Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 71 of 190
Found at i:11676328 original size:904 final size:899
Alignment explanation
Indices: 11674542--11679604 Score: 6457
Period size: 904 Copynumber: 5.6 Consensus size: 899
11674532 CCAATATTTC
*
11674542 TGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
1 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
11674607 CCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATACTCTTTAAGG
66 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
11674672 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
131 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
11674737 ATCGCACATTATTTGTGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATG-CGCCGGTCA
196 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * * * *
11674801 AGTTCTCCGATGATGCTCCGACTATGGTGCCCCGACGAAGAGAAATGCAGCACCAGCACATGCCC
261 GGTTCTCCGACGATGCTCAG-CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCC
* * * *
11674866 GAGCCCAGCATGTGCTGCCACAACCCTCGGTC-CGTCTGATCTTAGACTGAGAATGAACTCCGTA
325 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
11674930 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATAAAACGAGCGTGCGGGCGCTCA
390 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCA
* * * *** * * * *
11674995 ACCGGCCAGAAGGGTGGGATGCACAAGCCAATGATCGGTTGGGTCCCCCTCTGCGTGCTACCGAT
455 ACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTTCGTG-TGCCGAT
* *
11675060 CCTGCTA-TCGTAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
519 CCTGCTACT-GCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * *
11675124 CAACCGACGAAACGAGCACACGGGCGGGCCGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCG
583 CAACCGACGAAACGA-CAGGCGGGC-GGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCG
* *
11675189 CAAGCCATGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
646 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
* *
11675254 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCATGTGAAGTTTCATGGCAA
711 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** *
11675319 GACGACTCATTTTCTATTTTTCATGATTTTCCAAACTTTTTGTGGTTTGGGATTTTTTAAAATTT
776 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTT
* *
11675384 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCA
841 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
11675443 TGCACAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
1 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
11675508 CCCCATTTTAGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAG
66 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * *
11675573 GGGTGTGAGTTCTCAAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCCAGTACTATCACCC
131 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
11675638 ATTGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCATCGGAACCCTAATGCCGCCGGTCA
196 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* *
11675702 GGTTCTCCGGCGATGCTCTAGCGATGGTGCCCCGACGAAGAAAAATGCAGCCCCAGCACATGCCC
261 GGTTCTCCGACGATGCTC-AGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCC
* * * **
11675767 TGAGCCCAGCATTTGCTGCTGCAACCTTCAATCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
325 -GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
11675832 ATGCTTAGACTAGGAACGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCGTGCGGGCGCTC
389 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTC
** * * *
11675897 AGTCGGCCAGAGGGGCAGGATGCGCAAG-CGGGGATCGACCGGGTTCCCCTCTTCGATGTGGCCG
454 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTTCG-TGT-GCCG
* * **
11675961 ATCCTGCTACTGCAACCCTCAAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGGGTGCCTAA
517 ATCCTGCTACTGCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
11676026 GCCAACCGACGAAATGAGCAGGCGGGCTGGCGGGCGGGCACTACGTCGGCTAGATAGACGGGATG
581 GCCAACCGACGAAACGA-CAGGCGGGC-GGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATG
* * ** **
11676091 TGCAAGCCGTGGATCGATAGGGTGTTAAATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
644 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAA
* ** *
11676156 TGCCATTTTAATGGCTTGTTCATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
709 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
*
11676221 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAAT
774 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAAT
* * * *
11676286 TTTTTCAGAAGGTGTATTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
839 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
11676347 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
1 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
11676412 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGG
66 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
11676477 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCCAGTACCAGCACCA
131 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
*
11676542 ATCGCACATCATGTGCGCACACCCCCTCTGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGT
196 ATCGCACATCATGTGCGCACACCCCC-C-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT
**
11676607 CAACTTCTCCGACGA---T--GC-----T---CCGAC---G----AT---------G---ATGCC
259 CAGGTTCTCCGACGATGCTCAGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCC
* * *
11676640 CGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAGTGAACTCTGT
324 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
11676705 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGTGCGGGCGCTT
389 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTC
* * * * * * * * *
11676770 AGCCGGCCAGAGGAGCGGGATGCGCGAGTCGGGGATCGATCGGGTTCCCTTATGCGTGCTGTCGA
454 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTTCGTG-TGCCGA
* * * * ***
11676835 TCATGCT-GTCGCAACCCTCGATCCGGTCCGATCTTAGACTTTCAATGAACTCCGTATGCCTAAG
518 TCCTGCTACT-GCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** *
11676899 -CAATTGACGAAA--AC-GAGC--G-GGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCG
582 CCAACCGACGAAACGACAG-GCGGGCGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCG
** * *
11676957 CAAGCCGTATATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCCTATGTGCCAAT
646 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-CTGTGTGCCAAT
* *
11677022 GCCATTTTTATGACTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAATGTTTTCATGA
710 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA-G-TTTCATGG
** *
11677086 CAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGAGATTTTTTAAAA
773 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAA
* * * *
11677151 ATTTTTCGGAAGGAGTTTTGACTCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCA
838 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * *
11677213 CGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGT
1 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
11677278 -CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGTAAG
66 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-TAAG
**
11677342 GGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGCGGCCAATAT-AGGGCCAAAGTACCAGC
130 GGGG-TGTGAGTTCTCAAGGTTTGATGAGGGATAGGG-GGCCAATATAAGGGCC-AAGTACCAGC
* * * * *
11677406 ACCCCATCACACATTCA-GTGCGCCACACCCCGCGGTCCCCCCGATCGTCGGATCCCCAAGGCCG
192 A-CCCATCGCACA-TCATGTGCG-CACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * * *
11677470 CCCGGT-AGGTCCTTCGACGATGCTCCGATGATGGTGCCCCGACGAATAAAAATGCAGCACCAGC
254 -CCGGTCAGGTTCTCCGACGATGCTCAG-CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGC
* * * *
11677534 ACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTAGTCCAATCTTAGACTGGGAATGA
317 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
* * *
11677599 ACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTATGTCAACCCATGAAATGAA-CGTGC
382 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-CAAGCGTGC
* * *
11677663 GGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTGCCCCTCTAC--
446 GGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTTCGT
* * * *
11677726 ATG-CTAT-C-G--A-T-CTA-CCTTGATCCT-GTCTGATCTTAGACTGGGAATGAACTCCGTAT
511 GTGCCGATCCTGCTACTGCAACCCTCGAT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
11677782 GCCTAAGCCAACCGACGAAACGACCGATCGGGCGAGCGAGCGGGCACTACGCCGGCCAGAGAGAC
575 GCCTAAGCCAACCGACGAAACGACAG-GCGGGCG-GCGGGCGGGCACTATGCCGGCCAGAGAGAC
* * * **
11677847 GGGATGCGTAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGAACATCTTCATATTTCTGCA
638 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTG
* *
11677912 TGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
703 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
11677977 CATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
768 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTT
* * *
11678042 TAAAATTTTTTTGGAAGGAG-TTTGGCCCTAAACTTTGGTAGACATGATCCTTGTATTTTTGTTG
833 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTG
*
11678106 ACA
897 GCA
* *
11678109 TGCTCAAAAAGAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGT
1 TGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGT
* * * * *
11678174 GTCCCCATTTCAAACACTTTAATTGCTACTCTGGCAG-AAACCTATAAAATCT-TAATGCTCTTT
64 GTCCCCATTTTAGACACTTTAATGGCTA--CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * **
11678237 AAAGGGGTGTGAGTTCAT-GAGGTTTGATGAGGGATAGGAGGAAAATATAAGGGCCAAGTACCAG
127 AAGGGGGTGTGAGTTC-TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * * *
11678301 CACCCATCGTAC-TTACGTGCACACACCCCGCC-G-CCCCCCGATCGCCAGAACCCCAATGCCGT
191 CACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
* * * *
11678363 CGATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCTCGACGAAGAGAAATGC-GACACCAGCA
255 CGGTCAGGTTCTCCGACGATGCT-CAGCGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCA
* * * *
11678427 CATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAA
318 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
** * * **
11678492 CAACGTATGCTGAGACTGGGAATGAACTCC-TATGCCTAAGTCAACCCAGGAAATGAGCGTGCGG
383 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGG
* * * *
11678556 GCGTTCAGCCGGCCAGAGGGG-GGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTGCATGC
448 GCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCT---T-C
* * *
11678620 TGTCGATCCTGCTACCGATCCTGCTGCTGCAACCCTC-AGTCTAGTTTGATCTTAGACTGGGAAT
509 -GT-G----TG---CCGATCCTGCTACTGCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAAT
* * * * * *
11678684 GAACTCCGTATGCCTAAGCCAACCGATGAAATGAACGGGCAGGCGGGTGGGCGGGCACTATGTCG
564 GAACTCCGTATGCCTAAGCCAACCGACGAAACG-ACAGGCGGGC-GGCGGGCGGGCACTATGCCG
* * *
11678749 GCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTC
627 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
11678814 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
692 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
** * *
11678879 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAAATTTTGAAACTTTTTACGGT
757 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
** * * * *
11678944 TCAGGATTTTTTAAAATTTTTTTGGAAGGCGTTTTGGCCCCAAACATGGTAGACATGATCCTTGT
822 TTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
11679009 ATTTTTTTTGGCA
887 ATTTTTGTTGGCA
* * *
11679022 TGCACAAAAACATTCAGCTAAAAAACTCGAAGTGTACATTG-TTTTCTGACCATTTGAAAAAAGT
1 TGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACA-AGATTTTGTGACCATTTGAAAAAAGT
* *
11679086 GT-CCCATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
64 GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
11679150 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
129 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
11679215 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATTGGAACCCTAATGCCGCTGG
194 CCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
** * **
11679280 TCAGGTTCT-CGGTGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGTGGGCACCAGCACAT
258 TCAGGTTCTCCGACGATGCT-CAGCGATGGTGCCCCGACGAAGAAAAATG-CAGCACCAGCACAT
* * **
11679344 GCCTGAGCCCAGGCATGTGCTGTCGCAACCCTCGGTCTGGTTAGATCTTAGACTGGGAATGAACT
321 GCCCGAGCCCA-GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
* * * *
11679409 CCATATGCTTAGATTGGGAATGAACTCCGTATGCCTTAGTCAACTCATGAAACAAGCGTGCGGGC
385 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGC
* * * * * *
11679474 CCTCAACCAGCCAGAGGGGCGGGATGCACAAGTCGAGGATCGGTCGGGTCCCCCTC-T-GTGTGC
450 GCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTTCGTGTGC
* * * *
11679537 TACTGATCTTGCTACTGCAACCCTCGGTCCGGTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
515 --C-GATCCTGCTACTGCAACCCTCGATCTGGTCTG-AT-CTTAGACTGGGAATGAACTCCGTAT
11679602 GCC
575 GCC
11679605 CATGTCAACA
Statistics
Matches: 3610, Mismatches: 419, Indels: 260
0.84 0.10 0.06
Matches are distributed among these distances:
864 98 0.03
865 97 0.03
866 193 0.05
867 36 0.01
868 59 0.02
869 21 0.01
870 11 0.00
871 11 0.00
872 36 0.01
873 163 0.05
874 30 0.01
877 1 0.00
879 1 0.00
882 5 0.00
886 2 0.00
889 2 0.00
890 76 0.02
891 64 0.02
892 154 0.04
893 21 0.01
894 9 0.00
895 19 0.01
896 137 0.04
897 123 0.03
898 120 0.03
899 31 0.01
900 36 0.01
901 450 0.12
902 52 0.01
903 131 0.04
904 539 0.15
905 27 0.01
906 7 0.00
907 71 0.02
908 1 0.00
909 8 0.00
910 17 0.00
911 102 0.03
912 34 0.01
913 395 0.11
914 70 0.02
915 72 0.02
916 46 0.01
917 32 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
GGTTCTCCGACGATGCTCAGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCG
AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAA
CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTTCGTGTGCCGATCC
TGCTACTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGACAGGCGGGCGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
Found at i:11676711 original size:26 final size:26
Alignment explanation
Indices: 11676682--11676734 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11676672 CTGGTCCGAT
* *
11676682 CTTAGACTGGGAGTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11676708 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11676734 C
1 C
11676735 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11677619 original size:26 final size:26
Alignment explanation
Indices: 11677583--11677635 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11677573 CTAGTCCAAT
11677583 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11677609 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11677635 C
1 C
11677636 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11678839 original size:913 final size:910
Alignment explanation
Indices: 11676635--11679604 Score: 3640
Period size: 913 Copynumber: 3.3 Consensus size: 910
11676625 TCCGACGATG
* *
11676635 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAGTGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* *
11676700 TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGTGCGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGG
* * * * * *
11676765 CGCTTAGCCGGCCAGAGGAGCGGGATGCGCGAGTCGGGGATCGATCGGGT-TCCCT-T--ATGC-
131 CGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCT
* * * * ***
11676825 GT-G--CTG-TCGATCATGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTTTCAATGAACT
196 ATCGATCTGCTCGATCCTGCTGT-GCAACCCTCG-TCTGGTCTGATCTTAGACTGGGAATGAACT
** * *
11676886 CCGTATGCCTAAG-CAATTGACG--A--AA-A--CGAGCGGGCGGGCGGGCACTATGCCGACCAG
259 CCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGCGGGCGGGCGGGCACTATGCCGGCCAG
** *
11676943 AGAGACGGGATGCGCAAGCCGTATATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATT
324 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
11677008 TCCTATGTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGT
389 T-CTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* **
11677072 GAATGTTTTCATGACAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTT
453 GAA-G-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTT
* * * *
11677137 GAGATTTTTTAAAAATTTTTCGGAAGGAGTTTTGACTCCAAACTTGGTAGACGA-GATCCTTGTA
516 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC-ATGATCCTTGTA
* * *
11677201 TTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTAAAAGATTTTGTGACCATT
580 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
11677266 TGAAAAAAGTGT-CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
645 TGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
**
11677330 TGCTCTTGTAAGGGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGCGGCCAATAT-AGGGC
710 TGCTCTT-TAAGGGGG-TGTGAGTTCTCAAGGTTTGATGAGGGATAGGG-GGCCAATATAAGGGC
*
11677394 CAAAGTACCAGCACCCCATCACACATTCA-GTGCGCCACACCCCG-CGGTCCCCCCGATCGTCGG
772 C-AAGTACCAGCA-CCCATCGCACA-TCATGTGCG-CACACCCCGCCGG-CCCCCCGATCGTCGG
* * * * * *
11677457 ATCCCCAAGGCCGCCCGGT-AGGTCCTTCGACGATGCTCCGATGATGGTGCCCCGACGAATAAAA
832 AACCCCAATGCCG-CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
11677521 ATGCAGCACCAGCAC
896 ATGCAGCACCAGCAC
* * * *
11677536 ATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTAGTCCAATCTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* * *
11677601 TCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTATGTCAACCCATGAAATGAA-CGTGCGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-CAAGCGTGCGG
* * *
11677665 GCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTGCCCCTCTACATGC
130 GCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGC
11677730 TATCGA--T-CT--A--C--CT-TG--A---TC--CT-GTCTGATCTTAGACTGGGAATGAACTC
195 TATCGATCTGCTCGATCCTGCTGTGCAACCCTCGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * * *
11677777 CGTATGCCTAAGCCAACCGACGAAACG-ACCGATCGGGCGAGCGAGCGGGCACTACGCCGGCCAG
260 CGTATGCCTAAGCCAACCGACGAAACGAACAG-GCGGGCGGGCGGGCGGGCACTATGCCGGCCAG
* * *
11677841 AGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGAACATCTTCATATT
324 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
** * *
11677906 TCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATG
389 TCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
11677971 AAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGG
454 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGG
* *
11678036 ATTTTTTAAAATTTTTTTGGAAGGAG-TTTGGCCCTAAACTTTGGTAGACATGATCCTTGTATTT
519 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACATGATCCTTGTATTT
* * *
11678100 TTGTTGACATGCTCAAAAAGAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
583 TTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * * *
11678165 AAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTCTGGCAG-AAACCTATAAAATCT-TA
647 -AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA--CTGGCAGCAAACCTGTAAAATCTCAA
* * * **
11678228 ATGCTCTTTAAAGGGGTGTGAGTTCAT-GAGGTTTGATGAGGGATAGGAGGAAAATATAAGGGCC
709 ATGCTCTTTAAGGGGGTGTGAGTTC-TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * * *
11678292 AAGTACCAGCACCCATCGTAC-TTACGTGCACACACCCCGCC-GCCCCCCGATCGCCAGAACCCC
773 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCGCCGGCCCCCCGATCGTCGGAACCCC
* * * * *
11678355 AATGCCGTCGATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCTCGACGAAGAGAAATGC-GA
838 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAG-
11678419 CACCAGCAC
902 CACCAGCAC
* * * *
11678428 ATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
** * * **
11678493 AACGTATGCTGAGACTGGGAATGAACTCC-TATGCCTAAGTCAACCCAGGAAATGAGCGTGCGGG
66 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGG
* * * *
11678557 CGTTCAGCCGGCCAGAGGGG-GGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTGCATGCT
131 CGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCT
* * *
11678621 GTCGATCCTGCTACCGATCCTGCTGCTGCAACCCTCAGTCTAGTTTGATCTTAGACTGGGAATGA
196 ATCGAT-CTGCT--CGATCCTGCTG-TGCAACCCTC-GTCTGGTCTGATCTTAGACTGGGAATGA
* * * * * *
11678686 ACTCCGTATGCCTAAGCCAACCGATGAAATGAACGGGCAGGCGGGTGGGCGGGCACTATGTCGGC
256 ACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGCGGGCGGGCGGGCACTATGCCGGC
* * *
11678751 CAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCAT
321 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
11678816 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
386 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
** * * *
11678881 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAAATTTTGAAACTTTTTACGGTTC
451 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTT
* * * *
11678946 AGGATTTTTTAAAATTTTTTTGGAAGGCGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTAT
516 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
* * * *
11679011 TTTTTTTGGCATGCACAAAAACATTCAGCTAAAAAACTCGAAGTGTACATTG-TTTTCTGACCAT
581 TTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACA-AGATTTTGTGACCAT
* *
11679075 TTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAA
644 TTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
11679139 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
709 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
11679204 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATTGGAACCCT
774 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCGCCGG-CCCCCCGATCGTCGGAACCCC
* ** * **
11679269 AATGCCGCTGGTCAGGTTCT-CGGTGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGTGGG
838 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-CAG
11679333 CACCAGCAC
902 CACCAGCAC
* * **
11679342 ATGCCTGAGCCCAGGCATGTGCTGTCGCAACCCTCGGTCTGGTTAGATCTTAGACTGGGAATGAA
1 ATGCCCGAGCCCA-GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
* * * *
11679407 CTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTTAGTCAACTCATGAAACAAGCGTGCGG
65 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGG
* * * * * *
11679472 GCCCTCAACCAGCCAGAGGGGCGGGATGCACAAGTCGAGGATCGGTCGGGTCCCCCTCTG--TG-
130 GCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGC
* * * * *
11679534 --T-G--CTACT-GATCTTGCTACTGCAACCCTCGGTCCGGTCCGTATGCTTAGACTGGGAATGA
195 TATCGATCTGCTCGATCCTGCT-GTGCAACCCTC-GTCTGGTCTG-AT-CTTAGACTGGGAATGA
11679593 ACTCCGTATGCC
256 ACTCCGTATGCC
11679605 CATGTCAACA
Statistics
Matches: 1784, Mismatches: 211, Indels: 142
0.83 0.10 0.07
Matches are distributed among these distances:
890 79 0.04
891 59 0.03
892 157 0.09
893 14 0.01
894 10 0.01
895 19 0.01
896 135 0.08
897 120 0.07
898 123 0.07
899 32 0.02
900 16 0.01
901 169 0.09
902 8 0.00
903 1 0.00
904 2 0.00
905 29 0.02
906 4 0.00
907 31 0.02
908 4 0.00
909 9 0.01
910 15 0.01
911 102 0.06
912 36 0.02
913 387 0.22
914 69 0.04
915 74 0.04
916 46 0.03
917 34 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (910 bp):
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGG
CGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCT
ATCGATCTGCTCGATCCTGCTGTGCAACCCTCGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAG
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGAT
TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCGCACACCCCGCCGGCCCCCCGATCGTCGGAACCCCAATGCCGC
CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCAC
Found at i:11679426 original size:26 final size:27
Alignment explanation
Indices: 11679390--11679447 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
11679380 CTGGTTAGAT
11679390 CTTAGACTGGGAATGAACTCCATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
* *
11679416 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCATATGC
11679443 CTTAG
1 CTTAG
11679448 TCAACTCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:11679686 original size:161 final size:162
Alignment explanation
Indices: 11679412--11679763 Score: 444
Period size: 161 Copynumber: 2.2 Consensus size: 162
11679402 ATGAACTCCA
* * * * *
11679412 TATGCTTAGATTGGGAATGAACTCCGTATG-CCTTAGTCAACTCATGAAACAAGCGTGCGGGCCC
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCCATAGTCAACACACGAAACAAGCGTACGGGCCC
* * * *
11679476 TCAACCAGCCAGAGGGGCGGGATGCACAAGTCGAGGATCGGTCGGGTCCCCCTCTGTGTGCTACT
66 TCAACCAGCCAGAAGGGCGGGATGCACAAGTCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACC
* *
11679541 GATCTTGCTACTGCAACCCTCGGTCCGGTCCG
131 GATCTTGCTACCGCAACCCTCAGTCCGGTCCG
* **
11679573 TATGCTTAGACTGGGAATGAACTCCGTATGCCCAT-GTCAACACACGAAACGAGCGTACGGGTGC
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCCATAGTCAACACACGAAACAAGCGTACGGGCCC
* ** ** * *
11679637 TCAGCTGGCCAGAAGGGCGGGATGTGCAAGTCGGGGATCAGAT-GGGTCCCCCTCTGCGTGCTGC
66 TCAACCAGCCAGAAGGGCGGGATGCACAAGTCGAGGATC-GATCGGGTCCCCCTCTGCGTGCTAC
* * *
11679701 CGATCTTGCTGCCGCAACCCTTAGTCTGGTCCG
130 CGATCTTGCTACCGCAACCCTCAGTCCGGTCCG
11679734 -AT-CTTAGACTGGGAATGAACTCCGTATGCC
1 TATGCTTAGACTGGGAATGAACTCCGTATGCC
11679764 TAAGCCAACC
Statistics
Matches: 165, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
159 28 0.17
160 2 0.01
161 130 0.79
162 5 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (162 bp):
TATGCTTAGACTGGGAATGAACTCCGTATGCCCATAGTCAACACACGAAACAAGCGTACGGGCCC
TCAACCAGCCAGAAGGGCGGGATGCACAAGTCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACC
GATCTTGCTACCGCAACCCTCAGTCCGGTCCG
Found at i:11682071 original size:32 final size:33
Alignment explanation
Indices: 11682022--11682083 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
11682012 CAACCCTCGG
11682022 TCCGTCTGATCTGTAGGACTGGAGAATGAAAAC
1 TCCGTCTGATCTGTAGGACTGGAGAATGAAAAC
*
11682055 TCCGT-TGATGCT-TAGGACTGGGGAATGAA
1 TCCGTCTGAT-CTGTAGGACTGGAGAATGAA
11682084 CTCCGGTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 20 0.74
33 7 0.26
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (33 bp):
TCCGTCTGATCTGTAGGACTGGAGAATGAAAAC
Found at i:11683861 original size:26 final size:26
Alignment explanation
Indices: 11683832--11683884 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11683822 CTGGTCCGAT
* *
11683832 CTTAGACTGGGAGTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11683858 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11683884 C
1 C
11683885 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11684763 original size:26 final size:26
Alignment explanation
Indices: 11684727--11684779 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11684717 CTAGTCCAAT
11684727 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
11684753 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
11684779 C
1 C
11684780 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:11686102 original size:911 final size:902
Alignment explanation
Indices: 11683785--11686671 Score: 3799
Period size: 892 Copynumber: 3.2 Consensus size: 902
11683775 TCCGACGATG
** * *
11683785 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAGTGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* *
11683850 TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGT-CGGG
66 AC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGG
* * * * *
11683914 CGCTTAGCCGGCCAGAGGGGCGGGATGCGCGAGTCGGGGATCGATCGGGT-TCCCT-T--ATGC-
130 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCT
* ** * ***
11683974 GT-G-CTG-TCGATCATGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTTTCAATGAACTC
195 GTCGACTGCTCGATCCTGCTAT-GCAACCCTC-AGGCTGTCTGATCTTAGACTGGGAATGAACTC
** *
11684036 CGTATGCCTAAGCCAATTGACGAAACGAA---GC--G-GGCGGGCGGGCACTATGCCGACCAGAG
258 CGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGCGGGCGGGCACTATGCCGGCCAGAG
** *
11684095 AGACGGGATGCGCAAGCCGTATATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTC
323 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
11684160 TATGTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
388 TGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * *
11684225 GTTTCATGACAAGACGACTCGTTTTCTATTTTTCATG-ATTTTCAAAACTTTTTACGGTTCGAGA
453 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-GAATTTT-GAAACTTTTTGCGGTTCGGGA
* * *
11684289 TTTTTTAAAAATTTTTCGGAAGGAGTTTTGACTCCAAACTTGGTAGACGTGATCCTTGTATTTTT
516 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * *
11684354 GTTGGCACGCACAAAACAATTCAGCTAAAAAGTCGAAGTGTAAAAGATTTTGTGACCATTTGAAA
581 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
11684419 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
646 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
11684484 TTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
711 TTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
11684549 AGCACCCATCACACATCATGTGCGCACACCCCCACGGCCCCCCGATTGTCGGATCCCCAAGGCCG
776 AGCACCCATCGCACATCATGTGCGCACACCCCC-C-GCCCCCCGATCGTCGGAACCCCAATGCCG
* * * * *
11684614 CCGGTTAGGTTCTTCGACGATGCTCCGATGATGGTGCCCCGACGAATAAAAATGCAGCACCAGAA
839 -CGGTCAGGTTC-TCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCA
11684679 C
902 C
* * * *
11684680 ATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTTGGTCTAGTCCAATCTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* * * *
11684745 TCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTATGTCAACCCATGAAATGAA-CGTGCGG
66 AC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-CAAGCGTGCGG
* *
11684809 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTGCCCCTCTACATGC
129 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGC
*
11684874 TATCGA-T-CT--A--C--CT-TG--A---TC---CTGTCTGATCTTAGACTGGGAATGAACTCC
194 TGTCGACTGCTCGATCCTGCTATGCAACCCTCAGGCTGTCTGATCTTAGACTGGGAATGAACTCC
* ** * **
11684922 GTATGCCTAAGCCAACCGACGAAACGACCGATCGGGCGGGCGAGCGGGCACTACACCGGCCAGAG
259 GTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGC-GGCGGGCGGGCACTATGCCGGCCAGAG
* * *
11684987 AGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGAACATCTTCATATTTC
323 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
** *
11685052 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAA
388 TGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *
11685117 GTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAT
453 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-GAATTTTGAAACTTTTTGCGGTTCGGGAT
* * * *
11685182 TTTTTAAAATTTTTTTGGAAGGAGTTTTGTCCCTAAACTTGGTAGACATGATCCTTGTATTTTTG
517 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
11685247 TTGACATGCTCAAAAGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
582 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * *
11685312 AAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTTAAATGCTCT
647 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* **
11685377 TTAAAGGGGTGTGAGTTCAT-GAGGTTTGATGAGGGATAGGAGGAAAATATAAGGGCCAAGTACC
712 TTAAAGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
11685441 AGCACCCATCGTACAT-ATGTGCACACACCCCGCCGCCCCCCGATCGCCAGAACCCCAATGCCGT
776 AGCACCCATCGCACATCATGTGCGCACACCCC-CCGCCCCCCGATCGTCGGAACCCCAATGCCG-
* * * *
11685505 CGATCAGGTTCTCCGATGATGCTCC-AGCGATGGTGCCTCGACGAAGAGAAATG-TGACACCAGC
839 CGGTCAGGTTCT-CGATGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGC
11685568 AC
901 AC
* * *
11685570 ATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* * *
11685635 AACGTATGCTGAGACTGGGAATGAACTCC-TATGCCTAAGTCAACCCAGGAAACGAGCGTGCGGG
66 -ACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGG
* * * *
11685699 CGTTCAGCAGGCCAGAGGGG-GGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCATGCT
130 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCT
*
11685763 GTCGATCCTGCTACGGATCCTGCTGCTGCAACCCTCAGGCTAGTCTGATCTTAGACTGGGAATGA
195 GTCGA--CTGCT-C-GATCCTGCT-ATGCAACCCTCAGGCT-GTCTGATCTTAGACTGGGAATGA
* * * * *
11685828 ACTCCGTATGCCTAAGCCAACCGATGAAATGAACGGGCAGGCTGGTGGGCGGGCACTATGTCGGC
254 ACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGC-GGCGGGCGGGCACTATGCCGGC
* *
11685893 CAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCAT
318 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
11685958 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
383 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
11686023 GTGAAGTTTCATGGCAAAGACGACTCGTTTTCTA-TTTTCAAAATTTTGAAACTTTTTTACGGTT
448 GTGAAGTTTCATGGC-AAGACGACTCGTTTTCTATTTTTCAGAATTTTGAAAC-TTTTTGCGGTT
* * * * *
11686087 CAGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTA
511 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * *
11686152 TTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACATGATTTTCTGACCATT
576 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
11686217 TGAAAAAAGTGT-CCCATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAA
641 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
11686281 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
706 TGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
11686346 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCATTGGAACCCT
771 GTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCC-G-CCCCCCGATCGTCGGAACCCC
* * **
11686411 AATGCCGCTGGTCAGGTTCTCGGTGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGTGGCA
832 AATGCCGC-GGTCAGGTTCTCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCA
11686476 CCAGCAC
896 CCAGCAC
* **
11686483 ATGCCTGAGCCCAGCATGTGCTG-TCGCAACCCTCGGTCTGGTTAGATCTTAGACTGGGAATGAA
1 ATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
* * *
11686547 CTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCATGAAACAAGCGTGCGG
65 C-ACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGG
* * ** * * * ***
11686612 GCCCTCAACTAGCCAGAGGGGCGGGATGCACAAGTCGAGGATCGGTTGGGTCCCCCTCTG
129 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTG
11686672 TGTGCTACTG
Statistics
Matches: 1740, Mismatches: 190, Indels: 104
0.86 0.09 0.05
Matches are distributed among these distances:
885 51 0.03
888 46 0.03
889 52 0.03
890 157 0.09
891 17 0.01
892 450 0.26
893 5 0.00
894 1 0.00
895 111 0.06
896 55 0.03
897 4 0.00
898 2 0.00
900 7 0.00
901 1 0.00
902 5 0.00
904 1 0.00
907 2 0.00
909 1 0.00
910 138 0.08
911 369 0.21
912 19 0.01
913 132 0.08
914 82 0.05
915 32 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
ATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
ACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGC
GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTG
TCGACTGCTCGATCCTGCTATGCAACCCTCAGGCTGTCTGATCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGCGGGCGGGCACTATGCCGGCCAGAGAGA
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGT
GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCAGAATTTTGAAACTTTTTGCGGTTCGGGATTTTT
TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGGAACCCCAATGCCGCGGTCAG
GTTCTCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCAC
Found at i:11686566 original size:26 final size:27
Alignment explanation
Indices: 11686530--11686587 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
11686520 CTGGTTAGAT
11686530 CTTAGACTGGGAATGAACTCCATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
*
11686556 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCATATGC
11686583 CTTAG
1 CTTAG
11686588 TCAACCCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:11686831 original size:162 final size:161
Alignment explanation
Indices: 11686552--11686904 Score: 451
Period size: 162 Copynumber: 2.2 Consensus size: 161
11686542 ATGAACTCCA
** * *
11686552 TATGCTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCATGAAACAAGCGTGCGGGCCCT
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCCCAGTCAACACACGAAACAAGCGTGCGGGCCCT
* * * * **
11686617 CAACTAGCCAGAGGGGCGGGATGCACAAGTCGAGGATCGGTTGGGTCCCCCTCTGTGTGCTACT-
66 CAACTAGCCAGAAGGGCGGGATGCACAAGCCGAGGATCAGATGGGTCCCCCTCTACGTGCT-CTC
* * *
11686681 GATCTTGCTACTGTAACCCTCGGTCCGGTCCG
130 GATCCTGCTACCGCAACCCTCGGTCCGGTCCG
* **
11686713 TATGCTTAGACTGGGAATGAACTCCGTATGCCCCATGTCAACACACGAAACGAGCGTGCGGGTGC
1 TATGCTTAGACTGGGAATGAACTCCGTATGCCCCA-GTCAACACACGAAACAAGCGTGCGGGCCC
* * ** * *
11686778 TCAGCTGGCCAGAAGGGCGGGATGTGCAAGCCGGGGATCAGATGGGTCCCCCTCTACGTGCTGTC
65 TCAACTAGCCAGAAGGGCGGGATGCACAAGCCGAGGATCAGATGGGTCCCCCTCTACGTGCTCTC
* *
11686843 GATCCTGCTACCGCAACCCTTGGTCTGGTCCG
130 GATCCTGCTACCGCAACCCTCGGTCCGGTCCG
11686875 -AT-CTTAGACTGGGAATGAACTCCGTATGCC
1 TATGCTTAGACTGGGAATGAACTCCGTATGCC
11686905 TAAGCCAACC
Statistics
Matches: 166, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
160 28 0.17
161 36 0.22
162 102 0.61
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (161 bp):
TATGCTTAGACTGGGAATGAACTCCGTATGCCCCAGTCAACACACGAAACAAGCGTGCGGGCCCT
CAACTAGCCAGAAGGGCGGGATGCACAAGCCGAGGATCAGATGGGTCCCCCTCTACGTGCTCTCG
ATCCTGCTACCGCAACCCTCGGTCCGGTCCG
Found at i:11690017 original size:888 final size:871
Alignment explanation
Indices: 11686695--11691628 Score: 5324
Period size: 911 Copynumber: 5.5 Consensus size: 871
11686685 TTGCTACTGT
* * * *
11686695 AACCCTCGGTCCGGTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCCCATGTCAACACACG
1 AACCCTCGATCCGGTCCG-AT-CTTAGACTGGGAATGAACTCCGTATG-CCTAAGTCAACCCACG
* * * * *
11686760 AAACGAGCGTGCGGGTGCTCAGCTGGCCAGAAGGGCGGGATGTGCAAGCCGGGGATCAGAT-GGG
63 AAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GATCGGG
* * * * *
11686824 TCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGA
127 TCCCCCTCTTCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
* * **
11686889 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGACCGATCGGGCGGGCGAGCGGGCACTACAC
192 ATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA-CGAGCGGGC-GG-G-GCGGGCACTACGT
* * *
11686954 CGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGAACATCT
253 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
11687019 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
318 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * **
11687084 TCACATGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
383 TCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
* * *
11687149 GTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT-GTCCCTAAACTTGGTAGACATGATCCT
448 GTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGTCCC-AAACTTGGTAGACGTGATCCT
* * *
11687213 TGTATTTTTGTTGACATGCTCAAAAGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
512 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
11687278 CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCT
577 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * **
11687343 TAAATGCTCTTTAAAGGGGTGTGAGTTCAT-GAGGTTTGATGAGGGATAGGAGGAAAATATAAGG
642 CAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * *
11687407 GCCAAGTACCAGCACCCATCGTACAT-ATGTGCACACACCCCGCC-G-CCCCCCGATCGCCAGAA
706 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAA
* * * * *
11687469 CCCCAATGCCGTCGATCAGGTTCTCCGATGATGCTCCAGCGATGGTGCCTCGACGAAGAGAAATG
771 CCCCAATGCCGTCGGTCAGGTTCTCC--CGATGCTCC-GCGATGGTGCCCCGGCGAAGAAAAATG
* * * *
11687534 TGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGC
833 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* *
11687573 AACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACAACGTATGCTGAGACTGGGAATGAACT
1 AACCCTCGATCCGGTCCGATCTTAGACTGGGAATG---AAC---T-C-----C-------G----
* * * *
11687638 CCTATGCCTAAGTCAACCCAGGAAACGAGCGTGCGGGCGTTCAGCAGGCCAGAGGGG-GGGATGC
43 --TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGC
** * **
11687702 GCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCATGCTGTCGATCCTGCTACGGATCCTGCTGCTG
106 GCAAGCCGGGGATCGATCGGGTCCCCCTCT---T-C-GT-G---CTG-T-C-GATCCTGCTGCCA
* *
11687767 CAACCCTCAGG-CTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
159 CAACCCTC-GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
11687831 AATGAACGGGCAGGCTGGTGGGCGGGCACTATGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGG
223 AATG-ACGAGCGGGC--G-GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
11687896 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
284 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
*
11687961 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCAT
349 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* * *
11688026 TTTTTATTTTCCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAAG
414 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAG
* *
11688091 AGTTTTGGCCCCAAACTTTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTC
479 AGTTTTGGTCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
11688156 AGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
543 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * *
11688221 TTTGATGGCTACTGGCAGCAAACCTATAAAATCTAAAATGCTCTTCAAGGGGGTGTGAGTTCTGG
608 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * **
11688286 ATGTTTTATGAGGGATAGGGGGCCAATACCAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
673 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
11688351 CGCACACCCCACCGGCCCCCCCGATCGTCGGAATCCCAATACCGCCAGTCAGGTTCT-CCGA---
738 CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCCGATGC
* * *
11688412 ----CGATGGTGCCCCAGCGAAGAAAAATGCAGCACCAGCACATGCCCGATCCCAGCATGTGCTG
803 TCCGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
11688473 CCGC
868 CCGC
*
11688477 AACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
11688542 CGAGCGTGCGGGCGCTCAGCC-AGCCAGAGGGGCGGGATGCGCAAGTCGGGGTTCGACCGGGTTC
66 CGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
* * * * * ** *
11688606 CTCTCTGCGTGCTGTCAATCCTGCTACCACAACACTCAATCCT-ATCTGATCTTAGACTGGGAAT
130 CCCTCTTCGTGCTGTCGATCCTGCTGCCACAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAAT
* ** * *
11688670 GAACTCCATATGCCTAAGCCAACTAACG-AA--ACGAGCGGG-TGGGTGGGCACTACG-CAGGCC
194 GAACTCCGTATGCCTAAGCCAACCGACGAAATGACGAGCGGGCGGGGCGGGCACTACGTC-GGCC
* * * * *
11688730 AGAGAGACGGGACGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTTATA
258 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * *
11688795 TTTTTGCATGCCAATACCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACG
323 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
*
11688860 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCG
388 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCG
* * *
11688925 AGATGTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATT
453 GGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * *
11688990 TTTATTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACCATTTG
518 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
11689055 AAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACG
583 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
11689120 CTATTTAAGGGGGTGTGAGTTCTCGATGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGT
648 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
11689184 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCTTCCCTCGATCG-CTGGAACCCCA
713 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCCGATCGTC-GGAACCCCA
* * * *
11689248 ATACCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGGGCCTCGGCAAAGAAAAATGCGGCA
776 ATGCCGTCGGTCAGGTTCTCC--CGATGCTCC-GCGATGGTGCCCCGGCGAAGAAAAATGCGGCA
** *
11689313 CCAATACATGCTCGAGCCCAGCATGTGCTGCCGC
838 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
11689347 AACCCTTGATCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
1 AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * *
11689412 TGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGAGCAAGCCGGGGATCGATCGGGTCCC
66 CGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
* * **
11689477 CCTCTGTC-TGCTATCGATCCTGCTGCCACAACCCTCGGTCTTGTCCAATCTTAGACTGGGAATG
131 CCTCT-TCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
11689541 AACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCAGACGGGCGGCCTGGCTGGCAG
195 AACTCCGTATGCCTAAGCCAACCGACGAAATGA-----C--G-AG-CGGGCGG---GGC-GG--G
* * * * *
11689606 CACTATGTCTGCCAGAGAGACGGGATGCGCAAGCTGTGAATCGATAGGGTGGTAGATGGGTTTAG
245 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
11689671 GCACATTTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
310 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * * *
11689736 TTAAGCCATCACGTG-ATTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAAG
375 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAA-
* *
11689799 CTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGTCCCAAACTTGGTAGAC
439 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGTCCCAAACTTGGTAGAC
*
11689864 GTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
504 GTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
11689928 TTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTATTGGCAGCAAAGCT
568 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
11689993 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCGA
633 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
11690058 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCTCGGCCCCCCCAAT
698 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
* * *
11690122 CGTCGGAACCCTAGTGCCGTCGGTCAAG---T-----T-CT-C-CGA-----------CGAAGAA
763 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCCGATGCTCCGCGATGGTGCCCCGGCGAAGAA
* * *
11690165 AAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGC
828 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * *
11690209 AACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACT
1 AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC-----CTA--AGTCAAC-
* * * * * *
11690274 CCGTATGCTTAGACTAG-GAATGAACTCTGTATGC-CTAAGTCAACGCACGAAACAAGCGTGCGG
58 CC--A--C-GAAACGAGCG--TG----C-G--GGCGC----TC-A-GC-CG--AC---C-AGAGG
* * * * * *
11690337 GCGTTTAACCGGCTAGAGGGGCGGCATGCATAAGTCGGGGATCGA-CTGGGTCTCCCTATACATG
96 G-G------CGG---GA-----TGC--GC--AAGCCGGGGATCGATC-GGGTCCCCCTCTTCGTG
* * * * * * *
11690401 CTGCCGATCTTGCTGCCGCAACCCCCGGTCTGGTTTGATCTAAGACTGGGAATGAACTCTGTATG
141 CTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
11690466 CCTATGCCAACTGAGGAAATGAACGGACGGGCGGGCGAGCAGGCAGGCACTACGTCGGCTAGAGA
206 CCTAAGCCAACCGACGAAATG-AC-GA---GCGGGCG-G--GGCGGGCACTACGTCGGCCAGAGA
* *
11690531 GACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCT
263 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* ** *
11690596 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCATTTAAGCCTTCATGTGAAG
328 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * *
11690661 TTTCATGACAAGACGACTCATTTTCGATTTTTCATG------G-------TT----TTCGAGATT
393 TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
* *
11690709 TTTTAAAGTTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
458 TTTTAAAATTTTTTCGGAAA-GAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
11690773 TTGGCATGCACAAAAAAATTCAGCTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
522 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
*
11690838 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCT
587 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
11690903 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
652 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
11690968 GCACCCATCGCACATCATGTGCGCACACTCCCCCCGG-CCCCCTGATCGTCAGAACCCCAATGCA
717 GCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * * **
11691032 GCCGATCAGGTTCTCCAGCGACGCTCCGGCGATGGTGCCCCGACGAAGAAAAATAAGGCACCAGC
781 GTCGGTCAGGTTCTCC--CGATGCTCC-GCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
* * *
11691097 ACATGCCCGAGCCTAGCATGTACTGCCAC
843 ACATGCCCGAGCCCAGCATGTGCTGCCGC
*
11691126 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACTGGGAATGAATT
1 AA-CC-C--T-CG-----ATC-----C-------G--GTCCG-AT-CTTAGACTGGGAATGAACT
* * * *
11691191 CCGTATACCTAAGTTAACCCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGAT
40 CCGTATGCCTAAGTCAA-CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGAT
* * * * * *
11691256 GCGTAAGCCGGGGATTGGTTGGGTCCCCCTCTTCGTGCTGCCGATCCTGCTTCCACAACCCTCGG
104 GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTTCGTGCTGTCGATCCTGCTGCCACAACCCTCGG
* * * * * ** *
11691321 TCCGGTCTAATCTTAGATTGAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAACGGGC
169 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-TGACGAGC
* * ** * *
11691386 GGG-TGGGCAGGCACTACACCGGCCAGAGAGACAGGATGCACAAGCCGTGGATCGATAGGGTGGT
233 GGGCGGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
11691450 AGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA-TTTTATGGCTTGTAAATTCA
298 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
11691514 CACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCATTTTCTATTTTTCAT
363 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAT
* * *
11691579 GATTTTCGAAACTTTTTGCGGTTCAGGATTTTTTAAATTTTTTTC-GAAAG
428 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAG
11691629 GACCATTCGG
Statistics
Matches: 3433, Mismatches: 391, Indels: 443
0.80 0.09 0.10
Matches are distributed among these distances:
858 61 0.02
859 215 0.06
860 235 0.07
862 94 0.03
864 7 0.00
867 5 0.00
868 60 0.02
869 10 0.00
870 248 0.07
871 7 0.00
872 1 0.00
873 4 0.00
874 3 0.00
875 7 0.00
876 19 0.01
877 3 0.00
878 19 0.01
879 53 0.02
880 33 0.01
881 3 0.00
882 6 0.00
883 82 0.02
884 95 0.03
885 1 0.00
886 5 0.00
887 49 0.01
888 273 0.08
889 182 0.05
890 5 0.00
891 269 0.08
892 136 0.04
893 7 0.00
894 2 0.00
895 8 0.00
896 5 0.00
897 1 0.00
898 2 0.00
899 32 0.01
900 68 0.02
901 9 0.00
902 3 0.00
903 3 0.00
904 93 0.03
905 3 0.00
906 3 0.00
907 133 0.04
908 36 0.01
909 4 0.00
910 14 0.00
911 314 0.09
912 230 0.07
913 19 0.01
914 99 0.03
915 36 0.01
917 49 0.01
918 4 0.00
919 2 0.00
920 2 0.00
921 1 0.00
922 2 0.00
923 2 0.00
925 1 0.00
926 1 0.00
927 2 0.00
930 2 0.00
931 5 0.00
932 3 0.00
934 1 0.00
936 6 0.00
937 1 0.00
938 3 0.00
939 1 0.00
941 5 0.00
942 2 0.00
943 24 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (871 bp):
AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
CCTCTTCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAATGACGAGCGGGCGGGGCGGGCACTACGTCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGA
TTTTTTAAAATTTTTTCGGAAAGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
GTCGGTCAGGTTCTCCCGATGCTCCGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
TGCCCGAGCCCAGCATGTGCTGCCGC
Found at i:11690258 original size:26 final size:26
Alignment explanation
Indices: 11690229--11690307 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
11690219 CCGGTCCGAT
* *
11690229 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11690255 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
11690281 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11690307 C
1 C
11690308 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11690845 original size:891 final size:895
Alignment explanation
Indices: 11689367--11691587 Score: 2671
Period size: 891 Copynumber: 2.5 Consensus size: 895
11689357 CCGGTCCGAT
* * * * *
11689367 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACT-GGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * **
11689432 CGACCAGAGGGGCGGGATG-AGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTCTGCTATCGATC
64 CGGCCAGAGGGGCGGGATGCA-TAAGCCGGGGATCGAT-GGGTCCCCCTCT-TCTGCTGCCGATC
* *
11689496 CTGCTGCCACAACCCTCGGTCTTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
126 CTGCTGCCACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
11689561 ACCGACGAAATGAGCGGGCGGGCAGACGGGCGGCCTGGCTGGCAGCACTATGTCTGCCAGAGAGA
191 ACCGACGAAATGAACGGAC-GG--G-CGGGCGG-C-GGC-AG--GCACTACGTCGGCCAGAGAGA
* * *
11689626 CGGGATGCGCAAGCTGTGAATCGATAGGGTGGT-AGATGGGTTTAGGCACATTTTCATATTTCTA
247 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAG-TGGGTTTAGGCACATCTTCATATTTCTA
* *
11689690 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTG-ATT
311 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * *
11689754 TTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAGCTTTTTGCGGTTTGGGATTT
376 TTCATGGCAAGACGACTCATTTTCTATTTTT--C-A---T----G-ATTTT-C-----GAGATTT
*
11689819 TTTAAAATTTTTTCAGAAAGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTG
424 TTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTG
*
11689884 GCATGCACAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
489 GCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
11689949 GTGTCCCCACTTCAGACACTTTAATGGCTATTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTT
554 GTGTCCCCACTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
11690014 AAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGC
619 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
11690079 ACCCATCGCACATCATGTGCGCACA-CCCCTCGGCCCCCCCAATCGTCGGAA-CCCTA-G-TGCC
684 ACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCAATCGTCAGAACCCCAATGCAGCC
* * *
11690140 G-TC-GG-T-CA-A-G-T-T-CTCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAG
748 GATCAGGTTCCAGACGATGTGCCCCGACGAAGAAAAATAAGGCACCAGCACATGCCCGAGCCCAG
* * * * * *
11690196 CATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGA
813 CATGTACTGCCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
11690261 CTAGGAATGAACTCCGTA
878 CTAGGAATGAACTCCGTA
* * *
11690279 TGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACGCACGAAACAAGCGTGCGGGCGTTTA
1 --CTTAGACT-GGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCA
* * * * * * *
11690344 ACCGGCTAGAGGGGCGGCATGCATAAGTCGGGGATCGACTGGGTCTCCCTATACATGCTGCCGAT
62 GCCGGCCAGAGGGGCGGGATGCATAAGCCGGGGATCGA-TGGGTCCCCCTCTTC-TGCTGCCGAT
* * * * * * * *
11690409 CTTGCTGCCGCAACCCCCGGTCTGGTTTGATCTAAGACTGGGAATGAACTCTGTATGCCTATGCC
125 CCTGCTGCCACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
11690474 AACTGAGGAAATGAACGGACGGGCGGGCGAGCAGGCAGGCACTACGTCGGCTAGAGAGACGGGAT
190 AACCGACGAAATGAACGGACGGGCGGGCG-GC-GGCAGGCACTACGTCGGCCAGAGAGACGGGAT
*
11690539 GCGCAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
253 GCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
** * *
11690604 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCATTTAAGCCTTCATGTGAAGTTTCATGA
318 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
11690669 CAAGACGACTCATTTTCGATTTTTCATGGTTTTCGAGATTTTTTAAAGTTTTTTC-GAAAGGAGT
383 CAAGACGACTCATTTTCTATTTTTCATGATTTTCGAGATTTTTTAAAATTTTTTCAGAAA-GAGT
11690733 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGC
447 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAAATTCAGC
* *
11690797 TTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
511 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTT
*
11690862 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGG
576 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
11690927 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
641 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
**
11690992 ACACTCCCCCCGGCCCCCTGATCGTCAGAACCCCAATGCAGCCGATCAGGTTCTCCAGCGACGCT
706 ACAC-CCCCCCGGCCCCCCAATCGTCAGAACCCCAATGCAGCCGATCAGG-T-TCCA--GA----
*
11691057 CCGGCGATGGTGCCCCGACGAAGAAAAATAAGGCACCAGCACATGCCCGAGCCTAGCATGTACTG
762 ----CGAT-GTGCCCCGACGAAGAAAAATAAGGCACCAGCACATGCCCGAGCCCAGCATGTACTG
* *
11691122 CCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACTGGGAATG
822 CCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATG
*
11691187 AATTCCGTA
887 AACTCCGTA
*
11691196 --T--AC----CT-AA---G--T---TAA--C--CCCACGAAACGAGCGTGCGGGCGTTCAGCCG
1 CTTAGACTGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCG
* * *
11691240 GCCAGAGGGGCGGGATGCGTAAGCCGGGGATTGGTTGGGTCCCCCTCTTCGTGCTGCCGATCCTG
66 GCCAGAGGGGCGGGATGCATAAGCCGGGGA-TCGATGGGTCCCCCTCTTC-TGCTGCCGATCCTG
* * * *
11691305 CTTCCACAACCCTCGGTCCGGTCTAATCTTAGATTGAGAATGAACTCCGTATGCCTAAGCCAACC
129 CTGCCACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * ** * *
11691370 GATGAAA-CAA---ACGGGCGGG-TG-GGCAGGCACTACACCGGCCAGAGAGACAGGATGCACAA
194 GACGAAATGAACGGACGGGCGGGCGGCGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* **
11691429 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* *
11691494 -TTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
11691558 GACTCATTTTCTATTTTTCATGATTTTCGA
389 GACTCATTTTCTATTTTTCATGATTTTCGA
11691588 AACTTTTTGC
Statistics
Matches: 1139, Mismatches: 131, Indels: 105
0.83 0.10 0.08
Matches are distributed among these distances:
883 86 0.08
884 94 0.08
886 1 0.00
888 9 0.01
890 4 0.00
891 266 0.23
892 162 0.14
893 13 0.01
894 2 0.00
895 4 0.00
896 6 0.01
897 6 0.01
898 1 0.00
899 1 0.00
900 1 0.00
901 3 0.00
902 1 0.00
904 1 0.00
905 3 0.00
906 2 0.00
907 132 0.12
908 31 0.03
909 1 0.00
910 10 0.01
911 4 0.00
913 6 0.01
914 172 0.15
915 2 0.00
916 1 0.00
917 114 0.10
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (895 bp):
CTTAGACTGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCG
GCCAGAGGGGCGGGATGCATAAGCCGGGGATCGATGGGTCCCCCTCTTCTGCTGCCGATCCTGCT
GCCACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAATGAACGGACGGGCGGGCGGCGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCATTTTCTATTTTTCATGATTTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCC
AAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
GGCCCCCCAATCGTCAGAACCCCAATGCAGCCGATCAGGTTCCAGACGATGTGCCCCGACGAAGA
AAAATAAGGCACCAGCACATGCCCGAGCCCAGCATGTACTGCCACAACCCTCGGTCCGATCCAAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTA
Found at i:11691176 original size:26 final size:26
Alignment explanation
Indices: 11691146--11691196 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11691136 CCGATCCAAT
11691146 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAAGTCCGTATG
*
11691172 CTTAGACTGGGAATGAATTCCGTAT
1 CTTAGACTGGGAATGAAGTCCGTAT
11691197 ACCTAAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAGTCCGTATG
Found at i:11692970 original size:509 final size:509
Alignment explanation
Indices: 11692029--11693034 Score: 1676
Period size: 509 Copynumber: 2.0 Consensus size: 509
11692019 ACTATGCCGA
* *
11692029 CCAGAGAGACGGGATGCACAGGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGACACATCTTCA
1 CCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGATGGTAGATGGGTTTAGACACATCTTCA
*
11692094 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 TATTTCTGCATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
11692159 CCTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTATTCACGATTTTCAAAATTTTTATGGTTC
131 CCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTATTCACGATTTTCAAAATTTTTATGGTTC
* *
11692224 GGGATTTTTTAAACTTTTTTCGGAAAGATTTTTGCCCACAAACTTGGTAGAAGTGATCCTTGTAT
196 GGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGCCCACAAACTTGGGAGAAGTGATCCTTGTAT
*
11692289 TTTTTTTGGCATACACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAACATTTTGTGACCATTT
261 TTTTGTTGGCATACACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAACATTTTGTGACCATTT
*
11692354 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAAT
326 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * **
11692419 GCTGTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTTGCCAATATAAGGGCCAAG
391 GCTCTTTAAAGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
11692484 TACCAGCACCCATCGCACATCATGTGCGCACA-ACCCCCCGGGCACTACGTCTG
456 TACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGGGCACTACGTCTG
* * *
11692537 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGATGGTAGATGGGTTTAGACACATCTTCA
11692602 TATTTCTGCATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 TATTTCTGCATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * *
11692667 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTT
131 CCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTATTCACGA-TTTTCAAAATTTTTATGGTT
* * *
11692732 TGGGATTTTTTAAAATTTTTTC-GAAAGGATTTTTGGGCC-CAAACTTGGGAGACGTGATCCTTG
195 CGGGATTTTTTAAAATTTTTTCGGAAA-GATTTTT-GCCCACAAACTTGGGAGAAGTGATCCTTG
* * * *
11692795 TATTTTTGTTGGCATGCACAAAAAAATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
258 TATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAACATTTTGTGACCA
*
11692860 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTGAAATCTCA
323 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
11692925 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATTTAAGGGCC
388 AATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
11692990 AAGTACCAGCACCCATTGGACATCATGTGCGCACACACCCCCCGG
453 AAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGG
11693035 CCCCCTGATC
Statistics
Matches: 462, Mismatches: 32, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
508 169 0.37
509 281 0.61
510 12 0.03
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (509 bp):
CCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGATGGTAGATGGGTTTAGACACATCTTCA
TATTTCTGCATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTATTCACGATTTTCAAAATTTTTATGGTTC
GGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGCCCACAAACTTGGGAGAAGTGATCCTTGTAT
TTTTGTTGGCATACACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAACATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAAGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGGGCACTACGTCTG
Found at i:11693206 original size:25 final size:26
Alignment explanation
Indices: 11693165--11693214 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
11693155 CTGGTCTGTC
11693165 TTAGACTGCGAATAACTC-GTATGCG
1 TTAGACTGCGAATAACTCTGTATGCG
*
11693190 TTAGACTG-GGATGAACTCTGTATGC
1 TTAGACTGCGAAT-AACTCTGTATGC
11693215 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 13 0.59
26 6 0.27
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACTGCGAATAACTCTGTATGCG
Found at i:11694095 original size:26 final size:26
Alignment explanation
Indices: 11694043--11694095 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11694033 CTGGTCTGAT
* * *
11694043 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
11694069 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
11694095 C
1 C
11694096 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:11695856 original size:26 final size:26
Alignment explanation
Indices: 11695820--11695872 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11695810 CTGGTCTGAT
*
11695820 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11695846 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11695872 C
1 C
11695873 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11698531 original size:26 final size:26
Alignment explanation
Indices: 11698493--11698545 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11698483 CTGATCTGAT
11698493 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
11698519 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11698545 C
1 C
11698546 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11700146 original size:902 final size:900
Alignment explanation
Indices: 11692522--11718058 Score: 29728
Period size: 902 Copynumber: 28.8 Consensus size: 900
11692512 CACAACCCCC
* *
11692522 CGGGCACTACGTCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
