Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 72 of 190
Found at i:11820144 original size:922 final size:901
Alignment explanation
Indices: 11818185--11820152 Score: 3199
Period size: 922 Copynumber: 2.2 Consensus size: 901
11818175 GTTGACTTAT
* * *
11818185 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT
1 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * *
11818250 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCG-TCGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGGTGGTGCCGCATTTTTCTTTGCT-GAG
* *
11818314 GCACCATCGCTAGAGCATCGCCGGAGAACCTGATCGACGATCGGGGGGCAGGGGGTGTGCACACA
130 GCACCATCGTTGGAGCATCGCCGGAGAACCTGATCGACGATCGGGGGGCAGGGGGTGTGCACACA
11818379 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
195 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
11818444 AACTCACACCCCTTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGT
260 AACTCACACCCCCTTAAAGAGCATTTCAGATTTGACAGGTTTGCTGCCAGTAGCAATTAAAGTGT
* * * *
11818509 CTGAAATGGGGACACTTTTTTCAAATGGTCACTAAATCTAGTACTCTTCGAGTTTTTAGCTGAAT
325 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTAGTACACTCCGAGTTTTTAGCTGAAT
* * *
11818574 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGGTTGGGGCCTAAACTCCTTC
390 TTTGTTGTGCATGCCAAAAAAAACACAAGGATCACATCTACCAAGGTTGGGGCCAAAACTCCTTC
* * *
11818639 GAAAAAAAATTTTAAAAAATCCCGAACGCAAAAAGTTCTGTAAACTATGAAAAATAGAAAATGAG
455 G-AAAAAAATTATAAAAAATCCCGAACGCAAAAAGTTCTGAAAACTATGAAAAATAGAAAACGAG
11818704 TCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
519 TCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
11818769 AATGGCATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTCGATCCACG
584 AATGGCATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTCGATCCACG
11818834 GCTTGCGCATCCCGTCTCTCTAGTCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTCGGCT
649 GCTTGCGCATCCCGTCTCTCTAGTCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTCGGCT
*
11818899 TAGGCATACGGAGTTCATTCCTAGCCTAAGATTGGACCAGACTGAGAGTTGTGGCAGTAGGATCG
714 TAGGCATACGGAGTTCATTCCTAGCCTAAGATTGGACCAGACTGAGAGTTGTGGCAGCAGGATCG
11818964 CCAGCATGCAGAGGGGGAACCGGTCGATCCCCGGCTTGCGCATCCCGCCACTCTGGCCGACTGAG
779 CCAGCATGCAGAGGGGGAACCGGTCGATCCCCGGCTTGCGCATCCCGCCACTCTGGCCGACTGAG
11819029 CACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11819087 GCATATGGAGTTAATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGAACCGGAC
1 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* *
11819152 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGGTGGTGTCGCATTTTTCTTTGCCGAGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGGTGGTGCCGCATTTTTCTTTGCTGAGG
*
11819217 CACCATCGTTGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGC
131 CACCATCGTTGGAGCATCGCCGGAGAACCT-------G--A-------T-CGACGATCGGGGGG-
11819282 CCAGGGGGTGTGCACACATGATGTGC-AGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
178 -CAGGGGGTGTGCACACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
11819346 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTGACAGGTTTGCTG
241 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTGACAGGTTTGCTG
* * *
11819411 TCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACAC
306 CCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTAGTACAC
* * * *
11819476 TCCGAGTTTTTAGCTGAATTTTGTTGTGCATGCCAACAAAAACACAAGGATCGCGTCTACCAAGT
371 TCCGAGTTTTTAGCTGAATTTTGTTGTGCATGCCAAAAAAAACACAAGGATCACATCTACCAAGG
*
11819541 TTGGGGCCAAAACTCCTTTCG-AAAAAATTATAAAAAATCCTGAACGGCAAAAAGTT-TCGAAAA
436 TTGGGGCCAAAACTCC-TTCGAAAAAAATTATAAAAAATCCCGAAC-GCAAAAAGTTCT-GAAAA
* *
11819604 -TCGTGTAAAATAGAAAACGAGTCATCTTGCCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
498 CT-ATGAAAAATAGAAAACGAGTCATCTT-CCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
11819668 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCTGAAATATGAAGATGTGCCTAAAGCC
561 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCTGAAATATGAAGATGTGCCTAAACCC
11819733 ACCTACCACCCTCTCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGTGTAGTGCCCGCCCG
626 ACCTACCACCCTCTCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGTGTAGTGCCCGCCCG
11819798 CCCGCTCGTTTCATCGGTCGGCTTAGGCATACGGAGTTCATTCCTAGCCTAAGATTGGACCAGAC
691 CCCGCTCGTTTCATCGGTCGGCTTAGGCATACGGAGTTCATTCCTAGCCTAAGATTGGACCAGAC
* *
11819863 TGAGAGTTGTGGCAGCAGGATCGCCAGCATGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCA
756 TGAGAGTTGTGGCAGCAGGATCGCCAGCATGCAGAGGGGGAACCGGTCGATCCCCGGCTTGCGCA
11819928 TCCCGCCACTCTGGCCGACTGAGCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
821 TCCCGCCACTCTGGCCGACTGAGCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
11819993 TTCATTCCCAGTCTAA
886 TTCATTCCCAGTCTAA
*
11820009 GCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * *
11820074 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGGTGGTGCCCCCTTTTTCTTTGCTGAGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGGTGGTGCCGCATTTTTCTTTGCTGAGG
11820139 CACCATCAGTTGGA
131 CACCATC-GTTGGA
11820153 TTAGGCATAC
Statistics
Matches: 983, Mismatches: 56, Indels: 33
0.92 0.05 0.03
Matches are distributed among these distances:
902 142 0.14
909 1 0.00
911 1 0.00
918 1 0.00
919 14 0.01
920 25 0.03
921 290 0.30
922 503 0.51
923 6 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (901 bp):
GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGGTGGTGCCGCATTTTTCTTTGCTGAGG
CACCATCGTTGGAGCATCGCCGGAGAACCTGATCGACGATCGGGGGGCAGGGGGTGTGCACACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTCAGATTTGACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTAGTACACTCCGAGTTTTTAGCTGAATT
TTGTTGTGCATGCCAAAAAAAACACAAGGATCACATCTACCAAGGTTGGGGCCAAAACTCCTTCG
AAAAAAATTATAAAAAATCCCGAACGCAAAAAGTTCTGAAAACTATGAAAAATAGAAAACGAGTC
ATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTCGATCCACGGC
TTGCGCATCCCGTCTCTCTAGTCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTCGGCTTA
GGCATACGGAGTTCATTCCTAGCCTAAGATTGGACCAGACTGAGAGTTGTGGCAGCAGGATCGCC
AGCATGCAGAGGGGGAACCGGTCGATCCCCGGCTTGCGCATCCCGCCACTCTGGCCGACTGAGCA
CCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11822115 original size:26 final size:26
Alignment explanation
Indices: 11822063--11822115 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11822053 GTTGACTTAG
* *
11822063 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
* *
11822089 GCATACGGAGTTGATTCCCATTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
11822115 G
1 G
11822116 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:11823313 original size:881 final size:873
Alignment explanation
Indices: 11820349--11823715 Score: 4181
Period size: 854 Copynumber: 3.9 Consensus size: 873
11820339 TAAGCATCCA
* * * * * *
11820349 GAGTTCATTTCCAG-CTAAGATC-GAATCGGACCGAGGGTTACGGCAGCACATGCTAGGCTCAGG
1 GAGTTCATTCCCAGTCTAAGATCGGACTAGGACCAAGGGTTGCGGCAGCACATGCTAGGCTCGGG
* * *
11820412 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCTCCATCGTCGGAGGATCGCCAGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC-GAGAACCTGA
* * * * * *
11820477 CTGGCGGCTTTGGGGTTCCGACGATCTGGGGGGCCGGGGGGTGTGCTCACATGATGTGCGTTGGG
130 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * ***
11820542 TGCGGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTTGGGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* * *
11820607 TAAAGAGCATTTGAGATTTTACAGGATTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
11820672 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGC
** * * ** *
11820737 CAACAAAAATACAAGGATCACGTCTATTAAGTTAGGGGCCAAAACGCCTTTTGAAAAATTTTTAA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
11820802 AAAATCTTGAACCGCAAAAAGTTTTG--AAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCAT
455 AAAATCTCGAACCGCAAAAA-TTTTGAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
**
11820865 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCATT-GC
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
11820929 A-AGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATC
584 ACA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
11820993 CTGCCTCTCTGGTCGACGTAGTG--C-CCGCCCGCCCACTCGTTTCATCGGTTGGATTAGGTATA
648 CCGTCTCTCTGGCCGACATAGTGCCCGCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATA
* * ** *
11821055 CGGAGTTCATTCCCAATCTTAGATTGGACCGGAC-GAGGGTTACAGCAGCAAGATCGAT-GACAC
713 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACAGCAGCAAGATCGGTAG-CAC
* ** *
11821118 GTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCTTCACTCTGGCCGACTGAGCGCCC-C
777 GCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGACCCTCTGGCCGACTGAGCGCCCGC
11821182 ACGCTCGTTTCGTGGGTTGACTTAGGCATACG
842 ACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * *
11821214 GAGTTCATTCCCAGTTTAAGATTGGACT-GGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCGGACTAGGACCAAGGGTTGCGGCAGCACATGCTAGGCTCGGG
* ** * * *
11821278 CATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCAT--T----GC--CA--TAGAACCTGAT
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAGAACCTGAC
* *
11821333 CGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGT-CGCACATGATGTGTGATGGGT
131 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
11821397 GCTGGTACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAACCTCAAGAACTTACACCCCCTT
196 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* *
11821462 AAAGAGCATTTGAGATTTTACAGGTTTACTGCCAATAGCAATTAAAGTGTCTGAAATGGGGACAC
261 AAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
11821527 TTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCC
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCC
* *
11821592 AAGAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AA
391 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * *
11821656 AAATC-CTGACCCGTAAAAAGTTT-CAAAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCATG
456 AAATCTC-GAACCGCAAAAATTTTGAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
11821719 AAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATACAAATGGCATTGGCA
520 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
11821784 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
585 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
11821849 GTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCG----CTCGTTTCATAGGTTGGGTTAGGCAAAC
650 GTCTCTCTGGCCGACATAGTGCCCGC-CGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * * * * * *
11821910 AGAGTTCATTCCCAGTCTAAGATCGGGCCGGAATGAGTGTTGCAGCATCAGGATCGGCAGCACGC
714 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACAGCAGCAAGATCGGTAGCACGC
* ** * * *
11821975 AGAGGGGGACCCGACCTATCCCCGGCTTGTGCATCCCGACCCTTTGGTCGGCTGAGCGCCCGCAC
779 AGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGACCCTCTGGCCGACTGAGCGCCCGCAC
11822040 GCTCGTTTCGTGGGTTGACTTAGGCATACG
844 GCTCGTTTCGTGGGTTGACTTAGGCATACG
*
11822070 TAGTTCATTCCCAGTCTAAGCATACGGAGTTGATTCCCATTATAAGATCAGACCAGACCGAGGGT
1 GAGTTCATTCCCAGTCTAAG-AT-C---G--GA----C----T-AG----GACC--A---AGGGT
* * * * * *
11822135 TGCAGCAGTACATGATAGGCTCGGGCAT-TGCTGGTGCCACATTTTTCTTTGTCGGTGCACCATC
41 TGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * * * * * *
11822199 GCCGGAGCATCGCCTGAGAACTTGACCGCCAGCATTGGGATTCAGGCGAACGGGGGGACCGGGGG
106 GTCGGAGCATCACC-GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * * * *
11822264 GTGTGCGCAAATGCTGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCTTCAT
170 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
11822329 CAAACCTCGAAGAACTCACA---CCTTAAAGAGCAATTTGAGATTTTACAAGGTTTACTGTCAGT
235 CAAACCTC-AAGAACTCACACCCCCTTAAAGAGC-ATTTGAGATTTTAC-AGGTTTACTGCCAGT
* *
11822391 AG-CATTAATGTGTCTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
297 AGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
11822455 AGTTTTTAGCTAAATTTTTTTGTTGCATGCC-AC-AAAACACAGGTGATCATGTCTACCAAGTTT
361 AGTTTTTAGCTAAATTTTTTTG-TGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTT
*
11822518 GGGGCCAAAACTCCTT-C-AAAAAATTTTTAAAAAATCTCGAACTGCAAAAATTTTGAAAAAATT
424 GGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCTCGAACCGCAAAAATTTTGAAAAAA-T
* *
11822581 CGT-AATAATATAGAAAATGGAGTCGTCTTGTCCATG-AACATCACGTGGAAGGCTTTAAGGGAC
487 CGTGAA-AA-ATAGAAAA-CGAGTCGTCTTG-CCATGAAACTTCACGT-GAAGGC-TTAAGGGAC
11822644 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
546 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
* *
11822709 CCCACTTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACATAGTGCCCGT
611 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCG-
* * *
11822774 CCGCCCGCTAGCCCACTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTAATTCCCAGTCTAAGA
675 CCG-CC-C--GCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* *
11822839 TCAGACCGGACTGAGGGTTAC-GACAGCAAGATCGGTAGCACGCAGAGGGGGACTCGGCCGATCC
736 TCAGACCGGACTGAGGGTTACAG-CAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCC
* * * *
11822903 CCGACTT-CACATCCCGCCCCTCTGGCCGACTTG-GCGCCCGCACACTCG-TTCTGTGGGTTGAC
800 CCGGCTTACGCATCCCGACCCTCTGGCCGAC-TGAGCGCCCGCACGCTCGTTTC-GTGGGTTGAC
* * *
11822965 ATGGGCTTACG
863 TTAGGCATACG
* * *
11822976 GAGTTCATTCCCAGTCTAAGATCGGACT-GGACCAAGGGTTGTGGCAGCACATTCTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCGGACTAGGACCAAGGGTTGCGGCAGCACATGCTAGGCTCGGG
* * *
11823040 TATGTGCTTGG-GCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCATCGGAGAACCTG
66 CATGTGC-TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA-CCGAGAACCTG
* * * *
11823104 ACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGTCGGGGGGTGTGCGCACATAATGTGCGATGG
129 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
11823169 GTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAATCCTCAAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* * *
11823234 TTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAT
259 TTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
11823299 ACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATG
*
11823364 CCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
389 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * ** * *
11823429 AAACATCCCGAACTTC--ACA---TG----AATCGTGAAAAATAGAAAACGAGTCGTCTTACCAT
454 AAAAATCTCGAACCGCAAAAATTTTGAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
11823485 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * *
11823550 ACGCACAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCC
584 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
11823615 CGTCT-TGTGGCCGATATAGTGCCCGCCCGCCCGCCC-GTCCGTTTCATCGGTTGGCTTAGGCAT
649 CGTCTCTCTGGCCGACATAGTGCCCG-CCGCCCGCCCACT-CGTTTCATCGGTTGGCTTAGGCAT
*
11823678 AC-GAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAG
712 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAG
11823716 CATTGCGGCA
Statistics
Matches: 2160, Mismatches: 247, Indels: 193
0.83 0.09 0.07
Matches are distributed among these distances:
852 3 0.00
853 110 0.05
854 384 0.18
855 121 0.06
856 53 0.02
857 3 0.00
858 7 0.00
860 1 0.00
861 1 0.00
862 35 0.02
863 30 0.01
864 1 0.00
865 14 0.01
866 74 0.03
867 24 0.01
868 112 0.05
869 11 0.01
870 18 0.01
871 9 0.00
872 6 0.00
873 5 0.00
877 6 0.00
880 47 0.02
881 288 0.13
882 84 0.04
883 17 0.01
885 4 0.00
887 2 0.00
889 2 0.00
891 18 0.01
892 80 0.04
893 200 0.09
894 26 0.01
895 7 0.00
896 8 0.00
897 19 0.01
898 11 0.01
899 136 0.06
900 3 0.00
901 2 0.00
903 1 0.00
904 1 0.00
905 5 0.00
906 69 0.03
907 102 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (873 bp):
GAGTTCATTCCCAGTCTAAGATCGGACTAGGACCAAGGGTTGCGGCAGCACATGCTAGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAGAACCTGAC
CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCTCGAACCGCAAAAATTTTGAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACATAGTGCCCGCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACAGCAGCAAGATCGGTAGCACGCAG
AGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGACCCTCTGGCCGACTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACG
Found at i:11824353 original size:704 final size:697
Alignment explanation
Indices: 11822976--11824415 Score: 2006
Period size: 703 Copynumber: 2.0 Consensus size: 697
11822966 TGGGCTTACG
** * ** * ** * *
11822976 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGTGGCAGCACATTCTGGGCTCGGGT
1 GAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGCATTGCGGCAGCACATGATGGGCACGGGC
* * * *
11823041 ATGTGCTTGGGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGAC
66 ATGTGCTTGGGCCGCATTTTTCTTCCTTGGGGAACCATCGCCGGAGCATCACCGGAGAACCTGAC
* * * * *
11823106 CGACGGCATTGGGGTTTCGGCGATCGGGGGGGTCGGGGGGTGTGCGCACATAATGTGCGATGGGT
131 CGACGGCATTGGGGTTCCGACGAACGGGGGGGCCGGGGGGTGTGCGCAAATAATGTGCGATGGGT
* *
11823171 GCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAATCCTCAAGAACTCACACCCCCTT
196 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* * * *
11823236 AAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATAC
261 AAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC
* *
11823301 TTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
326 TTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCC
* * *
11823366 AACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
391 AACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
* ** *
11823431 ACATCCCGAACTTCACATGAATCGTGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACA
456 ACATCCCAAACTTCACAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACA
11823496 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCACAAATA
521 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCACAAATA
11823561 TGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTTGTGGC
586 TGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTTGTGGC
*
11823626 CGATATAGTGCCCGCCCGCCCGCCCGTCCGTTTCATCGGTTGGCTTAGGCATAC
651 CGACATAGT-------CGCCCGCCCGTCCGTTTCATCGGTTGGCTTAGGCATAC
**
11823680 GAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGCATTGCGGCAGCACATGATGGGCACGGGC
1 GAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGCATTGCGGCAGCACATGATGGGCACGGGC
* *
11823745 ATGTGC-TGGTGCCGCATTTTTCTTCCTTGGGGAACCATCGCCGGAGCATCGCCTGAGAACCTGA
66 ATGTGCTTGG-GCCGCATTTTTCTTCCTTGGGGAACCATCGCCGGAGCATCACCGGAGAACCTGA
* *
11823809 CCGACGGCATTGGGGTTCCGATGAACGGGGGGGCCGGGGGGGTGTGCGCAAATGATGTGCGATGG
130 CCGACGGCATTGGGGTTCCGACGAACGGGGGGGCC-GGGGGGTGTGCGCAAATAATGTGCGATGG
* * *
11823874 GTGCTGGT-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAATTCACA-CCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* *
11823937 TTCAAGAGCATTTAAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGAGGAC
259 TTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGAC
* *
11824002 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGGGCATG
324 ACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATG
* *
11824067 CCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAAATCTTTCTGAAAAAATTTTA
389 CCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT-
* * * *
11824132 AAAAATCATAAACCTCAAAAAGTTTA-AAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCAT
453 -AAAA-CAT---CC-C--AAACTTCACAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCAT
*
11824196 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
510 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
11824261 AGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
575 ACGCACAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCC
* * * * * * *
11824326 CGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCAGA
640 CGTCT-TGTGGCCGACATAGT---CGCCCGCCCG---TC-CGTTTCATCGGTTGGCTTAGGCATA
11824391 C
697 C
*
11824392 GGAGTTCATTCCCAATCTAAGATC
1 -GAGTTCATTCCCAGTCTAAGATC
11824416 GGACCAGTAG
Statistics
Matches: 652, Mismatches: 67, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
703 186 0.29
704 183 0.28
705 39 0.06
706 3 0.00
708 13 0.02
709 2 0.00
710 1 0.00
711 164 0.25
712 39 0.06
713 22 0.03
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (697 bp):
GAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGCATTGCGGCAGCACATGATGGGCACGGGC
ATGTGCTTGGGCCGCATTTTTCTTCCTTGGGGAACCATCGCCGGAGCATCACCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGACGAACGGGGGGGCCGGGGGGTGTGCGCAAATAATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC
TTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCC
AACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
ACATCCCAAACTTCACAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACA
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCACAAATA
TGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTTGTGGC
CGACATAGTCGCCCGCCCGTCCGTTTCATCGGTTGGCTTAGGCATAC
Found at i:11826364 original size:26 final size:26
Alignment explanation
Indices: 11826330--11826380 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11826320 TGACTTAGGT
*
11826330 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
11826356 ATACAGAGTTCATTCCCAGTTTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
11826381 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:11827269 original size:26 final size:26
Alignment explanation
Indices: 11827233--11827285 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11827223 GTTGACTTAG
11827233 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
11827259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11827285 G
1 G
11827286 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11828161 original size:26 final size:26
Alignment explanation
Indices: 11828132--11828184 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11828122 GTTGACTTAG
11828132 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
11828158 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11828184 G
1 G
11828185 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11828321 original size:899 final size:896
Alignment explanation
Indices: 11823674--11835246 Score: 13613
Period size: 899 Copynumber: 13.1 Consensus size: 896
11823664 GTTGGCTTAG
** * ** *
11823674 GCATAC-GAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGCATTGCGGCAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG-TGGG
* * * * * *
11823738 CACGGGCATGTGCTGGTGCCGCATTTTTCTTCCTTGGGGAACCATCGCCGGAGCATCGCCTGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
11823803 ACCTGACCGACGGCATTGGGGTTCCGATGAACGGGGGGGCCGGGGGGGTGTGCGCAAATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-----GG--GGGGGGGTGTGCGCACATGATGTG
* *
11823868 CGATGGGTGCTGGT-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAATTCAC
188 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
11823932 A-CCCCTTCAAGAGCATTTAAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11823996 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTG
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
11824061 GGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAAATCTTTCTGAAAAA
383 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** * *
11824126 ATTTTAAAAAATCATAAACC-TCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACTAGTCGTCT
448 ATTTTAAAAAATCCTGAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
11824190 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
11824255 ATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
577 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
11824320 GCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCC-CG--C-CCGCTCGTTTCGTTGGTTGG
642 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCCGCTCGTTTCGTCGGTTGG
* * * *
11824381 CTTAGGCAGACGGAGTTCATTCCCAATCTAAGAT-----CGGACC-A--G-T--AGGATCAGTAA
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG-AA
* * * * * *
11824435 ----CA-C--GCAGAGGAGGACCGGGCTGATCCCCGGCTTACGCATCCCGCCCTTCTGGTCGGCT
771 TCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
11824493 GAGCGCCCACGCGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTCA
836 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11824554 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGAGCC-AAGGTTACGATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCGAGGGTTGCGACAGCACATG-TGG
* * * *
11824618 GCTAGGGCATGTGCTGGTGCTGAATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
11824683 AACCTGACC-AGCGCCACT-GGGTTCTGACGATCGGGGGGCCGAGGGGTGTGCGCACATGATGTG
129 AACCTGACCGA-CGGCATTGGGGTTCCGACGATC--GGGG--G-GGGGTGTGCGCACATGATGTG
* ** * *
11824746 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCATCTATCCCTCATCAAACCTCAAGAACTCGC
188 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
11824811 ACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11824876 GGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTG
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
11824941 TGCATCCCAAAAAAAATACAAGGATCACGTCTA-CAAGGTTTGGGGCCAAAACTCCTTCCGAAAA
383 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
11825005 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGGAAATCGTGAAAAATAGAAAACGAGTCGTCT
447 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
11825070 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
11825135 ATTGGCATGCAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
577 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * * *
11825200 GCATCCCGTCTCTCTGGCTGATGTAGTGCCCGCCCGTCT-GCCCACCCACTCTTTTCGTCGGTTG
642 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCC-GCCGCTCGTTTCGTCGGTTG
* * * * * * **
11825264 GCTCAGGCATACGGAGTTCATTCACAGTCTAAGATCGGATCAGACCGAGGATTGTGGCAGCA-AG
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGA-
* * * * *
11825328 ATCGGCAGCACGTAGAGGGGGACCCGATG-C-ATCCTCGCCTTGCGCATCCCGCCCCTCCGGCCG
770 ATCGGCAGCATGCAGAGGGGGACCCG--GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
** * * * * *
11825391 GCTGAGTGCCCGTACGCTCGTTTCGTGGGATGACTTAGGCATTCAGAGTTCAGTCCCAGTCTAA
833 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * * * *
11825455 GCATACGGAGTTCATTCTTAGTCTAAGATCAAACCAGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG-TGGG
* *
11825520 CTCGGGCATGTGCTGGTGCCG-A--ATT-TT--TCGGGGCACCATTGCCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
** * *
11825579 ACCTGACCGGTGGCACT-GGGTTCCGATGATCGGGGGGGCCGGGGGTTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC---GGGG--GGGGG-TGTGCGCACATGATGTGC
** *
11825643 GATGGGTGCTCATACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACA
189 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
11825708 CCCACTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGT-TAGAAAT
254 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAAT
* * * *
11825772 GAGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTTAATTTTTTTG
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
11825837 TGCATGCCAACAAAAATACAAGGATCACGTCTACTAGGTTTGGGGCCAAAACTCCGTCCCAAAAA
383 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
11825902 ATTTTAAAAAAT-CTCAAACCGTAAAATGTTTTGGAAATCGTGAAAAATAGAAAACGAGTCGTCT
448 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
11825966 TGCCCTGAAACTTCACGTGAAGGCTTCAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
11826031 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACGTACCACCTTATC-ATCCACGACTTGC
577 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * *
11826095 GCATCCCATCTCTCTGGTTGGCGTAGTGCCCACCAACCCGCTCGCCCGCCTGCTCGTTTCGTCGG
642 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC--CGC-CTCGCCCGCC-GCTCGTTTCGTCGG
* * * * * * *
11826160 TTGGCTTAGGCATACGTAGTTTATTCCCAATCTAAGATCAGACCGGACCAAGGGTTACGGTAGCA
703 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCA
* * * * * * * * ** * **
11826225 GGATCGACAGCACGTAGAAGGGCACCCGACCAATCCCCGGCTTGATCATCCCTCCCCTCAAGCCG
768 GAATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* ** * *
11826290 GCTGAGCGCCCATACGCTCGTTTCATGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAA
833 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
11826354 GCATACAGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG-TGGG
* * *
11826419 CTCAGGCAT-TGCTGGTGCCACATTTTTCTTCGTCGAGG---CA----C----CATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * **
11826472 ACCTGACCGGCAGCATTGGGGTTCTAACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC----GG--GGGGGGGTGTGCGCACATGATGTGC
* * *
11826537 GATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTAACA
189 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
11826602 CCCCCTT-AAGAGCATTTGAGATTTTATAGGTTTCCTGCCAGTAGCCATTATAGTGTCTGAAATG
254 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * **
11826666 GGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCCGAATCATTTTGT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
11826731 GCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTACCGAAAAAA
384 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
11826796 TTTTAAAAAAAATCCCTG-ACCGTAAAAAGTTTTGAAAATCGTGAAAAATGGAAAACGAGTCGTC
449 TTTT--AAAAAAT-CCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11826860 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACC-TTGTATGAATTTACAAGCCATAAAAATGG
511 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
11826924 CATTGGAATGCAGAAAATATGAAGATGGGTGCCTAAACCCACATACCACCCTA-CGATCCATGAC
576 CATTGGCATGCAG-AAATATGAAGAT--GTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
11826988 ATGCGCATCCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG-CTCGCTCGCCGCCGCCTGCCGTT
638 TTGCGCAT-CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCG--C-CCGCCG-CT--CGTT
* * *
11827052 TCATCGG-TGGCTTAGGCAT-CGGGAGTTCATATCCCAAG-CTAAGATCGGACCGGACTGAGGGT
696 TCGTCGGTTGGCTTAGGCATAC-GGAGTTCAT-TCCC-AGTCTAAGATCAGACCGGACCGAGGGT
* * * * * * *
11827114 TGGCAGTACCAGAATCGGTAGCCATACAGAGGGGGACCCGGCCGATCCCCAGCTTGCACATCCTT
758 T-GCAGCAGCAGAATCGGCAG-CATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC-C
** * *
11827179 GCCCCTCTGGCCCGGCCTGA-CAATCGCTATGCCTCTTTTCGTGGGTTGACTTAGGCATACGGAG
820 GCCCCTCTGG-CCGG-CTGAGCACCCGC-ACG-CTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
11827243 TTCATTCCCAATCTAA
881 TTCATTCCCAGTCTAA
* *
11827259 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCATAAT-TGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCA-CATGTGGG
* * *
11827323 CTCGGGCATGCGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCGAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
11827388 ACCTGACCGACGGCATTGGAGTTCCGACGATC-GGGGGGGGTGTGCGCACATGATGTACGATGGG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
11827452 TGCTGATACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
11827517 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * ** *
11827582 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATCATTTTGTGCACGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
11827647 CAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTACCGAAAAAATTTAAA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
11827712 AAAATTCCTG-ACCGTAAAAAGTTTTGAAAATCGTGAAAAATGGAAAACGAGTCGTCTTACCATG
455 AAAA-TCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
11827776 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
11827841 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACATGCGCATCCC
584 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
11827906 GTCTCTCTGGCTGGCGTAGTGCCCGCCCGCTCGCTCGCCCGCCTGCTCGTTTCATCGGTTGGCTT
649 GTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CTCGCCCGCC-GCTCGTTTCGTCGGTTGGCTT
* *
11827971 AGGCATACGGAGTTCATTCCCAAG-CTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGAATTG
710 AGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGAATCG
* * * *
11828035 GCAGCATACAGAGGGGGACCCGGCCGATCCCCAGCTTGCACATCCTGCCCCTCTGGCCGGCTGAG
774 GCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
11828100 CGCTCGCATGCTCTTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
839 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11828158 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACAAT-TGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAC-ATGTGGG
* * *
11828222 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCGAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
11828287 ACCTGACCGACGACATTGGGGTTCCAACGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-----G--GGGGGGGGTGTGCGCACATGATGTG
* * * * *
11828352 TGATGGGTGCTGATACATGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCAC
188 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
11828417 ACCCCCTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGGAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11828482 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAAATTTTTTA
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
11828547 TGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGATTGGGGCCAAAACTCCTTCCGAAAAA
383 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
11828612 ACTTTAAAAAATCCTGAACCGTAAAACGTTTTGAAAATTGTGAAAAATAAAAAACGAGTCGTCTT
448 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
11828677 GCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
11828742 TTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTGCCACCCTATCAATCCACGGCTTGCG
578 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
11828807 CATCCCGTCTCTCTGGCCGGCGTAGTG---G-CCGCC-CGCCCGCCTGCTCGTTTTGTTGGTTGG
643 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCC-GCTCGTTTCGTCGGTTGG
* ** *
11828867 CTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCAGCATCA-AGA
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGA-A
** * * ** * *
11828931 TCGATAGCATGCATAGGGGGACCTGGTTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTT
771 TCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * * *
11828996 GAGCACCCGCATGCTTGTTTCGTGGGCTGACTTAGCCATATGGAGCTCCTTCCCAGTCTAA
836 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
11829057 GCATACGGAGTTCATTCCCAGTCTAAGATC-GATTGAATCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG-TGGG
* * * * *
11829121 CTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCATTGGGGCACCATCGTCGGAGCAGCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
*** * *
11829186 ACCTGACCGGTTGCATTGGGGTTTCGACGATCGGGGGGCCAGGGGGTGTGTGCACATGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC--GGGG---GGGGGTGTGCGCACATGATGTGCG
* *
11829251 ATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACTCACAC
190 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
11829316 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGTAATGG
255 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
11829381 GGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTTGAGTTTTTAGGTGAATTTTTTTGTG
320 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
11829446 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
385 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
11829511 TTTAAAAACTCCCGAACCGTAAAAAGTTTTAAAAATCGTTAAGAATAGAAAACGAGTCGTCTTGC
450 TTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
11829576 CATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTT---A--C-----AA--GC---
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
11829626 --CAT--A-AAA-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
580 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
11829685 TCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCT-G---GCCGCTCATTTCTTCAGTTGGCTT
645 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCCGCTCGTTTCGTCGGTTGGCTT
* * * *
11829746 ACGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGC-G--GC---A---G
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGAATCGG
* * * * * *
11829802 -A--ATGCAGAGGGGGACCCAGCTGATCCCCGGCTTGTGCATCCCACCCTTCTGGCCGGTTGAGC
775 CAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
11829864 GCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
840 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11829921 G-AT-C---G---A-----A--C------CGGACC-GA--GA--GTTGCGATAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG-TGGG
* * * ** * *
11829960 CTCGGGCATGTACTGATGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCATCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
11830025 ACCTGACCGGA-GACATTAGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGTGCCCATGATGT
130 ACCTGACC-GACGGCATTGGGGTTCCGACGATC-----GG--GGGGGGGTGTGCGCACATGATGT
* * * * *
11830089 GCGATGGGTGGTGGTACTTGGCCCTTATATTGGGCCCCTATCTGC-CATTAAACCTCGACAACTC
187 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAACCTCGAGAACTC
*
11830153 ACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
251 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
11830218 ATGGGGATACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGGTGAATTTTTT
316 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
11830283 TGTGCATGCCATA-AAAAATACAAGGATCTCATCTACCAAGTTTGGGGCCAAAACTCCTTCCG-A
381 TGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * * *
11830346 AATATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCG
445 AAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
* * * *
11830410 TCTTGCCATGAAACATCACGTGAAGGTTTAAAGGACCATCGTATGAATTTACAAGCCATAAAAAT
509 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
11830475 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
574 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
11830540 TGCGCGT-CCGTCTCTCAGGCCGACGTAGTGCCCACCCGCCAT--CCCGCCCGCTCGTTTCATCA
639 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-TCGCCCG-CCGCTCGTTTCGTCG
* * * * *
11830602 ATTGGCTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
702 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGC
* * ** * *
11830667 AGGATCGGCAGCACGTTGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
767 AGAATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
11830732 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
11830797 GCATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTAC-AGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATG-TGG
* ** * **
11830861 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCACCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
11830926 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGTGTGCGCACATGATATT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATC---GGGG--G-GGGGTGTGCGCACATGATGTG
* * * * *
11830991 CGATGGGTGTTGGAACTTGGCCCTTATATTGGCCCCCTAACTCTCATCATACCTCGAGAACTCAC
188 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
11831056 ACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11831121 GGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
11831186 TGCATGCCAAGAAAAATACAACGATCGCATCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAA
383 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
11831251 ATTTTAAAAAATCC-CAAGCCGTAAAAAGTTTTGAAAA-CTGTGAAAAATAAAAAACGAGTCGTC
448 ATTTTAAAAAATCCTGAA-CCGTAAAAAGTTTTGAAAATC-GTGAAAAATAGAAAACGAGTCGTC
11831314 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
511 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
11831379 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACATGGCTTA
576 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
11831444 CGTATCCCGTCTCTCTAGCCAGCGTAGTGCCCGCCCGCC-CG--C-CCGCTCGTTTCGTCGGTTG
641 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCCGCTCGTTTCGTCGGTTG
* **
11831505 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC--A---GACC--GGTTTG-AG-AG--TTA
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGAA
* * * * ** * *
11831559 -CGGCAGCACGTAGAGAGGGACCCGACCGATCCTTGGCTTGCGCATCCTGCCCCTCTAGCCGGCT
771 TCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * **
11831623 GAGTACCCGCACGCTCGTTTCATGGGTTGACTTGGGCATATTG-GTTCATTCCCAGTCTAA
836 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
11831683 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGTATCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG-TGGG
* * * *
11831748 CTCAGGCATGTGTTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
11831813 ACCTGACC-AGTGGCATTGGTGTTTCGGCGATTGGGGGGGCCGGAGGGTGTGCGCACATGATTTG
130 ACCTGACCGA-CGGCATTGGGGTTCCGACGA-T--CGGGG--GG-GGGTGTGCGCACATGATGTG
* * *
11831877 CGATGGATGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTAGAGAACTCAC
188 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
11831942 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11832007 GGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
11832072 TGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGATTGGGGCCAAAACTCCTTCTGAAAAA
383 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
11832137 ACTTTAAAAAAT-CTCGAACCG-AAAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCT
448 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
11832200 TGCCATGAAGCTTCACGTGAAGGCTTATGGGACCATTGTACGAATTTAGAAGCCATAAAAATGGC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
11832265 ATTTGCAAGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATC-GCTTG
577 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTTG
* * * *
11832329 CACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C-C-CAC-CCGCTCATTTCATCGGTTG
641 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCCGCTCGTTTCGTCGGTTG
* ** * * ** *
11832390 GCTTAGGCATACCGAGTTCATTCCCAGTCTAAGATTGGACCGAATCGAGGGTTGTGGCAGCAGGA
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGAA
* * * ** * *
11832455 TCGGTAGCATGC-GAGGGGGACCCGGTCGATCCCTGGCTAACGCATCCTGTCCCTCTGGCCGGCT
771 TCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
11832519 GAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAA
836 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11832580 G-AT-C---G---A-----A--C-AAGAT-----C-G---G-GGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATG-TGGG
* * * * ***
11832619 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGCTAGG-GCATTACCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-CGGAGCATCGTCGGAG
* * *
11832683 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGTGGGACGGGGTGGGCGTGCGCACATGATG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GG-GGG--GGGGT----GTGCGCACATGATG
* * * * *
11832748 TGCAATGGGTGCCGGTACTTGGCCTTTATATTGGCCCCTTTTCCCTCATCAAACCTCGAGAACTC
186 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
11832813 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGA
251 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GA
* * * *
11832877 AATGGGGGCACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTCTT
315 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* **
11832942 TTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAA
380 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
11833007 AAAATTTTAAAAAATCCTGAACCGTAAAAATTTTTGAAAATCATGAAAAATAGAAAATGAGTCGT
445 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
11833072 CTTGCCTTGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
510 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
11833137 GTATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTT
575 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
11833202 GCGCATCCCGTCTCTGTGGCCGGCGTAGTGCCCGCCCGCC-CGCCCGCCCGCTCATTTCATCGGT
