 141 0.04
725 163 0.05
726 321 0.10
727 251 0.08
728 76 0.02
729 255 0.08
730 6 0.00
731 309 0.10
732 1 0.00
733 6 0.00
734 265 0.08
735 389 0.12
736 656 0.20
737 336 0.10
738 22 0.01
739 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (734 bp):
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGG
CCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
CCATCGATCGCTGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC
CGATGAAAAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGATC
CAGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACCCATAAAACGAACGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGTGCAAGCCGGG
GATCGGTCGGGTCCCCCTCTGCGTACTGTCGATCCTGCTATCGCAACCCTCGGTCCGGTCTGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCTGGCGGGCGGCGAGCG
GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTCAA
Found at i:11673318 original size:26 final size:26
Alignment explanation
Indices: 11673282--11673334 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11673272 TCGGTCCAAT
11673282 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11673308 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11673334 C
1 C
11673335 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11674936 original size:26 final size:26
Alignment explanation
Indices: 11674906--11674958 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11674896 TCCGTCTGAT
11674906 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
11674932 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
11674958 C
1 C
11674959 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:11674936 original size:736 final size:740
Alignment explanation
Indices: 11673838--11675253 Score: 1918
Period size: 748 Copynumber: 1.9 Consensus size: 740
11673828 GTCTAAAAGT
*
11673838 GAAGTGTAAGATTTTGTGACTTTGAAAAAAAGTGGTCACCATTTTAGACATTTTATGGTCTGGTA
1 GAAGTGTAAGATTTTGTGACTTTGAAAAAAAGTGGTCACCATTTTAGACATTTAATGGTCTGGTA
* * *
11673903 GCAACTGATAAAATCTCAAATTCTTTTTAAGGGGTGTGAGTTTCGAGGTTTGGATGAGGGATAGG
66 GCAACTGATAAAATCTCAAATACTCTTTAAGGGGTGTGAGTTTCAAGGTTTGGATGAGGGATAGG
* **
11673968 GGGCTAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTCCCCGGCCTT
131 GGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTCCCCGGCCCC
* * * *
11674033 CCCGATCATCGGAACCCCAATGTCGTCGATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
196 CCCGATCATCGAAACCCCAATGTCGCCGATCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * *** *
11674098 AGCGAAGAAAAATGCGGCACAACACATGCCCAAGCCCAGCATGTGGTGCTGTAACCCTTGGACCG
261 AGCGAAGAAAAATGCAGCACAACACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGACCG
* * *
11674163 GTTCGATCTTAGACTGGGAATGAACTCCGTGTGCTTAGACTGGCAATGAACTCTGTATGCCTAAG
326 GTTCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAAG
* * * * * * *
11674228 TTAACCCACGAAACGAACGTGCGGGTGCTCAGCCGGCCAG-A-GG-GGCA-G-GATG-C-TTGA-
391 TCAACCCACAAAACGAACGTGCGGGCGCTCAACCGGCCAGAAGGGTGGCATGACAAGCCAATGAT
* * *
11674285 C-CGGGTTCCCCTCTGCATGCTGCCGATCCTACT-GCTGCAACCCTT-AGTCTGGTCTGATCTTA
456 CGCGGGTCCCCCTCTGCATGCTACCGATCCTACTATC-GCAACCCTTGA-TCTGGTCTGATCTTA
*** * * **
11674347 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCTGGCGGGTGGG
519 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCACACGGGCGGGCCGGCAGG
* * * * *
11674412 CACTACGTCGACCAGATAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
584 CACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATACGGTGGTAGGTGGGTTTAG
11674477 GCACATCTTCATATTTCTGCGTGCCAATGTGTTTTTTAGATTTTGTGACCATCTACCAATATTTC