11692587 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
11692652 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
** * * * * * *
11692717 AAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGGCCCAAACTTGGGA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
11692782 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCGGCTAAAAACTCGAAGTGTACAA
261 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
11692847 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
326 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
11692912 CTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGC
391 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
11692977 CAATTTAAGGGCCAAGTACCAGCACCCATTGGACATCATGTGCGCACACACCCCCCGGCCCCCTG
456 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCGGCCCCCCG
* * * * *
11693042 ATCATCGGAACCGCAATGCCGTCC-GTCAGGTTCTCCGGCGATGGT--GCCACGGT-----GA-G
519 ATCGTCGGAACCCCAATGCCG-CCGGTCAGGTTCTCCGGCGATGCTCCGCGATGGTGCCCCGACG
** * * * * * *
11693098 --GAAAAATGTTGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGTCGTAACCCTTGGTCTGGTC
583 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
* * *
11693161 TG-TCTTAGACTGCGAAT-AACT-CGTATGCGTTAGACTGGG-ATGAACTCTGTATGCCTAAGTC
648 CGATCTTAGACTGGGAATGAACTCCGTATGC-TTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
11693222 AACGCACGAAACGAGCGTGCGGGGCTCAGCTGCGCCAGAAGGGC-AGAT-CGCAAGACCGAGGAT
712 AACCCACGAAACGAGCGTGCGGCGCTCAGCCG-GCCAGAGGGGCGGGATGCGCAAG-CCGGGGAT
* * * * * * * * * *
11693285 CAGTTGGG---CCCTTTTGAATG-TACTGATCCTGCTACCG-AACCCTC-GTC-GGTGCTGATCT
775 CGGTCGGGTCCCCCTCTAG-CTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGG-CCTGATCT
* * * * ***
11693343 TTGACTAGGAATG-ACT-TGTATGCCTAAGCCAACTCGATGAAACGA-------GGC-GTATGG
838 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * * *
11693397 CAGGCACGTACGCCGGCAGAGAGAGAGAGGGATGCGCAAAGCCG-GTGATCGAT-GCGTGGTTGG
1 CGGGCAC-TACGTCGGC-CAGAGAGA-CGGGATGCGC-AAGCCGTG-GATCGATAGGGTGGTAGG
*
11693460 TGGGTTTA-GCACATCTTCATATGTCTGCATGCCAATGGCCATTTTTGATGGCTTGTAAATTCAT
61 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT-GCCATTTTT-ATGGCTTGTAAATTCAT
* *
11693524 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTCTCACG
124 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * *
11693589 ATTTTTGAAACTTTTTGCGGGTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAA
189 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
11693654 CTAT-GTAGACATGATCCTTGTATTTTTGTCGGCATGCACAAAAAAATTCAGCTAAAAACTTGAA
254 CT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
11693718 GTGTACCAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
318 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
11693783 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATGAGGGA
383 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
11693848 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCCCCGGC
448 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-
* * * * * * * * *
11693913 CCCCCCGATCATTGAAACCCGAATACCGTCGGTCATGTTCT---TCG--G-T----GATGGTACC
512 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGCGATGGTGCC
*
11693968 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCGCGGT
577 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * * *
11694033 CTGGTCTGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTGGGAATGAACTCCGAATGCCT
642 CCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * ** * * *
11694098 AAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAGCCGGCCAGAGGGGAAGGATGCGTAAGTCGA
707 AAGTCAACCCACGAAACGAGCGTG-CGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * *
11694163 GGATCGGTCGGGTCCCCCACTA-CGTGCTACCGATCCTACTACCGTAACCCTCGATCTGGTCC-A
771 GGATCGGTCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGG-CCTG
* * * *
11694226 ATCTTAGACTGGGAATGGACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGACGGGCA
834 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
*
11694291 GA
899 GG
* * * * * *
11694293 AGGGCACTATGCCGGCCAGAGAGACGAGATGCGCAAGGCGTGGATGGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
11694358 TTAGGCACATATTCATATTTCTGCATTCCAATGTCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
11694423 TCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
*
11694488 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG-CCCAAACTTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * ** * * * **
11694552 GACGTGATCGTTGTATATTTTGTTGGTATGCGTAAAAACATTCACCTAAAAACTTGAACCGTACA
261 GACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
11694617 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
325 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
11694682 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAGGGGG
390 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
11694747 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCGCTCGGCCCCCCC
455 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGG-CCCCCC
* * * * * **
11694812 GATCATCGAAAACCCAATGCCGTCGGTCAGGTTCT---TC-A-G-T----GATGGTGCATCG-CG
518 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGCGATGGTGCCCCGACG
* * * * * *
11694866 AAGAAAAATGTGACACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGT-CTAGT
583 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA-T
* * * *
11694930 CCAATTTTAGACTGGGAATGAACTCCGTAAGCTTAGACTTGGGAATGAACTCCGTATGCCTAAAT
647 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGT
* * * ** * * *
11694995 CAACCCATGAAACGAGCGTGCGGGTGCTCAGTCAACCAGAGGGGTGGGATGCGTAAGCCGAGGAT
711 CAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * ** ** *
11695060 CGATCGGATCCCCCTCT-GCATGCTGCCGATCCTGCTG-TCGTAACCCTTAGTCTGGTTTGAACT
775 CGGTCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCT-GCAACCCTCGGTCTGGCCTGATCT
* * * * *
11695123 TAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-----TGAGCGGACGAG
838 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * *
11695178 CGGACACTACGCCGGCCAGAGAGACGAGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11695243 TTAGGGACATCTGCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
11695308 TCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
*
11695373 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG-CCCAAACTTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * * *
11695437 GACGTGATCCTTGTATATTTTGTTGGTATGCATAAAAACATTCACCTAAAAACTTGAACTGTACA
261 GACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
11695502 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
325 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
11695567 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAGGGGG
390 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
11695632 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTATACCCCCCGGCCCCCCCG
455 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCG
* * ** * * * *
11695697 ATCATCGAAACCTGAATACCGCCGGTCATGTTCT---TCG--G-T----GATGGTACCCCGACGA
519 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGCGATGGTGCCCCGACGA
* * * * * *
11695752 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCGCGGTCTGGTCT
584 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
*
11695817 GATCTTAGACTGGGAATGAATTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
649 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * * * *
11695882 CCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGAAGGATGCGTAAGTCGAGGATCGA
714 CCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * * ** *
11695947 TCGGGTCCCCCACTA-CGTGCTACCGATCCTACTACCGTAACCCTCAATCTGGTCC-AATCTTAG
778 TCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGG-CCTGATCTTAG
* * * * * *
11696010 ACTGGGAATGGACTCCGTACGCCTAAGCCAATCGACGAAACGAGCGGGCGGACGGGCAGA
841 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * *
11696070 AGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGGCGTGGATGGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11696135 TTAGGCACATCTTCATATTTCTGCATTCCAATGTCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
11696200 TCCCTTAAGCCTTCACGCT-AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTT
131 TCCCTTAAGCCTTCACG-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
11696264 GAAACTTTTTACGGTTCGGGGTTTTTTAAAATTTTTTCGGAAGGAGTTTTTGGCCCCAAACTTGG
195 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGG
* * * * * *
11696329 TAGACATCATCCTTTTATTTTTGTTGGCAAGCGCAAAAAAAATTCAGCTAAAAAATCGAAGTGTA
259 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
11696394 CAAGATTTTGAGCCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
323 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
11696459 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGCTTGATGAGGGATAGGG
388 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
11696524 GACCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
453 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCC
* * *
11696589 CCGATCGTCGGAACCCCAATGCC-CTCGGTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCT
516 CCGATCGTCGGAACCCCAATGCCGC-CGGTCAGGTTCTCCGGCGATGCTCCG-CGATGGTGCCCC
* * * * *
11696653 GGCGAAGAAAAAAGCGGCACCAACACATGCCCGAGCCCAACATGTGCTGCCACAACCCTCGGTCC
579 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * ** * *
11696718 -AGTTCAATCTTATACTGGGAATGAACTCTATTTGCTCAGACTGGGAATGAACTCCGTATGCCTA
644 GA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * **
11696782 AGTCAACTCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGTGGGATGCACAAGCCAAG
708 AGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * *** * *
11696847 GAT-TGACAGGGTCCTCCTCT-GCGTGCTGCTGATCCTACTGCTGCAACCTTTAATCCGGTCTGA
772 GATCGGTC-GGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGCCTGA
* * * *
11696910 TCTTAGACTGGGACTGAACTCCGTATGCCTAAGCCTACCGACGAAACGAGCGAGCTGGCGGGCGG
835 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
11696975 G
900 G
* * * *
11696976 CAGGCACTACATCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTATGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
11697041 TTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
11697106 TCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGCCGACTCGTTTTCTATTTTTCATGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
11697171 AAACTTTTTGCGGTTTGA-ATTTTTTTTAAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGT
196 AAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
11697235 AGACGTGATCCTTGTATATTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
260 AGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * *
11697299 AACATTTTGTGACCATTTGAAAAAAGTGACTCCATTTTAGACACTTTAATGGCTACTGGCAGGAA
324 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
11697364 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGG
389 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
11697429 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACAGCCCCCCCGACCCCC
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCG-GCCCC
* * *
11697494 CCGATCGTTGGAACCCCAATACCACCGGAT-AGGTTCT-C--CG--G-T----GATGGTGCCCCG
516 CCGATCGTCGGAACCCCAATGCCGCCGG-TCAGGTTCTCCGGCGATGCTCCGCGATGGTGCCCCG
** * *
11697548 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCTGAGCATGTGCTGTCAG-AACCCTCTGTCC
580 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CCGCAACCCTCGGTCC
* *
11697612 GATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
644 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
11697677 GTCAACCCACAAAACGAGCGTGCGGGAGCTCAGTCGGCCAGAAGGGTGGGATGCGCAAGCCGAGG
709 GTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * **
11697742 ATCGGTCGGG--------TA-C--C--CC--T-CTG-T-C-GCAACCCTTGGTTTGATCT-ACTC
773 ATCGGTCGGGTCCCCCTCTAGCTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGCCTGA-TC
* * * *
11697787 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCGAC-AAA--A-TGAGCGGGTGGGCGGG
837 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * * * * * *
11697848 TGGGCACTACGCCGGCCAGAGAGACGGGATGCACAGGCTGTGGATCAATAGGGTAGCAAGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
11697913 TTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGCATGGAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
11697978 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATC-ATTTTC
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-CGATTTTT
* * *
11698042 GAAACTTTTTACGGTTCCAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGT
195 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
11698107 AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
260 AGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
11698172 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGAAA
324 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
11698237 ACCTGTAAAATCTCAAATGCTCTATAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
389 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
11698302 GCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCTCGGCCCCC
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGG-CCCC
* * *
11698367 CCAATCGTTGGAACCCCAATGCCGCCAGTCAGGTTCT-C--CGA-------CGATGGTGCCCCGA
516 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGCGATGGTGCCCCGA
* * * * *
11698422 TGAAGAAAAATACGGCACCAGTACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGA
581 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA
* * *
11698487 TCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
646 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
11698552 CAACCCAC-AATACGAGCGTGCGGGAGCTCAGTCGGCCAGAGAGGCGGGGTGCGCAAGCCAGGGA
711 CAACCCACGAA-ACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * * * * * * *
11698616 TCGATCGAGT-CCCCTTTTGTGTGCTACCAATCCTACTGCCGCAACCCTCGGT-TCGGTCTAATA
774 TCGGTCGGGTCCCCCTCTAG-CTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCT-GGCCTGATC
* * * * *
11698679 TTAGACTAGGAATGAACTTCATATGCCTAAGCCAACCGAC-AAA--A-CGAGCGGACGGGCGGG
837 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * ** * *
11698739 TGGGCACTACGTCGGCTAGAGAGACAGGATGCACAAGTTGTGGATCGATAGGGTAGTAGGTGAGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
11698804 TTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATTG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
11698869 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTCTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
11698934 AAACTTTTTACGGTTCGATATTTTTTAAAATTTTTTTGGAAGGAGTTTT-GCCCCAAACTTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
11698998 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
261 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
11699063 GATTTTGTGACC-TTTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAA
326 GATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
11699127 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
390 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
11699192 CCAATATAAGGG-TAACGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTGGCCCCCCG
455 CCAATATAAGGGCCAA-GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* * * *
11699256 ATCGTCGGAACCCCAACGCCGTCGATCAAGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGACG
519 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGACG
* * * * *
11699321 AATAAAAATGCGACACCAGCACATGCCCGAGCCCAGAATGTGCTACCGTAACCCTCGGTCCGATC
583 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
* * *
11699386 CGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTA
648 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
11699451 ACCCACGAAACGAGTGTGCGGCGATCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
713 ACCCACGAAACGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * *
11699516 TCGGGTCCCCCTCTAGATGCTGCAGATCTTGCTGCTGCAACCCTCAGTTTGGCCTGATCTTAGAC
778 TCGGGTCCCCCTCTAGCTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGCCTGATCTTAGAC
* * * * *
11699581 TAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGAGTGGGCGGGCGGGCGGG
843 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
11699639 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11699704 TTAGGCACATCTTCATATTTCTGCGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
11699769 TCCCTTTAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATC-ATTTTC
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-CGATTTTT
* * * *
11699833 GAAACTTTTTATGGTTCCAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGT
195 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
11699898 AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
260 AGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
11699963 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGAAA
324 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
11700028 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
389 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
11700093 GCCAATATAAGGG-TAACGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTGGCCCCCC
454 GCCAATATAAGGGCCAA-GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * * *
11700157 GATCGTCAGAACCCCAACGCCGCCGATCAAGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGAC
518 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGAC
* * * * * *
11700222 GAACAAAAATGTGACACCAGCACATGCCCGAGCCCAGAATGTGCTACCGTAACCCTCGGTCCGAT
582 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
* * *
11700287 CCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTT
647 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* *
11700352 AACCCACGAAACGAGTGTGCGGCGATCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
712 AACCCACGAAACGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * *
11700417 GTCGGGTCCCCCTCTAGATGCTGCAGATCTTGCTGCTGCAACCCTCAGTTTGGCCTGATCTTAGA
777 GTCGGGTCCCCCTCTAGCTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGCCTGATCTTAGA
* * * * *
11700482 CTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGAGTGGGCGGGCGGCGGGCGGG
842 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-GGCGGGCGGG
* * *
11700544 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGAGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11700609 TTAGGCACATCTTCATATTTCTGCGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
11700674 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
*
11700739 AAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCCCAAACTTGGT
196 AAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
11700803 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT-AGCTAAAAACTCGAAGTGTACA
260 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
11700867 AGATTTTGTGACCATGTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCACCAAA
325 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
11700932 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
390 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * * *
11700997 CTAATATAAGGGCTAAGTACCAGCCCCCATCACACATCATATGCGCAAACACCCCTCCGACCCCC
455 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACACCCC-CCG-GCCCC
* * * * * * *
11701062 CCGATCGCCGAAACCCCAATGCTGCCAGAT-AGGTTCTCCGACGATGCTCCGGTGATGGTGCCTC
516 CCGATCGTCGGAACCCCAATGCCGCC-GGTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCCC
** * * *
11701126 GGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAA-CCT---T-C
579 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
*
11701186 G----G----T---CT--G---G---TCCG-AT-CTTAGATTGGGAATGAACTCCGTATGCCTAA
644 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
11701230 GTCAACCCACGAAACGAGCGTACGGGCGCTTAGCCGACCAGAGGGGTGGGATGCGTAAGTCGAGG
709 GTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * *
11701295 ATCGATCGAGTCCCCCTCTA-CGTGCTGCCGATGCTGTTG-TCACAACCCTTGGT-TCGGTCC-G
773 ATCGGTCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCT-GCAACCCTCGGTCT-GG-CCTG
** * * * *
11701356 ATCTTAGACTCAGAATGAACTCCGTATGCCTAGGCCAATCGATGAAACGA--------GCAGGCG
834 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
11701413 GG
899 GG
* ** * *
11701415 CGGGCACTACGCCGATCGGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGGTAGGTAGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** *
11701479 TTATGCACATCTTCATATTTCTGCATTTCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
11701544 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * *
11701609 AAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTAGCCCCAAACTTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * * *
11701674 GACCTGATCCTTGTATTTTTATTGACGTGGA-AAAAAAATTTCAGCTAAAAACTCGAAGAGTACA
261 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACA
* * *
11701738 AGATTTTGTGACCATTTGAAAAAAGTATCCCTATTTCAGATACTTTAATGGCTACTGGCAGCAAA
325 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
11701803 CCTGTAAAATC-CTAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGG
390 CCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
11701867 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCACACCCCCCGGCCCCCCC
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCC
* * * * * ** *
11701930 GATC-ACTGGAACCCTATTGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGAC-ACAGTGCCCCGG
518 GATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG-CGATGGTGCCCCGA
* ** * * *
11701993 TGAAGAAAAATGCATCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGACC-A
581 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA
* * * *
11702057 GTCCGATCTTAGATTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAC
646 -TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * ** * *
11702122 TCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCTACCAGAGGGGCGAGATGCGCAAGCCAGGGA
710 TCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * *
11702187 TTCGATCGGGTGCCCCTCTA-C-G-T---G---CTG-T-C-GTAACCCTCGGTCTGGTCTGATC-
774 -TCGGTCGGGTCCCCCTCTAGCTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGCCTGATCT
* * * *
11702239 TAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCAACGAATC-A---AGCGGGCGGGCGGG
838 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
11702298 CGGGCACTACGCCGGCCA-ATGAGACGGGATGCGCAAGCCATGGATCGATAGGTTGGTAGCTGGG
1 CGGGCACTACGTCGGCCAGA-GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
11702362 ATTAGGCACATCTTCTTATTTCTACATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
65 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
11702427 GTCCCTTAAGCCTTCACGAGAAGTTTCCTAGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
130 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * **
11702492 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTATT
195 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
11702557 CGATGTGATCC-TGTATTTTTGTTGGCATGCATAAAAAAATTCAGATAAAAACTCGAAGTGTACA
260 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
11702621 AGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAA
325 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
11702686 CC-GATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTGTCAAGGTTTGATGAGGGATA-GGG
390 CCTG-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
11702749 GACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCG
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
** * * * *
11702814 ATCACCGGAACCCCAATGCCACCGGTCAGGTTCCCCGACGATGCTTCGGCGATGGTGCCCCGACG
519 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC-TCCGCGATGGTGCCCCGACG
* * ** *
11702879 AAGAAAAATACGGCAGCAGCACATGCCCGAGCCCATTATGTGCTACCGCAACCCTCGGT---AT-
583 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
11702940 -GATC-----C---------A------AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
648 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
11702983 ACCTACGAAATGAGCGTGCGGGCACTCAACTGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCG
713 ACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * * *
11703048 GTCGGG-CCCCCTCT-GCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTTCAGTCC-AATCTGA
777 GTCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCTGCAACCCTC-GGTCTGGCCTGATCTTA
* * * *
11703110 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGA----GCGGACGGGTGGG
840 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * *
11703167 CAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCTATAAGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
11703232 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
11703297 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
11703362 AAACTTTTTACGGTTCGGGATTTTTTAAACTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
11703427 GACGTGATCCTTGTATTTTTATTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
261 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
11703492 GATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAAACACGTTAATGGCTACTGACAGCAAAC
326 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
11703557 CTGTAAAATCTCAAATGCTCTTTAAAGAGGTGTGAGTTCTTGAGGTTTGGTGAGGGATAGGGGGC
391 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
11703622 CAATATAAGGGCCAAGCACCAGCACCCATCTCATATCATGTGCGCACACCACCCCGGCCCCTCCG
456 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCC-CCG
* * * * * * * * **
11703687 ATCGCCGGAACCCTATTACCGCCAGTCAGGTTCTTCGACGATCCTCCGACGATGGTGCCCCGGTG
519 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG-CGATGGTGCCCCGACG
* * * * * *
11703752 AAGAAAAATGTGGCACCAGCACATACCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTG
583 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
* * *
11703817 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAGGGCTAAGT--
648 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * ** *
11703880 -----C---A--A-----C--CG---A-----CCAGAGGGATGGGATACGAAAGTTGGGGATCGA
713 ACCCACGAAACGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * ** **
11703920 TTGGGTCCCCTTCT-GCATGCTGCCAATCCTACTACTGCAACCCTCGGTCCAGTATGATCTTAGA
778 TCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGCCTGATCTTAGA
* * * * *
11703984 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGCAGGTGGGAGGG
842 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
*
11704043 CGGGCACTACGTCGGCCAGAGAGACGGGATGC-CTAAGCCGTGGATCGATAGGGTGGTTGGTGGG
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGC-AAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * * * *
11704107 TTTAGGTACATCTTTATATTTTTGCATGCCAATGCCATTTTTATGGCTTGGAAATTCATATAGTG
65 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * ** *
11704172 GTCCCTTAAGCCTTCACGTGAAGATTCATGGAAAGACGACTCGTTTTCTAGTTTTCATTATTTTC
130 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * **
11704237 AAAACTTTTTACAGTTCGAGATTTTTTACAATTTTCTCGGATGGAGTTTTAGG-CCCAAACTTAT
195 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGG
*
11704301 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
259 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * *
11704366 AAGATTTTGTGACCATTTGAAAAAACTGCCCCCATTTAAGACACTTTATTGGCTACTAGCAGCAA
324 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
11704431 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGACAGGGG
389 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
11704496 GCAAATATAAGGGCCAAGCACCAGCACCCATCTCACATCATGTGCGCACACCCCCTGGCCCCCCC
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCC
* * * * * * *
11704561 GATCGCCAGAACCGCAATGCTGTCGATCAAGTTCTCCGGCGATGCTCCTGCGATGGTGCCCCGAC
518 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGAC
** * * * * * * *
11704626 GAAGAAAAATGTTGCACCAACACAAGCCCGAGCCCAACATGTGCTACCACAACCCTCGGCCCAAT
582 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
* * * **
11704691 CCGATCTTAGACTGGGAATGAACTTCGCCATGCTT-G-CTGGGGATTGAA-TCTATATGCCGTAA
647 CCGATCTTAGACTGGGAATGAACTCCG-TATGCTTAGACT-GGGAATGAACTCCGTATGCC-TAA
* * * * * *
11704753 GTCAACCCACGAAATGAGCGTGCAGGCACTTCAG-TGGCCAGAGGGGCAGGATACGCAAGCCGAG
709 GTCAACCCACGAAACGAGCGTGC-GGCGC-TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * ** * *
11704817 GATTGGTCAGGTTTCCCCTTCTA-CGTACGGCCGATCTTGCTGCACACAACCCTCGGTGTGATCC
772 GATCGGTC-GG-GTCCCCCTCTAGC-TGCTGCCGATCCTGCTGC-TGCAACCCTCGGTCTG-GCC
** * *
11704881 CAATCTTAGACTGGGGAATTGAACTCCGTATGCCTAAGCCAACCGACGAACCGAGCGGAC---CG
832 TGATCTTAGACT-GGGAA-TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
*
11704943 GACGGG
895 GGCGGG
* * ** *
11704949 CAGGCACTACGTCGGGCCAGAG-GCAATGGGGATAAGCAAGCCGTGGATCGATAGGGTGGGAGGT
1 CGGGCACTACGTC-GGCCAGAGAG--A-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
11705013 GGGTTTGATGCACATTCTTCATATTTCTGGCATGCCAATGCCA-TTTTATGG-GTGTAGAATTCA
62 GGGTTT-AGGCACA-TCTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCTTGTA-AATTCA
* *
11705076 GTATAAGTGGTACCTTAAGGCCTTCACGTGAAGTTGTCATGGCAAGACGACTCGTTTTTCTA-TT
123 -TACAA-TGGTCCCTTAA-GCCTTCACGTGAAGTT-TCATGGCAAGACGACTCG-TTTTCTATTT
** * * *
11705140 TTCACGA-TTTTGAAACTTTTTGTGGTTTGGGATTTTTT-ATATTTTTTCGGAAGGAGTTTTGGC
183 TTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
11705203 CCCAAACTTGGTAGACGTGATCTTTGTATTTTTCTTGGCATGCACAAAAAAATTTAGCTAAAAAC
248 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
11705268 TCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
313 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
11705333 ACTGGCAGCAAACCTGTTAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
378 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
11705398 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
443 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * **
11705462 CCGGCCCCCTCTATCATCGGAACCCCAACACCGCCGGTCAGGTT-T-------T--T---C---G
508 CCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGCGATG
* *
11705511 GT--------GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC
572 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* ** * *
11705568 TCAGTCC-A---G-TC-----C----AAT---CT---TA-----A-ACAAGGAACGAACTACGTA
637 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * *
11705607 TGCCTATGTCAACACACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGTGGGATGCACAA
702 TGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * * *
11705672 GCCTGGGATCAGTCGGGTCCCCCTCT-GCGTGCCGTCGATCCTACTACTGCAACTCTCAGTCTGG
766 GCCGGGGATCGGTCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGG
* ** * * *
11705736 TCC-GATCTAAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGA--------GT
830 -CCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
11705792 GGGCGGG
894 GGGCGGG
* * * ** * * *
11705799 CGGGCACTATGTCGGCCAAAGTGGTGGGATGCGCAAGCCATGGATCGATAGGGTGGGAGGTGGGA
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
11705864 TTAGGCACATCTTCTTATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATAG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * **
11705929 TCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACAACTCGTTTTCTATTTTTCACAATTTTCA
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
11705994 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGTGTTTTGGCCCCAAACTTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
11706059 GACGTGATCCTTGTATTTTAGTTAGG-ATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACA
261 GACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
11706123 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
325 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
11706188 CCTGTAAAATCTCAAATGCT-TTTGAAGGGGGTGTGCGTTCTTGAGGCTTGATGAGGGATAGGGG
390 CCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
11706252 GCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCACGTGAGCACACCCCCCGACCCCCCC
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCC
** * * * * * * *
11706317 GATCACCGGAACCCCAACGCCGCCGATCAGGTTCTCTGGCGATCCTCCGAAGATGGAGCCCCGGC
518 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG-CGATGGTGCCCCGAC
* * * * *
11706382 GAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAACATGTGCTGCCACAACCCTCAGTCC-AG
582 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA-
* * * * *
11706446 TCTGATCTTAGACTGGGAATGAACTCCGGATGCTTAGACTGGAAATAAACTCTGTATGCCTAAGT
646 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
11706511 CAACCCACCAAACGAGCGCGTG-GGCGCTCAGCCAGCCAGAGGGGCGGGATGCGTAAGTCGAGGA
711 CAACCCACGAAACGA--GCGTGCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
** * * * * * * *
11706575 TCGACCGGGTCCCCCTC-AACGTGCTGTCGATCCTGCTACTGAAACCCTCAGTCCAGTCC-GATC
774 TCGGTCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCTGCAACCCTCGGT-CTGGCCTGATC
* * * *
11706638 TTAGACTAGGAATGAACTCCGTATGCCTAATCCAACCAACGAAACGAGCGGGCGGGCGGGCGTG
837 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* ** * *
11706702 CGGGCACTACGTCGGCCAGAAAGACGGGATATGCAAGTCGTCGATCGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * ** *
11706767 TTAGGCACTTCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
11706832 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCACGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * **
11706897 AAACTTTTTACGGTTCGGGATTTTTTAAAATTCTTTCGGAAGGAGTTTTCACCCCAAACTTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
11706962 GACGTGATCCTTGTATTTTTTTTGGCATGTATAAAAAAATTCAGCTAAAAACTCCAAGTGTACAA
261 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
11707027 GATGTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCAAAC
326 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
** * **
11707092 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGCCTTCTCGAGGTTTGTTGAGCAATAGGGGGC
391 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
11707157 CAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCGGCCCCCCGAT
456 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
* * * * *
11707222 CGTCGGAATCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAACGATGGTGCCCCGACGAG
521 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGACGAA
* ** *
11707287 GAAAAATGCAGCACCAGCACATGCTGGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCG----G
585 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCG
11707348 -TC-----C-------G------G--T-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
650 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** * ** * * *
11707391 CCACGAAATGAGCGTGCGGGCGCTTAATCGACTGGA-GGGCGGGATGCACAAGCCGGGAATCGGC
715 CCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * * *
11707455 CGGGTCCCCCTCT-GCATGCTACCGATCCTGCTACCGTAA-CCTCGGTCTGGTCC-GATCTTAGA
779 CGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGG-CCTGATCTTAGA
*
11707517 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GTGGGCGGGCGGG
842 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* ** *
11707572 CGAGCACTACGTCGGCCAGAGAGACAAGATGCGCAAGCCGTGGATCAATA-GGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11707636 TTAGGTACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* **
11707701 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCA
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
11707766 AAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGGAA-GAGTTTTGGCCCCAAACTTGG
196 AAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGG
* * *
11707829 TAGACGTGATCCTTGTATTTTTCTTGGTATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTAC
259 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
11707894 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCA
324 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
11707959 AACCTATAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTTGAGGTTTGATGAGGTATAGGG
388 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * *
11708024 GGCCAACATAACGGCCAAGTACCAGC-GCCATCGCACATCATCTGTGCACACCCCCCGGCCCCCC
453 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCC
* * * *
11708088 CGATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGCGCTCCG
517 CGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG-CGATGGTGCCCCG
* * * * *
11708152 ACGGAGAAAAATGCGGTACCAGCACATGCCCGAGCCCAGCATGTCCTGCCGTAACCCTCAGTCC-
580 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* ** *
11708216 AGTCCGATCTTAGACTGGGAATTAACTTTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
645 A-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
11708281 GTCAACCCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCGGGATGCACAAGTCGGGG
709 GTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * ** * * *
11708346 ATCGATCGGGT-CCCCTCTA-CGTGCTGTCGATCCTGCTACCACAACCCTTGGTGTGGTCTGATC
773 ATCGGTCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGCCTGATC
* * ** * * *
11708409 TTAGACTGGGAATAAACTCCGTATGCCTAAGCCAATCGATAAAACAAGCGGGTGGGCGGACGGG
837 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * *
11708473 CGGGCACTACGTCGACCAGAGAGAAGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
**
11708538 TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
11708603 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACAACTCGTTTTCTATTTTTCTTGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
11708668 AAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCC-AA------
196 AAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
11708725 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
260 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
11708790 AGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
325 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
11708855 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
390 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
11708920 CCAATATAAGGGCCAAGCACCAGCACCCGTCGCACATCATGTGCGTACA-CCCCC--CCCCCCGA
455 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* * ** * * * * *
11708982 TCGTTGGAACCCCAAT-TCATCGATCAGGTTCTTCGGCGAATGCTCGGTGATGGTGCCCCCGGCG
520 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG-ATGCTCCGCGATGGTG-CCCCGACG
* ** * * *
11709046 -AG-AAAATGCGTCCACCAGCACATGCCC-AAACTAGCAGGTGCGTGCCGTATA-CCTCGGTCC-
583 AAGAAAAATGCG-GCACCAGCACATGCCCGAGCCCAGCATGTGC-TGCCGCA-ACCCTCGGTCCG
* *
11709106 AGTCCGATCTTTAGACTGGGAGATGGAACTTCGTATGCTTACGGACTGGAAATGAACTCCGTATG
645 A-TCCGATC-TTAGACTGGGA-AT-GAACTCCGTATGCTTA--GACTGGGAATGAACTCCGTATG
* *
11709171 CCTAAAGTCAACCCAC-AAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAG
704 CCT-AAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * *
11709235 CCGGGGATCCGTTGGGTCCCCCTCT-GCGTGCTACCGATCCTGCT-ATCACAACCTTCGGTCTGG
767 CCGGGGATCGGTCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCT-GCAACCCTCGGTCTGG
* * * * * * * * *
11709298 TCC-AATCTTAGACTAGGAATGTACTCCATATGCGTAAGCAAACCAATGAAACGAGCGGGTGGGC
830 -CCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
11709362 GGGCGGG
894 GGGCGGG
* *
11709369 CGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGCT-GATCGATAGGGTGGTAGGTGGG
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG-TGGATCGATAGGGTGGTAGGTGGG
* *
11709433 TTTAGGCACATCTTCATATTTCTGCATGCCAATACCTTTTTTATGGCTTGTAAATTCATACAATG
65 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
11709498 GTCCCTTAACCCTTCACATGAAGTTTCATGGTAAGATGACTCGTTTTCTATTTTTCACGATTTTT
130 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
11709563 GTAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGTAGTTTTGGCCCCAAACATGGT
195 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
11709628 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTAAA
260 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
11709693 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
325 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
11709758 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
390 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
11709823 CCAATATAAGGGCCAAGCACCAGCACCCGTCGCACATCATGTGCGTACACCCCCCGGCCCCCCCG
455 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCG
* * ** * * * * * *
11709888 ATCGTTGGAACCCCAATGTCATCGATCAGGTTCTTCGGCAATGCTTCGGTGATGGTGCCCCGGCG
519 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC-TCCGCGATGGTGCCCCGACG
* * * * *
11709953 AAGAAAAATGCGTCACCAGCACATGCCCAAACCTAGCATGTGCTGCCGTAACCCTCGGTCC-AGT
583 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA-T
* *
11710017 CCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTC
647 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
11710082 AACCCACAAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATC
712 AACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
11710147 CGTTGGGTCCCCCTCT-GCGTGCTACCGATCCTGCT-ATCACAACCTTCGGTCTGGTCC-AATCT
776 GGTCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCT-GCAACCCTCGGTCTGG-CCTGATCT
* * * * * * * *
11710209 TAGACTAGGAATGTACTCCATATGCGTAAGCAAACCAATGAAA-GAGC-GGTGGGCGGGCGGG
838 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
11710270 CGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGCT-GATCGATAGGGTGGTAGGTGGG
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG-TGGATCGATAGGGTGGTAGGTGGG
* *
11710334 TTTAGGCACATCTTCATATTTCTGCATGCCAATACCTTTTTTATGGCTTGTAAATTCATA-AATG
65 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
11710398 GTCCCTTAACCCTTCACATGAAGTTTTCATGGTAAGATGACTCGTTTTTCTATTTTTCACGATTT
130 GTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTT
* * * * *
11710463 TTGTAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGTAGTTTTGGCCCCAAACATG
193 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
11710528 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTA
258 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
11710593 AAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
323 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
11710658 AACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA-GGAT--GG
388 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
11710720 TG-C-A-ATAAGGGCCAAGTACCA-CACCCA-CTGC-CACTCATGTGTGTACA---GCCGG-CCC
453 GGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACA-TCATGTGCGCACACCCCCCGGCCCC
* * * * ** ** *
11710775 GCTATCGTCTGAA--CCAA-G--TCCGGTCA-GTTCTCCGATGAT--TTGGTGATGGTG-CCCGA
516 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGCGATGGTGCCCCGA
* * *
11710831 CGAAGAAAAAAT--GTCACCAAG-A-ATGCCCGAGCCC-GCATGTGCTGTCGTAA-CC-CGGT-C
581 CGAAG-AAAAATGCGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* *
11710888 TACTCCGATCTTAG-CTAGGAATGAACTCC-TATGC----A-T---AA-G---T-C--AT-CC--
644 GA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * ** *
11710933 A-T------A--AAACGAGC-TGCGGCACTCAGTCTACCA-A--GGCGGGATGCGCAA-CCGAGG
708 AGTCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * *
11710984 ATCAGT-TGGTCCCCCTCTTA-CGTGCTGTCGATCGTGCTGCCGCAACCCTCGGTC-GTCC--AA
773 ATCGGTCGGGTCCCCCTC-TAGC-TGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGCCTGAT
* * * * * * * * *
11711044 CTTAG-CT-AGCATTAACTTCAT-TGCGTAAGCCAACCGA--TAAC-AACGGTGTGGG-GGGC-G
836 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-GCGGGCGGGCGG
*
11711101 A
900 G
* * *
11711102 CGGGCACTACGTCGACCAGAGAGACAGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11711167 TTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
11711232 TCCCTTATGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
11711297 AAACTTTTTACGGTTCGAGATTTTTTACAATTTTTTCAGAAGTAGTTTTGGCTCCAAACTTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
11711362 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAA-TCAGCTAAAAACTCAAAGTGTACA
261 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACA
*
11711426 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
325 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
11711491 CCTATAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
390 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** *
11711556 TAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGCCGCCCC
455 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC-CCCC
* * ** * * * *
11711621 GATCGTCGGAACCCCAACGTCGCCGGTCAGGTTCTCCGATGATGCTCTGGTGATGGTGCCCTGGC
518 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC-CGCGATGGTGCCCCGAC
* ** * * * * *
11711686 AAAGAAAAATGCATCACCAGCACATGCCTGAGCCCAGCAAGTGCTGCCGCAACCCTTGGTCTGGT
582 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
11711751 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
647 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** ** * *
11711816 AACCCATAAAACGAGCGTGCGG-GAACTCAATCGACCAGAGGGGCGGGATGCGCAAGTCGGGGAT
712 AACCCACGAAACGAGCGTGCGGCG--CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
*** * * * * *
11711880 CAACCGGGTCCCCCTCT-GCGTGCTGCCAATCCTGCTGCCGTAACCCTTGGTCTGGTCC-AATCT
775 CGGTCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGG-CCTGATCT
* * * * * * * *
11711943 TAGACTAGGAATGAACTCCATATGCGTAAGCAAATCGATGAAACGA--------GCAGGTGGG
838 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * * *
11711998 CGGGCACGACGTCGACCAAAGAGACGGGATGCGCAAGCCGCGGATGGATAGGGTGGTAGGTGGAT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11712063 TTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGACTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
11712128 TCCCTTAATCCTTCACATGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTCCATGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * *
11712193 TAACTTTTTATGGTTCAAAATTTTTTAAAATTTTTTCGAAAGTAGTTTTGGCCCCAAACTTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
11712258 GACCTGATCATTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACACAAAGTGTACAA
261 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
11712323 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATTGCTACTGGTAGCAAAC
326 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
11712388 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTAGAGGTTTGATGAGGGATAGGGGGC
391 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
11712453 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCCGGCCTCCCC
456 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCC-CCCC
* * * * * *
11712518 GATCGTCGGAACCCTAATGCCGCTGGTCAGGTTCTCTGGAGATGCTCTGGCGATGGTGCCCCGAT
518 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC-CGCGATGGTGCCCCGAC
* * ** *
11712583 GAAGAAAAATGCGGCACCAGCACATGCCCGGGCCTAGCATGTGCTTTCGCAACCCTTGGTCC-AG
582 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA-
* *
11712647 TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
646 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
11712712 CAACCCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGAGCGGGATGTGCAAGCCGGGGAT
711 CAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * * *
11712777 TGGCCGGATCACCCTCTATG-TGTTGCCGATCCTGCTGCTGCAACCCTAGATCTGGTCTAATCTT
775 CGGTCGGGTCCCCCTCTA-GCTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGCCTGATCTT
* * * * *
11712841 AGACTGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGAGCAGGCAGACGGGCGGG
839 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
*
11712903 CGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* **
11712968 TTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCATT-TAAAAATAAATACAA
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC-TTGT--AAATTCATACAA
* * * * *
11713032 TGGTCCCTTAAGCCTTCACGTGAAATTTCGTGGCAAGATGACTCGTTTCCTTTTTTTCACGATTT
128 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * * * **
11713097 TCAAAAAATTTGT--GGTTCGAGTTTTTTTAAAATTTTTTCGGAAGGCGTTTTGGTGCCAAACTT
193 T-TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* ***
11713160 GATACTTGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
257 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
11713224 ACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCAAACACTTTAATGGGC-ACTGGTAG
322 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGGCAG
* *
11713288 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATTG
386 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
11713353 GGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCG--CACCCCCCGGCCCC
451 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCC
* * * *
11713416 CCCGATCGTCGGAACCCCAATGTCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
515 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG-CGATGGTGCCCC
* *
11713481 -AGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCCCAACCCTCGGTC
579 GA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * * *
11713545 C-AGTCTGTTCTTAGACCGGGAATGGACTCCGTATGCTTTGACTGGGAATGAACTCC-TATGCCT
643 CGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
11713608 AAGTCAACCCACAAAACGAGCGTGCAGGCGTTCAGCCGGCCAAAGGGGTGGGATACGCAAGCCGG
707 AAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * * * * *
11713673 GGATTCGGTTGGGTCCCCCTCT-GTGTGCTACCGATCTTGCTGCCGTAACCCTTGTTCAGGTCTA
771 GGA-TCGGTCGGGTCCCCCTCTAG-CTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGCCTG
* * * * *
11713737 ATCTTAGGCTGGGACTCAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCAGGCAGGCGGGCG
834 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGCG
*
11713802 GACGGG
895 GGCGGG
* * * * *
11713808 CGGGTAGGCATTATGCCGGCCAGAGAGACGGGCTGCGCAAGCCATGGATCGATAGGGTGGATAGG
1 C--G--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG-TAGG
* **
11713873 TGGGTTGAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
61 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
11713938 AATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCATGACTACTCGTTTTCTATTTTTTACGAT
126 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
11714003 TTTTGAAACTTTTTTCGGTTC-AGGATATTTTAAAATTTTTTCGGAAAGTA-TTTTGGCCCCAAA
191 TTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCCCAAA
* * *
11714066 CTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAG
254 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
11714131 GGTACAAGATTTTGTGACCATTTGAAAAAATTATCCCCATTTCA-ACACTTTAATGGCTACTGGC
319 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
11714195 AGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
384 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
11714260 AGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCATATCATGTGCG--C-CCCCCAGG-C
449 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * * *
11714321 CCCCGATCGTCGGAACCCCAATCCCACCGATCAGGTTCTCCGACGATGCTCTGACGATGGTGCCC
514 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG-CGATGGTGCCC
* * * * *
11714386 CGATGAAGAAAAATGTGGCACCAGCAAATGCCCAAGCCCAGCATTTGCTGCCGCAA-CC-C--T-
578 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*
11714446 CG----G----T---CT--G---G---TCCG-AT-CTTAGATTGGGAATGAACTCCGTATGCCTA
643 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * * *
11714490 AGTCAACCCATGAAATGAGCGTGTGGGCGCTCAGTCGGCTAGAGGGACGGGATGCGCAAGTCAGG
708 AGTCAACCCACGAAACGAGCGTG-CGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * * *
11714555 GATCGGTCAGGTCCTCCT-TTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTGTGGTCTGAT
772 GATCGGTCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGCCTGAT
* * * * * *
11714619 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGGGCAGGTGGACGGGCGGG
836 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * **
11714684 CGGGCACTACGACAGCCAGAGAGACGGGATGCGCAAGCTATGGATCGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11714749 TTAGGCACAGCTTCATATTTCTGCATGCCAATGCCATTTTTA-GGACTTGTAAATTCATAAAATG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG-CTTGTAAATTCATACAATG
* * *
11714813 GTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
130 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * *
11714878 GAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCAAAACTTGGT
195 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
11714943 AGACATGATCCTT-TATTTTT-TCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
260 AGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
11715006 AAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
324 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
11715071 ACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTGTAGAGGTTTGATGAGGGATGGGGG
389 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
11715136 GCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCC
* * * *
11715201 CGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCCGA
517 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG-CGATGGTGCCCCGA
** * * *
11715266 CGAAGAAAAATGCGGTGCCAGCACATGCCCGATCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
581 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA
* **
11715331 TTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGTTGGGAATGAACTCCGTAT-CCTAAGT
646 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
11715395 CAACTCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGAT
711 CAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * * * *
11715460 CGATCAGATCCCCTTTTAAG-TGCTACCCATCCTGCTG-TCCCAACCCTCGGTCCGGTCTGATCT
775 CGGTCGGGTCCCCCTCT-AGCTGCTGCCGATCCTGCTGCT-GCAACCCTCGGTCTGGCCTGATCT
* * * * **
11715523 TATACTGGGAATGAACTCCATATGCCTAAGCCAATCGATGAAACGA--------GAAGGCGGG
838 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
** * * * *
11715578 CGGGCACTACACCGACTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGAT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * *
11715643 TTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATATAGTGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
11715708 TCCCTTAAGCCTTCATGTGAAGTTTCTTGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
11715773 AAAGTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * * * *
11715838 GACATGATCATTTTATTTTTTTTGGCTTGCACAAAAACATTCAGCTAAAAAATCGAAGTGTACAA
261 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
11715903 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTGGCAGCAAAC
326 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
11715968 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
391 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
11716033 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG--CACCCCCGGGCCCCTCGAT
456 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
** * * * * * **
11716096 CACCGAAATCCCAATGCCGCCGGTCATGTTCTCCAGCGATGCTCCAAC-ATGGTGCCCCGGTGAA
521 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGACGAA
* * * * ** * *
11716160 GAAAAATGTGTCACCAGCACATGCCCGAGCCCAACATGTGCTACCATAACCCTCGGTCCGGTCAG
585 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCG
* *
11716225 ATCTTAGACTGGGAATGAACTCCCTATGCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
650 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
11716290 CCAGGAAACAAGCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGAAAGTCGGGGATCGAT
715 CCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* ** * * * *
11716355 CAGGTCCCTTTCTATG-TGCTGCCGATCCTACT-ATCACAACCCTCGGTCTGGTCTGATCTTAGA
779 CGGGTCCCCCTCTA-GCTGCTGCCGATCCTGCTGCT-GCAACCCTCGGTCTGGCCTGATCTTAGA
* * * * * * *
11716418 CTGGGAATGAACTCCGTATACCTAAGCTAACTGACGAAACGAACGGGCGGGTGGGAGAG
842 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
11716477 TGGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTTGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
11716542 TTAGGTACATCTTTATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATC-GTG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA-CAATG
* * * * *
11716606 GTCCCTGAAGCCTTCACATGAAGATTCATGGAAAGACGACTCGTTTTCTATTTTTCACGATTTTC
130 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
11716671 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGGT
195 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
11716736 AGACGTGATCCTTGCATTTTTGTTGGCATGCACAAAACAATTCAGCAAAAAACTCGAAGTGTACC
260 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA-C
* *
11716801 AA-ATTTTGTGACCATTTGAAAAAAGTGCCCCCA-TTCAACACACTTTAATGGCTACTGGCAGCA
324 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCA
* **
11716864 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTTATAGGG
388 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
11716929 GGCCAATATAAGGGCCAAGCACCAGCACCCATCTCACATCATGTGCGCACACCCTCCCAGCCCCC
453 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCC-GGCCCC
** * * * *
11716994 CCGATC-TCCGGAACAGCAATGCCGTCAGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCA
516 CCGATCGT-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCCC
* ** * *
11717058 GGCGAAGAAAAATGTTGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCC
579 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * * **
11717123 AATCCGATCTTAGACTGGGAATTAACTCTGCATGCTTAGACTGGGAATGAACTCTATATGCCTAA
644 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
11717188 GTCAACCAACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGTGGGATGCACAAGCCGGGG
709 GTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * *
11717253 ATCGGTCGGGTCCCCTTCT-GCATGCTGCCAATCCTGCTACTGCAACCCTCGGTAC-GATCC-AA
773 ATCGGTCGGGTCCCCCTCTAGC-TGCTGCCGATCCTGCTGCTGCAACCCTCGGT-CTG-GCCTGA
** *
11717315 TCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGG
835 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
11717380 G
900 G
* ** * * * *
11717381 CAGGCACTACACCGACCAGAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTCGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11717446 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
11717511 TCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
11717576 AAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
11717641 TACGTGATCCTTGTA--TTGGATTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
261 GACGTGATCCTTGTATTTTTG-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
11717704 AGATTTTGTGACCATTTGAAAAAAGCGTCACCATTTCAGACACTTTAATAGCTACTGGCAGCAAA
325 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
11717769 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-CAGAGGTTTGATGAGGGATAGGGG
390 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGG
* * *
11717833 GCCAATATAAGGACCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCT
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
* * * * *
11717898 GATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGTGATGCTCCAGTGAAGGTGCCTCGAC
518 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGAC
* * * * * * *
11717963 AAAGAAAAATACGGAACCAGCACATGCCCGAGCCCAG-ATGTGCTACCGCAACCCTCGATCTGGT
582 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
*
11718027 CTGATCTTAGACTGGGAATGAACTCCGTATGC
647 CCGATCTTAGACTGGGAATGAACTCCGTATGC
11718059 CTAAGCCAAC
Statistics
Matches: 21490, Mismatches: 2436, Indels: 1446
0.85 0.10 0.06
Matches are distributed among these distances:
831 258 0.01
832 146 0.01
833 28 0.00
834 22 0.00
835 9 0.00
836 3 0.00
837 23 0.00
838 22 0.00
839 14 0.00
840 44 0.00
841 38 0.00
842 50 0.00
843 267 0.01
844 82 0.00
845 33 0.00
846 22 0.00
847 39 0.00
848 1 0.00
849 14 0.00
850 31 0.00
852 2 0.00
853 16 0.00
854 11 0.00
855 39 0.00
856 23 0.00
857 31 0.00
858 100 0.00
859 39 0.00
860 21 0.00
861 68 0.00
862 9 0.00
864 1 0.00
865 68 0.00
866 49 0.00
867 8 0.00
868 12 0.00
869 676 0.03
870 766 0.04
871 620 0.03
872 413 0.02
873 550 0.03
874 90 0.00
875 286 0.01
876 565 0.03
877 175 0.01
878 141 0.01
879 455 0.02
880 151 0.01
881 190 0.01
882 206 0.01
883 255 0.01
884 517 0.02
885 612 0.03
886 53 0.00
887 75 0.00
888 41 0.00
889 248 0.01
890 253 0.01
891 604 0.03
892 763 0.04
893 301 0.01
894 851 0.04
895 658 0.03
896 1030 0.05
897 579 0.03
898 17 0.00
899 498 0.02
900 343 0.02
901 579 0.03
902 1427 0.07
903 1369 0.06
904 747 0.03
905 755 0.04
906 694 0.03
907 242 0.01
908 168 0.01
909 323 0.02
910 145 0.01
911 31 0.00
912 49 0.00
913 266 0.01
914 39 0.00
915 24 0.00
916 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGCGATGGTGCCCCGACGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
GGTCCCCCTCTAGCTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGCCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
Found at i:11702093 original size:26 final size:26
Alignment explanation
Indices: 11702064--11702116 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11702054 CCAGTCCGAT
*
11702064 CTTAGATTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
11702090 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
11702116 C
1 C
11702117 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:11703857 original size:26 final size:26
Alignment explanation
Indices: 11703821--11703870 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
11703811 CTGGTGTGAT
11703821 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11703847 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
11703871 GGGCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11708260 original size:26 final size:26
Alignment explanation
Indices: 11708224--11708276 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11708214 CCAGTCCGAT
* *
11708224 CTTAGACTGGGAATTAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
11708250 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
11708276 C
1 C
11708277 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:11710062 original size:26 final size:26
Alignment explanation
Indices: 11710022--11710074 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11710012 CCAGTCCGAT
* *
11710022 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
11710048 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
11710074 C
1 C
11710075 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:11710077 original size:903 final size:903
Alignment explanation
Indices: 11705592--11718058 Score: 14912
Period size: 903 Copynumber: 14.0 Consensus size: 903
11705582 TCTTAAACAA
* * * * *
11705592 GGAACGAACTACGTATGCCTATGTCAACACACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * * * *** * *
11705657 GGGTGGGATGCACAAGCCTGGGATCAGTCGGGTCCCCCTCTGCGTGCCGTCGATCCTACTACTGC
66 GGGCGGGATGCGCAAGCCGGGGATCCGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGC
* * * * ** *
11705722 AACTCTCAGTCTGGTCCGATCTAAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
131 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAA
* ** * * * ** *
11705787 TGA----GT----GGGCGGGCGGGCACTATGTCGGCCAAAGTGGTGGGATGCGCAAGCCATGGAT
196 CGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
11705844 CGATAGGGTGGGAGGTGGGATTAGGCACATCTTCTTATTTTTGCATGCCAATGCCATTTTTATGG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * *
11705909 CTTGTAAATTCGTACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACAACTCGTTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* ** * * *
11705974 TCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAA-GT