640 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCG-CCGCTCGTTTCGTCGGT
* * * * * *
11833266 TGGCCTAGGTATATGGAGTTCATTCTCAGTCTAAGATTAGACCGGACCGAGGGTTACAGCAGCAG
704 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG
* * * ** ** * *
11833331 GATCAGCAGGACACAGAGGGGGACCCGATCGATCCCCGGCTTCCGCATCCCGCCCCTCTGGCAGG
769 AATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
11833396 CTAAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T--
834 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11833455 -C-TA---AG---A-T---AG-----GAT---A--GGACCGAGGGTT-CTGGCAGCTCATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCACATG-TGG
* * * * * **
11833497 GCTTGGGCATGTGTTCGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCACCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * ** * *
11833562 AA-CTCGATCGACGGCATTGGGGTTCTGGTGATCAGGGGGCCGGGGGGTGGCGCACATGATGTCC
129 AACCT-GACCGACGGCATTGGGGTTCCGACGATC-GGGGG--GGGGTGT-GCGCACATGATGTGC
11833626 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
189 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
11833691 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
254 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
11833756 GGGACACTTGTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
11833821 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCCTCCAAAAAAA
384 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
11833885 TTTTAAAAAAT-CTCGAACCGCAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
449 TTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
11833949 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
11834014 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCG
578 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * * ** *
11834079 CATCTTGTCTTTCTGGTCGACGTAGTGCCC-ACCGCCT-GCCTAACCGCTCGTTTCGTCTGTTGG
643 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCC-CGCCGCTCGTTTCGTCGGTTGG
* * * * *
11834142 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCGGCAGCAGGAT
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGAAT
* *** * * * * * *
11834207 CGACAGCACATAGAGAGGGACCCGACCAATCCCCGGGTTGCGCATCCCGCCCCTCTGGTCGACTG
772 CGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
11834272 AGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATTCTAA
837 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
11834331 G-AT-C-G-G---A----C---C----A----A----ACCGAGGGTTGCGGA-AGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCACATG-TGG
* * * * *
11834369 GCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCATCGGGG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * ** * ** * * *
11834434 AACCTGATCGGCGGTGTTGGGGTTTCGGTGATCGAGGGGCCCAAGGGTTGTGTGCAAATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGG-----GGGGTGTGCGCACATGATGTG
* * *
11834499 CAATGGGTGCTAGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
188 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
11834564 ACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11834629 GGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCAAGTTTTTAGCTGACTTTTTTTG
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
11834694 TGCATGCCAACAAAAATACAAGGATCACGTCGACCAAGTTTGGGGACAAAAATCCTACCGAAAAA
383 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** *
11834759 ATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCT
448 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
11834823 TGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
11834888 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT-C
577 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
11834952 GCATCCCGTCTCTCTGGTCC-TCGTAGT----GCTCGCC-CG--C-CCGCTCGTTTCGTCGGTTG
642 GCATCCCGTCTCTCTGG-CCGGCGTAGTGCCCGCCCGCCTCGCCCGCCGCTCGTTTCGTCGGTTG
* * * * * * *
11835008 CCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGA
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGAA
* * * * * * * * * *
11835073 CCGGTAGCATACAGTGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCACCCTTCTAGCCCGCT
771 TCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* ** * **
11835138 GAGCACCCGCACGCTCGTTTCATGGGTTGACACAAGCATAC-GAGTTCACCCCCAGTCTAA
836 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
11835198 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
11835247 NNNNNNNNNN
Statistics
Matches: 9363, Mismatches: 998, Indels: 651
0.85 0.09 0.06
Matches are distributed among these distances:
839 99 0.01
840 100 0.01
841 257 0.03
842 6 0.00
843 3 0.00
844 4 0.00
845 1 0.00
849 1 0.00
850 2 0.00
851 1 0.00
852 2 0.00
856 1 0.00
857 3 0.00
859 2 0.00
860 33 0.00
861 53 0.01
862 1 0.00
863 3 0.00
864 168 0.02
865 1 0.00
866 8 0.00
867 171 0.02
868 3 0.00
869 7 0.00
870 7 0.00
871 106 0.01
872 116 0.01
873 460 0.05
874 683 0.07
875 450 0.05
876 246 0.03
877 17 0.00
878 128 0.01
879 245 0.03
880 413 0.04
881 122 0.01
882 3 0.00
884 51 0.01
885 246 0.03
886 435 0.05
887 100 0.01
888 1 0.00
889 8 0.00
890 5 0.00
891 1 0.00
892 12 0.00
893 209 0.02
894 149 0.02
895 212 0.02
896 520 0.06
897 452 0.05
898 93 0.01
899 824 0.09
900 33 0.00
901 465 0.05
902 297 0.03
903 80 0.01
904 39 0.00
905 160 0.02
906 85 0.01
907 490 0.05
908 105 0.01
909 137 0.01
910 188 0.02
911 1 0.00
912 1 0.00
916 38 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGAATCGGCAGCAT
GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11830801 original size:26 final size:26
Alignment explanation
Indices: 11830771--11830823 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11830761 GTTGACTTAG
*
11830771 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
11830797 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11830823 G
1 G
11830824 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11833019 original size:873 final size:871
Alignment explanation
Indices: 11829633--11835198 Score: 6915
Period size: 874 Copynumber: 6.3 Consensus size: 871
11829623 AGCCATAAAA
11829633 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * * *
11829698 GCCGACATAGTGCCCGCCCGCCTGGCCGCTCATTTCTTCAGTTGGCTTACGCATACGGAGTTCAT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* *
11829763 TCCCAGTCTAAGATCGGACC-AGACCAAGGGTTGCGGCAG-A--A----T-GCA--GAGGGGGAC
131 TCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCATCGAGGGGGAC
* * * * * * *
11829817 CC-AGCTGATCCCCGGCTTGTGCATCCCACCCTTCTGGCCGGTTGAGCGCCCGCACGTTCGTTTC
195 CCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* * * ** *
11829881 GTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGAGTTGCGA
259 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAAGACCGAGGGTTGCGA
* * * * * ** *
11829946 TAGCATATGCTGGGCTCGGGCATGTACTGATGCCACATTTTTCTTCACCGGGGCACCATCACCGG
324 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * * * * * *
11830011 AGCATCATCGGAGAACCTGACCGGAGACATTAGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGT
389 AGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGG-GGGGCCCGGGGGGTGT
* * * * * *
11830076 GTGCCCATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGGCCCCTATCTGC-CATTAA
453 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAA
* *
11830140 ACCTCGACAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
517 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
11830205 TAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTT
582 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
11830270 AGGTGAATTTTTTTGTGCATGCCATA-AAAAATACAAGGATCTCATCTACCAAGTTTGGGGCCAA
647 AGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* ** *
11830334 AACTCCTTCCG-AAATATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
711 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATA
* * * * *
11830398 AAAAATGAGTCGTCTTGCCATGAAACATCACGTGAAGGTTTAAAGGACCATCGTATGAATTTACA
776 AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
11830463 AGCCATAAAAATGGCATTGGCATGCAGAAAT
841 AGCCATAAAAATGGCATTGGCAAGCAGAAAT
* *
11830494 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGT-CCGTCTCTCAG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * ** *
11830558 GCCGACGTAGTGCCCACCCGCCATCCCGCCCGCTCGTTTCATCAATTGGCTTAGGCATACAGAGT
66 GCCGGCGTAGTGCCCGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * *
11830623 TCAATCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTTGAGG
127 TCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCA--TCGAGG
* * * *
11830688 GGGACCCGGCCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
190 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
11830753 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
255 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG-A----A----C--
* * *
11830818 TGTAAGATCGGACCGGACCGAGGGTTAC-AGCAGCACATGTTGGGCTCAGGCATGTGCTGGTGCC
307 ------A----A---GACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** *
11830882 GCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGG
358 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGG
* * * * * * *
11830947 GTTCCGGCGATCGGGGGGGCCGAGGGGTGTGCGCACATGATATTCGATGGGTGTTGGAACTTGGC
423 GTTTCGGCGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
11831012 CCTTATATTGGCCCCCTAACTCTCATCATACCTCGAGAACTCACACCCCCTTACAGAGCATTTGA
488 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
11831077 GATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCGAATGG
553 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
11831142 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAA
618 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * * * *
11831207 CGATCGCATCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CCAAGCC
683 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA-CC
11831271 GTAAAAAGTTTTGAAAA-CTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
747 GTAAAAAGTTTTGAAAATC-GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
11831335 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-CAGAAAT
811 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAGAAAT
* * * * *
11831396 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACATGGCTTACGTATCCCGTCTCTCTA
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
*
11831461 GCCAGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
**** * *
11831526 TCCCAGTCTAAGATCAGACCGGTTTGAGAGTTACGGCAGC---A-C-GTAG-A--GA--GGGACC
131 TCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCATCGAGGGGGACC
** * * *
11831581 CGACCGATCCTTGGCTTGCGCATCCTGCCCCTCTAGCCGGCTGAGTACCCGCACGCTCGTTTCAT
196 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCAT
11831646 GGGTTGACTTGGGCATATTGGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
261 -GG--G--TT--G---A------C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
11831711 TCGGAC-CGTATCGAGGGTTGCGATAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTT
301 TCGAACAAG-ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * ** * * *
11831775 TCTTTGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCAGTGGCATTGGTGTTTCGG
365 TCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGG
* * * * *
11831840 CGATTGGGGGGGCCGGAGGGTGTGCGCACATGATTTGCGATGGATGCTGGTACTTGGCCCTTATA
430 CGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
11831905 TTGGGCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
495 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
11831970 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
560 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
11832035 TTCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
625 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
11832100 GTCCACCAAGATTGGGGCCAAAACTCCTTCTGAAAAAACTTTAAAAAATCTCGAACCG-AAAAAG
690 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
* * *
11832164 TTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCTTATG
755 TTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
11832229 GGACCATTGTACGAATTTAGAAGCCATAAAAATGGCATTTGCAAGCAGAAAA
820 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAAT
*
11832281 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATC-GCTTGCACATCCCGTCTCTCT
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTTGCGCATCCCGTCTCTCT
* * * *
11832345 GGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTAGGCATACCGAGTTCA
65 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * *
11832410 TTCCCAGTCTAAGATTGGACCGAATCGAGGGTTGTGGCAGCAGGATCGGTAGCATGCGAGGGGGA
130 TTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCAT-CGAGGGGGA
** * ** * * *
11832475 CCCGGTCGATCCCTGGCTAACGCATCCTGTCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTC
194 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* * * * *
11832540 ATGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCGAACAAGATCGGGGGTTGTGG
259 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAAGACCGAGGGTTGCGA
* * * *
11832605 CAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGCTAG
324 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-CG
* * * *
11832670 G-GCATTACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGTGGGACGGGGTGGGC
388 GAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGG-GGGCCCGGG-GGGT
* * * * *
11832734 GTGCGCACATGATGTGCAATGGGTGCCGGTACTTGGCCTTTATATTGGCCCCTTTTCCCTCATCA
451 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
11832799 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
516 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
11832864 TTAAAGTGT-TCGAAATGGGGGCACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
581 TTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
11832928 TTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCA
645 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
** * *
11832993 AAACTCCTTTTGAAAAAATTTTAAAAAATC-CTGAACCGTAAAAATTTTTGAAAATCATGAAAAA
710 AAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAA
* * * *
11833057 TAGAAAATGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTA
774 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
11833122 CAAGCCATAAAAATGGTATTGG-AATGCAGAAAT
839 CAAGCCATAAAAATGGCATTGGCAA-GCAGAAAT
* *
11833155 ATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTGTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
11833220 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCCTAGGTATATGGAGT
66 GCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * *
11833285 TCATTCTCAGTCTAAGATTAGACCGGACCGAGGGTTACAGCAGCAGGATCAGCAGGACA-CAGAG
127 TCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTA-G-CATC-GAG
* * * *
11833349 GGGGACCCGATCGATCCCCGGCTTCCGCATCCCGCCCCTCTGGCAGGCTAAGCACCCGCACGCTC
189 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
** * * * * *
11833414 GTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAGGATAGGACCGAGGGT
254 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAAGACCGAGGGT
* * * * *
11833479 T-CTGGCAGCTCATGCTGGGCTTGGGCATGTGTTCGTGCCGCATTTTTCTTCGTCGGGGCACCAT
319 TGC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * * *
11833543 CGTCGAAGCATCACCGGAGAA-CTCGATCGACGGCATTGGGG-TTCTGGTGATCAGGGGG-CCGG
383 CGCCGGAGCATCACCGGAGAACCT-GACCGGCGGCATTGGGGTTTC-GGCGATCGGGGGGCCCGG
*
11833605 GGGGTG-GCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
446 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
11833669 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
511 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
11833734 AGCCATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTCACAAAATCTTTTACACTTCGA
576 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
11833799 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
641 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
11833864 G-CAAAACTCCCTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAATTTTTGAAAATCGTGAA
706 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAA
*
11833928 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
771 AAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
11833993 TTACAAGCCATGAAAATGGCATTGGCATGTAGAAAT
836 TTACAAGCCATAAAAATGGCATTGGCAAGCAGAAAT
* ** *
11834029 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCTTGTCTTTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
11834094 GTCGACGTAGTGCCC-ACCGCCTGCCTAACCGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGT
66 GCCGGCGTAGTGCCCGCCCGCCCG-C---CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * *
11834158 TCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACATAGAGA
127 TCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAG--CATCGAGG
* * * * *
11834223 GGGACCCGACCAATCCCCGGGTTGCGCATCCCGCCCCTCTGGTCGACTGAGCACCCGCACGCTTG
190 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
* * *
11834288 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATTCTAAGATCGGACCAA-ACCGAGGGT
255 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAAGACCGAGGGT
* *
11834351 TGCGGA-AGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
319 TGC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * ** * * **
11834415 CGCCGAAGCATCATCGGGGAACCTGATCGGCGGTGTTGGGGTTTCGGTGATCGAGGGGCCCAAGG
383 CGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGCCCGGGG
* * * * * *
11834480 GTTGTGTGCAAATGATGTGCAATGGGTGCTAGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCA
448 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
11834545 TCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
513 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
11834610 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCAAGT
578 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
11834675 TTTTAGCTGACTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCGACCAAGTTTGGGGA
643 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * ** *
11834740 CAAAAATCCTACCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTAAAAA
708 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAA
* * *
11834805 ATAGAAAACGAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTATATGAATTT
773 ATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
11834870 ACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
838 ACAAGCCATAAAAATGGCATTGGCAAGCAGAAAT
*
11834904 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT-CGCATCCCGTCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
11834968 GTCC-TCGTAGT----GCTCGCCCGCCCGCTCGTTTCGTCGGTTGCCTTAGGCATACGGAGTTCA
66 G-CCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
11835028 TTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTACGGTAGCAGGACCGGTAGCATACAGTGGGG
130 TTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCAT-C-GAGGGG
* * * * *
11835092 GACCCGACCGATCCCTGGCTTGCGCATCCCACCCTTCTAGCCCGCTGAGCACCCGCACGCTCGTT
192 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
** * **
11835157 TCATGGGTTGACACAAGCATAC-GAGTTCACCCCCAGTCTAAG
257 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
11835199 CATACGGAGT
Statistics
Matches: 4115, Mismatches: 454, Indels: 266
0.85 0.09 0.06
Matches are distributed among these distances:
860 28 0.01
861 52 0.01
864 73 0.02
865 4 0.00
866 8 0.00
867 166 0.04
869 6 0.00
870 6 0.00
871 145 0.04
872 133 0.03
873 464 0.11
874 656 0.16
875 438 0.11
876 110 0.03
877 6 0.00
878 102 0.02
879 213 0.05
880 3 0.00
883 1 0.00
884 1 0.00
885 263 0.06
886 391 0.10
887 67 0.02
888 3 0.00
889 4 0.00
890 5 0.00
891 3 0.00
892 2 0.00
893 2 0.00
894 6 0.00
895 3 0.00
896 63 0.02
897 1 0.00
899 74 0.02
900 2 0.00
901 259 0.06
902 289 0.07
903 27 0.01
904 2 0.00
905 1 0.00
907 2 0.00
910 2 0.00
911 2 0.00
912 27 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (871 bp):
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCATCGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCAT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAAGACCGAGGGTTGCGACA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGCCCGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCAAGCAGAAAT
Found at i:11835199 original size:25 final size:26
Alignment explanation
Indices: 11835171--11835224 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
11835161 GGGTTGACAC
11835171 AAGCATAC-GAGTTCACCCCCAGTCT
1 AAGCATACGGAGTTCACCCCCAGTCT
**
11835196 AAGCATACGGAGTTCATTCCCAGTCT
1 AAGCATACGGAGTTCACCCCCAGTCT
11835222 AAG
1 AAG
11835225 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (26 bp):
AAGCATACGGAGTTCACCCCCAGTCT
Found at i:11837792 original size:26 final size:26
Alignment explanation
Indices: 11837763--11837815 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11837753 CCGGTCCGAT
11837763 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11837789 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11837815 C
1 C
11837816 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11838717 original size:26 final size:26
Alignment explanation
Indices: 11838667--11838719 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11838657 CTGGTCTGAT
* **
11838667 CTTAAACTGGGAATGAACTTTGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
*
11838693 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
11838719 C
1 C
11838720 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:11839609 original size:26 final size:26
Alignment explanation
Indices: 11839573--11839625 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11839563 CTGGTCTGAT
* *
11839573 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGAATG
*
11839599 CTTAGACTGGGACTAAACTCCGAATG
1 CTTAGACTGGGAATAAACTCCGAATG
11839625 C
1 C
11839626 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGAATG
Found at i:11840516 original size:26 final size:26
Alignment explanation
Indices: 11840476--11840525 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11840466 CTGGTTCGAT
*
11840476 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11840502 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
11840526 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11841399 original size:26 final size:26
Alignment explanation
Indices: 11841370--11841422 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11841360 CTGGTTTGAT
* *
11841370 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
11841396 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
11841422 C
1 C
11841423 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:11844064 original size:26 final size:26
Alignment explanation
Indices: 11844013--11844065 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11844003 CCAGTCCGAT
* * *
11844013 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
11844039 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
11844065 C
1 C
11844066 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:11845812 original size:26 final size:26
Alignment explanation
Indices: 11845783--11845835 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11845773 CTGATCCGAT
*
11845783 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11845809 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11845835 C
1 C
11845836 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11846307 original size:887 final size:890
Alignment explanation
Indices: 11836471--11850438 Score: 16764
Period size: 887 Copynumber: 15.7 Consensus size: 890
11836461 TCGGTTCGGG
* * * *
11836471 ATTTTTGTTGGCATGCACAAAAAAATTAACCTAAAAACTCAAAGTGTACAAGATTTTGTGAACAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
11836536 TTGAAAAAAGTGTCCCCATTACAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
11836601 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTGATGAGGGGTAGGGGGCCAATATAAGGGAC
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
11836666 AAGTACCAGCACCCATCGCACATCATGT--GCACACTCCCCC-G-CCCCCCGATCGTCGGAACCC
195 AAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCCGATCGCCGGAACCC
*** *
11836727 CAATGCAACCGGTCAGGTTCTCCGACGCTGCTCCGACGATGGTGCCCCGACGCATAAGAAAAATG
259 CAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG---AAGAAAAATG
* ** * **
11836792 AGGCACCAGCAACCATGCCCGAGCCCAGCAATGTGCCTGTTTGCCATACCCTCGGTTTAAAT-CG
321 CGGCACCAGC-A-CATGCCCGAGCCCAGC-ATGTG-CTG-CCG-CA-ACCCTCGGTCT-GGTCCG
* * *
11836856 ATCTTATACCTGGGGAATTGAACATCCGTATGCTTAGACTGGGAATGAACTCCATATGGCTAAGT
378 ATCTTAGA-CT-GGGAA-TGAAC-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * ** *
11836921 CAGCCCACGAAACAAGCATACGGGTGCTCAACCGGCCAGAGGGGCGGGATGCATAAGCTGGGGAT
439 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * *
11836986 CAGTCGGGTCCCCCTATGCATGCTG-TCGATCTTGATGC-CGTAACCCTCAGTCTGGTCTGATCT
504 CGGTCGGGTCCCCC--TGC-TGC-GCT-G--C-TGCTGCAC--AACCCTCA-TCCGGTCCGATCT
* * ** ** * *
11837049 TAGACTGGGAATGAATTCCGTATGCATAAGCCAACAAACGAAACGAGTAGGCAGGCGGGCGGCCA
558 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * *
11837114 CTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGC
623 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
**
11837179 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
688 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
11837244 AAGCCTTCACCGTG-AGCTTCTTGGCAAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAAC
753 AAGCCTTCA-CGTGAAGTTTCATGGC-AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* * * * * * *
11837308 TTTTTACGGTTCGAGATTTTTTAAAGTTTTTTCAGAAGGATTTTTGGCCTCAATCTTGGTCGACG
816 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
11837373 TGATCCTTGT
881 TGATCCTTGT
* *
11837383 ATTTTTGTTGGCATGCATAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
11837448 TTGAAAAAAGTGTCCCCATTTCAGACATTTTAAAGGCTACTTGGCAGCAAACCTGTAAAATCTCA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC-TGGCAGCAAACCTGTAAAATCTCA
*
11837513 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
130 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
11837578 ATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGGCCCCCCGATCGCCGGAACCC
195 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCC
* ** *
11837643 CAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGTGATGGTGCCCCAACGAAGAAAAATGCGG
259 CAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * * * *
11837708 CACCAGCACATGCCCGAGACCAG-TTGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTG
324 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* **
11837772 GGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAAA
389 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
11837837 GCATGCGAGCGCTCAGCCAGCCAGAGGGGCAGGATGCACAAGCTGGGGATCGG-CTGGGTCCCCC
454 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCC
* * * * * **
11837901 T-CTGTATGCTGCCGATTCTGCTACTGCAACCCTCAGTCTGGCCCAATCTTAG-CTTAAGAAT-A
518 TGCTG--CGCTG-C--TGCTGC-A---CAACCCTCA-TCCGGTCCGATCTTAGAC-TGGGAATGA
* *
11837963 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGACGGGCGAGCGAGCGGGCGGGCACTACGC
572 ACTCCGTATGCCTAAGCCAACCGACGAAAC--G-AG-CGGGC--G-G-GCGGGCGGGCACTACGT
* * * * *
11838028 CGGCCAGAGAGACGGGATGCGCATGTCATGGATCGATAGGGTGGTAGGTGGGTTGAGGCATATCT
629 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
11838093 TCATATTTCTGCGTTCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
694 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * * *
11838158 TCACATGAAGTTTAATGGCAAGATGACTCGTTTTCCATTTTTCACGATTTTTAAAACTTTTTACG
759 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCG
* * *
11838223 GTCCGAGATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCT
824 GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
11838288 GT
889 GT
** *
11838290 ATTTTTGTTGGCATGCACAAAATGATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
11838355 TTGAAAAAAGTGTCCCCAATTCAGACACTATAATGGCTACTGGCAGGAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
11838420 ATGCTC-TTAAGGGGGTGTTAGTTCTCGAGGTTTGATGCGGGATAGGGGCCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
11838484 TGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCTCCCGATCGCTGTAACCCCA
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* * * *
11838548 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGTGGCA
261 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * * * *
11838613 CCAGCACATGCCTGAGCCCAGCATTTGCTGCCACAACCCTTGGTCTGGTCTGATCTTAAACTGGG
326 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
** *
11838678 AATGAACTTTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
391 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * ** * *
11838743 GTACGGGCGCTCAGCCGGCCTGAGGGGAGGGATGATCAAGCTGGGGATTGGTCGGGTGCCCCTCT
456 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCC-C-
* * * * ** * * *
11838808 ATGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGATTGGGAATAAACTCC
518 ---TGCTG-CGCTGCTGCT-GCACAACCC-TCATCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * **
11838873 GTATGCCTAAGCCAACTGACTAAACGAGCAGGCGGACGGGCGGGTTGGCGGGCACTACGCCAACC
577 GTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGGC--G--GGCGGGCACTACGTCGGCC
* * * * ** *
11838938 AGAGAGATGGGATGCGTAAGTCATGGATCGATAAAGTGGTACGTGGGTTTAGGCACATCTTCATA
634 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * *
11839003 TTTCTATGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTCAAGCCTTCACG
699 TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * *
11839068 TGAAGTTTCAGGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCCAAAACTTTTTACGGTTTG
764 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCG
* * * *
11839133 AGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCTCCAAACCTAGTAGACGTGATCCTTGT
829 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
11839195 ATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * * *
11839260 TTGAAACAATTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTAAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
11839325 ATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
** * *
11839390 AGTATGAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCACCGGAA-CCCA
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* ** * * **
11839454 GTGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATTTGGCA
261 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * *
11839519 CCAGCACATGCCTGAGCCCAGCATGTGCT-CCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGG
326 CCAGCACATGCCCGAGCCCAGCATGTGCTGCC-GCAACCCTCGGTCTGGTCCGATCTTAGACTGG
* * * * *
11839583 GAATGAACTCCGTATGCTTAGACTGGGACTAAACTCCGAATGCCTAAGTCATCCCACAAAACGAG
390 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
11839648 CGTGCGGGCGCTTAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGAT-GGATCGGGTCCCCCT
455 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-TCGGGT-CCCC-
* * * * * * *
11839712 CTACGTGCTGCCGATCTTGCTGCCACAACCCTCGGTCTGATCCGACCTTAGACTGCGAATGAACT
517 CTGC-TGC-GCTG--C-TGCTG-CACAACCCTC-ATCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * * *
11839777 CCGTATGCCTGAGCCAACCGACTAAAAGAATGGGTGGGCGGGCGGGCGGGCACAACGTCAGCCAG
575 CCGTATGCCTAAGCCAACCGACGAAACG-A---GCGGGCGGGCGGGCGGGCACTACGTCGGCCAG
* * * ** *
11839842 AGAGACAGGATGCGCAAGCCGTGGATCGATAGTGTGGCAGGTGGGTTTAGGTGCATCTTCCTATT
636 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
** *
11839907 TCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTG
701 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* *
11839972 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCCAAAACTTTTTGCGGTTCGGG
766 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAG
* * * *
11840037 ATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACCTAGTAGACGTGATCCTTGT
831 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
11840097 ATTTTTGTTGGGATGCACAAAAAAATTCAGCTAAAAACTCAAAATGTACAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
11840162 TTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * **
11840227 ATGCTCTTTAAGTGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGATGGCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
11840292 AGTACGAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCA
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* * * * * * *
11840357 GTGGCAC-TC-GTCAGGTTCTCCAATGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATTCAG
261 AT-GC-CGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * * *
11840420 CACCAGCACATGCCCTAGCCCAGCATGTGCTGTCGCAACCCTGGGTCTGGTTCGATCTTAGACTG
324 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* *
11840485 GTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGA
389 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * ** * * * ****
11840550 GCGCGTGGGTGCTCAACCGACCAGAAAGGCGGGATGCGCAAGCCGGTGATCGGCCCGGTCTTGGT
454 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* * * * * * * *
11840615 -CTGCGC-GGTG-TGTTACCGATCCT-A-CTGGTCCCGATCTTAGATTGGGTAATGAACTCCATC
519 GCTGCGCTGCTGCTG-CA-CAACCCTCATCCGGT-CCGATCTTAGACTGGG-AATGAACTCCGTA
* * * * *
11840675 TGCCTAAGTC-ACCAACGCAACGAGCAGGCGGGCCGGGCGGGCACGTAAAACGGTCGGCCAAAGA
580 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-CGGGCGGGCAC-T---AC-GTCGGCCAGAGA
*
11840739 GATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
639 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
11840804 ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
704 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* ** *
11840869 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT-TATGAT
769 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGA-GAT
** * *
11840933 TTTTTAAAATTTTTTCAAAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
833 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
11840991 ATTTTTGTTGGCACGCCCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
11841056 TTGAAAAAAGTGTCCTCATTTCAAACACTTTAATGGCTACTGACAGGAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
11841121 ATGCTCTTGAA-GGGGTGTGAGTTCTCAAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
11841185 AGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCCGGCCCCCCCGTTCACCGGAACCCC
196 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCC
* * * ** * *
11841250 AATGCCATCGGTCAGGTTCTCAGGCGATGCTCCGGTGATGGTGCCCCGAGGAAGAAAAATGCGAC
260 AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * ** ** **
11841315 ACCAGCAGATGCCC-ATGCCCATCATGCACTGCTACAACCCTCGGTCTGGTTTGATCTTAGACTG
325 ACCAGCACATGCCCGA-GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* *
11841379 GGAATGAACTCTGTATGCTTAGACGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
389 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* ** *
11841444 GCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCAGTCGGGTCCACCT
454 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC-CC-
* * * *
11841509 CTGCGTGCTGCTGATCCTGCTACTGCAACCCTTCGTCCGGTCTGATCTTAGACTGGGAATGAACT
517 CTGC-TGC-GCTG---CTGCTGC-ACAACCC-TCATCCGGTCCGATCTTAGACTGGGAATGAACT
* * ** *
11841574 CCGTATGCCTAAG-CAACCGATG-AA--A-CGGGCGGGCGGGCAGGCACTATATCGGCTAGAGAG
575 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * * *
11841634 ACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATTTTCATATTTGTG
640 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
*
11841699 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
705 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * ** * ** * *
11841764 TTCATGGTAAGACGACTCGTTTTTTATTTTTCACGATTTTTGACACTTTTTATGGTTCGGGATGT
770 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTT
*
11841829 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGCGATCCTTGT
835 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
11841885 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
11841950 TTGGAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
11842015 ATACTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAAGGGGCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
11842080 AGTACCAGCACCCATCGTACATTATGTGCGCACA-CCCCCGGCTCCCCCGATCGCCGGAACCCCA
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* * * *
11842144 ATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGTCCCGACGAAGAAAAATGTGGCA
261 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* *
11842209 CAAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA-CC-C--T-T-G---G-TC-----C----
326 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * * * *
11842255 -A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTAAGCCCAAGTCAACTCACGGAACGAGT
391 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * *
11842313 GTGCGGGCGC-CAAGTCAGCCAGAGGGGCGGGATGCG-AAGCCGAGGATCGG-CTGAGTCCCCCT
456 GTGCGGGCGCTC-AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCT
** *
11842375 -CTGCATGCTACCGATCTTGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAC
519 GCTGC--GCT---G--C-TGCTG-CACAACCCTCA-TCCGGTCCGATCTTAGACTGGGAATGAAC
* * *
11842439 TCCGTATACCTAAGCCAACCGACGAAACGAGTTGGCTGGCGGGCAGGCGGGCACTACGTCGGCCA
574 TCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGCGGGCACTACGTCGGCCA
* *
11842504 GAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATAT
635 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
11842569 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
700 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * * **
11842634 GATGTTTCATGGCAAGACGACTCATTTTCTATATTTT-ATGA-TTTCAAAATTTTTTGTAGTTCG
765 GAAGTTTCATGGCAAGACGACTCGTTTTCTAT-TTTTCACGATTTTCAAAACTTTTTGCGGTTCG
* *
11842697 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCATTGT
829 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
11842759 GTTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
11842824 TTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGACAGTAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
11842889 ATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * * * * *
11842953 AGTACTAGCACCCATCACACATCATTTGTGCACACCCCCCAGCCCCCCCGTTCGCCTGAACCACA
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* * * * *
11843018 ATGCTGGCGGTCAGGTTCT----C-A-G----G-CGATGGTACCCCGACAAAGAAAAATACGGCA
261 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * * *
11843072 CCAGCACATGCCC-AG-CCATCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTATAATGGG
326 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * *
11843135 AATCAACTCCGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACAAAACGAGC
391 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * *
11843200 GTGTGGGCGCTCAGCCGACTAGAGGGTCGGGATGCGTAAGCTGGGGATAGGTCGGGTCCCCCT-C
456 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTGC
* * *
11843264 TGCGTGCTACCGATCTTGCTGCCACAACACTCATTCTGGCCCGATCTTAGACTGGGAATGAACTC
521 TGC--GCT---G--C-TGCTG-CACAACCCTCA-TCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * *
11843329 TGTTTGCCTAACCCAACCGATGAAACGAGCGGGCGGACGGATGAGCGGGCACTACGTCGTCCAGA
576 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-G--G-GCGGGCACTACGTCGGCCAGA
* * *
11843394 GAGACGGGATGTGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
637 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
11843459 CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTACCTTATGCCTTCACGTGA
702 CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* ** * *
11843524 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTCTGAAACTTTTTATGGGTCGGG
767 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC-AAAACTTTTTGCGGTTCGAG
* *
11843588 A-TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGGTCCTTGT
831 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
11843647 ATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
11843712 TTG-AAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
11843776 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
11843841 AGTACCAGCACCCATCACACATCATGTGCG-ACACCCCCCGGCCCCCCCGATCGTCGGAACCCCA
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* *
11843905 ATGCCGTCGGTCAGG-T-TCC-AC---G----G-CGATGGTGCCCC-AGTGAAGAAAAATACGGC
261 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGC
* **
11843958 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGG
325 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
* * * *
11844023 GAATGAACTTCGTATGCTTAGACTGGGAAAGAACTCCATATGCCTAAGTCAACCCACGAAATGAG
390 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* *
11844088 TGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCTGGGGATCGGTCGGGTCCCCCT
455 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGGTCGGGTCCCCCT
* * * * * *
11844153 -CTGTGTGCTGTCGATTCTACTACTGCAACCCTCGGTCCGATCCGATCTCAGACTGGGAATGAAC
519 GC--TGCGCTG-C--TGCTGC-A---CAACCCTC-ATCCGGTCCGATCTTAGACTGGGAATGAAC
* * * * ** * *
11844217 TCCGTATGCCTAAGCCAACCAACGAAAGGAACGGACGGGCGGGC-ACCGC-AC--CGACCAGAGA
574 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGA
* * *
11844278 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTGGGTTGGTTTAGGCACATCTTCACATTTCT
639 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * ** * * *
11844343 GCATGCCAATGCCATTTTTATGGCTTGTAAATTTGTACAATGGTCCATTAAGGCATCACGTGAAG
704 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * **
11844408 TTTCATGGCAAGATGACTCGATTTT-TATTTTTCATGATTTTTGAAAC-TTTTGCGGTTCGAGAT
769 TTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGAT
* * *
11844471 TTTTTTAAATTTTTTCGGATGGAGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
833 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
11844529 ATTTTCGTTGGCATGCACAAAAAAATT-AGCTAAAAACTTGAAGTGTATAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
11844593 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
11844658 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGCGGCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
** *
11844723 AGTACCAGCACCCATCGCACATCATGTGTACACACCCCCCGG-CCCCCCGATCGTCGGAACCCCA
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* ** * * *
11844787 ATGCCGTCGGTCAGGTTCTTC-AGCGATGCTTTGACGATGGTGCCCTGACGAAGAAAAATGTGAC
261 ATGCCGTCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * * *
11844851 ACCATCGCATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCAATCTTAGACT--
325 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
* *
11844914 -ACA--AA-T--G-A-AC-T---CT--G--T-AA----G--T--CTAAGTCAACCCACGAAACAA
390 GA-ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* ** * * * *
11844954 GCGTACGGGCGCTCAGCCGTTCAGAGGGGTGGGATTCACAAGTCGGGGATCGGTCGGGTCCCCCT
454 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCC-
* * * * *
11845019 CTGCGTACTGCTGATCCTGCTGCTGCAACCCTTCATTCAGCCCGATCTTAGACTGGGAATGAACT
517 CTGC-TGC-GCTG---CTGCTGC-ACAACCC-TCATCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * *
11845084 CTGTATGCCTAAGCCAACCGACGAAATGAACGGGCAGGCGGGCGGGCGAACACTACGTCGACCAG
575 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GG-G--CACTACGTCGGCCAG
* * *
11845149 AGAGACGGGATACGTAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATT
636 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
11845214 TCTATGTGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGT-ACTTAAGCCTTCACGTG
701 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
11845278 AAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTGT-AAAACTTTTTGCAGTTCGG
766 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT-TCAAAACTTTTTGCGGTTCGA