649 GCACATCTTCATATTTCTGCGTGCCAATGTGTTTTTTAGATTTTGTGACCATCTACCAATATTTC
11674542 TGCATAAAAAAATTCAGCTAAAAACTC
714 TGCATAAAAAAATTCAGCTAAAAACTC
*
11674569 GAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGT-GTCCCCATTTTAGACACTTTAATGGCT
1 GAAGTGT--AAGATTTTGTGA-C-TTTGAAAAAAAGTGGTCACCATTTTAGACA-TTTAATGG-T
11674632 ACTGGTAGCAAACCTG-TAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT-GA
60 -CTGGTAGC-AA-CTGATAAAATCTCAAATACTCTTTAA-GGGGTGTGAGTT-TCAAGGTTTGGA
* * * *
11674695 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATTTGTGCACACC
120 TGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * *
11674760 -CCCCGGCCCCCCCGATCGTCGAAACCCCAATG-CGCCGGTCAAGTTCTCCGATGATGCTCCGAC
185 TCCCCGGCCCCCCCGATCATCGAAACCCCAATGTCGCCGATCAAGTTCTCCGACGATGCTCCGAC
* * * *
11674823 TATGGTGCCCC-GACGAAGAGAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
250 GATGGTGCCCCAG-CGAAGAAAAATGCAGCA-CAACACATGCCCAAGCCCAGCATGTGCTGCCAC
* *
11674887 AACCCTCGGTCC-G-TCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
313 AACCCTCGGACCGGTTC-GATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGCAATGAAC
* * * *
11674950 TCCGTATGCCTAAGTCAACCTATAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAAGGGTGGGAT
377 TCCGTATGCCTAAGTCAACCCACAAAACGAACGTGCGGGCGCTCAACCGGCCAGAAGGGTGGCAT
* * * *
11675015 GCACAAGCCAATGATCGGTTGGGTCCCCCTCTGCGTGCTACCGATCCTGCTATCGTAACCCTTGA
442 G-ACAAGCCAATGATC-G-CGGGTCCCCCTCTGCATGCTACCGATCCTACTATCGCAACCCTTGA
11675080 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCACAC
504 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCACAC
* *
11675145 GGGCGGGCCGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATACGGT
569 GGGCGGGCCGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATACGGT
*
11675210 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
634 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
11675254 CCATTTTTAT
Statistics
Matches: 590, Mismatches: 67, Indels: 39
0.85 0.10 0.06
Matches are distributed among these distances:
731 7 0.01
733 27 0.05
734 16 0.03
735 8 0.01
736 150 0.25
737 88 0.15
738 79 0.13
739 11 0.02
740 1 0.00
742 2 0.00
743 1 0.00
744 3 0.01
745 1 0.00
748 194 0.33
749 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.23
Consensus pattern (740 bp):
GAAGTGTAAGATTTTGTGACTTTGAAAAAAAGTGGTCACCATTTTAGACATTTAATGGTCTGGTA
GCAACTGATAAAATCTCAAATACTCTTTAAGGGGTGTGAGTTTCAAGGTTTGGATGAGGGATAGG
GGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTCCCCGGCCCC
CCCGATCATCGAAACCCCAATGTCGCCGATCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCC
AGCGAAGAAAAATGCAGCACAACACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGACCG
GTTCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAAG
TCAACCCACAAAACGAACGTGCGGGCGCTCAACCGGCCAGAAGGGTGGCATGACAAGCCAATGAT
CGCGGGTCCCCCTCTGCATGCTACCGATCCTACTATCGCAACCCTTGATCTGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCACACGGGCGGGCCGGCAGGCA
CTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATACGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCGTGCCAATGTGTTTTTTAGATTTTGTGACCATCTACCAATATTTCTG
CATAAAAAAATTCAGCTAAAAACTC
Found at i:11675838 original size:26 final size:26
Alignment explanation
Indices: 11675809--11675861 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11675799 CTGGTCCGAT
* *
11675809 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
11675835 CTTAGACTAGGAACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
11675861 C
1 C
11675862 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Done.