391 TCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGA
*
11706038 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTTAGG-ATGCACAAAAAAATTCA
455 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCA
*
11706102 GCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
11706167 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTGAAGGGGGTGTGCGTTCTTG
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCG
* * *
11706231 AGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCACGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * ** * * * * *
11706296 AGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAACGCCGCCGATCAGGTTCTCTGGCGATC
713 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
* ** * * * *
11706361 CTCCGAAGATGGAGCCCCGGCGAAGAAAAATGCAG-CACCAGCACATGCCTGAGCCCAACATGTG
778 CTTCGGTGATGGTGCCCCGACGAAGAAAAATGC-GTCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * *
11706425 CTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGGATGCTTAGACTG
842 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
* * * * * *
11706487 GAAATAAACTCTGTATGCCTAAGTCAACCCACCAAACGAGCGCGTGGGCGCTCAGCC-AGCCAGA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGA
* * * * ** ** *
11706551 GGGGCGGGATGCGTAAGTCGAGGAT-CGACCGGGTCCCCCTCAACGTGCTGTCGATCCTGCTACT
65 GGGGCGGGATGCGCAAGCCGGGGATCCG-TCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACC
* * ** * * * * * *
11706615 GAAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAATCCAACCAACGA
129 GCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGA
* * * * * ** * *
11706680 AACGAGCGGGCGGGCGGGCGTGCGGGCACTACGTCGGCCAGAAAGACGGGATATGCAAGTCGTCG
194 AACGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* * **
11706745 ATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTTTGTGTGCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
11706810 GGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
11706875 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTCTTTCGGAAGG
389 TTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG
** * * *
11706940 AGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTATAAAAAAATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
11707005 GCTAAAAACTCCAAGTGTACAAGATGTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* **
11707070 TTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGCCTTCTCGA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* ** *
11707135 GGTTTGTTGAGCAATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
649 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
11707200 GCACAGCCCCCGG-CCCCCCGATCGTCGGAATCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGC
714 GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC
* *** * ** *
11707264 TCCAACGATGGTGCCCCGACGAGGAAAAATGCAG-CACCAGCACATGCTGGAGCCTAGCATGTGC
779 TTCGGTGATGGTGCCCCGACGAAGAAAAATGC-GTCACCAGCACATGCCCGAGCCCAGCATGTGC
11707328 TGCCGCAACCCTCGGTCC-G---G-TC-----C-------G------G--T-CTTAGACTG
843 TGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
* * ** **
11707363 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTAATCGACTGGA-
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * * * * *
11707427 GGGCGGGATGCACAAGCCGGGAATCGGCCGGGTCCCCCTCTGCATGCTACCGATCCTGCTACCGT
66 GGGCGGGATGCGCAAGCCGGGGATCCGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGC
* * *
11707492 AA-CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
131 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAA
* * * **
11707556 CGA----GTGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACAAGATGCGCAAGCCGTGGAT
196 CGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
11707617 CAATA-GGTGGTAGGTGGGTTTAGGTACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
11707681 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
** * *
11707746 TCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGGAA-G
391 TCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGA-GATTTTTTAAAATTTTTTC-GAAAGG
* * *
11707809 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGTATGCACAAAACAATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
11707874 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCAGACAC
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACAC
* * *
11707939 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTTG
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * *
11708004 AGGTTTGATGAGGTATAGGGGGCCAACATAACGGCCAAGTACCAGC-GCCATCGCACATCATCTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
11708068 TGCACACCCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
713 CGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
* ** * * *
11708132 GCTCCGACGATGGCGCTCCGACGGAGAAAAATGCGGT-ACCAGCACATGCCCGAGCCCAGCATGT
777 GCTTCGGTGATGGTGCCCCGACGAAGAAAAATGC-GTCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
11708196 CCTGCCGTAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATTAACTTTGTATGCTTAGACTG
841 GCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
* * * *
11708259 GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * * ** *
11708324 GGGCGGGATGCACAAGTCGGGGAT-CGATCGGGT-CCCCTCTACGTGCTGTCGATCCTGCTACCA
66 GGGCGGGATGCGCAAGCCGGGGATCCG-TCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCG
* * ** * * * *
11708387 CAACCCTTGGTGTGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAATCGATAAA
130 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAA
* * * * *
11708452 ACAAGCGGGTGGGCGGACGGGCGGGCACTACGTCGACCAGAGAGAAGGGATGCGTAAGCCGTGGA
195 ACGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
**
11708517 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
11708582 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACAACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** *
11708647 TTCTATTTTTCTTGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTC-AGAAG
390 TTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGA-GATTTTTTAAAATTTTTTCGA-AAG
* *
11708710 GGGTTTTGGCCCC-AA------AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
11708768 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
11708833 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
11708898 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCGTCGCACATCATGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
11708963 CGTACA--CCCC--CCCCCCCGATCGTTGGAACCCCAAT-TCATCGATCAGGTTCTTCGGCGAAT
713 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG-AT
* ** * *
11709023 GC-TCGGTGATGGTGCCCCCGGCG-AG-AAAATGCGTCCACCAGCACATGCCC-AAACTAGCAGG
777 GCTTCGGTGATGGTG-CCCCGACGAAGAAAAATGCGT-CACCAGCACATGCCCGAGCCCAGCATG
*
11709084 TGCGTGCCGTATA-CCTCGGTCCAGTCCGATCTTTAGACTGGGAGATGGAACTTCGTATGCTTAC
840 TGC-TGCCGCA-ACCCTCGGTCCAGTCCGATC-TTAGACTGGGA-AT-GAACTTCGTATGCTTA-
11709148 GGACTG
899 -GACTG
* *
11709154 GAAATGAACTCCGTATGCCTAAAGTCAACCCAC-AAACGAGCGTGCGGGCACTCAGCCGACCAGA
1 GGAATGAACTCCGTATGCCT-AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGA
* * *
11709218 GGGGCGGGATGCGCAAGCCGGGGATCCGTTGGGTCCCCCTCTGCGTGCTACCGATCCTGCTATCA
65 GGGGCGGGATGCGCAAGCCGGGGATCCGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCG
* * * * * *
11709283 CAACCTTCGGTCTGGTCCAATCTTAGACTAGGAATGTACTCCATATGCGTAAGCAAACCAATGAA
130 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAA
11709348 ACGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGCT-G
195 ACGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCG-TGG
* *
11709412 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCTTTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * * *
11709477 GGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACATGAAGTTTCATGGTAAGATGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
11709542 TTTCTATTTTTCACGATTTTTGTAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGT
389 TTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG
* * *
11709607 AGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
11709672 GCTAAAAACTCAAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
11709737 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
11709802 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCGTCGCACATCATGTGC
649 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * * *
11709867 GTACACCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGTCATCGATCAGGTTCTTCGGCAATGC
714 GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC
* * * *
11709932 TTCGGTGATGGTGCCCCGGCGAAGAAAAATGCGTCACCAGCACATGCCCAAACCTAGCATGTGCT
779 TTCGGTGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
11709997 GCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
844 GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
* * *
11710057 GAAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * *
11710122 GGGCGGGATGCGCAAGCCGGGGATCCGTTGGGTCCCCCTCTGCGTGCTACCGATCCTGCTATCAC
66 GGGCGGGATGCGCAAGCCGGGGATCCGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGC
* * * * * *
11710187 AACCTTCGGTCTGGTCCAATCTTAGACTAGGAATGTACTCCATATGCGTAAGCAAACCAATGAAA
131 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAA
11710252 -GAGC-GGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGCT-GA
196 CGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCG-TGGA
* *
11710314 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCTTTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * *
11710379 GCTTGTAAATTCATA-AATGGTCCCTTAACCCTTCACATGAAGTTTTCATGGTAAGATGACTCGT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCG-
*
11710443 TTTTCTATTTTTCACGATTTTTGTAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
388 TTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
* * *
11710508 TAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTC
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
11710573 AGCTAAAAACTCAAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
11710638 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
11710703 AGGTTTGATGA-GGAT--GGTG-C-A-ATAAGGGCCAAGTACCA-CACCCA-CTGC-CACTCATG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACA-TCATG
* * * * * * *
11710759 TGTGTACA---GCCGG--CCCGCTATCGTCTGAA--CCAA-GTC--CGGTCA-GTTCT-C--CGA
711 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
* *
11710810 TGATTTGGTGATGGTG-CCCGACGAAGAAAAAAT--GTCACCAAG-A-ATGCCCGAGCCC-GCAT
776 TGCTTCGGTGATGGTGCCCCGACGAAG-AAAAATGCGTCACC-AGCACATGCCCGAGCCCAGCAT
* * * * * *
11710869 GTGCTGTCGTAA-CC-CGGTCTACTCCGATCTTAG-CTAGGAATGAAC-TCCTATGC----A-T-
839 GTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
* * *
11710924 --AA-G---T-C--AT-CC--A-T------A--AAACGAGC-TGC-GGCACTCAGTCTACCA-A-
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * * * ** * *
11710964 -GGCGGGATGCGCAA-CCGAGGATCAGT-TGGTCCCCCTCTTACGTGCTGTCGATCGTGCTGCCG
66 GGGCGGGATGCGCAAGCCGGGGATCCGTCGGGTCCCCCTC-TGCGTGCTACCGATCCTGCTACCG
* * * * *
11711026 CAACCCTCGGTC--GTCCAA-CTTAG-CT-AGCATTAACTTCAT-TGCGTAAGCCAACCGAT--A
130 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAA
* * * * *
11711083 AC-AACGGTGTGGG-GGGC-GACGGGCACTACGTCGACCAGAGAGACAGGATGCGCAAGCCGCGG
195 ACGAGCGG-GTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* *
11711145 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
11711210 GGCTTGTAAATTCATACAATGGTCCCTTATGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
11711275 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTACAATTTTTTC-AGAAG
389 TTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGA-AAG
* *
11711339 TAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAA-T
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATT
*
11711403 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
517 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
11711468 CTTTAATGGCTACTGGTAGCAAACCTATAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* **
11711533 AAGGTTTGATGAGGGATAGGGGGTAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * **
11711598 GCGTACACCCCCCCGGCCGCCCCGATCGTCGGAACCCCAACGTCGCCGGTCAGGTTCTCCGATGA
712 GCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
* * * * * *
11711663 TGC-TCTGGTGATGGTGCCCTGGCAAAGAAAAATGCATCACCAGCACATGCCTGAGCCCAGCAAG
776 TGCTTC-GGTGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGCATG
* ** *
11711727 TGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
840 TGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
** ** **
11711791 GGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGAACTCAATCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* *** * * * *
11711856 GGGCGGGATGCGCAAGTCGGGGATCAACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGT
66 GGGCGGGATGCGCAAGCCGGGGATCCGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGC
* * * * *
11711921 AACCCTTGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCATATGCGTAAGCAAATCGATGAAA
131 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAA
* * * * *
11711986 CGAGCAGGT--------GGGCGGGCACGACGTCGACCAAAGAGACGGGATGCGCAAGCCGCGGAT
196 CGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
11712043 GGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGA
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * *
11712108 CTTGTAAATTCATACAATGGTCCCTTAATCCTTCACATGAAGTTTCATGGCAAGACGACCCGTTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * * *
11712173 TCTATTTTCCATGATTTTTGTAACTTTTTAT-GGTTCAAAATTTTTTAAAATTTTTTCGAAAGTA
391 TCTATTTTTCACGATTTTTGAAACTTTTT-TCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGA
* * *
11712237 GTTTTGGCCCCAAACTTGGTAGACCTGATCATTGTATTTTTGTTGGCATGCATAAAAAAATTCAG
455 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
11712302 CTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
520 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * *
11712367 TGATTGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTAGAG
585 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
11712432 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
650 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
11712497 CACACCCCTCCCGGCCTCCCCGATCGTCGGAACCCTAATGCCG-CTGGTCAGGTTCTCTGGAGAT
715 CACA-CCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGAT
* * * * *
11712561 GC-TCTGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGGGCCTAGCATGT
777 GCTTC-GGTGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGCATGT
** * *
11712625 GCTTTCGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTG
841 GCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTG
* * *
11712688 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * ** * * * ** * * * *
11712753 GAGCGGGATGTGCAAGCCGGGGATTGGCCGGATCACCCTCTATGTGTTGCCGATCCTGCTGCTGC
66 GGGCGGGATGCGCAAGCCGGGGATCCGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGC
* * * * *
11712818 AACCCTAGATCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAA
131 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAA
* ** * * * *
11712883 CGAGCAGGCAGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGAT
196 CGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
11712948 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
** * * *
11713013 CATT-TAAAAATAAATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCGTGGCAAGATGACTCG
326 C-TTGT--AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * ** ** * * *
11713077 TTTCCTTTTTTTCACGATTTTCAAAAAATTTGT-GGTTCGAGTTTTTTTAAAATTTTTTCGGAAG
388 TTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
* ** * ***
11713141 GCGTTTTGGTGCCAAACTTGATACTTGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTC
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
11713205 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCAAACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
11713270 TTTAATGGGC-ACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
583 TTTAAT-GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
11713334 AAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
11713399 GCG--CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTCGATCAGGTTCTCCGACGAT
712 GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
* ** *
11713462 GCTCCGACGATGGTGCCCC-AGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGT
777 GCTTCGGTGATGGTGCCCCGA-CGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * * *
11713526 GCTGCCCCAACCCTCGGTCCAGTCTGTTCTTAGACCGGGAATGGACTCCGTATGCTTTGACTG
841 GCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
* * * * *
11713589 GGAATGAACTCC-TATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGTTCAGCCGGCCAAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * * * * * *
11713653 GGGTGGGATACGCAAGCCGGGGATTCGGTTGGGTCCCCCTCTGTGTGCTACCGATCTTGCTGCCG
66 GGGCGGGATGCGCAAGCCGGGGA-TCCGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCG
* * * * * * * * *
11713718 TAACCCTTGTTCAGGTCTAATCTTAGGCTGGGACTCAACTCCGTATGCCTAAGCCAACCGATGAA
130 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAA
* * * * * * *
11713783 ATGAGCAGGCAGGCGGGCGGACGGGCGGGTAGGC-ATTATGCCGGCCAGAGAGACGGGCTGCGCA
195 ACGAGC--G--GGTGGGCGGGCGGGCGGGCA--CTA-CAT--CGACCAGAGAGACGGGATGCGCA
* * **
11713847 AGCCATGGATCGATAGGGTGGATAGGTGGGTTGAGGCACATCTTCATATTTCTGTGTGCCAATGC
251 AGCCGTGGATCGATAGGGTGG-TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
11713912 CATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCATG
315 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
11713977 ACTACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTTCGGTTC-AGGATATTTTAAAATTT
380 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGA-GATTTTTTAAAATTT
* * *
11714041 TTTCGGAAAGTA-TTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCAA
444 TTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
11714105 AAAAAAATTCAGCTAAAAACTCAAAGGGTACAAGATTTTGTGACCATTTGAAAAAATTATCCCCA
508 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
11714170 TTTCA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTG
573 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
11714234 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGC
638 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * ** *
11714299 ATATCATGTGCG--C-CCCCCAGG--CCCCCGATCGTCGGAACCCCAATCCCACCGATCAGGTTC
703 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* ** * * * * *
11714359 TCCGACGATGC-TCTGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCAAATGCCCAAGC
768 TCCGGCGATGCTTC-GGTGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGC
*
11714423 CCAGCATTTGCTGCCGCAA-CC-C--T-C-G---G----T---CT-GG--T---C--CG-AT-CT
832 CCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCT
*
11714462 TAGATTG
897 TAGACTG
* * * * * *
11714469 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCGCTCAGTCGGCTAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * * * * * * *
11714534 GGACGGGATGCGCAAGTCAGGGATCGGTCAGGTCCTCCTTTGCGTGCTACCGATCCTGCTGCCGC
66 GGGCGGGATGCGCAAGCCGGGGATCCGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGC
* * ** **
11714599 AACCCTCAGTGTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAA
131 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAA
* * * **
11714664 CGGGCAGGTGGACGGGCGGGCGGGCACTACGA-C-AGCCAGAGAGACGGGATGCGCAAGCTATGG
196 CGAGCGGGTGGGCGGGCGGGCGGGCACTAC-ATCGA-CCAGAGAGACGGGATGCGCAAGCCGTGG
*
11714727 ATCGATAGGGTGGTAGGTGGGTTTAGGCACAGCTTCATATTTCTGCATGCCAATGCCATTTTTA-
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
11714791 GGACTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACGACTCG
324 GG-CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
11714856 TTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAG
388 TTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
* * *
11714921 GAGTTTTGGTCCAAAACTTGGTAGACATGATCCTT-TATTTTT-TCTGGCATGCACAAAAAAATT
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATT
* *
11714984 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAAACA
517 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
11715049 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTGTA
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
11715114 GAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
11715179 GCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGACA
712 GCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCG
* ** * *
11715243 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGT-GCCAGCACATGCCCGATCCCAGCAT
775 ATGCTTCGGTGATGGTGCCCCGACGAAGAAAAATGC-GTCACCAGCACATGCCCGAGCCCAGCAT
** * * **
11715307 GTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGTTG
839 GTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
* * * *
11715372 GGAATGAACTCCGTAT-CCTAAGTCAACTCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * * * * ** * *
11715436 GGGCGGGATGCGTAAGCCGGGGAT-CGATCAGATCCCCTTTTAAGTGCTACCCATCCTGCTGTCC
66 GGGCGGGATGCGCAAGCCGGGGATCCG-TCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT-ACC
* ** * *
11715500 -CAACCCTCGGTCCGGTCTGATCTTATACTGGGAATGAACTCCATATGCCTAAGCCAATCGATGA
129 GCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGA
** * * *
11715564 AACGA--------GAAGGCGGGCGGGCACTACACCGACTAGAGAGACAGGATGCGCAAGCCGTGG
194 AACGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
11715621 ATCGATAGGGTGGTAGGTGGATTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * * * *
11715686 GGCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGCAAGACGACTTGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
11715751 TTTCTATTTTTCACGATTTTCGAAAGTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC-AGAAG
389 TTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGA-AAG
* * * * * *
11715815 GAGTTTTGGCCCCAAACTTGGTAGACATGATCATTTTATTTTTTTTGGCTTGCACAAAAACATTC
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
11715880 AGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
11715945 TGTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
11716010 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * ** * * * * *
11716075 TG--CA-CCCCCGGGCCCCTCGATCACCGAAATCCCAATGCCGCCGGTCATGTTCTCCAGCGATG
713 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
**** ** * *
11716137 C-TCCAACATGGTGCCCCGGTGAAGAAAAATGTGTCACCAGCACATGCCCGAGCCCAACATGTGC
778 CTTCGGTGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGCATGTGC
* ** * * * * *
11716201 TACCATAACCCTCGGTCCGGTCAGATCTTAGACTGGGAATGAACTCCCTATGCTGAGACTG
843 TGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
* * * * *
11716262 GGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACAAGCATGCGGGCGCTCAACCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * * * ** ** * * * *
11716327 GGGCAGGATGCGAAAGTCGGGGAT-CGATCAGGTCCCTTTCTATGTGCTGCCGATCCTACTATCA
66 GGGCGGGATGCGCAAGCCGGGGATCCG-TCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCG
** * * * * *
11716391 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCTAACTGACGAA
130 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAA
* * * * * * * * * *
11716456 ACGAACGGGCGGGTGGGAGAGTGGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTAGA
195 ACGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
11716521 TCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTTATATTTTTGCATGCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * * *
11716586 GCTTGTAAATTCATATC-GTGGTCCCTGAAGCCTTCACATGAAGATTCATGGAAAGACGACTCGT
325 GCTTGTAAATTCATA-CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
** * * * * *
11716650 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGATGG
389 TTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG
* *
11716715 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCACAAAACAATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
11716780 GCAAAAAACTCGAAGTGTACCAA-ATTTTGTGACCATTTGAAAAAAGTGCCCCCA-TTCAACACA
519 GCTAAAAACTCGAAGTGTA-CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACA
*
11716843 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
** * *
11716908 GAGGTTTGATGAGTTATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCTCACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* ** *
11716973 GCGCACACCCTCCCAGCCCCCCCGATC-TCCGGAACAGCAATGCCGTCAGTCAGGTTCTCCGGCG
712 GCGCACACCC-CCCGGCCCCCCCGATCGT-CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * * * *
11717037 ATGCTCCGGTGATGGTGCCCAGGCGAAGAAAAATG-TTGCACCAGCACATGCCTGAGCCCAGCAT
775 ATGCTTCGGTGATGGTGCCCCGACGAAGAAAAATGCGT-CACCAGCACATGCCCGAGCCCAGCAT
* * * *
11717101 GTGCTGCCGTAACCCTCGGTCCAATCCGATCTTAGACTGGGAATTAAC-TCTGCATGCTTAGACT
839 GTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACT
11717165 G
903 G
** * *
11717166 GGAATGAACTCTATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
* * * * * * * *
11717231 GGGTGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCTTCTGCATGCTGCCAATCCTGCTACTGC
66 GGGCGGGATGCGCAAGCCGGGGATCCGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGC
* * *
11717296 AACCCTCGGTAC-GATCCAATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGAA
131 AACCCTCGGT-CTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAA
** * * * *
11717360 ACGAGCGGACGGGCGGGCGGGCAGGCACTACACCGACCAGAGAGATGGGATGCACAAGCCGTGGA
195 ACGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
11717425 TCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * *
11717490 ACTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGACGACTCATT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
11717555 TTCTATTTTTCACAATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCGGAAGGA
390 TTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGA
* * *
11717620 GTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTA--TTGGATTGACATGCACAAAAAAATTCA
455 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG-TTGGCATGCACAAAAAAATTCA
* *
11717683 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCACCATTTCAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
11717748 TTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-CAG
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-G
* *
11717812 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCACACATCATGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
11717877 CGCACACCCCCCCGG-CCCCCTGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGTGAT
713 CGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
* * * * * * **
11717941 GCTCCAGTGAAGGTGCCTCGACAAAGAAAAATACGGAACCAGCACATGCCCGAGCCCAG-ATGTG
777 GCTTCGGTGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGCATGTG
* * ** * *
11718005 CTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
842 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
11718059 CTAAGCCAAC
Statistics
Matches: 10124, Mismatches: 1133, Indels: 624
0.85 0.10 0.05
Matches are distributed among these distances:
830 1 0.00
831 258 0.03
832 146 0.01
833 28 0.00
834 23 0.00
835 9 0.00
836 3 0.00
837 22 0.00
838 26 0.00
839 13 0.00
840 38 0.00
841 14 0.00
842 4 0.00
843 1 0.00
844 26 0.00
845 3 0.00
846 12 0.00
847 3 0.00
848 1 0.00
849 6 0.00
850 5 0.00
851 1 0.00
852 1 0.00
853 20 0.00
854 10 0.00
855 7 0.00
856 11 0.00
857 15 0.00
858 4 0.00
859 16 0.00
860 12 0.00
861 7 0.00
864 1 0.00
865 3 0.00
866 1 0.00
868 1 0.00
869 309 0.03
870 369 0.04
871 314 0.03
872 40 0.00
873 9 0.00
874 73 0.01
875 80 0.01
876 81 0.01
877 121 0.01
878 13 0.00
879 10 0.00
880 123 0.01
881 86 0.01
882 2 0.00
883 2 0.00
884 6 0.00
885 6 0.00
886 2 0.00
887 4 0.00
888 14 0.00
889 23 0.00
890 210 0.02
891 248 0.02
892 8 0.00
893 40 0.00
894 408 0.04
895 599 0.06
896 922 0.09
897 427 0.04
898 7 0.00
899 462 0.05
900 112 0.01
901 530 0.05
902 841 0.08
903 1160 0.11
904 526 0.05
905 354 0.03
906 169 0.02
907 123 0.01
908 160 0.02
909 242 0.02
910 137 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
GGGCGGGATGCGCAAGCCGGGGATCCGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGC
AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAA
CGAGCGGGTGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTT
CGGTGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
Found at i:11711785 original size:26 final size:26
Alignment explanation
Indices: 11711756--11711808 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11711746 CTGGTCCGAT
11711756 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11711782 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11711808 C
1 C
11711809 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11712682 original size:26 final size:26
Alignment explanation
Indices: 11712653--11712705 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11712643 CCAGTCTGAT
*
11712653 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11712679 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11712705 C
1 C
11712706 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11716266 original size:26 final size:26
Alignment explanation
Indices: 11716230--11716279 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11716220 GTCAGATCTT
11716230 AGACTGGGAATGAACTCCCTATGCTG
1 AGACTGGGAATGAACTCCCTATGCTG
*
11716256 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCCTATGC
11716280 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCCTATGCTG
Found at i:11717183 original size:26 final size:26
Alignment explanation
Indices: 11717131--11717183 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11717121 CCAATCCGAT
* *
11717131 CTTAGACTGGGAATTAACTCTGCATG
1 CTTAGACTGGGAATGAACTCTACATG
*
11717157 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTACATG
11717183 C
1 C
11717184 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTACATG
Found at i:11717500 original size:904 final size:901
Alignment explanation
Indices: 11714460--11718051 Score: 4707
Period size: 904 Copynumber: 4.0 Consensus size: 901
11714450 CTGGTCCGAT
* * * * **
11714460 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * *
11714525 CGGCTAGAGGGACGGGATGCGCAAGTCAGGGATCGGTCAGGTCCTCCTTTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCAGGTCC-CCTTTGCATGCTACCGATCC
*
11714590 TGCTGC-CGCAACCCTCAGTGT-GGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
130 TGCTACTCGCAACCCTC-G-GTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* * * * *
11714653 AACCGACAAAACGGGCAGG-TGGACGGGCGGGCGGGCACTACGACAG-CCAGAGAGACGGGATGC
193 AACCGACGAAACGAGC-GGACGGGCGGGCGGGCGGGCACTAC-ACCGACCAGAGAGACGGGATGC
** *
11714716 GCAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAGCTTCATATTTCTGCATGCCAAT
256 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
11714781 GCCATTTTTAGGACTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGA-GAAGTTTCATGGC
321 GCCATTTTTATGACTTGTAAATTCATATAATGGTCCCTTAAGCCTTCAC-ATGAAGTTTCATGGC
* * *
11714845 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTTGGGATTTTTTAAAAT
385 AAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * *
11714910 TTTTTCGAAAGGAGTTTTGGTCCAAAACTTGGTAGACATGATCCTT-TATTTTT-TCTGGCATGC
450 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT-TGGCATGC
* *
11714973 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCC
514 ACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
11715038 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGG
579 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
11715103 TGTGAGTTGTAGAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACC
644 TGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
11715168 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGG
709 GCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCTCCGGAACCCCAATGCCGCCGGTCAGG
* * * **
11715233 TTCTCCGACAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGTGCCAGCACATGCCCGA
773 TTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * *
11715298 TCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
838 GCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT-CGCATG
** * *
11715363 CTTAGGTTGGGAATGAACTCCGTAT-CCTAAGTCAACTCACGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
** * ** *
11715427 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCAGATCCCCTTTTAAGTGCTACCCATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCAGGTCCCCTTTGCA-TGCTACCGATCC
* * *
11715492 TGCT-GTCCCAACCCTCGGTCCGGTCTGATCTTATACTGGGAATGAACTCCATATGCCTAAGCCA
130 TGCTACTCGCAACCCTCGGT-CGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* * * * *
11715556 ATCGATGAAACGA---GA-----AGGCGGGCGGGCACTACACCGACTAGAGAGACAGGATGCGCA
194 ACCGACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCA
* * * *
11715613 AGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGTACATCTTCATATTTCTACGTGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * ** *
11715678 ATTTTTATGGCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGCAAGA
324 ATTTTTATGACTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
* * * *
11715743 CGACTTGTTTTCTATTTTTCACGATTTTCGAAAGTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
11715808 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCATTTTATTTTTTTTGGCTTGCACAAA
454 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
*
11715873 AACATTCAGCTAAAAAA-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAATTCAGC-AAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
11715937 TCAGACACTGTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
11716002 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
11716067 ATCATGTGTG--CA-CCCCCGGGCCCCTCGATCACCGAAATCCCAATGCCGCCGGTCATGTTCTC
713 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCTCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** ** * *
11716129 CAGCGATGCTCC-AACATGGTGCCCCGGTGAAGAAAAATGTGTCACCAGCACATGCCCGAGCCCA
778 CGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* ** * *
11716193 ACATGTGCTACCATAACCCTCGGTCCGGTCAGATCTTAGACTGGGAATGAACTCCCTATG
843 GCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCGC-ATG
* * * *
11716253 CTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACAAGCATGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * *
11716318 CGGCCAGAGGGGCAGGATGCGA-AAGTCGGGGATCGATCAGGT-CCCTTT-CTATGTGCTGCCGA
66 CGGCCAGAGGGGCGGGATGC-ACAAGCCGGGGATCGATCAGGTCCCCTTTGC-A--TGCTACCGA
* * * *
11716380 TCCTACTA-TCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAG
127 TCCTGCTACTCGCAACCCTCGGTC-GGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAG
* * * * * * * * ** * *
11716444 CTAACTGACGAAACGAACGGGCGGGTGGGAGAGTGGGCACTACGTCGGCCAGAAAGACGGGATGC
191 CCAACCGACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGC
* * * * *
11716509 GCAAGCCGTAGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTTATATTTTTGCATGCCAAT
256 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* ** * * *
11716574 GCCATTTTTATGGCTTGTAAATTCATATCGTGGTCCCTGAAGCCTTCACATGAAGATTCATGGAA
321 GCCATTTTTATGACTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCA
*
11716639 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
386 AGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * *
11716704 TTTTTGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCAC
451 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
* *
11716769 AAAACAATTCAGCAAAAAACTCGAAGTGTACCAA-ATTTTGTGACCATTTGAAAAAAGTGCCCCC
516 AAAAAAATTCAGCAAAAAACTCGAAGTGTA-CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
11716833 A-TTCAACACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
580 ATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* ** *
11716897 TGTGAGTTCTTGAGGTTTGATGAGTTATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATC
644 TGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * ** * *
11716962 TCACATCATGTGCGCACACCCTCCCAGCCCCCCCGATCTCCGGAACAGCAATGCCGTCAGTCAGG
709 GCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCTCCGGAACCCCAATGCCGCCGGTCAGG
* * * ** *
11717027 TTCTCCGGCGATGCTCCGGTGATGGTGCCCAGGCGAAGAAAAATGTTGCACCAGCACATGCCTGA
773 TTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * ** *
11717092 GCCCAGCATGTGCTGCCGTAACCCTCGGTCCAATCCGATCTTAGACTGGGAATTAACTCTGCATG
838 GCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC-GCATG
** * * *
11717157 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * * *
11717222 CGACCAGAGGGGTGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCTTCTGCATGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCAGGTCCCCTT-TGCATGCTACCGATCC
* ** *
11717287 TGCTACT-GCAACCCTCGGTACGATCCAATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCA
130 TGCTACTCGCAACCCTCGGT-CGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* * *
11717351 ACCGACGAAACGAGCGGACGGGCGGGCGGGCAGGCACTACACCGACCAGAGAGATGGGATGCACA
194 ACCGACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCA
* *
11717416 AGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
11717481 ATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGA
324 ATTTTTATGACTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
* * * *
11717546 CGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
11717611 TCGGAAGGAGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTA--TTGGATTGACATGCACAA
454 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG-TTGGCATGCACAA
* * *
11717674 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCACCATT
518 AAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
11717739 TCAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
11717804 AGTTCCAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCACAC
648 AGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
11717869 ATCATGTGCGCACACCCCCCCGG-CCCCCTGATCGT-CGGAACCCCAATACCGCCGGTCAGGTTC
713 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATC-TCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * *
11717932 TCCGGTGATGCTCC-AGTGAAGGTGCCTCGACAAAGAAAAATACGGAACCAGCACATGCCCGAGC
776 TCCGGCGATGCTCCGA-TGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * *
11717996 CCAG-ATGTGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTC
840 CCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
11718052 CGTATGCCTA
Statistics
Matches: 2343, Mismatches: 300, Indels: 94
0.86 0.11 0.03
Matches are distributed among these distances:
889 1 0.00
890 122 0.05
891 199 0.08
893 5 0.00
894 249 0.11
895 206 0.09
896 6 0.00
898 10 0.00
899 443 0.19
900 5 0.00
901 52 0.02
902 239 0.10
903 276 0.12
904 519 0.22
905 8 0.00
906 2 0.00
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCAGGTCCCCTTTGCATGCTACCGATCCT
GCTACTCGCAACCCTCGGTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
CGACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGACTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCCGATCTCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
CGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCGCATG
Found at i:11718787 original size:26 final size:26
Alignment explanation
Indices: 11718751--11718803 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11718741 TCGATCCGAT
11718751 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11718777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11718803 C
1 C
11718804 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11719790 original size:849 final size:851
Alignment explanation
Indices: 11718151--11724083 Score: 5338
Period size: 902 Copynumber: 6.7 Consensus size: 851
11718141 TCGAGAGGGT
** * *
11718151 GGTCGGTCAGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
1 GGTCGGTGGGTTTAGGTACAGCTTGATATTT-TGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
11718216 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTGGTTTTCTATTTTT
65 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * *
11718281 CACGATTTTTGAAACTTTTTACGGTTTGGGATTTTGTAAAATTTTTTCGAAAGGCGTTTTGGCCT
130 CACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
*
11718346 AAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCG
195 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCG
*
11718411 AAGTGTACAAGATTTTGTGACAATTT-AAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTAC
260 AAGTGTACAAGATTTTGTGACCATTTGAAAAAA-GTGTCCCCATTTCAGACACTTTAATGGCTAC
11718475 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
324 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
11718540 GGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCGCACCCCCC
389 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCGCACCCCCC
* * * **
11718605 CTGACCCCCTCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGTTGATGCTCCGACGAT
452 C-GGCCCCC-CGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGACGAT
* *
11718670 GGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
515 GGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCTACCCCAACC
* * * *
11718735 CTCGATTCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
579 CTCGGTTAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGT
* * * ** *
11718800 ATGCCTAAGTCAACCCA-TAAAAAAGAGTGCGGGCGCTCAGCCACCAGAGGGGCGGGATGCGCAA
643 ATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCGGCCAGAGGGGCGGGATGCACAA
* * * ** *
11718864 CCCGAGGATCGGTCAGGTCCCCCTCTGCGTGCTACTGATCCTGCTACCACAACCCTCAGTCCGG-
708 CCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCACAACCCTCAGTCTGGT
* *
11718928 TCTGATATTAGACTGGGAATGAAC-CCTGTAAGCCTAAGCCAACCAACAAAACGAATGGACGGG-
773 TC-GATCTTAGACTGGGAATGAACTCC-GTATGCCTAAGCCAACCAACAAAACGAATGGACGGGA
11718991 C-A-AAC-G-G-G-C-
836 CTACAACTGAGAGACG
* *
11719000 GGTCGGTGGGTTTAGGCACAGCTTGATATTTGTGTGTGCCAAAGCCATTTTTATGGCTTGTAAAT
1 GGTCGGTGGGTTTAGGTACAGCTTGATATTT-TGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * * * *
11719065 TCATATAGTGGTCCCTTAAGCCTTCGTGTGAAGTTTCGTGGCAAGATGACTTGTTTTCTATTTTT
65 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * *
11719130 CACGATTTTTGAAAGATTTCGCGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCC
130 CACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
* * * *
11719195 CAAACTTGGTAGACATGATCGTTTTATTTTTGTTGCCATGCACAAAAACATTCAGCTACAAAA-T
195 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTA-AAAACT
*
11719259 CGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
258 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
11719324 CTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
323 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
11719389 GGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACCCCCCC
388 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCC
* *
11719454 GGCCCCCCAGATCGTCGGAACCCCAATGCCGCCGTTCAGGTTCTCTGGCGATGCTCCGACGATGG
453 GGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGACGATGG
* *
11719519 TGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCCCAACCCT
517 TGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGC-CGAGCCCAGCATGTGCTACCCCAACCCT
* * * * * * * *
11719584 CGGTGTAGTCTGATCTTAGACCGAGAATGAACTTCGTATGCTTTGACTGTGAATGAACGCCATAT
581 CGGT-TAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTAT
* * * * * *
11719649 TCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGCGGCATGCATAAG
645 GCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC-GGCCAGAGGGGCGGGATGCACAAC
* * * * * * *
11719714 CCGGGGATCGGTTGGGTCCCCCTCTGCATGCTGCCAATCTTGCTGCCAGATCCCTCGGTCTGGTT
709 CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCACAACCCTCAGTCTGGTT
*** ** *
11719779 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGGAACGAGCGGGCGGGTGGG
774 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-----AAC-A--AAACGAATGGA
11719844 CGGGCACTACGTCAACTTGAGAGACGGGATGTGTAAGTCG
831 CGGG-ACTA---CAAC-T----GA---GA---G--A--CG
* * * * ** *
11719884 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTACGTGTCAATGCCATTTT
1 -GG-TC------------GGTGGGTTTAGGTACAGCTTGATA-TTTTGTGTGCCAATGCCATTTT
11719949 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
51 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * *
11720014 CATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTC-AGGATTTGTTAAAATTTTTTCG
116 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG-TTCGA-GATTTTTTAAAATTTTTTCG
* * *
11720078 AAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCAAAAAAAA
179 AAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-AAAAAAA
11720143 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
243 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
11720208 ACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTT
308 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
11720273 CTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCA
373 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
11720338 TGTGCACACACCCCCCAGCCCCCCCGATCGCCGGAACCTCAATGCCGCCCATCAGGTTCTCTGGC
438 TGTGCGCAC-CCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTGGC
* * * * *
11720403 GATGCTCCAACGATGGTGCCC-GGGGAAGAAAAATGTGGCGCCAGCAAATGCCTGAGCCCAGTAT
501 GATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCC-GAGCCCAGCAT
* * * *
11720467 GTGCTACCCCAACTCTCGGTCTGGTCCGATCTTAGACTGGGAATCAACTCCGTATGCTTAGACGG
565 GTGCTACCCCAACCCTCGGT-TAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
11720532 AGAATGAACTCCGTATGCGTAAGTGAACCCACGAAATGAGCATGCGGGCGCTCAGCCGGCTAGAG
629 AGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAG-CGGCCAGAG
* * * * * * *
11720597 GGGCGGGATGCACAATCCGGGGACCGGCCGGGTCCCCCTCTGTGTGCTGGCAATCCTACTACCTC
693 GGGCGGGATGCACAACCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCAC
* * * *
11720662 AACCCTCAGTCTGGTCCGATCTTGGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
758 AACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAA
** **
11720727 CGAGCGGGCGGGCGAGCGCGGGGGCACTACCCCGGCTAGAGAGACG
823 CGA------ATG-GA---C--GGG-ACTA---CAACT-GAGAGACG
* * **
11720773 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
1 GG-T---C--G--GTGG---G-T----T--TA----GG--T----ACAGCTTGATATTT-TGTGT
*
11720838 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACT-TGAAGTTT
37 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-TGTGAAGTTT
**
11720902 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
101 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTT
**
11720967 TAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAACTTGGTAGATTTGATCCTTGTATTTTTGTTG
166 TAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * *
11721031 GCATGCAAAAAACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTCACCACTTGAAAAAAG
230 GCATGCAAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
11721096 TGTCCCCATTTCAGACGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTA
294 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
11721161 AGGGGGTGTGAGTTCTCGAGGTTTTATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCA
359 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* *
11721226 CCCATCGCACATCTTGTGCGCACACCCCCCTGGCCCCCTCGATCGCCGGAACCCCAATGCCGTCG
424 CCCATCGCACATCATGTGCGCAC-CCCCCC-GGCCCCC-CGATCGCCGGAACCCCAATGCCGCCG
* * * * *
11721291 ATCAGG-TCTCCGGCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACAT
486 ATCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACAT
* * * **
11721355 GCCCGAGGCCAGCATGTGTTGCTGCAACCCTC-----G---G----T---C------T-AA-TCC
551 G-CCGAGCCCAGCATGTGCTACCCCAACCCTCGGTTAGTCCGATCTTAGACTGGGAATGAACTCC
* * * * * * *
11721397 G-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACTCACGAAATGAGCATGCGAGCGG
615 GTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGC
* * * * *
11721460 TCAGCCGGCTAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACC
680 TCAG-CGGCCAGAGGGGCGGGATGCACAACCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* * * * * *
11721525 GATCCTGCTACCGCAACCCTCCA-TTTGATCCGATCTAAGACTGGGAATGAACTCCGTATGCCTA
744 AATCCTGCTACCACAACCCT-CAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
** *
11721589 AGCCAACTGACAGAACGAGCGGGCAGACGGGCGAACGGGCACTATGCCGGCCAGAGAGACGGGAT
808 AGCCAACCAACA-AA--A-C--G-A-A--TG-G-ACGGG-ACTA-------C----A-AC----T
*
11721654 GCGCAAGCCGTTGATCGATGGG
844 --G--A------GA--GA--CG
* * * * * *** *
11721676 TGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTACATGCCAATGCCATTTTGATGGCTTGTAAA
1 -GGTCGGTGGGTTTAGGTACAGCTTGATATTT-TGTGTGCCAATGCCATTTTTATGGCTTGTAAA
* * *
11721741 TTCATACAATGGTCCCTTAAGCCTTCAGGT-AAGGTTTCATGGCAAGACAACTCGTTTTCCA-TT
64 TTCATACAATGGTCCCTTAAGCCTTCATGTGAA-GTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
11721804 TTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGT
128 TTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
*** * * * * *
11721869 ATTAAACTTGGTAGACGTGATACTTGTATTTTTATTGGCTTGCACAAAAAAAATCAGCTAAAAAC
193 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAAC
* * * ** **
11721934 TCAAAGTGTTCAATATTTTGTGACCATTTGAAAAAAGTGTCTGCATTTTTGACACTTTAATGGCT
257 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
11721999 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTTATG
322 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
11722064 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGACACCCC
387 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-G-CACCCC
* * * **
11722129 CCCGGCCCCCCCGATCGTCGAAACCCTAATGCTACCGATCAGGTTCT-T-----TG----G-CGA
450 CCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGACGA
* * ** * * * *
11722183 TGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACTTGCCCAAGCCCAGCATGTGCTGCCGCAAC
514 TGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCTACCCCAAC
* * * * * *
11722248 CCTTGATCTGGTCTGATCTTAGACTGGGAATGAACAT-CGTATGCTTAGACTGGGAATGAACTCT
578 CCTCGGT-TAGTCCGATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGACTGAGAATGAACTCC
* * * * * *
11722312 GTATGGCTAAGGCAATCCATGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCA
641 GTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCA
** * ** * * ** ** * *
11722377 CAAGTCGGGAATCGACCGGGTCCCCGTCTACGTGCTGCTGATCCTGCTACTGCAACCCTCGGTTT
705 CAACCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCACAACCCTCAGTCT
* * * * * **
11722442 GGTCCAATCTTATACTGGGAATGAACTCCATATGCCTAAGCCAACCAACGACACAGCGGGCGGGT
770 GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAC-A-A-A----ACGAAT
*
11722507 GGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGG
828 ----GGACGGG-ACT------A-C----A-AC----T--G--AG--A--GA-C------G
* * * *
11722567 TGGTAGGTGGGTTTAGGCACATCTTCATATTTT-TGCATGCCAATGCCATTTTTATGGCTTGTAA
1 -GGTCGGTGGGTTTAGGTACAGCTTGATATTTTGTG--TGCCAATGCCATTTTTATGGCTTGTAA
* *
11722631 ATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
63 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
** * * * * *
11722696 TTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGC
128 TTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
* * * *
11722761 CCTAAACTTGGTAGACGTGACCCCTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAC
193 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAAC
* *
11722826 TCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCA
257 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
11722891 ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATG
322 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * * * *
11722956 GGGGATAGAGGGCCAATATAAGGGCCAAGTACCAACCCCCATTGCACAACATGTGCGCACACGCC
387 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-C-CC
* * * * * * **
11723021 CCCGACCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGA
450 CCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGACGA
* * **
11723086 TGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAC
514 TGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCTACCCCAAC
* * * * * * * *
11723151 CCTCGATCCAATCCGATCTTAGACTAGGAATGAACTTCGTATGCTTATACTGGGAATGAACTCCA
578 CCTCGGT-TAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCG
* * * * * * * *
11723216 TATGGCTAAGTTAATCCATGAAATGAGCGTACGAGCGCTCAGCCGGCCGGAGGGGCGGGATGCAC
642 TATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCAC
* * ** **
11723281 AAGCCGGGGATCGG-CATGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTTGGTCT
706 AACCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCACAACCCTCAGTCT
* * * *
11723345 GGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAGTGGGCGGGT
770 GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAA--CAA-A----------
* * *
11723410 GGGCTAGCGGGCACTAGGTCGGCCAGAGAGACGGTATGCGCAAGCCGTGGATCGATAGGG
822 -----A-C--G-A--A--T-GGAC-G-G-GAC--TA----CAA--C-T-GA--GAGA-CG
* * ** * *
11723470 TGGTAGGTGGGTTTAGGCACATTTTCATATTTCT-TAATGCCAATGCCATTTTTATGGCTTGT-A
1 -GGTCGGTGGGTTTAGGTACAGCTTGATATTT-TGT-GTGCCAATGCCATTTTTATGGCTTGTAA
* * *
11723533 ATTCATACAATGGTCCCTTAAGCCCTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
63 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
11723598 TTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGATGGTGTTTCGGC
128 TTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
* * * *
11723663 CCCAAACCTGGTAGACGTGATCCCTGTACTTTTT-TTGGCATGCACAAAAAAATTCAGCCAAAAA
193 CCCAAACTTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAA
*
11723727 CTCGAAGTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
256 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
11723792 TACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGAT
321 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
11723857 GAGGGATAGGGGGCCAATATAAGTGCCAAGTGCCAGCACCAATCGCACATCATGTGTGCACACCC
386 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCC
* * * * *
11723922 CCCAGCCCCTCCGATCGTCGGAACACCAATGCC-TCGGTCAGGTTCTC---C---G----G-CGA
450 CCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGACGA
* * ** * * * *
11723975 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCTAGCATGTGCTGCCGCAAC
514 TGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCTACCCCAAC
* * * * *
11724040 CCTTGGTCTGGTCCGATCATAGATTGGGAATGAACTTCGTATGC
578 CCTCGGT-TAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
11724084 CTAAGTCAAC
Statistics
Matches: 4288, Mismatches: 530, Indels: 492
0.81 0.10 0.09
Matches are distributed among these distances:
846 2 0.00
847 180 0.04
848 32 0.01
849 312 0.07
850 189 0.04
851 10 0.00
854 3 0.00
855 1 0.00
857 9 0.00
859 1 0.00
860 1 0.00
864 3 0.00
865 62 0.01
866 1 0.00
870 3 0.00
871 1 0.00
874 2 0.00
875 310 0.07
876 118 0.03
877 184 0.04
878 8 0.00
879 5 0.00
880 3 0.00
881 11 0.00
882 3 0.00
883 6 0.00
884 2 0.00
885 2 0.00
886 10 0.00
887 3 0.00
888 7 0.00
889 99 0.02
890 39 0.01
891 287 0.07
892 331 0.08
893 7 0.00
894 5 0.00
895 1 0.00
896 7 0.00
897 5 0.00
898 139 0.03
899 521 0.12
900 81 0.02
901 43 0.01
902 659 0.15
903 547 0.13
904 8 0.00
909 1 0.00
911 2 0.00
913 2 0.00
914 2 0.00
915 2 0.00
916 1 0.00
917 3 0.00
919 4 0.00
920 2 0.00
921 3 0.00
922 2 0.00
923 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (851 bp):
GGTCGGTGGGTTTAGGTACAGCTTGATATTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
ACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGC
CCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGACGATGGTGCC
CTGGCGAAGAAAAATGTGGCACCAGCACATGCCGAGCCCAGCATGTGCTACCCCAACCCTCGGTT
AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCGGCCAGAGGGGCGGGATGCACAACCCGGGGA
TCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCACAACCCTCAGTCTGGTTCGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAATGGACGGGACTACAACTGA
GAGACG
Found at i:11720526 original size:26 final size:26
Alignment explanation
Indices: 11720497--11720549 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11720487 CTGGTCCGAT
11720497 CTTAGACTGG-GAATCAACTCCGTATG
1 CTTAGAC-GGAGAATCAACTCCGTATG
*
11720523 CTTAGACGGAGAATGAACTCCGTATG
1 CTTAGACGGAGAATCAACTCCGTATG
11720549 C
1 C
11720550 GTAAGTGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACGGAGAATCAACTCCGTATG
Found at i:11721212 original size:902 final size:900
Alignment explanation
Indices: 11719004--11730491 Score: 7955
Period size: 887 Copynumber: 12.9 Consensus size: 900
11718994 ACGGGCGGTC
* * * ** *
11719004 GGTGGGTTTAGGCACAGCTTGATATTTGTGTGTGCCAAAGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * ** * * *
11719069 ATAGTGGTCCCTTAAGCCTTCGTGTGAAGTTTCGTGGCAAGATGACTTGTTTTCTATTTTTCACG
66 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * *
11719134 ATTTTTGAAAGATTTCGCGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAA
131 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAA
* * * * *
11719199 CTTGGTAGACATGATCGTTTTATTTTTGTTGCCATGCACAAAAACATTCAGCTACAAAA-TCGAA
195 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA-AAAACTCGAA
*
11719263 GTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
259 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
11719328 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
324 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
11719393 TTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAC-CCCCCCGGC
389 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * *
11719457 CCCCCAGATCGTCGGAACCCCAATGCCGCCGTTCAGGTTCTCTGGCGATGCTCCGACGATGGTGC
454 CCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
* * *
11719522 CCTGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCCCAACCCTCGG
519 CC-GGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGA
* * * * * * * * * * *
11719587 TGTAGTCTGATCTTAGACCGAGAATGAACTTCGTATGCTTTGACTGTGAATGAACGCCATATTCC
583 TCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCG
* * * * *
11719652 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGCGGCATGCATAAGCCG
648 TAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCG
** * * * * * * *
11719717 GGGATCGGTTGGGTCCCCCTCTGCATGCTGCCAATCTTGCTGCCAGATCCCTCGGTCTGGTTCGA
713 GGGATCGGCCGGGTCCCCCTCTGCGTGCTG-CGATCCTGCTACCACAACCCTCGGTCTGGTCCGA
* *
11719782 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGGAACGAGCGGGCGGGT--G-G-
777 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGA
* ** ** * * *
11719843 GCGGGCACTACGTCAACTTGAGAGACGGGATGTGTAAGTCGTGGATCGATAGGGTGGTA
842 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
11719902 GGTGGGTTTAGGCACATCTTCATACTTCTACGTGTCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
11719967 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATG
66 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
11720032 ATTTTTGAAACTTTTTGCGGTTTC-AGGATTTGTTAAAATTTTTTCGAAAGGAGTTTTGGACCCA
131 ATTTTTGAAACTTTTTGCGG-TTCGA-GATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCA
* *
11720096 AACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGA
193 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
11720161 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTG
258 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
11720226 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGG
323 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
11720291 ATAGGGGACCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCAG
388 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * * *
11720356 CCCCCCCGATCGCCGGAACCTCAATGCCGCCCATCAGGTTCTCTGGCGATGCTCCAACGATGGTG
453 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTG
* * * * * * * * *
11720421 CCCGGGGAAGAAAAATGTGGCGCCAGCAAATGCCTGAGCCCAGTATGTGCTACCCCAACTCTCGG
518 CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGA
* *
11720486 TCTGGTCCGATCTTAGACTGGGAATCAACTCCGTATGCTTAGAC-GGAGAATGAACTCCGTATGC
583 TCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG-GAATGAACTCCGTATGC
* * * *
11720550 GTAAGTGAACCCACGAAATGAGCATGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAATCC
647 GTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
* * * * * *
11720615 GGGGACCGGCCGGGTCCCCCTCTGTGTGCTGGCAATCCTACTACCTCAACCCTCAGTCTGGTCCG
712 GGGGATCGGCCGGGTCCCCCTCTGCGTGCT-GCGATCCTGCTACCACAACCCTCGGTCTGGTCCG
* * * * *
11720680 ATCTTGGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGAGCG
776 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCG
* * * *
11720745 CGGGGGCACTACCCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
841 AGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
11720805 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* **
11720870 ACAATGGTCCTTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
66 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
**
11720935 ATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
131 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAA
** *
11721000 CTTGGTAGATTTGATCCTTGTATTTTTGTTGGCATGCA-AAAAACAATTCAGCTAAAAACTTGAA
195 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAA
* * *
11721064 GTGTACAAGATTTTGTCACCACTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGG
259 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
11721129 CAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTATGAGGGA
324 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
11721194 TAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCCTGG
389 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GG
* * * *
11721259 CCCCCTCGATCGCCGGAACCCCAATGCCGTCGATCAGG-TCTCCGGCGATGCTTCGACGATGGTG
453 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTG
** * * * * *
11721323 CCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGGCCAGCATGTGTTGCTGCAA-CC-C-
518 -CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
*
11721385 -TC--G---G----T---C------T-AA-TCCG-AT-CTTAGACTGGGAATGAACTTCGTATGC
582 ATCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * *
11721427 CTAAGTCAACTCACGAAATGAGCATGCGAGCGGTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCT
647 GTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
* * * ** * *
11721492 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCCATTTGATCCG
712 GGGGATCGGCCGGGTCCCCCTCTGCGTGCT-GCGATCCTGCTACCACAACCCTCGGTCTGGTCCG
* * * **
11721557 ATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC-AGAACGAGCGGGCAGACGGGC
776 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-AACGAGCGGGCGGGTGGGC
* * *
11721621 GAACGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGAT-GGGTGGTA
840 GAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
11721681 GGTGGGTTTAGGCACATCTTCATGTTTCTACATGCCAATGCCATTTTGATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
11721746 ACAATGGTCCCTTAAGCCTTCAGGT-AAGGTTTCATGGCAAGACAACTCGTTTTCCA-TTTTCAT
66 ACAATGGTCCCTTAAGCCTTCAAGTGAA-GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * ****
11721809 GATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTATTAA
130 GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAA
* * * * *
11721874 ACTTGGTAGACGTGATACTTGTATTTTTATTGGCTTGCACAAAAAAAATCAGCTAAAAACTCAAA