* * * *
11845342 GATTTTTTTTAAATTTTTTCGCAAGGAGTTTTGGCCCCAAACATGGTAGACGAGATCCTTGT
830 GA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
11845404 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
11845469 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
11845534 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
11845599 TGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCCGATCGTCGGAACCCCA
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* * ** * * *
11845664 ATGTCGTCGGTCAGGTTCTCCGACGATGCTTCGGTGATGGTGCCCCGGCAAAGAAAAATGCGTCA
261 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * *
11845729 CCAGCACATTCTCGAGCCCAGCATGTGCTGCCGCAACCGTCGGTCTGATCCGATCTTAGACTGGG
326 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
*
11845794 AATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAAC-AAACGAG
391 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-ACGAAACGAG
* * * * * * * * *
11845858 TGTACGGGCACTCAACCGGCTAGAGGGGCGGGATGTGCAAGTCGGTGATC-GACTGGGTCCCCCT
455 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCT
* * * *
11845922 -CTGCG-TGCTG-T-CACAACCCTCGATCCGGTCTGATCCTAAACTGAGAATGAACTCCGTATGC
519 GCTGCGCTGCTGCTGCACAACCCTC-ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
**
11845983 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATG
583 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
**
11846048 CGCAAGCCGTGGATCGATAGAATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
648 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
* * *
11846113 TGCCATTTTTATGGCATGTAAATTCATACCATGGTCCCTAAAGCCTTCACGTGAAGTTTCAT-GC
713 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
11846177 AAGGCGACTCGTTTTCTATTTTTTCACGA-TTTCAAAAC-TTTTGCTGGTTTGGGATTTTTTTAA
778 AAGACGACTCGTTTTCTA-TTTTTCACGATTTTCAAAACTTTTTGC-GGTTCGAGA-TTTTTTAA
*
11846240 ACTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
840 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * * *
11846291 ATTTTTGTTGGCATGCA-AAAAAAACTTTAGCAAAAAATTCGAAGTGCACAAGATTTTGTAACCA
1 ATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
11846355 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTGA
65 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
11846420 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
130 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
11846485 AAGCACCAGCACCCATCGCACATCATGTGTGCACACCCCCCTGGCCCCCCCGATCGTCGGAACCC
195 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGCCGGAACCC
* ** *
11846550 CAATACCG-C---C--G------GAC-A------G--G-T--T-CTGCGACGAAGAAAAATACGG
259 CAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * * * * *
11846590 CACCAGCACATGGCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGATCCGATCTTACAATG
324 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * * * *
11846655 GGAATAAACTTCGCATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAATGA
389 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * ** * *
11846720 GCGTGCGGGCGTTCAGCTGGCCAGAAGGGCAAGATGTGCAAGCCGAGGATCGGTCGGGTCCCCCT
454 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCC-
* * ** * *
11846785 CTGCGTACTGCTGATCCTGCTGCCACAATCCTCAGTTGGGTCCAATCTTAGATTGGGAATGAACT
517 CTGC-TGC-GCTG---CTGCTG-CACAACCCTCA-TCCGGTCCGATCTTAGACTGGGAATGAACT
* * *
11846850 CCGTATTCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC--G--CTACGTCGGCCAGAGTG
575 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
*
11846911 ACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
640 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* *
11846976 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGT
705 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * *
11847041 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTT
770 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTT
* * * *
11847106 TTTTAAATTTTTTTGGAAGGAGTTTTGGACGCAAACTTGGTAGACGTGATCCTTGT
835 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
11847162 ATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
11847227 TTGAAAAAAGTGTCCCCATTTTAGCCACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* **
11847292 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGGCGAGGGATAGGGGGCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
11847357 AGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCA
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* * ** * *
11847422 ATGCCGTTGATCAGGTTCTCCGTTGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCTGCA
261 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* *
11847487 CCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAA--C-C---C---TCAG-TC-----C----
326 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
*
11847533 ---G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-TAGAACGAG
391 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAG
* * *
11847590 CATGCGGGCGCTCAGCC-ACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCTCTC
455 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CC-C-C
* * * * * * *
11847654 TACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTC
517 --C-TGCTG-CGCTGCTGCT-GCACAACCCTC-ATCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * *
11847719 CGTATGCCTAAGCCAACCAACAAAACGAGTGGGCGGACGGGCGGGCAGGCAATACGTCAGCCAGA
576 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA--C--TACGTCGGCCAGA
* * * *
11847784 GAGACGGGATGTGCAAGCCGTGGATAGATAGGGTGGCAAGTGGGTTTAGGCACATCTTCATATTT
637 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * *
11847849 CTATGTGCCAATCCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
702 CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* **
11847914 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAAGGTTCGAGA
767 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGA
* *
11847979 TTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
832 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
11848038 ATTTTTGTTGGCATGCA-AAAAAAATTCAGCAAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
11848102 TTGAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTATTGGGAGCAAACCTGTAAACTCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
11848167 ATGCTCTTT-AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
11848231 AGTACCAGCA-CCATCGCACATCATGTGCGTACA---------CCCCCCGATCGCCAGAACCCCA
196 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* * * * ** * * * *
11848286 ATGTCGTCGGTCAGGTTCTCTGGCGATGCTCAGGTGATGATGCCTCGACGAAGAAAAATGTGTCA
261 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * ** * * *
11848351 CCAGCACATGCTCGAGCCCAGTATGTGCTGTTGCAACCCTCGGTCTGATCCGATCTTAGACTAGA
326 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * *
11848416 AATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGATC
391 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * *
11848481 GTACGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAGGCCGGGGATCGGCCGAGTCCCCCT-C
456 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTGC
* * * *
11848545 TGCGTGCTGCCAATCCTGCTACTGCAACCCTCAGTCTGGTCTGATATTAGACTGGGAATGAACTC
521 TGC--GCTG-C--TGCTGC-A---CAACCCTCA-TCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * *
11848610 CATATGCGTAAGCCAACCGACGAAACGAGCGGATG-GGCAAGCGGGCGGGCACTACGTCGACTAG
576 CGTATGCCTAAGCCAACCGACGAAACGAGCGG--GCGG---GCGGGCGGGCACTACGTCGGCCAG
* *
11848674 AGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATT
636 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * *
11848739 TCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTG
701 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
** * *
11848804 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTTTGAG
766 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAG
* *
11848869 ATTTTTTAAAATTTTTTCGGATGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
831 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
11848929 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
11848994 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
11849059 ATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * *
11849124 AGTACAAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCACCCCTGATCGCCGGAACCCT
196 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCC
*
11849189 AATGCCGTCGGTCAAG-T-T----C--T-CT--GACGATGGTGCCCCGACGAAGAAAAATGCGGC
260 AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
** *
11849243 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCTTCAACCCTCGGGTC-GGTCCGATCTTAGACTA
325 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GGTCTGGTCCGATCTTAGACTG
* *
11849307 AGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
389 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * *
11849372 GCGTGCGGGCGCTCAGTCGGCCGGA-GGGCGGAATTCACAAGTCGGGGATCGGCCGGGTCCCCCT
454 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT--CCC-
* * * * * * * *
11849436 CTACGTGTTGTCGATCCTGCTGCTGCAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACT
516 C--C-TGCTG-CGCTGCTGCTGC-ACAACCCTC-ATCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
11849501 CCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGGGGGCGGGCACTACGTCAGCCAGAGAG
575 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * *
11849566 ACGGGATGCACAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTG
640 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
*
11849630 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
705 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * *
11849695 TTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTC-AGGATT
770 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGA-GATT
*
11849759 TTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
834 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * *
11849816 ATTTTTCTTGGCATGCACAAGAAAACTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
1 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
11849881 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAA
66 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
11849946 ATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATCAA-GGCC
131 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGGCC
* * * * *** *
11850010 AAGTACCAGCACCCATCGCAAATCATGTGTGCACACCCCCCGACCCCCCCGACCATTGGAATCCC
195 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCC
* *
11850075 AATACCGCCGGTCAGGTTCTCCGGA-GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
260 AATGCCGTCGGTCAGGTTCTCC-GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * * *
11850139 CACCAAG-ACATGCCCTAGCCCAGCATGTGCTGTCACAACCCTTGGTCTGGTCCGATCTTAGACT
324 CACC-AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT
* * * * * * *
11850203 GGGAATAAACTCCATATGCTTGGACTAGGAATGAACTCCGCATGCCTAAGTCAACCAACGAAATG
388 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* ** * *
11850268 AACGTGCGGGCGCTCAGCCGGCCAGAGGGGCTAGATGCACAAGCCGGGGATCGGTTGGGTCCCCC
453 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
* * *
11850333 T-CTGTGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAA
518 TGC--TGCGCTG-C--TGCTGC-A---CAACCCTCA-TCCGGTCCGATCTTAGACTGGGAATGAA
* *
11850397 CTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGACGGGCG
573 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
11850439 CTCAGCTGGC
Statistics
Matches: 11328, Mismatches: 1328, Indels: 814
0.84 0.10 0.06
Matches are distributed among these distances:
861 16 0.00
862 9 0.00
863 214 0.02
864 113 0.01
865 9 0.00
866 157 0.01
867 149 0.01
868 122 0.01
869 77 0.01
870 35 0.00
871 425 0.04
872 58 0.01
873 162 0.01
874 438 0.04
875 446 0.04
876 467 0.04
877 130 0.01
878 3 0.00
879 2 0.00
880 3 0.00
881 53 0.00
882 426 0.04
883 24 0.00
884 20 0.00
885 15 0.00
886 66 0.01
887 1076 0.09
888 613 0.05
889 169 0.01
890 154 0.01
891 440 0.04
892 241 0.02
893 527 0.05
894 1018 0.09
895 161 0.01
896 9 0.00
897 169 0.01
898 117 0.01
899 22 0.00
900 39 0.00
901 140 0.01
902 509 0.04
903 392 0.03
904 243 0.02
905 529 0.05
906 421 0.04
907 219 0.02
908 151 0.01
909 5 0.00
910 4 0.00
911 17 0.00
912 155 0.01
913 74 0.01
914 10 0.00
915 2 0.00
916 63 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (890 bp):
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTGC
TGCGCTGCTGCTGCACAACCCTCATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
Found at i:11848436 original size:26 final size:26
Alignment explanation
Indices: 11848407--11848460 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
11848397 GATCCGATCT
11848407 TAGACTAGAAATGAACTCCGTATGCC
1 TAGACTAGAAATGAACTCCGTATGCC
* *
11848433 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTAGAAATGAACTCCGTATGCC
11848459 TA
1 TA
11848461 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
TAGACTAGAAATGAACTCCGTATGCC
Found at i:11849327 original size:26 final size:26
Alignment explanation
Indices: 11849298--11849350 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11849288 TCGGTCCGAT
11849298 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
**
11849324 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
11849350 C
1 C
11849351 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:11850523 original size:159 final size:159
Alignment explanation
Indices: 11850225--11850588 Score: 534
Period size: 159 Copynumber: 2.3 Consensus size: 159
11850215 CATATGCTTG
* * * * * *
11850225 GACTAGGAATGAACTCCGCATGCCTAAGTCAACCAACGAAATGAACGTGCGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGTGCGGGCGCTCAGCCGGC
* * *
11850290 CAGAGGGGCTAGATGCACAAGCCGGGGATCGGTTGGGTCCCCCTCTGTGTGCTGCCGATCCTGCT
66 CAGAGGGGCGAGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCT
11850355 ACCGCAACCCTCAGTCC-AGTCCGATCTTA
131 ACCGCAACCCTCAGTCCGA-TCCGATCTTA
*
11850384 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCG-GACGGGCGCTCAGCTGG
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGTG-CGGGCGCTCAGCCGG
* *
11850448 CCAGAGGGGCGAGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGTTGCCGATCTTGC
65 CCAGAGGGGCGAGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGC
* * *
11850513 TGCCGTAACCCTCGGTCCGATCCGATCTTA
130 TACCGCAACCCTCAGTCCGATCCGATCTTA
* * *
11850543 GACTGGGAATGAACTCCCTATGCCTAAGCCAATCGACGAAACGAGC
1 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGC
11850589 AGGCTGGCAC
Statistics
Matches: 185, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
158 1 0.01
159 183 0.99
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (159 bp):
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCGAGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCT
ACCGCAACCCTCAGTCCGATCCGATCTTA
Found at i:11850610 original size:159 final size:159
Alignment explanation
Indices: 11850225--11850629 Score: 498
Period size: 159 Copynumber: 2.5 Consensus size: 159
11850215 CATATGCTTG
* * * * * * **
11850225 GACTAGGAATGAACTCCGC-ATGCCTAAGTCAACCAACGAAATGAACGTG-CGGGCGCTCAGCCG
1 GACTGGGAATGAACTCC-CTATGCCTAAGCCAACCGACGAAAAGAGCG-GACGGGCACTCAGCTA
* * *
11850288 GCCAGAGGGGCTAGATGCACAAGCCGGGGATCGGTTGGGTCCCCCTCTGTGTGCTGCCGATCCTG
64 GCCAGAGGGGCGAGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTG
11850353 CTACCGCAACCCTCAGTCCAGTCCGATCTTA
129 CTACCGCAACCCTCAGTCCAGTCCGATCTTA
* * *
11850384 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGACGGGCGCTCAGCTGGC
1 GACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAAAGAGCGGACGGGCACTCAGCTAGC
* *
11850449 CAGAGGGGCGAGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGTTGCCGATCTTGCT
66 CAGAGGGGCGAGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCT
* * *
11850514 GCCGTAACCCTCGGTCC-GATCCGATCTTA
131 ACCGCAACCCTCAGTCCAG-TCCGATCTTA
* * *
11850543 GACTGGGAATGAACTCCCTATGCCTAAGCCAATCGACGAAACGAGCAGG-CTGGCACT-ATG-TC
1 GACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAAAGAGC-GGACGGGCACTCA-GCT-
* *
11850605 AGCCAGAGAGGCGAGATGCGCAAGC
63 AGCCAGAGGGGCGAGATGCACAAGC
11850630 TGTAGATCGA
Statistics
Matches: 217, Mismatches: 23, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
158 4 0.02
159 211 0.97
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (159 bp):
GACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAAAGAGCGGACGGGCACTCAGCTAGC
CAGAGGGGCGAGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCT
ACCGCAACCCTCAGTCCAGTCCGATCTTA
Found at i:11851283 original size:26 final size:26
Alignment explanation
Indices: 11851247--11851299 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11851237 CCGGTCCAAT
11851247 CTTAGACTGGGAATCAACT-TCGTATG
1 CTTAGACTGGGAATCAACTCT-GTATG
*
11851273 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
11851299 C
1 C
11851300 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCTGTATG
Found at i:11852134 original size:895 final size:894
Alignment explanation
Indices: 11850380--11856796 Score: 8292
Period size: 895 Copynumber: 7.2 Consensus size: 894
11850370 CCAGTCCGAT
* * * *
11850380 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCG-GACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGTGCTCAG
* * * * *
11850444 CTGGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGTTGCCGATC
65 CTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
11850509 TTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * * * *
11850574 ATCGACGAAACGA----GCAGGCTGGCACTATGTCAGCCAGAGAGGCGAGATGCGCAAGCTGTAG
194 ACCGATGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
11850635 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * * *
11850700 GGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATGATTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
11850765 TTTTTATTTTTCACGATTTTCTGAAACTTTTTGTGGTTCAGGATTTTTTATAATTTTTTCAGAAG
389 TTTCTATTTTTCACGATTTT-TGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAG
* * * *
11850830 AAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGTCATGCACAAAAAAATTC
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
11850895 AACTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAATGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
11850960 TTTATTGGCTACTGGCAGCAAACCTGTTAAATCTCAAAATGCTCTTTAAGGGGGTGTGAGTTCTC
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
11851025 GAGGTTAGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * * * **
11851090 GCACACACACCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGAT
712 GTGCACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * * *
11851155 GCTCCGACGATGATGCCCCTACGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCAAGTG
777 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG
* * *
11851220 CTGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATCAACTTCGTATG
842 CTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATG
* * * *
11851273 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
11851338 TGGCTAGAGGGGTGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 TGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
11851403 TGCTACCACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCC-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
11851468 CCGACGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGATGGGATGCGTAAGCCATGGA
195 CCGATGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
11851533 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
11851598 GCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
11851663 TTCTATTTTTCATGATTTTTGAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
390 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGA
* ** *
11851728 ATTTTGGCCCCAAACTTTTTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAG
455 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
11851793 CTAAAAACTCGAAGTGTAGAAGATTTTGTAACCATTTGAAAAAAGTGTTCCCATTTCAGACACTT
520 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
11851858 TAATGGCTACTGGCAGCAAACATATAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCAAG
585 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
11851923 GTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG
650 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG
* * * *
11851988 CACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTTCGACGCTGCT
715 CACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
** * * * * * *
11852053 CCGGTGATGGTGCCTCGGCAAAGAAAAATGCGGCACTACCACATGCCCGAGGCCAGCATGTGCTG
780 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
* * * *
11852118 CCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
845 CCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATG
* * *
11852168 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
11852233 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGGCAATCC
66 TGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
11852298 TGCTGCCGCAACTCTCGGTCTAGTCCAATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCGA
131 TGCTGCCGCAACCCTCGGTC-CGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
11852363 CCGATGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATG-GACAAGCCGTGG
195 CCGATGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG-CAAGCCGTGG
* ***
11852427 ATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA-TTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
11852491 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
11852556 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCCGTTCAGGATTTTTTAAAATTTTTTCGAAAGG
389 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
** * * *
11852621 AGTTTTGGCCCCAAACTTGGTAGACACGATCCTTGTGTTTTTGTTGGCACGCACAACAAAATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
11852686 GCTAAAAACTCGGAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
11852751 TTAATGGCTACTGACAGCAAACCTGTCAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
11852816 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT
649 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT
* *
11852881 GCACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGATGATGC
714 GCACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* * * * * *
11852946 T-CAAGCGATGGTGCCTCGGCAAAGAAAAATGCGGCACCACCACATGCTCGAGCCCAGCATGTGC
779 TCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGC
* *
11853010 TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAA
843 TGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAA---C-T-T-C------------
11853075 TGAACTCCATATG
890 -G-------TATG
*
11853088 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
11853152 TCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGGTGGCGAT-
66 T-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
11853216 CTGCTGCTGCAACTCTCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCG
130 CTGCTGCCGCAACCCTCGGTC-CGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
11853281 ACCGATGAAACGAGCGGGCGGGCGGGCACTACACCGGCTAGAGAGACGGGATGCGCAAGCCGTGG
194 ACCGATGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
11853346 ATCGAGAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
11853411 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGATGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
** * *
11853476 TTTCTATTTTTCAC-AGTTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAT
389 TTTCTATTTTTCACGA-TTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAA-
* * * *
11853539 GGAGTTTAGGCCCCAACCTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
452 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
11853604 CAGCTAAAAACTCGAAGAGTACTAGATTTAGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
517 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
11853669 CTTTAGTTGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCACTTTAAGGGGGTGTGAGTTCTC
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
11853734 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
11853799 GTGCACACCCCCC-GG--CCCC---C--C-G-------AT--CGTCGGTCAGGTTCTCTGGCGAT
712 GTGCACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * *
11853846 GCTCCAACGATGGTGCCCCGACGAAGAAAAATACAGCACCAACACATGCCCGAGCCCAGCATGTG
777 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG
* * * * * * *
11853911 CTACCACAACCCTCGATTCGGTCTAATCTTAGACTGGGAATGAACTCCATATG
842 CTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATG
*
11853964 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
** * * * * ***
11854029 CAGCCAAAGGGGCGGGATGCGCAAGCTGGGGATCGATCGAGTCCCCCTCCATGTGCTGCCGATCC
66 TGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * * *
11854094 TGTTGCCACAACCCTCAGTCTGGCCTGATCTTAGATTGGGAATGAACTCCGTATGACTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGTCC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
11854159 CCGATGAAATGAGCGGGCGGGCGGGTGGGCGGGCACTATGCCGACCAGAGAGACGAGATGC-CAA
195 CCGATG-AA--A-CGAGCGGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
11854223 CCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAA
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
11854288 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* **
11854353 GACTCGTTTTCTATTTTTCATGATTTTTGAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
382 GACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
* * * *
11854418 TCAGAAGGACTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
446 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
11854483 AAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
511 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
11854548 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAA-GGGGTGCT-
576 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-TG
* *
11854611 AGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCAC
640 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
11854675 ATCATGTGCGCACACCCCCACGGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGG---T
705 ATCATGTGTGCACACCCCC-CGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
11854737 -------T-CTCCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAACACCTGCCCGAGCCC
769 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* *
11854794 AGCATTTGCTGTCGCAA-CC-C--T-CGGT-C---C----A----G--T---C--CG-AT-
834 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATG
* * * *
11854829 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACAAAATGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * ** *
11854894 TAGCCAGAAGGGCACGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 TGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
11854959 TGCTGCCGCAACCATCGGTCCGATCTAAACTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
11855024 CCGATGAAACGAGCAGGCGGGCAGGCACTATGCCGGCCATAGAGACGGGATGCGCAAGCCGTGGA
195 CCGATGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
11855089 TCGATAGGGTGGTAGGTGGGTGTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * * *
11855154 GCTCGTAAATTCATATAAGGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCGAGACGACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
11855219 TTCTATTTTTCACGTTTTTTGAAACTTTTTAG-AGTTCAGGATTTTTTAAAACTTTTTCGAAAGT
390 TTCTATTTTTCACGATTTTTGAAACTTTTT-GCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
* *
11855283 AGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGAATTTTTGTTGGCATGCACAAAAAAATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
11855348 GCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC-
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
11855412 TTAATGGCTACTAGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * ** *
11855477 GGTTAGATGAGGGATAGGGGGCCAATATAA-GGCCATGCGCCAGCACCCATCGCACATCATATGT
649 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT
*
11855541 GCACACCCCCCTCGGCCCCACCGATCGTCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGACGA
714 GCACACCCCCC-GGGCCCC-CCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGA
* * ** * * *
11855605 TCCGCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAACAAATGTCCGAGCCCAGCATGT
776 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGT
* *
11855670 GCTGCCGCAACCCTCGGTTCGGTCTAATCTTAGACTGGGAATGAACTTCGTATG
841 GCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATG
* *
11855724 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * *
11855789 CGGCCAGA-GGG-GGGATGCGTAAGCCGAGGATTGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
66 TGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * * * * **
11855852 TACTATCGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAATTCTGTATGCCTAAGCTGA
131 TGCTGCCGCAACCCTCGGTCCG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * **
11855917 CCGACGAAACGAGCAGGCGGGTGGGCGGGCGGGAACTACGTCGGCTGGAGAGACGGGATGCGCAA
195 CCGATGAAAC--G-A-GC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
11855982 GCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTG-AGTGCCAATGCC
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCC
11856046 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
11856111 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
381 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
* * * * *
11856176 TTGGAAGGAGTTTTGGCCACAAAATTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAA
446 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
11856241 AAAATTCAGCTAAAAACTTGAGGCGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTT
511 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
11856306 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGA
576 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
11856371 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACA
641 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
11856436 TCATGTGCGCACACCCCCCGGGCCCTCCGATCGTCGAAAACCCAATACCGACGGTCAGGTTCTCC
706 TCATGTGTGCACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * *** *
11856501 GGCGATGCTCCTACGGTGGTGCCCCGGCGAAGAAAAATGTAACACCAACACATGCCCGAGGCCAG
771 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
*
11856566 CATGTGCTGTCGCAACCCTCGGTCC-G----ATC-----C---G-AT---C-T--TA-G
836 CATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATG
* * *
11856604 ----G-CTGGGAATGAACTCCATATGCGTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * *
11856663 TCGACCAGAAGGGCGAGATACACAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
66 T-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * * * *
11856728 ATGCTGACATAACCCTCGGTCCAGTCTATATGCTTAGACTGGGAATGAACTCTGTACGCCTAAGT
130 CTGCTGCCGCAACCCTCGGTCC-GTCCA-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGC
11856793 CAAC
192 CAAC
11856797 TCACGAAATA
Statistics
Matches: 4872, Mismatches: 512, Indels: 294
0.86 0.09 0.05
Matches are distributed among these distances:
856 46 0.01
857 261 0.05
858 194 0.04
861 8 0.00
862 1 0.00
864 2 0.00
865 170 0.03
866 3 0.00
867 1 0.00
868 1 0.00
869 65 0.01
870 2 0.00
871 1 0.00
872 1 0.00
873 1 0.00
874 5 0.00
875 61 0.01
876 123 0.03
877 117 0.02
878 7 0.00
879 32 0.01
880 2 0.00
881 10 0.00
882 2 0.00
883 57 0.01
884 184 0.04
885 233 0.05
886 8 0.00
887 7 0.00
888 2 0.00
889 1 0.00
890 3 0.00
891 69 0.01
892 2 0.00
893 290 0.06
894 533 0.11
895 597 0.12
896 192 0.04
897 179 0.04
898 2 0.00
899 2 0.00
900 4 0.00
901 442 0.09
902 219 0.04
903 42 0.01
904 2 0.00
911 1 0.00
912 1 0.00
914 1 0.00
917 4 0.00
919 181 0.04
920 498 0.10
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
TGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCCGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGATGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGC
ACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATG
Found at i:11852178 original size:26 final size:26
Alignment explanation
Indices: 11852142--11852194 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11852132 CCGGTCCGAT
*
11852142 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
11852168 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
11852194 C
1 C
11852195 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:11852907 original size:894 final size:894
Alignment explanation
Indices: 11844917--11856625 Score: 7155
Period size: 887 Copynumber: 13.0 Consensus size: 894
11844907 TTAGACTACA
* * * * * * **
11844917 AATGAACTCTGTAAGTCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGCCGTTCAGAGGG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * * * ** * * *
11844982 GTGGGATTCACAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTACTGCTGATCCTGCTGCTGCAA
66 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
** * * * * *
11845047 CCCTTCATTCAGCCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATG
131 CCC-TCGGTCTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG--A--
** * * * *
11845112 AACGGGCAGGCGGGCGGGCGAACACTACGTCGACCAGAGAGACGGGATACGTAAGCCGTGGATCG
191 AAC--G-A-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* **
11845177 ATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
252 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
* * *
11845242 TGAAAATTCATACAATGGT-ACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTC
317 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * * *
11845306 TATTTTTCACGATTTGTAAAACTTTTTGCAGTTCGGGATTTTTTTTAAATTTTTTCGCAAGGAGT
382 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGA-TTTTTTAAAATTTTTTCGAAAGGAGT
* *
11845371 TTTGGCCCCAAACATGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
446 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
11845436 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
511 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
11845501 ATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
576 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
11845566 TTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGTA
641 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCA
* * *
11845631 CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTTC
706 CACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
** * * * * * *
11845696 GGTGATGGTGCCCCGGCAAAGAAAAATGCGTCACCAGCACATTCTCGAGCCCAGCATGTGCTGCC
771 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCC
* * * * * *
11845761 GCAACCGTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG
836 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* * ** * *
11845820 AATGAACTCCGTATGCCTAAGTCAACCCAAC-AAACGAGTGTACGGGCACTCAACCGGCTAGAGG
1 AATGAACTCCGTATGCCTAAGTCAACCC-ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
* * * * *
11845884 GGCGGGATGTGCAAGTCGGTGATCGACTGGGTCCCCCTCTGCGTGCTGTCAC-AACC--CT--CG
65 GGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTG-C-CGATCCTGCTGCCG
* * * * *
11845944 --A-TC-CGGTCTG----ATCCTAAACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
128 CAACCCTCGGTCTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
*
11846001 CGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
193 CGA----GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
** * *
11846066 AGAATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCATG
254 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
* * *
11846131 TAAATTCATACCATGGTCCCTAAAGCCTTCACGTGAAGTTTCAT-GCAAGGCGACTCGTTTTCTA
319 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** ** * *
11846195 TTTTTTCACGA-TTTCAAAAC-TTTTGCTGGTTTGGGATTTTTTTAAACTTTTTTCGGAAGGAGT
384 -TTTTTCACGATTTTTGAAACTTTTTGC-GGTTCAGGA-TTTTTTAAAATTTTTTCGAAAGGAGT
*
11846258 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAACTTTAGC
446 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGC
* * * *
11846322 AAAAAATTCGAAGTGCACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
510 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
11846387 AATTGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
575 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
11846452 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGTGC
640 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGC
* *
11846517 ACACCCCCCTGGCCCCCCCGATCGTCGGAACCCCAATACCG-C---C--G------GAC-A----
705 ACACCCCCC-GGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
** * * * *
11846565 --G--G-T--T-CTGCGACGAAGAAAAATACGGCACCAGCACATGGCCAAGCCCAGCATGTGCTG
769 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
* * * * * * * * **
11846622 CTGCAACCCTCGGTCTGATCCGATCTTACAATGGGAATAAACTTCGCATGCTTAGACTGGG
834 CCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* * * * * *
11846683 AATGAACTCCGTATGCCAAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAGCTGGCCAGAAGG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
** * * ** * * *
11846748 GCAAGATGTGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTACTGCTGATCCTGCTGCCACAA
66 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
* * * * *
11846813 TCCTCAGT-TGGGTCCAATCTTAGATTGGGAATGAACTCCGTATTCCTAAGCCAACCGACGAAAC
131 CCCTCGGTCT--GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
* * * * *
11846877 GAGCGGGCGGGCAGGCGCTACGTCGGCCAGAGTGACGGGATGCGCAAGTCGTGGATCGATAGGGT
194 GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
11846942 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
259 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
*
11847007 TCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
324 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * * * * * * *
11847072 CATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGACG
389 CACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
*
11847137 CAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTC
454 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
11847202 GAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGCCACTTTAATGGCTAT
519 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* **
11847267 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGGCGAG
584 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
11847332 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCC
649 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCC
** ** * * **
11847397 GACCCCCCCGATCACCGGAACCCCAATGCCGTTGATCAGGTTCTCCGTTGATGCTCCGACGATGG
714 GGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * * *
11847462 TGCCCCGACAAAGAAAAATGCTGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCT
779 TGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
11847527 CA-----GTCCGATC-----C-------G--------AT-CTTAGACTGGG
844 CAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* * * *
11847552 AATGAACTCCGTATGCCTAAGTCAACCCA-TAGAACGAGCATGCGGGCGCTCAGCC-ACCAGAGG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
* ** * * * *
11847615 GGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCTCTCTACGTGCTGTCGATCCTGCTACCGCA
65 GGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA
* * * **
11847680 ACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCAACAAAAC
130 ACCCTCGGTCT-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
* * * * *
11847745 GAGTGGGCGGACGGGCGGGCAGGCAATACGTCAGCCAGAGAGACGGGATGTGCAAGCCGTGGATA
194 GA----GCGGGCGGGCGGGCA--C--TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * ** *
11847810 GATAGGGTGGCAAGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATCCCATTTTTATGGC
251 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
*
11847875 TTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
316 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* ** *
11847940 CTATTTTTCACGATTTTCGAAACTTTTTAAGGTTC-GAGATTTTTTAAAATTTTTTC-AGAAGGT
381 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGA-AAGGA
11848003 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAG
444 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
11848067 CAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACACTT
509 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
11848132 TAATGGCTATTGGGAGCAAACCTGTAAACTCTCAAATGCTCTTT-AGGGGGTGTGAGTTCTCGAG
574 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
11848196 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCG
639 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG
* * * * * *
11848260 TACA---------CCCCCCGATCGCCAGAACCCCAATGTCGTCGGTCAGGTTCTCTGGCGATGCT
704 CACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* ** * * * * * * *
11848316 CAGGTGATGATGCCTCGACGAAGAAAAATGTGTCACCAGCACATGCTCGAGCCCAGTATGTGCTG
769 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
** * * * * * * *
11848381 TTGCAACCCTCGGTCTGATCCGATCTTAGACTAGAAATGAACTCCGTATGCCTAGACTGGG
834 CCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* * * ** *
11848442 AATGAACTCCGTATGCCTAAGTCAACCCACAAAACGATCGTACGGGCACTCAGCCGACCAGAGGG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * * * * *
11848507 GCGGGATGCGCAGGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCCAATCCTGCTACTGCAA
66 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
* ** * * * *
11848572 CCCTCAGTCTGGTCTGATATTAGACTGGGAATGAACTCCATATGCGTAAGCCAACCGACGAAACG
131 CCCTCGGTCT-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
* * * *
11848637 AGCGGATGGGCAAGCGGGCGGGCACTACGTCGACTAGAGAGACGGGATGCGCAAGCTGTGGATCG
195 AGC-----GG---GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
11848702 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATACCATTTTTATGGCT
252 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
*
11848767 TGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
317 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
11848832 TATTTTTCACGATTTTTGAAACTTTTTGGGGTT-TGAGATTTTTTAAAATTTTTTCGGATGTAGT
382 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGAAAGGAGT
11848896 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
446 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
11848961 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
511 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
11849026 ATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGT
576 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
11849091 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGTGCA
641 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCA
* * * * *
11849156 CACCCCCCCGGCACCCCTGATCGCCGGAACCCTAATGCCGTCGGTCAAG-T-T----C--T-CT-
706 CACCCCCCGGGC-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
*
11849211 -GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
770 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGC
** * ** *
11849275 TTCAACCCTCGGGT-CGGTCCGATCTTAGACTAAGAATGAACTCCGTATGCTTAGACTGGG
835 CGCAACCCTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* * * *
11849335 AATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGCCGGA-GG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * * * * * * * *
11849399 GCGGAATTCACAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGTTGTCGATCCTGCTGCTGCAA
66 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
**
11849464 CCCTCGGT-TCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
131 CCCTCGGTCT-G-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
* * * *
11849528 GAGCGGACGGGGGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATA
194 GA---G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* ***
11849593 -GGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGT
255 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
*
11849657 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
320 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* ** * * *
11849722 TTTTCACAATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAATGAGTTTTG
385 TTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
* * *
11849787 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAGAAAACTCAGCTAAAA
450 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
11849852 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGG
515 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
11849917 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGA
580 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
11849982 TGAGGGATAGGGGGCCAATATCAA-GGCCAAGTACCAGCACCCATCGCAAATCATGTGTGCACAC
645 TGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACAC
** * * * * * *
11850046 CCCCCGACCCCCCCGACCATTGGAATCCCAATACCGCCGGTCAGGTTCTCCGGA-GATGCTCCGA
709 CCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GACGATGCTCCGA
* * * *
11850110 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAAGACATGCCCTAGCCCAGCATGTGCTGTCAC
773 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGC
** * * * *
11850175 AACCCTTGGTCTGGTCCGATCTTAGACTGGGAATAAACTCCATATGCTTGGACTAGG
838 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* * * * *
11850232 AATGAACTCCGCATGCCTAAGTCAACCAACGAAATGAACGTGCGGGCGCTCAGCCGGCCAGAGGG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
** * *** * *
11850297 GCTAGATGCACAAGCCGGGGATCGGTTGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCGCAA
66 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
* * * * *
11850362 CCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAG
131 CCCTCGGT-CTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
* * * * * * * * *
11850427 AGCGGACGGGC--GCTC-A-GCTGGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGATCGGGTC
195 AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT-
** ** * * * * * *** * * * *
11850488 CCCCTCTGTGTG-TT-GCCGATCTTGCTGCCGTAACCCT-C-GGTCCGAT-CCGA-TCTTA-GAC
259 --GGTAGGTGGGTTTAGGC-A-CAT-CT-TCATATTTCTACATG-CCAATGCC-ATTTTTATGGC
** ** * * * * **
11850546 -TGGGAATGAACTCCCTAT-G--CC-TAAGCCAATCGACGAAACGAGCAGGCTGGCACTATGTCA
316 TTGTAAATTCA-T-ACAATGGTCCCTTAAGCC-TTC-ACG---TGA--A-G-T--TTC-ATG---
* **** * *** *** * *** * *
11850606 GCCAGAGAGGCGAGATGCGCAAGCTGTAGAT--CGATAGGGTG---GTAGGTG-GGTTTAGGCAC
364 G-CA-AGA--CGA-CT-CGTTTTCTATTTTTCACGAT-TTTTGAAACTTTTTGCGGTTCAGG-AT
* * * * * * * * * *** * * *
11850665 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTA-CCTTA
421 TTTTTAAAATTT-T---TTCGAAAG-GA-GTTT-TGGC-CCCAAA--C-T----TGGTAGACGTG
* ** * *** *** *
11850729 AGCCTTCACGTGAAGTTTCTTGGCAAGATG-ATTCGTTTTTTATTTTTCACGATTTTCT-GAAAC
471 ATCCTT---GT-ATTTTTGTTGGC---ATGCA--C----AAAAAAATTCA-G-----CTAAAAAC
**** * * * ** * * *
11850792 TTTTTGTGGTTCAGGATTTT-TTATAATTTTTTCAGAAGAAGTTTTGGTCCCAAACTTGGT-AGA
517 TCGAAGT-GTACAAGATTTTGTGACCA---TTTGA-AAAAAG---T-GTCCC-CA-TT--TCAGA
** * * * *** *** *
11850855 CGTGATCCTTGT-AT-TTTTCTTGTCATGCACAA----AAAAAT-TC-AA--CT-AAAAACTCGA
569 C---A--CTT-TAATGGCTAC-TGGCA-GCA-AACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * * * *** * * ** * ** *
11850909 AGT--G-T-ACAAGATTT--T--GGGACCA-TTTG--AAAAAAATGTCCCCA-TTTCAGACACTT
625 TGTGAGTTCTCGAGGTTTGATGAGGGA-TAGGGGGCCAATATAA-GGGCCAAGTACCAG-CAC-C
* * * * ** * **** ** ** * **
11850962 TATTG-GC-T-A-CTG-GCAGCA--AACC-TG---TTAAATC-TCAAAATGCTCTTTAAGGGGGT
686 CATCGCACATCATGTGTGCA-CACCCCCCGGGCCCCCCGATCGTCGGAA--C-C-CCAATGCCGT
* * * * * * * * * ***
11851015 --GTGA-GTTCT-CGAGGTTAGAT--GAGGGATAGG-G----GGCCAA-TATAA-G-GGCTAAGT
746 CGGTCAGGTTCTCCGACGAT-GCTCCGA-CGAT-GGTGCCCCGACGAAGAAAAATGCGGC-ACCA
* * * * * * *** *
11851066 AC-CA-GCACCCATCGCACATCATGTGC--ACACACACCC-C-GGCCCCCCCGATC---G--T-C
807 ACACATGC-CCGA--GCCCAGCATGTGCTGCCGCA-ACCCTCAGTCCGGTCCGATCTTAGACTGG
* * * *
11851119 G---GAACCCCA-ATGC-CA-TC-GGT
868 GAATGAACTCCATATGCTTAGACTGGG
* * ** * * * * ***
11851139 CAGGTTCTCCGGTGATGCTCCGACGATGATGCCCCTACG-AA-GAAAAATGC--G-G--CA-CC-
1 AATGAACTCC-GT-ATG--CCTAAG-TCA--ACCC-ACGAAACG-AGCGTGCGGGTGCTCAGCCG
** * * ** * ** * * * *** * ** * * *
11851195 AACACA--TGCTCGA-GC-CCAGCAAGTGCT-G-TCGCAACCCTCAGTCCG-G-T-CCAATCTTA
57 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCT-
* ** ** * *
11851251 GACTG--GGAA---TC-AACT-TCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
121 G-CTGCCGCAACCCTCGGTCTGTCCAAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * ** * *
11851309 CCCATGAAACGA----GCGTGTGGGTACT-CAGCTGGCTAGAGGGGTGGGATGCGCAAGTCGGGG
184 CCGATGAAACGAGCGGGCGGGCGGGCACTAC-GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* ****** * * * * * * *** * *
11851369 ATCGATCGGGTCCCCCTCTGCGTGCT-GTCGATCCTGCTACCACAACCCT-C-GGTCCAGT-CCA
248 ATCGATAGGGT-GGTAGGTGGGT-TTAGGC-A-CAT-CT-TCATATTTCTACATG-CCAATGCCA
* * * ** ** * * ** ** ***
11851430 ATCTTA-GAC-TGGGAATGAACTCCGTAT-G--CC-TAAGCCAACCGACGAAACGAGCGGGCGGG
306 TTTTTATGGCTTGTAAATTCA-TAC-AATGGTCCCTTAAGCC-TTC-ACGTGA--AG-TTTC---
** * * ** *** *** * * ** * ** **
11851489 CGGGCACTACACCGGC-CAGAGAGATGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTG-G
361 ATGGCA--AGA-CGACTC---G-TTTTCTATTTTTCA-CGAT-TTTTGA-A-ACT--T-TTTGCG
* ** * * * * * * * * * * *
11851552 GTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATCCATACAAT
412 GTTCAGG-ATTTTTTAAAATTT-T---TTCGAAAG-GA-GTTT-TGGC-------CCCAAAC-TT
** * * * ** ** * * ***
11851617 GGT-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-ACAACTCGTTTTCTATTTTTCATGATT
461 GGTAGACGTGATCCTT---GT-ATTTTTGTTGGCATGCACAA---------AAAAATTCA-G---
* ** **** * * ** * ** *** *
11851680 TTTGAAACTTTTTGGGGTTCGGGATTTT-TTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACT
509 CTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCA---TTT--GAA--AAAAGTGTCCCC--A--
* *** ** * * **
11851744 TTTTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCATAA----AAAAATTCAGCTAAAAACTC-
562 TTTCAGAC---A--CTT-TAATGGCTACTGGCA-GCA-AACCTGTAAAA-TC-TC-AAATGCTCT
* * ** ** * * **** * * * *
11851803 -GAA----GTGTAGAAGATT-TTGTAACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAAT
616 TTAAGGGGGTGT-G-AG-TTCTCG--A-GGTTTG--ATGAGGGAT---A-GGGGGCCAATATAAG
* * ** ** *** * * ** ****** * *** *
11851862 GG-CTACTGGCAGCAAACATATAAAATCTCAAATGCTCTTTA-ATGGGGTGTGAGTTCTCAAGGT
669 GGCCAAGTACCAGCACCCATCGCACA--TC--ATG-TGTGCACACCCCCCG-G-G--CCCCCCGA
* * ** *** * * * * * *
11851925 TTGATGAGGGATAGGGGTCCAATATAAG--GGCCAAGTAC-CAGCACCCATCGC-AC-ATC-ATG
725 TCG-T--CGGA-A---CCCCAAT-GCCGTCGGTCAGGTTCTCCG-A-CGAT-GCTCCGA-CGATG
** * **** * * * *
11851984 TGTGCACACCCCCCG-GGCCCCCCGATCGTCGGAACC-CCA-ATGTCGCCG-G-TCAG---GTTC
778 -GTG--C-CCCGACGAAG---AAAAAT-G-CGGCACCAACACATG-C-CCGAGCCCAGCATGTGC
* * ** * * *
11852041 T-TCG--ACGCT--GCTCCGGT--GATGGT-GCCTCGGCAAAGAAAAATGCGGCACTACCACATG
832 TGCCGCAACCCTCAG-TCCGGTCCGATCTTAGACT-GG----G---AAT---GAACT-CCATATG
** * **
11852098 CCCGAGGC-CAG
884 -CTTAGACTGGG
* ** * ** * **** * * * ***
11852109 CATGTGCTGCCGCAACCCTCAGTCCGGTC-CG-ATCTTAGAC-TG-GGAATGAACTCCA-TATGC
1 AATGAACT-CCGTATGCCTAAGTCAACCCACGAAAC-GAG-CGTGCGG-GTG--CT-CAGCCGGC
* *** * * * * *** * *** ** * * *
11852169 TTAGAATGGGAATGAACTCCGTATGCCTAAG-TCAACCCATGAAACGAGCGTGTGGGTGCTCAGC
59 -CAG-A-GGGGCGGGA-TGCGCAAGCCGGGGATCGA-CC--GGGTC-CCCCTCTGCGTGCT--GC
* * * * ** * ** * *
11852233 CG-GCCAGAGGGGCGGGATG-CGTAAGCCGGGGATCGACCGGGTCCCCCTCTGCATG-CTGGCAA
114 CGATCC-----TGC----TGCCGCAA-CC----CTCGGTC-TGT-CCAATCT-TA-GACTGGGAA
*** * * * * ** * * * ***
11852295 TCCTGCTGCCGCAACT-CTCGGTCTAGTCCAATCTTAGACTAGGAATAAAC--TC-CGTATGC-C
161 T-GAACT-CCG-TA-TGC-C--T-AAG-CCAA-C--CGA-T-GAAACGAGCGGGCGGGCGGGCAC
* * * ** * * ** * *
11852355 TAAGCCGACCGATGAAACGAGCGGGCGGGCGGGCACTACACCG-GCCAGAGAGACGGGATGGACA
212 TACGCCGGCC-A-GAGA-GA-CGGG-ATGC--GCA--A-GCCGTG-GATCGATA-GGG-TGG--T
**
11852419 AGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
262 AG--GTGG--------------------GTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
11852484 A-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
305 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
11852548 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCCGTTCAGGATTTTTTAAAATTTTT
370 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
** * * *
11852613 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACACGATCCTTGTGTTTTTGTTGGCACGCACAAC
435 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
11852678 AAAATTCAGCTAAAAACTCGGAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
500 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
11852743 CAGACACTTTAATGGCTACTGACAGCAAACCTGTCAAATCTCAAATGCTCATTAAGGGGGTGTGA
565 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
11852808 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
630 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
11852873 TCATGTGTGCACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCC
695 TCATGTGTGCACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * * * *
11852938 GATGATGCT-CAAGCGATGGTGCCTCGGCAAAGAAAAATGCGGCACCACCACATGCTCGAGCCCA
760 GACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
11853002 GCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
824 GCATGTGCTGCCGCAA-CC-C--T-C-A---G-TC-----C--GG--T---C--CG-AT-CTTAG
*
11853067 ATTGGGAATGAACTCCATATGCTTAGACTGGG
863 ACTGGGAATGAACTCCATATGCTTAGACTGGG
* *
11853099 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCGGCCAGAGGG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * * * *
11853164 GCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGGTGGCGAT-CTGCTGCTGCAA
66 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
* * * *
11853228 CTCTCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCGACCGATGAAACG
131 CCCTCGGTCT-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
* * *
11853293 AGCGGGCGGGCGGGCACTACACCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGAGAGGGTG
195 AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
*
11853358 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
260 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
11853423 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGATGACTCGTTTTCTATTTTTC
325 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
** * * * *
11853488 AC-AGTTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAATGGAGTTTAGGCCC
390 ACGA-TTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
* * *
11853552 CAACCTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
454 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * * *
11853617 GAAGAGTACTAGATTTAGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTTGCTAC
519 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
11853682 TGGCAGCAAACCTGTAAAATCTGAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
584 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
11853747 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCC
649 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCC
* * *
11853812 -GG--CCCC---C--C-G-------AT--CGTCGGTCAGGTTCTCTGGCGATGCTCCAACGATGG
714 GGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * * *
11853859 TGCCCCGACGAAGAAAAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTACCACAACCCT
779 TGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* **
11853924 C-GATTCGGTCTAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
844 CAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* * *
11853975 AATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAAAGGG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * * *** * *
11854040 GCGGGATGCGCAAGCTGGGGATCGATCGAGTCCCCCTCCATGTGCTGCCGATCCTGTTGCCACAA
66 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
* * * * *
11854105 CCCTCAGTCTGGCCTGATCTTAGATTGGGAATGAACTCCGTATGACTAAGCCAACCGATGAAATG
131 CCCTCGGTCTGTCC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AA--
* * * * *
11854170 AGCGGGCGGGCGGGTGGGCGGGCACTATGCCGACCAGAGAGACGAGATGC-CAACCCGTGGATCG
192 A-CGAGCGGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
11854234 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCT
252 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
11854299 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
317 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** *
11854364 TATTTTTCATGATTTTTGAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC-AGAAGGAC
382 TATTTTTCACGATTTTTG-AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGA-AAGGAG
* *
11854428 TTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
445 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
11854493 TAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTT
510 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
11854558 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAA-GGGGTGCT-AGTTCTTGAG
575 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTCGAG
* *
11854621 GTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCG
639 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG
* *
11854685 CACACCCCCACGGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGG---T-------T-C
704 CACACCCCC-CGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* * * *
11854739 TCCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAACACCTGCCCGAGCCCAGCATTTGCT
768 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT
* *
11854804 GTCGCAA-CC-C--T-C-G---G-TC-----C-----A-G---TCC-GAT-CTTAGACTGGG
833 GCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* * * * ** *
11854840 AATGAACTCCGTATGCCTAAGTCAAGCCACAAAATGAGCGTGCGGGTGCTCAACTAGCCAGAAGG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
** *
11854905 GCACGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
66 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
* * * * *
11854970 CCATCGGTCCGATCTAAACTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACG
131 CCCTCGGTCTG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
* * * *
11855035 AGCAGGCGGGCAGGCACTATGCCGGCCATAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
195 AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
11855100 GTAGGTGGGTGTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTCGTAAATT
260 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
* * * *
11855165 CATATAAGGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTC
325 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * *
11855230 ACGTTTTTTGAAACTTTTTAG-AGTTCAGGATTTTTTAAAACTTTTTCGAAAGTAGTTTTGGCCC
390 ACGATTTTTGAAACTTTTT-GCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
* *
11855294 CAAACTTGGTTGACGTGATCCTTGAATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
454 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
11855359 GAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC-TTAATGGCTAC
519 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
11855423 TAGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTAGATGAG
584 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* ** *
11855488 GGATAGGGGGCCAATATAA-GGCCATGCGCCAGCACCCATCGCACATCATATGTGCACACCCCCC
649 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCC
* * * **
11855552 TCGGCCCCACCGATCGTCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGACGATCCGCCGGTGA
714 -GGGCCCC-CCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGA
* * *
11855616 TGGTGCCCCGACGAAGAAAAATACGGCACCAACAAATGTCCGAGCCCAGCATGTGCTGCCGCAAC
776 TGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * ** * *
11855681 CCTCGGTTCGGTCTAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGG
841 CCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* *
11855735 AATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGA-GG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * * * * * **
11855799 G-GGGATGCGTAAGCCGAGGATTGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTATCGCAA
66 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
* * * * ** *
11855863 CCCTCGGTCTGATTCGATCTTAGACTGGGAATGAATTCTGTATGCCTAAGCTGACCGACGAAACG
131 CCCTCGGTCTG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC-
* * **
11855928 AGCAGGCGGGTGGGCGGGCGGGAACTACGTCGGCTGGAGAGACGGGATGCGCAAGCCGTGGATCG
194 -G-A-GC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
11855993 ATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGA-GTGCCAATGCCATTTTTATGGC
252 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCCATTTTTATGGC
11856057 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
316 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
11856122 CTATTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGT
381 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGT
* * * *
11856187 TTTGGCCACAAAATTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
446 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * * * *
11856252 AAAAACTTGAGGCGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTA
511 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
11856317 ATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
576 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
11856382 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCA
641 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCA
* * * * * *
11856447 CACCCCCCGGGCCCTCCGATCGTCGAAAACCCAATACCGACGGTCAGGTTCTCCGGCGATGCTCC
706 CACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
* * * *** * *
11856512 TACGGTGGTGCCCCGGCGAAGAAAAATGTAACACCAACACATGCCCGAGGCCAGCATGTGCTGTC
771 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCC
* * *
11856577 GCAACCCTCGGTCCGATCCGATCTTAGGCTGGGAATGAACTCCATATGC
836 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
11856626 GTAAGTCAAC
Statistics
Matches: 8536, Mismatches: 1539, Indels: 1464
0.74 0.13 0.13
Matches are distributed among these distances:
856 46 0.01
857 261 0.03
858 195 0.02
861 8 0.00
862 7 0.00
863 186 0.02
864 113 0.01
865 170 0.02
866 5 0.00
867 4 0.00
868 119 0.01
869 133 0.02
870 35 0.00
871 429 0.05
872 55 0.01
873 27 0.00
874 66 0.01
875 161 0.02
876 404 0.05
877 60 0.01
878 2 0.00
879 2 0.00
880 2 0.00
881 11 0.00
882 3 0.00
883 58 0.01
884 187 0.02
885 243 0.03
886 47 0.01
887 871 0.10
888 116 0.01
889 17 0.00
890 109 0.01
891 514 0.06
892 256 0.03
893 491 0.06
894 60 0.01
895 160 0.02
896 72 0.01
897 272 0.03
898 128 0.01
899 7 0.00
900 7 0.00
901 487 0.06
902 200 0.02
903 146 0.02
904 42 0.00
905 6 0.00
906 10 0.00
907 28 0.00
908 5 0.00
909 11 0.00
910 5 0.00
911 20 0.00
912 5 0.00
913 6 0.00
914 15 0.00
915 8 0.00
916 2 0.00
917 12 0.00
918 5 0.00
919 41 0.00
920 387 0.05
921 19 0.00
922 12 0.00
923 15 0.00
924 7 0.00
925 11 0.00
926 1 0.00
927 5 0.00
928 13 0.00
929 13 0.00
930 3 0.00
931 1 0.00
932 3 0.00
933 6 0.00
934 5 0.00
935 4 0.00
936 4 0.00
937 8 0.00
938 19 0.00
939 28 0.00
940 7 0.00
941 11 0.00
942 9 0.00
943 9 0.00
944 4 0.00
945 10 0.00
946 10 0.00
947 10 0.00
948 10 0.00
949 8 0.00
950 7 0.00
951 11 0.00
952 12 0.00
953 9 0.00
954 15 0.00
955 14 0.00
956 11 0.00
957 2 0.00
958 1 0.00
960 2 0.00
961 2 0.00
962 6 0.00
963 6 0.00
964 16 0.00
965 14 0.00
966 18 0.00
967 6 0.00
968 4 0.00
969 8 0.00
970 17 0.00
971 19 0.00
972 12 0.00
973 4 0.00
974 5 0.00
975 3 0.00
976 1 0.00
977 3 0.00
978 5 0.00
979 6 0.00
980 4 0.00
981 11 0.00
982 8 0.00
983 3 0.00
984 16 0.00
985 19 0.00
986 16 0.00
987 5 0.00
988 6 0.00
989 25 0.00
990 34 0.00
991 23 0.00
992 7 0.00
993 7 0.00
994 7 0.00
995 1 0.00
996 13 0.00
997 4 0.00
998 1 0.00
999 1 0.00
1000 10 0.00
1001 3 0.00
1002 5 0.00
1004 3 0.00
1005 2 0.00
1006 12 0.00
1007 8 0.00
1008 3 0.00
1009 10 0.00
1010 4 0.00
1011 7 0.00
1012 2 0.00
1013 2 0.00
1015 1 0.00
1016 2 0.00
1017 3 0.00
1018 1 0.00
1019 9 0.00
1020 7 0.00
1021 1 0.00
1022 14 0.00
1023 15 0.00
1024 126 0.01
1025 61 0.01
1026 63 0.01
1027 83 0.01
1028 49 0.01
1029 47 0.01
1030 61 0.01
1031 126 0.01
1032 156 0.02
1033 63 0.01
1034 98 0.01
1035 104 0.01
1036 102 0.01
1037 102 0.01
1038 165 0.02
1039 130 0.02
1040 86 0.01
1041 60 0.01
1042 43 0.01
1043 32 0.00
1044 35 0.00
1045 13 0.00
1046 5 0.00
1047 17 0.00
1048 16 0.00
1049 28 0.00
1050 18 0.00
1051 10 0.00
1052 15 0.00
1053 26 0.00
1054 29 0.00
1055 245 0.03
1056 155 0.02
1057 47 0.01
1058 19 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
CCCTCGGTCTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA
GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
CGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGG
GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCA
GTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
Found at i:11853072 original size:26 final size:26
Alignment explanation
Indices: 11853036--11853114 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
11853026 CCGATCCGAT
*
11853036 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11853062 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
11853088 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11853114 C
1 C
11853115 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11853974 original size:26 final size:26
Alignment explanation
Indices: 11853938--11853990 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11853928 TCGGTCTAAT
11853938 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11853964 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11853990 C
1 C
11853991 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11855727 original size:26 final size:26
Alignment explanation
Indices: 11855698--11855750 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11855688 TCGGTCTAAT
11855698 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
11855724 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11855750 C
1 C
11855751 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11856796 original size:161 final size:159
Alignment explanation
Indices: 11856578--11856956 Score: 449
Period size: 161 Copynumber: 2.4 Consensus size: 159
11856568 TGTGCTGTCG
** * * *
11856578 CAACCCTCGGTCC-GATCCGATCTTAGGCTGGGAATGAACTCCATATGCGTAAGTCAACCCACGA
1 CAACCCTCGGTCCAG-TCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* *
11856642 AACAAGCGTGCGGGTGCTCAGTCGACC-AGAAGGGCGAGATACACAAGCC-GAGGATCGACCGGG
65 AACAAGCGTGCGGGTGCTCAGCCGACCTA-AAGGGCGAGATACACAAGCCAG-GGATCGACCAGG
*
11856705 TCCCCCTCTGCGTGCTGCCGATCATGCTGACA
128 TCCCCCTCTGCGTGCTACCGATCATGCTGACA
* * * *
11856737 TAACCCTCGGTCCAGTCTATATGCTTAGACTGGGAATGAACTCTGTACGCCTAAGTCAACTCACG
1 CAACCCTCGGTCCAGTCTA-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * ** **
11856802 AAATAAGCGTGCGGGTGCTCAGCCGGCCTAAGGGGCGGGATACGTAAGCCAGGGATCGGTCAGGT
64 AAACAAGCGTGCGGGTGCTCAGCCGACCTAAAGGGCGAGATACACAAGCCAGGGATCGACCAGGT
* * *
11856867 CCCCCTCTGCGTGCTACCGATCCTGCTGCCC
129 CCCCCTCTGCGTGCTACCGATCATGCTGACA
** * *
11856898 CAACCCTCGGTCTGGTCTAATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CAACCCTCGGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
11856957 GACAAAACGA
Statistics
Matches: 184, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
159 47 0.26
160 5 0.03
161 130 0.71
162 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (159 bp):
CAACCCTCGGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACAAGCGTGCGGGTGCTCAGCCGACCTAAAGGGCGAGATACACAAGCCAGGGATCGACCAGGTCC
CCCTCTGCGTGCTACCGATCATGCTGACA
Found at i:11857017 original size:159 final size:160
Alignment explanation
Indices: 11856599--11857019 Score: 359
Period size: 161 Copynumber: 2.6 Consensus size: 160
11856589 CCGATCCGAT
* * * * * * * * ** *
11856599 CTTAGGCTGGGAATGAACTCCATATGCGTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACTCACAAAACAAGCGGGCGGGCACTCAGC
* * * * * *
11856664 CGACCAGAAG-GGCGAGATACACAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
66 CGACC-TAAGAGACGGGATACGCAAGCCG-GGATCGACCAGGTCCCCCTCTGCGTGCTACCGATC
*
11856728 ATGCTGACATAACCCTCGGTCCAGTCTATATG
129 ATGCTGACACAACCCTCGGTCCAGTCTATATG
* * * * * **
11856760 CTTAGACTGGGAATGAACTCTGTACGCCTAAGTCAACTCACGAAATAAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACTCACAAAACAAGCGGGCGGGCACTCAGC
* * * * ** *
11856825 CGGCCTAAGGGGCGGGATACGTAAGCCAGGGATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCC
66 CGACCTAAGAGACGGGATACGCAAGCC-GGGATCGACCAGGTCCCCCTCTGCGTGCTACCGATCA
* * **
11856890 TGCTGCCCCAACCCTCGGTCTGGTCTA-AT-
130 TGCTGACACAACCCTCGGTCCAGTCTATATG
* * * *
11856919 CTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CGACAAAACGAGTGGGCGGGCACT-AC
1 CTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACTC-ACAAAACAAGCGGGCGGGCACTCA-
**
11856982 GCCGACC-AGAGAGACGGGATGTGCAAGCCGTGGATCGA
64 GCCGACCTA-AGAGACGGGATACGCAAGCCG-GGATCGA
11857020 TAGGGTGGTA
Statistics
Matches: 213, Mismatches: 41, Indels: 14
0.79 0.15 0.05
Matches are distributed among these distances:
158 4 0.02
159 75 0.35
160 5 0.02
161 128 0.60
162 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (160 bp):
CTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACTCACAAAACAAGCGGGCGGGCACTCAGC
CGACCTAAGAGACGGGATACGCAAGCCGGGATCGACCAGGTCCCCCTCTGCGTGCTACCGATCAT
GCTGACACAACCCTCGGTCCAGTCTATATG
Found at i:11858575 original size:26 final size:26
Alignment explanation
Indices: 11858524--11858576 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11858514 CCGATCCAAT
* * *
11858524 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
*
11858550 CTTAGATTGGGAATCAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
11858576 C
1 C
11858577 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:11858759 original size:902 final size:902
Alignment explanation
Indices: 11856756--11860475 Score: 5250
Period size: 901 Copynumber: 4.1 Consensus size: 902
11856746 GTCCAGTCTA
** * * *
11856756 TATGCTTAGACTGGGAATGAACTCTGTACGCCTAAGTCAACTCACGAAATAAGCGTGCGGGTGCT
1 TATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCT
* * *
11856821 CAGCCGGCCTA-AGGGGCGGGATACGTAAGCCAGGGATCGGTCAGGTCCCCCTCTGCGTGCTACC
66 CAGCCGGCC-AGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCAGGTCCCCCTCTACGTGCTACC
* * *
11856885 GATCCTGCTGCCCCAACCCTCGGTCTGGTCTAATCTTCGACTGGGAATGAACTCCGTATGCCTAA
130 GATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
11856950 GCCAACCGAC-AAA--A----CGAGTGGGC--G--GGCACTACGCCGACCAGAGAGACGGGATGT
195 GCCAACCGACGAAACGAGCGGCGGGCGGGCGAGCAGGCACTACGCCGGCCAGAGAGACGGGATGC
** **
11857004 GCAAGCCGTGGATCGATAGGGTGGTAGGCAGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
260 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
11857069 GCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCA
325 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCA
* **
11857134 AGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAACTTTTTGCAGTTCAAAATTTTTTAAAAT
390 AGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTACAGTTCAGGATTTTTTAAAAT
* * *
11857198 TTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCA
454 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
11857263 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCC
519 CAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCC
* *
11857328 ATTTCAGACACTTTAATTGCTACTGGCAGCAAACGTATAAAATCTCAAATGCTCTTTAAGGGGGT
584 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
*
11857393 ATGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
649 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
11857457 CACATCATGTGCGCACA--CCCCCAGCCCCCTGATCACCGGAACCCCAATGCCG-TCGGTCAGGT
714 CACATCATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGCT-GGTTAGGT
* * *
11857519 TCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCTCGAG
778 TCTCCGGCGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAACACATGCTCGAG
* * ** * * *
11857584 CCCAGCATGTGCTGCCGTAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTTCG
843 CCCAGCATGTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCG
* * * *
11857644 TATCCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCT
1 TATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCT
* * * ** * ** * *
11857709 CAGCTGGCTAGAGGGGTGGGATGCATAAGCCAGGGATCGGTGAGGTCTACCTCTACATGCTGCCG
66 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCAGGTCCCCCTCTACGTGCTACCG
* * *
11857774 ATCCTACTGCTGTAACCCTCGGTCCGGT-TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
131 ATCCTGCTGCCGCAACCCTCGGTCCGGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
11857838 GCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATG
195 GCCAACCGACGAAACGAGC-GGCGGGCGGGCGAGCAGGCACTACGCCGGCCAGAGAGACGGGATG
11857903 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
259 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
11857968 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGC
324 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGC
* * *
11858033 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGTTTTTTTTAAAT
389 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAAT
* ** *
11858097 TTTTTTGGAAGGAGTTTTATCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
454 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
11858162 TAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTT-GAAAAAGTGTCCCC
519 CAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCC
* * *
11858226 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTGAGGGGGT
584 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
*** *
11858291 GTGAGTTCTTGCGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCG
649 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
11858356 CACATCATGTACACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACTGGTTAGGT
714 CACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCATCGGAACCCCAATGCCGCTGGTTAGGT
* * *
11858421 TCTCCAGTGATGCTCCGGCGATGGTGCCGCAGCGAAGAAAAATGCGGCACCAACACATGCTCGAG
778 TCTCCGGCGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAACACATGCTCGAG
* * *
11858486 CCCAGCATATGCTACCGCAACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTTCG
843 CCCAGCATGTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCG
* * * * **
11858546 TATGCTTAGATTGGGAATCAACTCCATATGCCTAAGTCAACCCACAAAACAAGTGTATGGGTGCT
1 TATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCT
* *** *
11858611 CAGCCGGCCAGAGGGGCGGGATGTGCAAGATGGGGATTGGTCAGGTCCCCCTCTACGTGCTACCG
66 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCAGGTCCCCCTCTACGTGCTACCG
** ** * * * * * * *
11858676 ATTTTGCTGCCATAACCCTTGGTCCGATCTGATCTTAGACTTGGAATGGACTTCGTATGCCTAAC
131 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
11858741 CCAACCGACGAAACGAGCGGGCAGGCGGGCGAGCGGGCAC-AGTGCCGGCCAGAGAGACGGGATG
196 CCAACCGACGAAACGAGC-GGCGGGCGGGCGAGCAGGCACTA-CGCCGGCCAGAGAGACGGGATG
* *
11858805 CGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAA
259 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * * *
11858870 TGCCATTTTTATGGCTTGTAAA-TCATAGAATGGTCCCCTAAGCCTTCACGTAAAGTTTCATGGC
324 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGC
* ** ** *
11858934 AAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTATTGTT-TGAGATTTTTTAAAA
389 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAG-GATTTTTTAAAA
* ***
11858998 TTTTTTCGGAAGGAGTTTTGGCCCC-AACTTGGTAGATGTGATCCTTGTATTTTTGTTCATATGC
453 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
11859062 ACAAAAAAACTCAACTAAAAACTCG-TAGTGTACAAGATTTTGTGACCATTT-AAAAAAGTGTCC
518 ACAAAAAAATTCAGCTAAAAACTCGAT-GTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCC
* * *
11859125 ACATTTTCAGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
582 CCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
* *
11859190 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCA
646 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
11859255 CCGCACATCATGTGCGTAAACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGCCGGTTAG
711 TCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGCTGGTTAG
* * * *
11859320 GTTCTCCGGCGATGCTCTGCCGATGGTGCCCCAACGAAGAAAAATGCGGCACCAACAGATGCTCG
776 GTTCTCCGGCGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAACACATGCTCG
* * ** ** * *
11859385 AGCCCAGCATGTGCTATCGAAACCCTCGGTCCGGCCCGATCTTAGACTGCAAATGAACTCCA
841 AGCCCAGCATGTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCG
* * * **
11859447 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCT
1 TATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCT
* * * * * * *
11859512 CAGCCAGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTG
66 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCAGGTCCCCCTCTACGTGCTACCG
* * * * *
11859577 ATCCTGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
131 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
11859642 CCAACCGACAAAACGAGCGGTGGGCGAGCGAACAGGCACTACGTCGGCCAGAGAGACAGGATGCG
196 CCAACCGACGAAACGAGCGGCGGGCGGGCGAGCAGGCACTACGCCGGCCAGAGAGACGGGATGCG
*
11859707 CAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
261 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
11859772 CCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAA
326 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAA
* *
11859837 GATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTT
391 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTT
* *
11859902 TTTCGGAAGGGGTTTT-GCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
456 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
11859966 AAAACATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCAT
521 AAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCAT
*
11860031 TTCAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
586 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
11860096 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
651 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
11860161 CATCATGTGCGCACACCACCCCCGACGCCCCCGATCATCGGAACCCCACTGCCGCTGGTTAGGTT
716 CATCATGTGCGCACACC-CCCCCGGC-CCCCCGATCATCGGAACCCCAATGCCGCTGGTTAGGTT
* ** * * * *
11860226 CTCTGGCGATGCTCCGATGATGGTACCCC-GACAAAGAAAAATACGGCACCAACACATGCCCGAG
779 CTCCGGCGATGCTCCGGCGATGGTGCCCCAG-CGAAGAAAAATGCGGCACCAACACATGCTCGAG
* *
11860290 CCCAGCATGTGCTACCGCAACCCTCGGTTCGATCCGATCTTAGATTGGGAATGAAC-TCTG
843 CCCAGCATGTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTC-G
* *
11860350 TATGCTTAGACTGGGAATGAAATCCATATGCCTAAGTCAACCCACGAAACGAA-CATGCGGGTGC
1 TATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAC-AAGCGTGCGGGTGC
* * * * * *
11860414 TCAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCACTACATGCT
65 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCAGGTCCCCCTCTACGTGCT
11860476 GTTCATCCTA
Statistics
Matches: 2497, Mismatches: 298, Indels: 59
0.87 0.10 0.02
Matches are distributed among these distances:
887 2 0.00
888 173 0.07
889 3 0.00
891 1 0.00
896 7 0.00
898 100 0.04
899 166 0.07
900 319 0.13
901 840 0.34
902 636 0.25
903 249 0.10
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (902 bp):
TATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCT
CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCAGGTCCCCCTCTACGTGCTACCG
ATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGCGGGCGGGCGAGCAGGCACTACGCCGGCCAGAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAA
GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTT
TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
AAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
CATCATGTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGCTGGTTAGGTTCT
CCGGCGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAACACATGCTCGAGCCC
AGCATGTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCG
Found at i:11860379 original size:26 final size:26
Alignment explanation
Indices: 11860328--11860380 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11860318 TCGATCCGAT
* * **
11860328 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCATATG
11860354 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
11860380 C
1 C
11860381 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:11861192 original size:26 final size:26
Alignment explanation
Indices: 11861156--11861208 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11861146 TTGATACGAT
*
11861156 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
11861182 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
11861208 C
1 C
11861209 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:11862584 original size:894 final size:894
Alignment explanation
Indices: 11860518--11864942 Score: 5978
Period size: 893 Copynumber: 5.0 Consensus size: 894
11860508 ACTAAGTCAG
* *
11860518 CCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
11860583 TATTTCTATGTACCAATGCCATTTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCA
66 TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCA
* * *
11860648 CATGAAGGTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATT
* * * * *
11860713 CCAAAATTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAGTAAACGTGATCCTTTTG
196 CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTG
*
11860778 TTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
261 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * * * *
11860843 TGAAAAAAATGTCCCCATTTCAGACACTATAATGCCTACTGGCAGTAAACCTATAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
11860908 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGGCAG
391 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
*
11860973 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCTAA
456 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCAGAACCCCAA
* ** * * * * *
11861038 TGCCGTCTATCAGGTTCTCCGGTGATGCTCCGACAATGGTGCCCCGGTGAAGAAAAATGC-GACA
520 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACAG-CA
* * * * **** ** * *
11861102 CCAACACATGTCCGGGA-CCAGCATGTGCTGCCGCAACCCTCGGTTTGATACGATCTTAGACTGG
584 CCAGCACATG-CCCGAACCCAGTATGTGCCAATGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * * * *
11861166 GAATGAACTCCATATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACTCACGAAATGAG
648 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAG
* * * *
11861231 CTTGCGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT-TGACTGGGTCTCCCT
713 CTTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCT
* * * * ** * **
11861295 CTGCATGCTACCGATCTTGCTACCACAAACCTTGGTTTGGTCAAATCTTAGACTGGGAATGAACT
777 CTGCGTGCTGCCGATCCTGCTGCCACAAACCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACT
* * * * *
11861360 CCGTATGCCTAAGCCAACCGACGAAATGACTAAGCGGGCGGGCGGGCGGGCACTACGTCGG
842 CCGTATGCCTAAGCCAACCGACG----G---AA-CGAGTGGGCGAGCGGGCACTACGCCGA
* *
11861421 CCAGAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
11861486 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACGATGGTCCATTAAACCTTCA
66 TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCA
* * * * *
11861551 CGTGAAGTTTAATGGCAAGACGACACGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATT
* * * * * *
11861616 TGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTG
196 CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTG
11861681 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
261 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
11861746 TGAAAAAAGTGTACCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
326 TGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
11861810 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCTA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
11861875 AGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAA
455 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCAGAACCCCAA
* * * *
11861940 TGCCACCGGTCAGGTTCTCCGGCAATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACAGCAC
520 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACAGCAC
* *
11862005 CAGCACATGCCCGAACCCAGTATGTGCCAATGTAACCCTCGGTCCGGTCCGATCTTAGATTGGGA
585 CAGCACATGCCCGAACCCAGTATGTGCCAATGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
*
11862070 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATTTGCCTAAGTCAACCCACGAAACGAGCT
650 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCT
* * *
11862135 TGCTGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCTGGGGATCGGTCGGGTCCCCCTCTG
715 TGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
* *
11862200 CGTGCTGCCGATCCTGCTGCCACAAACCTCAGTTCGTTCTGATCTTAGACTAGGAATGAACTCCG
780 CGTGCTGCCGATCCTGCTGCCACAAACCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCG
*
11862265 TATGCCTAAGCCAACTGACGGAACGAGTGGGCGAGCGGGCACTACGCCGA
845 TATGCCTAAGCCAACCGACGGAACGAGTGGGCGAGCGGGCACTACGCCGA
*
11862315 CCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
11862380 TATTTCTACGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCCTAAGCCTTCA
66 TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCA
* ** * * ** *
11862445 TGTGAAGTTTTGTGGCAAAACGACTCGTTTTCTATTTTTAATAAGTTTTGAAACTTTTTACGATT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATT
* * * * *
11862510 CGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAACCTTGGTAGACGTGATCCTTGTA
196 CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTG
* *
11862575 TTTTTGTTGGCTTGCACAAAAAAA-TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTTG-CCAT
261 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG-TGACCAT
*
11862638 TTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
11862703 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCTA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
11862768 AGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAA
455 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCAGAACCCCAA
* * * *
11862833 TGCCACCGGTCAGGTTCTCCGGCAATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACAGCAC
520 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACAGCAC
* *
11862898 CAGCACATGCCCGAACCCAGTATGTGCCAATGTAACCCTCGGTCCGGTCCGATCTTAGATTGGGA
585 CAGCACATGCCCGAACCCAGTATGTGCCAATGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
*
11862963 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATTTGCCTAAGTCAACCCACGAAACGAGCT
650 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCT
* * * *
11863028 CGCTGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCTGGGGATCGGTCGGGTCCCCCTCTG
715 TGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
* *
11863093 CGTGCTGCCGATCCTGCTGCCACAAACCTCAGTTCGTTCTGATCTTAGACTAGGAATGAACTCCG
780 CGTGCTGCCGATCCTGCTGCCACAAACCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCG
*
11863158 TATGCCTAAGCCAACTGACGGAACGAGTGGGCGAGCGGGCACTACGCCGA
845 TATGCCTAAGCCAACCGACGGAACGAGTGGGCGAGCGGGCACTACGCCGA
* *
11863208 CCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
11863273 TATTTCTATGTGCGAATGCCATTTTTATGTCTTGTAAATTCATACAATGATCCCTTAAGCCTTCA
66 TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCA
* * * * *
11863338 CGTGAAGTTTCAAGCCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATT
* * * * *
11863403 CGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAAATGTGATCCCTGTA
196 CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTG
* *
11863468 TTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
261 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * * *
11863533 TGAAAAAAGTTTCCCTATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
11863598 TGCTCTTTAAAGGGGTGTGAGTCCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
391 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
11863663 GTACCAGCACCCATCACACATCATGTGCGTACACCCCCTTCGG-GCCCCGATCGCCCGAACCCCA
456 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCC--CGGCCCCCCGATCGCCAGAACCCCA
* * * * * *
11863727 ATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCAGCGATGGTGCCCCGATGAAAAAAAATACGGCC
519 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACAGCA
* **** * *
11863792 CCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
584 CCAGCACATGCCCGAACCCAGTATGTGCCAATGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* * *
11863857 AATGAACTCCGTA-----AG-C-----CT-AACT-CA-A--CC-----C-A--CA-AAAACAAGC
649 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * * *
11863897 GTGCGGGCGTTCAGCCGGCCAGAGGGTCGGGATGCGCCAGCCAGGGATTGGTCGGGTCCCCCTCT
714 TTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
** * *
11863962 GCGTGCTGCCGATCCTG-TAGCTGCAACCCTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTC
779 GCGTGCTGCCGATCCTGCT-GCCACAAACCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTC
* * *
11864026 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGGCACTACGCCGG
843 CGTATGCCTAAGCCAACCGACGGAACGA----GTGGGCGAGCGGGCACTACGCCGA
* *
11864082 CCAGAGATACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
11864147 TATTTTTATGAGCCAATGCCATTTTTTATGGCTTGGAAATTCATACGATGGTCCCTTAAGCCTTC
66 TATTTCTATGTGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTC
* * *
11864212 ACATGAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGAT
130 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGAT
* * * *
11864277 TCCAAATTTTTTAAAATTTTTTCGAAAGGCGTTTTGGCCCCAAACTTGGTAAATGTGATCCTTGT
195 TCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGT
*
11864342 GTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
260 GTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
11864407 TTGAAAAAAATGTCCCCATTTTAGACACCTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
11864472 ATGCTCTTTAA-AGAG-GT--GTTCTCGAGGTTTGATG-GCGGATAGGGGGCCAATATAAGGGCC
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG-GGATAGGGGGCCAATATAAGGGCC
* * *
11864532 AAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCTGCCCCCCCCGATCGTCAGAACCC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-G-GCCCCCCGATCGCCAGAACCC
* * * * * * * ***
11864597 TAATGCCGCCAGTCAGGTTCTCCAGTGATGCTCCGGCAATGGTGCCCTGGTGAAGAAAAATGGGG
517 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACAG
* * * ** * *
11864662 CACCAGCACATGCTCGAGCCCAGCATGTG-CTGTCGCAACCCTCGGTCCAGTCCGGTCTTAGACT
582 CACCAGCACATGCCCGAACCCAGTATGTGCCAAT-GCAACCCTCGGTCCGGTCCGATCTTAGACT
* * * ***
11864726 CGAAATGAACTCTGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACG
646 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACG
* ** * * ** * ** **
11864791 AGCGTGCGGACGCTCAACTGGCCAGAGGGGTGGGATGCACAAGCCAAGGATCGACCGGGTCCCCC
711 AGCTTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
* * * * * * *
11864856 TCTGCATGCTGTCGATCCTGCTGCAATAACCCTC-GATCCGGTCCGATCTTAGACTGGGAATGAA
776 TCTGCGTGCTGCCGATCCTGCTGCCACAAACCTCAG-TTCGGTCTGATCTTAGACTGGGAATGAA
11864920 CTCCGTATGCCTAAGCCAACCGA
840 CTCCGTATGCCTAAGCCAACCGA
11864943 AGAAATGAGC
Statistics
Matches: 3162, Mismatches: 312, Indels: 102
0.88 0.09 0.03
Matches are distributed among these distances:
869 2 0.00
870 144 0.05
871 78 0.02
872 135 0.04
873 3 0.00
874 104 0.03
875 286 0.09
877 2 0.00
878 1 0.00
879 2 0.00
882 2 0.00
883 5 0.00
884 5 0.00
886 1 0.00
888 2 0.00
889 1 0.00
890 2 0.00
893 858 0.27
894 476 0.15
895 145 0.05
896 6 0.00
897 132 0.04
898 2 0.00
901 4 0.00
902 306 0.10
903 458 0.14
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATT
CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTG
TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCAGAACCCCAAT
GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACAGCACC
AGCACATGCCCGAACCCAGTATGTGCCAATGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCTT
GCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
GTGCTGCCGATCCTGCTGCCACAAACCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGCCAACCGACGGAACGAGTGGGCGAGCGGGCACTACGCCGA
Found at i:11864758 original size:26 final size:26
Alignment explanation
Indices: 11864718--11864770 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11864708 CCAGTCCGGT
11864718 CTTAGACTCGAAATGAACTCTGTATG
1 CTTAGACTCGAAATGAACTCTGTATG
* * *
11864744 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTCGAAATGAACTCTGTATG
11864770 C
1 C
11864771 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTCGAAATGAACTCTGTATG
Found at i:11866305 original size:26 final size:26
Alignment explanation
Indices: 11866266--11866317 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11866256 TGGTCGGATG
11866266 TTAGACTAGCAATGAACTCCGTATGC
1 TTAGACTAGCAATGAACTCCGTATGC
* *
11866292 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTAGCAATGAACTCCGTATGC
11866318 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTAGCAATGAACTCCGTATGC
Found at i:11867190 original size:26 final size:26
Alignment explanation
Indices: 11867161--11867213 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11867151 CTGGTCCGAT
* *
11867161 CTTATACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
11867187 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
11867213 C
1 C
11867214 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:11868085 original size:26 final size:26
Alignment explanation
Indices: 11868056--11868105 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11868046 CCGGTCCGAT
* *
11868056 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
11868082 CTTAGACTAGGAACGAACTCCGTA
1 CTTAGACTAGGAACGAACTCCGTA
11868106 CGCCTAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:11869000 original size:26 final size:26
Alignment explanation
Indices: 11868956--11869005 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
11868946 CTGGTCCGAT
* **
11868956 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAACAAACTCCATATG
*
11868982 CTTAGACTAGGAACAAACTTCATA
1 CTTAGACTAGGAACAAACTCCATA
11869006 CGCCTAAGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAACAAACTCCATATG
Found at i:11869874 original size:26 final size:26
Alignment explanation
Indices: 11869838--11869889 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11869828 TGGTCCAATT
* *
11869838 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGAATGGGAACGAACTCCGTATGC
11869864 TTAGAATGGGAACGAACTCCGTATGC
1 TTAGAATGGGAACGAACTCCGTATGC
11869890 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGAATGGGAACGAACTCCGTATGC
Found at i:11870766 original size:26 final size:26
Alignment explanation
Indices: 11870730--11870782 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11870720 ATGGTCCGAT
* ** *
11870730 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
11870756 CTTAGACTGGGAACAAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
11870782 C
1 C
11870783 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCGTATG
Found at i:11870922 original size:893 final size:893
Alignment explanation
Indices: 11865388--11886860 Score: 17998
Period size: 891 Copynumber: 24.0 Consensus size: 893
11865378 CCGATCTGAT
11865388 CTTAGACTGGGAATGAACTCCGTA-GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
11865452 CGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGATCGAGTTCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * *
11865517 TGCTGTTGCAACCCTCAGTCCGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * ** *
11865582 CCGACGAAACGAGC-GGGCGGGCCGGCGATCACTATGCCATCCAGAGAGACGGGATGCGCAAGCT
196 CCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * * *
11865646 ATGGATCGATAGGGTGGTAGATCGATTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
11865711 TTAAT-GCTTTGTAGATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
326 TT-ATGGC-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
11865775 ACTCGTTTTCTATTTTTCATGATTTTTGAAA-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * *
11865839 GAAAGGATTTTTGGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
11865904 AATTCAGATAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
11865969 GACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTAAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
11866034 TCTCAAGGTTTGATGAGGGATAGGAGGCCAAAATAAGGGCCAAGTACCAGCACTCATTGCACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
11866099 ATGTGCGCACACCCCCCCGCCCGGCCACCCCGATCACCAGAACCCCAATGCCGTCGGTCAGGTTC
714 ATGTGCGCACA---------CC--CC-CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
** * * * *
11866164 TCCGGTGATGCTCCGATGATGGT-GCCTCGATGAAGAAAAATGCGTCACCAACACATGCCCGAGC
767 TCCGACGATGCTCCGACGATGGTGGCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
11866228 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCGGATGTTAGACTAGCAATGAACTCCGTATG
831 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
11866291 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
11866356 CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTATGTGCTACCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
*
11866421 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
11866486 CCGACGAAACGA-----GCGGGTGGGAGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCT
196 CCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * **
11866546 GTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTGAAATTTCTGCATGCCAATGTTATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
11866611 TTATGGCTTGTAAATTCATACAATCGTCTCTTAAGCCTTCACGTGAAGTTTGATGGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
11866676 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATATTTTTTT
391 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAA-ATTTTTTC
* * * * *
11866741 GGAAGGA-TTCTTGGCCCCAAACTTGGTAGCCATGATCCTTGTATTTTTTTTGGCATACAAAAAA
454 GGAAGGAGTT-TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
** * *
11866805 AAATTTGGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTT-
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
11866869 AGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 A-GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
11866934 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCAACGCATA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
11866999 TCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATG-CG-CGGTCAGGTTCTC
712 TCATGTGCGCACA-----CC--CCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * *
11867062 CGGTGATGCTCC-AGCGATGGTGGCCCAACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCC
769 CGACGATGCTCCGA-CGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
11867126 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTATACTAGGAATGAACTCCGTATG
833 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
11867187 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *** * * * *
11867252 CGGCCAGAGGGGCTGGATGCGCAAGCCGAGGATCAACCGGGTCCCCCTCTACGTGCCGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * **
11867317 TGCTGGCACAA-CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTGTGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
11867381 CCGATGAAACGA-----GCGGGCGAGCGGGCACTACATCGGCTAGAGAGACGGGATGCGCAAGCC
196 CCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* *** *
11867441 GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATAT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
11867506 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** * * * * *
11867571 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGTTTCGGGACTTTTAAAAATTTTCTCAG
391 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* **
11867636 AAGGATTTTTGGGGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
11867701 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* **
11867766 CACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGCAATGTGAGTT
586 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GGTGTGAGTT
* * * **
11867831 CTCGAGATTTGATGAGAGATA-GGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCATACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
11867895 TGTGCGCACACCCCCCCGGCCCGCCCGATCCCCAGAACCCCAATACAGCCGGTCAGGTTCTCCGA
715 TGTGCGCACA-----CC--CCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * * *
11867960 CGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCA
772 CGATGCTCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
11868025 TGTGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
837 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * * * *
11868082 CTTAGACTAGGAACGAACTCCGTACGCCTAAGTTAACCCATGGAATGAGCATGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
11868147 CGGCCAGAGGGGCGAGATGCGTAAGCTGGGGATCGGTTGGGTCCCCTTCTGCGTGCCGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
11868212 TGTTGCCACAACCCTCAGTCAGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
11868277 TCGATGAGACGAGC-GGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
196 CCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * * *
11868341 GTGGATCCATAGGGTAGTAGGTGGGTTTAGGTACATCTTTATATTTCTGCTTGCCAATGTCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
11868406 TTATGGCTTGTAACTTCATACAACGGTCCCTTATGCCTTCACGTGAAGTTTCATGGGAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
11868471 TCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAAATTTTTT-G
391 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCG
* * * *
11868535 GAAGGATTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
11868600 ATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
11868665 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAAGGTGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * * * * *
11868730 CTCGAGATTTGGTGAGAGATAGGGGGCCATTAGAAGGGCCAAGTTCCAACACCCATCACACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
11868795 TGTGCGCACACCCACCCGGCCCGCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
715 TGTGCG--CA--CA-CC--CCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * * * *
11868860 TGATGCTCCGGCGATGGT-GCCCCAGTGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGC
772 CGATGCTCCGACGATGGTGGCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * ** *
11868924 ATGTGCTGCCGTAACTCTCAATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
836 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * * * * * * *
11868982 CTTAGACTAGGAACAAACTTCATACGCCTAAGTCAACCCACGGAACGAGCATGTGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
11869047 CGGCCAGAGGGGCGGGATGCGCAAGTCAGGGATCGGTCGGGTCCCCCTCTGCGTGCCGCCGATAC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
11869112 TGCTACCACAATCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
11869177 CCGAC-AAA--A------TGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
196 CCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * * *
11869233 CTGGATCCATAGGGTAGTAGGTGGGTTTAGACACATCTTCATATTTATGCATGCCAATGTCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
11869298 TTATGGCTTGTAACTTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
11869363 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
391 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
11869428 AGGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
11869493 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
11869558 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAA-GGGGTGTGAGTTC
586 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
11869622 TGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCAT
651 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
11869687 GTGTGCATA--CCCCCCGATCGCCGGAACCCCAATGCCGCCGTTCAGGTTCTCCGACGATGCTCC
716 GTGCGCACACCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * *
11869750 GACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAACACATTCCCGAGCCCAGCATGTGCTACC
781 GACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* *
11869815 GCAACCCTCGGTCTGGTCCAATTTTAGACTGGGAATGAACTCCGTATG
846 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
11869863 CTTAGAATGGGAACGAACTCCGTATGCGTAAGTCAACCCACGGAACGAGCATGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
11869928 CGGCCAGA-GGGCGGGATACGGAAGTCGGGGATCGGTCAGGTCCCCCTCTGCGTGCCGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
11869992 TGCTGCTGCAACCC-CTGGTCTGGT-TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
131 TGCTGCCGCAACCCTC-GGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
11870055 AATCGATGAAACAAGCGGGTGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGC--G-GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
** * *
11870120 AAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTTTGCATGCCAATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * * *
11870185 CATTTTTATGGCTTGTAAATTCATAAAATGGT-CCTTAAGCTTTCAGGTGAAGTTTCATAGCAGG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*** ** *
11870249 ACGACTCGTTTTCTATTTTTCACGATTTCCAAAACTTTTTATGGTTGGGGATTTTTTAAAATTTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * * * *
11870314 TTCGAAAGAAGTTTTGGTCCCAAACTTTGTAGACGTGATCCTTGTATTTTTATTGGCAAGCCCAA
451 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
11870379 AAAATTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
11870444 TCAGTCAATTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
** *
11870509 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTTCCAAGTACCAGCACCCATCGAAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * * *
11870574 ATCATGTGCGCATA-CCCCCTTGATCACCGGAACCCCAATGCCGCCGTTTAGGTTTTCCGACGAT
711 ATCATGTGCGCACACCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * *
11870638 GCTCCGACGATGGTGGCCCGACGAAGAAAAATGCAGCACCAACACATTCCCGAGCCCAGCATGTG
776 GCTCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
11870703 CTACCGCAACCCTCGGTATGGTCCGATCTTAGATTGGGAATGAACTCTGTATG
841 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * * *
11870756 CTTAGACTGGGAACAAACTCCGTATGCCTATGTCAACCCACGAAACGAGCATGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** *
11870821 CGACCAGA-GGGCAAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCCGTTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
11870885 TGCTGCCACAACCCCCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
11870950 TCGATGAAATGAGCGGGCGGGCGGGCGGGCGGAGGCACTACGTCGGCCAGAGAGACGGGATGCAC
196 CCGACGAAACGAGC--G-GGGCGGGCGGGC-G-GGCACTACGTCGGCCAGAGAGACGGGATGCGC
* *
11871015 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
11871080 CATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** ** *
11871145 ACGACTCGTTTTCTATTTTCCATAATTTTCAAAACTTTTTGTGGTT-GGTGATTTTTTAAAATTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG-GATTTTTTAAAATTT
* * * * *
11871209 TTTCGGAAGGAGTTTTGGCCCCACATTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCCCA
450 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
11871274 AAAAATTTCAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCAT
515 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
11871338 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
580 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
11871403 GAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCATCGCA
645 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
11871468 CA-C-----CCCCCAGCTCCCCCGATC-CTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACG
710 CATCATGTGCGCACACCCCCCCCGATCGC-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * * * * *
11871526 ATGTTCCGACGATGGTGCCCCGACGAAGAAAAGTGAGGCGCCAGCACATGCCCTAGCCCAGCATG
774 ATGCTCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * *
11871591 TGCTGTCGTAACCCTTGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATG
839 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
11871646 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
11871711 CGGCCAGACGGGCGCGATGCGTAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGTTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
11871776 TGGTACCACAACCCTTGGTCTGG-CTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
11871840 ACCCACGAAACGA-----GAGGGCGAGCAGGCATTATGCCGGCCAAAGAGACGGGATGCGCAAGC
195 ACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * *
11871900 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCCTCATATTTCTGCTTGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
11871965 TTTATGGCTTGTAAATTCATACAACGGTCCTTTAAGCCTTCACATGAACTTTCATGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
11872030 CTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTTCGGTTCGGGATTTTTT-AAATTTTTTCA
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* *
11872094 GAAGGAGTTTTGG-CCCAAACTTGGTAGACATGATCCTTGTATTTCTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
11872158 ATTCGGCTAGAAACTCGAAGTCTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * * * *
11872223 ACACTTTAATGGCTACTGGTAGCAAACCTATAAAATATGAAATGCTCCTTAAGGGGCTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
11872288 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCT
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC-
* ** * * * * * *
11872353 TATGTGCGCACCCCCCGGCCCCCCCGATCATCGAAATCCCAATGTCGTCGGTTAGGTTCTCTGAC
714 -ATGTGCGCA---CAC--CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * * *
11872418 GATGCTCCGATGATGGT-GCCCTAATGAAGAAAAATACGGCAACAGCACATGCCCGAGCCCAGCA
773 GATGCTCCGACGATGGTGGCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
11872482 TGTGCTGCCGCAACCCTCGGTCCT-ATCCGATCTTAGACTGGGAATGAACTCCGTATG
837 TGTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
11872539 CTTAGACTGGGAATGAACTCCGTAT-CTTTAAGTCAACCAACGAAACGAGCGTGCGGGTGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGC-CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * **
11872603 CCGGCCAAAGTGGTGGGATGCACAAGCCGGGGATCGGTCAGGTCCCCTTTTACGTGCTGTTGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
11872668 CTGCTACTGCAACCCTTGGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGGC
130 CTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
*** * * * *
11872732 AA-C-A--AAA--A---AAACGAGCGGGCGGGCATTACGCCGGCCAAAGAGACGGGATGCGCAAG
194 AACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * * * * *
11872788 TCGTGGATCAATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAAGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * * * *
11872853 TTTTATGGCCTGTAAATCCATACAATGGTCCTTTAAGCGTTCACGTGAAGTTTAATGGCAAGACA
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
11872918 ACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTT
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
** *
11872983 GGAAGGAGTTTTCACCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
11873048 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCTCATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
11873113 GACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
11873178 TCTTGAGGTTTGATGAGGGATAGGGCGCCAATATAAGGGCCAAGTTCCAAG-ACCCATCGCACAT
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC-AGCACCCATCGCACAT
* * *
11873242 CATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCTGGTTAGGTTCTCC
713 CATGTGCGCACA-----CC--CCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * ** * *
11873307 AACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAATTGCGGCACCAGCACATGCTCGAGCCCAG
770 GACGATGCTCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
*** * * * *
11873372 CATGTGCTGCTATAACCCTCGGTCTGATCTGATCCTAGACTAGGAATGAACTCCGTATG
835 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
11873431 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAAACCATGAAACGAGCATGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
11873496 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCC-CT---T--TG-CG----
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * * *
11873549 TACTGCCGCAACCCTTGATCCAGTCTGATGTCAGACTGGG-ATGAACTCCGTAAGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
11873613 CCGACGAAATGAGC-GGACGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGTC
196 CCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
11873677 GTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCGTGCCAATGACATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
11873742 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACAAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * *
11873807 TCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGTATTTTTTAAAATTTTTTTGA
391 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* **
11873872 AAGGAGTTTTAGCCCCAAACTTACTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
11873936 TTTCTA-CTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAAGTGTCCCTATTTC
521 -TTC-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTC
*
11874000 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
11874065 GTCTCAAGGTTTGATGTGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
11874129 CATGTGCGCGCACCGCCCCTGACCCTCCCGTTCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTT
713 CATGT--GCGCA---CACC---CCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
11874194 CGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTA
769 CGACGATGCTCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * * * *
11874259 GCATCTGCTGTCGCAACCCTCGATCCGATCTGATCTTATACTGGGAATGAACTTCGTATG
834 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * ** *
11874319 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACGCACGAAACAAGCATGCGGGCATTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
11874384 CAGCCAAAGGGGCGGGATGCACAAGCCAGCGATCGGCCAGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
11874449 TGTTGCTGCAACCCTTGGTCTGGTCCGATCTTAGACAGGGAATGAATTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** *
11874514 CCGACGAAACGAGCGGGCGGACGAGCGGGCGGGCACTACGTCGGTTAGAGAGACGGGATGCACAA
196 CCGACGAAACGAGC-GG-GG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* **
11874579 GCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGGTGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
11874644 TTTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 -TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
11874709 CAACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTGCGGTTCGGGATTTTTT-AAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
*
11874773 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATGTTTT-TTGGCATGCACAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAA
*
11874837 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATCTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
11874902 TTAGACACTTTGATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
11874967 AGTTCTGGAGGTTTGATGAGCGATAGGTGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * ** *
11875032 ATCATATGCACACACCCCCCGGGCCCCCCGATTGTGGGAACCCCAATGCCGCCGATCAGGTTCTC
711 ATCATGTGCGCACA----CC---CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
11875097 CGACGATGTTCTGACGATGGT-GCCCGGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCC
769 CGACGATGCTCCGACGATGGTGGCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
*
11875161 AGCATGTGCTGCCG-AAACC-C--TC--G---G----T---C------TG-A-TCCG-AT-
833 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
11875196 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACTCAGGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** ** * *
11875261 CGGCCAGAGGGGCAGGATGCGCAA-------ATCGACCAAGTCCCCCTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
11875319 TGCGGCTGTAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
11875384 CCGACGAAACGAGCGGGGCGACGGGCGGGCGGGCACTACG-CTGGCCAGAGAGACGGGATGCGCA
196 CCGACGAAACGAGC-GGG-G-CGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCA
* * * ** *
11875448 AGCCGTGGATCGATTGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTTTGTGTGTCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
11875513 A-TTTTGTGCCTTGTAAATTCATACAATGGTCCCTTATGCCTTCAC-TCTAAGTTTCATGGCAAG
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT-GAAGTTTCATGGCAAG
* * * ** * * *
11875576 ACGAGTCGTTTTCTATTTTTTAGGATTTTCAAAAATTTTTTCGGTTCGAGATTTTTTAAAATTTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * *
11875641 TTTGGAAGGAGTTTTGGCACCAAACTTGTTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
451 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
11875706 AAAAATTCAGCTAAAAACTCAAAGCGTACAAGATTTTGTGACCATATGAAAAAAGTGTTCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
11875771 TCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTGTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
11875836 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
11875901 ATCATGTGCACTCACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCTGTCGGTCAGGTTCTC
711 ATCATGTG--CGCA---CAC--CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** * **
11875966 CGACGATGCTCCGGCGATGGTACCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCGTA
769 CGACGATGCTCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * **
11876031 GCATGTACTGCTGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
834 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
11876091 CTTAGACTGGGAATCAGCTCCATATGCCTAAGTGAACCCACGAAAAGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * * * * *
11876156 CGACCAGAGGGGCGAGATGCGTAAATCGAGGATCGATCGGGTCCCCTTCTACGTGTTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
11876221 TACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGACTGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
11876286 CAGACGAAACGAACAAGGGGGCGGGCGGGCGGGAACTACGCCGGCGACAGAGACGGGATGCACAA
196 CCGACGAAACGAGC---GGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * * ***
11876351 GTCGTGGATCGATAGGGTGGTAGGCGGGTTTACGCACATCTTCATGTTTCTATGTGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
11876416 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
11876481 AACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGCCGTT-GGAGATTTTTTAAAATTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG-GATTTTTTAAAATTTTT
* *
11876545 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTTGGCATGCACAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAA
* ** **
11876610 AAAAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTTCGCT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
11876675 TCAAAAATTTTAATTGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
11876739 AGTTCTCGATGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGTAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
11876804 ATCATGTGCGCATACCCCCCGGCCCCCCGATCACCGGAACCCTAACGCCGTCGGTCAGGTTCT--
711 ATCATGTGCGC--A--CACC--CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
11876867 --C--TG----G-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAA
770 GACGATGCTCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
*
11876923 CATGTGCTGCCGCAACCCTCGGTCCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATG
835 CATGTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
11876982 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
11877047 CGGCCAGATGGGCTGGATGCGCAAGCCGGGGATCGATCGGGTCCCCATCCGCATGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * * * ** *
11877112 TGCCACCGTAACCCTCGATCTGATCCGATCTTAGTTTGGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
11877177 CCGACGAAACGA-----GCGGGCAGGCAGGCACTACGTCGGCCTGAGAGACGGGATGCGCAAGCC
196 CCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
*** * **
11877237 GTGGATCGATAACATGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
** * *
11877302 TTATCACTTGTAAATTCATACAATGGTCCCTTAAGTCTTCATGTGAAGTTTCATGGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** *
11877367 TCGTTTTCTATTTTTCATGATTTATGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTTGG
391 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
*
11877432 AAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
11877497 TTCAGCTAAAAACTCAAAATGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAGA
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
11877562 CACTTTAATGGCTATTGGCAGCAAAGCTGTAAAATCTCAAATACT-TTTAAAGGGGGTGTGAGTT
586 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTT
*
11877626 CTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * **
11877690 TGTACACACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGTCGTCGATCAGGTTCTCCGGT
715 TGTGCGCACA-----C--CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
11877755 GATGCT-C--C---GGT--------GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
773 GATGCTCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
11877806 GTGCTGCCAG-AACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
838 GTGCTGCC-GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** *
11877862 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATTAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
11877927 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATC-GACTGGGTGCCCCTCTACGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
11877991 CTACTGCCGTAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
11878056 ACCCACGAAACGAGCGGCCGGGCGGACGGGCGGGCATTACGCCGGCCAGAGATACGGGATGCTCA
195 ACCGACGAAACGAGC-G--GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
*
11878121 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCACGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
11878186 ATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAATTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
11878251 CGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTGCGGTTC-AGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * *
11878314 TCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
11878379 AAAATTGAACTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
11878444 CAGACACTTTAATGGCTACGGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
11878509 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
11878574 TCATGTGCGCACACCCCCTGGCTCCTTCGATCGCCGGAACCTCAATG-CGCTGGTCAGGTTCTTC
712 TCATGTGCGCACA-CCCC---C-CC--CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * *
11878638 GACGATGCTCCGGTGATGGT--CCCCAGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
770 GACGATGCTCCGACGATGGTGGCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * * ** *
11878701 GCATGTGCTGCCACAACCCTTGGTAC-GATCTGATTTTAGATTGAAAATGAACTTCGTATG
834 GCATGTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
11878761 CTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
11878826 CAGCCTGAGGGGCGGGATGTGCAAGCCGGGGATTCGGTCGGGT-CCCC-AT-C---CT----A--
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * *
11878879 CTG-T--CGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG-CTTAGAC-
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*** * * ** * * ** * * **
11878939 TGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGC-CTAAGTCAACCCATGA-A
195 ACCG-ACGAA--ACG-A-GC-GGGGC-GGG--CG---GGCG--GGCACTACGTC-GGCCA-GAGA
* * * * * * * **
11879002 -AC--GA-GCGTACAGGCAC-T-CAGTCGACCA--GAGG--GGCGGG---ATGCACAAGC--CGG
244 GACGGGATGCG--CAAGC-CGTGGA-TCGA-TAGGGTGGTAGGTGGGTTTAGGCAC-ATCTTCAT
*** ** *** * * * ** * **
11879052 GGATC--CA--CC-GGGTCCCCCTCTGTGTGCTGTCTATCTTGCTACCACAACCCTCGGTCCGGT
303 ATTTCTGCATGCCAATG-CCATTTTTATG-GCT-TGTAAATT-C-A-TACAA---T-GGTCCCTT
* * * * * * * *** * *****
11879112 CAGATCTT-AGGCCGGGAATGAACTTCGTATGCCTAAGCCAAC-CGATGAAACGAGCGGGCGAGC
358 AAG-CCTTCA---CGTGAA-G--TTTC--ATGGC-AAGACGACTCG-T-TTTCTATTTTTC-A-C
***** *** ** ** * *** * * * ** **
11879175 GGGTAGGCGGGCGGGCACTACGCCGG-CCAGAGAGACAGGATGTACAA-GTCGT-GGATCGA---
409 --G-ATTTTTG-AAACTTTTTG-CGGTTC-G-G-G--ATTTTTTAAAATTTTTTCGGAAGGAGTT
* ***** ** * * ** * * * **** *
11879234 TAGGGTGGTAGGTGGGTTTAGGC-ACAT-CTTCTTATTTTTGCATGCCAATGC-CATTTTAATGG
464 TTGGCCCCAAACTTGG--TAGACGTGATCCTT-GTATTTTTG-TTGGC-ATGCACAAAAAAAT-T
* ** * * * ** *** * **
11879296 CTTG-TAAATTCATAGAA-TGGTCCCGTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGT
523 C-AGCTAAAAAC-TCGAAGT-GT-AC--AAG-ATT-TTGTGACCATT--T-G-AA-A-AAAGTG-
** * ** * ** * * *** * * *
11879359 TTTCTATTTTTCATGA-TTTTTGAA--ACTTTTTGCGGTTCCAGATTTTTTAAAATTTTTTTGAA
573 TCCCCA--TTTCA-GACACTTT-AATGGCTACTGGCAG---CA-AACCTGTAAAA----TCTCAA
* * * * ** * * ** * * ***
11879421 AGGTTTTTTGGCCCCAAACTTGGTATACGTGA-TCCTTGTATTTTTGTTG-GTGTGCAAAAAATA
626 ATGCTCTTT-------AA--GGGGGT--GTGAGTTCTCG-AGGTTTGATGAG-G-G---ATAGGG
*** * * *** * * ** * * * *** * ****
11879484 ATTCAGCTAAAATCTCGAAGTGTACAAG-A--TTTTGTGAC--CATTTGAAAAAAGTGTCCCC-A
674 GGCCA-ATATAAGGGCCAA--GTACCAGCACCCATCG-CACATCATGTGCGCACACCCCCCCCGA
**** *** * * * * **
11879543 T-TTTAGACACTTTAATGGCTACTGGCAG-CAAACCTGTAAAATCT-C-A-AATGCTCTTTAACG
735 TCGCCGGA-ACCCCAAT-GC--C-GCCGGTC--A--GGT----TCTCCGACGATGCTC--CGACG
** * * * * * ** ** * * * * *
11879603 GGGTGTGAGTTCTCGAGGTTTGATGAGAGATAG-GGGGCCAATATAAGGGCCAAGTACCAGCA--
785 ATG-GTG-G--CCCGA----CGAAGAAAAAT-GCGGCACCAGCA-CATGCCCGAG-CCCAGCATG
** ** * **** ** *** *** *
11879665 CCCAT--CGCACATCATGTGCGGACAACCCCCCCGCCCCCCCGA-T-GGCCGGAAC-CACAATAT
839 TGC-TGCCGCA-A-C-CCT-CGG---TCTGGTCCG-ATCTTAGACTGGGAATGAACTC-C-GTAT
11879725 -
893 G
* ** * ** * * * * *** * *
11879725 C---GTC-GGTCAGGTTCTCCGGCGATG-GT--GGC--CCGACG-AA-GAAAAATG-TGGCAC-C
1 CTTAGACTGGGAATGAACTCC-G-TATGCCTAAGTCAACCCACGAAACG-AGCGTGCGGGCGCTC
* * ** * * * * * * ** ** * **
11879777 AGCACATGCCTGA-GCCCAGCATGTGC-TGTC--GGAACCCTC-GG-CCCGGTCTG-AT-CT-TA
63 AGC-C-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
***** * ** * * *
11879833 GA--CTGGAAATG-AA--CTC---C--GTATG--CTTATTCTAGGAATGAACTTCGTATGCCTAG
126 GATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ** * * *
11879886 GTCAACCCATGAAACGA-----GCTTGCGGGC--G-A-T-CAGCCGGCCAGAGGGGCGGGATGCG
191 GCCAACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTAC-GTCGGCCAGAGAGACGGGATGCG
* * ** * * *
11879941 CAAGCCGGGGATCGGTCA-GGTCCCCCTCTACGTGCTGTCGATCTT-GCTGCTGTAACCCTCGGT
255 CAAGCCGTGGATCGAT-AGGGT-----GGTA-G-G-TG--GGT-TTAG--GC----A-CATC-TT
* * * * * * * * * * * * * **
11880004 CCTGTCCAATCTTAG-ATTG-GAATG-AACTCTGTATGCCTAAGCCCAACTGATGAAACGAGCGG
300 CATAT---TTC-T-GCA-TGCCAATGCCA-TTTTTATGGCT-TG--TAAAT--TCATAC-AATGG
* *** * ** **** * * * **
11880066 GCGGGTAGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGG
352 TCCCTTAAGC-CT---TCA-CGTGA-AG-TTTCATG-GCAAGACG-A-CTCG-T---TTTCTA--
* * * * * ** ** * **
11880131 TGGGTTTAGTCAC-A-TCTTCATA-TTTCTGCATGCTAAAGCCATTTTTATGGCTTGTAAATTCA
401 T---TTT--TCACGATTTTTGAAACTTTTTGC--GGT-TCGGGA--TTT-T---TT-AAAATTTT
* * ** * * * * * * *
11880193 TAC--AATG-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC--GACTCGTTTTCTATTT
451 TTCGGAAGGAGT---TTTGGCC--C-C---AA---ACTTGG-TAGACGTGA-TCCTTGTATTTTT
** *** *** * * ***** ** * * *
11880253 -TTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-
502 GTTGGC-ATGCACAAAA-AAATT-CAG--C--TAAAAACTCGAA-GTGTAC--AA-GA-TTTTGT
* * ** * * * ** ** * **
11880316 GCCCCAAACTTGGTAGACGTGAT--CC-TTT--TA-TTTTTTTTGGCT--TGCACAAAAAACTTC
555 G-ACC--ATTTGAAAAAAGTG-TCCCCATTTCAGACACTTTAATGGCTACTG-GCAGCAAAC--C
* * * * * ** **** * * * **
11880373 AGCAAAAAACTCGAA-G-TGTACAAGATTTTGTGA---C-C-A--TTTGA--A--AAAAGTGTCC
613 TG-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * ** * * * * * *** * ***
11880425 CCATTTCA--GACACTTTAACGGCTA--C-TGGCAGCA-AACT-T--GTA-AAATCTCAAAAT-G
677 CAATATAAGGGCCA-AGTACCAGC-ACCCATCGCA-CATCA-TGTGCGCACACCCCCCCCGATCG
** ***** * * ** * ** ** *
11880479 CTCTTTAAGGGGTATG-AGTTC--TCAAGGTT-TGATGAGGGATAGGGGGCC-AATATAAG-GGC
738 C-C-GGAACCCCAATGCCG-CCGGTC-AGGTTCT-CCGA-CGAT---GCTCCGACGAT-GGTGGC
* ** *** ** * ** * *
11880538 CAAGTTTG-AGCACCCAT-C-GCACATCATGTGCGCACACCCCCCGACCCCCCCGATCG-CCGGA
793 C-CG-ACGAAG-AAAAATGCGGCAC--CA-----GCACA-TGCCCGAGCCCAGC-AT-GTGCTG-
* ** *
11880599 CCCCAATCCCGTCGGT-TAGGTTCTATGGCGATGGTTCTCCGAC-GAAGAAAAATGCAGCAC-CA
844 CCGCAA-CCC-TCGGTCT-GG-TC-----CGA----TCTTAGACTG--G--GAATG-A--ACTC-
**
11880661 ACACATG
888 -CGTATG
** *** * ** * ** ** *** **
11880668 C-CCGAGCCCAGCATGTTCTGCCGCAACCCTCGGTCCGGTCCAATATTAGACTAGGAATGAAC-T
1 CTTAGA-CTGGGAATGAACT-CCGTATGCCTAAGT-CAACCCACGA--A-AC---G-A-G--CGT
* *** * * * *** * * * * ** *
11880731 CCGTATGCTTAGACTAGG-AATGA-ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGG
53 GCGGGCGCTCAG-C-CGGCCA-GAGGGGCGGGATG-C---G-CAAGCC-GGGGAT-CG-GT-CGG
* * * * * * * * * *
11880794 GTGCTCAGCCGGC-CAGAGGGGTG-GGAT-GTGCAAGCCGGGATCAGCC-GGGTCCCCCTTTGCG
106 GT-C-C--CC--CTCTGCGTGCTGCCGATCCTGC-TGCC-GCA--ACCCTCGGT----C--TG-G
* * ** * *
11880855 TGCTGCAGATCCTGCTGCCACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCAGCA
154 T-CT---GAT-CT--T---A-GA--CT--G---GG---AA--TGA-ACTCCGTATG-CCT-A--A
* * * * * * * * *
11880920 TCCCTAAGCCAACCGATTA--AAC-GAGCGTGCGGGCGGGCAGGCGGGCACTACGCCTGCCATAG
191 -GCC-AA-CCGA-CGA-AACGAGCGGGGCG-G-GCG------GGCGGGCACTACGTCGGCCAGAG
*
11880982 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT
243 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*
11881047 TGCATGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
308 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *** *
11881112 GTTTCATGGCAAGCCGACTCGTTTTTTATTTTTCACGATTTCCAAAACTTTTTGCAGTTCGGGAT
373 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGAT
* * *
11881177 TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTTTATTTTTG
438 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
11881242 TTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
503 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
11881307 AAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCT
568 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
11881372 TTAAGGGGGTGTGAGCTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
633 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
11881437 GCACCCATGGCACATCATGTGCGCACACCCCCTCGGCCCCTCGATCACCGGAACCCCAATACCGT
698 GCACCCATCGCACATCATGTGCGCACA---CC-C--CCCC-CGATCGCCGGAACCCCAATGCCGC
* ** *
11881502 CGGTCAGGTTCTCCGACGATGCTCCAACGATGGT-GCCCTGGTGAAGAAAAATGTGGCACCAGCA
756 CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGGCCC-GACGAAGAAAAATGCGGCACCAGCA
* * * * * *
11881566 CATGCCCAAGCCTAGCATGTGATACCGCAACCCTGGGACTGGTCC-ATCTTAGACTGGGAATGAA
820 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
*
11881630 CTCTGTATG
885 CTCCGTATG
* *
11881639 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ***
11881704 CGGCCAGAGGGGCGGAATGCGTAAGCCGAGGATC-GACTGGGTCCCCCTCCATGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