194 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * ** **
11721939 GTGTTCAATATTTTGTGACCATTTGAAAAAAGTGTCTGCATTTTTGACACTTTAATGGCTACTGG
259 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
11722004 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTTATGAGGGA
324 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
11722069 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGACACCCCCCCGG
389 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
* * ** *
11722134 CCCCCCCGATCGTCGAAACCCTAATGCTACCGATCAGGTTCT-------T--T--GGCGATGGTG
453 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTG
* * * * *
11722188 CCCCGGTGAAGAAAAATGCAGCACCAGCACTTGCCCAAGCCCAGCATGTGCTGCCGCAACCCTTG
518 -CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
* * *
11722253 ATCTGGTCTGATCTTAGACTGGGAATGAACAT-CGTATGCTTAGACTGGGAATGAACTCTGTATG
582 ATCTAGTCCGATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
11722317 -GCTAAGGCAATCCATGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAG
646 CG-TAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG
* * * * * ** *
11722381 TCGGGAATCGACCGGGTCCCCGTCTACGTGCTGCTGATCCTGCTACTGCAACCCTCGGTTTGGTC
710 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC-GATCCTGCTACCACAACCCTCGGTCTGGTC
* * * * *
11722446 CAATCTTATACTGGGAATGAACTCCATATGCCTAAGCCAACCAACGACAC-AGCGGGCGGGTGGG
774 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGG
* * * *
11722510 CGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTA
839 CGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
11722572 GGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
11722637 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
66 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * * * * *
11722702 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCTAAA
131 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAA
* * *
11722767 CTTGGTAGACGTGACCCCTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAG
195 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
11722832 TGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCAACTGGC
260 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
11722897 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGGGGGAT
325 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * * * *
11722962 AGAGGGCCAATATAAGGGCCAAGTACCAACCCCCATTGCACAACATGTGCGCACACGCCCCCGAC
390 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGC
* * * **
11723027 CCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGC
454 CCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTG-
* *
11723092 CCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGA
518 CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGA
* * * * * *
11723157 TCCAATCCGATCTTAGACTAGGAATGAACTTCGTATGCTTATACTGGGAATGAACTCCATATG-G
583 TCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCG
* * * * * *
11723221 CTAAGTTAATCCATGAAATGAGCGTACGAGCGCTCAGCCGGCCGGAGGGGCGGGATGCACAAGCC
648 -TAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
** * *
11723286 GGGGATCGGCATGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTTGGTCTGGTCCA
712 GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC-GATCCTGCTACCACAACCCTCGGTCTGGTCCG
* * * * *
11723351 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAAC-AGTGGGCGGGTGGGCT
776 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCG
* * *
11723415 AGCGGGCACTAGGTCGGCCAGAGAGACGGTATGCGCAAGCCGTGGATCGATAGGGTGGTA
841 AGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* **
11723475 GGTGGGTTTAGGCACATTTTCATATTTCTTAATGCCAATGCCATTTTTATGGCTTGT-AATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
11723539 ACAATGGTCCCTTAAGCCCTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
66 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
11723604 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGATGGTGTTTCGGCCCCAAA
131 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAA
* * *
11723669 CCTGGTAGACGTGATCCCTGTACTTTTT-TTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAA
195 CTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
11723733 GTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
259 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
11723798 CAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGA
324 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * *
11723863 TAGGGGGCCAATATAAGTGCCAAGTGCCAGCACCAATCGCACATCATGTGTGCACACCCCCCAGC
389 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * *
11723928 CCCTCCGATCGTCGGAACACCAATGCC-TCGGTCAGGTTCTCCGGCGA---T--G--G-T-G-CC
454 CCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
** * * * *
11723982 CCGACGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCTAGCATGTGCTGCCGCAA-CC-C--T
519 CCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGAT
* * * *
11724043 -T-G---G----T---CT--G---G---TCCG-AT-CATAGATTGGGAATGAACTTCGTATGCCT
584 CTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCGT
* * * * * *
11724086 AAGTCAACGCATGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGAGGCGGGATGCGCAAGTCGG
649 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGG
* * * * * ** *
11724151 GGATCGGTCGGGTCCCCCTCTACGTGCTGTCGCAACCCTCGGTCAGTCCGATCTTAGACT-GGCA
714 GGATCGGCCGGGTCCCCCTCTGCGTGCTG-CG--ATCCT-GCT-A--CC-A-C-AACCCTCGG-T
* * ** * *
11724215 CTGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACTA---
768 CTG--GTCC-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * *** * * * *
11724277 -GC--GT--GTG-G-GTGCTC-A-GCCGGCCAGAGGGGTAGGATGCGCAAGCTGCGGATCGGTCG
829 GGCGGGTGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
** *
11724333 GGTCCCCCTCT
894 GGT---GGT-A
* * * * * *
11724344 GCGTGCTACCGATCCTGTTGCCGCA-ACCCTCAGTCTGATCTAATCTTAG-ACTGGCAATG-AAC
1 G-GTG-----GGT--T-TAG--GCACATCTTCA---T-AT-T--TC-T-GCA-TGCCAATGCCA-
*** * * * * * * ** * * * ** * *
11724406 TCCGTATGCCTAAGGCAACAGATGAAACGAGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACG
44 TTTTTATGGCT--TGTAA-A-TTCATAC-AATGGTC---C---C-TTAAGCC-TTCA-AGTGAAG
** * * ** * * * * * * *
11724471 --AGATGCGCAAGCCATGGA-TCGGTAGGCTGGTAGGTTTGTTTAGGCACATCTTCATA-TTTCT
95 TTTCATG-GCAAG--A-CGACTC-GT---TTTCTA--TTT-TTCACG-A-TTTTTGAAACTTTTT
* * * ** * * * * ** * * * * * *
11724532 GC-ATGCCA-A-----TGCAA-TTTTT--ATGG-CTTGTAGATCCATACAATGGT--CCTTTAAG
147 GCGGTTCGAGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAAC-TTGGTAGAC-GTGAT
** ** * *** *** * ** ****
11724584 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
210 CCTT---GT-ATTTTTGTTGGCATG-C-A--C----AAAAAAATTCA-G---CTAAAAACTCGAA
* * * * *** * ** *
11724649 GTGGTTCAGGATTTTTTAAATTTTTTTTGGAAGGAGTTTCGGCCCCAAACTTGGT-AGACGTGAT
259 GT-GTACAAGATTTTGT-GA--CCATTTGAAAAAAG--T-GTCCCC--A-TT--TCAGAC---A-
*** ** * * * * * ****
11724713 CCTTGT-ATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAA-G-TGTATAAGATTT
308 -CTT-TAATGGCTACTGGCA-G--C--AAAC---CTG-TAAAATCTCAAATGCTCTTTAAGGGGG
* *** ** * * * *
11724775 TGTGA---C-C-A--TTTGA-AAAAAATA---CCCCCATTTCA-GACACTTGAATGGCTACTGGC
362 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC-C---AA--G-TAC---C
* * * * * ***** ****** * ******
11724828 AGCAAACC-T-GTAAAATC-TCAGT-TG--CTCTTTAAGG-GGGTGTGAGTTGTC-GAGGTTTGA
417 AGC-ACCCATCG-CACATCAT--GTGCGCACACCCCCCGGCCCCCCCGA-TCGTCGGAACCCCAA
* * * ** ***** * ** * ** * * * ** *
11724885 TG-AG-GGATAAGGGGC-CAATATAAGGGCCAAGTACCA--GCACCC-ATCACA-CATCATGTGC
477 TGCCGCCGATCAGGTTCTCCGGCGATGCTCC--G-ACGATGGTGCCCGGTGA-AGAAAAATGCG-
** ** ** * ** *
11724943 GCA-CA-C-CACCCCCG-GCCCCCCGATCGTCGAAACCCCAATGCTGTCGATC-AG---GTTCTT
537 GCACCAGCACATGCCCGAGCCCAGC-AT-GT-GCTACCGCAA--CCCTCGATCTAGTCCGATCTT
* * * * * * * * * *
11725000 TGAC---G-ATG--CTCCGGTGATG-GT-GCCCTGGCAAAGAGAAATGCAGCA-CCAGCACATGC
597 AGACTGGGAATGAACTCC-GT-ATGCTTAG-ACTGG-GAA-TGAACT-CCGTATGC-GTA-A-G-
* * * * ** * * * ** *
11725056 CCGAGCCCA-G-CATGTGC-TGCCGTAACCCTCGATCCGATCC-GATCTTAGACTGGGAATG-A-
652 TC-AACCCACGAAATGAGCGTG-CG-GGCGCTC-AGCCG-GCCAGA---GGGGC-GGG-ATGCAC
** * ** * * * * * * * * * ** * *
11725115 ACTCCGTATGCTTAGACAGGGAATGAACTCCTTATGCCTAAG-T-CAATCCACGGAACGAGCGTA
707 AAGCCG--GGGATCGGCCGGG--T---CCCCCTCTGCGT--GCTGCGATCC-TGCTACCA-C-AA
* * * * * * * * * * *
11725178 CGGGCGCTTAGCTGACTAGAAGGGCGGCATC-CACAAGCCGGGGATCGACCGGGTCCCCCTCTGC
760 C---C-C-T--CGGTCT----GGTCCG-ATCTTA-GA-CTGGGAAT-GAAC---T--CCGTATGC
* ** * * ** * * * * * * **
11725242 GTGCTGTCAATCCTACTGCCA-TAAC---C-GTTGGTC---CGGTCCAATCTTA-GACTGGGAAT
805 CT-AAGCCAA-CCGAC-GAAACGAGCGGGCGGGTGGGCGAGCGG-GC-A-C-TACG-CCGGCCA-
** ** * ** **
11725298 GA-ACTCGATATGC-CTAAGCATAC-TGAAGAAAT-GAGCAGGCAGCCA
861 GAGAGACGGGATGCGC-AAGC---CGTG--G--ATCGA-TAGGGTGGTA
* ** * ** * *** * * ***
11725343 GGCGGG--CGGGCACTGCACCGGCCAGAGCGACGGGATGCGCAA-GCCGTGGATCGATAGGGTGG
1 GGTGGGTTTAGGCA---CATC-TTCATA-TTTCTGCATGC-CAATGCC----ATTTTTA---TGG
* *** * * * *
11725405 CAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC--AATGCCATTTTTATGGCTTGTAAAT
53 C---T---TGTA---A-A--TTCATA-CAATG-GTCCCTTAA-GCC---TTCA-AG--TG-AAGT
* * * *
11725468 TCATACAATGGTCCCTTAAGCCTTCACACGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTT
96 T--T-C-ATGG---C--AAGAC--GACTCG---TTT--T-------CTA-T--TTTTC-A-----
* * * *
11725533 CATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTTGGATGGATTTTTGGCC
129 C--GATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCC
* * * * * *
11725597 GCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCGTGCATAAAACAATTCAGCAAAAAACT
190 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
11725662 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTTAGACACTTTAATGGCT
255 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCT
* ** *
11725727 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGAATGAGTTCTCAAGGTTTGATG
319 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
**
11725792 AGGGATAGGGGGCCAATATAAGGGCCAAGTAATAGCACCCATCGCACATCATGTGCGCACACTCC
384 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA---C
* *
11725857 ACCCCCCTCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CG--G-T-
444 A-CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTC
** * *
11725914 ----GATGGTGCCCCGACGAAGAAAAATGC-G-----G--CA--CCCGAGCCTAGCATGTGCTGC
507 CGACGATGGTG-CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* * *
11725965 CGTAA--C-C---CT--T--GATC-----C--GG--T---CT--G-AT-CATAGATTGGGAATGA
571 CGCAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * *
11726004 ACTTCGTATGCCTAAGTCAACGCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAAAGAGGCGGG
636 ACTCCGTATGCGTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * ** * * ** *
11726069 ATGCACAAGTCAGGGATCGATCGGGTCCCCCTCTGCATGCTCTCGATCCTGCCGCCGCAACCCTC
701 ATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT-GCGATCCTGCTACCACAACCCTC
*
11726134 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
765 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
*
11726199 GC--GT----GA--GGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGG
830 GCGGGTGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
11726256 GTGGTA
895 GTGGTA
* * * * *
11726262 GGTGGGTTTTGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAGGGCTTGTAAATTCCT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
11726327 ACAATGGTCCCTTAAGCCTTGATGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCATG
66 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
11726392 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCAGAAGGAATTTTGGCCCCAAA
131 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAA
**
11726457 CTTGGTAGAAATGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
195 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
11726521 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGC
260 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * * *
11726586 AGCAAACCTATAAAATCGCAAATACACTTTAA-GGGGTGTGAGTTCTCGAGGTTCGATGAGGGAT
325 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
11726650 AGGGGGCCAATATAGGGGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACA--------CC
390 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * * * *
11726707 CCCCCGATCGTCGTAACCCTAATGTCGCTGGTCAGTTTCT-C--CG--G----G-CGATGGTGCC
455 CCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * * *
11726762 ACGGCGAAGAAAAATACGGCACCAGCACATGCCCAAGCCAAGCATGTGCT---G-----C-C-A-
520 -CGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGAT
* * * * * *
11726816 C-A-ACC---CTTAGTCT-GG--T---CT--G-A-ACTTAGACTAGAAATGAACTCCGTATGCTT
584 CTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCGT
* * * * * * * *
11726866 AAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCTGACTAGAGGGGCGGGATGCGCTAGCCGA
649 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGG
* * * * * ** * * *
11726931 GGATCGGACAGGTCCCCTTGTGCGTGCTGCCGAT-CTGCTGCTGCAACCCTCGGTTTGATCTGAT
714 GGATCGGCCGGGTCCCCCTCTGCGTGCTG-CGATCCTGCTACCACAACCCTCGGTCTGGTCCGAT
* *
11726995 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGAGTGGGC------G-GA-
778 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGAG
* * * *
11727052 CGGGCACTACGCTGGCCAGAGAGATGGGATGCGCAAGTCGTGGATTGATAGGGTGGTA
843 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
11727110 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
11727175 AC----G-------A--C-TC--GT----TTTC-T---------A-T--TTTTC-A----T---G
66 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * *
11727199 ATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAAGCGTTTTGGCCCTAAA
131 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAA
* * *
11727264 CTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAG
195 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
11727329 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-GAACACTTTAATGGCTCCTGG
260 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGG
* * *
11727393 CAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTAAGTTCTTGAGGTTTGATGAGGGA
324 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
11727458 TAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTCATACCCCCCAG-
389 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * *
11727522 -CCCCCGATTGTCGGAAACCCAAT-CTCGTCGGTCAGG-T-T----C--T-CT--GACGATGGTG
454 CCCCCCGATCGTCGGAACCCCAATGC-CGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTG
** * * * * *
11727574 CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGGATGTGCTGCCACAA-CC-C-
518 -CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
*
11727636 -TC--G---G-TC-----C--GG--T---CT--G-AT-CTTAGACTAGGAATGAACTCCGTATGC
582 ATCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
11727678 CTGAA-TCAACCCACAAAATGAGCGT-C-TG-G----G-CGGCCAGAGGGGCGGGATACGCAATC
647 GT-AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGC
* ** * * ** *
11727734 TGGGGATCGATCGGGTCCCCCTTTGCGTGCTGCTGA-CCTGCTGCCGTAACCCTCGGTCTGGTCT
711 CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC-GATCCTGCTACCACAACCCTCGGTCTGGTCC
* * *
11727798 GATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCGACCAACGAAACGAGCGGGC------G-
775 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGC
** * * * **
11727856 G-GCGGGCACTACATCGACCAGAGAGACGGGATGCGAAAGCTGTGGATCGATAAAGTGGTA
840 GAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * **
11727916 AGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
11727981 ACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTCCTATTTTTTACG
66 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * ** * * *
11728046 ATTTTCGAGACTTTTTATGGGTCGAGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAAA
131 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCCCCAAA
* *
11728111 CTTGGTGGACGTGATCCTTATATTGTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
195 CTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
11728175 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
259 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
** * *
11728240 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTCGTTGTGAGTTCTCGAGGTTTGATGTGGGA
324 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
** *
11728305 TAGGGGGAAAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
389 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* ** * * * * * * *
11728370 CCCCTCGATCACCGGAAGCCCAAAGCTGTCGGTCAGGTTCTCTGGCGA---T-----GAT-G-CC
454 CCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
** * * * * *
11728425 CCGACGAAGAAAAATGCAGCACCAGTACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCTGT
519 CCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC-GA
* * * *
11728490 TC-GGTCCGATCTTAGACT-GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCC
583 TCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCG
* * ** * * * *
11728553 TAAGCCAACCCACGGAACAAGCGTGCGGACGCTCAGCCGGCCAGAGGGGCGGGGTGCGCAAGTCG
648 TAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCG
* * * * * * * * * * *
11728618 GGTATCGACTGGGTCCCCCTCTGCGTGCTGTCAATCTTGCTGCCGCAACACTCTGTCTGATCTGA
713 GGGATCGGCCGGGTCCCCCTCTGCGTGCTG-CGATCCTGCTACCACAACCCTCGGTCTGGTCCGA
* ** * *
11728683 TCTTAGACTGGGAATGAACTCCGTATGCCCAAGCTGACTGACGAAACGA----GCGGGTGGGCGG
777 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGA
* * * *
11728744 GCGGGCACTACGTCGGCCAAAGAGACGGGATGCTCAAGCCGTGGATTGATAGGGTGGTA
842 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
11728803 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAC
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
11728868 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTTGTTTTCTATTTTTCACA
66 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
11728933 ATTTTTGAAACTTTTTACGGATCGAGATTTTTGAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAA
131 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAA
* * * *
11728998 CATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAG
195 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
11729063 TATACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGAGACTTTAATGGCTACTGGC
260 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
11729128 AGGAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
325 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
11729193 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTGCAC-CCCCCTCG
390 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC--GCACACCCCC-CG
* * *
11729257 GCCCCCCCGATCGTCGTAACCCCAATGCCACCGGTCAGG-T-T-------T--TCCGACGAT-GT
452 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGT
** * * *
11729310 -TTCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTG
517 GCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
* ** * *
11729374 TTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGC
582 ATCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* ** * * * * ** **
11729439 CTAAGTCAACCCATAAAACGACCGTGCGAGCGCTCAGCCGGCCAGAAGGGTAGGATGCGTAAGCC
647 GTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
* ** * * * * * *
11729504 GGGGATCGGTCGGGTCAACCTCTGCGTGCTACCGATCCTACTACCATAACCCTCGATTTGGTTCG
712 GGGGATCGGCCGGGTCCCCCTCTGCGTGCT-GCGATCCTGCTACCACAACCCTCGGTCTGGTCCG
* * * * * * * *
11729569 GTCTTAAACTAGGAAAGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCAGGCAGGTGGGCG
776 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCG
*
11729634 A----GCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
841 AGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
11729690 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
11729755 ACAATGGTCCCTTATGCCTTCACGAGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
66 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* ** * * * * *
11729820 ATTTTTGAAACATTTTGTAGTTCAAGATTTTTTACAATTTTTTTGGATGGTGTTTTGGCCCCAAA
131 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTA-AAATTTTTTCGAAGGAGTTTTGGCCCCAAA
* **
11729885 CTTGCTAGACGTGATCCTTGTATTTTT-TTCGGCATGCATGAAAAAATTCAGCTAAAAACTCGAA
195 CTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
11729949 GTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTTCTGG
259 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
11730014 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
324 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
11730079 TAGAGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCCCGA
389 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
* * * **
11730144 CCCCACCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCAAACGATGGTG
453 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTG
* ** * * * *
11730209 CCCGGACGAAGAAAAATATGGCACCAGCACATTCCCGAGCTCAACATGTGCTGCCGCAACCCTCG
518 CCCGG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
* * *
11730274 GT-TCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAAGGAACTCCGTATG
582 ATCT-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
11730338 CCTAAGTCAACCCACGAAACGAGCGTACGGGCG---A---GTCCAGAGGGGCAGGATGCGCAAGC
646 CGTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGC
** * * * ** **
11730397 CGGGGATCGATCGAGTCCCCCTCTGTGTGCTGTCGATCCTACTGTCGTAACCCTCGGT-TCGGTC
711 CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG-CGATCCTGCTACCACAACCCTCGGTCT-GGTC
*
11730461 TGATCTTAGACTGGGAATGAACTCCGTATGC
774 CGATCTTAGACTGGGAATGAACTCCGTATGC
11730492 TTAGACTGGG
Statistics
Matches: 8408, Mismatches: 1506, Indels: 1356
0.75 0.13 0.12
Matches are distributed among these distances:
805 1 0.00
806 235 0.03
807 83 0.01
808 123 0.01
809 79 0.01
810 1 0.00
811 1 0.00
812 2 0.00
813 3 0.00
814 107 0.01
815 37 0.00
817 2 0.00
818 1 0.00
819 1 0.00
820 3 0.00
821 3 0.00
822 2 0.00
826 4 0.00
827 2 0.00
828 4 0.00
832 2 0.00
834 1 0.00
835 1 0.00
836 1 0.00
837 2 0.00
838 41 0.00
839 25 0.00
840 2 0.00
843 3 0.00
844 3 0.00
845 1 0.00
846 1 0.00
847 288 0.03
848 206 0.02
849 206 0.02
850 6 0.00
851 3 0.00
852 78 0.01
853 53 0.01
854 78 0.01
855 79 0.01
858 1 0.00
859 2 0.00
862 1 0.00
863 108 0.01
864 4 0.00
865 103 0.01
866 7 0.00
867 7 0.00
868 3 0.00
869 7 0.00
870 6 0.00
871 7 0.00
872 6 0.00
873 9 0.00
874 47 0.01
875 327 0.04
876 175 0.02
877 236 0.03
878 11 0.00
879 10 0.00
880 9 0.00
881 4 0.00
882 52 0.01
883 72 0.01
884 1 0.00
885 14 0.00
886 124 0.01
887 1073 0.13
888 33 0.00
889 92 0.01
890 65 0.01
891 297 0.04
892 334 0.04
893 10 0.00
894 101 0.01
895 6 0.00
896 5 0.00
897 18 0.00
898 139 0.02
899 536 0.06
900 237 0.03
901 54 0.01
902 655 0.08
903 688 0.08
904 15 0.00
905 8 0.00
906 2 0.00
908 4 0.00
909 3 0.00
910 4 0.00
911 6 0.00
912 16 0.00
913 6 0.00
915 3 0.00
916 14 0.00
917 13 0.00
918 4 0.00
919 12 0.00
920 10 0.00
921 5 0.00
922 2 0.00
923 7 0.00
924 2 0.00
925 18 0.00
926 5 0.00
927 6 0.00
928 9 0.00
929 4 0.00
930 7 0.00
931 10 0.00
932 25 0.00
933 10 0.00
934 12 0.00
935 9 0.00
936 3 0.00
937 18 0.00
938 10 0.00
939 20 0.00
940 16 0.00
941 12 0.00
942 15 0.00
943 7 0.00
944 4 0.00
946 2 0.00
947 1 0.00
948 2 0.00
949 2 0.00
951 3 0.00
952 2 0.00
953 11 0.00
954 5 0.00
955 1 0.00
956 2 0.00
957 1 0.00
958 13 0.00
959 5 0.00
960 6 0.00
961 6 0.00
962 4 0.00
963 13 0.00
964 9 0.00
965 11 0.00
966 11 0.00
967 9 0.00
968 14 0.00
969 4 0.00
970 6 0.00
971 11 0.00
972 5 0.00
973 9 0.00
974 1 0.00
975 9 0.00
976 3 0.00
977 2 0.00
978 11 0.00
979 4 0.00
980 10 0.00
981 7 0.00
982 1 0.00
983 4 0.00
984 6 0.00
985 1 0.00
986 10 0.00
987 9 0.00
988 8 0.00
989 8 0.00
990 10 0.00
991 12 0.00
992 5 0.00
993 17 0.00
994 5 0.00
995 10 0.00
996 10 0.00
997 30 0.00
998 15 0.00
999 11 0.00
1000 4 0.00
1001 5 0.00
1002 20 0.00
1003 10 0.00
1004 4 0.00
1005 8 0.00
1006 21 0.00
1007 7 0.00
1008 10 0.00
1010 5 0.00
1011 1 0.00
1013 9 0.00
1014 3 0.00
1015 4 0.00
1016 11 0.00
1017 7 0.00
1020 6 0.00
1021 12 0.00
1022 3 0.00
1023 1 0.00
1024 120 0.01
1025 60 0.01
1026 52 0.01
1027 47 0.01
1028 29 0.00
1029 35 0.00
1030 55 0.01
1031 105 0.01
1032 109 0.01
1033 50 0.01
1034 57 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
GGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCT
AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCGTAA
GTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGG
ATCGGCCGGGTCCCCCTCTGCGTGCTGCGATCCTGCTACCACAACCCTCGGTCTGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGAGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
Found at i:11722301 original size:26 final size:26
Alignment explanation
Indices: 11722265--11722316 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11722255 CTGGTCTGAT
11722265 CTTAGACTGGGAATGAACATC-GTATG
1 CTTAGACTGGGAATGAAC-TCTGTATG
11722291 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11722317 GCTAAGGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11723219 original size:26 final size:26
Alignment explanation
Indices: 11723168--11723219 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11723158 CCAATCCGAT
* *
11723168 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
11723194 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
11723220 GCTAAGTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:11723422 original size:903 final size:891
Alignment explanation
Indices: 11719004--11724083 Score: 6132
Period size: 903 Copynumber: 5.7 Consensus size: 891
11718994 ACGGGCGGTC
* * * *
11719004 GGTGGGTTTAGGCACAGCTTGATATTTGTGT-GTGCCAAAGCCATTTTTATGGCTTGTAAATTCA
1 GGTGGGTTTAGGCACATCTTCATATTT-T-TCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * ** * *
11719068 TATAGTGGTCCCTTAAGCCTTCGTGTGAAGTTTCGTGGCAAGATGACTTGTTTTCTATTTTTCAC
64 TACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAC
** * * ** * *
11719133 GATTTTTGAAAGATTTCGCGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAA
129 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCTAA
* ** * * *
11719198 ACTTGGTAGACATGATCGTTTTATTTTTGTTGCCATGCACAAAAACATTCAGCTACAAAA-TCGA
194 ACTTGGTAGACGTGATCCCTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTA-AAAACTCGA
*
11719262 AGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
257 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
11719327 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
322 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
11719392 ATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAC-CCCCCCGG
387 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA
* * * *
11719456 CCCCCCAGATCGTCGGAACCCCAATGCCGCCGTTCAGGTTCT-CTGGCGATGCTCCGACGATGGT
452 CCCCCCCGATCGTCGGAACCCCAATG-CTCCGGTCAGGTTCTCCT---G-TG-T-CG-GGATGGT
* * * * *
11719520 GCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCCCAACCCTC
509 GCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTT
* * * * * * * * * * *
11719585 GGTGTAGTCTGATCTTAGACCGAGAATGAACTTCGTATGCTTTGACTGTGAATGAACGCCATATT
574 GATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * * * *
11719650 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGCGGCATGCATAAGC
639 GCTAAGTCAATCCATGAAATGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGC
* * ** * * * * *
11719715 CGGGGATCGGTTGGGTCCCCCTCTGCATGCTGCCAATCTTGCTGCCAG-ATCCCTCGGTCTGGTT
704 CGGGGATCGG-CGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACC-GCAACCCTCGGTTTGGTC
* * *
11719779 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGGAACGAGCGGGCGGGT--G
767 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-AAGAAAC-AGCGGGCGGGTGGG
* ** ** * * *
11719842 -G-GCGGGCACTACGTCAACTTGAGAGACGGGATGTGTAAGTCGTGGATCGATAGGGTGGTA
830 CGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
11719902 GGTGGGTTTAGGCACATCTTCATACTTCTACGTGTCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATA-TTTTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
11719967 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATG
65 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
* * * *
11720032 ATTTTTGAAACTTTTTGCGGTTTCAGGATTTGTTAAAATTTTTTCGAAAGGAGTTTTGGACCC-A
130 ATTTTTGAAACTTTTTGCGG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGG-CCCTA
* *
11720096 AACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGA
193 AACTTGGTAGACGTGATCCCTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
11720161 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTG
257 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
11720226 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGG
322 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
11720291 ATAGGGGACCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCC-A
387 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA
* * * ** **
11720355 GCCCCCCCGATCGCCGGAACCTCAATGCCGCCCATCAGGTTCT-CTGGCGATGCTCCAACGATGG
452 -CCCCCCCGATCGTCGGAACCCCAATG-CTCCGGTCAGGTTCTCCT---G-TG-T-C-GGGATGG
* * * * * * * * *
11720419 TG-CCCGGGGAAGAAAAATGTGGCGCCAGCAAATGCCTGAGCCCAGTATGTGCTACCCCAACTCT
508 TGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
11720483 CGGTCTGGTCCGATCTTAGACTGGGAATCAACTCCGTATGCTTAGAC-GGAGAATGAACTCCGTA
573 TGATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG-GAATGAACTCCGTA
* * * * * * *
11720547 T-GCGTAAGTGAACCCACGAAATGAGCATGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACA
637 TGGC-TAAGTCAATCCATGAAATGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCACA
* * * * * * * *
11720611 ATCCGGGGACCGGCCGGGTCCCCCTCTGTGTGCTGGC-AATCCTACTACCTCAACCCTCAGTCTG
701 AGCCGGGGATCGG-CGGGTCCCCCTCTGCGTGCT-GCTGATCCTGCTACCGCAACCCTCGGTTTG
* * *
11720675 GTCCGATCTTGGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACA-AAACGAGCGGGCGGG
764 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-A-AGAAAC-AGCGGGCGGG
* * * * * *
11720739 CGAGCGCGGGGGCACTACCCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
826 TGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
11720804 A
891 A
*
11720805 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTT-TTCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* ** *
11720870 ACAATGGTCCTTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
65 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
** * * * *
11720935 ATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
130 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCTAAA
** * *
11721000 CTTGGTAGATTTGATCCTTGTATTTTTGTTGGCATGCA-AAAAACAATTCAGCTAAAAACTTGAA
195 CTTGGTAGACGTGATCCCTGTATTTTT-TTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAA
* * *
11721064 GTGTACAAGATTTTGTCACCACTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGG
258 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
11721129 CAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTATGAGGGA
323 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
11721194 TAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCCTGG
388 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GA
* * * * *
11721259 CCCCCTCGATCGCCGGAACCCCAATGC-CGTCGATCAGG-TCTCCGGCGATGCTTCGACGATGGT
452 CCCCCCCGATCGTCGGAACCCCAATGCTC--CGGTCAGGTTCTCC--TG-TG--TCG-GGATGGT
** * * * *
11721322 GCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGGCCAGCATGTGTTGCTGCAACCC--
509 GCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTT
*
11721385 --TC--G---G----T---CT---AAT---C--CG-AT-CTTAGACTGGGAATGAACTTCGTATG
574 GATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
11721426 CCTAAGTCAA-CTCACGAAATGAGCATGCGAGCGGTCAGCCGGCTAGAGGGGCGGGATGCGCAAG
639 GCTAAGTCAATC-CATGAAATGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG
* * * ** *
11721490 CTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCCATTTGATC
703 CCGGGGATCGG-CGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTTTGGTC
* * * * **
11721555 CGATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAG-AACGAGCGGGCAGACGG
767 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CA-AGAAAC-AGCGGGCGGGTGG
* * *
11721619 GCGAACGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGAT-GGGTGGTA
829 GCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
11721681 GGTGGGTTTAGGCACATCTTCATGTTTCTACATGCCAATGCCATTTTGATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTT-TTCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* ** * *
11721746 ACAATGGTCCCTTAAGCCTTCAGGT-AAGGTTTCATGGCAAGACAACTCGTTTTCCA-TTTTCAT
65 ACAATGGTCCCTTAAGCCTTCAAGTGAA-GTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAC
* * * ***
11721809 GATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTATTAA
129 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCTAA
* * * * *
11721874 ACTTGGTAGACGTGATACTTGTATTTTTATTGGCTTGCACAAAAAAAATCAGCTAAAAACTCAAA
194 ACTTGGTAGACGTGATCCCTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * ** **
11721939 GTGTTCAATATTTTGTGACCATTTGAAAAAAGTGTCTGCATTTTTGACACTTTAATGGCTACTGG
258 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
11722004 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTTATGAGGGA
323 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
11722069 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGACACCCCCCCGG
388 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGA
* * * *
11722134 CCCCCCCGATCGTCGAAACCCTAATGCTACCGATCAGGTTCT--T-TG--GCGATGGTGCCCCGG
452 CCCCCCCGATCGTCGGAACCCCAATGCT-CCGGTCAGGTTCTCCTGTGTCGGGATGGTGCCCCGG
* * *
11722194 TGAAGAAAAATGCAGCACCAGCACTTGCCCAAGCCCAGCATGTGCTGCCGCAACCCTTGATCTGG
516 TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGATCTGG
* * * *
11722259 TCTGATCTTAGACTGGGAATGAACATCGTATGCTTAGACTGGGAATGAACTCTGTATGGCTAAGG
581 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGT
* * * * *
11722324 CAATCCATGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGTCGGGAAT
646 CAATCCATGAAATGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGAT
* * * *
11722389 CGACCGGGTCCCCGTCTACGTGCTGCTGATCCTGCTACTGCAACCCTCGGTTTGGTCCAATCTTA
711 CG-GCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTTTGGTCCAATCTTA
* * * *
11722454 TACTGGGAATGAACTCCATATGCCTAAGCCAACCAACGACACAGCGGGCGGGTGGGCGGGCGGGC
775 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCAA-GAAACAGCGGGCGGGTGGGCGAGCGGGC
* * *
11722519 ACTACGCCGACCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTA
839 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
11722572 GGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTTT-CATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
11722637 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
65 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
** * *
11722702 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCTAAA
130 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCTAAA
* *
11722767 CTTGGTAGACGTGACCCCTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAG
195 CTTGGTAGACGTGATCCCTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
11722832 TGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCAACTGGC
259 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
11722897 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGGGGGAT
324 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * * *
11722962 AGAGGGCCAATATAAGGGCCAAGTACCAACCCCCATTGCACAACATGTGCGCACACGCCCCCGAC
389 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGAC
11723027 CCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGC
453 CCCCCCGATCGTCGGAACCCCAATGCT-CCGGTCAGGTTCTCC--TG-TG-T-CGG-GATGGTGC
* * * *
11723092 CCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGA
511 CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGA
*** * * *
11723157 TCCAATCCGATCTTAGACTAGGAATGAACTTCGTATGCTTATACTGGGAATGAACTCCATATGGC
576 TCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGGC
* *
11723222 TAAGTTAATCCATGAAATGAGCGTACGAGCGCTCAGCCGGCCGGAGGGGCGGGATGCACAAGCCG
641 TAAGTCAATCCATGAAATGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCG
* * * *
11723287 GGGATCGGCATGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTTGGTCTGGTCCAA
706 GGGATCGGC-GGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTTTGGTCCAA
* * *
11723352 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAGTGGGCGGGTGGGCTAG
770 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAA-GAAACAGCGGGCGGGTGGGCGAG
* * *
11723417 CGGGCACTAGGTCGGCCAGAGAGACGGTATGCGCAAGCCGTGGATCGATAGGGTGGTA
834 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
11723475 GGTGGGTTTAGGCACATTTTCATATTTCTTAATGCCAATGCCATTTTTATGGCTTGT-AATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTT-TTCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
11723539 ACAATGGTCCCTTAAGCCCTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
65 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
* * *
11723604 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGATGG-TGTTTCGGCCCCAA
130 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAT-TTTTGGCCCTAA
* *
11723668 ACCTGGTAGACGTGATCCCTGTACTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAA
194 ACTTGGTAGACGTGATCCCTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
11723733 GTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
258 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
11723798 CAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGA
323 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
11723863 TAGGGGGCCAATATAAGTGCCAAGTGCCAGCACCAATCGCACATCATGTGTGCACACCCCCC-AG
388 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA-
* * *
11723927 CCCCTCCGATCGTCGGAACACCAATGC-CTCGGTCAGGTTCTCC-G-G-C--GATGGTGCCCCGA
452 CCCCCCCGATCGTCGGAACCCCAATGCTC-CGGTCAGGTTCTCCTGTGTCGGGATGGTGCCCCGG
* * * * *
11723986 CGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCTAGCATGTGCTGCCGCAACCCTTGGTCTGG
516 TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGATCTGG
* *
11724051 TCCGATCATAGATTGGGAATGAACTTCGTATGC
581 TCCGATCTTAGACTGGGAATGAACTTCGTATGC
11724084 CTAAGTCAAC
Statistics
Matches: 3658, Mismatches: 430, Indels: 197
0.85 0.10 0.05
Matches are distributed among these distances:
865 61 0.02
866 1 0.00
869 2 0.00
870 2 0.00
871 1 0.00
874 1 0.00
875 319 0.09
876 134 0.04
877 230 0.06
878 6 0.00
879 2 0.00
881 3 0.00
884 6 0.00
887 3 0.00
889 98 0.03
890 63 0.02
891 284 0.08
892 333 0.09
894 1 0.00
895 1 0.00
896 1 0.00
897 2 0.00
898 137 0.04
899 532 0.15
900 84 0.02
901 41 0.01
902 641 0.18
903 667 0.18
904 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
GGTGGGTTTAGGCACATCTTCATATTTTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCTAAAC
TTGGTAGACGTGATCCCTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCC
CCCGATCGTCGGAACCCCAATGCTCCGGTCAGGTTCTCCTGTGTCGGGATGGTGCCCCGGTGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGATCTGGTCCGA
TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAATC
CATGAAATGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCG
GGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGGTTTGGTCCAATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCAAGAAACAGCGGGCGGGTGGGCGAGCGGGCACTACGC
CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
Found at i:11724245 original size:26 final size:26
Alignment explanation
Indices: 11724203--11724255 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11724193 TCAGTCCGAT
*
11724203 CTTAGACTGGCACTGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
* *
11724229 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
11724255 C
1 C
11724256 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:11725128 original size:26 final size:26
Alignment explanation
Indices: 11725099--11725151 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11725089 CCGATCCGAT
*
11725099 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
11725125 CTTAGACAGGGAATGAACTCCTTATG
1 CTTAGACAGGGAATGAACTCCGTATG
11725151 C
1 C
11725152 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:11729415 original size:26 final size:26
Alignment explanation
Indices: 11729386--11729438 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11729376 CCGGTCCGAT
*
11729386 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11729412 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11729438 C
1 C
11729439 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11730315 original size:26 final size:26
Alignment explanation
Indices: 11730286--11730338 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11730276 TCAGTCCGAT
*
11730286 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
11730312 CTTAGATTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
11730338 C
1 C
11730339 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:11730501 original size:26 final size:26
Alignment explanation
Indices: 11730465--11730543 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
11730455 TCGGTCTGAT
11730465 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11730491 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11730517 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11730543 C
1 C
11730544 CTATGTCAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11730680 original size:211 final size:205
Alignment explanation
Indices: 11730286--11730702 Score: 573
Period size: 211 Copynumber: 2.0 Consensus size: 205
11730276 TCAGTCCGAT
*
11730286 CTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAAGGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCC
* * *
11730351 ACGAAACGAGCGTACGGGCGAGTCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGAGTCCC
66 ACGAAACGAACGTACGGGCGAGTCCAGAGGGGCAGGATGCGCAAGACGGGGATCGACCGAGTCCC
* * * ** * ** * *
11730416 CCTCTGTGTGCTGTCGATCCTACTGTCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGA
131 CCGCTGTGTGCTGCCAATCCTACTACCGCAACCCTCAATCCGGTCTAATCTTAGACTGGGAATGA
11730481 ACTCCGTATG
196 ACTCCGTATG
* *
11730491 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCC
* * * * *
11730556 ACGAAACGAACGTGCGGGTGCATAGCTGGCCAGAGGGGCGGGATGCGCGAGAGGGGGATCGACCG
66 ACGAAACGAACGTAC-GG-GC-GAG-T--CCAGAGGGGCAGGATGCGCAAGACGGGGATCGACCG
* *
11730621 GGTCCCCCGCTGTGTGCTGCCAATCCTACTACCGCAACCCTCAATCCGTTCTAATCTTAGACTGG
125 AGTCCCCCGCTGTGTGCTGCCAATCCTACTACCGCAACCCTCAATCCGGTCTAATCTTAGACTGG
11730686 GAATGAACTCCGTATG
190 GAATGAACTCCGTATG
11730702 C
1 C
11730703 CTAAGCCAAC
Statistics
Matches: 183, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
205 75 0.41
206 2 0.01
207 2 0.01
208 2 0.01
209 1 0.01
211 101 0.55
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (205 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAACGTACGGGCGAGTCCAGAGGGGCAGGATGCGCAAGACGGGGATCGACCGAGTCCC
CCGCTGTGTGCTGCCAATCCTACTACCGCAACCCTCAATCCGGTCTAATCTTAGACTGGGAATGA
ACTCCGTATG
Found at i:11731805 original size:25 final size:25
Alignment explanation
Indices: 11731771--11731818 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
11731761 TCCGATCTTA
*
11731771 GACTGGGAATGAACTTCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
*
11731796 GACTGGGAATGACCTCCGTATGC
1 GACTGGGAATGAACTCCGTATGC
11731819 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:11732699 original size:26 final size:26
Alignment explanation
Indices: 11732661--11732713 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11732651 TCTGCCTGAT
11732661 CTTAGACTAGGAATGAACTCCG-TATG
1 CTTAGACTAGGAATGAAC-CCGTTATG
*
11732687 CTTAGACTCGGAATGAACCCGTTATG
1 CTTAGACTAGGAATGAACCCGTTATG
11732713 C
1 C
11732714 CTAAGCTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCGTTATG
Found at i:11733581 original size:26 final size:26
Alignment explanation
Indices: 11733545--11733597 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11733535 CTGGTCTAAT
*
11733545 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
11733571 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
11733597 C
1 C
11733598 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:11737525 original size:876 final size:875
Alignment explanation
Indices: 11731586--11739737 Score: 9957
Period size: 876 Copynumber: 9.3 Consensus size: 875
11731576 ATGCCTAAGC
* * * * * *
11731586 ACCAGCACCTATCGCACATCATGTGCGCACA-CCCCCTGGCCCCCTCGATCGCCAGAACCTCAAT
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCTCC-CGATCGTCGGAACCCCAAT
* * * **
11731650 GCCACCGGTCATGTTCTCTGGTGATGCTCCAACGATGGTGCCCCGGTGAAGAAAAATGCGGCACC
65 GCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * *
11731715 AACACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTGTGGTCCGATCTTAGACTGGGAA
130 AACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-----GGTCCGGTC-----C---G-A
*
11731780 TGAACTTCGTATGCTTGACTGGGAATGACCTCCGTATGCCTAAGTCAACCCACCG-AACGAGCGT
181 T---C-T--TA-----GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGT
* * * * * * *
11731844 TCGGGTGCACAGTCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACGGGGTCCCCCTCTAC
234 GCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTAT
* ** * * * * *
11731909 GTGCTGCCGATCCTGCTTTCACAACCCTCGGTCCAGTCCGATCTTAGAATGGGAATGAACTCCGT
299 GTGCTGCCGATCCTACTGCCGCAACCCTCAGT-CTGTCCAATCTTAGACTGGGAATGAACTCCGT
* * *
11731974 ATGCCTAAGCCAACCGACGAGACGA---GCGGAC--G--GGTGGGCACTACGCCGGCCAGAGAGA
363 ATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGA
* * *
11732032 CGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTGT
428 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * ** * *
11732097 GTTCCAATGTGATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTATGCCTTCACGTGAAGTT
493 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * **
11732162 TCATGGCAACACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACTATTCGGGATTTT
558 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTT
* *
11732227 TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTG
623 TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * *
11732292 GCACGGATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
688 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* **
11732357 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGGAAAATCTCAAATGCTCTTTA
753 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTA
* * * **
11732422 AGGGTGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAACAGCCAAGT
818 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
11732480 ACCAGCACCCATCGCACATCATGTGCGCACACCCCGCCGGCCCCCACGATCGCCAGAACCCCAAT
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCTCC-CGATCGTCGGAACCCCAAT
* * * * * *
11732545 GCCACCGGTCAGGTTCTCTGGTGATGCTCCGACGATAGTGGCTCGACAAAGAAAAATGCGACACC
65 GCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
*
11732610 AACACATTCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGCCTGATCTTAGACTAGGAAT
130 AACACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC-G---G-TC-----C---G---
* * * *
11732675 GAACTCCGTATGCTTAGACTCGGAATGAAC-CCGTTATGCCTAAGCTCAACCAATGAAAACTAGC
175 G---TCCG-AT-CTTAGACTGGGAATGAACTCCG-TATGCCTAAG-TCAACCCACG-AAACGAGC
* * * * *
11732739 GTAGCGACGTGCCGCAGTC-GCCAGAGCGGC-GG-TGCGCAAG-CGGGCATC-AGCTGGGTCCCC
232 GT-GCG-GGTG-CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CTGGGTCCCC
* * * *
11732799 CTCTGTGTTGCCTGCCTATCCTACTGCCGTATA-TCTCAGTCCTGT-CAATCTTTAGACTGGGAA
293 CTCTATG-TG-CTGCCGATCCTACTGCCGCA-ACCCTCAGT-CTGTCCAATC-TTAGACTGGGAA
* * * *
11732862 TGAACTCCGTACGCCTAAGCCAACTGACGAAACGA-TGGCGGGC--G--GGCGGGCAACTACGTC
353 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCAGGCGGGC-ACTACGCC
* *
11732922 GGCCCAGAGAGACGGGAATGCGCACAGCCGTGGATCGATAGGGCGGTAGGTGGGTTGGAGGCACA
417 GG-CCAGAGAGACGGG-ATGCGCA-AGCCGTGGATCGATAGGGTGGTAGGTGGGTT-TAGGCACA
* *
11732987 TCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGCCTTAAG
478 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
11733052 CCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCT-TTTTTCACT-ATTTTCAAAAATTTT
543 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTCGAAACTTTT
* *
11733115 TGCGGTTCGGGATTTTTTAAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
607 TACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
*
11733180 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGT
672 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
11733245 GACCATTTGAAAAAAGTGACCCCATTTTAGACACTTTAAT-GCTACTGGCAGCAAACCTCTAAAA
737 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAA
* *
11733309 TGTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
802 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
11733374 AGGCCAAGT
867 GGGCCAAGT
* *
11733383 ACCAGCACCCTTCGCACATCATGTGCGCACA-----CC--CC-CCCGATCGCCGGAACCCCAATG
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCTCCCGATCGTCGGAACCCCAATG
* *
11733440 CCATCGGTCAGG---T----T-A---TCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCA
66 CCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
11733494 ACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCTAATCTTAAACTGGGAAT
131 ACACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC-GG-----TC-----C---G---
* * * *
11733559 GAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGGAATGAGCGTG
175 G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * * **
11733624 CAGATGCTCAGCCAGCCAGAGGGACGGGATCCGTAAGCCGGGGATTGACTGGGTCCCCCTCTGCG
235 CGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTATG
* * * * * *
11733689 TGCTGCCGATCCTACTACAGCAGCCCTCATTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTA
300 TGCTGCCGATCCTACTGCCGCAACCCTCA-GTCTGTCCAATCTTAGACTGGGAATGAACTCCGTA
* * * *
11733754 TGCCTAAGCTAACCAACGAAACGAGCGGACGGGCGGGTAGGCGGGCACTACACCGGCCAGAGAGA
364 TGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGA
* * *
11733819 CGGGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
428 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * *
11733884 ATGCCAATGCCATTTTTGTGGCTTGTAAAATCATACAATGGTCGCTTAAGCCTTCACGTGAAGTT
493 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * * *
11733949 TCATGGCAA-A-GACTCATTTTTTATTTTTCACGATTTTGGAAACTATTTACGGTTCGAGATTTT
558 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTT
* * *
11734012 TTAAAATTTTTTCGCAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTT-TTG
623 TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
11734076 GCATGCACAAAAAAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
688 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
11734141 TGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
753 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTA
* *
11734206 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAACATAAGGGCCAAGT
818 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
11734264 ACCAGCACCCATCACACATCATGTGCGCAAACCCCCCCGGCCCCCTCAATCGTCGGAACCCCAAT
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCTCC-CGATCGTCGGAACCCCAAT
* * * * * * * *
11734329 GTCGCCAGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCTCGATGAAGAAAAATGCGGCACC
65 GCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * *
11734394 AACACATACCCAAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
130 AACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * * * * *
11734459 TGAATTCCGTATGCCTGAGTCAACCCACGAAATGAGCGTACGGGTGCTCAACCGACCATAGGGGC
195 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC
* * * * * *
11734524 GGGATGCGAAAGCTGGGGATCGACCGAGTCCCCCTCTATGTGCTGCCGATCCTACTACTGCAACC
260 GGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTATGTGCTGCCGATCCTACTGCCGCAACC
* * * * *
11734589 CTCAATCCGGACCAATCTTAGACTGGGAATGAAATCCGTA----T--G-C-ACCGACAAAACGAG
325 CTCAGT-CTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * *
11734646 CGGGCGGGCAGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAAT
389 C-GGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * *
11734711 AGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTTTGGCTTT
453 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* ** *
11734776 TAAATTCATACAATGGTCCCTGAAGCCTTCACACGAAGTTTCATGGCAAGACGACTCGTTTTTTA
518 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * * * *
11734841 TTTTTCACGATTTTTGAAACTTTTTGCGATTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTT
583 TTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
* *
11734906 GGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAA
648 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
11734971 AACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATG
713 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
11735036 GCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCGCGAGGTATG
778 GCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
11735101 ATGGGGGATAGGGGGCCAATATAAGGGCCAAGT
843 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
11735134 ACCAGCACCCATCGCACATCATGTGCGCACACCCCGCCGGCCCCCCCGATCGTCGGAACCCCAAT
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCTCCCGATCGTCGGAACCCCAAT
*
11735199 GCCACCGGTCAGG-T-T-C-----T-CT---A-G-T-G-G-CCCGACGAAGAAAAATGCGACACC
65 GCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * ** *
11735247 AACACATTCTCGAGCCCAGCATGTGCTGTTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAA
130 AACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* *
11735312 TGAACTCCGTATGCCTAAGTCAACCCACGATACGAGCGTGCGGGTGCGCAGCCGGCCAGAGGGGC
195 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC
* * * *
11735377 GGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGTTGCCTATCCTACTGCCGCAACC
260 GGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTATGTGCTGCCGATCCTACTGCCGCAACC
* * *
11735442 CTCGGTCCTGTCCAATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACTGACG----GA-
325 CTCAGT-CTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* ** *
11735502 C--CGGGCGGGCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATA
389 CGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * *
11735565 GAGCGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTGCATGCCAATGCCCTTTTTATGGCTTGT
454 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* *
11735630 AAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTTGTTTTCT-T
519 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
11735694 TTTTCACT-ATTTTCAAAAATTTTTATGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
584 TTTTCA-TGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
** * * *
11735758 GTTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAATCCAGCTAAA
648 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
*
11735823 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGACCCCATTTCAGACACTTTAATG
713 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
11735888 GCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTT-AGAGGGGTGTGAGTTCTCAAGGCTT
778 GCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAG-GGGGTGTGAGTTCTCGAGGTTT
*
11735952 GATGAGGGATAAGGGGCCAATATAAGGGCCAAGT
842 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
11735986 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCCGGCCTCCCGATAGTCGAAACCCCA
1 ACCAGCACCCATCGCACATCATGTGCGCACA---CCCCCCCGGCCTCCCGATCGTCGGAACCCCA
* * * * *
11736051 ATGTCGCCGGCCAGGCTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAGAAATGCGGCA
63 ATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* *
11736116 CCAAGACATGCCCGAGCCCAGCA-GTGCTGCCGGAACCCTCGGTCCGGTCCGATCTTAGACTGGG
128 CCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* * *
11736180 AATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTGTGGGTGCTCAGCCGGGCAGAGGG
193 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* ** * * * * *
11736245 GCGGGATACGCAAGAAGGGCATCAGAC-GGGTCCCCCTCTGTGTGCTACCGATCTTGCTGCCGCA
258 GCGGGATGCGCAAGCCGGGGATC-GACTGGGTCCCCCTCTATGTGCTGCCGATCCTACTGCCGCA
* * * *
11736309 ACCCTCGGTTTGGTCAAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAC
322 ACCCTCAGTCT-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
11736374 AAGCGGGCGGGTGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCATGGATC
386 GAGC-GGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* ** **
11736439 GATAGGGTGGTAGGTCGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATCAC
450 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * *
11736504 TTGTAAATTCATGCAATGGTCGCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
515 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * ** *
11736569 CTATTTTTCATGATTTTTGAAACTTGTTACGGTTCGGGATTTTTAAAAAAATTTTTAGAAGGAGT
580 CTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGT
* * *
11736634 TTTCGG-CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCACC
645 TTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
11736698 TAAAAACTC-AAGGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGACCCCATTTCAGACACTT
709 TAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
11736762 TAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
773 TAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
11736827 GTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGT
838 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * ** *
11736865 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCTTCCCGATCATCAAAACCCTAAT
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC-TCCCGATCGTCGGAACCCCAAT
* ** ** * *
11736930 GCCGCCGGTCAGGCCCTCCAATGATGCTCTGACGATGGTGCCACGACGAAGAAAAATGCGGCACC
65 GCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
*** * *
11736995 AACACATGCCCGAGCCCAGCATGTGCCATCGGAACCCTCGGTCCGGTCCAATCTTAGACTGGGAA
130 AACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * *
11737060 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTAC-GGTGCTTAGCCGGGCAGAGGGGC
195 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC
* * * * * * *
11737124 GGGATACGCAAGACGGGGATCGGAC-GGGTCCCCCTCTATGTGCTGCCAATCTTGCTGTCGTAAC
260 GGGATGCGCAAGCCGGGGATC-GACTGGGTCCCCCTCTATGTGCTGCCGATCCTACTGCCGCAAC
* *
11737188 CCTCAGTTTGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA
324 CCTCAGTCTG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
** *
11737253 GCGGCGGGCGGGCAGGCGGGCACTACGCCGGTTAGAGAGACGGGATGCGCAAGCCATGGATCGAT
388 GCGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* **
11737318 AGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCATGCCAATGCCATTTTTATCACTTG
453 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
11737383 TAAATTCATGCAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
518 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
11737448 TTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
583 TTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
* * * * *
11737513 GGGCCGAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACCAAACAATTCAGCTAAA
648 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
*
11737578 AACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
713 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
11737643 GCTTCTGGCAGCAAACCTATAAAATGC-CAAATGCTCTTTAACGGGGTGTGAGTTCTCAAGGTTT
778 GCTACTGGCAGCAAACCTCTAAAAT-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
11737707 GATGATGGATAAGGGGCCAATATAAGGGCCAAGT
842 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * *
11737741 ACCAGCACCCATCACCCATCAAGTGCGCACACCCCCTCGGCCCCCCGATCGTTGGAACCCCAATG
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCTCCCGATCGTCGGAACCCCAATG
* ** ** * *
11737806 CCACCGATCAGGTTCTCCGACGAAACTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCA
66 CCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * *
11737871 ACACATGCTCGATCCCAACATGTGCTGCCGTAACCCTCCGTCTGATCCGAGCTTAGACTGGGAAT
131 ACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-CG---G-T-----C-----C---G---
*
11737936 GAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
175 G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * *
11738001 CGGGTGCTCAGCCGGCCAGAGGGGCGGAATGCGCAATCCGGGGAACGA-TCGAGTCCCCCT-T-T
235 CGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTAT
* * * * **
11738063 GCATTCTGCCGATCCTACTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
299 G--TGCTGCCGATCCTACTGCCGCAACCCTCAGTCT-GTCCAATCTTAGACTGGGAATGAACTCC
* * * *
11738128 GTATGCCTAAGCCAACCGGCGAAAC-A--AGC-GG-GAG--GGCGGGTACTACGCCGGCCAGAGA
361 GTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGA
* * *
11738186 GACAGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCT
426 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
11738251 GCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
491 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * **
11738316 TTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCAAGATT
556 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATT
* * *
11738381 TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTTT
621 TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
11738446 TGCCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
686 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
11738511 AGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTT
751 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTT
*
11738576 TAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
816 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
11738636 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCCTCGGCCTCCCGATCGTCGGAACCCCAA
1 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-CGGCCTCCCGATCGTCGGAACCCCAA
* * ** * * *
11738701 TGCCGCCTGTCAGGTTCTCCGACGATGCTACGACGATGGTGCCCCGATGAA-AAAAATGCGGGAC
64 TGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
** * * *
11738765 CAACACATGCCCGAGCCCAGCATGTGCTATCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGA
129 CAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* *
11738830 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAGCCGGCCAGAGGGG
194 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGG
* * * *
11738895 CGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGTGTGTTTCCTATCCTACTGCCGCAAC
259 CGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTATGTGCTGCCGATCCTACTGCCGCAAC
** * ** * * *
11738960 CCTTGGTCCTGTCCAATCTTAGACAGAAAATGAACTCCGTACGCCTAAGCCAACTGACGAAACAA
324 CCTCAGT-CTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
11739025 GCGGGCCGGCGGGCAGGCGAGCACTACGCCGAG-CAGAGAGACAGGATGCGCAAGCCGTGGATCG
388 GC-GGCGGGCGGGCAGGCGGGCACTACGCCG-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* ** * *
11739089 ATGGGGCAGTAGGTGGG-ATAGGCACATCTTCATATTTCTACA-GTCCAATGCCATTTTTATGGC
451 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG-CCAATGCCATTTTTATGGC
* *
11739152 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTTGTTTT
515 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
11739217 CT-TTTTTCACT-ATTTTCAAAAATTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAT
580 CTATTTTTCA-TGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAG
*
11739280 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
644 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
11739345 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGACCCCATTTCAGACACTTT
709 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
11739410 AATGGTTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
774 AATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
11739475 TTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGT
839 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
11739512 ACCAGCAACCATCGTACATCATGTGCGCGCA-CCCCCCGGCCCTCCCGATCATCGGAACCCTAAT
1 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCTCCCGATCGTCGGAACCCCAAT
* * *
11739576 GCCATCGGTCAGGCTCTCCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACC
65 GCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * ** *
11739641 AACACATGCCCGAGCCCAGCATGTGCTACTAG-AACCCTCGGTCCAATCCGATCTCAGACTGGGA
130 AACACATGCCCGAGCCCAGCATGTGCTGC-CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* *
11739705 ATGAACTCCGTATGCCTAAGCCAACCGACGAAA
194 ATGAACTCCGTATGCCTAAGTCAACCCACGAAA
11739738 TGAACGGGCG
Statistics
Matches: 6383, Mismatches: 680, Indels: 409
0.85 0.09 0.05
Matches are distributed among these distances:
851 2 0.00
852 291 0.05
853 400 0.06
854 32 0.01
855 10 0.00
856 3 0.00
857 5 0.00
859 1 0.00
860 1 0.00
861 7 0.00
862 2 0.00
863 2 0.00
866 1 0.00
867 173 0.03
868 5 0.00
869 109 0.02
870 619 0.10
871 55 0.01
872 6 0.00
873 3 0.00
874 74 0.01
875 360 0.06
876 806 0.13
877 348 0.05
878 309 0.05
879 298 0.05
880 113 0.02
881 280 0.04
882 111 0.02
883 140 0.02
884 61 0.01
885 17 0.00
886 13 0.00
887 8 0.00
888 2 0.00
889 2 0.00
890 27 0.00
891 4 0.00
892 1 0.00
893 2 0.00
894 64 0.01
895 607 0.10
896 84 0.01
897 96 0.02
898 76 0.01
899 24 0.00
900 26 0.00
901 130 0.02
902 135 0.02
903 127 0.02
904 206 0.03
905 101 0.02
907 1 0.00
908 1 0.00
913 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (875 bp):
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCTCCCGATCGTCGGAACCCCAATG
CCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
ACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCG
GGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTATGTGCTGCCGATCCTACTGCCGCAACCC
TCAGTCTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
GCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGT
Found at i:11737950 original size:26 final size:26
Alignment explanation
Indices: 11737921--11737974 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
11737911 TCTGATCCGA
11737921 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
*
11737947 GCTTAGACTGGGAATGAACTTCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
11737973 GC
1 GC
11737975 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:11738406 original size:895 final size:889
Alignment explanation
Indices: 11737047--11739719 Score: 3665
Period size: 895 Copynumber: 3.0 Consensus size: 889
11737037 CCGGTCCAAT
* *
11737047 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGTGCTTAGCC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTGCTCAGCC
* * * * *
11737112 GGGCAGAGGGGCGGGATACGCAAGACGGGGATCGGACGGGTCCCCCTCTATGTGCTGCCAATCTT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACGGGTCCCCCTCTATGTTCTGCCAATCCT
* * * * *
11737177 GCTGTCGTAACCCTCAGTTTGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
130 ACTGTCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
11737242 CGACGAAACGAGCGGCGGGCGGGCAGGCGGGCACTACGCCGGTTAGAGAGACGGGATGCGCAAGC
195 CGACGAAAC-A--AGCGGG-GAG--GGCGGGCACTACGCCGG-CAGAGAGACAGGATGCGCAAGC
* * *
11737307 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCATGCCAATGCCATT
253 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATT
** * *
11737372 TTTATCACTTGTAAATTCATGCAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
318 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** * *
11737437 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCG
383 CTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
* * * * * *
11737502 GAAGGAGTTTTGGGCCGAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACCAAACA
448 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
*
11737567 ATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
513 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
11737632 ACACTTTAATGGCTTCTGGCAGCAAACCTATAAAATGC-CAAATGCTCTTTAACGGGGTGTGAGT
578 ACACTTTAATGGCTTCTGGCAGCAAACCTATAAAAT-CTCAAATGCTCTTTAA-GGGGTGTGAGT
* * * *
11737696 TCTCAAGGTTTGATGATGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACCCATC
641 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* *
11737761 AAGTGCGCACACCCCCTCGGCCCCCCGATCGTTGGAACCCCAATGCCACCGATCAGGTTCTCCGA
706 ATGTGCGCACACCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCACCG-TCAGGTTCTCCGA
** * * * *
11737826 CGAAACTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAACACATGCTCGATCCCAACA
770 CGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
*
11737891 TGTGCTGCCGTAACCCTCCGTCTGATCCGAGCTTAGACTGGGAATGAACTCCGTATG
835 TGTGCTACCGTAACCCTCCGTC--ATCCGAGCTTAGACTGGGAATGAACTCCGTATG
*
11737948 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGTGCTCAGC
* * * * *
11738013 CGGCCAGAGGGGCGGAATGCGCAATCCGGGGAACGATCGAGTCCCCCT-T-TGCATTCTGCCGAT
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CGGGTCCCCCTCTATG--TTCTGCCAAT
**
11738076 CCTACTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
127 CCTACTGTCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
11738141 AACCGGCGAAACAAGC-GGGAGGGCGGGTACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGT
192 AACCGACGAAACAAGCGGGGAGGGCGGGCACTACGCCGG-CAGAGAGACAGGATGCGCAAGCCGT
* *
11738205 GGATTGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCCTGCCAATGCCATTTTT
256 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTT
11738270 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTT
321 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTT
* **
11738335 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCAAGATTTTTTAAAATTTTTTTGGAA
386 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAA
* * *
11738400 GGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTTTTGCCATGCACAAAAAAATT
451 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
11738465 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
516 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
11738530 CTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTC
581 CTTTAATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTC
11738595 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
645 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
* *
11738660 GCGCACACCCCCCCTCGGCCTCCCGATCGTCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGACG
710 GCGCACA--CCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCACC-GTCAGGTTCTCCGACG
* *
11738725 ATGCTACGACGATGGTGCCCCGATGAA-AAAAATGCGGGACCAACACATGCCCGAGCCCAGCATG
772 ATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
*
11738789 TGCTATCGTAA----CC--C-T-CG-G--T---C------TG-A-TCCG-AT-
837 TGCTACCGTAACCCTCCGTCATCCGAGCTTAGACTGGGAATGAACTCCGTATG
*
11738818 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGTGCTCAGC
* * *
11738883 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGTGTGT-TTCCTATC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC-GGGTCCCCCTCTATGT-TCTGCCAATC
* * * * ** *
11738947 CTACTGCCGCAACCCTTGGTCCT-GTCCAATCTTAGACAGAAAATGAACTCCGTACGCCTAAGCC
128 CTACTGTCGTAACCCTCGGT-CTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
11739011 AACTGACGAAACAAGCGGGCCGGCGGGCAGGCGAGCACTACGCCGAGCAGAGAGACAGGATGCGC
192 AACCGACGAAACAAGC-GG--GGAGGGC--G-G-GCACTACGCCG-GCAGAGAGACAGGATGCGC
* ** * * *
11739076 AAGCCGTGGATCGATGGGGCAGTAGGTGGG-ATAGGCACATCTTCATATTTCT-ACAGTCCAATG
249 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTG-CCAATG
*
11739139 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAA
313 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
11739204 GACGACTTGTTTTCT-TTTTTCACTATTTTCAAAAATTTTTGCGGTTCGGGATTTTTTAAAATTT
378 GACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
*
11739268 TTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
443 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
*
11739333 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGACCCCAT
508 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
11739398 TTCAGACACTTTAATGG-TTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTG
573 TTCAGACACTTTAATGGCTT-CTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTG
* * **
11739462 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCAACCATCGT
636 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
* * * * *
11739527 ACATCATGTGCGCGCACCCCC-CGGCCCTCCCGATCATCGGAACCCTAATGCCATCGGTCAGGCT
701 ACATCATGTGCGCACACCCCCTCGGCCC-CCCGATCGTCGGAACCCCAATGCCA-CCGTCAGGTT
**
11739591 CTCCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGC
764 CTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGC
* * * *
11739656 CCAGCATGTGCTACTAG-AACCCTCGGTCCAATCCGATCTCAGACTGGGAATGAACTCCGTATG
829 CCAGCATGTGCTAC-CGTAACCCTCCGT-C-ATCCGAGCTTAGACTGGGAATGAACTCCGTATG
11739719 C
1 C
11739720 CTAAGCCAAC
Statistics
Matches: 1575, Mismatches: 141, Indels: 112
0.86 0.08 0.06
Matches are distributed among these distances:
869 1 0.00
870 177 0.11
871 6 0.00
872 7 0.00
873 6 0.00
874 74 0.05
875 45 0.03
876 303 0.19
877 109 0.07
878 54 0.03
879 2 0.00
880 1 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 3 0.00
886 2 0.00
887 1 0.00
890 1 0.00
891 1 0.00
892 2 0.00
894 4 0.00
895 459 0.29
896 41 0.03
897 79 0.05
898 4 0.00
899 6 0.00
900 4 0.00
901 57 0.04
902 123 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACGGGTCCCCCTCTATGTTCTGCCAATCCTA
CTGTCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACAAGCGGGGAGGGCGGGCACTACGCCGGCAGAGAGACAGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTT
CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTTCTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
ACCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCACCGTCAGGTTCTCCGACGATGCTCCGA
CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGT
AACCCTCCGTCATCCGAGCTTAGACTGGGAATGAACTCCGTATG
Found at i:11742012 original size:26 final size:26
Alignment explanation
Indices: 11741983--11742035 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11741973 CTGATCCTAT
* *
11741983 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11742009 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11742035 C
1 C
11742036 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11743735 original size:26 final size:26
Alignment explanation
Indices: 11743706--11743758 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11743696 CTGGTCCAAT
*
11743706 CTTAGACTGGGAACAAACTCCATATG
1 CTTAGACTAGGAACAAACTCCATATG
** *
11743732 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAACAAACTCCATATG
11743758 C
1 C
11743759 CCTAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACAAACTCCATATG
Found at i:11744043 original size:868 final size:860
Alignment explanation
Indices: 11741246--11744495 Score: 3521
Period size: 868 Copynumber: 3.7 Consensus size: 860
11741236 TGTGCTGCCA
* *
11741246 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * ***
11741311 ACGAGTGGGCTGAGCGGGCGGGCTCTACGCCGGCCAGAGAGACGGGATGTTCAAGCCGTGGATCG
66 ACGA----GCTGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATACGCAAGCCGTGGATCG
*
11741376 ATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
127 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * *
11741441 TGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCGTTTTC
192 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTC
* ** * * *
11741506 TATTTTTTACGATTTTTGAAACATTTTGCGGTTC-GCGATTTTTTAAAATTTTTTCAGAAGGAGT
257 TATTTTTCACGATTTTCAAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGT
** ** * * * *
11741570 TTTGGCCCCAAACTCAGTAGATGTGATCCTTGTATTTTTTTTAGCGTGCATAAAAAAATTCAGCT
321 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * ** * * *
11741635 ATAAATTTGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGAGACTTTA
386 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTA
* * * * *
11741700 ATGGTTACT-GCCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTTGAGA
451 ATGGCTACTAG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
11741764 TTTGATTAGGGATAGGGGCCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGT
515 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* *
11741829 ACACCCCCCCGACCCCCCCGATCGCCGGAACCCTAATGTCGCCGGTCAGGTTCTCCGACAATGCT
580 ACACCCCCCCGGCCCCCCCGAT----------C--A--T---CGG--A---AC-CC--CAATGC-
** * * *
11741894 CTGGCGATGGTTCCCCGACGAAGAAAAATGCGGGACCAGCACATGCCCGAGCCCAGCATGTGTTG
619 C--GC-------CCTAGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCACAGCATGTGCTG
**** ** * * ** **
11741959 TTGGAACCCTCAGTCTGATCCTATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATG
674 CCACAACCCTTGGTCTGGTCCAATCTTAGACTGGGAACAAACTCCATATGCTTAGACTAGGAATG
* * **
11742024 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGTTCAATCGGCCAGAGGGGCGG
739 AACTCCGTATGCCT-AGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * ** *
11742089 GATGCGCAAGCCAGGGATCGGCCAGGTCCCCCTGTACGTGCTGTCGATCCTCCCTACCA
803 GATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC-CACTGTCG
* ** * *
11742148 CAACCCTCGATCCAATTTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
11742213 ACAAG-T----GGGCGGGCACTACGTCGGCCAGAGAAACGGAATACGCAAGCCGTGGATCGATAG
66 ACGAGCTGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATACGCAAGCCGTGGATCGATAG
* *
11742273 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGCCTTGTA
131 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* *
11742338 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
196 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATT
** * * *
11742403 TTTCACGATTTTTGAAACTTTTTACGATTCAGGATTTTTTTAAATTTTTTCGCAAGGAGTTTTGG
261 TTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* ** * *
11742468 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTTTCATGCACAGAACAATTCAGCTAAAAA
326 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
11742533 CTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACATTTTAATGGC
391 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
* * * *
11742597 TACTGGCAGCAAACCTGTAAAATCTCAATTG-TCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGTT
456 TACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * ** *
11742661 GAGGGATAGGGTGCCAATATAAGGGCAAAGAACCAGCACCCATCTTACATCATGTGCGTACACCC
521 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* ** ******* * ** *
11742726 CCCCGGCCCCCCCGATC-GCTGGAACCCCAATGCCGTCGGTCAG-GTTCTCCGACGATGCTCCGG
586 CCCCGGCCCCCCCGATCATC-GGAACCCCAATGCCG-CCCT-AGAGAAGAAAAATGCGGCACC--
** * * ** * * * * * * ** * * *
11742789 AG-ATGGTGCCCCGA-CAAAGAAAAATAC-GGCACCAGCACATGCTCAAGCCCAGCATTTTCTG-
646 AGCA-CATG-CCCGAGCACAG-CATGTGCTGCCA-CAACCCTTGGTCTGGTCCA--ATCTT-AGA
* *** ** * *
11742850 CT-GCAACCCTCGGTGCGGTCCGAT-CTTAGACTGGGAATGAACTCCGTATGCCAAGTCAACCCA
704 CTGGGAACAAAC--T-C---CATATGCTTAGACTAGGAATGAACTCCGTATGCCTAGTCAACCCA
* * * * * * *
11742913 CGAAACGAA-CGTATGGGCGCTGAGCCTGCTAGAAGGGCGGGATGCGCAAGCCAGGAATCGGCCG
763 TGAAAC-AAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCG
* ** *
11742977 GGTCCCCCTCTGCATGCTGCCGATCCTGCTGTTG
827 GGTCCCCCTCTGCGTGCTGCCGATCCCACTGTCG
* * * * *
11743011 TAACCCTCGGTCCGATCC-AACTTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGA
1 CAACCCTCGGTCCAATCCGATC-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * ** * *
11743075 AACGAGC-CGGCGGGTGGGCACAACATCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCAATA
65 AACGAGCTGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATACGCAAGCCGTGGATCGATA
* *
11743139 GGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATACCATTTTTATGGCTTGT
130 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
* * *
11743204 AAACTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTGT
195 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTAT
* * **
11743269 TTTTCATGATTTTCAAAACTTTTTACGGTTCTGGATTTTTTAAAATATTTTT-GGAAGGTTTTTT
260 TTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTT
* ** * *
11743333 GGCCCCAAACTTGGTAGACGTGATCCTTCCATTTTTGTTGGCATGTACAAAAAAATTCAGCAAAA
324 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
11743398 AAATCAAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATG
389 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATG
* * *
11743463 GCTACTAGCAGCAAACCTGTAAAATCTCAATTGCACTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
454 GCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * * * *
11743528 ATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCAATCACACATCTTGTGGGCACA-
519 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* *
11743592 CCCCCTGGCCCCCCCGATCATCGGAACCCCAATGTCGCCCTAGAGAAGAAAAATGCGGCACCAGC
584 CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCCTAGAGAAGAAAAATGCGGCACCAGC
* *
11743657 ACATGCTCGAGCTCAGCATGTGCTGCCACAACCCTTGGTCTGGTCCAATCTTAGACTGGGAACAA
649 ACATGCCCGAGCACAGCATGTGCTGCCACAACCCTTGGTCTGGTCCAATCTTAGACTGGGAACAA
*
11743722 ACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCCTAGTCAACCCATGAAACAAGCGTGCG
714 ACTCCATATGCTTAGACTAGGAATGAACTCCGTATG-CCTAGTCAACCCATGAAACAAGCGTACG
** *
11743787 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCCTCTGTGT
778 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGT-CCCCCTCTGCGT
*
11743852 GCTACCGATCCCACTGTCG
842 GCTGCCGATCCCACTGTCG
**** * *
11743871 CAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
11743936 ATGAGGGGGCGATCGGGCGGGCGAGCACTACGCCGACCAGAGAGACGGGATACGCAAGCCGTGGA
66 ACGA----GC--T-GGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATACGCAAGCCGTGGA
*
11744001 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
124 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
11744066 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
189 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
** * * * *
11744131 TTCTATTTTTCATAATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAGGGC
254 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG-
* * *
11744196 A-TTTTGGTCCCATACTTGGTAGACATGATTCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
318 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
11744260 GCTAAAAACTCAAAGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
383 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
* * * *
11744324 TTAATAGCTAC-AG-AGCAAACCTATAAGATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGA
448 TTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
11744387 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTAC
513 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
** * * *
11744452 GCACA-CCCCCCGGCCCTTCTGATCGTCAGAACCCCAATGCCGCC
578 GCACACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCC
11744496 AGTCAAGTTC
Statistics
Matches: 1969, Mismatches: 327, Indels: 141
0.81 0.13 0.06
Matches are distributed among these distances:
856 6 0.00
857 4 0.00
858 36 0.02
859 80 0.04
860 86 0.04
861 10 0.01
862 10 0.01
863 65 0.03
864 104 0.05
865 178 0.09
866 13 0.01
867 344 0.17
868 415 0.21
869 82 0.04
872 1 0.00
873 1 0.00
874 2 0.00
881 1 0.00
891 100 0.05
892 70 0.04
893 295 0.15
894 1 0.00
897 1 0.00
898 1 0.00
902 63 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (860 bp):
CAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCTGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATACGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATT
TTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
TACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCCTAGAGAAGAAAAATGCGGCACCAGCAC
ATGCCCGAGCACAGCATGTGCTGCCACAACCCTTGGTCTGGTCCAATCTTAGACTGGGAACAAAC
TCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAGTCAACCCATGAAACAAGCGTACGGGC
GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTG
CCGATCCCACTGTCG
Found at i:11744651 original size:26 final size:26
Alignment explanation
Indices: 11744607--11744663 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
11744597 CTGGTTCGAT
*
11744607 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
11744633 CTTAGACTGGTAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
11744659 TTTAG
1 CTTAG
11744664 CAGTAGCACA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:11746119 original size:159 final size:159
Alignment explanation
Indices: 11745830--11746166 Score: 471
Period size: 159 Copynumber: 2.1 Consensus size: 159
11745820 ACTCCCTATG
* ** **
11745830 CTTAGACTGGGAATGAACTATGTATGCCTATGTCAACCCACGAAATGAGCATACGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTATGTATGCCTAAGTCAACCCACGAAACAAGCATACGGGTGCTCAAC
* * * *
11745895 CGGTCAGAGGGGCGAGATGCACAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGAGATGCACAAGTCGGGGATCGGCCAGGTCCCCCTCTACGTGCTGCCGATCC
*
11745960 TGCTACCGCAACCCTCGGTCCGATCCGAT
131 TGCTACCGCAAACCTCGGTCCGATCCGAT
* *
11745989 CTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAA
1 CTTAGACTGGGAATGAACTAT-GTATGCCTAAGTCAACCCACGAAACAAGCATACGGGTGCTCAA
* * *
11746053 CCGGCCAGAGGGGCGAGATGCGCAAG-CTGGGGATTGGTCAGGTCCCCCTCTACGTGCTGCCGAT
65 CCGGCCAGAGGGGCGAGATGCACAAGTC-GGGGATCGGCCAGGTCCCCCTCTACGTGCTGCCGAT
** * *
11746117 CCTGCTGTCGGAAACCTCGGTCCGATCTGAT
129 CCTGCTACCGCAAACCTCGGTCCGATCCGAT
11746148 CTTAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
11746167 CTATACACCT
Statistics
Matches: 157, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
158 2 0.01
159 155 0.99
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTATGTATGCCTAAGTCAACCCACGAAACAAGCATACGGGTGCTCAAC
CGGCCAGAGGGGCGAGATGCACAAGTCGGGGATCGGCCAGGTCCCCCTCTACGTGCTGCCGATCC
TGCTACCGCAAACCTCGGTCCGATCCGAT
Found at i:11749199 original size:26 final size:26
Alignment explanation
Indices: 11749170--11749222 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11749160 CCGATCCGAT
*
11749170 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11749196 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11749222 C
1 C
11749223 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11750957 original size:26 final size:26
Alignment explanation
Indices: 11750921--11750973 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11750911 CTGATCCGAT
11750921 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11750947 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11750973 C
1 C
11750974 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11752723 original size:26 final size:26
Alignment explanation
Indices: 11752687--11752739 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11752677 CTGATCCGAT
11752687 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11752713 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11752739 C
1 C
11752740 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11753197 original size:892 final size:896
Alignment explanation
Indices: 11747134--11757581 Score: 12673
Period size: 872 Copynumber: 11.9 Consensus size: 896
11747124 GATCGTTGGG
*
11747134 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAG
1 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
11747199 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGTATCCATCGCACATCATGTGTGCACACCCCCC
66 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGT-CGCACCCCCC
* * ** * * * *
11747264 CGGCCCCCCCGAATCGCCGGAACCCCAATGTCGCCAATAAGGTTCTTCGGCGATGCTCCGATGAT
128 CGGCCCCCCCG-ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * *
11747329 GGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACC
192 GGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * *
11747394 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAACTGGGAATGAACTCCGT
257 CTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGT
* * * * * * *
11747459 ATGCCAAAATCAACCTATGAAACGAGCGTACAGGTGCTCAGCCAGCCAGAGGGGTGGGATGCACA
321 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACA
* * * * * * * * * *
11747524 AGCCGGGGATCGGCCCGGTCCCTCTCTACGTGCTGTCGATCCTGCGGCCGCCAA-GCTCGGTCCG
386 AGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG-CAACCCTCGATCTG
* * *
11747588 ATCTGA-CTTAGACTTGGAATGAACTCCCGTATGGCCTAAAAGCCAACCGACGAAACGAGCGGAC
450 GTCTGATCTTAGACTGGGAATGAACT-CCGTAT-GCCT--AAGCCAACCGACGAAACGAGCGGGC
*
11747652 GGGCGGACAGAGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCGCG-GGATCGATTAG
511 GGGC-G---G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC-CGTGGATCGA-TAG
* * * **
11747716 GGTGGTAAGG-GGTTTTGTGGCACATCTTCATATTTCTG--TGGCCAAAGCCATTTTTATGGGAT
569 GGTGGT-AGGTGGGTTT-AGGCACATCTTCATATTTCTGCAT-GCCAATGCCATTTTTATGGCTT
*
11747778 GTAAATTTCATTAC-ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
631 GTAAA-TTCA-TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * *
11747842 TTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGTGT
694 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
** * *
11747906 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTGTGCACGAAAAAATTTCAGT
759 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGC
* *
11747971 TAAAAACTCAAAGTGTACCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
823 TAAAAACTCGAAGTGTA-CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
11748036 TAATGGCTAC
887 TAATGGCTAC
* *
11748046 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTTATGAG
1 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
11748111 GGATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCCCC
66 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CGCA-CCCCCCC
* * * * * * *
11748176 GACCCACCCGATCACCGGAACCCCAATGTCGTCGATAAGGTTCTCCGACGATGCTCCGACGGTGG
129 GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * * * *
11748241 TGCCCCGG-GAAAGAAAAATGCGGAACCAGCACATGCCTGAGCCCAGCATGTGCT-ACGACAACA
194 TGCCCCGGCG-AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCG-CAACC
* * * *
11748304 CTCGGTC-CAGTTCGATCTTATACTGGGAATGAACTCCGTATGC-TAGACTAGGAATGAACTCCG
257 CTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCG
** * * *
11748367 TATGCCTAAGTCAACAAATGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCAC
320 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCAC
* * * * * * *
11748432 AAGCCGAGGATTGGTCGGGTCCCTCTCTGCGTGTTGTCGATCCTACTTCTGCAACCCTC-AGTCT
385 AAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGA-TCT
** * * *
11748496 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGTGGG
449 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
** *
11748561 TAGGC--G--CTACGTCGGCC------A---GA---G--A------GA-C----GGGTGGTAGGT
514 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
11748597 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACA
579 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
11748662 ATGGTCCCTTAAGCCTTCACGTGAAGTTT-ATGGCAAGACGACTGGTTTTCTATTTTTCATGATT
644 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * ** * *
11748726 TTCGAAACTTTATGCGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTT
709 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
11748791 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACT-GAAAGTG
774 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTG
11748855 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
838 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
** * * *
11748914 TTACAGCGAACCTGTAAAATCTTAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
1 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *** * ** *
11748979 CGATAAGGGGCCAATATAAGGGATGAGTACCAGCACCCATCGCACGTCATGT-G----TGCCCGA
66 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCGCACCCCCCCGG
* * * * *
11749039 CCCCCCCGATTGTCGGAACCCCAATGTCGCCGGTCAAGTTCT-C--CG--G---CGAC---GGTG
131 CCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
* * * *
11749093 CCTCGGTGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCG
196 CCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* *
11749158 GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGC
261 GTCTGATCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGC
** * *
11749223 CTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCC
325 CTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCC
* ** * * * * * * * * *
11749288 GGGGATCGACCGGGT-TCCCTCAGCATGCTGTCGATCCTACTACCGTAACCCTTGGTCTGGTCTG
390 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCTGGTCTG
* *
11749352 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGAGCGGGCGGGC---C-
455 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* *** * * *
11749413 AGCACTATATCGACCAAAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
520 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
11749478 AGGCACATCTTCGTATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
585 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
11749543 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC-ACTCATTTTCTATTTTTCATGATTTTTGAA
650 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* *
11749607 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGACTTTTGGCCCCAAACTTGGTAGA
715 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
11749672 CGTTATCTTTTTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
780 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
11749737 TTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACGCTTTAATGGCTAT
845 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
11749789 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
1 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * * * * * *
11749854 GGATAAGGGGCCAATATAAGAGCCAAGTACCAGTATCTATCACACATCATGTACGCACACCACCT
66 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CGCAC-CCCCCC
* * ** * *
11749919 GGCCCCCCCGATCCCCGGAACCCCAATGTCACCGATAAGGTTCTCCGACGATGCTCCGACGATGG
129 GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * *
11749984 TGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCGCAA-CC-
194 TGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
*
11750047 C--TCT-AT-C---C----A----G--T---CT--GAT-CTTAGACTGGGAATGAACTCCGTATG
259 CGGTCTGATCCGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
11750089 CCTAAGTCAACCTATGAAATGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGGGGGATGCACAAGC
324 CCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGC
* * * * * * *
11750154 CGAGGATCGGCCCGGTCCCCCTCTACGTGTTGTCGATCCTGCTACCGCAACCCTCGGT-TCGGTC
389 CGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCT-GGTC
* * * *
11750218 TGATCTTAGACTTGCAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGCGGGC-GG
453 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* ** * *
11750282 C---CACTACGCCGGCCTGAGAGATAGGCTGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGT
518 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
11750344 TTGGGCACATCTTCATATTTCTGCATGCCAAAGCCATTTTCAAT-GCATGTAAATTCATACAATG
583 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT-TATGGCTTGTAAATTCATACAATG
* *
11750408 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTT
647 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** * * *
11750473 AAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAATCTTGGT
712 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* ** *
11750538 AGACATGATCCTTGTATTTTTGTTGGTGTGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACA
777 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
11750603 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
842 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
11750658 TGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTTGAGGTTTGATGAG
1 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
11750723 GGATAGGGGACCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCT
66 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CGCAC-CCCCC-
* * ** *
11750788 CGG-CCCCCTGATCGTCGGAACCCCAATGCCACCGATCAGGTTCT-C--CGA-----CG--G-TG
128 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* ** * *
11750841 GTGCCCCGGTGAAGAAAAATATGGCACCAACACTTGCCCGAGCCCAGCATGTGCTGTCGCAACCC
193 GTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
*
11750906 TCGATCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTA
258 TCGGTCTGATCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTA
* * *
11750971 TGCCTAAGTAAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
322 TGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAA
* * * * * *
11751036 GCCGAGGATCGGTCGGGTCCCCGTATGCGTGCTACCAATCCTGCTGCTGTAACCCTCGATCTGGT
387 GCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCTGGT
* *
11751101 CTAAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
452 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
** * * *
11751166 GTAGGCACTACGCCGGCCAAAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
517 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
11751231 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATG
582 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
11751296 GTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTT
647 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
11751361 GAAATTTTTTGTC-GTTTGGGATTTGTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
712 GAAACTTTTTG-CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
*
11751425 TAGACGTGTTCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTAC
776 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
11751489 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTAC
841 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
11751545 TAGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
1 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
11751610 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCC
66 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CGCAC-CCCCCC
* * * *
11751675 GACCCCCCCTATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACAATGG
129 GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * * * *
11751740 TACCCCGACAAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCGTGTGCTGCCGCAA-CC-
194 TGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
**
11751803 C--TC-GATCC-AGTC-----C---G-AT---CT--TA----T--ACTGGGAATGAACTTTGTAT
259 CGGTCTGATCCGA-TCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
11751844 GCGTAAGTCAACCCATAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
323 GCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG
* * * * * * * * *
11751909 CCGGGGATCGGCCGGGTCCCCCTCTGAGTGCTGCCAATCCTGCTGCCACAAACCTCAATCCGGTT
388 CCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCTGGTC
* * *
11751974 TGATCTTAGACAGGGAATGAATTCCGTATGCCTAAGGCAACCGACGAAACGAGCGGGCGGGCGGG
453 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* *
11752039 CGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
518 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
11752104 TTTGGCACATCTTCATATTTCTACAAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGG
583 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
11752169 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTAG
648 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
11752234 AAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCC-AACTTGGT
713 AAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
11752298 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAATTGTACA
777 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
11752363 AGATTTTGTAACCATTTGAAAAATGTGTCCCTATTTCAGACACTTTAATTGCTAC
842 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
11752418 TGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAG
1 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
11752483 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT-GCACCCCCTCGG
66 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCGCACCCCCCCGG
* * **
11752547 CCCCCCCGAAT-GCCGGAACCCCAGTGCC-TCGGTTAGGTTCTCCGACGATGCTCCGGTGATGGT
131 CCCCCCCG-ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* * * *
11752610 GCCCCGGTGAAGAAAAATGCGGCACCAACACTTGCTCGAGCCCAGCATGTGCTGTCGCAACCCTC
195 GCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
11752675 -GTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
260 GGTCTGATCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
11752739 CCTAAGTCAACCCACGAAACGAGCGTACGAGTGCTCAACC-GCCAGAGGGGTGGGATGCACAAGC
324 CCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGC
* * * * * *** *
11752803 CGAGGATCGATCGGGTCCCCGTCTGTGTGCTACCGATCTTGCTATTGCAACCCTCGATCCGGTCT
389 CGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCTGGTCT
* * * * * *
11752868 AAACTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCAGGC
454 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * *
11752933 AGGCACTACACCGG-CTGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
519 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* ** * *
11752997 TAGGCACATCTTCATATTTTTGTGTTCCAATGTCATTTTTATGGCTTGTAAATTCATACAATGGT
584 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
11753062 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCAGGATTTTTGA
649 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * *
11753127 AATTTTTTGCAGTTCGGGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACTTGGTAG
714 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
11753192 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAGTTCAGCTAAAAACTCGAAGTGTACAAG
779 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
11753257 ATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAAT-GCTAC
844 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
11753309 TGGCAACAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
1 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
11753374 GGATAGGTGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCC
66 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CGCAC-CCCCCC
* ** * *
11753439 GGCCCCTCCGATCGTTGCAACCCCAATGCCGTCGGTTAGGTTCTCCGACGA---T--G--G-T-G
129 GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
** *
11753495 -G-CCC-GTAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
194 TGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
11753557 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTAT
259 CGGTCTGATCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
11753622 GCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAG
323 GCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG
* * *
11753687 CC-AGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGTTGCCGTAACCCTC-AGTCTGG
388 CCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGA-TCTGG
* *
11753750 T-TCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGC
451 TCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * *
11753814 GGGTGGGCGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTA
515 ----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
11753879 GGTGGGTTTAGGCACATCTTAATATTTCTGCATGCCAGTGCCATTTTTATGGCTTGTAAATTCAT
576 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
11753944 ACAATGGTCCCTTAAGCCTTCATGAGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCACG
641 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
11754009 ATTTTTAAAACTTTTTACGGTTCGAGATTCTTTAAAATTTTTTC-GAATGGAGTTTTGGCCCCAA
706 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAA
* *
11754073 ACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
770 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
11754138 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
835 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
11754200 TGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
1 TGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
11754265 GGGATAGGGGGCTAATATAAGGGCCAAGTAGCAGCACTCATCGCACATCATGTGCGCACAACCCC
65 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CGCAC--CCCC
* * * * *
11754330 CCGGCCCCCCCGATCGTCGGAACCCTAATGCCG-CTAGTCAGGTTCTCCGACGATGCTCTGGCGA
127 CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGA
* * * * *
11754394 TGGTGCCCTGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAAC
191 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
11754459 CCTCGGTCTG----G-TC-----C---G-AT---CT--TA-G----G-CTGGGAATGAACTCCGT
256 CCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGT
* * * ** *
11754499 ATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCA
321 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACA
* * * * * * *
11754564 AGCCGGGGATAGGTCGGGTCCCCTTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTTGGTAC-G
386 AGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGAT-CTG
* * * * *
11754628 GTCCGATCTTAGACTGGGTATGAACTTCGTATGCCTAAGCCAACCGATGAAACGA----GCGGAC
450 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * *
11754689 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAACCGTGGGTCGATAGGGTGGTAGGCG
515 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
11754754 GGTTTGGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
580 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
11754819 TGGTCCTTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
645 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** **
11754884 TCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
710 TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
11754949 GTAGACGTGATCCTTGTATTTTTTTTGGTATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
775 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
11755014 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
840 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
11755071 TGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAA--GCGCGT--G-TCTCGAGGTTTGATGAG
1 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
11755131 GGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGTGCAAACCCCCC
66 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CGC--A-CCCCC
* * * * * * * ** *
11755196 CCGACCGCCTCGATCGCCGGAAACTCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCC-AGTGA
127 CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGA
* * * * *
11755260 TGGTGCCTCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
191 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* ** * * * * * *
11755325 CTTCAATCCGGTCCGATCCTAGACTGGGATTGAACTTCCTATGCTTAGACTGGGAATGAGCGCCG
256 CCTCGGTCTGATCCGATCTTAGACTGGGAATGAAC-TCCTATGCTTAGACTGGGAATGAACTCCG
* * * **
11755390 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGGTCAGCTGGCCAAAGGGGTTGGATGCAC
320 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCAC
* * * * * * ** * *
11755455 AAGCCGGGGATCGATCGGGTCCCCCTCTTCGTGCTGTCGATCTTGCTGTCATAACCTTC-AGTAT
385 AAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGA-TCT
** *
11755519 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCAACCGACGAAACGAGCGGGGCGG
449 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGGCGG
* * * * *
11755584 GCGGGTGGGCACTAAGCCGACCAGAGAGACGGGATGCGCAAG-CTTGGATTGATAGGGTGGTAGG
513 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
11755648 TGGGTTTAGGCACATCTTCATATTTTTGCACGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
578 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
11755713 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCACGAT
643 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * * * * *
11755778 TTTCAAAACTTTTTACGGTTTGAGA-TTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAAACA
708 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * * *
11755842 TAGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCTAAGTG
773 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
11755907 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTTC
838 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
11755966 AGGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCAAGGTTTGATGAG
1 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
11756031 GGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCACCGCACATCATGCGCGCACACCCCCC
66 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG-TCG--CACCCCCC
* * * *
11756096 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTTCGACGATGCTCCGAAGATG
128 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* * * * * * * *
11756161 GTGGCTCGGCGAAGCAAAACGCAGCACCAGCACATGCTCAAGCCCAGCATGTGCTGCCGCAACCC
193 GTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * *
11756226 TCAGTCT-AGTCAGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
258 TCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGT
* * * *
11756290 ATGCCTAAGTCAACGCATGGAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGCGGGATGCATA
321 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACA
** *** * * *
11756354 AGCCGAGGATAAGTCGGGTCCCCCTCCATGTGCTACCGATCCTG-TGGCTGCAA-CCTACGGTCT
386 AGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-GCCGCAACCCT-CGATCT
* *
11756417 GGTAC-AATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGG
449 GGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * *
11756477 GCAGGCGGGCACTACGTCGGCCAGAGAGACGGGACGCGCAAGCCGTGGATCGATATGGTGGTAGG
513 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
11756542 TGGGTTTAGGCACATTTTCATATTTCTGCATGCCAATGCCATGTTTATGGCTTGTAAATTCATAC
578 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
11756607 AATGGTCCCTTAAGCCTTCAC-TGAAGTTTCATGGC-A-A-GA--CG-------------AC---
643 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
11756650 TTTTGAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGACCCAAACT
708 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
11756715 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAATTG
773 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
11756780 TACAAAATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTAC
838 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
11756838 TGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAG
1 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*** * *
11756903 GGATAGGGGGCCAATATAAGGGCCAAGTACCAATGCCTATCGTACATCATGTGCGCATCCCCCCC
66 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CGCA--CCCCCC
** ** * * *
11756968 CGGTGCCCCCGATCATCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAACGATG
128 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATG
** * *
11757033 GTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
193 GTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
*
11757098 TCGGTCT-A----ATC-----C-------G-------AT-CTTAGACTGGGAATGAACTCTGTAT
258 TCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
11757138 GCCTAAGTCAACCCAAGAAACGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGCTGGATGCGCAAG
323 GCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG
* * * * * * * * *
11757203 CTGAGGATCGGTTGGGTCCCCCACTGCATGCTGTCGAACCTGCTACCGCAACCCTCGGTTTGGTC
388 CCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCTGGTC
* *
11757268 TGATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
453 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* *
11757333 CGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
518 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
11757398 TTAGGCACTTCTTCACATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGG
583 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
11757463 TCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCATTTTCTATTTTTCTCGATTTTTG
648 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** **
11757528 AAACTTTTTGCAGTTCGGGATTTGCTAAAATTTTTTTAGAAGGAGTTTTGGCCC
713 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
11757582 AATGGGGTGT
Statistics
Matches: 8300, Mismatches: 961, Indels: 589
0.84 0.10 0.06
Matches are distributed among these distances:
846 68 0.01
847 106 0.01
848 5 0.00
850 189 0.02
851 239 0.03
852 13 0.00
853 5 0.00
854 1 0.00
855 3 0.00
856 2 0.00
857 1 0.00
858 60 0.01
859 5 0.00
860 2 0.00
861 41 0.00
862 4 0.00
863 2 0.00
864 1 0.00
865 67 0.01
866 119 0.01
867 103 0.01
868 399 0.05
869 520 0.06
870 155 0.02
871 430 0.05
872 707 0.09
873 404 0.05
874 3 0.00
875 403 0.05
876 14 0.00
877 4 0.00
878 3 0.00
879 179 0.02
880 6 0.00
881 3 0.00
882 40 0.00
883 59 0.01
884 295 0.04
885 137 0.02
886 5 0.00
887 247 0.03
888 271 0.03
889 20 0.00
890 334 0.04
891 183 0.02
892 554 0.07
893 313 0.04
894 183 0.02
895 208 0.03
896 165 0.02
897 57 0.01
898 163 0.02
899 210 0.03
900 70 0.01
901 4 0.00
902 3 0.00
903 1 0.00
904 2 0.00
905 62 0.01
906 24 0.00
908 7 0.00
909 133 0.02
910 162 0.02
911 14 0.00
912 108 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCGCACCCCCCCGG
CCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
CCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
GTCTGATCCGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCG
AGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
Found at i:11753607 original size:26 final size:26
Alignment explanation
Indices: 11753571--11753623 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11753561 CTGGTCTGAT
11753571 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11753597 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11753623 C
1 C
11753624 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11756277 original size:26 final size:26
Alignment explanation
Indices: 11756241--11756293 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11756231 CTAGTCAGAT
*
11756241 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11756267 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11756293 C
1 C
11756294 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11758717 original size:26 final size:26
Alignment explanation
Indices: 11758688--11758740 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11758678 CCGGTTCGAT
11758688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11758714 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11758740 C
1 C
11758741 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11759622 original size:26 final size:26
Alignment explanation
Indices: 11759593--11759644 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11759583 CCAATCCGAT
*
11759593 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11759619 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11759645 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11760280 original size:906 final size:905
Alignment explanation
Indices: 11757821--11764128 Score: 8736
Period size: 904 Copynumber: 7.0 Consensus size: 905
11757811 CCGATCTAAT
* * * * ** **
11757821 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
** ** * *
11757886 CGGCCAGAGGCACGGGATGCGCAAGCCGGGGATC-AGCCAAGTACCCC-TCTACGTGCTGCCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGT-CCCCTTCTGCATGCTGCCGAT
* * * ** * *
11757949 CCTACTACC-CAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTTAGCC
129 CCTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
11758013 AACCGACGAAATG-A-------GCGGGCGGGCGGGCACTATGCCAGCCATAGAGACGGGATGCGC
194 AATCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
11758070 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-CACGTGCCAAT
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-C-TGCCAAT
* *
11758133 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGACA
322 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
11758198 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-TCTTTGCGGTTTGAGATTTTTTAAAATT
387 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATT
* * * * * *
11758262 TTTTCGAAAGCAGTTTTGGCCCAAAACGTGGTAGACCTGATCCTTGTATTTTTTTTGGCATGCAC
452 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
**
11758327 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCAACCATTTGAAAAAAGTGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
11758392 TTCCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
11758457 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGC
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
11758522 ACATCATGTGCGCACACCCT--TCGGCCCCTCCGATCGTCAGAACCCCAATGCCGTCGGT-AAGG
712 ACATCATGTGCGCACACCCTCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAA-G
** ** * ** *
11758584 TTCTCCAACGATGCTCCAATGATTGTGCCCCGGGGAAGAAAAATGTGACACCAACACATGCCCGA
776 TTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGA
* * * * * *
11758649 GCCAAGCATTTACTGACGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
841 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
11758714 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * ** * * * * *
11758779 CGGCCAGAGGGGCGGGATGCGTAAGCTGGGGATCGGCCGACTCCCCCTCTCCAAGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTTCTGCATGCTGCCGATCC
* * * *
11758844 TACTACCGCAACCCTCGGTCTGG-CTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAA
131 TGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
11758908 -CTA--ACAA--AATGAGCGGGCGGGTGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCA
196 TCGACGA-AACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
11758968 AGCCGTGTATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGTGTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCC
* *
11759033 ATTTTTATCGCTTGTAAATTCATACAATGGTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * * *
11759098 CGACTCGTTTTCTATTTTTCATTATTCTTGAAACTTTTTTGTGGTTCGGGATTTTTTAAAATTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTGCGGTTTGGGATTTTTTAAAATTTT
* *
11759163 TTCGGGAAGGTAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCAT
454 TTC-GGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-
* * ** * *
11759228 AAAAAAAATTCAGCCAAAAACTTAAAGTGTACAAGATTTTGGGACCATTTAAAAAAAGTGTCCCC
516 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
11759293 ATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGT
581 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
11759358 GTGTGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCG
646 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
11759423 CACATCATGTGCGCACGCCACTCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTTGGTCAA
711 CACATCATGTGCGCACACC-CTCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAA
* * *
11759488 GTTTTCCGGGGATGCTCCGGTGATGGTGCCCTGACGAAGAAAAATGTGGCACCAACACATGCCCG
775 GTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCG
** ** *
11759553 AGCCCAGCATGTGCTGCCGCAACCCTCATTCCAATCCGATCTTAGATTGGGAATGAACTCCGTAT
840 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
11759618 G
905 G
* * * * *
11759619 CTTAGACTGGGAGTGAACTCCGTATGACTAAGTCAAACCACGAAATGAGGGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
11759684 CAGCTAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTTCTGCATGCTGCCGATCC
**
11759749 TGCTGCCGTAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
11759814 TCGACGAAACGAACGGGTGGGCAGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
196 TCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
11759879 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCA
*
11759944 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
11760009 GACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT
* * *
11760074 CGGAAGGTGTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAA
456 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
11760139 AAATTCAGATAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
11760204 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
586 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
11760269 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACAT
651 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
11760334 CATGTGCGCACGCCACTCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTTGGTCAAGTTTT
716 CATGTGCGCACACC-CTCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAGTTCT
* *
11760399 CCGGGGATGCTCCGGTGATGGTGCCCTGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCC
780 CCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCC
** ** *
11760464 AGCATGTGCTGCCGCAACCCTCATTCCAATCCGATCTTAGATTGGGAATGAACTCCGTATG
845 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
11760525 CTTAGACTGGGAGTGAACTCCGTATGACTAAGTCAAACCACGAAATGAGGGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
11760590 CAGCTAGAGGGGCGAGATGCGCAAGTCGGGGATCGATCGGGTCCCCTTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTTCTGCATGCTGCCGATCC
**
11760655 TGCTGCCGTAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
11760720 TCGACGAAACGAACGGGTGGGCAGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
196 TCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
11760785 GCCGAGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCA
* *
11760850 TTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
11760915 GGCTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGTTTTGGGGATTTTTTAAAATTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT-GGGATTTTTTAAAATTTTT
* * *
11760980 TCGGAAGGAGTTTTAGCCCCAATA-TTGTTTGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
455 TCGGAAGGAGTTTTGGCCCCAA-ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
11761044 AAAAATTCAGCTAAAAAGTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
11761109 TTAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
11761174 AGTTTTGGACGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCAACGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * **
11761239 ATCATTTGCGCACACCCT--CCGGCCCCCCCGATCGCCGAAACCCCAATGCCACCGGTCAAGTTC
714 ATCATGTGCGCACACCCTCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAGTTC
* * * * *
11761302 TCCGACGATGCTCCGGTGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAACACGTGCCCGAGCC
779 TCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCC
* * *
11761367 CAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATG
844 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
11761429 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACCCATGAAACGAGCATGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * ** *
11761494 CGGCCAGAAGGGCGGGATGCACAAGTCGGGGATCGACCGGGTTCCCC-TCTGTGTGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGG-TCCCCTTCTGCATGCTGCCGATC
* * ** *
11761558 CTGCTACCATAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
11761623 ACCAACGAAACG-A---GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
195 ATCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
11761684 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCC
11761749 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *** *
11761814 CGACTCATTTTTTATTTTTCATGATTTTTGAAAC-TTTTGACGGTTCAAGATTTTTTTAAATTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-CGGTTTGGGATTTTTTAAAATTTT
* *** *
11761878 TTTGGAAGGAGTTTTTAACCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
11761943 AACAATTCAGCTAAAAACTCGTAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
11762008 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
11762073 AGTTCTGGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * * *
11762138 ATCATGTGCGTACA---------ACCCCCCCGACCGCCAGAA-CCCAATTACTGTCGGGCAGGTT
714 ATCATGTGCGCACACCCTCCCCGGCCCCCCCGATCGCCGGAACCCCAA-TGCCGTCGGTCAAGTT
** * * * *
11762193 CTCCGGCGATGCTCCGGCAATGGTGGCCCGATGAAGAAAAATGCGGCACCAACACATGCCTGAGC
778 CTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGC
* * ** * *
11762258 CCAGCATGTTCTGCCGCAACCCTCGGTCTGGTTGGATCTTCGACTGGGAATGAACTCCATATG
843 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
11762321 CTTAGACTGGGAATGAGCTCCATATGCCAAAATCAACCCTCGAAACAAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * * * *
11762386 CGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGACTGAGTCCCCCTCTGCGTGCTACTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTTCTGCATGCTGCCGATCC
* * * *
11762451 TGCTGCTGCT-ACCCTCGGTCAGGTATGATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCA
131 TGCTGCCG-TAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
11762515 ACCGACAAAACGAGCGGGCGGGCGGGGGGGCGGGCACTACGTCGGCCAGAGGGATGGGATGCGCA
195 ATCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
11762580 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCC
*
11762645 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
11762710 CGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
* * * *
11762775 TCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCATAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
11762840 AAAATTCAGATAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
11762905 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
11762970 GATCTCGAGGTTTGATGAGGGATAGGGGGGCCAACATAAGAGCCAAGTACCAGCACCCATCGCAC
650 GTTCTCGAGGTTTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * * * *
11763035 ATCATGTGCGCACACCC-CCCCGACCCCTTCGAT-GTCGGAACCCCAGTACCGTCGATCAGGTTC
714 ATCATGTGCGCACACCCTCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAGTTC
* * * * *
11763098 TCTGACGATGCCCCGGTGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAACACATGCCCAAGCC
779 TCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCC
* * * * * **
11763163 TAGCATATGCTACTGCATCCCTCGGTCAAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
844 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
11763225 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * *
11763290 CGGTCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGCCAGGTCCCCTTCCGCATGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTTCTGCATGCTGCCGATCC
* * * * * *
11763355 TACTGCCGGAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGGCAA
131 TGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
11763420 TCGATGAAACGAGCAGGCAGGCGGGCGCGCGGGTACTACGCCGGCGAGAGAGACGGGATGCGCAA
196 TCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
11763485 GTCATGGATCGATAGGATGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCA
* * * * *
11763550 CTTTTATGGCCTGAAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCACGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
11763615 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTAGGATTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT
**
11763680 CGGAAACAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
456 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
11763745 CAATTTAGCTAAACACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAATGTTCCCATTT
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTT
** *
11763810 CAGACACTTTAACAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
11763875 GTTCTTGAGGTTTGATGAGGGATTGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** *
11763940 TCATGTGTG--CACCC-CCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCACCGATCAAGTTCT
715 TCATGTGCGCACACCCTCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAGTTCT
* * * * *
11764002 CCGGTGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCAGC-TGCCCGAGCC
780 CCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACA-CATGCCCGAGCC
* * *
11764066 CAGCATGTGCTACCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
844 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
11764128 C
1 C
11764129 CTATGTCAAC
Statistics
Matches: 4846, Mismatches: 513, Indels: 102
0.89 0.09 0.02
Matches are distributed among these distances:
890 2 0.00
891 12 0.00
892 306 0.06
893 150 0.03
894 13 0.00
896 423 0.09
897 243 0.05
898 2 0.00
899 300 0.06
900 208 0.04
901 48 0.01
902 217 0.04
903 134 0.03
904 991 0.20
905 386 0.08
906 848 0.17
907 323 0.07
908 9 0.00
909 32 0.01
910 199 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (905 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTTCTGCATGCTGCCGATCC
TGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
TCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCTCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAGTTCTC
CGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCA
GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:11760528 original size:26 final size:26
Alignment explanation
Indices: 11760499--11760550 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11760489 CCAATCCGAT
*
11760499 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11760525 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11760551 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11761432 original size:26 final size:26
Alignment explanation
Indices: 11761403--11761455 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11761393 CCGGTCCAAT
*
11761403 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11761429 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11761455 C
1 C
11761456 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11763228 original size:26 final size:26
Alignment explanation
Indices: 11763199--11763251 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11763189 CAAGTCCGAT
11763199 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11763225 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11763251 C
1 C
11763252 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11764572 original size:26 final size:26
Alignment explanation
Indices: 11764543--11764596 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
11764533 TGTCCGATCA
11764543 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
11764569 TAGATTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
11764595 TA
1 TA
11764597 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:11766308 original size:26 final size:26
Alignment explanation
Indices: 11766270--11766322 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11766260 TCTGATCGAT
11766270 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
11766296 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11766322 C
1 C
11766323 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11767372 original size:26 final size:26
Alignment explanation
Indices: 11767322--11767374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11767312 TTGGTCCGAT
*
11767322 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
11767348 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
11767374 C
1 C
11767375 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:11767446 original size:185 final size:185
Alignment explanation
Indices: 11767129--11767484 Score: 577
Period size: 185 Copynumber: 1.9 Consensus size: 185
11767119 CCCTCGGTCC
*
11767129 GGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATACCTAA
1 GGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTATGTATACCTAA
* * * *
11767194 GTTAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGG
66 GTCAACCCACGAAACGAGCGTACGGGCGATCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGG
* * *
11767259 ATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTATCACAACACTCGGTTT
131 ATCGATCGGGTCCCCCTCTGCATGCTATCGATCCTACTATCACAACACTCGGTTT
* * *
11767314 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTATGTATGCCTAA
1 GGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTATGTATACCTAA
* * * *
11767379 GTCAACCCACGAAATGAGCGTGCGGGCGATCAACCGGCCAGAGGGGCGGGATGCGCAAGCTGGGG
66 GTCAACCCACGAAACGAGCGTACGGGCGATCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGG
11767444 ATCGATCGGGTCCCCCTCTGCATGCTATCGATCCTACTATC
131 ATCGATCGGGTCCCCCTCTGCATGCTATCGATCCTACTATC
11767485 GTAACCCTTG
Statistics
Matches: 156, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
185 156 1.00
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.21
Consensus pattern (185 bp):
GGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTATGTATACCTAA
GTCAACCCACGAAACGAGCGTACGGGCGATCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGG
ATCGATCGGGTCCCCCTCTGCATGCTATCGATCCTACTATCACAACACTCGGTTT
Found at i:11767510 original size:185 final size:185
Alignment explanation
Indices: 11767131--11767526 Score: 567
Period size: 185 Copynumber: 2.1 Consensus size: 185
11767121 CTCGGTCCGG
* *
11767131 TCCGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATACCTAAGT
1 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTATGTATACCTAAGT
* * * *
11767196 TAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGAT
66 CAACCCACGAAACGAGCGTACGGGCGATCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * ** *
11767261 CGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTATCACAACACTCGGTTTGG
131 CGATCGGGTCCCCCTCTGCATGCTATCGATCCTACTATCACAACACTCGGTAAGA
* *
11767316 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTATGTATGCCTAAGT
1 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTATGTATACCTAAGT
* * * *
11767381 CAACCCACGAAATGAGCGTGCGGGCGATCAACCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGAT
66 CAACCCACGAAACGAGCGTACGGGCGATCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * *
11767446 CGATCGGGTCCCCCTCTGCATGCTATCGATCCTACTATCGTAACCCTTGGTAAGA
131 CGATCGGGTCCCCCTCTGCATGCTATCGATCCTACTATCACAACACTCGGTAAGA
** *
11767501 TTGGATCTTAGACTGGGAACGAACTC
1 TCCGATCTTAGACTGGGAATGAACTC
11767527 TTTATGCCTA
Statistics
Matches: 186, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
185 186 1.00
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.22
Consensus pattern (185 bp):
TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTATGTATACCTAAGT
CAACCCACGAAACGAGCGTACGGGCGATCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGAT
CGATCGGGTCCCCCTCTGCATGCTATCGATCCTACTATCACAACACTCGGTAAGA
Found at i:11768264 original size:26 final size:26
Alignment explanation
Indices: 11768228--11768280 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11768218 CCAGTCTGAT
11768228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11768254 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11768280 C
1 C
11768281 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11770699 original size:26 final size:26
Alignment explanation
Indices: 11770663--11770741 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
11770653 CCGATCCGAT
* * **
11770663 CTTAGACTGGGATTGATCTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11770689 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11770715 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11770741 C
1 C
11770742 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11771612 original size:26 final size:27
Alignment explanation
Indices: 11771576--11771633 Score: 109
Period size: 26 Copynumber: 2.2 Consensus size: 27
11771566 TCGATCTGAT
11771576 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
11771602 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
11771629 CTTAG
1 CTTAG
11771634 TCAACCCACG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 26 0.84
27 5 0.16
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:11772504 original size:26 final size:26
Alignment explanation
Indices: 11772475--11772525 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11772465 CGATCCAATC
11772475 TTAGACT-GCGAATGAACTCCGTATGG
1 TTAGACTAG-GAATGAACTCCGTATGG
11772501 TTAGACTAGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
11772526 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:11773419 original size:25 final size:26
Alignment explanation
Indices: 11773378--11773427 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
11773368 CTTTTCCGAT
*
11773378 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
11773404 CTTAGA-TGGCAATGAACTTCGTAT
1 CTTAGACTGGCAATGAACTCCGTAT
11773428 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:11773893 original size:899 final size:897
Alignment explanation
Indices: 11769936--11776989 Score: 8629
Period size: 898 Copynumber: 7.8 Consensus size: 897
11769926 TGTGCTACTG
* * * * * *
11769936 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACTGACGAA
1 CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * * * * * ** * * *
11770001 ACGAATGTGCTGGCGGGTGGGCACTACACTGGCCAGAGAGATAGGATACACATGCCGTGGATCGA
66 AC-AACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * ** *
11770066 TATGGTGGTAGGTGGGTATAGACACATCTTCATATTTCTTAATGCCAAAGCCATTTTTATGGCTT
130 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * * *
11770131 GTAAATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTTT
195 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
* ** *
11770196 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAAAAGGATTTT
260 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
11770261 TGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTTA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
11770326 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCTCATTTCAGACACTTTAAT
390 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
11770391 GGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTT
*
11770456 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG--CA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * *
11770519 -----C-ACCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTTAGGTTCTCCGGCGATGCTTCG-
585 CCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
* ** * * * * *
11770577 GCGATGGTGCCCCAACGAAGAAAAATATGGCACCAGCACATTCCCGAGCCTAGCATGTGCAGCTG
650 G-GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCG
11770642 CAACCCTCGGTCCGATCCGATCTTAGACTGGGATTGATCTTTGTATGCTTAGACTGGGAATGAAC
714 CAACCCTCGGT-C--T--GA---T---C----------C---G-AT-CTTAGACTGGGAATGAAC
*
11770707 TCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGG
753 TCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
* * * * * * ***
11770772 CGCTCAACCGGCCAGAGTGGCGAGATGCGCAAGTCGGGGATCGATCGAGTCCACCTCTATGTGCT
817 CGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCT
* * * *
11770837 GTCTATCCTACTA--T
882 GCCGATCCTGCTACCA
* * *
11770851 CGACCCTC-GATCCGGT-CTATCTTAGACTAGGAATGAA-TCCGTATTGCACTAAGCCAA-C---
1 CAACCCTCAG-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTA-TGC-CTAAGCCAACCGAT
* * * *
11770909 G--ACAACG-GCGGGTGGGCGCGGGACTACGTCGG-CAGAGAG-CGGGATGCGCAAGCCGTTGAT
63 GAAACAACGAGCGGGCGGGCG-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
11770969 CGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCGTGCCAATGCCATTTTTGTGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
11771034 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
** ** ** *
11771099 TCTATTTTTCACGATTTTCAAAACTTTTTGGGGTTTAGGATTTCTTAAAATTTTTTCGGAAGGAG
257 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* ** * * * * *
11771164 CTTCAGCCCTAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTTCAGA
322 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * * *
11771229 TTAAAACACGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCTCATTTCAGACATTTT
387 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
11771294 AATGGCTACTGGCAGCAAACATATAAAATCTCAAATGCTCTTTAATGGGGG-GTGAGTTCTCGAG
452 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGCGAGTTCTCGAG
** *
11771358 GTTTGATGAGGGATAGGGCACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCA
516 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
11771423 CACACCCCCC-AGCCCCCCGATTGCCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGACGATGC
581 CACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGC
* * * * *
11771486 TCCGACGATGGTGCCCCGATGAAGAAAAAGGTGGCACCAACACATGCCTGAGCCCAGCATGTGCT
645 TCCGAGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT
* *
11771551 GCCGTAACCCTCGGT-TCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
710 GCCGCAACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAA
* * * * *
11771615 TGAACTCCGTATGCCTTAGTCAACCCACGTAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGT
773 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
** * * * *
11771680 GGGATGCGTAAACCGAGGATCGGTCGGGTCCCCCTCTGCATGCTGCTGATCCTGTTACCA
838 GGGATGCGTAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCA
*** * **
11771740 CAACCCTCAGTCCGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAA
1 CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * * * * *
11771805 ACGAGCGGGCGTGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACACGCCGTGGATCAA
66 AC-AACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* ** *
11771870 TAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGTGTGCTAATGCCATTTTTATGGCTT
130 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * * **
11771935 GTAAATTCATACAATGGTCCTTTAAGACTTCACATGAAGTTTCATGGCAAGATAACTCATTTT-T
195 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
* * * *** *
11771999 CATTTTTCACAATTTTTGAAACTTTCTACGGTTCGGGATTTTTAAAAAAAATTTCGGATGGAGTT
260 -ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
11772064 TTAGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
324 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
11772129 AAAACTCGAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
389 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
11772194 TGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTTGAGGTT
454 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTT
* * *
11772259 TGATAAGGGATAGAGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
519 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * *
11772324 ACCCCCCGGCCCCCCCAATCATCGAAACCCCAACGCCGTCGGTCAGGTTCTCC-AGCGATGCTCC
584 ACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGATGCTCC
* * * * * *
11772388 GATGATGGTGCCTCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-AC
648 GAGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCC
** * * * * *
11772452 AAAACCCTTGGTCCGATCCAATCTTAGACTGCGAATGAACTCCGTATGGTTAGACTAGGAATGAA
713 GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAA
* *
11772517 CTCCGTATGCCTAAGTCAACCCACGAAACT-AGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGG
777 CTCCGTATGCCTAAGTCAACCCACGAAA-TGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * **
11772581 ATGCGTAAATCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCTG
841 ATGCGTAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCA
* *
11772638 TAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * *
11772703 ACAAGTGGGCGGGCAGGCAGGCGGGCACTACGCCGGCCAGAGAGACGTGATGCGCAAGCCGTGGA
66 ACAA-CGAGCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
11772768 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-AGTGCCAATACCATTTTTAT
126 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTAT
*
11772832 GGCTTGTAAATTTC-TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
190 GGCTTGTAAA-TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
* * ** * *
11772896 TTTTCTATTTTTCACGATTTTTGAAACTTTATACGGATAAGGATTTTTTAAAACTTTTTCGGTAG
254 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* *
11772961 GAGTTTTAGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
319 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
11773026 AGCTAAAAACTCAAAGTGTA-AATGATTTTGCGACCATTTGAAAAAAGTGTCCCCA-TTCTAGAC
384 AGCTAAAAACTCGAAGTGTACAA-GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGAC
11773089 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCT
447 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCT
* * *
11773154 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACAAGCACCCATTGCACATCATG
512 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * ** * *
11773219 CGCGGACACCCCCCCGACCCCCCCGATCACCGGAACCCTAATGCCGTCGATCAGGTTCTCCGACG
577 TGCGCACA-CCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * * *
11773284 ATGCTCCGAGGATGTTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATG
641 ATGCTCCGAGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
**
11773349 TGCTGCCGCAACCCTCGGTCTTTTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TGG
706 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
11773413 CAATGAACTTCGTATTCCTAAGTCAACCCATGAAATGAACGTGCGGGCGCTCAGCCGACCGGAGG
771 -AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* ** * ** * *
11773478 GGCGGGATGCGTAAGCCGGGGATCGGCCAGGTCCCCCTCTGTGTACTGCTGATCCTGCTACCA
835 GGCGGGATGCGTAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCA
* * * ** *
11773541 CAACCCTCAATCTGGTACAATCTTAGACTGGGAATGAACTTTGTATGCTTAAGCCAACCGATGAA
1 CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * *
11773606 ACAAGCGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGTGCAAGTCGTGGATCGA
66 ACAA-CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
11773671 TAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
130 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
*
11773736 GTAAATTCATACAATGGTCCCTTAAGCCTTCCCGTGAAGTTTCATGGCAAGACGACTCATTTTCT
195 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
* *
11773801 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATATTTTAAAACTTTTTCGGAAGGAGTTT
260 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
**
11773866 TGGCCCCAAACTTCTTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
11773930 AAACTCGAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
390 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * **
11773995 TGCTACTGGCAGCAAACCTATAAAATCTCAAATGCACTTTAAGGGGGTGCGAGTTCTTAAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTT
* **
11774060 GATAACTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
11774125 CCCCCCGGCCCCCCCGATCGTCGGAA-CCCAACT-CCGCCGGTCAGGTTCTTCGATGATGCTCCG
585 CCCCCCGACCCCCCCGATCGTCGGAACCCCAA-TGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* * * * * * *
11774188 ATGATGGTGCCTCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATATGCTCGAG
649 AGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT---G
* * * * * *
11774253 CCCAGCATGTGCTACAAAACCCTCGGTCCGGTTCAATCTTAGACTGCGAATGAACTCCATATGCT
711 --C--C----G---C--AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * *
11774318 TAGACTAGGAATGAACTTCGTATGCCTAAGTCCACCCATGAAATGAGCGTACAGGCGCTCAGCCA
763 TAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
* * * * *
11774383 GCCAGAGGGGTGGGATGCGTAAATCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCAATCCTG
827 GCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTG
*
11774448 CTACGTCG
892 CTAC--CA
** * *
11774456 CAACCCTC-GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGG
1 CAACCCTCAG-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * * *** *
11774520 AACGAGCGGGAGGGCGGGCGGGCACTATATCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCG
65 AAC-AACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
11774585 ATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCT
129 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
*
11774650 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
194 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
* * * * * * * *
11774715 CATTTTTCACGATTTTTAAAACGTTTTGCGCTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTT
259 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * *
11774780 TTTGCCCCAAACCTGGTAGACGTGATCATTGAATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
324 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
11774845 AAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
389 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
11774910 TGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
454 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTT
* * *
11774975 TGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTATCAGCACCCATCGCACATCATATGCGCAC
519 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
11775040 ACCCCCACCCGACCCCCCCGATCGTCGGAACCCCAATGCCATCAGTCAGGTTCT-C--CG--G-T
584 A--CCC-CCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * *
11775099 -----GATGGAGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAACATGTGCTA
646 CCGAGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
* * * * * * *
11775159 TCGCAACCGTTGGTCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGAATG
711 CCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATG
* * * * * * *
11775224 AACTCCCTATGCCTAAGTCAACACACAAAACGAGTGTGCGAGTGCTCAGCCGGCCAGAGGGGCGG
775 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * *
11775289 GATGCGCAAGTCGAGGATTGATCGGGTCCCCTTCTGCATGCTGCCAATCCTGCTGCCA
840 GATGCGTAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCA
* * *
11775347 TAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACAGATG--
1 CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * * *
11775410 A-AACGAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCCCAAGCCTTGGATCGAT
66 ACAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*** *
11775474 AGGGTGGTAGGTGGGTTTAGTTGCATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCCTT
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG-CTT
* *
11775539 GTAAATT-ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCT
195 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
** * *
11775603 ATTTTTCACGATTTACGAAACGTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
260 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
** * * * *
11775668 TGGCTGCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAATTTTAGCTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
11775733 AAACTCGAAGTGTACGAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAT
390 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
11775798 GGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTT
* *
11775862 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAGA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *** * * *
11775927 CCCCCTTGGCCACCCCGATCGTCAGAGTGCCAATGCTGCCGGTCAGGTTCTTCGACGATGCTCCG
585 CCCCC-CGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* * * * *
11775992 -GCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCTAGCATGTGCTACT
649 AG-GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCC
* * * * ** *
11776056 GCAAACCTCGGTCCGAGCCGATCTTTGGTTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
713 GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAA
* * **
11776121 CTCCGTATGGCTAAGTCAAACCCACGAAACGAGCGTGCGGGTTCTCAGCCGGCCTAGAGGGGCGG
777 CTCCGTATGCCTAAGTC-AACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCC-AGAGGGGCGG
* * * * * *
11776186 GATGCGCAAGTCAGGGATC-AGCCGGGT-CCCCTCCAGCATGCTACCGATCCTACTACCA
840 GATGCGTAAGTCGGGGATCGA-TCGGGTCCCCCT-CTGCATGCTGCCGATCCTGCTACCA
* *
11776244 CAACCATCAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG--
1 CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * * *
11776307 A-AATGAGCGGGCGGGTGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGAT
66 ACAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
11776371 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAACGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
11776436 TAAA-TAATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCATTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
* ** * *
11776500 TTTTTCACAATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTT
261 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* *
11776565 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAA
326 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
11776630 AAGTCGAAGTGAACAAGATTTTGTGACC-TTCTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
391 AACTCGAAGTGTACAAGATTTTGTGACCATT-TGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
**
11776694 GGCTGTTGGCAGCAAACCTGTAAAATCTCAAATGCTTCTTTAA-GGGGTGCGAGTTTCTCGAGGT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC-TCTTTAAGGGGGTGCGAG-TTCTCGAGGT
* * *
11776758 TTGACGA-GGATA-GGGGCTAATATAA-GG-CAAGTACCAGCACCCATTGCACATTCATGTGCG-
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA-TCATGTGCGC
* * * * * **
11776818 ------CGC-ACCCCTCCTATCGCCGGAACCCTAATGCCGTC-GTCAGGTTCTCCGACGATTATT
582 ACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA-TGCT
* ** *
11776875 CCGACGATGGTG---CGGTGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAG-ATGGTGCT
646 CCGAGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCAT-GTGC-
* ** * * *
11776936 TACCATAACCGTTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
709 TGCCGCAACC-CTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
11776990 CTAAGCCAAT
Statistics
Matches: 5344, Mismatches: 682, Indels: 256
0.85 0.11 0.04
Matches are distributed among these distances:
882 2 0.00
883 42 0.01
884 43 0.01
885 51 0.01
886 114 0.02
887 513 0.10
888 13 0.00
889 25 0.00
890 24 0.00
891 61 0.01
892 1 0.00
893 149 0.03
894 21 0.00
895 143 0.03
896 412 0.08
897 288 0.05
898 869 0.16
899 365 0.07
900 3 0.00
901 7 0.00
902 455 0.09
903 291 0.05
904 47 0.01
905 1 0.00
906 421 0.08
907 21 0.00
908 17 0.00
909 54 0.01
910 1 0.00
911 1 0.00
912 46 0.01
913 223 0.04
914 26 0.00
915 340 0.06
916 208 0.04
917 1 0.00
918 3 0.00
919 24 0.00
920 18 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
ACAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGAG
GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCA
ACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
TAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCA
Found at i:11774260 original size:17 final size:17
Alignment explanation
Indices: 11774220--11774265 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
11774210 AAATGTGGCA
*
11774220 CCAGCACATGCTCGAGC
1 CCAGCATATGCTCGAGC
11774237 CCAGCATATGCTCGAGC
1 CCAGCATATGCTCGAGC
*
11774254 CCAGCATGTGCT
1 CCAGCATATGCT
11774266 ACAAAACCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.22, C:0.37, G:0.24, T:0.17
Consensus pattern (17 bp):
CCAGCATATGCTCGAGC
Found at i:11775212 original size:26 final size:26
Alignment explanation
Indices: 11775183--11775235 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11775173 CCGATCTGAT
*
11775183 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCCTATG
11775209 CTTAGATTGGGAATGAACTCCCTATG
1 CTTAGATTGGGAATGAACTCCCTATG
11775235 C
1 C
11775236 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCCTATG
Found at i:11777725 original size:26 final size:26
Alignment explanation
Indices: 11777681--11777733 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11777671 CTGGTCTGAT
*
11777681 CTTAGACTGGAAATGAACT-TCGTATG
1 CTTAGACTGGAAATAAACTAT-GTATG
*
11777707 CTTAGACTGGGAATAAACTATGTATG
1 CTTAGACTGGAAATAAACTATGTATG
11777733 C
1 C
11777734 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTATGTATG
Found at i:11778630 original size:26 final size:26
Alignment explanation
Indices: 11778579--11778631 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11778569 CTGGTCCAAT
*
11778579 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11778605 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11778631 C
1 C
11778632 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11779418 original size:903 final size:897
Alignment explanation
Indices: 11776960--11779940 Score: 4120
Period size: 898 Copynumber: 3.3 Consensus size: 897
11776950 GGTCTGGTTC
* * *
11776960 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACTAGCGGGCGGGCAGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGC--GC
*
11777025 GGGCGGGAGGGCACTACGCCGGCCAGAGAGACG-GATGCGCAAGCCG-GGATCGATAGGGTGGTA
64 GAGC----GGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
11777088 -GTGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATA
125 GGTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
11777152 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
190 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
11777217 TTTTTGAAACTTTTTGCGGTTTGGAATTTTTTCAAATTTTTTCGGAAA-GAGTTTTGGTCCCAAA
255 TTTTTGAAACTTTTTGAGGTTCGGAATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGG-CCCAAA
* *
11777281 CATGGTAGACGTTATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
318 CTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
11777346 TGTACAAGATTTTGTGACCAATTGAAAAAAATGTCCCCA-TTCTAGACACTTTAATGGCTACTGG
382 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGG
* * *
11777410 CAGCAAACCTGTAAAATTTCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGTGA
446 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
11777475 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG-CA-CACCCCCTG
511 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCACCCCC-G
* * * * * *
11777538 GCCCCCCTGATCG-CTGGAACCCTAATGCCACCGGTCAAGTTCTCCAACGATGATCCGACGATGG
575 GCCCCCC-GATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCTAGCGATGCTCCGACGATGG
* *
11777602 TGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCATAACCCT
638 TGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCT
* * * **
11777667 CGGTCTGGTCTGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGGGAATAAACTATGTAT
703 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTAT
* ** *
11777732 GCCTAAGTCAACCCACGAAACGAGCGCGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
768 GCCTAAGTCAACCCACGAAACAAGCGTACGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAG
* * ** * *
11777797 CCGGGGA-TCGGCCGGG-CCCCATCTACGTGCTGTCGATCCTGCTAC-TGCAACCCTCGGTCCGA
833 CCGGGGATTC-GCCGGGTCCCCCTCTACGTGCTGCCGATCCTATTTCAT--AACCCTCGGTCCGG
11777859 TCT
895 TCT
* * * *
11777862 AATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCTACCGACGAAACGAGCGGGCGGGCG-G-
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGCGA
* * * * *
11777925 GCCGGCACTACGCCGACTAGAGAGACGAGATGCGCAAGCCGTGAATCGATATGGTGGTAGGTGGG
66 GCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT-GG
* *
11777990 TTTAGGCACATCTTCATATTTCTG-AGTGCCAATGCCATTTTTATGGGTTGTAAATTCAAACAAT
130 TTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
11778054 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TAATTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * **
11778118 TCAATACTTTTT-ACGGTTCGGGATTTTTTTAAATTTTTTCAAAAGGAGTTTTATCCCCAAACTT
259 TGAA-ACTTTTTGA-GGTTCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTT-GGCCCAAACTT
* *
11778182 GGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAACTAGAAACTCGAAGTGTA
321 GGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
11778247 CAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCAACTGGCAGCA
386 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * * *
11778312 AACCTGTAAAATCTCATACGCTCTTTAAGGCGGCGTGAGTTCTCGAGGTTTTATGAGGGATAGGG
451 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
11778377 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCC
516 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACCACCCCCGG-CCC
** * * * *
11778441 CCCGATTATCGAAACCCCAATGCCGCCGGTCAGGTTCTCTAGTGATGCTCCGGCGACGGTGCCCC
579 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTAGCGATGCTCCGACGATGGTGCCCC
* * **
11778506 GGTGAAGAAAAATGCAGCACCCA-CACATGCTTGAGCCCAGCATGTGCTGCCAAAACCCTCGGTC
644 GATGAAGAAAAATGCGGCA-CCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCTCGGTC
* *
11778570 TGGTCCAATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
708 TGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
11778635 AGTCAACCCACGAAACAAGCGTACGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
773 AGTCAACCCACGAAACAAGCGTACGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * *
11778700 GATTTGCCGGGTCCCCCTCTACGTGCTGCCCATCCTATTTCATAACCCTCGGTCTGGTCT
838 GATTCGCCGGGTCCCCCTCTACGTGCTGCCGATCCTATTTCATAACCCTCGGTCCGGTCT
* *
11778760 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCAGGCGGGCAGAC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGC-G-C
* *
11778825 GAGCGGGTACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTG
64 GAGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
11778890 CGTTTAGGCTCATCTTCATATTTCTGCACGCCAATGCCATTTTTATGGCTTGTAAATTGATACAA
129 -GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
11778955 TGGTCCCTTACGCCTTCACGTGAAGTTTCGTGGCAAGACGGCTCGTTTTCTATTTTTCACGATTT
193 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
*
11779020 TTGAAACATTTTGAGGTTCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCTAAACTTG
258 TTGAAACTTTTTGAGGTTCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC-AAACTTG
11779085 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AGAGTGT
322 GTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGT
* *
11779149 ACAAGATTTCGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGC
385 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
11779214 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
450 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
11779279 GGG-CAATTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCACCCCCGGTC
515 GGGCCAA-TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACCACCCCCGGCC
* * *
11779343 CCCCGATCGTCGGAACCCCAACGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCT
578 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTAGCGATGCTCCGACGATGGTGCCC
* * * * **
11779408 CGACGAAGAAAAATGCGGCACCAGCACAAGCCCGAACCCAGCATGTGCTGCCACAACCCTCGACC
643 CGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCTCGGTC
*
11779473 TGGTCCGATCTTAGACTGGGAATGAAC-TCGGTATGCTTAGACTGGGTATGAACTCCGTATGCCT
708 TGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
11779537 AAGTCAACCCACGAAACGAA-CGTACGGGTGCTC-ACCGGCTAGAGGGGAGGGATGCGTAAGCCG
772 AAGTCAACCCACGAAAC-AAGCGTACGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * *
11779600 GGGA-TCGACCGGGTCCCCCTCTACGTAG-TACCGATCCTGCTGTCGTAACCCTTGATCCGGCCT
836 GGGATTCG-CCGGGTCCCCCTCTACGT-GCTGCCGATCCT-ATTTCATAACCCTCGGTCCGGTCT
* * * *
11779663 GATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGAC-GG-GTGA
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGCGA
* * * * * *
11779726 ----GCACTATGTCGG-CAGAGAGAGGGGATGCACAAGCCGTGGATCGATAGAGTGGTAGGTGAG
66 GCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG-G
* * * * *
11779786 TTTAGGCACATCTTCAGATTTCTACGTGACAATGCCATTTTTATGGCTTGTAAATTCACACAATG
130 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
11779851 GTCCCTTAAGCCTTGACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
11779916 AAAACTTTTTGTGGTTCAGG-ATTTT
260 GAAACTTTTTGAGGTTC-GGAATTTT
11779941 GTGACCATTT
Statistics
Matches: 1848, Mismatches: 192, Indels: 86
0.87 0.09 0.04
Matches are distributed among these distances:
894 198 0.11
895 24 0.01
896 15 0.01
897 211 0.11
898 492 0.27
899 45 0.02
900 4 0.00
901 7 0.00
902 363 0.20
903 480 0.26
904 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGCGA
GCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
AAACTTTTTGAGGTTCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCACCCCCGGCCCCCCGATC
GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTAGCGATGCTCCGACGATGGTGCCCCGATGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCTCGGTCTGGTCCGA
TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACAAGCGTACGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTCGCC
GGGTCCCCCTCTACGTGCTGCCGATCCTATTTCATAACCCTCGGTCCGGTCT
Found at i:11779518 original size:26 final size:26
Alignment explanation
Indices: 11779482--11779534 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11779472 CTGGTCCGAT
*
11779482 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11779508 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11779534 C
1 C
11779535 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11780301 original size:26 final size:26
Alignment explanation
Indices: 11780265--11780336 Score: 135
Period size: 26 Copynumber: 2.8 Consensus size: 26
11780255 CCGATCCGAT
*
11780265 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
11780291 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11780317 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
11780337 AATTTGCCTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11781214 original size:26 final size:26
Alignment explanation
Indices: 11781175--11781235 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
11781165 CCCTCGGTCC
11781175 AGTCCG-AT-CTTAGACTGGGAATGA
1 AGTCCGTATGCTTAGACTGGGAATGA
11781199 AGTCCGTATGCTTAGACTGGGAATGA
1 AGTCCGTATGCTTAGACTGGGAATGA
* *
11781225 ACTCCATATGC
1 AGTCCGTATGC
11781236 CTAAGTCAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 6 0.18
25 2 0.06
26 25 0.76
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
AGTCCGTATGCTTAGACTGGGAATGA
Found at i:11781929 original size:897 final size:893
Alignment explanation
Indices: 11779935--11782467 Score: 3424
Period size: 897 Copynumber: 2.8 Consensus size: 893
11779925 TGTGGTTCAG
*
11779935 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
11780000 CTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
65 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
11780065 CAATATAAGGGCCAAGTACCAGCGCCCATCGGACATCATATGCGTACAGCCCCCCCGGCCCCCCC
130 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACA--CCCCCCGGCCCCCCC
* ** * * *
11780130 GATCGCTGGAACCTCAATGTCGCCAATTAGGTTCTCTGACGATGCTCCGAGGATGGTGCCCCGAC
193 GATCGC-GGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* *
11780195 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCGAT
257 GAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-T
*
11780260 CCGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCATATGCTTAGACT
321 CCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACTCCATATGC-----CT
11780325 GGGAATGAACTCAATTTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
381 ---AA-G---TCAA----CC-----C-A--C--GAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
* * * * * * * * *
11780390 GGGGCGGGATGAGCAAGCCGGGGGTCGGTCGGGTCCCCCTCTGGGTGCTACCGATCCTACTGCCG
425 GGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTAGGTGCTGCCGATCCTGCTACCA
** * * * *
11780455 CAACCCTTTGGTTTGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA-CGACGA
490 CAACCC-TCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA
* *
11780519 AAC-G-AG-CGGGCGGCGGGGCAC-ACGCCGGCCAGAGAGACGAGATGCGC-AGCCGTGGATTGA
554 AACAGCAGACGGGCGGC-GGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCTGTGGATTGA
*
11780579 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGTTT
617 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTT
*
11780644 GTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
682 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
** * *
11780709 ATTTTTCACGATTTTTTAAACTTTTTACAGTTCAGGCTTTTTTTAAATTTTTTCGGAAGCCATTT
747 ATTTTTCACGATTTTCAAAACCTTTTACAGTTCAGGCTTTTTTAAAATTTTTTCGGAAGCCATTT
* *
11780774 TACCCCCAAACATGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAA
812 TACCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
11780839 AAACTGGAAGTGTACAA
877 AAACTGGAAGTGTACAA
*
11780856 -ATTTTGTGACCTTTTTGAAAAAAGTGT-CCCATTCCAGACAACTTTAATGGCTACTGGCAGCAA
1 GATTTTGTGACC-ATTTGAAAAAAGTGTCCCCATT-CAGAC-ACTTTAATGGCTACTGGCAGCAA
*
11780919 ACCTGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
63 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
11780984 GCC-ATATAAGGGCCAAGTTACCAGCACCCATCGCACATCATCTGCGCACACCCCCCGGGCCCTC
128 GCCAATATAAGGGCCAAG-TACCAGCACCCATCGCACATCATATGCGCACACCCCCCGGCCCCCC
* *
11781048 CGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCCCCG-CGATGCTCCGACGATGGTGCCCC-A
192 CGATCG-CGGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* *
11781111 GCGAAGAAAAATGCGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCA
256 -CGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-
* *
11781176 GTCCGATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAG
319 GTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACTCCATATGCCTAAG
* * *
11781241 TCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGATGGGATGCGCAAGTCGGGGA
384 TCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGA
* * *
11781306 TCGATTGGCTCCCCCTCTAGGTGCTGCCAATCCTGCTACCACAACCCTCAGTCTGGTCCGATCTT
449 TCGATCGGGTCCCCCTCTAGGTGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTCCGATCTT
*
11781371 AGACTGGGAATGAACTCCGTATGCCCAAGCCAACCGACAAAACGAGCAGACGGGCGAGCGGGCAC
514 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC-AGCAGACGGGCG-GCGGGCAC
11781436 TACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCA
577 TACG-CGGCCAGAGAGACGGGATGCGCAAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCA
**
11781501 CATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTT
641 CATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTT
* * * *
11781566 AAGCCTTCATGTGAAGTTTCATGG-AAGATGACTCGTTTTCTATTTTTGACGATTTTCAAAACCT
705 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACCT
* * * * ** *
11781630 TTTACGGTTCAGGGTTTTTTAAAATTTTTTTGGAAG-GAGTTTTGGCCCCAAACTTGGTAGACGT
770 TTTACAGTTCAGGCTTTTTTAAAATTTTTTCGGAAGCCA-TTTTACCCCCAAACATGGTAGACGT
11781694 GAT-CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCT-GAAGTGTACAA
834 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-CTGGAAGTGTACAA
*
11781753 GATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGACAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
11781818 CTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCAT-GAGGTTTGATGAGGGATAGGGGG
65 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGG
* *
11781882 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCC-GCCCCCCCG
129 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCGGCCCCCCCG
* * * * *
11781946 ATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCCCGACG
194 ATC-GCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* * * ** * *
11782011 AAGAAAAATGAGGTACCAGCACATGCCAGAGCCTAGCATGTATTGCTGCAACCCTCGGTCTGGTC
258 AAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CGTC
*** * *
11782076 CGATCTTTCTCTGGGAATGAACTCCCTTTGCTTAGACTGGGAATGAACTCCATATGCCTAAGTGA
322 CGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
* *
11782141 ACCCACGAAACGAGCGTGCAGGTGCTCAGCTGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCG
387 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCG
* * * * * *
11782206 ATCGGGTCCCTCTCTATGTGCTGCCGATCCTGCTA-TAGAAACCCTCAGTCTAGTCCAATCTTAG
452 ATCGGGTCCCCCTCTAGGTGCTGCCGATCCTGCTACCA-CAACCCTCAGTCTGGTCCGATCTTAG
* **
11782270 ACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA-TGAA-A-CA-A-GGG-GGCGGGCACTACG
516 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAGCAGACGGGCGGCGGGCACTACG
* * * *
11782329 CTGGCCAGAGCGATGGGATGCGCAAG-TCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
581 C-GGCCAGAGAGACGGGATGCGCAAGCT-GTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACAT
** *
11782393 CTTCATATTTCTGTGTGCCAATGTGATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGC
644 CTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
11782458 CTTCACGTGA
709 CTTCACGTGA
11782468 GAGCAAGAGA
Statistics
Matches: 1454, Mismatches: 128, Indels: 93
0.87 0.08 0.06
Matches are distributed among these distances:
888 20 0.01
889 119 0.08
890 1 0.00
891 48 0.03
892 97 0.07
893 2 0.00
894 3 0.00
895 2 0.00
896 55 0.04
897 497 0.34
898 219 0.15
899 30 0.02
902 2 0.00
906 4 0.00
909 1 0.00
910 2 0.00
913 2 0.00
917 1 0.00
918 139 0.10
919 45 0.03
920 35 0.02
921 130 0.09
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (893 bp):
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCGGCCCCCCCGAT
CGCGGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
AAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGAT
CTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCG
GGTCCCCCTCTAGGTGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAGCAGACGGGCGGCGGGCACTACGCGGCC
AGAGAGACGGGATGCGCAAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACCTTTTACAGTTCA
GGCTTTTTTAAAATTTTTTCGGAAGCCATTTTACCCCCAAACATGGTAGACGTGATCCTTGTATT
TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTGGAAGTGTACAA
Found at i:11783762 original size:26 final size:26
Alignment explanation
Indices: 11783726--11783778 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11783716 CTGGTCCGAT
11783726 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11783752 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11783778 C
1 C
11783779 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11786547 original size:11 final size:11
Alignment explanation
Indices: 11786527--11786559 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
11786517 ACCGGGGCAC
11786527 CATCGTCGGAG
1 CATCGTCGGAG
*
11786538 CATCGCCGGAG
1 CATCGTCGGAG
11786549 CATCGTCGGAG
1 CATCGTCGGAG
11786560 AACCTGACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:11789013 original size:26 final size:26
Alignment explanation
Indices: 11788977--11789029 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11788967 GTTGACTTAG
11788977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11789003 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11789029 G
1 G
11789030 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11789845 original size:894 final size:895
Alignment explanation
Indices: 11788110--11804771 Score: 15913
Period size: 892 Copynumber: 18.8 Consensus size: 895
11788100 GTTGACTTAG
* *
11788110 GCATA-GGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGG
1 GCATACGG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
11788174 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGCACCATCGTCGAAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
11788239 AACCTGACCAACAGCATTGGGGTT----C---C-GGGGGACC--GGGGGTGTGCTCAC-TGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * **
11788293 GCGATGGGTGCTGGTAATTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
11788358 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGACA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
11788423 TGGGTACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCAATTTTTTAGCTGAAATTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
11788488 CTGCACGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTGCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
11788553 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
11788618 TGCCATGAAACTTCACGTGAAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
520 TGCCATGAAACTTCACGTGAA-GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
**
11788683 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
11788748 CGCAT-CCTTCTCTCGGGCCGACGTAATGCCCGCCCGTCTGCCCGTCCGCTCGTTTCGTCAGTTG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCG---G--C--CCGCTCGTTTCGTCGGTTG
* * * * * * *
11788812 GCATAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCAAGA
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGA
* * * * * * *
11788877 TTGGAACTATGTAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGTCCCTTTGGCCGGCT
771 TCGGAGC-ATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
11788942 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
11789003 GCATACGGAGTTCATTCGCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11789068 CTCGGGCATGTGCTGATGCCACATTTTTCATT-GCCGGGGCACCATCGTCGGGAGCATCACCAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGTC-GGAGCATCACCGGA
* * *
11789132 GAACCTGACCGACGGCGTTTGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * *
11789197 TGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
11789262 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
11789327 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** *
11789392 T-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCAATCTGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
11789456 AAATTTTAAAAAATCCCGAACAGCAAAAAGTTTGAAAAATCGTGAAAAATAAAAAACAAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11789521 TTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* **
11789586 TATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
11789651 CGCAT-CCTTCTCT-TGGGCCGACGTAATGCC-CCCGGCCCGCTCGTTTCGTCGGTTGGCATAGG
649 CGCATCCCGTCTCTCT-GGCCGACGTAGTGCCGCCCGGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
11789713 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGCTTGCGGCAGTAAGATTGGAAC
713 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGAGC
* *
11789778 TATGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCC
778 -ATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
11789843 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAA
842 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
11789897 GCATACGGAGTTCATTCGTAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
11789962 CTCGGGCATGTGCTGGTGCCACATTTTTCATT-GCCGGGGAACCATCGCCAGAGCATCACCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * *
11790026 AACCTGACCGGCGGCATTTGGGTTCCGACGATC-GAGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
11790090 GCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
11790155 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGACA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
11790220 TGGGTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTTAGCTGAATTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG--TTTTTAGCTGAATTTTT
* * * * *
11790285 TTGTTCATGCCAACAAAAATACAAGGATCACCTCTACCATGTTTGGGGCCAAAAGTCCTTCTGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
11790350 AAAATTTTAAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
453 AAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
11790415 TTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
11790480 GGCATTGGTATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
11790545 TGCACATCCCGTCTCTCTGGCC-AGCGTAGTGCTCGCCCGCCCGCTCGCCTGCTCGTTTCGTCGG
647 TGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGC-CGCCCG---G--C-CC-GCTCGTTTCGTCGG
* * ** * *
11790609 TTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGATTGAGGGTTATC-GCAA
703 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTT-GCGGCAG
* * * ** * * * *
11790672 CAGCATCGACAGCACGCAGAGGGGGACCCGGTTGATCCTCGGCTTGTGCATCCCACCCCTCTGGT
766 CAGGATCG-GAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
11790737 CGGCTGGGTGCCCGCACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTA
830 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
11790802 A
895 A
** * * * *
11790803 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCAAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
11790868 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTC-GGGCACCATCGTCGGAG-A--ACC--TG-
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * *
11790926 A-CT-A--G-CAGCGTTGGGGTTCTGCCGATCGGGGGGGCC-GGGGGGTGTACGCAAATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
11790985 CGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
11791050 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11791115 GGGGACACTTTTTTCAAATGGGCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
11791180 TGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTAAC-AAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCGAAAA
* * * *
11791244 AAATTTAAAAAATCTCGAACCGCAAAAAGTTTAAAAAATCTTGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
11791309 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * **
11791374 ATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCC-TGTC-TAA
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * * *** ** * *
11791437 G-ATGCTGAGT-TCAT----TAC-CAGT----CTAAG-ATGCTCATTTCGTCGGTTGGCTTAGGG
650 GCATCCCGTCTCTC-TGGCCGACGTAGTGCCGCCCGGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
11791490 ATGCTGAGTTCATTGCCAGTCTAAGATCAGACC-AGATCGAGGGTTGCGGCAGCAGGATCTGCAG
714 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGATC-GGAG
* * * * * * *
11791554 CACGCAAAGGGGGACCCGACTGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCACC
777 CATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
11791619 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
842 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11791673 GCATACGGAGTTCATTCCTAGTCTAATATTGGACCGGACCGAGGGTTACGGCAGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11791738 CTCGGGCGTGTGTTGGTGCTGCATTTTTCTTCGTCGGAGCACCA---TC---G-----CCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
11791792 ACCTGACCGACGGGATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACAAGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
** * *
11791857 CGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
11791922 A-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAATT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11791986 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
11792051 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTTCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * **
11792116 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
11792181 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
11792246 TTGGTATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGACTTGCG
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
11792311 CATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGC
651 CATCCCGTCTCTCTGGCCGACGTA--G--TG-CCGCCCG---GCCCGCTCGTTTCGTCGGTTGGC
* * * ** * * * *
11792376 TTAGGCATACAGAGTTCATTCCCAATCTAAGATTGGATAGGACCGAGGGTTACGACAGCAAGAT-
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATC
* * * * *
11792440 GGACAGCATGTAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTTTGGCCGGCTG
773 GG--AGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
11792505 AGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTAGACTAA
836 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
11792565 GCATATAGAGTTCATTTCCAGTCTAAGATCAGACCGGGCTGAGGGTTTCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
11792630 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGG--CCA----C----CATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * *
11792684 ACCTGA-CGGCGGCATTGTGGTTCCGGCCATC-AGGGGG-C-GGGGGGTGTCCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
11792745 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCTCTCATCAAACCTCGAGAATTCAA
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
11792810 ACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11792875 GGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTAAATTATTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
** *
11792940 -TGCACACCAACAAAAATACAAGGATCACGTATACCAAGTTTGGGG------------CC-AAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * *
11792991 AACCTT------T--CG-A----AAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * **
11793043 TGCCATGAAACTTCACGTGAAGGCTTACGGGACCATTCTACGAATTTACAAGCCACCT-ACCA--
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA--TAAAAATG
* * * * * * * * * * * ** ** * *
11793105 CCCTATCG-ATCCATG-ACT-TGCACATCT-CGT---CTC-TCTGGC-CGGTGTAG-TGCC-CGC
583 GCAT-TGGCATGCA-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CCACG-
* ** * * * * * * * * *
11793159 CCGCCTGCCCGCCCGCCCGT-TCGTTTCGTCG--GTTG-GCTTCGGCATACGG--AGTTCATTCC
644 --GCTTG--CG-CATCCCGTCTC-TCTGGCCGACGTAGTGC--C-GC--CCGGCCCGCTCGTT-T
* * ** * * * * * *** * * *
11793218 CGAC-CTAAG-ATCGGACCAGACCGAGGGTT--GTGGTAG-C-AAGATCGG-CAGCACAGA-GG-
697 CGTCGGTTGGCTTAGG--CATA-CG-GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGT
** * ** * ** * * * * ** * *
11793274 -G-GG-A-CCCGATC-GATC-CCCGGCTTGTGCATCCCGCCCCTCTGGTCGACTGATTGC-C-TG
758 TGCGGCAGCAGGATCGGAGCATGCAG-AGGGGGA-CCCG--GC-C-GATCCCCGGCTTGCGCAT-
** * * * * ** * **** ** * * * ***** * * *
11793331 TACGCTCATTTCGTGGGTTGA-CTTAGGCATAC-AGAGTTCATTCCCAGTC-TAAGCATACAGAG
816 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAG
11793393 TTCATTCCCAGTCTAA
880 TTCATTCCCAGTCTAA
* * * * * * * ** * *
11793409 GATCAGACTGGA-CTGAGGGTTGCGACAG-C-AGGATGGGGACCCGACCGA---TCCCCGACTTG
1 G--CATAC-GGAGTTCA---TT-C-CCAGTCTAAGAT-CGGACCGGACCGAGGGT-TGCGGC-AG
* **** * * * *** * *
11793468 CACATCCCACCCCTCAGGC-TG-GCTAAGCGCCCGCA-CGCTCGTTTCGT-GGGTTG-ACTTAGG
55 CACAT-GCTGGGCTCGGGCATGTGCT-GGTG-CCGCATTTTTC--TTCGTCGGG--GCAC-CA-T
* * * *** * * * *** * ** **
11793528 CATACGAAGTTTATTC-CCAGTCTAAGCAT-ACGGA-GTTCATTTTCAG-T-CTAAAATCGGATC
111 CGT-CGGAG--CA-TCACC-GGAGAA-CCTGACCGACG-GCA-TTGGGGTTCCGACGATCGG-GG
** * * * * * * * * **
11793588 GGATC-GAGGGTTGTGACAGCACATGCTG-G-GCTCGG-GCAT-GTGC-TGGTGCCGTAT-TTTT
167 GGGCCGGGGGGGTGTG-C-GCACATGATGTGCGATGGGTGC-TGGTACTTGG-CCCTTATATTGG
**** * * * * * * * * *
11793646 CTTCACCGGGGCAC-CATC--GCC-GGAGAACCTGACCAGCGCATT---GAG-GTTCCGACGA-T
228 C--C-CCCTATCCCTCATCAAACCTCGAGAA-CTCA-CACCCCCTTAAAGAGCATT-TGA-GATT
** *** ** *** * ** * * * *
11793702 CGA-AGGGGCCGGGGGGTGTACGTACACTTCGAGTTTTTAGCTGAATTGTTTTTGTGGACGC--C
286 TTACA-GGTTTGCTGCCAGTA-G-CCA-TTAAAG--TGT--CTGAAATG-----G-GGACACTTT
** ** * * * *** * *** *
11793764 AAT-AAA-AAT-ACAAGGATCATGT-CTAC--CAAGTTTGGGGC-CAA-----AACT-CATTCCG
337 TTTCAAATGGTCACAA-AATCTTGTAC-ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-
* ** ** * *
11793816 AA-AAAATTTTA-AAAAATC-C-TGAACCGCAAAAGTTT-----CAAAAAT-CGT--G-AAAAA-
399 AACAAAA--ATACAAGGATCACGTCTA-C-C--AAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** * * * *** * * *
11793867 TAGAAAACGAGT--CG-ACTTGCCATGAAA-TTTC----AT-GTGAAGGCT---TAA-GGGAC--
458 TTTAAAA--AATCCCGAAC-CG-CA-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * * * ** * * * *
11793917 CATTG-TATG-AA-TTTAC---AAGCCATAAAAATGG--CATTGGCGTGCA--GA-AA--TATGA
518 C-TTGCCATGAAACTTCACGTGAAGGC-T--TAAGGGACCATT-GTATGAATTTACAAGCCATAA
* * *** * * * ** ** * * * * * *
11793969 AGATGTGCCTAAACCTACCTACCACCCTATCGATCTACG-GCTTGAGCATCCCGTATCT-CTAGC
578 AAATG-GCATTGGCAT-GC-A-GA-AATAT-GA-AGATGTGCCT-A--AACCC--ACCTACCACC
* * * * * * * ** * * ***
11794032 CGA-CGTAGTGCC-CGCCCGTCCGC-CCGGCCGCTTGTTTCATGGGTTGGCTTAG-G-CATACGG
631 CTATCG-A-T-CCACG-GCTTGCGCATC--CCG--TCTCTC-T-GGCCGACGTAGTGCCGCCCGG
* * * ** * * * * ** *** * * * *
11794092 --AGTTCATTTCCAGTC--TAAGATCAGACCAGACCAAG-GGGTACGGCAG-C-AGGATCGG-CA
686 CCCGCTCGTTT-C-GTCGGTTGGCTTAG-GCATACGGAGTTCATTC-CCAGTCTAAGATCGGACC
* * * * * **** **
11794149 GCACACAGAGGG--G-GAC-CCAGTCGATCCCTG-GCTTGC-GCATCTCG-CCC--CTC--TGGC
747 G-A-ACCGAGGGTTGCGGCAGCAG--GAT--CGGAGCATGCAG-AGGGGGACCCGGC-CGATCCC
* * * * ** * * **** ** * *****
11794203 CGGC-TGAGC-GCCCGCACGCTAATTTCATGGGTTGA-CTTAGGCATACG-GAG-TTCATTCCCA
804 CGGCTTGCGCATCCCGC-CCCT-CTGGC--CGGCTGAGCGCCCGC--ACGCTCGTTTCGTGGGTT
* *
11794263 GTC-TAAGCATACGGAGTTCATTCCCAG--T--
863 GACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11794291 -C-TA---AG---------A---T----T-GGACTGGACTGAGGGTT-CTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGCAGCACATGCTGG
* *
11794333 GCTCGGGCATGTGCTGGTGCCGCATTTTTC-T--T--------CA-C--CGGAGCATCATCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * *
11794384 AACCTGATCGACGACATTGGGGTTCCGATGATCGGGGGGG-CTGGGGGGTGTGTGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
11794448 GCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
11794513 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
11794578 TGGGGATACCTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* ** *
11794643 T-TGCATGCCAACAAAAATAAAAGGATCACGTCTATAAAGTTTGGGGCCAAAACTCCTTTCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
11794707 AAATTTTAAAAAATCCCGAACCGC-AAAAGTTTC-AAAATCATGAAAAATAG-AAACTGA-T-G-
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-GAGTCGT
* *
11794766 CTTGCCATGAAATTTCACGTGAAGGCTT-A-GG-CC---G-A-G-ATTTACAAGCCAT-GAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
11794821 GCATTGGCATGC-G-AATATG-AG-TGTGCATAAA-CCAGCTACCA-CCTATCGATCC-TGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * ** **
11794879 GCGCATCCCGTCTCTCTGG-CGACGTAGTG-C-ACCGTCGTCCGCTCTTTTTGATCTTCTCTTTT
648 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCG--GCCCGCTC--GTT--TCGTCGGTTGG
* *
11794941 CGTTGGCAGGCATATGGAGTTCATTCCCAGTCTAAGAT-GGAACC--AGCGAGGGTTGTC-GCA-
707 C-TT---AGGCATACGGAGTTCATTCCCAGTCTAAGATCGG-ACCGAACCGAGGGTTG-CGGCAG
* * * * ** * * **
11795001 -AGGATCGAGCAGCACGTAGATGGGGACTC-GCCGGAT-CCCTACTTGTGCATCTCGGGCCTCTG
766 CAGGATCG-G-AGCATGCAGAGGGGGACCCGGCC-GATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * **
11795063 GTCGGCTGA--GCCCGCAC-CTCATTTCG-GGGTTGA-TTAGTCATACGGAGTTCATTTTCAGTC
828 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
11795123 TAA
893 TAA
* * *
11795126 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
11795191 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCAGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * ** * * *
11795256 ATCTGATCGGTGGCATTGGGGTTCCGACGATCGGAGGGGCC-GGGGGGTGTCCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
11795320 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
11795385 ACCCCCTTTAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11795450 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCCGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
11795515 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCGAAACTTCTTCCAAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * *
11795580 ATTTTAAAAAATCCCGAACCTTAAAAAGTTTCATAAATCATGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * **
11795645 GCCATGAAACTTCACATGAAGACTTAAGGGACCACTGTATGAATTTACAAGTGATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
11795710 TTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCG
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
11795775 CATCCCGTCTCTCAGGCCGATGTAATGCCTGCCC-GCCCGTTCGTTTCGTCGGTTGGCTTAGGCA
651 CATCCCGTCTCTCTGGCCGACGTAGTGCC-GCCCGGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** ** * * * * * *
11795839 TATTGAGTTCATTCCCCAAACTAAGATCGAATC-AGACCGAGGATTGCGGTAGCAAGATCAGCAG
715 TACGGAGTTCATT-CCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGATC-GGAG
* ** * * *
11795903 CATGCAGAGGTGGACCCGATCGATCCCCGGCTTACGCATCCAGCCCCTCTGTCCGGCTGAGCGCC
777 CATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
11795968 CGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
11796022 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
11796087 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG-A--ACC--TG-
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * ** * *
11796146 ACC-G-GCGAC-G--TTAGGGTTCCGGTGATCGGGGGGGCC-GGGGGGTATGCGCACATGATGTA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* ** *
11796205 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCTCATCAAATGTCAAGAACTCA
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATCAAACCTCGAGAACTCA
* * * *
11796270 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAATTTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
11796335 CGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
11796400 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
11796465 AATTTTGAAAAATCCCCAACGGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
11796530 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * ** *
11796595 ATTGACGTGCAGAAATATGAAGATGTGACTAAACCCACCTTTCACCCTATCGATCCATGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
11796660 GCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCACCCGCTTGTTTCATCGATTGGC
650 GCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCG---G---CCCGCTCGTTTCGTCGGTTGGC
* * * *
11796725 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGGGGGTTGCAGCAGTAAGAT
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
11796789 CGGCGGCATGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCG-CCATCTAGCCGGTTG
772 CGG-AGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * * * * *
11796853 AGTACCCGCATGCTCGTTCCGTGGGTTGACTTAGGCATACAGAGTTCGTTCCCATTCTAA
836 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11796913 GCATACGGAGTTCATTCCCAGCCTAAAATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
11796978 CTCGGGAATGTGTTGGTGCCGTATTTTTCTTCGTCGGGCCACCATCGTCAGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
11797043 ACCTGAAC-AGCGGTATTGGGGTTACGACGAT---------C-GGGGGGTATGCGCACATGATGT
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
11797097 TCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
11797162 CACCCCCTTTAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** *
11797227 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAACTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
11797292 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
11797357 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * * *
11797422 TCCCATGAAACTTCTCGTGAAGGCATAAGGGACCGTTGTATGAAGTTACAAGCCATAAAAATGAC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
11797487 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
11797552 GCATCCCGTCTCTTTGGCTGGCATAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCG---G--C-C-CGCTCGTTTCGTCGGTTGG
* * * *
11797617 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACC-AGACTGAGGGTTGTGGCAACAGGA
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGA
* * * * ** * *
11797681 TCGGTGCCACGTAGAAGGGGACCCAACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCT
771 TCGGAG-CATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
11797746 GAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCGTTCCTAGTCTAA
835 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11797807 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** * **
11797872 CTCGGGCATGTGTTGGTGCCATATTTTTTTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
*
11797937 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGTGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
11798002 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAATCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * * *
11798067 ATGCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAC
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
11798132 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * *
11798197 TGCATACCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGCACCAAAACTCCTTCTGAGAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
11798262 ATTTTTAAAAGTCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
11798327 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
11798392 TTGGCTTGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCG
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * **
11798457 CATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCC-GCCCGCTCGTTTCATCGGTTGGCACAGGCA
651 CATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCGGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
11798521 TATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGCCAGCAGGATTGGCAGCA
715 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGG-AGCA
* * ** * * * *
11798586 TGCAGAGGGGGTCCCAGTTGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCG
779 TGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
11798651 TACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
844 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
11798703 GCATACGGAGTTCATTCCCAGTATAAGATCGGACCAAACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
11798768 CTCGAGCATGTGCTAGTGCCGCATTTTTCTTCG-CTGGGCCACCATCG-CTGGAGCATCACCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTC-GGAGCATCACCGGA
**
11798831 GAACCTGACCGGA-GGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGCGGGTGTGCGCACATGA
129 GAACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGA
* * *
11798895 TATGCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
11798960 TCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCT
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CT
* * * *
11799024 -AAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTCCGAGTTTTTAGCTAAATTT
321 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
11799088 TTTTTTGCATGCCAACAAAAATACAAGGATCATGGCTACCAAGTTTGGGGCCAAGACTCCTTCCG
386 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
** * * *
11799153 AAAAAATTTTAAAAAATCTTGAGCCGCAAAAAGTTTCAAAAATCGTGAAAAATATAAAACGAGTT
451 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
11799218 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACGATTGTATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
11799283 TGGCATTGGCATGCAGAAATTTCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
581 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
11799348 TTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCGCAC-GTCCGCTCGTTTCATCGGTTGGCTTA
646 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** ** *
11799412 GGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-ATAGACTAAGGGTTGCAGCAGCAGGATCGG
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGG
* * * * ** * * *
11799476 TAGAACGCAGAGAGGAACCCGATCGATCCCCGACTTGCACATCCCGCCCCTCTGGTCGGCTGAGC
775 -AGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
11799541 GCCCGTACGCTTGTTTTC-TGGGTTGACATAGGCATACGGAGTTCATTCCCAATCTAA
839 GCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
11799598 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
11799663 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATC-ACAGAAGCATCGCTTGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAG
* * * * * *
11799727 AACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGGGGACCGGGGGGGTGTGGGTACATGATAT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
11799792 GCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
11799857 CAACCCTTTAAAGAGCATTTGAGA-TTTATAGGTTTGCTG-CAGTAGCCATTAAAGCGTCTG-AA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
11799919 T-GGGACACTTTTTTCAAATGGTCAC-AAATCTTGTGCACTTCGAGTTTTTAGCTGAA-TTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * *
11799981 GTGCATGCCAACAAAAATACAAGGATCACGTCTATCGTGTTT-CGGCCACAACAT-CTTCCGAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAAA
*
11800044 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC-------AT-G-AAA--A------
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11800092 -----AT---ACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * * *
11800149 CATTGACACACAGAAATTTGAAGATGGGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *** *
11800214 CGCATCCCGTCTCTCTGGCTGGCGTAGTGCCGCGC-ATTCGCTCATTTCGTCGGTTGGCTTAGGC
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** * * *
11800278 ATACGGAGTTCATTCCCTGTCTAAGATTGGAATGGACCGAGGGTTACAGCAGCAGGATCGGTAGC
714 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGG-AGC
* * * * * *
11800343 ACT-CAGAGGGGGACCCCGTCGATCCTCGGCTTGCGCAACCCGCCCCTCTGGTCGGCTAAGCGCC
778 A-TGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
11800407 CGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11800461 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAACCCATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * * * * ** ***
11800526 CTCGGGCATGTGCTAGTGCTACTTTTTTTGTTAGCCGGGGCACCGTCGCCAAAGCATTGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGC-ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
11800591 AACCTGACCGACGGCATTGGGGTTCCGGCGATAGGGGGGGCC-GGGGGGTTTCCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
11800655 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
**
11800720 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTTTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
11800785 TTGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** *
11800850 GTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGGTTGGGGTGAAAACACCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
11800915 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
11800980 TGCAATGAAATTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
11801045 ATTGGTA-GTAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
11801109 GCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGGCCGCTTGCTCGTTTCGTCGGTGGGCTTA
650 GCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCGGCC-C--GCTCGTTTCGTCGGTTGGCTTA
* * * *
11801174 AGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-AGACCGAGTGTTGTGGCAGCAGGATCGG
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGG
** * * * * *
11801238 CAGCACACAGAGGGGGACTCGGCCGATCTCCGGCTTGCACATCCTGCCCCTCTGGCTGGCTGAG-
775 -AGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
11801302 GGCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
839 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
11801359 GCATAGGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGTTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
11801424 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG---CA---TC---G--T---CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * *
11801475 ACCTGACAGACGGCATTCGGGTTTCGACGATCGAGGGGGCCGAGGGGGTGTGCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
11801540 CGATGGGTGCTGGAACTTAGCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
11801605 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTG-AAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11801669 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGCATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
11801734 TGCATGCCAACAAAAATACAAGGATC-CTGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
391 TGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
11801798 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTC-AAAATCATGAAAAATTAAAAAATGAGTCGTC
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAACGAGTCGTC
* *
11801862 TTGCCATGGAAACTTCACGTGAAGGCTTTAGGGACCATTGTATGAATTTAGAAGCCAT-AAAATG
519 TTGCCAT-GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
11801926 GCATTGGCACACAGAAATATGAAGATGGTAACCTAAACCCACCTACCAACCCTATTCGATCCACG
583 GCATTGGCATGCAGAAATATGAAGAT-GT-GCCTAAACCCACCTACC-ACCCTA-TCGATCCAC-
* * **
11801991 GGCTTGCGCATCGCGTCTCTCTGGCCGACGTAGTGCCCTCCCACCCGTTCCGCTCGTCTTCGTCG
643 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-----CCGCCCGGCCCGCTCGT-TTCGTCG
* * * * * * *
11802056 GTTGGCTTAGGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGTAC
702 GTTGGCTTA-GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAG
* * * * * *
11802121 CAAGATCGGCAGTACGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGC
766 CAGGATCGG-AGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
11802186 CGGTTGAGCGGCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
830 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
11802251 A
895 A
* * * * *
11802252 GCATACGGAGTTCATTGCCAGTCTAACATCCGACCGGACCGAGGGTTGCGACAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
11802317 CTCGGGCATGTGCTGGTGACGCATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCACTAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
** * **
11802382 ACCTGACCGACGATATTGGGGTTCTGGTGATCGGGGGGGCCGGACGGGGGGGTGTGCGCACATGA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C---CGGGGGGGTGTGCGCACATGA
* *
11802447 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAAC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
11802512 TCAC-TCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
11802576 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGGGTTTTTAGCTGAATTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
11802641 TTTGTGCATGCCAACAAAAATACAAGGATCTCGTCTAACAAGTGTGGGGCCAAAAATCCTT-CGA
387 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * * * *
11802705 AAAAAATTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACAAGTCG
452 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
11802770 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATCTACAAAG-CATTAAAA
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCA-TAAAA
**
11802834 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAG
580 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
11802899 CTTACGCATCCCGTCTTTCTGGCCGACGTAGTGATCGCCCGCCCGCCCGCCCATTCATGTT-GTC
645 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCG---GCCCG--C--TCGT-TTCGTC
* * *
11802963 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-AGATCGAGGGTTGTGGCA
701 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCA
* * * * ** * * *
11803027 ACAGGATTGGTAGCACGCAGAGGGGGACCTGGCCGATCCTTGGCTTGTGCATCCTGTCCCTCTGG
765 GCAGGATCGG-AGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
11803092 CCGACTGAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCT
829 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
11803157 AA
894 AA
* * * * * ** *
11803159 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAAGGTTGCGTTAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
11803224 -TCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCGTCGGGAAATTGTCGGAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GG--A--G-C--ATC
* * ** * *
11803287 ATTGTCGGAGAACCTAACCGACGGCATTCAGGTCCCGACGATC-GGGGCGCCGGGGGGGTGTGCG
123 A---CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
* * * * *
11803351 CACATGATGTGCAATGGGTGCTGGTACTTAGCCCTTATATTTGCCCTCTATCCCTCAGCAAACCT
185 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
11803416 CGATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAA
250 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
11803481 GTGTCTG-AATGGGGACACTTTTTTCAAA-GGTCACAAAATCTTTTACACTTCGATTTTTTAGCT
315 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
11803544 GAATTTTTTTGTGCATGCCAA-AACAAATACAAGGATCCCGTCTA-C----TTGGGGCCAAAACT
380 GAATTTTTTTGTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
11803603 CCTTCCCAAAAAATTTTCAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
444 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* *
11803668 ACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCC
509 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
11803733 ATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
574 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* **
11803798 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACC-CTCCCACCCGCTCGTTTCGTCGG
639 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGC-CCGGCCCGCTCGTTTCGTCGG
* * * * *
11803862 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCA
703 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCA
*** * * * *
11803927 GGATCGGTAGCACATAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCAG
768 GGATCGG-AGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
11803992 GCTAAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAG--T--
832 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
11804052 -C-T----A----A----CA-TC------C-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
11804095 CTCGGGCATGTGTTGGTGATGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * **
11804160 ACCTGACTGGCGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGACGGGGGGGTGTGCGCACATGA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C---CGGGGGGGTGTGCGCACATGA
* **
11804225 TGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAAC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
11804290 TCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
11804355 AAATGGGGACAC-TTTTTCAAATGGTCACAAAATCCTTGTACACTAT-GAGTTTTTAGGCTTGAA
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAAT-CTTGTACACT-TCGAGTTTTTA-GC-TGAA
11804418 TTTTTTTGTG-ATGCC-AC------A-AA--A--A----TA-CAAGTTTGGGGCCAAAA-TCCTT
383 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
11804464 TCTAAAAAATTTTAAAAAATCTCGAAGCCGCAAAAA-TTTC-AAAATCATGAAAAATAGAAAACG
448 CCGAAAAAATTTTAAAAAATCCCGAA-CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
11804527 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATCTACAAG-CATT
512 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-T
* * *
11804591 AAAAATGGGCATTGGCAT-CAGAAATCATGAAGATGTTGCCTAAATCGATCTACCACCCTATCGA
576 AAAAAT-GGCATTGGCATGCAGAAAT-ATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGA
** *
11804655 TCCATAAGCTTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCTGATCGCCCGCCCGCCGCCCGCTA
638 TCCA-CGGC-TTGCGCATCCCGTCTCTCTGGCCGACGTA---G-T-G-CCGCCCG--GCCCGC--
*
11804720 GGTCGTTTCGTCGCGTTGGCTCTAGGCATACGGAGTTCATTCCCTGTCTAAG
691 --TCGTTTCGTCG-GTTGGCT-TAGGCATACGGAGTTCATTCCCAGTCTAAG
11804772 CATATGAAGT
Statistics
Matches: 13159, Mismatches: 1907, Indels: 1425
0.80 0.12 0.09
Matches are distributed among these distances:
822 7 0.00
823 4 0.00
824 6 0.00
825 5 0.00
826 3 0.00
827 6 0.00
828 18 0.00
829 10 0.00
830 19 0.00
831 43 0.00
832 29 0.00
833 49 0.00
834 56 0.00
835 20 0.00
836 27 0.00
837 35 0.00
838 8 0.00
839 8 0.00
840 7 0.00
841 5 0.00
842 12 0.00
843 11 0.00
844 40 0.00
845 22 0.00
846 34 0.00
847 14 0.00
848 13 0.00
849 27 0.00
850 33 0.00
851 24 0.00
852 11 0.00
853 11 0.00
854 35 0.00
855 27 0.00
856 103 0.01
857 114 0.01
858 53 0.00
859 6 0.00
860 42 0.00
861 8 0.00
862 43 0.00
863 598 0.05
864 84 0.01
865 26 0.00
866 16 0.00
867 206 0.02
868 93 0.01
869 83 0.01
870 376 0.03
871 777 0.06
872 137 0.01
873 68 0.01
874 69 0.01
875 12 0.00
876 47 0.00
877 14 0.00
878 13 0.00
879 15 0.00
880 4 0.00
881 8 0.00
882 27 0.00
883 243 0.02
884 242 0.02
885 98 0.01
886 517 0.04
887 38 0.00
888 176 0.01
889 249 0.02
890 92 0.01
891 449 0.03
892 1178 0.09
893 558 0.04
894 970 0.07
895 489 0.04
896 1029 0.08
897 297 0.02
898 137 0.01
899 134 0.01
900 3 0.00
901 9 0.00
902 30 0.00
903 134 0.01
904 629 0.05
905 354 0.03
906 413 0.03
907 257 0.02
908 21 0.00
909 65 0.00
910 188 0.01
911 345 0.03
912 58 0.00
913 3 0.00
914 1 0.00
915 5 0.00
916 27 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGAGCATG
CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11789907 original size:26 final size:26
Alignment explanation
Indices: 11789871--11789923 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11789861 GTTGACTTAG
*
11789871 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
11789897 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11789923 G
1 G
11789924 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11790813 original size:26 final size:26
Alignment explanation
Indices: 11790777--11790829 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11790767 GTCGACTTAG
11790777 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11790803 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11790829 G
1 G
11790830 ATCAAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11791683 original size:26 final size:26
Alignment explanation
Indices: 11791647--11791698 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
11791637 GTTGACTTAG
11791647 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
11791673 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
11791699 TATTGGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:11793393 original size:26 final size:26
Alignment explanation
Indices: 11793357--11793409 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11793347 GTTGACTTAG
11793357 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11793383 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11793409 G
1 G
11793410 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11793556 original size:26 final size:26
Alignment explanation
Indices: 11793527--11793578 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11793517 GTTGACTTAG
*
11793527 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* **
11793553 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11793579 AATCGGATCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11794273 original size:26 final size:26
Alignment explanation
Indices: 11794243--11794295 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11794233 GTTGACTTAG
11794243 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11794269 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11794295 G
1 G
11794296 ATTGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11795137 original size:26 final size:26
Alignment explanation
Indices: 11795101--11795152 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11795091 GTTGATTAGT
**
11795101 CATACGGAGTTCATTTTCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
11795127 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
11795153 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:11796032 original size:26 final size:26
Alignment explanation
Indices: 11795996--11796048 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11795986 GTTGACTTAG
11795996 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11796022 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11796048 G
1 G
11796049 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11796938 original size:26 final size:26
Alignment explanation
Indices: 11796887--11796938 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11796877 GTTGACTTAG
* **
11796887 GCATACAGAGTTCGTTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
11796913 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
11796939 AATCGGACCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:11797814 original size:26 final size:26
Alignment explanation
Indices: 11797784--11797833 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11797774 GACTTAGGCG
* *
11797784 TACGGAGTTCGTTCCTAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
11797810 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
11797834 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:11798707 original size:26 final size:26
Alignment explanation
Indices: 11798677--11798729 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11798667 GTTGACTTAG
* *
11798677 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
11798703 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
11798729 G
1 G
11798730 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:11799035 original size:896 final size:894
Alignment explanation
Indices: 11793723--11804771 Score: 13461
Period size: 896 Copynumber: 12.4 Consensus size: 894
11793713 GGGGGTGTAC
* * * *
11793723 GTACACTTCGAGTTTTTAGCTGAATTGTTTTTGTGGACGCCAATAAAAATACAAGGATCATGTCT
1 GTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* *
11793788 ACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCCTGAACCGC-AAAAGTTTC
65 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* * * *
11793852 AAAAATCGTGAAAAATAGAAAACGAGTCGACTTGCCATGAAATTTCATGTGAAGGCTTAAGGGAC
130 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
11793917 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAA
195 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * * *
11793982 CCTACCTACCACCCTATCGATCTACGGCTTGAGCATCCCGTATCTCTAGCCGACGTAGTGCCCGC
260 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-
* * * *
11794047 CCGTCCGCCCGGCCGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGA
324 -C--CCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** * *
11794112 TCAGACCAGACCAAGGGGTACGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCAGTCGATCCC
382 TCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GCCGATCCC
* ** *
11794177 TGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAATTTCATGGGTTGACTTA
446 -GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
11794242 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGA
510 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
11794307 CTGAGGGTT-CTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-T--T---
575 CTGAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * * **
11794365 -----CA-C-C-GGAGCATCATCGAAGAACCTGATCGACGACATTGGGGTTCCGATGATCGGGGG
639 GGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
* * *
11794422 GG-CTGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCC
704 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
11794486 TATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
769 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
11794551 TACCAGTAGCCATTAAAGTGTCTGAAATGGGGATACCTTTTCCAAATGGTCACAAAATCTT
834 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
11794612 GTACACTTCGAGTTTTTAGCTGAATTGTTTTT-TGCATGCCAACAAAAATAAAAGGATCACGTCT
1 GTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
** *
11794676 ATAAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGC-AAAAGTTTC
65 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
*
11794740 -AAAATCATGAAAAATAG-AAACTGA-T-G-CTTGCCATGAAATTTCACGTGAAGGCTT-A-GG-
130 AAAAATCATGAAAAATAGAAAAC-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
11794797 CC---G-A-G-ATTTACAAGCCAT-GAAATGGCATTGGCATGC-G-AATATG-AG-TGTGCATAA
194 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
11794851 A-CCAGCTACCA-CCTATCGATCC-TGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGCACC
259 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC-CC
* * * * ** ** *
11794912 G-TCGTCCGCTCTTTTTGATCTTCTCTTTTCGTTGGCAGGCATATGGAGTTCATTCCCAGTCTAA
323 GCCCGCCCGCTC--GTT--TCGTCGGTTGGC-TT---AGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11794976 GAT-GGAACCAG--CGAGGGTTGTCGCA--AGGATCGAGCAGCACGTAGATGGGGACTCGCCGGA
380 GATCGG-ACCAGACCGAGGGTTGTGGCAGCAGGATCG-GCAGCACGCAGAGGGGGACCCGCC-GA
** * * ** * *
11795036 TCCCTACTTGTGCATCTCGGGCCTCTGGTCGGCTGA--GCCCGCAC-CTCATTTCG-GGGTTGA-
442 TCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* ** * *
11795096 TTAGTCATACGGAGTTCATTTTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
507 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
11795161 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCC
572 GGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * ** * *
11795226 AGGGCACCATCGCCGGAGCATCGTCGGAGAATCTGATCGGTGGCATTGGGGTTCCGACGATCGGA
637 GGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG
* *
11795291 GGGGCC-GGGGGGTGTCCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
702 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
11795355 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTTAAGAGTATTTGAGATTTTACAGGTTT
767 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
11795420 GCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
832 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
11795483 GTACACTTTGAGTTTTTAGCCGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * **
11795548 CCAAGTTTGGGGTCGAAACTTCTTCCAAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCA
66 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* * *
11795613 TAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGACTTAAGGGACC
131 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* ** ** *
11795678 ACTGTATGAATTTACAAGTGATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAAC
196 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
11795743 CCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCAGGCCGATGTAATGCCTGCC
261 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* ** ** * *
11795808 CGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATATTGAGTTCATTCCCCAAACTAAGATCGAATCA
326 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCA
* * * * * * * * *
11795873 GACCGAGGATTGCGGTAGCAAGATCAGCAGCATGCAGAGGTGGACCCGATCGATCCCCGGCTTAC
390 GACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-CCGAT-CCCGGCTTGC
* * * *
11795938 GCATCCAGCCCCTCTGTCCGGCTGAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACG
453 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
11796003 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGT
518 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGT
* *
11796068 TGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG---CA--
583 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * *
11796128 -C-----CATCGTCGGAGAACCTGACCGGCGACGTTAGGGTTCCGGTGATCGGGGGGGCC-GGGG
648 GCTGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG
* * *
11796186 GGTATGCGCACATGATGTACGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCTC
713 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTC
** * *
11796251 ATCAAATGTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTA
777 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
11796316 GCAATTAAAATTTCTGAAACGGGGACACTTTTTTCAAATGGTCACAAAATCTT
842 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
11796369 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
11796434 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCCAACGGCAAAAAGTTTCA
66 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* *
11796499 AAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
131 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
11796564 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGACGTGCAGAAATATGAAGATGTGACTAAAC
196 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
** * *
11796629 CCACCTTTCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCC
261 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCC
* * *
11796694 CGCCCGCCACCCGCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
322 CGCCCG---CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * * *
11796759 GGACCAGACCGGGGGTTGCAGCAGTAAGATCGGCGGCATGCAGAGGGGGACCCGACCGATCCCCG
384 GGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-CCGAT-CCCG
* * * * ** * *
11796824 ACTTGCGCATCCCG-CCATCTAGCCGGTTGAGTACCCGCATGCTCGTTCCGTGGGTTGACTTAGG
447 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * * * *
11796888 CATACAGAGTTCGTTCCCATTCTAAGCATACGGAGTTCATTCCCAGCCTAAAATCGGACCAGACC
512 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT
* * * * *
11796953 GAGGGTTGCGGTAGCACATGCTGGGCTCGGGAATGTGTTGGTGCCGTATTTTTCTTCGTCGGGCC
577 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * *
11797018 ACCATCG-TCAGAGCATCATCGGAGAACCTGAAC-AGCGGTATTGGGGTTACGACGAT-------
642 ACCATCGCT-GGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGG
* *
11797074 --C-GGGGGGTATGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
705 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
11797136 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTTAAGAGTATTTGAGATTTTACAGGTTTGCT
770 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
11797201 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
835 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
** *
11797261 GTACACTTTAACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
*
11797326 CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
66 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
** * * *
11797391 AAAATTGTGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCTCGTGAAGGCATAAGGGACC
131 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
11797456 GTTGTATGAAGTTACAAGCCATAAAAATGACATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
196 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
11797521 CCAGCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCTGGCATAGTGCCCGCC
261 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCC
*
11797586 CGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
322 CGCCCG--C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
11797651 CGGACCAGACTGAGGGTTGTGGCAACAGGATCGG-TGCCACGTAGAAGGGGACCCAACCGATCCC
383 CGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAG-CACGCAGAGGGGGACCC-GCCGAT-CC
* * * *
11797715 CAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTA
445 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
11797780 GGCGTACGGAGTTCGTTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
510 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * ** * **
11797845 -TCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTTTTCACCGG
575 CT-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * *
11797909 GGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGTG
639 GGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
*
11797974 GGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
704 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * ** *
11798039 TATCTCTCATCAAATCTCGAGAACTCACATGCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
769 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
11798104 TGCCAATAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTTCAAATGGTCACAAAATCTT
834 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
11798165 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAGGGATCACGTCTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
** * * * * *
11798230 CCAAGTTTGGCACCAAAACTCCTTCTGAGAAAATTTTTAAAAGTCTCGAACCGCAAAAAGTTTCA
66 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
11798295 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
131 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
11798360 ATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCTTGTAGAAATATGAAGATGTGCCTAAAC
196 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
11798425 CCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCC
261 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* ** * *
11798490 CGCCCGCTCGTTTCATCGGTTGGCACAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGG
326 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * * ** *
11798555 ACCGAGGGTTGTGCCAGCAGGATTGGCAGCATGCAGAGGGGGTCCCAGTTGATCCTCAGCTTGCG
391 ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GCCGATCC-CGGCTTGCG
* * * * *
11798620 CATCCCGCCCCTCTGGCCGACTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATATGG
454 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* **
11798685 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCGGACCAAACTGAGGGTT
519 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
* * * *
11798750 GTGGCAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCGCATTTTTCTTCG-CTGGGCCACCATC
584 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATC
** *
11798814 GCTGGAGCATCACCGGAGAACCTGACCGGA-GGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGG
648 GCTGGAGCATCGTCGGAGAACCTGACC-GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
* *
11798878 CGGGTGTGCGCACATGATATGCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
712 -GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
11798943 CATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
776 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
11799007 AGCCATTAAAGTGTCCT-AAATCGGGACACTTTTTTCAAATGGTCACAAAATCTT
841 AGCCATTAAAGTGT-CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * * *
11799061 GTGCACTCCGAGTTTTTAGCTAAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGGCTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* ** *
11799126 CCAAGTTTGGGGCCAAGACTCCTTCCGAAAAAATTTTAAAAAATCTTGAGCCGCAAAAAGTTTCA
66 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* * * * *
11799191 AAAATCGTGAAAAATATAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACG
131 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
11799256 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATTTCAAGATGTGCCTAAAC
196 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
11799321 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTG-CCGCA
261 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * **
11799385 CGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAATAG
326 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
** ** * * * * * * *
11799450 ACTAAGGGTTGCAGCAGCAGGATCGGTAGAACGCAGAGAGGAACCCGATCGATCCCCGACTTGCA
391 ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-CCGAT-CCCGGCTTGCG
* * * *
11799515 CATCCCGCCCCTCTGGTCGGCTGAGCGCCCGTACGCTTGTTTTC-TGGGTTGACATAGGCATACG
454 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACG
* * * *
11799579 GAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGA-TCGAGGG
518 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGG
* * *
11799643 TTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCAT
582 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * * *
11799708 CACAGAAGCATCG-CTTGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGGGGACCGGG
647 CGCTGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG
* * * *
11799772 GGGGTGTGGGTACATGATATGCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
711 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
11799837 CATCAAACCTCGAGAACTCACAACCCTTTAAAGAGCATTTGAGA-TTTATAGGTTTGCTG-CAGT
776 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
11799900 AGCCATTAAAGCGTCTG-AAT-GGGACACTTTTTTCAAATGGTCAC-AAATCTT
841 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
11799951 GTGCACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* ** * * *
11800015 TCGTGTTT-CGGCCACAACAT-CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
66 CCAAGTTTGGGGCCAAAAC-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
11800078 AAAAATC-------AT-G-AAA--A-----------AT---ACTTCACGTGAAGGCTTAAGGGAC
130 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * ** * *
11800118 CATTGTATTAATTTACAAGCCATAAAAATGGCATTGACACACAGAAATTTGAAGATGGGCCTAAA
195 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * *
11800183 CCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTG-CCGC
260 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* *** * * * ***
11800247 GCATTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGAATG
325 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
*** * * *
11800312 GACCGAGGGTTACAGCAGCAGGATCGGTAGCACTCAGAGGGGGACCCCGTCGATCCTCGGCTTGC
390 GACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CCCGCCGATCC-CGGCTTGC
* * * *
11800377 GCAACCCGCCCCTCTGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACG
453 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
11800442 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
518 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGT
* * * * * ** * * * * *
11800507 TGTGGCAACCCATGCTAGGCTCGGGCATGTGCTAGTGCTACTTTTTTTGTTAGCCGGGGCACCGT
583 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC-ATTTTTCTTCGTCGGGGCACCAT
*** * *
11800572 CGCCAAAGCATTGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATAGGGGGGGCC-GGG
647 CGCTGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
* *
11800636 GGGTTTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
712 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
**
11800701 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTTTGCCAGTA
777 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
11800766 GCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGACACAAAATCTT
842 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
11800819 GTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* ** * *
11800884 CCAAGGTTGGGGTGAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
66 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* * * *
11800949 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAATTTCACGTGAAGGCTTAAGGCACC
131 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
11801014 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTA-GTAGAAATATGAAGATGTGCCTAAAC
196 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
11801078 CCGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCC
261 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * *
11801143 CGGCCGCTTGCTCGTTTCGTCGGTGGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
326 C-GCC-C--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * *
11801208 CCAGACCGAGTGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACTCGGCCGATCTCCGGCT
387 CCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC-CCGCCGATC-CCGGCT
* * * * * *
11801273 TGCACATCCTGCCCCTCTGGCTGGCTGAG-GGCCACACGCTTGTTTCGTGGGTTGACTTAGGCAT
450 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
11801337 ACGAAGTTCATTCCCAGTCTAAGCATAGGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAG
515 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAG
**
11801402 GGTTGTTGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-T--TC---G---C
580 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * * * *
11801458 --CG--GG-GCATCGTCGGAGAACCTGACAGACGGCATTCGGGTTTCGACGATCGAGGGGGCCGA
645 ATCGCTGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG
* * *
11801518 GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGAACTTAGCCCTTATATTGGCCCCCTATCCC
710 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
11801583 TCAGCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
775 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
11801648 TAGCCAATAAAGTGTCTG-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
840 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
11801702 GTACACTTCAATTTTTTAGCTGCATTTTTTTGTGCATGCCAACAAAAATACAAGGATC-CTGTCT
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCT
*
11801766 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
65 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* * *
11801831 -AAAATCATGAAAAATTAAAAAATGAGTCGTCTTGCCATGGAAACTTCACGTGAAGGCTTTAGGG
130 AAAAATCATGAAAAA-TAGAAAACGAGTCGTCTTGCCAT-GAAACTTCACGTGAAGGCTTAAGGG
* ** *
11801895 ACCATTGTATGAATTTAGAAGCCAT-AAAATGGCATTGGCACACAGAAATATGAAGATGGTAACC
193 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT-GT-GCC
*
11801959 TAAACCCACCTACCAACCCTATTCGATCCACGGGCTTGCGCATCGCGTCTCTCTGGCCGACGTAG
256 TAAACCCACCTACC-ACCCTA-TCGATCCAC-GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* *
11802024 TGCCCTCCCACCCGTTCCGCTCGTCTTCGTCGGTTGGCTTAGGGCATACGGAGTTCATTCCCAGT
318 TG----CCCGCCCG-CCCGCTCGT-TTCGTCGGTTGGCTTA-GGCATACGGAGTTCATTCCCAGT
* ** * * * * * *
11802089 CTAAGATCAGACTGGACCAAGGGTTGTGGTACCAAGATCGGCAGTACGTAGAGGGGGACCCGACC
376 CTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-CC
* * * *
11802154 GATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGGCCGCACGCTCGTTTCATGGGTT
440 GAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
11802219 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAACATCCG
504 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
11802284 ACCGGACCGAGGGTTGCGACAGCACTTGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTC
569 ACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * ** * *
11802349 ATCGAGGCACCATCG-TCGGAGCATC-ACTAGAGAACCTGACCGACGATATTGGGGTTCTGGTGA
634 GTCGGGGCACCATCGCT-GGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGA
*
11802412 TCGGGGGGGCCGGACGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTA
697 TCGGGGGGG-C---CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
11802477 TATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCAC-TCCCCTTAAAGAGCATTTGAGATTT
758 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
11802541 TACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
823 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
11802606 AAATCTT
888 AAATCTT
* * *
11802613 GTACACTACGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTCGTCTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * * * * *
11802678 ACAAGTGTGGGGCCAAAAATCCTT-CGAAAAAAATTTAAAAAATCTCAAACCGTAAAAAGTTTTA
66 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* *
11802742 AAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACC
131 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
11802807 ATTGTATGAATCTACAAAG-CATTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
196 ATTGTATGAATTTAC-AAGCCA-TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
** * *
11802871 ACCCACCTACCACCCTATCGATCCATAGCTTACGCATCCCGTCTTTCTGGCCGACGTAGTGATCG
259 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-T-G
*
11802936 CCCGCCCGCCCGCCCATTCATGTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
320 CCCGCCCGCCCG--C--TCGT-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
11803000 GATCGAACCAGATCGAGGGTTGTGGCAACAGGATTGGTAGCACGCAGAGGGGGACCTGGCCGATC
380 GATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC-CGCCGATC
* * * * * *
11803065 CTTGGCTTGTGCATCCTGTCCCTCTGGCCGACTGAGCGCCCGCACGCTCGATTCGTGGGTTGACT
444 C-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * *
11803130 TAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCA
508 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* ** *
11803195 GACTGAAGGTTGCGTTAGGACATGCTGGG-TCGGGCATGTGCTGGTG-CGCATTTTTCTTCGTCG
573 GACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * ** *
11803258 GGGCACCATCGTCGGGAAATTGTCGGAGCATTGTCGGAGAACCTAACCGACGGCATTCAGGTCCC
638 GGGCACCATCG-C---------T-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * * *
11803323 GACGATC-GGGGCGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTAGCCCTT
692 GGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
11803387 ATATTTGCCCTCTATCCCTCAGCAAACCTCGATAACTCACACCCCCTTAAAGAGCATTTGAGATT
757 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
11803452 TTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTG-AATGGGGACACTTTTTTCAAA-GGTCAC
822 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
11803515 AAAATCTT
887 AAAATCTT
* * *
11803523 TTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AACAAATACAAGGATCCCGTCT
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA-AAATACAAGGATCACGTCT
* * * *
11803587 A-C----TTGGGGCCAAAACTCCTTCCCAAAAAATTTTCAAAAATCCTGAACTGCAAAAAGTTTC
65 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* *
11803647 AAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
130 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
11803712 CATTGTATGAATTTAGAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAA
195 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* *
11803777 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCTC
260 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * *
11803842 CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCG
325 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * * ** *
11803907 GATCGAGGGTTGCGGTAGCAGGATCGGTAGCACATAGAGGGGGACCCGACCGATCCCCGACTTGC
390 GACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-CCGAT-CCCGGCTTGC
* * * *
11803972 GCATCCTGCCCCTCTGGCAGGCTAAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
453 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
11804037 GAGTTCATTGCCAGTCTAA-CAT-C--CG---A----C---C----A---GA-C---C-GAGGGT
518 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGT
* **
11804076 TGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGATGCATTTTTCTTCGTCGGGGCACCATC
583 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * *
11804141 -ATCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGAC
648 GCT-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-C---C
*
11804205 GGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
708 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
** *
11804270 CCTCATCAAACCTTAAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
773 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
11804335 AGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCCTT
838 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-CTT
11804392 GTACACTAT-GAGTTTTTAGGCTTGAATTTTTTTGTG-ATGCC-AC------A-AA--A--A---
1 GTACACT-TCGAGTTTTTA-GC-TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
11804440 -TA-CAAGTTTGGGGCCAAAA-TCCTTTCTAAAAAATTTTAAAAAATCTCGAAGCCGCAAAAA-T
63 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA-CCGCAAAAAGT
*
11804501 TTC-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGA
127 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
11804565 GACCATTGTATGAATCTACAAG-CATTAAAAATGGGCATTGGCAT-CAGAAATCATGAAGATGTT
192 GACCATTGTATGAATTTACAAGCCA-TAAAAAT-GGCATTGGCATGCAGAAAT-ATGAAGATG-T
* * * ** *
11804628 GCCTAAATCGATCTACCACCCTATCGATCCATAAGCTTTGCGCATCCCGTCTCTCTGGCCGGCGT
253 GCCTAAACCCACCTACCACCCTATCGATCCA-CGGC-TTGCGCATCCCGTCTCTCTGGCCGACGT
11804693 AGCTGATCGCCCGCCCGCCGCCCGCTAGGTCGTTTCGTCGCGTTGGCTCTAGGCATACGGAGTTC
316 A---G-T-GCCCG--C-CCGCCCGC----TCGTTTCGTCG-GTTGGCT-TAGGCATACGGAGTTC
*
11804758 ATTCCCTGTCTAAG
367 ATTCCCAGTCTAAG
11804772 CATATGAAGT
Statistics
Matches: 8850, Mismatches: 1027, Indels: 581
0.85 0.10 0.06
Matches are distributed among these distances:
854 3 0.00
855 2 0.00
856 92 0.01
857 162 0.02
858 63 0.01
859 9 0.00
860 39 0.00
862 90 0.01
863 526 0.06
864 96 0.01
865 25 0.00
866 50 0.01
867 197 0.02
868 70 0.01
869 70 0.01
870 79 0.01
871 356 0.04
872 44 0.00
873 52 0.01
874 50 0.01
875 15 0.00
876 28 0.00
877 5 0.00
878 4 0.00
879 9 0.00
881 5 0.00
882 17 0.00
883 234 0.03
884 226 0.03
885 116 0.01
886 453 0.05
887 40 0.00
888 156 0.02
889 120 0.01
890 80 0.01
891 238 0.03
892 618 0.07
893 406 0.05
894 411 0.05
895 415 0.05
896 841 0.10
897 268 0.03
898 132 0.01
899 127 0.01
900 10 0.00
901 10 0.00
902 34 0.00
903 2 0.00
904 468 0.05
905 143 0.02
906 166 0.02
907 257 0.03
908 22 0.00
909 66 0.01
910 188 0.02
911 344 0.04
912 58 0.01
914 1 0.00
915 5 0.00
916 36 0.00
917 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGCCGATCCCGGCTTGCGCA
TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGC
GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT
GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
Found at i:11799601 original size:26 final size:26
Alignment explanation
Indices: 11799572--11799624 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11799562 GTTGACATAG
*
11799572 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
11799598 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
11799624 G
1 G
11799625 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:11800471 original size:26 final size:26
Alignment explanation
Indices: 11800435--11800487 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11800425 GTTGACTTAG
11800435 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11800461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11800487 G
1 G
11800488 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11802256 original size:26 final size:26
Alignment explanation
Indices: 11802226--11802277 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11802216 GTTGACTTAG
11802226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11802252 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11802278 CATCCGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11803170 original size:26 final size:26
Alignment explanation
Indices: 11803133--11803185 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11803123 GTTGACTTAG
* *
11803133 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11803159 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11803185 G
1 G
11803186 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11805672 original size:27 final size:25
Alignment explanation
Indices: 11805641--11805695 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 25
11805631 TAGGCATTAT
11805641 GGAG-TTCATTTCCCAGTCTAAGCATAC
1 GGAGTTTCA-TTCCCAG-CTAAG-ATAC
*
11805668 GGAGTTTCATTCCCAGGTAAGATAC
1 GGAGTTTCATTCCCAGCTAAGATAC
11805693 GGA
1 GGA
11805696 CCAAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 7 0.27
26 4 0.15
27 11 0.42
28 4 0.15
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (25 bp):
GGAGTTTCATTCCCAGCTAAGATAC
Found at i:11806877 original size:903 final size:897
Alignment explanation
Indices: 11804722--11811672 Score: 8654
Period size: 903 Copynumber: 7.8 Consensus size: 897
11804712 GCCCGCTAGG
* * * * *
11804722 TCGTTTCGTCGCGTTGGCTCTAGGCATACGGAGTTCATTCCCTGTCTAAGCATATGAAGTTCATT
1 TCGTTTCGT-GGGTTGACT-TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
*** ** *
11804787 CCCAGTCTAAGATCGGATATGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTTCTGG
64 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * ** *
11804852 TGCTGCATTTTTCTTCGCCAGGGCACCATCGTC--A--A-------ACAACCAAACCGATGGCAT
129 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCAT
* *
11804906 TCGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
194 TGGGGTTCCGGCGATC-GGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
11804971 TTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
257 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
** *
11805036 TTTGAGATTTTACAGGTTTTTTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
322 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
11805101 AATGGTCACAAAATCTTTTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATTCCAAAAAAAA
387 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAA
* * * * **
11805166 TTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAGTTTTG
452 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTTCA
* * * ** * *
11805231 ATCCGCAAAAATTTTTGAAAATCGTGAAAAATAG---A--AGTCGTCTTGCCATTAAACTTCACG
517 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
11805291 TGAAGGCTTAAGGGTCCATTTTATGAATTTACAAGCCATAAAAATGGCATTGCCACACAGAAATA
582 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
* * *
11805356 TGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCATGGCTTGCCGCATCCCGTCTCTCTA
647 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-CGCATCCCGTCTCTCTG
* * * * *
11805421 GTC-GCGATAGCGCCCG-CCCGCCGTCTCGCTGCCCATTTCGTCGCGTTGGCTTAGGCATAC-GA
711 GCCGGCG-TAGTGCCCGCCCCGCC--CGCACT--CGA-TTCGTCG-GTTGGCTTAGGCATACGGA
* * * **
11805483 ATGT-ATTCCCAGTCTAGGATCAGACCGGACTGA-GGTTGCGGTAGTC-GGATCGATAGCATTGC
769 GT-TCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAG-CAGGATCGGCAGCA-TGC
* * * * * ** *
11805545 AGAGGCGGCGACTCGACCAATCCCTGGC-TGCGCAT-GCGCCCCTTTGGCTGGCTGAGTGCCCAC
831 AGAGG-GG-GACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
11805608 ACG-
894 ACGC
* *
11805611 TCGTTTTCATGGGTTTGACTTAGGCATTATGGAGTTCATTTCCCAGTCTAAGCATACGGAGTTTC
1 TCG-TTTCGTGGG-TTGACTTAGGCA-TACGGAGTTCA-TTCCCAGTCTAAGCATACGGAG-TTC
* * * * * * *
11805676 ATTCCCAG-GTAAGATACGGACCAAGACCGACGATTGCGGTAGCACATGCTTGGCTTGGGCATGG
61 ATTCCCAGTCTAAGAT-CGGACC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT-G
* * ** *
11805740 TGCTTGTGGCTGCC-CATTTTTTTTTCGTCGAGGCACCATCACCGGAGCATCACCGGAGAACCTG
123 TGC---TGG-TGCCGCA-TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* **
11805804 ACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTCTGCGCACATGATGTATGATG
183 ACCGACGGCATTGGGGTTCCGGCGATC-GGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATG
* * *
11805869 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTTGAGAACTCACACCTC
246 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
11805934 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
311 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
11805999 CACTTTCTTCAAATGGTCACATAATCTTGTACACTTCAAGTTTTCAGCTGAATTTTTTTATGCAT
376 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
* * * * * *
11806064 GCCAAGAAAATTACAAGGATCACGTGTACCAAGTTTGGGCCCAAGACTCCTTCCGAAAAAATTTA
441 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
*
11806129 AAAAAATATCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
506 AAAAAATTTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
11806194 GAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGC
571 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
11806259 ACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTAGCGATCCACGGCTTGCGCATCC
636 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
11806324 CATCTTTTTGGCCGGC-TCAGTGCCCGCCCGTCGACCCGAACACTCGATTCGTCGGTTGGCTTAG
701 CGTCTCTCTGGCCGGCGT-AGTGCCCGCCC--CG-CCCG--CACTCGATTCGTCGGTTGGCTTAG
* * * * * * *
11806388 GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCGA-GGTTGCGGAAGCAAGATTGGCA
760 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
11806452 GCATGCAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGTCCCTCTGGCCGACTGAGCAC
825 GCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
11806517 CCGCACGC
890 CCGCACGC
* * *
11806525 TCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCACTCCCAGTCTAAGCATACGAAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* *
11806590 CAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
11806655 CCGCTTTTTTCTTCATCGGGGCTCCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTG
131 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
*
11806720 GGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT
196 GGGTTCCGGCGATC-GGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
11806785 GGCCCTTATATTGGCCCCCTATCCCTTATCAATCCTCGAGAACTCACACCCCCTTACAGAGCATT
259 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
11806850 TGAGGTTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
324 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
11806915 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
389 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATA
* * * *
11806980 CAAGGATCACGTTTACCAAGTTTGGGGACAAAACTCCTTCTGAAAAAATTTTAAAAAGTTTCGAA
454 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTTC-AA
* * * * *
11807045 A-CGCAAAAAGTTTTAAAATTCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCTCGT
518 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
**
11807109 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
583 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* ** **
11807174 GAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCTTGTCTCTCTAAC
648 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
11807239 CGACGTAGTGCCCGCCCTCCCGGCCGTCCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTC
713 CGGCGTAGTGCCCG--C-CCCGCCCG--CACTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** * *
11807304 ATTCCCAGTCTAAGATCGGATAGGACCGAGGGTTGCGGCAGCGGGATCGGCAGCATGCAGAGGGG
773 ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGG
* * * * ** * * *
11807369 GACCCGGCCAATCCCCGGCTTGCGCATCCCGCACCAATGGCCAGTTGAGCACCCGTACGC
838 GACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC
* *
11807429 TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *** * *
11807494 CAATCTAAGATCGAATCGGACCGAGGGTTGCGGCAGCACATGCTAAACTTGGGCATGTGCTAGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
11807559 TCACATTTTTCTTCGTCAGTG---CA-C--C--AGCATCGTCGGAGAACCTGACCG-CGGCATTG
131 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
* * * *
11807615 GGGTTTCGGCGATCGGGGGGCTGGGGGGTGTACGCACATGATGTGCGATGGGTACTGGTACTTGG
196 GGGTTCCGGCGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
11807680 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTTAAGAGCATTTG
261 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
11807745 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCT-AAATCGGGACACTTTTTTCAAAT
326 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTTTTTTCAAAT
* * * * * *
11807809 -GTCACAAAATATTATGCACTTCGAGTTTTTAGCTGAATTTTTTTTTAC-TAACCAACAAAAATA
390 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT-GCCAACAAAAATA
* * * **
11807872 CAAGGATCATGGCTACCAAGTTTGGGGCCAAAAGTCCTTCCGAAAAAA-TTTAAAAAATTTGGAA
454 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTTCAAA
* ** * *
11807936 TCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTG
519 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * * *
11808001 AAGGCTTAAGGGACCATCGTATCAATTTCCAAGCCATAAAAAATGGCATTGGCTCACAAAAATAT
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACACAGAAATAT
* * * * *
11808066 GAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCTGTATCTCTGGC
648 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * *
11808131 CGGCGTAGTGCTCG-CCCGCACAC-CTGCTCGTTTCGTCGATTGACTTAGGCATACGGAGTTCAT
713 CGGCGTAGTGCCCGCCCCGC-C-CGC-ACTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** *
11808194 TCCCAGTCTAAGATCAGACTGAACTGAGGGTTGTAGCTA-CAGGATCGGCAGCACGCAGAGGGGG
775 TCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGC-AGCAGGATCGGCAGCATGCAGAGGGGG
* * * *
11808258 ACCCGACCGATCCCTGGCTTGCGCATCCCGACCCTCTGGTCGGCTGAGCGCCCACACG-
839 ACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC
* * *