11881768 CTGCTACCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
11881833 ACCGACGAAACAAGC---GC--GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
195 ACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* ***
11881893 CGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
11881958 TTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGCCGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *** * * *
11882023 CTCGTTTTTTATTTTTCACAATTTCCAAAACGTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTG
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* *
11882088 GAAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
11882153 ATTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCC--TTCTA
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-A
11882215 GACAC-TTAATGGCTACTGGCAG-AAACCTGTAAAATCT--AATGCTCTTTAAGGGGGT-TGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
11882275 T-T--AGGTTTGATGAGGGATA-GGGG-CAATATAA-GG-CAAGTACCAGCA-CCA-CAGCACAT
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACAT
* * * * *
11882331 CATGTGCAGCACA-ACCCCTC-AT--CC-G-A-CCCAATG-C-TCGTTCAGGTTCTCCGATGATG
713 CATGTGC-GCACACCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * * * *
11882387 CTCCAACGATGGT-GCCTG-TGAAG------GCGGCACC-G-A-AT----G-GCCTAGCA--TGA
777 CTCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
11882434 TG--G-AAGCCCTCGGTC--GTCCG-TCTTA-AATGGGAATGAACTCTGTATG
842 TGCCGCAA-CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
11882480 CTTAGACTGGGAA--AA--CC-TAAGCCTAAGGCAA-CCAC---AC-AGCGT-TGTGCGC-CAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
11882533 TC--CTAGA------GGAAG-GCATGCC---GAT-GG--GGG--------T-C-T--TG-C-ATC
66 -CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * *
11882569 CT--T-CC-CACACCCTC-GTC-AG-C--ATCCTAGACTAGGAATGAACTCCGTATGCCTAAGCC
130 CTGCTGCCGCA-ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * * *
11882625 AACCGACGAAACGA-----GCGAACGGGCGAGTAGTACGCCGGCCAGAGAGACGGGATGCGCAAG
194 AACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* *
11882685 TCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
11882750 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACC
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * * *
11882815 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTTGGGATCTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* *
11882880 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATCTTTGTTGGCATGCACAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
11882945 ACTTCAGCTAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
11883010 GACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTC-AATGCTCTTTAAGGGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
11883074 TC-CGAGGATTGGAT-AGGGCTAGGGGGCCAATCAT-AGAGCTAAGTACCAGCACCCATCGCACA
649 TCTCGAGG-TTTGATGAGGGATAGGGGGCCAAT-ATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** * *
11883136 TCATGTGTGCACACACCCCTGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTTTT
712 TCA--TGTGCGCACA---C---CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG-TTCT
* * * * * ** *
11883201 CCGGCAATGCTCCGACGATGGAGCCCCGATGAAGAAAAATGCATCACCAGCACATGCCCAAGCCC
768 CCGACGATGCTCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
11883266 AGCATGTGCTGCCACGACCCTCAGATC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
833 AGCATGTGCTGCCGCAACCCTC-GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
11883327 CTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** ** * * ** * * **
11883392 CTACCAGAGGGGCATGATGCGCAGGTCGGGGATCGACCGGGTCCGCCTCTGCATGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *** *
11883457 TACTACCGCAACGCTCAGTCCAATC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * *
11883521 CCAACGAATCGAGC-GGGCGGTTCGGCGGGCGGGCACTACGCCTACCAGAGAGATGGGTTGCGCA
196 CCGACGAAACGAGCGGGGC-G---GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
11883585 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
11883650 ATTTTTTTGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** * *
11883715 TGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * * *
11883780 TCAGAAGGATTTTTGGCCCCAAACTTGGTAGTCTTGATCCTTGTACTTTTT-TTGGCATGCACAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAA
* * *
11883844 AAAAATTCAGCGAAAAGCTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
11883909 TCAGACATTTTAATGGCTACTAGCAGCAAACCTCTAAAATCTCAAATGCTTTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
11883974 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGGAGCCGTCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
11884039 ATCATGTGCGCACACCCCCTGGCCCCCTCGATCGTCGGAACCTCAATGTCGTCGGTCAGGTTCTC
711 ATCATGTGCGCACA---CC---CCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * ** *
11884104 CGGCGATGCTCCGGTC-ATGGCGCCCCGTGCGAAGAAAAATGCGGCACCAGCAGTTGACCGAGCC
769 CGACGATGCTCC-GACGATGGTGGCCCG-ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
11884168 CAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
832 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
11884230 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
11884295 CGGCCAGAGGGGCGGGATGCGCAAGTC-GGGATCGGTCGGGTCCCCCTCTGCATCCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
11884359 AT-CTGCCAG-AACCCTCAGTC----C-GATC-T-GA-TCGGAATGAACTCCGTATGGCTAAGCC
131 -TGCTGCC-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
11884414 AACCCACGAAACGAGC-GGGCTGGTGGACGGGCGGCGGGCGCTACGCCGGCCAGAGAGACGGGAT
194 AACCGACGAAACGAGCGGGGC--G-GG-C--G-GGCGGGCACTACGTCGGCCAGAGAGACGGGAT
* * *
11884478 GCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCA
252 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
11884543 ATGCCATTTTTGTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
317 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * ** ** * *
11884608 CAAGACGTCTCCTTTTCTATTTTGCATAATTTTCAAAACTTTTTGTGGTTCGGGATTTTTAAAAA
382 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT-TAAA
* *
11884673 ATTTTTT-GGAAGGAGTTTCGGCCCCAAACTTGGTAGATCGTGATCCTTGTATTTTTCTTGGCAT
446 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCAT
* *
11884737 GCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTC
510 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
11884802 CCCATTTCAGACACTTTATTGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
575 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
11884867 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCAGCCA
640 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
11884932 TCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGCCAGAACCTCTATGCCGCCGGTCAGG
705 TCGCACATCATGTGCGCACA---CC---CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * ** * * * **
11884997 TTCTCTGGCGATGCTCCGGGGATGCT-GCCCCAGCGAAGAAAAATGCGGCACCAGCACTTGCTAG
764 TTCTCCGACGATGCTCCGACGATGGTGGCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * * * *
11885061 AGTCTAGCATGTGCTGCCTCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
828 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
11885126 G
893 G
* * ** *
11885127 CTTAGATTGGGAATGAACGT-CATATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAA
1 CTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
11885191 CCGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTACATGCTACCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * ** *
11885256 TTGCTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * * *
11885321 ACCAATGAAACGAG-TGGATGGGCGGGTGGGCACTACATCGGCCAGAGAAACGGGATGCGCAAGC
195 ACCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
*
11885385 CGTGGATCGATA-GGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
11885449 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * * * *
11885514 CCCATTTACTATTTTTCATGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCG
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
*
11885579 GAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
11885644 AAT--GC-----A----AAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
11885698 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGGT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
11885763 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * **
11885828 TGTGCGCACA--CCCCCCG---GCC----CCCTCTAT--CG-C--T--GGATC-CCCAATACTG-
715 TGTGCGCACACCCCCCCCGATCGCCGGAACCC-CAATGCCGCCGGTCAGGTTCTCCGACGA-TGC
* * * * *
11885875 TCGGTC-A-GGT-TCTCCGACGAAGAAAAATGAGGCACCAACACATGCCCGAGCCCAGCATGTGC
778 TCCGACGATGGTGGC-CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
11885937 TGCAGCAACCCTAGGT-TCGGTCTGATCTTAGACTGGGAATG-A------A--
842 TGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
11885980 CTT---C---------A-T---T-TGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
11886028 CGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATTGATCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
11886093 TACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGAAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
11886158 CCGACGAAACGAATGGGCGAGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGC
196 CCGACGAAACG-A---GC--G-GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * * *** *
11886223 ACAAGTCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTATGTGACAAT
254 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
11886288 GCCATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCA
319 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
11886353 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
384 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
*
11886418 TTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCA-
449 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
**
11886481 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTGCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
11886546 TTTCA-ATCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
579 TTTCAGA-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
11886610 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAACACCCATCG
643 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
11886675 CACATCATATGCGCACACCCCTCCGGCCCCCCAATCGTCGGAACCCCAATGCTGCCGGTCAGGTT
708 CACATCATGTGCGCACA-----CC--CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
** ** * * *
11886740 CTTTGACGATGCTCCGACGATGGTACCCCGACGAAAAAAAATGCGGCACCAGTACATTCCCGAGC
766 CTCCGACGATGCTCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
11886805 CTAGCATGTGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACT
831 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
11886861 TTGTATGCCT
Statistics
Matches: 16903, Mismatches: 2635, Indels: 2085
0.78 0.12 0.10
Matches are distributed among these distances:
791 2 0.00
793 376 0.02
794 3 0.00
795 7 0.00
796 20 0.00
797 20 0.00
798 25 0.00
799 7 0.00
801 14 0.00
802 10 0.00
803 7 0.00
804 3 0.00
805 12 0.00
806 11 0.00
807 5 0.00
808 5 0.00
814 5 0.00
815 5 0.00
817 1 0.00
818 5 0.00
819 1 0.00
820 7 0.00
821 6 0.00
822 11 0.00
823 20 0.00
824 3 0.00
825 5 0.00
828 4 0.00
829 4 0.00
830 4 0.00
831 11 0.00
832 3 0.00
833 1 0.00
834 2 0.00
835 4 0.00
836 166 0.01
837 4 0.00
839 10 0.00
840 1 0.00
841 38 0.00
842 9 0.00
843 15 0.00
844 108 0.01
845 188 0.01
846 9 0.00
847 31 0.00
848 8 0.00
849 2 0.00
850 1 0.00
851 2 0.00
852 12 0.00
853 9 0.00
854 178 0.01
855 2 0.00
856 9 0.00
857 5 0.00
858 6 0.00
859 3 0.00
860 4 0.00
861 1 0.00
862 82 0.00
863 11 0.00
864 41 0.00
865 7 0.00
866 11 0.00
867 8 0.00
868 107 0.01
869 358 0.02
870 216 0.01
871 10 0.00
872 7 0.00
873 8 0.00
874 2 0.00
875 5 0.00
876 6 0.00
877 81 0.00
878 12 0.00
879 195 0.01
880 602 0.04
881 423 0.03
882 187 0.01
883 346 0.02
884 31 0.00
885 57 0.00
886 439 0.03
887 450 0.03
888 542 0.03
889 242 0.01
890 268 0.02
891 995 0.06
892 853 0.05
893 928 0.05
894 439 0.03
895 912 0.05
896 482 0.03
897 229 0.01
898 549 0.03
899 593 0.04
900 910 0.05
901 55 0.00
902 951 0.06
903 592 0.04
904 452 0.03
905 246 0.01
906 170 0.01
907 5 0.00
908 15 0.00
909 11 0.00
910 12 0.00
911 15 0.00
912 10 0.00
913 14 0.00
914 2 0.00
915 3 0.00
916 4 0.00
917 5 0.00
919 5 0.00
920 2 0.00
921 9 0.00
922 3 0.00
923 5 0.00
924 6 0.00
925 10 0.00
926 16 0.00
927 13 0.00
928 10 0.00
929 18 0.00
930 17 0.00
931 7 0.00
932 5 0.00
933 15 0.00
934 14 0.00
935 7 0.00
936 6 0.00
937 7 0.00
938 8 0.00
939 11 0.00
940 8 0.00
941 1 0.00
942 11 0.00
943 16 0.00
944 18 0.00
945 9 0.00
946 13 0.00
947 22 0.00
948 21 0.00
949 35 0.00
950 23 0.00
951 20 0.00
952 7 0.00
953 10 0.00
954 10 0.00
955 22 0.00
956 22 0.00
957 7 0.00
958 13 0.00
959 34 0.00
960 37 0.00
961 16 0.00
962 19 0.00
963 13 0.00
964 31 0.00
965 9 0.00
966 9 0.00
967 6 0.00
968 2 0.00
969 7 0.00
970 16 0.00
971 19 0.00
972 9 0.00
973 2 0.00
974 5 0.00
975 14 0.00
976 2 0.00
977 14 0.00
978 23 0.00
979 18 0.00
980 33 0.00
981 13 0.00
982 10 0.00
983 14 0.00
984 8 0.00
985 6 0.00
986 3 0.00
987 12 0.00
988 23 0.00
989 12 0.00
990 4 0.00
991 20 0.00
992 7 0.00
993 15 0.00
994 13 0.00
995 1 0.00
996 2 0.00
997 12 0.00
998 2 0.00
999 11 0.00
1000 12 0.00
1001 8 0.00
1002 3 0.00
1003 11 0.00
1004 19 0.00
1005 7 0.00
1006 6 0.00
1007 6 0.00
1008 1 0.00
1009 1 0.00
1011 5 0.00
1013 1 0.00
1014 1 0.00
1015 3 0.00
1016 2 0.00
1017 8 0.00
1018 3 0.00
1019 4 0.00
1020 3 0.00
1021 3 0.00
1024 136 0.01
1025 85 0.01
1026 75 0.00
1027 87 0.01
1028 61 0.00
1029 62 0.00
1030 88 0.01
1031 173 0.01
1032 164 0.01
1033 64 0.00
1034 99 0.01
1035 119 0.01
1036 116 0.01
1037 113 0.01
1038 170 0.01
1039 134 0.01
1040 87 0.01
1041 69 0.00
1042 50 0.00
1043 44 0.00
1044 35 0.00
1045 24 0.00
1046 8 0.00
1047 21 0.00
1048 22 0.00
1049 34 0.00
1050 18 0.00
1051 12 0.00
1052 20 0.00
1053 107 0.01
1054 31 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
GACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:11871656 original size:26 final size:26
Alignment explanation
Indices: 11871620--11871672 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11871610 CCGGTTCGAT
*
11871620 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11871646 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11871672 C
1 C
11871673 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11872542 original size:26 final size:26
Alignment explanation
Indices: 11872513--11872563 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
11872503 CCTATCCGAT
11872513 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11872539 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
11872564 CTTTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11873443 original size:26 final size:26
Alignment explanation
Indices: 11873407--11873460 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
11873397 GATCTGATCC
11873407 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
11873433 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
11873459 TA
1 TA
11873461 AGTCAAACCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:11874329 original size:26 final size:26
Alignment explanation
Indices: 11874293--11874345 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11874283 CCGATCTGAT
* *
11874293 CTTATACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11874319 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11874345 C
1 C
11874346 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11876111 original size:26 final size:26
Alignment explanation
Indices: 11876065--11876117 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11876055 CCAGTCCGAT
* *
11876065 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
*
11876091 CTTAGACTGGGAATCAGCTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
11876117 C
1 C
11876118 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:11876992 original size:26 final size:26
Alignment explanation
Indices: 11876956--11877008 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11876946 CCTGTCTGAT
11876956 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11876982 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11877008 C
1 C
11877009 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11877865 original size:26 final size:26
Alignment explanation
Indices: 11877836--11877888 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11877826 CCGATCCAAT
11877836 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11877862 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11877888 C
1 C
11877889 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11878942 original size:26 final size:26
Alignment explanation
Indices: 11878906--11878984 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
11878896 CCAGTCTGAT
11878906 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11878932 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11878958 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11878984 C
1 C
11878985 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11880742 original size:26 final size:26
Alignment explanation
Indices: 11880713--11880764 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
11880703 CGGTCCAATA
11880713 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
11880739 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
11880765 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:11881649 original size:26 final size:26
Alignment explanation
Indices: 11881613--11881665 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11881603 ACTGGTCCAT
*
11881613 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11881639 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11881665 C
1 C
11881666 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11884240 original size:26 final size:26
Alignment explanation
Indices: 11884204--11884256 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11884194 CCGATCCGAT
11884204 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11884230 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11884256 C
1 C
11884257 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11884698 original size:898 final size:895
Alignment explanation
Indices: 11882655--11886860 Score: 5328
Period size: 898 Copynumber: 4.7 Consensus size: 895
11882645 GGGCGAGTAG
* *
11882655 TACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
11882720 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
11882785 AGCCTTCACGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
* * * * *
11882850 TTGCAGTTTGGGATCTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
196 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
11882915 TCCTTTTATCTTTGTTGGCATGCACAAAAAACTTCAGCTAAAACCTCGAAGTGTACAAGATTTTG
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
11882980 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAA
326 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
11883045 ATCTC-AATGCTCTTTAAGGGGGTGTGAGTTC-CGAGGATTGGAT-AGGGCTAGGGGGCCAATCA
391 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGGGGCCAAT-A
* * * *
11883107 T-AGAGCTAAGTACCAGCACCCATCGCACATCATGTGTGCACACACCCCTGGCCCCCCCGATCAT
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCTGG-CCCCCCGATCGT
* * * *
11883171 CGGAACCCCAATGCCGTCGGTCAGGTTTTTCCGGCAATGCTCCGACGATGGAGCCCCGATGAAGA
517 CGGAACCCCAATGCCGTCGGTCAGG-TTCTCCGGCGATGCTCCGAC-ATGGCGCCCCG-CGAAGA
** * * * * * *
11883236 AAAATGCATCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACGACCCTCAGAT-CGGTCCGA
579 AAAATGCGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GGTCCGGTCTGA
*
11883300 TCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
643 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACC
* * * ** *
11883365 CATGAAACGAGCGTACGGGCGCTCAACCTACCAGAGGGGCATGATGCGCAGGTCGGGGATCGACC
707 CACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACC
* * * *
11883430 GGGTCCGCCTCTGCATGCTATCGATCCTACTACCGCAACGCTCAGTCCAATCAATCTTAGACTGG
772 GGGTCCCCCTCTGCATGCTACCGATCCTACTACCGCAACCCTCAGT-C---CAATCTTAGACTCG
* *
11883495 GAATGAACTCCGTATGCCTAAGCCAACCAACGAATCGAGCGGGCGGT-TCGGCGGGCGGGCAC
833 GAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGTGGCGGCGGGCGGGCAC
** * * *
11883557 TACGCCTACCAGAGAGATGGGTTGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
11883622 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGTTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
11883687 AGCCTTCACGTGAAGTTTCGTGGCAAGATGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
* * * *
11883752 TTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGTCTTGA
196 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
11883817 TCCTTGTACTTTTT-TTGGCATGCACAAAAAAATTCAGCGAAAAGCTCGAAGTATACAAGATTTT
261 TCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
11883881 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTAGCAGCAAACCTCTAA
325 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
11883946 AATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
390 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
11884011 AAGGGCCAAGTACCAGGAGCCGTCGCACATCATGTGCGCACACCCCCTGGCCCCCTCGATCGTCG
455 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCC-CGATCGTCG
* * *
11884076 GAACCTCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTCATGGCGCCCCGTGCGAAGAAA
519 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-GACATGGCGCCCC--GCGAAGAAA
* * * * *
11884141 AATGCGGCACCAGCAGTTGACCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCT
581 AATGCGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* *
11884206 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCAC
646 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCAC
* * * **
11884271 GAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGATCGGTCGGG
710 GAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGG
* * *
11884335 TCCCCCTCTGCATCCTACCGATCC-ATCTGCCAG-AACCCTCAGTCCGATC-T-GA-TCGGAATG
775 TCCCCCTCTGCATGCTACCGATCCTA-CTACC-GCAACCCTCAGTCCAATCTTAGACTCGGAATG
* * *
11884395 AACTCCGTATGGCTAAGCCAACCCACGAAACGAGCGGGCTGGTGGACGG-GCGGCGGGCGC
838 AACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGC-GGTGG-CGGCG-GGCGGGCAC
*
11884455 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
11884520 CATCTTCATATTTTTGCGTGCCAATGCCATTTTTGTAGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * **
11884585 AGCCTTCACGTGAAGTTTCATGGCAAGACGTCTCCTTTTCTATTTTGCATAATTTTCAAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
** * * *
11884650 TTGTGGTTCGGGATTTTTAAAAAATTTTTT-GGAAGGAGTTTCGGCCCCAAACTTGGTAGATCGT
196 TTACGGTTCGAGATTTTT-TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA-CGT
* *
11884714 GATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTT
259 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
11884779 TGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTAGCAGCAAACCTGTA
324 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
11884844 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
11884909 TAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGCCA
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGTCG
* * * * **
11884974 GAACCTCTATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGGGAT-GCTGCCCCAGCGAAGAAA
519 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-GACATGGC-GCCCC-GCGAAGAAA
** * * * *
11885038 AATGCGGCACCAGCACTTGCTAGAGTCTAGCATGTGCTGCCTCAACCCTTGGTCCGGTCTGATCT
581 AATGCGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * * *
11885103 TAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACGTCATATGCCTAAGTCAACCCAT
646 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCGTATGCCTAAGTCAACCCAC
* * * *
11885168 AAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGG
710 GAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGG
* * * * * *
11885233 TCCCCCTCTACATGCTACCGATCTTGCTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGA
775 TCCCCCTCTGCATGCTACCGATCCTACTACCGCAA-CC-C--TC-AGTCCAATCTTAGACTCGGA
* * * * *
11885298 ATGAACTCCGTATGCCTAAGGCAACCAATGAAACGA--GTG-GAT-G-GGCGGGTGGGCAC
835 ATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGTGGCGGCGGGCGGGCAC
** * *
11885354 TACATCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGACA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
11885418 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * *
11885483 AGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTACTATTTTTCATGATTTTCGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
* *
11885548 TTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGA
196 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
11885613 TCCTTGTATTTTTGTTGGCATGCACAAAAAAAAT--GC-----A----AAGTGTAGAAGATTTTG
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
11885667 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
326 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
11885732 ATCTCAAGTGCTCTTTAAGGGGGTGTGAGGTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATA
391 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
11885797 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCTATCG-CTG
456 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCC-CGATCGTC-G
* * *
11885861 GATCCCCAATACTGTCGGTCAGG---T-------T-CTCCG--A----------CGAAGAAAAAT
519 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACATGGCGCCCCGCGAAGAAAAAT
* * * * * *
11885903 GAGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTAGGTTCGGTCTGATCTTAG
584 GCGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
*
11885968 ACTGGGAATG-A------A--CTT---C---------A-T--T-TGCTTAAGTCAACCCACGAAA
649 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAA
* * * * *
11886008 CGAGCGTGCGGGCGTTCAACCGGCCAGAGGGGCGGGATGCGCAAG-CTGAGGATTGATCGGGTCC
714 CGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGACCGGGTCC
* ** * * * *
11886072 CCCTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGAAATG
778 CCCTCTGCATGCTACCGATCCTACTACCGCAACCCTCAGTCC-A----ATCTTAGACTCGGAATG
* * ** * *
11886137 AACTCCATATGCCTAAGCCAACCGACGAAACGAATGGGCGAGCGGGTGGGCGGGCGGGCAC
838 AACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCG-G-TGG-CGGCGGGCGGGCAC
* * * * *
11886198 TACGTCGGCCAGAGAGATGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
** * *
11886263 CATCTTCATATTTCTATGTGACAATGCCATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* **
11886328 AGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
11886393 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGA
196 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
11886457 TCCTTGTATTTTTGTTGGCAAGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
**
11886521 TGACCATTTGAAAAAAGTGTCTGCATTTCA-ATCACTTTAATGGCTACTGGCAGCAAACCTGTAA
326 TGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
11886585 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAC
390 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
11886650 AAGGGCCAAGTACCAACACCCATCGCACATCATATGCGCACACCCCTCCGGCCCCCCAATCGTCG
455 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CTGGCCCCCCGATCGTCG
* * ** * ** *
11886715 GAACCCCAATGCTGCCGGTCAGGTTCTTTGACGATGCTCCGACGATGGTACCCCGACGAAAAAAA
519 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGAC-ATGGCGCCCCG-CGAAGAAAA
* * * * *
11886780 ATGCGGCACCAGTACATT-CCCGAGCCTAGCATGTGCTGTCGTAACCCTCAGTCCGGTCTGATCT
582 ATGCGGCACCAGCAC-TTGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
11886844 TAGACTGGGAATGAACT
646 TAGACTGGGAATGAACT
11886861 TTGTATGCCT
Statistics
Matches: 2908, Mismatches: 302, Indels: 208
0.85 0.09 0.06
Matches are distributed among these distances:
831 5 0.00
832 3 0.00
834 1 0.00
835 3 0.00
836 141 0.05
837 1 0.00
838 2 0.00
839 2 0.00
841 1 0.00
842 1 0.00
843 8 0.00
844 92 0.03
845 183 0.06
850 1 0.00
853 4 0.00
854 207 0.07
855 11 0.00
857 1 0.00
861 1 0.00
862 75 0.03
864 1 0.00
865 5 0.00
868 1 0.00
873 1 0.00
875 1 0.00
876 4 0.00
877 1 0.00
879 72 0.02
880 2 0.00
884 1 0.00
886 192 0.07
887 22 0.01
890 1 0.00
895 45 0.02
896 5 0.00
897 217 0.07
898 513 0.18
899 296 0.10
900 2 0.00
901 3 0.00
902 437 0.15
903 244 0.08
904 61 0.02
905 2 0.00
906 36 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGTCGGA
ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACATGGCGCCCCGCGAAGAAAAATGC
GGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCC
TCTGCATGCTACCGATCCTACTACCGCAACCCTCAGTCCAATCTTAGACTCGGAATGAACTCCGT
ATGCCTAAGCCAACCAACGAAACGAGCGGGCGGTGGCGGCGGGCGGGCAC
Found at i:11885152 original size:26 final size:26
Alignment explanation
Indices: 11885101--11885153 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11885091 CCGGTCTGAT
*
11885101 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
11885127 CTTAGATTGGGAATGAACGTC-ATATG
1 CTTAGACTGGGAATGAAC-TCTATATG
11885153 C
1 C
11885154 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:11887553 original size:26 final size:26
Alignment explanation
Indices: 11887524--11887575 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11887514 CTAGTCCGAT
11887524 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11887550 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11887576 ACTAAGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11888317 original size:720 final size:708
Alignment explanation
Indices: 11886095--11888318 Score: 2787
Period size: 720 Copynumber: 3.1 Consensus size: 708
11886085 GTCGATCCTA
* *
11886095 CTGCCGCAACCCTCGGTCC-GATCCGATCTTAGACTAGAAATGAACTCCATATGCCTAAGCCAAC
1 CTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
* * *
11886159 CGACGAAACGAATGGGCGAGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCA
65 CGACGAAACG-A-GAG-G-G-GGG-CGGC-GGCGGGCACTACGTCGGCCAGAGAGATGGGATGCG
* * ** *
11886224 CAAGTCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTATGTGACAATG
123 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* *
11886289 CCATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAA
188 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAA
* * *
11886354 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
253 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTT
* *
11886419 TTTCGGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCAAAA
318 TTTCGGAAGCAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAA
**
11886484 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTGCATTT
383 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
11886549 CAATCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
448 CAA-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
11886614 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAACACCCATCGCACA
512 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
11886679 TCATATGCGCACACCCCTCCGG-CCCCCCAATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTT
577 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC--CGGGTCAGGTTC-T
* * * * * * *
11886743 TGACGATGCTCCGACGATGGTACCCCGACGAA-AAAAAATGCGGCACCAGTACATTCCCGAGCCT
639 CG--GATGCTTCGACGATGGTGCCCCGACGAAGAAAAAA-GTGGCACCAGCACATGCCCGAGCCC
11886807 AGCATGTG
701 AGCATGTG
* * * * * *** *
11886815 CTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAATC
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
* * * *
11886880 GAGGAAAC--GA-----GC-G-GGCGGGCACAACGTCGGCTAGAGAGACGGGATGCGCAAGCCGT
66 GACGAAACGAGAGGGGGGCGGCGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGT
*
11886936 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGGTGCCAATGCCAATTTT
131 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC-ATTTT
* *
11887001 T-TGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGATGACT
195 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGACGACT
* ** * * *
11887065 CGTTTTTTATTTTTCATGATTTTCAAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCAGA
260 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTC-GG
*
11887130 AAGC-GTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAA
324 AAGCAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAA
* * * * *
11887194 TTCGGCCAAAAA-TCAAAGTGTACAAGATTTTGTGACCATTTGACAAAAGTGTCCTCATTTCAGA
387 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA-A
*
11887258 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTC
451 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
11887323 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
516 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
11887388 GTGTGCACACCCCCCCTGCCCCCCCGATC-ACTGGAACCCCAATG-C----C--G---TC-GA--
581 GTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGGGTCAGGTTCTCGGATG
* * * * * *
11887439 --T----GATGGTGCCCCGACGAAGAAAAATGTGACACCGGCACATGCCCAAGCACAGTATGTG
645 CTTCGACGATGGTGCCCCGACGAAGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
11887497 CTGCCGTAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACT-C-----C----A-T----
*
11887562 ATGAACTTCGTATGACTAAGCCAACTGACGAAACGAGAGGGTGGGCGGACAGGCGGGCACTACGT
51 ATG-----C------CTAAGCCAACCGACGAAACGAGAGGG-GGGCGG-C-GGCGGGCACTACGT
* *
11887627 CGACCAGAGAAATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
102 CGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
11887692 TCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
167 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
11887757 TCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTTGC
232 TCACATGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTGC
* *
11887822 AGTTCAAGATTTTTTAAAATTTTTTCGGAAGCAGTTTTGGCCCGAAACTTGGTAGACGTGATCGT
296 AGTTCGAGATTTTTTAAAATTTTTTCGGAAGCAGTTTTGGCCC-AAACTTGGTAGACGTGATCCT
* * * *
11887887 TGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTTGAATTCTACAAGATTTTGTGAC
360 TGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
11887952 CATTTCAAAAAAGTGTCCCCATGTCGAACCAGTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
424 CATTTGAAAAAAGTGTCCCCATTTC-AA-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
11888017 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGG
487 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
11888082 GCCAAGTACCAGCACCCATCGCACATCA-GTGCGCACACCCCCCCGGCCCCCCCGCTCGTCGGAA
552 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAA
11888146 CCCCAATGCCGTTGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCC-ATCGAAGAAAAAA
617 CCCCAATGCCG--GGTCAGGTTCT-C-G-GATGCTTCGACGATGGTGCCCCGA-CGAAGAAAAAA
11888210 GTGGCACCAGCACATGCCCGAGCCCAGCATGTG
676 GTGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
11888243 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCC-TATGCCTAAGTCAAC
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC-TCCATATGCCTAAGCCAAC
* *
11888307 CTAAGAAACGAG
65 CGACGAAACGAG
11888319 CGTGCGGGTG
Statistics
Matches: 1294, Mismatches: 128, Indels: 164
0.82 0.08 0.10
Matches are distributed among these distances:
682 81 0.06
683 5 0.00
690 2 0.00
693 2 0.00
697 4 0.00
699 1 0.00
702 1 0.00
703 1 0.00
704 213 0.16
705 239 0.18
706 41 0.03
708 17 0.01
710 2 0.00
716 3 0.00
717 1 0.00
719 6 0.00
720 266 0.21
721 92 0.07
722 80 0.06
723 129 0.10
726 1 0.00
729 1 0.00
731 4 0.00
734 1 0.00
735 2 0.00
738 2 0.00
741 1 0.00
742 1 0.00
745 1 0.00
746 93 0.07
747 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (708 bp):
CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
GACGAAACGAGAGGGGGGCGGCGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAA
GCAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGGGTCAGGTTCTCGGATGCTTCGA
CGATGGTGCCCCGACGAAGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
Found at i:11888507 original size:147 final size:147
Alignment explanation
Indices: 11888240--11888517 Score: 328
Period size: 147 Copynumber: 1.9 Consensus size: 147
11888230 AGCCCAGCAT
* *
11888240 GTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCCTATGCCTAAGTCA
1 GTGCTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTTCCTATGCCTAAGCCA
* * ** * * *
11888305 ACCTAAGAAACGAGCGTGCGGGTGCTCAGCTGGCTAGAGGGGCGAGATGCGCAAGCCGGGGATCG
66 ACCGAAGAAACGAGCGGGCGGGCACTCAGCCGGCTAGAGAGACGAGATGCGCAAGCCGGGGATCG
11888370 ACAGGGTCCCCCTCTGC
131 ACAGGGTCCCCCTCTGC
* ** *
11888387 GTGCTGTCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGCC
1 GTGCTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTTCC-TATGCCTAAGCC
* * * * * * *
11888451 AACCGATGAAATGAGTGGGCGGGCACT-ACGCCGG-TCAGAGAGACGTGATGTGCAAGCTGTGGA
65 AACCGAAGAAACGAGCGGGCGGGCACTCA-GCCGGCT-AGAGAGACGAGATGCGCAAGCCGGGGA
11888514 TCGA
128 TCGA
11888518 TAAGGTGGTA
Statistics
Matches: 108, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
146 5 0.05
147 103 0.95
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.20
Consensus pattern (147 bp):
GTGCTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTTCCTATGCCTAAGCCA
ACCGAAGAAACGAGCGGGCGGGCACTCAGCCGGCTAGAGAGACGAGATGCGCAAGCCGGGGATCG
ACAGGGTCCCCCTCTGC
Found at i:11889608 original size:861 final size:858
Alignment explanation
Indices: 11887550--11892460 Score: 6017
Period size: 861 Copynumber: 5.7 Consensus size: 858
11887540 ACTCCGTATG
* * * * * *
11887550 CTTAGACTGGGAATGAACTTCGTATGACTAAGCCAACTGACGAAACGAGAGGGTGGGCGGACAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-CGG-GG-CGGG
* * * * *
11887615 CGGGCACTACGTCGACCAGAGAAATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
63 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGT
* * *
11887680 TTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGG
128 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGC
* *
11887745 TCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTG
193 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * *
11887810 AAACTTTTTTGCAGTTCAAGATTTTTTAAAATTTTTTCGGAAGCAGTTTTGGCCCGAAACTTGGT
258 AAAC-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
11887875 AGACGTGATCGTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTTGAATTCTACA
322 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-TAAAAACTCGAAGTGTACA
* * *
11887940 AGATTTTGTGACCATTTCAAAAAAGTGTCCCCATGTC-GAACCAGTTTAATGGCTACTGGCAGCA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-A-CACTTTAATGGCTACTGGCAGCA
11888004 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GG
449 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
11888068 AGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-GTGCGCACACCCCCCCGGCCCC
514 A-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC
* * * *
11888132 CCCGCTCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCC
577 CCCGATC-ACCGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGC-T---C-----TG----
* * * *
11888197 ATCGAAGAAAAA-AGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-GT
628 A-CGAAGAAAAATA-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCAGTCGCAACCCTCGATT
* * *
11888260 CCAGTCCGATCTTAGACTGGGAATGAACTTCC-TATGCCTAAGTCAACCTAAGAAACGAGCGTGC
691 CCAGTCCAATCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * *
11888324 GGGTGCTCAGCTGGCTAGAGGGGCGAGATGCGCAAGCCGGGGATCGACAGGGTCCCCCTCTGC--
755 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-CCGGGTCCCCCTCTGCGT
**
11888387 G-T---G---CTG-T--CGCAACCCTCGGTCTGGTCTAAT
819 GCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGAT
* * *
11888417 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGA---------GTGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGCGGGCGG
* * * *
11888473 GCACTACGCCGGTCAGAGAGACGTGATGTGCAAGCTGTGGATCGATAAGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTA
* * * *
11888538 GGCACATCTTCATATTTCTGCATGCCAGCTACCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTCTACATGCCA-ATGCCATTTTTATGGCTTGTAAATTCATACAATGCTC
*
11888603 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAA
195 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
** * * *
11888668 ACTTTTTGTGGTTTGAGATTTTTTAAAATTTCTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGA
260 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
11888733 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTAAAAAAGTTGAAGTGTACAAGA
325 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGT-AAAAACTCGAAGTGTACAAGA
* *
11888798 TTTTGTGACCATTTGAAAAAAGTG-CCTCCATTTCAGACACTTTAATGGCTACCGACAGCAAACC
389 TTTTGTGACCATTTGAAAAAAGTGTCC-CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
11888862 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTGGCAGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCC
*
11888927 AATATAAGGGCCAAGTACCAGCACACATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * *
11888992 CACCGAA-CCCAATACCGTCAGTCAGGTTCTCCAGTGATGCTCTGACGAAGAAAAATACGGCACC
583 CACCGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGAAGAAAAATACGGCACC
* * *
11889056 AGCACATGCCCGAGCCCAGCATGTGCAGTCACAACCCTCGATTCTA-TTCAATCTTAGACTGGGA
648 AGCACATGCCCGAGCCCAGCATGTGCAGTCGCAACCCTCGATTCCAGTCCAATCTTAGACTGGGA
* ** * * *
11889120 ATGAATTTGGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGG
713 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * *
11889185 CGAGATGTGCAAGCCGGGGATCAGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAAC
778 CGGGATGCGCAAGCCGGGGATC-GCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAAC
*
11889250 CCTCGATCTGG-CCTGAT
842 CCTCGGTCTGGTCC-GAT
* * *
11889267 CTTAGACTGGGAATGAACTCTGTATGCCTAACCCAATCGACGAAACGAGCGGGCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG--GGCGGG
* *
11889332 CGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGT
63 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGT
* *
11889397 TTAGGCACATCTTTATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAC
128 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGC
* * *
11889462 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTA
193 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * * *
11889527 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTGGGCTCCAAACGTGGTA
258 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
11889592 GACGTGATCGTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGGTAAAAACTCGAAGTGTACAA
323 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA-GTAAAAACTCGAAGTGTACAA
* * *
11889657 GATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTGAGACAATTTAATGGCTACTGGCAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
11889722 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGC
* * *
11889787 CAATATAAGGGCCAAGTACCAGCACCTATCTCACATCATGAGCGCACACCCCCCGG-CCCCCCGA
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * * * * **
11889851 TCGCCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGCACCGGTGAAGAAAAATACG
582 TCACCG-AACCCCAATGCCGTCGGTCAGGTTCTCC-G-G-TGATGCTCTGACGAAGAAAAATACG
* * * * *
11889916 GCACCAGCACATGCCCGAACCCAGCATGTGCTGTCGTAACCCTCG-GTCCAGTCCGATCTTAGAC
643 GCACCAGCACATGCCCGAGCCCAGCATGTGCAGTCGCAACCCTCGATTCCAGTCCAATCTTAGAC
* * * *
11889980 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGACCGTGTGGGCGCTCAGTCGGCCAG
708 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
** * * * ** * * *
11890045 AGGGAAGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTTTCAATCCTGGTGCC
773 AGGGGCGGGATGCGCAAGCCGGGGATC-GCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACC
*
11890110 GCAACCCTCGGTTTGGTCCGAT
837 GCAACCCTCGGTCTGGTCCGAT
11890132 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGGCGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGCGGGCGG
* * * *
11890196 GCACTACGCCGGCCAAAGAGATGGGATGGGCAAGCCGTGGATCGAT-AGGCGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTA
*
11890260 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGC-C
131 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT-GCTC
* * * *
11890324 CCTTGAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCATTTTCTATATTTCATGATTTTTGAA
195 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* *
11890389 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTGGGTAGA
260 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
11890454 CATGATCCTTGTATTTTT-CTGGCATGCACAAAAAAATTCAGGTAAAAACTCGAAGTGTACAAGA
325 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA-GTAAAAACTCGAAGTGTACAAGA
*
11890518 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
11890583 GTAAAATCTCAAATGCTCTTTAA-GGGGAGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCA
* * * * *
11890647 ATATAAGGGCTAAATACCAGCACCCATCGCACATCATGTCCGCACACCCCCCGACACCCCCGATC
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* *
11890712 GCCGAAACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGCAATG
584 ACCG-AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCT-C--TGA--------C-G-AA-G
* *
11890777 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA-CCGCAACCCTCGGTCTGGTCCG
634 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC-AGTCGCAA--C-C---C---T-CG
* *
11890841 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
688 A--TT---C----CA-G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
11890906 CCACGAAACGAGCATGCGGGCGC-CAAGCCGACCAGAGGGGCGGGATGCTCAAGCCGGGGATCGG
738 CCACGAAACGAGCGTGCGGGCGCTC-AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-G
* * * * * * *
11890970 CTGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTTGATCTGGTCCAAC
801 CCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGAT
*
11891028 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGC-GGGCGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGCGGGCGG
* * * *
11891092 GCACTACGTCAGCCA-AGGAGACGGGATGGGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GCACTACGCCGGCCAGA-GAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTT
* *
11891156 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAGGGCTTGTAAATTCATACAATGGC-
130 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT-GCT
* * * * *
11891220 CCCTTAAGCCTTCTCGTGAAGTTTCAAGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTAA
194 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * *
11891285 AACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAGCTTGGTAG
259 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * *
11891350 ACGTGATCCTCGTATTTTTGTTGGCATGCATAAAAAAATTCAACTAAAAGCTCGAAGTGTATAAG
324 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC-AGTAAAAACTCGAAGTGTACAAG
* *
11891415 ATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACA
388 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
11891480 TGTAAAATCTCAAATGCTGTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG-GAC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAG-C
* * * * **
11891543 TAATATAAAGGCCAAGTACCAGCACCCATCCCACACCATGTGCGCACACCCCCTAGCCCCCCCGA
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * * * **** *
11891608 TCACCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGATGCCTGAAC-C
582 TCACC-GAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGAAGAAAAAT--ACGG
* ** * * * * ** * ** *
11891672 CAACATGTGC-TGCCAC-AACCC-TCGATCTG--GTTCGATCTTAGACTGGTATTGAACTCCATA
644 CACCA-GCACATGCC-CGAGCCCAGC-ATGTGCAG-TCG--C-AACCCTCG-ATTCCAGTCCA-A
* * * *
11891732 TACTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCGAC-AAACAAACGTGCGGGCGCTCA
700 T-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
11891796 GTCGGCCAAAGGGGAGGGATGCGCAAGCCGAGGATCGACCGGGGTGCCCCTCTGCGTGCTACCGA
764 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-CC-GGGTCCCCCTCTGCGTGCTACCGA
* * *
11891861 TCCTACTACTAG-AACCCTTGGT-TCGGTCCGAT
827 TCCTGCTAC-CGCAACCCTCGGTCT-GGTCCGAT
* **
11891893 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAATGGGCAGGCGG-GTTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-GGCG--G
* * * *
11891957 GCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGCGATAGGTGGG
62 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGG
* ***
11892022 TTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
127 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
11892087 GTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTT
192 CTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* *
11892152 GAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTAGGCCCCAAACTTGGT
257 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
11892217 AGACATGATCCTTTTATTTTTCTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAA
322 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-TAAAAACTCGAAGTGTACA
*
11892282 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
11892347 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGAG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAG
*
11892412 CCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCGCACA
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
11892461 TCATTTGCTG
Statistics
Matches: 3543, Mismatches: 380, Indels: 239
0.85 0.09 0.06
Matches are distributed among these distances:
837 1 0.00
838 156 0.04
839 6 0.00
840 1 0.00
841 1 0.00
843 2 0.00
844 1 0.00
847 3 0.00
848 2 0.00
849 1 0.00
850 61 0.02
851 1 0.00
852 29 0.01
853 4 0.00
854 141 0.04
855 242 0.07
856 107 0.03
857 2 0.00
858 87 0.02
859 168 0.05
860 220 0.06
861 433 0.12
862 118 0.03
863 2 0.00
864 52 0.01
865 387 0.11
866 3 0.00
867 45 0.01
868 5 0.00
869 378 0.11
870 123 0.03
871 1 0.00
872 1 0.00
873 1 0.00
876 3 0.00
877 1 0.00
878 2 0.00
879 1 0.00
880 2 0.00
881 1 0.00
883 1 0.00
884 6 0.00
885 17 0.00
886 7 0.00
887 2 0.00
890 1 0.00
891 1 0.00
894 3 0.00
895 5 0.00
896 238 0.07
897 215 0.06
898 250 0.07
899 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (858 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGCGGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCAC
CGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGAAGAAAAATACGGCACCAGC
ACATGCCCGAGCCCAGCATGTGCAGTCGCAACCCTCGATTCCAGTCCAATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
GATGCGCAAGCCGGGGATCGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTC
GGTCTGGTCCGAT
Found at i:11890872 original size:26 final size:26
Alignment explanation
Indices: 11890843--11890895 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11890833 CTGGTCCGAT
11890843 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11890869 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11890895 C
1 C
11890896 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11893067 original size:26 final size:26
Alignment explanation
Indices: 11893037--11893089 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11893027 GTTGACTTAG
* *
11893037 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
11893063 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
11893089 G
1 G
11893090 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:11894861 original size:26 final size:26
Alignment explanation
Indices: 11894832--11894884 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11894822 GTTGACTTAG
* *
11894832 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11894858 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11894884 G
1 G
11894885 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11896172 original size:892 final size:892
Alignment explanation
Indices: 11892464--11902554 Score: 12950
Period size: 894 Copynumber: 11.4 Consensus size: 892
11892454 GCGCACATCA
* * *
11892464 TTTGCTGCCAGTAGCCATTAAGGTGTTTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
11892529 TGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * **
11892593 ACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CTCGAACCAAAAAAAGTTT
131 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTT
*
11892657 CAAAAATCGTGAAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
195 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
11892722 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-CAGAAATATGAAGATGTACCTA
260 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAGAAATATGAAGATGTGCCTA
* ** * * * *
11892786 AACCCACTTACCACCCTATCGATCGGCGGCTTGTGCATGCCGTCTCTCTAGCCGACGTAGTGCCC
324 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * *
11892851 GCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGA
389 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * ** * * *
11892916 CTGACGGTTGTGACAGCAGGAAT-GACAGCACGCAGAGAGGGACCCGACCGATCCCCAGCTTGCG
454 CCGAGGGTTGCGGTAGCAGG-ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * *
11892980 CATCTCGCCCCTCTAGCCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAG
518 CATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * *
11893045 AGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTT
583 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * * *
11893110 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCATCGTCGGGGCACCATAG
648 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * *
11893175 TCAGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGGCGATC-AGGGCGGCCAGAGG
713 TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGG-GGCC-GGGG
* *
11893239 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACATATATTGGCCCCCTATCCCTC
776 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
11893304 ATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
841 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
11893356 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
11893421 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
11893486 ACCAAGTTTGGGGCCAAAAATCGTTCCGAAAAAATGTTAAAAAATCCCAGAACCGCAAAAAGTTT
131 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCTGAACCGCAAAAAGTTT
* *
11893551 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGA
195 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
11893616 CCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
260 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAA
** * *
11893681 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTTTGGCCAACATAGTGCCAT
325 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-C--C---G-G-CGT
* * * * * *
11893746 CCCGCCCGCCCGCCCGCTCGTTTCGTTGGTAGGTTTAGGCATACGGAGTTAATTCCCAGTCTAAG
382 --AG--TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * **
11893811 ATTGGACCGGATCGAGGGTTGTGGTAGTAGGATCGGTAGCATGCAGAGGGGGACCCGGTCGATCC
443 ATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * * * **
11893876 CCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCTTGCACGCTCGTTTCGTGGGTTGACTT
508 CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * *
11893941 AGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCAATCCCAGTCTAAGATCGGACCGG
573 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* *
11894006 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAGTTTTCTTCGTCGG
638 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
11894071 GGCACCA---TC---G---C--CGGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATCG-GG
703 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGAGG
*
11894123 GGGTCCGGGGGGGGTGTGCGCACATGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCC
767 GGG-CC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
11894188 CCTTATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGG
830 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
11894251 TTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
11894316 TGTACAC-TCTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
66 TGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * * *
11894380 TCCCAAGTTTCGGGCCAAAACACTTTTCGAAAAAATTTTAAAAAATCC-CAAGCCGCAAAAAGTT
130 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA-CCGCAAAAAGTT
*
11894444 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGG
194 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
11894509 ACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTTCCTA
259 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTA
* * *
11894574 AACCAACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCT
324 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG---
* * * *
11894639 CCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTTCCAGTCTAAGATCA
386 CCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
11894704 GATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGA
447 GACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* * * * * *
11894769 CTTACGCATCCCGCCCCTTTGGCCGACTGAGCGCCTGCAGGCTCGTTCCGTTGGTTGACTTAGGC
512 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * ** * *
11894834 ATATGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCGGACTGGATCA
577 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
*
11894899 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
642 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * **
11894964 CCATCGCCGGACCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATC--GGGGGCC
707 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC
* * *
11895027 -CGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATC
772 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
11895091 CCTCACCAAACCTCGAGAACTAACACCCCCTTAAAGAGAATTTGAGATTTTATAGG
837 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
11895147 TTTACTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
11895212 TGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* *
11895277 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAATTTTG
131 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
* * * * *
11895342 GAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACATCACGTGAAGGCTTATGGGAC
196 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
11895407 CATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAA
261 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAA
* * *
11895472 CCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCTCGC
326 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* *
11895537 CTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
391 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * *
11895602 GAGGGTTGCGGTAGCAGGATTGGTAGCACGCATA-GGGGACCCGACCGATCCCCGGCTTGCGCAT
456 GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * ** * *
11895666 CCCACCCCTCTGGTCGACTGAGCGCCCTTACGCTCGTTTCGTGGGTTGACTTAGGCAAACGAAGT
521 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * ** *
11895731 TCATTCCCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACG
586 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * ** *
11895796 GCAGCACATGCTGGGCTCAGGCATGTGCTGCTACCGTATTTTTCTTCACCGGGGCACCACCGTCG
651 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* * * * ** *
11895861 GAGCATCGTCGGAGAACTTGACTGACGGCATTGGAGTTCTGGTGATCGAGGGGGTCGGGTGGGGT
716 GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGG-GGGGT
*
11895926 GTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
780 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
** * *
11895991 AACCTTTAGAACTTACACCCCCTTAAAGAGCATTTTAGATTTTACAGG
845 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
11896039 TTTGCTGCCTGTAGCCATTAAAATGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
11896104 TGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
11896169 ACCAGGTTTGGAGCCAAAACTCCTTCC-AAAAGAATTTTAAAAAATCCTGAACCGTAAAAAGTTT
131 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCCTGAACCGCAAAAAGTTT
* *
11896233 AAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
195 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
11896298 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
260 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAA
* *
11896363 ACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCG
325 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-
* * * *
11896428 CCTGCCCACCCGCTAGTTTCGTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCA
387 CC-G----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * ** * ** *
11896493 AACCAGACTGAGGGTTGCGACAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATTGATCCCCAG
447 GACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* * * *
11896558 CTTGCGCATCCCGCCCCTTTAGCCGGCTGAGCGCCTGCACGCTCGTTTCGT-GG--G---T----
512 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
*
11896613 -TA---A---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
577 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * *
11896662 AGGGTTGTGGCAGCACATGCTGGGCTTGGG-TTGTGCTGGTGCCGCATTTTTCTTCGTCGTGGCA
642 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * ** * * * * * *
11896726 CGATCGCCTGAGCATCACCGGAGAACTTGGCCGGCGGCATTGCGGTTCCGATGATCGGGGGGGCC
707 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC
* * * * *
11896791 -AGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCATTATATTAGCCCCCCATC
772 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
11896855 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
837 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
11896911 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
11896976 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACAG-C
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTC
** * *
11897040 TACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCTTGAACTGCAAAAAGTT
130 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCTGAACCGCAAAAAGTT
** * *
11897105 TTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGG
194 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
11897170 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-TAGAAATATGAAGATGTGCCT
259 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAGAAATATGAAGATGTGCCT
* * * * *
11897234 AAATCCACCTACCACGCAATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
323 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---
* *
11897299 CAACCGCCCGCCCGCCCGTTCATTAGTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
385 -----GCCCGCCCGCTCG-T--TTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * *
11897364 AGATCGGACCGGACCGAGGGTTATGGCAACAGGATCGGTAGCACGTAGAGGGGGACCCGACCGAT
441 AGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
** * * * *
11897429 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCGGTACGCTCATTTCGTGGTTTGAC
506 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
*
11897494 TTAGGCATACGGAGTTCATT-CC---C-AATC-TA---AG---A-T--C-G-----GATC-G---
571 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
** * *
11897534 -GACCGAGGGTTGTAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTC
636 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* **
11897598 GGGGCACCATCGTCGGAGCATCGTCGAAGCATCGTCGAAGAACCTGACCGGCAACATTGGGGTTC
701 GGGGCACCATCGTCGGAGCA---TC---G--TCG--G-AGAACCTGACCGACGGCATTGGGGTTC
* *
11897663 CAACGATCGGGGGGGCCGGGGGGGTGT--GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
755 CGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
11897726 TATATTGG---CC---CCCT-ATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGAT
820 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
11897784 TTTACAAG
885 TTTACAGG
* * *
11897792 TTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
11897857 TGTACACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * **
11897922 ACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACC-TTAAAAGTTTC
131 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
* * * * * * *
11897986 AAAAATCGTGAAAAATAGAAAACGAGTCCTTTTGGCATGAAACTTCATGTGAACGCCTAACGGAC
196 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
11898051 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCAAAA
261 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAA
* * * * *
11898116 CCCACCTACCACCCTATCGATCAACGACTTGCGCATCCCATCTCTCTGGCTGGTGTAGTGCCCGC
326 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C
* *
11898181 CTGCCCGTTCGCCCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
388 C-GCCCGCTCG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * *
11898246 ACTGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACACAGAGGGGGACCTGACCGATCCCCGAC
448 ACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * * * *
11898311 TTGCGCAACCCGTCCCTCTGGCCGGCTGAGCACCCGCACACTCGTTTCGTGAGTTGACTTAGGCA
513 TTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * ** * *
11898376 TACAGAGTACATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAAATCGA
578 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
* * * * * * **
11898441 GGGTTGTGGCAGTACATGCTAGGCTCAGGCATGTACTGGTGCCACATTTTTCTTCACCGGGGCAC
643 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * *
11898506 CATC-TCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGAGTTCC-AGTGATC-AGGGGGG
708 CATCGT-CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGA-GGGGG
*
11898568 CCGAGAGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACATTGGCCCTTATATTGGCCCC
770 CCG-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC-TTGGCCCTTATATTGGCCCC
* *
11898633 CTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGG
832 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
11898694 TTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
11898759 TGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
11898824 ACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT-CTCGAGCTGTAAAAAGTTT
131 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTT
*
11898888 CAAAAATCGTGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
195 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * *
11898953 CCATAGTAAGAATTTACAAGCCATAAAAATGGCATTGGCACA-TAGAAATATGAAGATGTACCTA
260 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAGAAATATGAAGATGTGCCTA
** * * * * * * *
11899017 AACAAACCTACCAACCTATCGATCCACAGCTAGTGCATCCCGTCTCTCTTGCCGGTGTAGCACCC
324 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG----T
* * * * * *
11899082 GCCCACCCGTTCGTTTCATCGGTTAGCTTAGGCATACGGAGTTAATTCCTAGTCTAAGATC--A-
385 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * *
11899144 --AACC-A-GATTG-AGTA--A-GATTGGCAGCACGCAGAGGGGAACCCGGCCGATCCCCGGCTT
450 CGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * *
11899201 GCGCATCCC-ACCCTCTGGCCGACTAAGCGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATA
515 GCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
11899265 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-ATTCCCAGTCTAAGATCAGACC-GAGCCGAG
580 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CCGAG
* * * * **
11899328 GGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGTCGCATTTTTCTTCATCGGATCACC
644 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * * **
11899393 ATC-ACTGGACCATCGCCGGAGAACCTGAACGGTGGCATTGGGGTTCCAGA-GATCGAGGGGGCC
709 ATCGTC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATCGAGGGGGCC
* *
11899456 -GGGGGGTGTGCGAACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
772 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
11899520 CCTCATCAAACCTCAAGAACTCACACCCCCTTTAAGAGTATTTGAGATTTTACAGC
837 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
11899576 TTTGCTGCCAATAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
11899641 TGTACACTTTGAGTTTTTAGATCAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* **
11899706 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATTTTGAACCGCAAAAAGTTTC
131 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
11899771 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
196 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
11899836 CATTGTATGAATTTACGAGCCATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAA
261 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAA
* * *
11899901 CTCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
326 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * *
11899966 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACT
391 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * *
11900031 AAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGCCTTGCACAT
456 GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * *
11900096 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAAGCATACGGAGT
521 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
11900161 TCATTCCCAGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATCGGACCAGACCGAGGGTTGTG
586 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * ** * *
11900226 GCAGTAGATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGCCG
651 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* * * * * *
11900291 GAGCATCGGCGGAGAACTTGACCGGCGGCATCGGGGTTCCGACGATCG-GAGGGGCTGAAGGGGG
716 GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAG-GGGGCCG-GGGGGG
*
11900355 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
779 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
11900420 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
844 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
11900469 TTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
11900534 TGTACACTTCGCGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
11900599 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAACCCGAA-TGCAAAAAGTTTC
131 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
* *
11900663 AAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGAC
196 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
11900728 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
261 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAA
* *
11900793 CCCACCT---A-CC-AT-GATCCACGGCTTGCACGTCCCGTCTCTCTGGCCGGCGTAGTGCCCGT
326 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--
* * * * * * *
11900852 CCGTCCATCCGCTCGTTTCATTGGTTGGCTTAAGAATACAGAGTTCATTCCCAATCTAAGATTGG
387 CCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * *
11900917 ACCAGACCGAGGGTTACAGTAGCAGGATCAGCAGCACGTAGAGGGGGACCCGACGGATCCCCAGC
448 ACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * *
11900982 TTGCGTATCCCGCCCCTCTGGCCGATTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCA
513 TTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
11901047 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGA
578 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
* *** * * * * * *
11901112 AGGTTGTAACAGCATATGCTGGGCCCGAGCATGTGTTGGTACCGCATTTTTCTTTG-CTGGGGCA
643 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCA
* *
11901176 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGAGCGGGCC
707 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC
*
11901241 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATC
772 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
11901306 CCTCATCAAACGTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
837 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* **
11901362 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGTTACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * * *
11901427 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCGACAAGAATATAAGGGTCATGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * ** *
11901492 ACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
131 ACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
* * * *
11901557 CGAAAATCGTAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTATGGGA
195 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
11901622 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ATCTAGAAATATGAAGATGTGCCTT
260 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGC-AGAAATATGAAGATGTGCCTA
* * *
11901686 AACCCACCTACCACCCTATCGATTCACGGCTTGTGCATCCCGTCTCTCTGGTCGGCGTAGTGCCC
324 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----
* *
11901751 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATT
385 ----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * *
11901816 GGACTGGACTGAGGGTTGCAGTAGCAAGATCGGTAGCACACAGAGGGGGACCTGGCCGATCCCCA
446 GGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * *
11901881 TCTTGTGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGG
511 GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * *
11901946 CATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAATATCAGACCAGACC
576 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
** * *
11902011 GAGGGTTAAGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA----T-TT--T------
641 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
11902063 ----TC-T-------TCGT--------C-G---G--GGCATTGGGGTTCCGACGATCG-GGGGGC
706 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGC
* * *
11902101 CGAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
771 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
11902166 CACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAGTTTACAGG
836 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
11902223 TTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * * * *
11902288 TATACACTTTGAGTTTTTAGCTGAATTTTTTTTTACATGCCAACAAAAATATAAAGATCATGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * ** *
11902353 ATCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAAATCCCGAACCGCAAAAAGTTT
131 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCTGAACCGCAAAAAGTTT
** * * *
11902418 TGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGGTTAATGGG
195 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGG
* * * *
11902483 -CCATTGTATGAATTAACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTACCTA
259 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTA
11902547 AACCCACC
324 AACCCACC
11902555 CGTCCACCCG
Statistics
Matches: 8094, Mismatches: 882, Indels: 477
0.86 0.09 0.05
Matches are distributed among these distances:
860 10 0.00
861 403 0.05
862 25 0.00
864 1 0.00
867 1 0.00
868 1 0.00
871 1 0.00
872 261 0.03
873 211 0.03
874 80 0.01
875 235 0.03
876 12 0.00
877 171 0.02
878 100 0.01
879 178 0.02
880 20 0.00
881 212 0.03
882 437 0.05
883 42 0.01
884 8 0.00
885 12 0.00
886 172 0.02
887 84 0.01
888 327 0.04
889 456 0.06
890 141 0.02
891 142 0.02
892 711 0.09
893 625 0.08
894 751 0.09
895 475 0.06
896 468 0.06
897 10 0.00
898 10 0.00
899 50 0.01
900 129 0.02
901 432 0.05
902 217 0.03
903 182 0.02
904 3 0.00
905 6 0.00
906 279 0.03
907 2 0.00
909 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (892 bp):
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
Found at i:11897621 original size:11 final size:11
Alignment explanation
Indices: 11897605--11897637 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
11897595 GTCGGGGCAC
*
11897605 CATCGTCGGAG
1 CATCGTCGAAG
11897616 CATCGTCGAAG
1 CATCGTCGAAG
11897627 CATCGTCGAAG
1 CATCGTCGAAG
11897638 AACCTGACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.24, C:0.27, G:0.30, T:0.18
Consensus pattern (11 bp):
CATCGTCGAAG
Found at i:11899307 original size:25 final size:26
Alignment explanation
Indices: 11899260--11899311 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
11899250 GTTGACTTAG
11899260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11899286 GCATACGGAGTT-ATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11899311 G
1 G
11899312 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11900176 original size:26 final size:26
Alignment explanation
Indices: 11900147--11900202 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
11900137 TGGGTTGACT
11900147 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
11900173 TAAGCATACGGAGTTCATTCGCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
11900199 TAAG
1 TAAG
11900203 ATCGGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:11900601 original size:893 final size:891
Alignment explanation
Indices: 11896621--11902554 Score: 7471
Period size: 893 Copynumber: 6.7 Consensus size: 891
11896611 GTTAACTTAG
* *
11896621 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* ** ** * * * **
11896686 CTTG-GGTTGTGCTGGTGCCGCATTTTTCTTCGTCGTGGCACGATCGCCTGAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGGCGGAGA
* * * * * *
11896750 ACTTGGCCGGCGGCATTGCGGTTCCGATGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTA
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGAGGGGGTGTGCGCACATGATGTG
* * * *
11896814 CGATGGGTGCTGGTACTTGGCCATTATATTAGCCCCCCATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
11896879 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
11896944 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
11897009 TGCATGGCAACAAAAATACAAGGATCACAG-CTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAA
391 TGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
** * ** *
11897073 AATTTTAAAAAAATCTTGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
455 AATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11897138 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * * *
11897203 CATTGGCACATAGAAATATGAAGATGTGCCTAAATCCACCTACCACGCAATCGATCCACGACTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-CTTG
* * *
11897268 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCAACCGCCCGCCCGCCCGTTCATTAGTTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCTCG-T--TTCG-TCGGTTG
* * * ** * *
11897333 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAACAGGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGTAGCAGGA
* ** **
11897398 TCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTT
766 TCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* * * *
11897463 GAGCGCCGGTACGCTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCATT-CC---C-AA
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
11897519 TC-TA---AG---A-T--C-G-----GATC-G----GACCGAGGGTTGTAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * ** *
11897563 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCA---TCG--G-
** * * *
11897628 ATCGTCGAAGAACCTGACCGGCAACATTGGGGTTCCAACGATCGGGGGGGCCG-GGGGG-GTGTG
125 --CG--G-AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGAGGGGGTGTGCG
11897691 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG---CC---CCCT-ATCAAACCT
185 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
11897749 TGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAA
250 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
11897814 GTGTTTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTGTAGCT
315 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
11897879 GAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
380 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
** **
11897944 CTTCCAAAAAAATTTTAAAAAATCCCGAACC-TTAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
445 CTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * * * * * *
11898008 CGAGTCCTTTTGGCATGAAACTTCATGTGAACGCCTAACGGACCATTGTATGAATTTACAAGCCA
510 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
11898073 TAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCAAAACCCACCTACCACCCTATCGATC
575 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
11898138 AACGACTTGCGCATCCCATCTCTCTGGCTGGTGTAGTGCCCGCCTGCCCGTTCGCCCATTTCGTC
640 CACG-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCTCG----TTTCGTC
*
11898203 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGTGGTAG
696 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGTAG
* * * * *
11898268 CAGGATCGACAGCACACAGAGGGGGACCTGACCGATCCCCGACTTGCGCAACCCGTCCCTCTGGC
761 CAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
11898333 CGGCTGAGCACCCGCACACTCGTTTCGTGAGTTGACTTAGGCATACAGAGTACATTCCCAGTCTA
826 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
11898398 A
891 A
* * * * * *
11898399 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAAATCGAGGGTTGTGGCAGTACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * *
11898464 CTC-AGGCATGTACTGGTGCCACATTTTTCTTCACCGGGGCACCATCTCCGGAGCATCGTCGGAG
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGGCGGAG
* * *
11898528 AACCTGACCGGCGGCATTGGAGTTCC-AGTGATCAGG-GGGGCCGAGAGGGGGTGTACGCACATG
130 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGAGGGGCC--GAGGGGGTGTGCGCACATG
*
11898591 ATGTGCGATGGGTGCTGGTACATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
191 ATGTGCGATGGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
11898656 ACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTC
255 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
11898721 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATT
320 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
11898786 TTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
385 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT
* * * * *
11898851 GAAAAAATTTTAAAAAATCTCGAGCTGTAAAAAGTTTCAAAAATCGTGAAAAATGGAAAACGAGT
450 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
11898916 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTAAGAATTTACAAGCCATAAAA
515 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*** * ** *
11898981 ATGGCATTGGCACATAGAAATATGAAGATGTACCTAAACAAACCTACCAACCTATCGATCCACAG
580 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-G
* * * * * * * * *
11899046 CTAGTGCATCCCGTCTCTCTTGCCGGTGTAGCACCCGCCCACCCGTTCGTTTCATCGGTTAGCTT
644 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAG----TGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** * * * *
11899111 AGGCATACGGAGTTAATTCCTAGTCTAAGA-T---C-AAAC-CA-GATTG-AGTA--A-GATTGG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGTAGCAGGATCGG
* * * * *
11899165 CAGCACGCAGAGGGGAACCCGGCCGATCCCCGGCTTGCGCATCCC-ACCCTCTGGCCGACTAAGC
770 CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* *
11899229 GCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
11899286 GCATACGGAGTT-ATTCCCAGTCTAAGATCAGACC-GAGCCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCGAGGGTTGTGGCAGCACATGCTGG
* * * ** * * * *
11899349 GCTCGAGCATGTGTTGGTGTCGCATTTTTCTTCATCGGATCACCATCACTGGACCATCGCCGGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGGCGGAG
* * * *
11899414 AACCTGAACGGTGGCATTGGGGTTCCAGA-GATC-GAGGGGGCCG-GGGGGTGTGCGAACAAGAT
130 AACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGA-GGGGCCGAGGGGGTGTGCGCACATGAT
*
11899476 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * *
11899541 CACACCCCCTTTAAGAGTATTTGAGATTTTACAGCTTTGCTGCCAATAACCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
11899606 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGATCAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
11899671 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAA
***
11899736 AAAATTTTAAAAAATTTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
11899801 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
11899866 GCATTGGTATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACAGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTT
*
11899931 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* *
11899996 CGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTAAGGGTTGCGGCAGCAGGATCGGCAGCACA
712 CGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACA
* *
11900061 CAGAGGGGGACCCGACCGATCCCCGCCTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
777 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* * *
11900126 CGCTCGTTCCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
842 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11900176 GCATACGGAGTTCATTCGCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* *
11900241 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCGGCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGGCGGAGA
* * *
11900306 ACTTGACCGGCGGCATCGGGGTTCCGACGATCGGAGGGGCTGAAGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCG-AGGGGGTGTGCGCACATGATGT
*
11900371 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
11900436 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
11900501 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
11900566 GTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
* * *
11900631 AATTTTAAAAAAACCCGAA-TGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
11900695 TGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
11900760 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT---A-CC-AT-GATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGC
* * * *
11900819 ACGTCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGTCCATCCGCTCGTTTCATTGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCG--C--CCGCTCGTTTCGTCGGTTGGCTTA
* * * * ** * * * *
11900884 AGAATACAGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTACAGTAGCAGGATCAGC
706 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGTAGCAGGATCGGC
** * * * * *
11900949 AGCACGTAGAGGGGGACCCGACGGATCCCCAGCTTGCGTATCCCGCCCCTCTGGCCGATTGAGCA
771 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
*
11901014 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
11901070 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAAGGTTGTAACAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * ** * * *
11901135 CCCGAGCATGTGTTGGTACCGCATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGGCGGAGA
* * *
11901200 ACCTGACCGACGACATTGGGGTTCCGACGATC-GAGCGGGCCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAG-GGGCCGAGGGGGTGTGCGCACATGATGT
* * *
11901264 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACGTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
11901329 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
**
11901394 TGGGGTTACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
11901459 GTGCGTGCCGACAAGAATATAAGGGTCATGTCTACCAAGTTTGGGGCCAAAAATCCTT-TCGAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT-G-AA
* * * * *
11901523 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCGTAAAAAATAGAAAACGAGTCAT
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
11901588 CTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
11901653 GCATTGGCAT-CTAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTATCGATTCACGGCT
583 GCATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCT
* *
11901717 TGTGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
11901782 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCAGTAGCAAGATC
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGTAGCAGGATC
* * * ** * * *
11901847 GGTAGCACACAGAGGGGGACCTGGCCGATCCCCATCTTGTGCATCCCGCCCCTCTAGCCGGCTGA