11808316 -C---T--T--GTT---TT--G--T--GG-G----TT--GAGT-TAGGCTTACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* *
11808356 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
11808421 CTGCATTTTT-TTCGTCGGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGGCGGCATTG
131 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
* * * * *
11808484 GGGTTCGGGCGATCGGGGGCCCGAGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTG
196 GGGTTCCGGCGATCGGGGG-GCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
11808549 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTT
260 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
11808614 GAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATAGGGAAACTTTTTTCAAAT
325 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
11808679 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA-AAAAATAC
390 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
* * * * * **
11808743 AGGGATCACATCTGCCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCAAAC
455 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTTCAAAC
* *
11808808 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGA
520 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
11808873 AGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACACAGAAATATAA
585 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* * *
11808938 AGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTACGCATCCCGTCTCTCTGGCCG
650 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * * *
11809003 GTGTGGTGCCC-ACCCGCACG--CTCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCAATCCCA
715 GCGTAGTGCCCGCCCCGCCCGCACTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * * **
11809065 GTCTAAGATCAGATCAGACTGAGGGTTATGGTAGCAGCATCGGCAGCACACAGAGGGGGACCC-A
780 GTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGA
* * *
11809129 GCCGATCCCTGACTTGCACATCCCGCCCCTCAGGCCGGCTGAGCACCCGTC-CGC
845 -CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG-CACGC
11809183 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
11809233 C-G----A-AT-----CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
** * ** * * * * **
11809287 TTGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCACCAGATAACCTGATCGGTGGCATTG
131 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
* *
11809352 GGGTTCCGGCGATCGGGGGGCCGGGGGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
196 GGGTTCCGGCGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
11809417 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTG
261 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * *
11809482 AGATTTTACAGGTTTGCTGCCATTAGCTATTAAAGTGTCTAAAATGAGGACACTTTTTTCAAATG
326 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
11809547 G-CAACAAAATCTTGTACACTTTGAGTTTTTAGCT-AATTTTTTTGTGCATGCCAAAAAAAATAC
391 GTC-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
* * * * *
11809610 AAGGATCACGTCTACCAAGGTTGGGGCCAAAGCTCCTTCC-AAAAAATTTTAAAAAATCTCGAAT
455 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTTCAAAC
* * * * * *
11809674 CGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGGGTCATTTTGCCACGAAACTTCACATGA
520 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
11809739 AGGCTTAGGGGACCATTGTATCAATTTATAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
585 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
*
11809804 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCG
650 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
11809869 GCGTAGTGCCTG-CCTG-CC-CACTCG-TTCCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCC
715 GCGTAGTGCCCGCCCCGCCCGCACTCGATT-CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * ** * * *
11809930 AGTATAAGATCGGACCAAACTGAGGTTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
779 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCG
* ** * * * * *
11809995 GCCGATCCCCAGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCAGCAAGC
844 ACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC
* *
11810049 TCGTTTCGTGGGTTAACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *** * * **
11810114 CAATCTAAGATCGGACCGGACCGAGGGTTACGTTGGCACATACTGGGTTCGGTAATGTGCTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * **
11810179 CTGTATTTTTCTTCGTCGGGGCACTATCATCGGAGCATTGCCGGAGAACCTGACCGGTGGCATT-
131 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
* * *
11810243 GGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTAG
196 GGGTTCCGGCGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
11810308 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
261 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
11810373 AGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAAT
326 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAAT
* *
11810437 GGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGA-GCATGCCAACAAAAACA
390 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-ATGCATGCCAACAAAAATA
* * * **
11810501 CAAGGATCATGTATACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAA
454 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTTCAAA
* *
11810566 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGTGTCGTCTTGCCATGAAACTTCACGTG
519 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
**
11810631 -AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
11810695 AAGATGTGCCTAAA-CCAGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
649 AAGATGTGCCTAAACCCA-CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* *
11810759 CGGCGTAGTGCCCG-CCCGCCCGC-TTGGTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
713 CGGCGTAGTGCCCGCCCCGCCCGCACTCG--A-TTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * ** * *
11810822 TCCAAGTCTAAGATTTGACCAGACCAAGGGTTGTGGCAGCAGGATCGGTAGCATGCAGAGGGGGA
775 TCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGA
* * * * * **
11810887 CCCGATCGATCCCTGGCTTGCACATCCTGCCCCTCTGGCCGGTTGAGCACCCGTAATC
840 CCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC
* *
11810945 TCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
** * * * * * *
11811010 CAGTCTAAGATCATATCGAATCGAGGGTTGCGGCAGCACATGCTGGTCCCGGGCATGTGTTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
11811075 CCGCATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCACCGGAGAACCTGATCGACGGCATTG
131 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
* * * *
11811140 GGGTTCTGGCGATCGGGGGGCCGGGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACCTGG
196 GGGTTCCGGCGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
11811205 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGT-ACACCCCCTTAAAGAGCATTT
261 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC-TCACACCCCCTTAAAGAGCATTT
* *
11811269 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTATAGTGTCTGAAATGGGGACATTTTTTTCAAAT
325 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
11811334 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAACAA
390 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAC
* * * ** *
11811399 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCTGAAAAAATTTTAAAAATTTTGGAAT
455 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTTCAAAC
* *
11811464 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGA
520 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
11811529 AGGCTTAAAGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
585 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* * * *
11811594 AGATGTGCCTAAACCCACCTACGACCCTATCCATCCATGGCTTGTGCATCCCGTCTCTCTGGCCG
650 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
11811659 GCTTAGTGCTCGCC
715 GCGTAGTGCCCGCC
11811673 TGATGGTTAC
Statistics
Matches: 5280, Mismatches: 624, Indels: 306
0.85 0.10 0.05
Matches are distributed among these distances:
861 8 0.00
862 81 0.02
863 3 0.00
864 2 0.00
865 9 0.00
866 591 0.11
867 262 0.05
868 56 0.01
869 35 0.01
870 310 0.06
871 156 0.03
872 5 0.00
873 1 0.00
874 1 0.00
875 5 0.00
876 3 0.00
877 1 0.00
878 3 0.00
879 5 0.00
880 2 0.00
881 2 0.00
882 1 0.00
883 3 0.00
884 2 0.00
885 1 0.00
886 3 0.00
887 4 0.00
888 136 0.03
889 15 0.00
890 25 0.00
891 345 0.07
892 494 0.09
893 272 0.05
894 12 0.00
895 21 0.00
896 316 0.06
897 364 0.07
898 155 0.03
899 4 0.00
900 2 0.00
901 2 0.00
902 1 0.00
903 601 0.11
904 220 0.04
905 1 0.00
906 2 0.00
907 4 0.00
908 33 0.01
909 352 0.07
910 26 0.00
911 26 0.00
912 23 0.00
913 78 0.01
914 185 0.04
915 3 0.00
916 2 0.00
917 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
GGGTTCCGGCGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTTCAAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
CGTAGTGCCCGCCCCGCCCGCACTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGAC
CGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC
Found at i:11807479 original size:26 final size:26
Alignment explanation
Indices: 11807450--11807502 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11807440 GTTGACTTAG
* *
11807450 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11807476 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11807502 G
1 G
11807503 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11809588 original size:866 final size:869
Alignment explanation
Indices: 11804779--11815441 Score: 8165
Period size: 903 Copynumber: 12.1 Consensus size: 869
11804769 AAGCATATGA
** **
11804779 AGTTCATTCCCAGTCTAAGATCG-GATATGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * * *
11804843 ATGTTCTGGTGCTGCATTTTTCTTCGCCAGGGCACCATCGTC-AAACA--ACC--A-AACC-GA-
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
* * * *
11804900 ---TGGCATTCGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGG
131 CGGCGGCATTGGGGTTCCGGCGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
11804962 TGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
** *
11805027 TAAAGAGCATTTGAGATTTTACAGGTTTTTTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
11805092 CTTTTTTCAAATGGTCACAAAATCTTTTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATTC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
11805157 CAAAAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *** * * * ** * *
11805222 AAAGTTTTGATCCGCAAAAATTTTTGAAAATCGTGAAAAATAG---A--AGTCGTCTTGCCATTA
454 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
11805282 AACTTCACGTGAAGGCTTAAGGGTCCATTTTATGAATTTACAAGCCATAAAAATGGCATTGCCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
11805347 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCATGGCTTGCCGCATCCC
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-CGCATCCC
* * * *
11805412 GTCTCTCTAGTCGCG-ATAGCGCCCGCCCGC-CGTCTCGCTGCCCATTTCGTCGCGTTGGCTTAG
648 GTCTCTCTGGCCG-GTGTAGTGCCCGCCCGCACG-CT--C-G----TTTCGTCG-GTTGGCTTAG
* * * *
11805475 GCATAC-GAATGT-ATTCCCAGTCTAGGATCAGACCGGACTGA-GGTTGCGGTAGTC-GGATCGA
703 GCATACGGAGT-TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAG-CAGGATCGG
* * * * * * *
11805536 TAGCATTGCAGAGGCGGCGACTCGACCAATCCCTGGC-TGCGCAT-GCGCCCCTTTGGCTGGCTG
766 CAGCA-CGCAGAGG-GG-GACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * * *
11805599 AGTGCCCACACG-TCGTTTTCATGGGTTTGACTTAGGCATTATGG
828 AGCACCCGCACGCTCG-TTTCGTGGG-TTGACTTAGGCA-TACGG
11805643 AGTTCATTTCCCAGTCTAAGCATACGGAGTTTCATTCCCAGGTAAGATACGGACCAAGACCGACG
1 AGTTCA-TTCCCAG--T---C-TA---AG----A-T--C--G--AGAT-CGGACC--GA--G--G
* * * * * *
11805708 ATTGCGGTAGCACATGCTTGGCTTGGGCATGGTGCTTGTGGCTGCC-CATTTTTTTTTCGTCGAG
38 GTTGCGGCAGCACATGCTGGGCTCGGGCAT-GTGC---TGG-TGCCGCA-TTTTTCTTCGTCGGG
* *
11805772 GCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
97 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGG
* ** *
11805837 GCCGGGGGGGTCTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCC
161 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
11805902 ATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
225 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
11805967 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACATAATCTTGTACA
290 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * *
11806032 CTTCAAGTTTTCAGCTGAATTTTTTTATGCATGCCAAGAAAATTACAAGGATCACGTGTACCAAG
355 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * ** *
11806097 TTTGGGCCCAAGACTCCTTCCGAAAAAATTTAAAAAAATATCAAACCGTAAAAAGTTTCAAAAAT
420 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
11806162 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGT
485 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
11806227 ATGAATTTACAAGCCATAAAAATGGCATTCGCACGCAGAAATATGAAGATGTACCTAAACCCACC
550 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
11806292 TACCACCCTAGCGATCCACGGCTTGCGCATCCCATCTTTTTGGCCGGCT-CAGTGCCCGCCCGTC
615 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG-TGTAGTGCCCGCCCG-C
* * *
11806356 GACCCGAACACTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGA
678 -A--CG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * * * *
11806421 TCGGACCGA-GGTTGCGGAAGCAAGATTGGCAGCATGCAAAGGGGGACCCGATCGATCCCCGGCT
736 CCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCT
* * *
11806485 TGCGCATCTCGTCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
801 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
11806550 ATGG
866 ACGG
*
11806554 AGTTCACTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
1 AGTTCATTCCCAG--T---C-T---AAG---A-T--C-G----AGAT-----CGGACCGAGGGTT
* * * * *
11806619 GCAGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCTTTTTTCTTCATCGGGGCTCCATCG
41 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * * *
11806684 TCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGG
106 CCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGG-CCGGGGG
* *
11806749 GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTAT
169 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * *
11806814 CAATCCTCGAGAACTCACACCCCCTTACAGAGCATTTGAGGTTTTACAGGTTTGCTACCAGTAGC
234 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
11806879 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
299 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
11806944 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGAC
364 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * ** * * * *
11807009 AAAACTCCTTCTGAAAAAATTTTAAAAAGTTTCGAAACGCAAAAAGTTTTAAAATTCATGAAAAA
429 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* *
11807074 TAGAAAACGAGTTGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTA
494 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
11807139 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCT
559 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
** ** **
11807204 ATCGATCCACGGCTTGCGCATCTTGTCTCTCTAACCGACGTAGTGCCCGCCCTCCCGGC-CGTCC
624 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCG----CCC-GCACG---
* * * *
11807268 ACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGA-TAGGACCG
681 -CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACTG
* * * * * *
11807332 AGGGTTGCGGCAGCGGGATCGGCAGCATGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATC
744 AGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATC
* ** * * * *
11807397 CCGCACCAATGGCCAGTTGAGCACCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGG
809 CCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
11807458 AGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCGGACCGAGGGTT
1 AGTTCATTCCCAG--T---C-TA---AG----------ATC---GA--G-ATCGGACCGAGGGTT
*** * * * * * *
11807523 GCGGCAGCACATGCTAAACTTGGGCATGTGCTAGTGTCACATTTTTCTTCGTCAGTG---CA---
41 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
** * *
11807582 CC--AGCATCGTCGGAGAACCTGACC-GCGGCATTGGGGTTTCGGCGATCGGGGGGCTGGGGGGT
106 CCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGT
* *
11807644 GTACGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
171 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
11807709 AACCTCAAGAACTCACACCCCCTTTAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
236 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
11807774 TTAAAGTGTCCT-AAATCGGGACACTTTTTTCAAAT-GTCACAAAATATTATGCACTTCGAGTTT
301 TTAAAGTGT-CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * *
11807837 TTAGCTGAATTTTTTTTTAC-TAACCAACAAAAATACAAGGATCATGGCTACCAAGTTTGGGGCC
365 TTAGCTGAATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *** * **
11807901 AAAAGTCCTTCCGAAAAAA-TTTAAAAAATTTGGAATCGTAAAAAGTTTCAAAAATTGTGAAAAA
429 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* * * * *
11807965 TAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATCGTATCAATTTC
494 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
11808030 CAAGCCATAAAAAATGGCATTGGCTCACAAAAATATGAAGTTGTGCCTAAACCCACCTACCACCC
559 CAAGCCAT-AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * *
11808095 TATCGATCCATGGCTTACGCATCCTGTATCTCTGGCCGGCGTAGTGCTCGCCCGCACACCTGCTC
623 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCG--CA-C-GCTC
* * *
11808160 GTTTCGTCGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGAACTGAGGG
684 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGG
* *
11808224 TTGTAGCTA-CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCG
748 TTG-CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCG
* * * * * * * *
11808288 ACCCTCTGGTCGGCTGAGCGCCCACACGCTTGTTTTGTGGGTTGAGTTAGGCTTACGG
812 CCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
11808346 AGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
11808410 ATGTGCTGGTGCTGCATTTTT-TTCGTCGGGGCACCATCGCCGGAGCATC-GCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
* * * *
11808473 CGGCGGCATTGGGGTTCGGGCGATCGGGGGCCCGAGGGGGTGTACGCACATGATGTGTGATGGGT
131 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGT
* *
11808538 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
11808603 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATAGGGAAAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
11808668 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
11808733 AA-AAAAATACAGGGATCACATCTGCCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
11808797 AAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
11808862 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACA
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
11808927 CAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTACGCATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
11808992 CTCTCTGGCCGGTGTGGTGCCCACCCGCACGCTCGTTTCGTCGGTTGGCTTAAGCATACGGAGTT
650 CTCTCTGGCCGGTGTAGTGCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** * *
11809057 CAATCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGGTAGCAGCATCGGCAGCACACAGAGGG
715 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGG
* * *
11809122 GGACCC-AGCCGATCCCTGACTTGCACATCCCGCCCCTCAGGCCGGCTGAGCACCCGTC-CGCTC
780 GGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG-CACGCTC
11809185 GTTTCGTGGGTTGACTTAGGCATACGG
843 GTTTCGTGGGTTGACTTAGGCATACGG
11809212 AGTTCATTCCCAGTCTAAGATCGA-ATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * * * * *
11809276 ATGTGCTGGTGTTGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCACCAGATAACCTGAT
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
* *
11809341 CGGTGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGCGCGCACATGATGTGCGATGGGTG
131 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
11809406 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
11809471 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCTATTAAAGTGTCTAAAATGAGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
11809536 TTTTTCAAATGG-CAACAAAATCTTGTACACTTTGAGTTTTTAGCT-AATTTTTTTGTGCATGCC
326 TTTTTCAAATGGTC-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
11809599 AAAAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAGCTCCTTCC-AAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * * * *
11809663 AAATCTCGAATCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGGGTCATTTTGCCACGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * *
11809728 ACTTCACATGAAGGCTTAGGGGACCATTGTATCAATTTATAAGCCATAAAAATGGCATTGGCACA
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
11809793 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * * *
11809858 CTCTCTGGCCGGCGTAGTGCCTGCCTGCCCACTCGTTCCGTCAGTTGGCTTAGGCATACGGAGTT
650 CTCTCTGGCCGGTGTAGTGCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
11809923 CATTCCCAGTATAAGATCGGACCAAACTGAGGTTTGTGGCAGCAGGATCGGCAGCACGCAGAGGG
715 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGG
* ** * * * * *
11809988 GGACCCGGCCGATCCCCAGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCAGCAAGCTCGT
780 GGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGT
* *
11810053 TTCGTGGGTTAACTTAGGCAAACGG
845 TTCGTGGGTTGACTTAGGCATACGG
11810078 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTT
1 AGTTCATTCCCAGTCTAAG-AT-C---G---------------AGAT-----CGGACCGAGGGTT
* *** * * ** * * * *
11810143 ACGTTGGCACATACTGGGTTCGGTAATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACTATCA
41 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* ** *
11810208 TCGGAGCATTGCCGGAGAACCTGACCGGTGGCATT-GGGTTCCGGCGATCGGGGGGCCGGGGGGT
106 CCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGT
* *
11810272 GTGCACACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCA
171 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
11810337 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
236 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
11810402 TTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTT
301 TTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * *
11810466 TTAGCTGAATTTTTTTGAGCATGCCAACAAAAACACAAGGATCATGTATACAAAGTTTGGGGCCA
365 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* *
11810531 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
430 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
*
11810596 AGAAAACGTGTCGTCTTGCCATGAAACTTCACGTG-AGGCTTAAGGGACCATTGTATGAATTTAC
495 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
11810660 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCAGCCTACCACCCT
560 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA-CCTACCACCCT
* * *
11810724 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGGTCA
624 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCACGC----TCG
* ** **
11810789 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATTTGACCAGACCAAGGGTT
685 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* * * * * * *
11810854 GTGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCACATCCTGCCC
750 GCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCC
* * ** * *
11810919 CTCTGGCCGGTTGAGCACCCGTAATCTCATTTCGTGAGTTGACTTAGGCATACGG
815 CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
11810974 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCATATCGAATCGAGGGTT
1 AGTTCATTCCCAGTCTAAG-AT-C-GAG---A-T--C-G-----G-----A-C----CGAGGGTT
* * * *
11811039 GCGGCAGCACATGCTGGTCCCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTG
41 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * *
11811104 TCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGT
106 CCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGT
* *
11811169 GGGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCA
171 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
11811234 AACCTCGAGAACGT-ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
236 AACCTCGAGAAC-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
11811298 ATTATAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
300 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
11811363 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAACAAAAGGATCACGTCTACCAAGTTTGGGGCCA
365 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *** * *
11811428 AAACTCATTCTGAAAAAATTTTAAAAATTTTGGAATCGTAAAAAGTTTCAAAAATCGTGAAAAAT
430 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* * *
11811493 AGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATCGTATGAATTTAC
495 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
11811558 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTA
560 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * *
11811623 TCCATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGCT-TAGTGCTCGCCTG-A---TGGTTAC
625 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG-TGTAGTGCCCGCCCGCACGCTCGTTTC
* ** * * * * * *** *
11811683 GGCAATAGGATCA-ACAGCACGCAGAGGGGGA--CCC-GATC---GATC--CCCA-AC------T
689 GTCGGTTGGCTTAGGCA-TACG--GA-GTTCATTCCCAG-TCTAAGATCAGACCAGACTGAGGGT
* **** * * * * ** **
11811732 T---GT-GC---ATC-TCA-C-C-C--TTCTGG--CCGGCTGAGCACCT-GCATGTTCATTTCG-
749 TGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC-CCTGGCTTGCGCATCCCGC
* **** ** * ** **** * * * *
11811780 -----T-G--GGTTGA-CTTAGGCA-TATGGATTTAAT--TCCAATC-TAAGAACACAG
813 CCCTCTGGCCGGCTGAGCACCCGCACGCTCG-TTTCGTGGGTTGA-CTTAGGCATACGG
* *
11811826 AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCACATGCTGGGCT-CGG--
1 AGTTCATTCCCAGTCT-A-A---GATCG-A--GA----T-CGG-A-C-C--G-AGGGTTGCGGCA
** * **** * * * * **** * * * * *
11811888 GCATGTGTTGGTGACGTATTTTTCTTCGT-CGGGGTGCCATCGTCAGAGCATCGCCAGAGAACC-
47 GCACATGCTGG-G-C---TCGGGCAT-GTGC-TGGTGCC-GCAT-TTTTCTTCGTCGGGGCACCA
** * * * * * *
11811951 T-GACC--AGCGAT-AGTGG-GATTCC-GA-CGATCGG----GGGGTT-CGGGGGT-GGTGTGCG
103 TCG-CCGGAGC-ATCACCGGAGA-ACCTGACCG-GCGGCATTGGGGTTCCGGCGATCGGGGGGC-
**** * ** * ** ** * * **
11812003 CACATGATGTGCG-ATGTG-TGCTG-GTACTTGGCCCTTATA-TTGTCCCCCTATCCCTCATCAA
163 CGGGGGGTGTGCGCACATGATG-TGCG-A-TGGGTGCTGGTACTTG--GCCCT-T--AT-AT-TG
* * * * * * * * ** ** *** ***
11812064 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTCCTGCCAGTAGC-TAT
218 GCC-C----CCT-A-TCCCTCATCAA-A-C-CTCGAGAACTCACA-CCCCCTTAAAG-AGCAT-T
* * * * *** ** * * *** ** ** *
11812128 T-AAAGTGT-CTGAAATGGGGACACT--TTTTTCAAACG-GTCACAAAATCTTGTACACATCGAG
270 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAA-GTGTC-TGAAAT-GGGGACAC-T----
* * ****** **** * * * * ** * *** *
11812188 TTTTTAGCGGAATGTTTTTGTGCATGCCAAAAAAATACAAG-GATCACGTCT-ACCATGTTTG-G
326 TTTTT--C-AAATG-GTCACAAAAT-CTTGTACACTTCGAGTTTTTA-G-CTGAATTTTTTTGTG
* * ** ** * ** * * *
11812250 ---GGC--CAAAACT-C---CTTC-CG---AAAAAATTT----TAAAAAATCCTGAACTGCAAAA
384 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT--TCCG-AAAA
* * ** *** ** **** *** **
11812298 AGTTTT-GAAAATCATGAAAAATAGAAAACGAGTC-GTCTTGCCATGAACCTTCACGTGAAGGCT
446 AATTTTAAAAAATCCCGAACCGTA-AAAA-GTTTCAAAAAT--CATGAAAAAT-A---GAAAAC-
* * * * * * * * * **
11812361 TAAG-GGACTAATG-TATG-AA-TTTAC---AAGCCATAAAAATGG--CATTGGCATGCAGAAAT
502 -GAGTCGTCT--TGCCATGAAACTTCACGTGAAGGC-T--TAAGGGACCATT-GTATG-A-ATTT
* *** ** ** * ** * *** ** * * *
11812417 ATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGAT-CCACAGCT-TGCGC--ATCTCGTCT
558 A-CAAGCCAT--AAAAATGGCA-TTGGCACGC-AGAAATATGA-AGATGTGC-CTAAAC-C--CA
* * * * * * * **
11812477 CTCTGGCCGA-CGTAGT-G-CCCGATC-GCTCGCCCGTCGCTCGTTTCGTC-GGTTGGCT-TAG-
613 C-CT-ACC-ACCCTA-TCGATCC-A-CGGCTTGCGCATC-C-CGTCTC-TCTGGCCGG-TGTAGT
*** * * * * * * * * * * **
11812535 G-CATACAG-A-G-T-TTATTCCT-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGT---AG-C
668 GCCCGCCCGCACGCTCGT-TTCGTCGGT-T-GGCTTAG-GCATA-CG-GAGTT-CATTCCCAGTC
** * * * *
11812590 -AAGATCAG--CAGCAC-GTAGAGG--G-GG-A-CCCGATC-G-ATC-C-CTG-GCTTGCGCATC
726 TAAGATCAGACCAG-ACTG-AG-GGTTGCGGTAGCAGGATCGGCAGCACGCAGAG---GGGGA-C
* * * * ** * * ** *
11812641 CCGGCC-CTCTGGCTGGC-TGAGCA-CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGA
784 CCGACCGATC--CCTGGCTTGCGCATCCCGC-C-C-C---TC-T-GGCCGGCTGA-GCACCCGCA
* * *** * *
11812703 -GTTC-ATTC-CCAG-T--C-TAAGCATATGG
838 CGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** * * ** **
11812728 AGTTCATTTGCAGTCTAAGATC-AG-GCTGGACCGAGGGTTTCGATAGCACATGCTGGGCTCAAG
1 AGTTCATTCCCAGTCTAAGATCGAGATC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * *
11812791 CATCTGTTGGAGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCAGGAGAACCTGA
65 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
* * * ** * * * *
11812856 CCGACGGCATTGGGTTTTCGATGATCGGGGGGCCGGGGGGGGTCTACGCACATGATGCGCGGTGG
130 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGG
* *
11812921 GTACTGGTACTTGGCCCTTATATTGGCCCCACTATCCCTGATCAAACCTCGAGAACTCACACCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCC-CTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
11812986 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGTGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
** * *
11813051 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTAAGAGTTTTTAGTTG-AGTTTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
11813115 GCCAACAAAAATACAGGGATCACATCTACCAAG-TTGGGGCCAAAACTCCTTCCGAAAAAATTTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** * *
11813179 AAAAAATCTCAAACCGT-AAAAGTTT-TGAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCAT
452 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
11813242 GAAACTTTACGTGAAGGCTTAGGGGACCATTCTATG-ATTTACAAGCCATAAAAATGGAATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * **
11813306 ACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATACACATCTTGCGCATCC
582 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * ** *
11813371 CGTCTCTCTGGCCGGCGCTGTGCCCGCTCGTCCGCCCGCCCGCTCATTTTATCGGTTGGGTTAGG
647 CGTCTCTCTGGCC-G-G-TGT---AG-T-GCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGG
* * * ** *
11813436 CATACGAAGTTCATTCCCAGTCTAAGATCAGA-CTGCACCGAGGGTTGCGGTAGCAAAATCGGTA
704 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGTAGCAGGATCGGCA
* *** * *
11813500 GCACGCAGAGGGGGACCCGACCAATCCCCATCTTGCACATCCCGCCCCTCTGGTCGGCTGAGCAC
768 GCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * *
11813565 CCGCACACTTGTTTCGTAGGTTGACTTAGGCATACAG
833 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
11813602 AGTTGATTCCCAGTCTAAGGATACGAAGTTTATTCCCAGTCTAAGATCGGATCGGACCAAGGGTT
1 AGTTCATTCCCAGTCTAA-GAT-CG-AG---A-T--C-G-----GA-C----C-G----AGGGTT
* * * *
11813667 GCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCAGCATTTTTCTTCG-CTGGGGCACCATC
41 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATC
* * * *
11813731 GCCGGAGCATCACTGGAGAACCTAACCGGCGACATTGGGGTTCCGACGATCGGGGAGGACCGGGG
105 GCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG-GG-CC-GGG
* *
11813796 GGGTGTGTGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
167 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * * *
11813861 ATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAAGTTTGCTACTAGTA
232 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
11813926 GCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACATT-GA
297 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGA
11813989 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
361 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
** *
11814054 GATAAAACTCCTTCC-AAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
426 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
*
11814118 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAT
491 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
11814183 TTACAAGCCATAAAAATGGCATTGACATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
556 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
*
11814248 CCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT-GCCTGCCCGCCCGCCCG
621 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG--T-GTAG--T----GCCCGCCCG
* * * **
11814312 CCCGCTCGTTTCGTCGATTGGCTTAGGCATATGGAGTTCATT-CCAGTCTAAGATCAGACTGGAC
677 CACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * * ** * * **
11814376 TGAGGGTTACAGCAGCAGCATCGACAGCATGTAGAGGTAGACCTGACCGATCCCCGGCTTATGCA
742 TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCA
* * * * *
11814441 TCCCACCCCTCTAGCCAGCTGAGCACCTGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGG
807 TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
11814504 AGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAATATCGGACCAGACTGAGGGTT
1 AGTTCATTCCCAGTCTAAG-AT-C---G---------AG------ATCGGA-C---C-GAGGGTT
* * * * * ** * *
11814569 ACGACAGCACATGCTGGGCTCGAGTATGTGTTGGTGCCGCATTTTTCTTCACCGGTGCACCATCA
41 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * ** **
11814634 CCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGA-CCAGGGGCCGGGGGGT
106 CCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGT
11814698 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
171 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
11814763 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAA
236 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
11814828 TTAAAGTGTCTGAAATGGGGACACTTTTTCCAAGTGGTCACAATATCTTGTACACTTCGAATTTT
301 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * **
11814893 TATCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAATTTGGATCCAA
366 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * **
11814957 AAGTCCTTCCAAAAAAATTTTAAAAAATTCCGAACTGCAAAAAGTTTTGAAAATCATGAAAAATA
431 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
*
11815022 GAAAACGAGTCGTCTTGCCATGAACCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
496 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** **
11815087 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCTGCCTACCACCCTAT
561 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
11815152 CGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCG-CC-CA--CTCGTTTTGT
626 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCACGCTCGTTTCGT
* * * *
11815213 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGAGTGAGGGTTGGGGCA
691 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTA
* * * * * * * *
11815278 GCAGGATCGGTAGCACGCAAAGGGGGACTCGACTGATCCCCGACTTACGTATCCCGCCCCTCTGG
756 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG
** * **
11815343 CCAACAGAGCACCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGG
821 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** * **
11815392 AGTTCATTCCCAGTCTAAGCATATAGACCGGACCGAGGGTTATGGCAGCA
1 AGTTCATTCCCAGTCTAAG-ATCGAGATCGGACCGAGGGTTGCGGCAGCA
11815442 GGATCAGCAG
Statistics
Matches: 7879, Mismatches: 1366, Indels: 1108
0.76 0.13 0.11
Matches are distributed among these distances:
840 3 0.00
841 13 0.00
842 18 0.00
843 19 0.00
844 1 0.00
845 5 0.00
846 10 0.00
847 9 0.00
848 12 0.00
849 12 0.00
850 5 0.00
851 17 0.00
852 24 0.00
853 18 0.00
854 25 0.00
855 27 0.00
856 19 0.00
857 22 0.00
858 44 0.01
859 24 0.00
860 20 0.00
861 29 0.00
862 82 0.01
863 20 0.00
864 66 0.01
865 41 0.01
866 664 0.08
867 310 0.04
868 102 0.01
869 90 0.01
870 348 0.04
871 185 0.02
872 27 0.00
873 30 0.00
874 45 0.01
875 34 0.00
876 31 0.00
877 11 0.00
878 20 0.00
879 18 0.00
880 13 0.00
881 11 0.00
882 17 0.00
883 9 0.00
884 2 0.00
885 18 0.00
886 17 0.00
887 54 0.01
888 333 0.04
889 26 0.00
890 25 0.00
891 334 0.04
892 488 0.06
893 265 0.03
894 12 0.00
895 24 0.00
896 295 0.04
897 368 0.05
898 368 0.05
899 295 0.04
900 277 0.04
901 96 0.01
902 334 0.04
903 745 0.09
904 195 0.02
905 8 0.00
906 3 0.00
907 17 0.00
908 32 0.00
909 334 0.04
910 27 0.00
911 27 0.00
912 26 0.00
913 87 0.01
914 188 0.02
915 1 0.00
916 2 0.00
918 3 0.00
919 1 0.00
921 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (869 bp):
AGTTCATTCCCAGTCTAAGATCGAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGTGTAGTGCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGG
GACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGG
Found at i:11811002 original size:26 final size:26
Alignment explanation
Indices: 11810966--11811018 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11810956 GTTGACTTAG
11810966 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11810992 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11811018 G
1 G
11811019 ATCATATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11812724 original size:26 final size:26
Alignment explanation
Indices: 11812694--11812746 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11812684 GTTGACTTAG
11812694 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* **
11812720 GCATATGGAGTTCATTTGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11812746 G
1 G
11812747 ATCAGGCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11814533 original size:26 final size:26
Alignment explanation
Indices: 11814496--11814547 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11814486 GTTGACTTAG
* *
11814496 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11814522 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11814548 TATCGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11815151 original size:899 final size:900
Alignment explanation
Indices: 11811689--11820035 Score: 6499
Period size: 902 Copynumber: 9.2 Consensus size: 900
11811679 TTACGGCAAT
* ** * * * *
11811689 AGGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCAACTTGTGCATCTCACCCTTCTGGCC
1 AGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * * * *
11811754 GGCTGAGCACCTGCATGTTCATTTCGTGGGTTGACTTAGGCATATGGATTTAATT-CCAATCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11811818 GAACAC-AGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCACATGCTGG
131 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** * * *
11811882 GCTCGGGCATGTGTTGGTGACGTATTTTTCTTCGTCGGGGTGCCATCGTCAGAGCATCGCCAGAG
195 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAG
** * * *
11811947 AACCTGACC-AGCGATAGTGGGATTCCGACGATCGGGGGGTTCGGGGGTGGTGTGCGCACATGAT
260 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGG--CCGGGG-GGTGTGCGCACATGAT
* *
11812011 GTGCGATGTGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACT
321 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
11812076 CACACCCCCTTAAAGAGCATTTGAGATTTTTCAGG-TTCCTGCCAGTAGCTATTAAAGTGTCTGA
386 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
11812140 AATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACATCGAGTTTTTAGCGGAATGTTT
451 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTT
* *
11812205 TTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAA
515 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
*
11812269 AAAATTTTAAAAAA-TCCTGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
580 AAAATTTTAAAAAATTCC-GAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCG
* * *
11812333 TCTTGCCATGAACCTTCACGTGAAGGCTTAAGGGACTAATGTATGAATTTACAAGCCATAAAAAT
644 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** *
11812398 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
709 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** * * *
11812463 TGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGATCGCTCGCCCG-TCGCTCGTTTCGTCGGT
774 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGT
* * * *
11812527 TGGCTTAGGCATACAGAGTTTATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGC
839 TGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
* * * *
11812590 AAGATC-AGCAGCACGTAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGGCCCTCTGGC
1 AGGATCGA-CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
11812654 TGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
65 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * * **
11812719 AGCATATGGAGTTCATTTGCAGTCTAAGATCAGG-CTGGACCGAGGGTTTCGATAGCACATGCTG
130 AGCATACGAAGTTCATTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGCGGCAGCACATGCTG
** * * ** *
11812783 GGCTCAAGCATCTGTTGGAGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCAGGA
194 GGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGA
* * * * *
11812848 GAACCTGACCGACGGCATTGGGTTTTCGATGATCGGGGGGCCGGGGGGGGTCTACGCACATGATG
259 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATG
* * * *
11812913 CGCGGTGGGTACTGGTACTTGGCCCTTATATTGGCCCCACTATCCCTGATCAAACCTCGAGAACT
322 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-CTATCCCTCATCAAACCTCGAGAACT
*
11812978 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGA
386 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* ** * *
11813043 AATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTAAGAGTTTTTAGTTGAGTTTTT
451 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
11813108 TGTGCATGCCAACAAAAATACAGGGATCACATCTACCAAG-TTGGGGCCAAAACTCCTTCCGAAA
516 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * * *
11813172 AAATTTTAAAAAA-TCTCAAACCG-TAAAAGTTTTG-AAATCGTGAAAAATAAAAAACGAGTCGT
581 AAATTTTAAAAAATTC-CGAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
11813234 CTTGCCATGAAACTTTACGTGAAGGCTTAGGGGACCATTCTATG-ATTTACAAGCCATAAAAATG
645 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * **
11813298 GAATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATACACATCTT
710 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
11813363 GCGCATCCCGTCTCTCTGGCCGGCGCT-GTGCCCGCTCGTCCGCCCGCCCGCTCATTTTATCGGT
775 GCGCATCCCGTCTCTCTGGCCGGCG-TAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGT
* * * * *
11813427 TGGGTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CTGCACCGAGGGTTGCGGTAGC
839 TGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGC
** ** * * ** * *
11813490 AAAATCGGTAGCACGCAGAGGGGGACCCGACCAATCCCCATCTTGCACATCCCGCCCCTCTGGTC
1 AGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
11813555 GGCTGAGCACCCGCACACTTGTTTCGTAGGTTGACTTAGGCATACAGAGTTGATTCCCAGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11813620 GGATACGAAGTTTATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGACAGCACATGCTGGG
131 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11813685 CTCGAGCATGTGTTGGTGCAGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACTGGAGA
196 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
11813750 ACCTAACCGGCGACATTGGGGTTCCGACGATCGGGGAGGACCGGGGGGGTGTGTGCACATGATGT
261 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GG-CC-GGGGGGTGTGCGCACATGATGT
* *
11813815 GCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
323 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
11813880 CACCCCCTCAAAGAGCATTTGAGATTTTACAAGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAA
388 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
11813945 TGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACATT-GAGTTTTTAGCTGAATTTTTT
453 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAA-TTTTT
**
11814008 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGATAAAACTCCTTCCAAAA
516 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * *
11814073 AAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
581 AAATTTTAAAAAATTCCGAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
11814137 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
646 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** *
11814202 CATTGACATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
711 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
11814267 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTG
776 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
* ** * *
11814332 GCTTAGGCATATGGAGTTCATTCCAGTCTAAGATCAGACTGGACTGAGGGTTACAGCAGC
841 GCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
* * * ** * * ** * *
11814392 AGCATCGACAGCATGTAGAGGTAGACCTGACCGATCCCCGGCTTATGCATCCCACCCCTCTAGCC
1 AGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
11814457 AGCTGAGCACCTGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11814522 GCATACGAAGTTCATTCCCAGTCTAATATCGGACCAGACTGAGGGTTACGACAGCACATGCTGGG
131 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11814587 CTCGAGTATGTGTTGGTGCCGCATTTTTCTTCACCGGTGCACCATCACCGGAGCATCGCCGGAGA
196 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* **
11814652 ACCTGACCGACGGCATTGGGGTTCCGATGA-CCAGGGGCCGGGGGGTGTGCGCACATGATGTGCG
261 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
11814716 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
326 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
11814781 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
391 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * * *
11814846 GGACACTTTTTCCAAGTGGTCACAATATCTTGTACACTTCGAATTTTTATCTGAATTTTTTATGC
456 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGC
* * ** *
11814911 ATGCCAACAAAAATACAAGGATCATGTCTACCAAATTTGGATCCAAAAGTCCTTCCAAAAAAATT
521 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
*
11814976 TTAAAAAATTCCGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
586 TTAAAAAATTCCGAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
11815041 ATGAACCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
651 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
**
11815106 GCACATAGAAATATGAAGATGTGCCTAAACCTGCCTACCACCCTATCGATCCACGGCTTGCGCAT
716 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * **
11815171 CCCGTCTCTCTAGTCGGCGTA--G--T--------GCCCGCCCACTCGTTTTGTCGGTTGGCTTA
781 CCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
* * *
11815224 GGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGAGTGAGGGTTGGGGCAGC
846 GGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
** * * * * *
11815280 AGGATCGGTAGCACGCAAAGGGGGACTCGA-CTGATCCCCGACTTACGTATCCCGCCCCTCTGGC
1 AGGATCGACAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
** * **
11815344 CAACAGAGCACCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
65 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** *** * ** * * * * * * * * *
11815409 AGCATA--TAGACCGGACCGAGGGT--TAT-GGCAGCAGGATCAGCAGCACGTAGAGG-GGGACC
130 AGCATACGAAGTTCATTCCCAGTCTAAGATCGG-A-CCGGA-CCG-AG--GGTTGCGGCAGCACA
* * ** * * * * ** * * * * *
11815468 CGGTCGATCCTC-GGCTTGTGTAT-CTCGCC-CCTCTGGC--CGACTGAGCACCCACACGCTCGT
189 TGCT-G-GGCTCGGGCATGTGT-TGGT-GCCGCATTTTTCTTCGCCGGGGCA-CCA-TCGC-CGG
** * * *** ** * * *** * * * ** * ***
11815528 TTCGTGGGTTGACTTACGCAT-ACGGA-GTTCATTCCCAG--CCTAAGATTGGATCAGACAAAGG
247 AGCATCGCCGGA-GAAC-C-TGACCGACG-GCATT-GGGGTTCCGACGATCGG--GGGGCCGGGG
* * * * * * ** * * *
11815589 GTTGCGGCAGCACATGCTG-GCCTCGA-GCATGTGTTGGT-CTT-ACATTTTTCTTCGCCGGGGC
305 GGTG-TGC-GCACATGATGTG---CGATG--GGTGCTGGTACTTGGCCCTTATATTGGCC----C
* ** * * ** **** ** **
11815650 ACC-ACCGCCGGAGC-ATCGCAGGAGAACCTGACTGACGGTATTGGGCTTCCA-A-CGATCGGAG
359 -CCTATC-CCTCATCAAAC-CTCGAGAA-CT--C--AC---A-CCCCCTTAAAGAGC-ATTTGA-
*** **** * * * **** * * ** *
11815711 GGGCTGGGGGGTGTGC-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
410 GATTTTACAGGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-GT-C-T-G-----AAATGGGGACA
** **** ** * * * * *
11815775 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAG-GTT
461 CT-T---TTTTCAAA--T-G-G---TCACAAAATCTTGTACA-C-TTCGAGTTTTTAGCTGAATT
** * ** ** * * * ** * *
11815838 TGCTG-CCAGTAGCCATTAAAGTGTCTAAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAA
513 TTTTGTGCA-T-GCCAACAAA---AATACAA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA
* *** ** **** ** ** ** * *
11815898 -TCTTGTACGCCTCAAGTTTTTAGCTGATTTTTTTTTGTGCATGCCAAAAAAAATAC-AAGGATC
569 CTCCT-T-C-CAAAAAAATTTTA----A-AAAATTCCGAAC-TG-C-AAAAAGTTTCGAA-AATC
* ** * ** * *** ** *
11815961 ACGTCTACCAATTTTGGGGCCAAAA--A-TC--CTT-CCAAAAAAACTTTA-AAAAATCCTGAAC
622 A--T-GA--AA-AAT--AG--AAAACGAGTCGTCTTGCC-ATGAAACTTCACGTGAAGGCTTAA-
** ** ** * * * *
11816019 CGCAAAAAGTT-TCAAAAAATTGTGA-AA--AATAGAAAACGAGTCGTCTTGC-CAT-GAAACT-
675 -GGGACCA-TTGT--ATGAATT-T-ACAAGCCATA-AAAATG-G-CAT-TGGCACATAGAAA-TA
* * * * * ** *** ** *
11816077 TCACG-TGAAGGCTTAAGGGA-CCATCGTATGAATTTA-CAAGCCATAAAAATGGCATTG-GCA-
729 TGAAGATG--TGCCTAA---ACCCA-CCTACCACCCTATC--G--AT--CCACGGC-TTGCGCAT
* *** * ** * *** * *
11816137 CACAG-AAATATGAAGATGTGCCTAAACCCACTTACCAC-CCTATCGATCCACGGCTTGCGCATC
781 C-CCGTCTCTCTG--GCCG-GCGT-AGTGC-C-TGCC-CGCC---CG--CC-C-GC--CCGC-T-
* * ** ** ** * * * * * *
11816200 CCGTCTCTCTAGCCGGCGTAGTGC-CCGCCCGCCCACCTGCCTGCTCGTTTC-GTCGGTTAGCTT
827 -CGT-T-TC-A-TC-G-GTTG-GCTTAG---GCATA-C-G-GAGTTCATTCCAGTC--TAAGATC
* * * ** * *
11816263 AG-GCATACGGA-ATTCATTC-CCAGTC
876 AGACCAGACTGAGGGT--TGCGGCAG-C
* * * * * * * *** * * *
11816288 TAAGATCAAACCGGAC-C-GAGGGTTG--CGGTAGTAGGATTGGCAGCATGTAGAGGGGGA-CCC
1 -AGGATC-GACAGCACGCAGAGGG-GGACCCG-A-T-CGATCCCCGGC-T-T----GCGCATCCC
** * ** * * * ** * *
11816348 GGCCAATC---CTCGGCTTGCGCATCCC-C-C-CTC-TGAC-CGGCTGAGCACCCGCACGCTCGT
54 -GCCCCTCTGGC-CGGC-TGAGCA-CCCGCACGCTCGTTTCGTGGGT-TG-A--CTTA-G-GC-A
* * *
11816405 TTCGTGGGGTTGACTTCGACATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
108 TAC--GGAGTTCA-TTC--C---C--AG-TC----------TAAGCATACGAAGTTCATTCCCAG
** * * * * *
11816470 TCTAAGATTAGACCGAATCGAGGGTTGCGGCAGCACATGCTAGGCTCGGACATTTGTTGGTGCCG
152 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG
* * * * * ** *
11816535 TATTTTTCTTCGTCGGGGCACCATCACCGGCGGATCATCGGAGAACCTTACC-AGCGGCATTGGG
217 CATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGG
* * **
11816599 GTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGCGCTTGG
281 GTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
11816664 -CCTTATATTGGCCCCCTATCCCTCATCTAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
344 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
11816728 AGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
409 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
11816793 GTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTCATGCCAACAAAAATTCA
474 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACA
* * * * *
11816858 AGGATCACGTCAACCAAGTTTGGGGCCAAAACTACTTTCGAAAAAGTTTTAAAAAA-TCCTGAAC
538 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATTCC-GAAC
* * * * *
11816922 T-CTAAAAGGTTTCAAAAAACGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTG
602 TGC-AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
11816986 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
666 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
** * *
11817051 AAGATGTGCCTAAACCTGCCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTATGGCC
731 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* ** *
11817116 GGCATAGTGCCTGCCCGCATGCCCG-CCGACTCTTTTCATCGGTTGGCTTAGGCATACGGAGTTC
796 GGCGTAGTGCCTGCCCGCCCGCCCGCCCG-CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* ** * *
11817180 ATTCCCAGTCTAAGTTTGGACCAGACCGATGGTTGCGGCAGC
860 ATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
* * * * ** *
11817222 AGGATC-AGCAGCACGTAGAGGGGGACCCGGTTGATCCCCAGCTTGCGCATCGTGCCCTTCTGGC
1 AGGATCGA-CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
11817286 CAGTTGAGCACCCGCACGTTCGTTTCGT--G--G-C-T-----T---GA---C-TT---AG----
65 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
*
11817326 -GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGG
130 AGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
11817390 GCTCGGGCATGTGTTGGTGCTGTATTTTTCTTCGCTGGGGCACCAT---C---G--T---CGAAG
195 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAG
* *
11817444 AACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGCCGTGGGGGTGTGCGCACATGATGTG
260 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * *
11817509 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCAAGAACT-AG
324 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-
* *
11817573 CA-CCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTGAAA
388 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
11817637 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTG
453 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTG
* * * * * *
11817702 TGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGACTAAAAATCCTTCTAAAAAA
518 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * * *
11817767 AGTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATGGACAACGAGTCGTCTT
583 ATTTTAAAAAATTCCGAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
11817832 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCA
648 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
11817897 TTGGCA-AGTAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGGTTGC
713 TTGGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
11817961 GCATCTCGTCTCTCTGGTCGACGTA--G--TGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGG
777 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGG
* * * * *
11818022 CTTAGGCATAC-GAGGTCATTCCCAATCTAAGATCAGGCCAGACCGAGGGTTGCGGCAAC
842 CTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
* * * * *
11818081 AGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTTTGGCT
1 AGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
11818146 GGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11818211 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTAGG
131 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
11818276 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCGCCGGAGA
196 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
11818341 ACCT--------G-A-------T-CGACGATCGGGGGG-CAGGGGGTGTGCACACATGATGTGCG
261 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
11818388 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
326 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
11818453 CCCTTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
391 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
11818518 GGACACTTTTTTCAAATGGTCACTAAATCTAGTACTCTTCGAGTTTTTAGCTGAATTTTTTTGTG
456 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTG
* * * * *
11818583 CATGCCAAAAAAAATACAAGGATCACATCTACCAAGGTTGGGGCCTAAACTCCTTCGAAAAAAAA
520 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAAA
* * * *
11818648 TTTTAAAAAATCCCGAAC-GCAAAAAG-TTCTGTAAA-CTATGAAAAATAGAAAATGAGTCATCT
584 TTTTAAAAAATTCCGAACTGCAAAAAGTTTC-GAAAATC-ATGAAAAATAGAAAACGAGTCGTCT
*
11818710 TCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
647 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
11818775 ATTGGCATGC-T-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTCGATCCACGGCTT
712 ATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
11818838 GCGCATCCCGTCTCTCTAGTCGGTGTA--G--T----GCCCGCCCGCCCGCTCGTTTCATCGGTC
775 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTT
* ** * * *
11818895 GGCTTAGGCATACGGAGTTCATTCCTAGCCTAAGATTGGACCAGACTGAGAGTTGTGGCAGT
840 GGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
* * * * *
11818957 AGGATCGCCAGCATGCAGAGGGGGAACCGGTCGATCCCCGGCTTGCGCATCCCGCCACTCTGGCC
1 AGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
11819022 GACTGAGCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11819087 GCATATGGAGTTAATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGAACCGGAC
131 GC-----------A-T----A-C---G---A---AGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * *
11819152 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGGTGGTGTCGCATTTTTCTTTGCCGAGG
170 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGG
** * *
11819217 CACCATCGTTGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGC
235 CACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-
* *
11819282 CCAGGGGGTGTGCACACATGATGTGC-AGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
299 CCGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
11819346 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTGACAGGTTTGCTG
363 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
11819411 TCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACAC
428 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
11819476 TCCGAGTTTTTAGCTGAATTTTGTTGTGCATGCCAACAAAAACACAAGGATCGCGTCTACCAAGT
493 TTCGAGTTTTTAGCTGAATTTT-TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
11819541 TTGGGGCCAAAACTCCTTTCGAAAAAATTATAAAAAA-TCCTGAACGGCAAAAAGTTTCGAAAAT
557 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATTCC-GAACTGCAAAAAGTTTCGAAAAT
* * *
11819605 CGTGTAAAATAGAAAACGAGTCATCTTGCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
621 CATGAAAAATAGAAAACGAGTCGTCTTG-CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
11819670 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-T-GAAATATGAAGATGTGCCTAAAGCC
685 TATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCC
* * * *
11819733 ACCTACCACCCTCTCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGTGTA--G--T----G
748 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG
* * **
11819790 CCCGCCCGCCCGCTCGTTTCATCGGTCGGCTTAGGCATACGGAGTTCATTCCTAGCCTAAGATTG
813 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCA
* *
11819855 GACCAGACTGAGAGTTGTGGCAGC
877 GACCAGACTGAGGGTTGCGGCAGC
* * * * *
11819879 AGGATCGCCAGCATGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCACTCTGGCC
1 AGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
11819944 GACTGAGCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
66 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11820009 GCATATGGAGTTCATTCCCAGTCTAAG
131 GCATACGAAGTTCATTCCCAGTCTAAG
11820036 CATACGAAGT
Statistics
Matches: 5909, Mismatches: 1092, Indels: 895
0.75 0.14 0.11
Matches are distributed among these distances:
859 116 0.02
860 39 0.01
861 4 0.00
862 1 0.00
863 2 0.00
864 250 0.04
865 168 0.03
866 73 0.01
869 1 0.00
870 1 0.00
871 1 0.00
873 2 0.00
874 1 0.00
875 41 0.01
876 152 0.03
877 183 0.03
878 117 0.02
879 246 0.04
880 27 0.00
883 2 0.00
884 4 0.00
885 105 0.02
886 10 0.00
887 54 0.01
888 152 0.03
889 17 0.00
890 14 0.00
891 9 0.00
892 10 0.00
893 6 0.00
894 7 0.00
895 4 0.00
896 37 0.01
897 11 0.00
898 224 0.04
899 415 0.07
900 535 0.09
901 258 0.04
902 729 0.12
903 264 0.04
905 1 0.00
906 1 0.00
907 2 0.00
908 1 0.00
909 1 0.00
910 9 0.00
911 16 0.00
912 1 0.00
913 2 0.00
914 5 0.00
915 1 0.00
916 2 0.00
917 1 0.00
918 2 0.00
919 17 0.00
920 24 0.00
921 286 0.05
922 378 0.06
924 8 0.00
925 1 0.00
926 12 0.00
927 7 0.00
928 7 0.00
929 3 0.00
930 4 0.00
931 3 0.00
932 12 0.00
933 7 0.00
934 21 0.00
935 28 0.00
936 15 0.00
937 12 0.00
938 6 0.00
939 13 0.00
940 5 0.00
941 16 0.00
942 4 0.00
943 1 0.00
944 2 0.00
945 2 0.00
946 6 0.00
947 2 0.00
948 6 0.00
949 11 0.00
951 2 0.00
952 2 0.00
953 10 0.00
954 12 0.00
955 6 0.00
956 7 0.00
957 15 0.00
958 15 0.00
959 17 0.00
960 5 0.00
961 5 0.00
962 12 0.00
963 9 0.00
964 5 0.00
965 4 0.00
966 3 0.00
967 10 0.00
968 12 0.00
969 5 0.00
970 4 0.00
971 15 0.00
972 11 0.00
973 14 0.00
974 7 0.00
975 5 0.00
976 13 0.00
977 8 0.00
978 1 0.00
979 1 0.00
981 9 0.00
982 2 0.00
983 2 0.00
984 2 0.00
985 1 0.00
987 1 0.00
988 3 0.00
989 17 0.00
990 1 0.00
991 12 0.00
992 15 0.00
993 5 0.00
994 17 0.00
995 6 0.00
996 5 0.00
997 2 0.00
998 2 0.00
999 1 0.00
1000 1 0.00
1001 7 0.00
1002 4 0.00
1003 2 0.00
1004 1 0.00
1005 11 0.00
1006 5 0.00
1007 11 0.00
1008 19 0.00
1009 7 0.00
1010 9 0.00
1011 5 0.00
1012 5 0.00
1013 6 0.00
1014 4 0.00
1015 15 0.00
1016 12 0.00
1017 2 0.00
1018 15 0.00
1019 8 0.00
1020 7 0.00
1021 3 0.00
1022 2 0.00
1023 1 0.00
1024 123 0.02
1025 60 0.01
1026 60 0.01
1027 81 0.01
1028 49 0.01
1029 44 0.01
1030 57 0.01
1031 121 0.02
1032 150 0.03
1033 55 0.01
1034 97 0.02
1035 104 0.02
1036 101 0.02
1037 89 0.02
1038 158 0.03
1039 130 0.02
1040 85 0.01
1041 59 0.01
1042 40 0.01
1043 29 0.00
1044 30 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
AGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATTCCGAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
GGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
Found at i:11815516 original size:161 final size:159
Alignment explanation
Indices: 11815214--11815600 Score: 472
Period size: 161 Copynumber: 2.4 Consensus size: 159
11815204 TCGTTTTGTC
* ** *
11815214 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGAGTGAGGGTTGGGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTAGGGCAG
* * *
11815279 CAGGATCGGTAGCACGCAAAGGGGGACTCGACTGATCCCCGACTTACGTATCCCGCCCCTCTGGC
66 CAGGATCAGCAGCACGCAAAGGGGGACCCGACTGATCCCCGACTTACGTATCCCGCCCCTCTGGC
* *
11815344 CAACAGAGCACCCGCACGCTTATTTCGTG
131 CAACAGAGCACCCACACGCTCATTTCGTG
* *
11815373 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGACCGGACCGAGGGTTATGGC
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-TAGACCAGACCGAGGGTTAGGGC
* * * * * ** *
11815438 AGCAGGATCAGCAGCACGTAGAGGGGGACCCG-GTCGATCCTCGGCTTGTGTATCTCGCCCCTCT
64 AGCAGGATCAGCAGCACGCAAAGGGGGACCCGACT-GATCCCCGACTTACGTATCCCGCCCCTCT
* * *
11815502 GGCCGACTGAGCACCCACACGCTCGTTTCGTG
128 GGCCAACAGAGCACCCACACGCTCATTTCGTG
* * * * **
11815534 GGTTGACTTACGCATACGGAGTTCATTCCCAGCCTAAGATTGGATCAGACAAAGGGTT-GCGGCA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTAG-GGCA
11815598 GCA
65 GCA
11815601 CATGCTGGCC
Statistics
Matches: 194, Mismatches: 30, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
159 57 0.29
160 5 0.03
161 132 0.68
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.21
Consensus pattern (159 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTAGGGCAG
CAGGATCAGCAGCACGCAAAGGGGGACCCGACTGATCCCCGACTTACGTATCCCGCCCCTCTGGC
CAACAGAGCACCCACACGCTCATTTCGTG
Found at i:11818215 original size:26 final size:26
Alignment explanation
Indices: 11818185--11818237 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11818175 GTTGACTTAT
11818185 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11818211 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11818237 G
1 G
11818238 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11819097 original size:26 final size:26
Alignment explanation
Indices: 11819061--11819139 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
11819051 GTTGACTTAG
11819061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
11819087 GCATATGGAGTTAATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11819113 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11819139 G
1 G
11819140 ATCGAACCGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11820019 original size:26 final size:26
Alignment explanation
Indices: 11819983--11820061 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
11819973 GTTGACTTAG
11819983 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11820009 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11820035 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11820061 G
1 G
11820062 ATCGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.