768 GGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
*
11901912 GCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
11901971 GCATATGGAGTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTAAGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* *
11902036 CTCGGGCATGTGTTGGTGCCGCA--TTT-TT-----------C-T----------T---C---G-
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGGCGGAGA
*
11902069 ---T---CGG-GGCATTGGGGTTCCGACGATCGG-GGGGCCGAGGGGGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGAGGGGGTGTGCGCACATGATGTG
* *
11902126 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
11902191 ACCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
11902256 GGGGATACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
11902321 TACATGCCAACAAAAATATAAAGATCATGTCTATCAAGTTTGGGGCCAAAAATCCTTCTAAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
** *
11902386 ATTTTAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
456 ATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
11902451 TGCCATGAAACTTCACATGAAGGGTTAATGGG-CCATTGTATGAATTAACAAGCCATAAAAATGG
520 TGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
11902515 CATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACC
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
11902555 CGTCCACCCG
Statistics
Matches: 4428, Mismatches: 484, Indels: 285
0.85 0.09 0.05
Matches are distributed among these distances:
860 10 0.00
861 404 0.09
862 26 0.01
863 3 0.00
866 1 0.00
870 1 0.00
871 1 0.00
873 2 0.00
874 2 0.00
875 171 0.04
876 6 0.00
877 30 0.01
878 97 0.02
879 178 0.04
880 16 0.00
881 211 0.05
882 438 0.10
883 37 0.01
884 5 0.00
885 7 0.00
886 171 0.04
887 83 0.02
888 95 0.02
889 90 0.02
890 123 0.03
891 137 0.03
892 154 0.03
893 547 0.12
894 385 0.09
895 156 0.04
896 4 0.00
897 2 0.00
898 10 0.00
899 47 0.01
900 2 0.00
901 369 0.08
902 217 0.05
903 180 0.04
904 3 0.00
905 4 0.00
907 2 0.00
909 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGGCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGAGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACACAGA
GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11901073 original size:26 final size:26
Alignment explanation
Indices: 11901044--11901096 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11901034 GTTGACTTAG
11901044 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11901070 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11901096 G
1 G
11901097 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11901981 original size:26 final size:26
Alignment explanation
Indices: 11901945--11901996 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11901935 GTTGACTTAG
11901945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11901971 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11901997 TATCAGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11903642 original size:26 final size:26
Alignment explanation
Indices: 11903612--11903664 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11903602 GTTGACTTAG
*
11903612 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
11903638 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11903664 G
1 G
11903665 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11904069 original size:900 final size:894
Alignment explanation
Indices: 11902746--11906209 Score: 4739
Period size: 900 Copynumber: 3.8 Consensus size: 894
11902736 GTTGACTTAG
* * ** * *
11902746 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTTTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGG
* * * *
11902811 CTCGGACATGTGTTGGTGCCGTATTTTTCTTCGTCAGGGCACCAT---C--G--T---CGGAGAA
66 CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAAGCATCACCGGAGAA
*
11902866 CCTAACCGACGGCATTGGGGTTCC-AGCGATCGGGGGGCCGGAGGGGGTGTGCGCACATGATGTG
131 CCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCC-G-GGGGGTGTGCGCACATGATGTG
* *
11902930 CGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCATATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
11902995 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
11903060 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** *
11903125 TGCATGCCAACAAAAATACAAGGATCTTGTCTACCAAGTTTGGGGCCAAAATTTCTTCTGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCTGAAAAA
****
11903190 ATTTTAAAAAATTTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
11903255 GCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
11903320 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
11903385 CACCCCGTCTCTCTGGCCAACGTAGTGCTCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
647 CATCCCGTCTCTCTGGCCAACGTAGTG-T---CCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** *
11903450 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGTTGCAGCAGCAAGATCG
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGTTGCGGCAGCAAGATCG
* ** * *
11903515 ACAGCACATAGAGGGGGACTCAGTAGATCCCTGGCTTGCACATCGTGCCCCTCTGGCCGGTTGAG
773 ACAGCACATAGAGGGGGAC-CAGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAG
* * *
11903580 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
837 CACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11903638 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGATTACGGCAGCACATGCCAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGG
*
11903703 CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCCTCGCCGAAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCC-AAGCATCACCGGAGA
* *
11903768 ACCTGACCGAAGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGTGTGCGTACATGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
11903832 ATGGGTGCTAGTACATGGCCCTTATATTGGCACCCTATCTCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
11903897 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAAGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
11903962 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
11904027 CGTGCCAACAAAAATATAAGGATCACGTCTACCATA-TTTGGGGGCAAAAATCCTT-TCGAAAAA
390 CATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTT-GGGGCCAAAATCCTTCT-GAAAAA
* *
11904090 ATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * **
11904155 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAATTCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
11904220 TTGGCACGCAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
11904285 CATCCCGTCTCTCTGGCCAGCGTAGTG-CCTGTCCGCCCGTCCGTTCGTTTCGTTGGTTGGCTTA
647 CATCCCGTCTCTCTGGCCAACGTAGTGTCC-GTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
11904349 GACATACGGAGTTCATTACTAGTCTAAGA-CAAGACCGGACTGAGGGTTGCGGCAACAGGATCGA
711 GGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACTGA-GGTTGCGGCAGCAAGATCGA
* * * * *
11904413 TAGCACATAGAGGGGGACCCAGCCGATCCCCAGCTTGTGCATCCCGACCCTCTGGCCGGTTGAGC
774 CAGCACATAGAGGGGGA-CCAGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGC
**
11904478 ACCCACACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 ACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
11904535 GCATACGGAGTTCATCCCCAGTTTAAGATCGGATCGGACCGAGGGTTACGACAGCACATGCGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGG
* *
11904600 CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATTACCGGAGA
66 CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCA-AGCATCACCGGAGA
* * *
11904665 ACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGTCGGGGGGGTGTGCACACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTG
* * * *
11904730 TGATGGTTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
11904795 ACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTATGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
11904860 GGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTTGAATTTTTAGCTGAATGTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
11904925 TGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCTAAAACTCCTTTTGATAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAA-TCCTTCTGAAAA
* * **
11904989 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
11905054 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
11905119 ATTGGCATGCAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * * *
11905184 GCATCCCGTCTCTCTGGCCGGCGTAGTGTCCGCCCGCCCGTCCGCCCATTTCGTCGGTTGGCTTA
646 GCATCCCGTCTCTCTGGCCAACGTAGTGTCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
11905249 GGCATACGGACTTCATTCCCAGACTAAGATCAGACCAGACCGAAGGTTGCGGGAGTAAGATCGAC
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG-AGGTTGCGGCAGCAAGATCGAC
** * * * **
11905314 AGCACGCAGAGGGGGACCTGATCGATCCCCAGCTTGCGCATCTTGCCCCTCTAGCCGACTGAGCA
775 AGCACATAGAGGGGGACCAG-TCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCA
* * *
11905379 CCCACACGCACATTTCGTTTGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
839 CCCACACG--C---TC----G-T---TT---CAT--GG-GTTGA----C--T-TAGGCATACGGA
*
11905444 GATCATTCCCAGTCTAA
878 GTTCATTCCCAGTCTAA
* * * *
11905461 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCACAAGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGG
** **
11905526 CTCAAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGC-CAAGCATCACCGGAGA
* * *
11905591 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGGTGTGCGCCCATGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
11905656 ATGGGTGCTGCTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACAG
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
11905721 CCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGA
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
11905786 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA-TTTTTGGCCGAATTTTTTTTTT
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGT
* * *
11905850 GCATGCCAAGAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCTTTCTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCTGAAAAAA
** * *
11905915 TTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCATCTTG
453 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
11905980 CCATTAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCAAAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
11906045 TGGCACCCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGT
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
11906110 ATCCCGTCTCTCTAGCCGAC---GT-T--GT--GCCCGCCCGCTCGTTTCCTCGGTTGGCTTAGG
648 ATCCCGTCTCTCTGGCCAACGTAGTGTCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
**
11906167 CATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGG
713 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGG
11906210 GTTACGATAG
Statistics
Matches: 2284, Mismatches: 228, Indels: 97
0.88 0.09 0.04
Matches are distributed among these distances:
892 97 0.04
895 4 0.00
896 67 0.03
897 269 0.12
898 12 0.01
899 10 0.00
900 1049 0.46
901 15 0.01
902 1 0.00
903 42 0.02
904 1 0.00
905 1 0.00
910 1 0.00
913 2 0.00
915 3 0.00
916 65 0.03
918 3 0.00
919 4 0.00
920 1 0.00
921 2 0.00
923 11 0.00
924 443 0.19
925 11 0.00
926 170 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGG
CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAAGCATCACCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCTGAAAAAATTT
TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCAACGTAGTGTCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGTTGCGGCAGCAAGATCGACAGCACA
TAGAGGGGGACCAGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCACCCACAC
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11904539 original size:26 final size:26
Alignment explanation
Indices: 11904509--11904561 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11904499 GTTGACTTAG
*
11904509 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11904535 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11904561 G
1 G
11904562 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11905444 original size:26 final size:26
Alignment explanation
Indices: 11905406--11905487 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
11905396 TTTGTTGACT
*
11905406 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATATGGAGTTCATTCCCAGTC
*
11905432 TAAGCATATGGAGATCATTCCCAGTC
1 TAAGCATATGGAGTTCATTCCCAGTC
11905458 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATATGGAGTTCATTCCCAGTC
11905484 TAAG
1 TAAG
11905488 ATCAGACCGG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
TAAGCATATGGAGTTCATTCCCAGTC
Found at i:11906820 original size:704 final size:704
Alignment explanation
Indices: 11905469--11906847 Score: 2127
Period size: 704 Copynumber: 2.0 Consensus size: 704
11905459 AAGCATATGG
*
11905469 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCACAAGCTAGGCTCAAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCACAAGCTAGGCTCAAGAA
* **
11905534 TGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACC
66 TGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCAAAGAACCTGACC
*
11905599 GGCGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGGTGTGCGCCCATGATGTGCGATGGGTGC
131 GGCGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
11905664 TGCTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAA
196 TGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
*
11905729 AGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTT
261 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTT
* * * * *
11905794 TTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTGGCCGAATTTTTTTTTTGCATGCCAA
326 TTTTCAAATGGTCAAAAAATCTTGTACACTTCGATTTTTAGCCGAATTTTTTTTGTGCAT-CAAA
* * * ** **
11905859 GAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAA
390 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTAAGAAAAAATAATAAAAA
* ** * *
11905924 ATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATTAAAC
455 ATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCACCTTGCCATGAAAC
* * * *
11905989 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCAAAAAAATGGCATTGGCACCCA
520 TTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCAAAAAAATGGCATTGGCACACA
* *** *
11906054 GAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGTATCCCGTCT
585 GAAATAGGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCGTCT
*
11906119 CTCTAGCCGACGTTGTGCCCGCCCGCTCGTTTCCTCGGTTGGCTTAGGCATACAA
650 CTCTAGCCGACGTAGTGCCCGCCCGCTCGTTTCCTCGGTTGGCTTAGGCATACAA
* * ***
11906174 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGATAGCACATGCTAGGCTTGGGAA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCACAAGCTAGGCTCAAGAA
* * **
11906239 TGTGCTGGTGCTGTATTTTTCTTCGTCGGGGTACCATCG-TCGGAGCATCGTCAAAGAACCTGAC
66 TGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCACCAAAGAACCTGAC
* * ** *
11906303 CGGCGGCATTGGGGTTCCGACGATTGGGGGGCCGGAGGGGTGTGCTTATATGATGTGCGATGGGT
130 CGGCGGCATTGGGGTTCCGACGATCGGAGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGT
* *
11906368 GTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
194 GCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
*
11906433 AAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATTG-GGACA
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGAGGACA
*
11906497 CTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAT-
323 CTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGA-TTTTTAGCCGAATTTTTTTTGTGCATC
*
11906560 AAAAAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCCTTAAGAAAAAATAATAA
387 AAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTAAGAAAAAATAATAA
* * *
11906625 AAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCACCTTGCCATGA
452 AAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCACCTTGCCATGA
*
11906690 AACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCAC
517 AACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCAAAAAAATGGCATTGGCAC
* *
11906755 ATAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCG
582 ACAGAAATAGGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCG
*
11906820 TCTCTCTGGCCGACGTAGTGCCCGCCCG
647 TCTCTCTAGCCGACGTAGTGCCCGCCCG
11906848 TCTGCCCGCT
Statistics
Matches: 608, Mismatches: 62, Indels: 9
0.90 0.09 0.01
Matches are distributed among these distances:
704 258 0.42
705 147 0.24
706 191 0.31
707 12 0.02
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (704 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCACAAGCTAGGCTCAAGAA
TGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCAAAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTT
TTTTCAAATGGTCAAAAAATCTTGTACACTTCGATTTTTAGCCGAATTTTTTTTGTGCATCAAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTAAGAAAAAATAATAAAAAA
TCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCACCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCAAAAAAATGGCATTGGCACACAG
AAATAGGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCGTCTC
TCTAGCCGACGTAGTGCCCGCCCGCTCGTTTCCTCGGTTGGCTTAGGCATACAA
Found at i:11907661 original size:26 final size:26
Alignment explanation
Indices: 11907632--11907684 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11907622 CCGGTCTGAT
11907632 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
11907658 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
11907684 C
1 C
11907685 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:11909436 original size:26 final size:26
Alignment explanation
Indices: 11909407--11909459 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11909397 CCAGTCCAAT
11909407 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
11909433 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
11909459 C
1 C
11909460 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:11910656 original size:903 final size:901
Alignment explanation
Indices: 11907228--11914893 Score: 9806
Period size: 879 Copynumber: 8.7 Consensus size: 901
11907218 TTCCGGTGAT
* * *
11907228 GGAGTTTTGGCCCCAAACTTTGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATC
1 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* **
11907293 CAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATCTGTCCCCATTTCAGACA
66 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
11907358 CTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
131 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
11907423 GAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
196 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGT
* * * * * *
11907488 GCGCACA--CCCCCTGACGCCCTGATCATC-GAAACCCAATGCCGTCGGTCAGGTTCT-C--CGA
260 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * * *
11907547 ---T-----GATGGTGCCCCGACGAAAAAAAATACGACACCAGCACATGCCTGAGCCCAGGATGT
325 TGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
11907604 GCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGG
390 GCTGCCGCAACCCTCGGT-CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
11907669 AATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGAGCGCTCAGTCGGCTAGAGGG
454 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
** **** * * * * * **
11907734 GCGGGATGCATAAGCTAAAGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTACTACCTTAA
519 GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAA
** * * * * **
11907799 CCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATTGATG-AA--
584 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
* * *
11907861 A-C-GA--GTGGGCGGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGA
649 AGCGGACGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *** *
11907922 TAGGCTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTGATGGCTT
714 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
* * * *
11907987 GTCAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAAATGACTCGTTTTCT
779 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * **
11908052 ATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTC-GAAA
844 ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-AA
* * * * *
11908110 GGATTTTTGGCCCCAAACTTGGAAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAACTT
1 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* * * *
11908175 CAGCTAAAAACTCGAAGTGTATAAAATTTTGTGACCATTTGAAAAAATTGTCCCTATTTCAGACA
66 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
11908240 CTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
131 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
11908305 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
196 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGT
* ** * *
11908370 GCGCACACCCCGCCGGCCAGCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGA
260 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * * *
11908435 TGCTCCGACGATGGTGCCCC-A-GCAAAGAAAAATGCGACACCAACACATGCCCGGGCCCAGCAT
325 TGCTCCGGCGATGGTGCCCCGATG--AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* ** *
11908498 ATGCTGTTGCAA----C--T--GTC-G---TT---CT--G---G--C-CC-AAT-CTTAGACTGG
388 GTGCTGCCGCAACCCTCGGTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * ** *
11908538 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCAACAAGAGG
453 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * ** * * *
11908603 GGCGGCATGCGCAAGCTGGGGATCGACCGAGTCCCCCTCTGCGTGCTGTCC-ATTCTGCTGCCAC
518 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG-CCAATCCTGCTGCCGC
* * * * * *
11908667 AACCTTTGGTCCGATCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
582 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
* * * * * * * * ** *
11908732 TGAGCGGGCGGGGCGGGCAGACGGGCACTGCACCGACCAGAGAGACGGGATTCATAAGTCGTGGA
647 CGAGCGGAC--GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
11908797 TAGATACGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTAGATGCCAATGCCATTTTTATG
710 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* *
11908862 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATT
775 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** *
11908927 TTTTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTT-TGAAA
840 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-AA
* * *
11908989 GGA-TTTCTGGCCCTAAATTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAAT
1 GGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
*
11909053 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGAC
65 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
11909118 ACTTTAATGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTATA-GAGGTGTGAGTTC
130 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA-AGGGGGTGTGAGTTC
* * *
11909182 TCAAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCAT
194 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCAT
* *
11909247 CTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
258 GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * ** * *
11909312 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATCCCCGAGCCCAGCAT
323 GATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * ** * *
11909377 GTGCTGCCGCAACCTTCAGTCCAGTCCAATCTTAGACTGGAAATGAACTCCATATGCTTAGACTG
388 GTGCTGCCGCAACCCTCGGT-CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* *
11909442 GGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
452 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** ** ** **
11909507 GGGTGGGATGCGCAAGCCGGGGATC-GACTAAGTCCCCCTCTGTATGCTATCAAT-CTGGCTATC
517 GGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCAATCCT-GCTGCC
* * * * * *
11909570 GCAACCCTCAGTTTGATCTGATCCTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGATGA
580 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* ** *
11909635 AATGAAAGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGATC-GGATGCGCAAGCCGTG
645 AACGAGCGGAC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA-CGGGATGCGCAAGCCGTG
* * *
11909699 GATCGATAGGGTGGTAGGTAGGTTTACGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
708 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
11909764 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
773 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
*
11909829 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCAGAA
838 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAA
11909893 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
1 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* *
11909958 CAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
66 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
11910023 CTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
131 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
11910088 GAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCGCATCATGG
196 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGT
* *
11910153 GCGCACA-CCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGA
260 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* *
11910217 TGCTCCGGCGATGGTGCCCC-AGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
325 TGCTCCGGCGATGGTGCCCCGA-TGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
11910281 TGCTGCTGTAACCCTCGGTCCAGTCTGACCTTAAATTGGGAATGAACTCCGTATGCTTAGACTGG
389 TGCTGCCGCAACCCTCGGT-CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
11910346 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGAGG
453 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * *
11910411 GGCAGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTGTGTGGTACCGATCCTGCTGCTGCA
518 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCA
* * * ** * *
11910476 AACCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTACACCTAAGTCAACCGACGAAAC
583 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
* * * *
11910541 GAGCGGACGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACCGAATGCGCAAGCCGTGGATA
648 GAGCGGAC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
11910606 GATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
712 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
*
11910671 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
777 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
11910736 CTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTGTTTAAAATTTTTTC-GAAA
842 CTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-AA
* *
11910796 GGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
1 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
**
11910861 CAAG-TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTTATTTCAGAC
66 C-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
11910925 ACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
130 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
11910990 TGAGGTTTGATGAGGGATAGGGGG-C----------CAAGTACCAGCAGCCATCGCACATCATGT
195 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAGTACCAGCACCCATCGCACATCATGT
* ** * * * ** * * * *
11911044 GCGCACACCCCCCCGACCCATCCGATCGCCTGTACATCAATGCCGCCGATCAGGTTCTCCGGCAA
260 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * *
11911109 TGCTCCGGCGATGGTGCCCTGATGAAGAAAAATACGGCACCAGCACATGCCCAAGCACAGCATGT
325 TGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
11911174 GCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAGTGGG
390 GCTGCCGCAACCCTCGGTCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
11911239 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCGCTCAGCCAGCCAGAGGG
454 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * *
11911304 GCGGGATGCGTAAGCCGGGGATCGGTCGGGTGCCCCTCTACGTGCTGTCAATCCTACTGCCCCAA
519 GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAA
* ** *
11911369 CCCTCGGTCTGGACCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACG
584 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
* * *
11911434 AGC--A-TGCGGGTGGGCGGGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
649 AGCGGACGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
11911496 TAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTTTGGCTT
714 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
* * * *
11911561 GTAAATTAAAACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCT
779 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
11911626 ATTTTTCATGAATTTTGAAACTTTCTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAA
844 ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAA
* * *
11911683 AGACGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAACT
1 GGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
*
11911748 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAGAC
65 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
11911813 ACTTTAACGGCTACTAGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCT
130 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
11911878 CGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCAGCCATCGCACATCATG
195 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATG
* * * * ** * *
11911943 TGTGCACACCCCCCCCGGCCCCTCCGATCATCGGTACCTTAATACCGTCGATCAGGTTCTCCGAC
259 TGCGCACA-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* ** * * *
11912008 GTTGCTCTAGCGATGGTGCCTCGATGAAGAAAAATATGGCACCAGCACATGCCCGAGCCTAGCAT
323 GATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
11912073 GTGCTGCCGCAA--C-C---C--TC-GATC-----C---G-AT----T-CG-AT-CTTAGACTGG
388 GTGCTGCCGCAACCCTCGGTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
** * *
11912113 GAATGAACTCCGTATGCCTAAGTTGACCCACGAAACGAACGTGCGGGTGCTCAGCCGGCCAGAGG
453 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * *
11912178 GGTGGGATGCACAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACCACA
518 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCA
* * *
11912243 ACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAAA
583 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AAA
11912308 CGAGCGGACAGGCGGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
647 CGAGCGGAC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
11912372 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
711 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
*
11912437 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTT
776 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * *
11912502 TCTATTTTTCATGATTTTTTAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAA
841 TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAA
* * *
11912563 GGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATT
1 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* *
11912628 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CACATTTCAGACA
66 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
11912692 CTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
131 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
11912757 GAGGTTTGATGAGGGATAGGGGG-C----------CAAGTACCAGCAGCCATCGCACATCATGTG
196 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAGTACCAGCACCCATCGCACATCATGTG
* ** * ** * * *
11912811 CGCACACCCCCCCGACCCATCCGATCGTCGGTACATCAATGCCGTCGATCAGGTTCTCCGGCAAT
261 CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * *
11912876 GCTCCGGCGATGGTGCCCTGATGAAGAAAAATACGGCACCAGCACATGCCCAAGCACAGCATGTG
326 GCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * *
11912941 CTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAGTGGGA
391 CTGCCGCAACCCTCGGTCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * *
11913006 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGTGGGCGCCCAGCCAGCCAGAGGGG
455 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * *
11913071 CGGGATGCGTAAGCCGGGGATCGGTCGGGTGCCCCTCTACGTGCTGTCAATCCTACTGCCCCAAC
520 CGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAAC
* ** *
11913136 CCTCGGTCTGGACCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGA
585 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA
* * *
11913201 GC--A-TGCGGGTGGGCGGGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
650 GCGGACGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
11913263 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
715 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
*
11913328 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTA
780 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* *
11913393 TTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTTAAAATTTTTTCAGAA
845 TTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCAGAA
* * *
11913451 GGCA-TCTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAATAAT
1 GG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
11913515 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
65 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
11913580 ACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGGGTGTGAGTTCT
130 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
** *
11913645 TAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAGGTACCAGCACCCATCGCACATCATG
195 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC-AAGTACCAGCACCCATCGCACATCATG
* * *
11913710 TGCGCACACCCTCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCT-C--CG
259 TGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * **
11913772 A--------CGATGGTGCCCCGGTGAAGAAAAATGCAACACCAGCACATGCCCGAGCCCAGCATG
324 ATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * ** *
11913829 TGCTGTCGCAACCCTCGGTCCGGTCTGAAATTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
389 TGCTGCCGCAACCCTCGGT-CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
11913894 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGTCGGCCAGAGG
453 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * *
11913959 GGCGGGATGCGCAAGTCGGGGA----TC--G----AC-C--AG-G-T-CC-A----GCTGCCGCA
518 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCA
* * * *
11914003 ACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTATGCCAACCGACGAAAC
583 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
* * * * *
11914068 GAGCGGGCAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCATGGATCG
648 GAGCGGACGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
11914133 ATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
713 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
* * *
11914198 TGTAAATTGATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGCAAGACGACTCGTTTTC
778 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
11914263 TATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAA
843 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAA
* * *
11914322 GGAGTTTTTGCCCCAAACTTGGTAAACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAA-T
1 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* *
11914386 --GC-----A----AAGTGTAGAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACA
66 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
11914440 CTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTC
131 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
11914505 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
196 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGT
*
11914570 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACGA
260 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * * * *
11914635 TGCTCCGGTGATGGTGCCCAG-CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCTAGTATGT
325 TGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
*
11914699 GCTGCCGCAACCCTTGGTTCAGTCTGATCTTAGACT--G---GAA------ATG---A-AC----
390 GCTGCCGCAACCCTCGG-TCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
11914745 --T---CT--GTATGCTTAAGTCAACCCACGAAATGAGCGTACAGGG-GCTCAGCCGGCCAGAGG
454 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGG
* * * * *
11914802 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGTTACCGCA
518 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCA
*
11914867 ACCCTCGATCTGGTCTGATCTTAGACT
583 ACCCTCGGTCTGGTCTGATCTTAGACT
11914894 TGGCCCCAAA
Statistics
Matches: 5978, Mismatches: 630, Indels: 370
0.86 0.09 0.05
Matches are distributed among these distances:
843 67 0.01
844 3 0.00
845 2 0.00
847 2 0.00
848 1 0.00
849 1 0.00
853 1 0.00
854 3 0.00
855 1 0.00
856 1 0.00
857 1 0.00
858 4 0.00
859 225 0.04
860 3 0.00
862 3 0.00
863 1 0.00
864 35 0.01
865 115 0.02
866 34 0.01
867 2 0.00
868 3 0.00
869 134 0.02
870 178 0.03
871 83 0.01
872 210 0.04
873 3 0.00
874 4 0.00
875 183 0.03
876 11 0.00
877 3 0.00
878 100 0.02
879 898 0.15
880 16 0.00
881 1 0.00
882 252 0.04
883 5 0.00
884 17 0.00
885 25 0.00
886 10 0.00
887 223 0.04
888 562 0.09
889 99 0.02
890 194 0.03
891 216 0.04
892 329 0.06
893 1 0.00
894 1 0.00
895 4 0.00
896 51 0.01
898 3 0.00
899 1 0.00
900 37 0.01
901 186 0.03
902 5 0.00
903 772 0.13
904 474 0.08
905 179 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
GCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACC
CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
CGGACGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAA
Found at i:11911238 original size:26 final size:26
Alignment explanation
Indices: 11911202--11911254 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11911192 CTGATCCGAT
11911202 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11911228 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11911254 C
1 C
11911255 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11913004 original size:26 final size:26
Alignment explanation
Indices: 11912968--11913020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11912958 CTGATCCGAT
11912968 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11912994 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11913020 C
1 C
11913021 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11913888 original size:26 final size:26
Alignment explanation
Indices: 11913859--11913910 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11913849 CGGTCTGAAA
*
11913859 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
11913885 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
11913911 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:11915341 original size:26 final size:26
Alignment explanation
Indices: 11915305--11915357 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11915295 CTGGTTCGAT
11915305 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGAGTGGGAATGAACTCCGTATG
11915331 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGAGTGGGAATGAACTCCGTATG
11915357 C
1 C
11915358 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGAGTGGGAATGAACTCCGTATG
Found at i:11916234 original size:26 final size:26
Alignment explanation
Indices: 11916198--11916249 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11916188 CTATCCAATT
*
11916198 TTAGATTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
11916224 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
11916250 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:11916948 original size:26 final size:26
Alignment explanation
Indices: 11916919--11916971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11916909 CCAGTCCGAT
*
11916919 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11916945 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11916971 C
1 C
11916972 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11918442 original size:867 final size:866
Alignment explanation
Indices: 11917152--11922456 Score: 5872
Period size: 904 Copynumber: 5.9 Consensus size: 866
11917142 ACGAAATGAA
* *
11917152 GCCAGAGAGACGGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
11917217 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTC
66 ATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
11917282 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * *
11917347 TCGAGATTTTTTTAAATTTTTTCGAAAGGTGTTTTTTCCCC-AACTTGGTAGACGTGATCCTTGT
196 TCGAGATTTTTTAAAATTTTTTCGAAA-GAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGT
**
11917411 ATTTTCATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
260 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
11917476 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
** *
11917541 ATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATCAGGGCCA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* ** *
11917606 AGTACCAGCACCGATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCACCGGAACCCTA
455 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-GGCCCCCCCGATCGTCGGAACCCCA
* *
11917671 ACT-CCATC-GG-TC-AGGTTCTCCGACGATGGTGCCCCGACAAAGAAAAATACGACACCAACAC
519 A-TGCCATCAGGTTCTAGGTGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAACAC
* *
11917732 ATGCCCAAGCCCAGCATGTGCTTTCCGCAACCCTCGATC-C-GG-TCTG-ATCTTAGACTGGGAA
583 ATGCCCGAGCCCAGCATGTGC-TGCCGCAACCCTCGATCACGGGATCTGTATCTTAGACTGGGAA
* * * * *
11917793 TGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTTAACCGGCCAGAGGGGT
647 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCGGCCAGAGGGGC
* * * *
11917858 GGGATACGA-AAGCTGGGGATCGACTGGGTCCCCCTCTGCGTGTTGCCGATCCTGTTGCCACAAC
712 GGGATGC-ACAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAAC
* * *
11917922 CCTCGGT-TCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACG
776 CCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
*
11917986 AACGGGCGGGTGGGCGGGCGAGCACAACGTCG
840 AACGGGC-GG-GGGC-GGCG-GCACTACG-CG
* * * * *
11918018 ACCAGAGATATGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGCGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
11918083 ATATTTCTGAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTACCTTAAGCCTTC
66 ATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
11918148 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACCTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * * * ** **
11918213 TTGGGATTTTTTAAAAATTTTTCAGAAAGTGTTTTTGCCAAAAACTTAATAGACGTGATCCTTGT
196 TCGAGATTTTTTAAAATTTTTTC-GAAAGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * * *
11918278 ATTTTTCTTGGCATGCATAAAACAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGCCCAT
260 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* ** *
11918343 TTGAAAAAAGTGTCCCAATTTTTGACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
11918408 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
11918473 AGTACCAGCATCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCCCGATCGTCAGAACCCC
455 AGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCGGCCCCCCCGATCGTCGGAACCCC
* * * * ** * * *
11918538 AATGCC-GCCGG-TC-AGGTTCTCCGATGATGGTGCCTTGGCGAAGAAAAATACGACACCAATAG
518 AATGCCATCAGGTTCTAGGTGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAACAC
*
11918600 ATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAAC
583 ATGCCCGAGCCCAGCATGTGCTGCCGCAA--C-C---C---T-CGATC----AC-GGG-AT---C
* * * * *
11918665 TCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCGATGAAATGAGGGTGCGGG
629 T--GTAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGG
* * * * *
11918730 TGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGTCGAGGATCGACCGGGTCCCCCTCTGTGTGCT
691 TGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCT
* * ** *
11918795 ACCGATCATGCTGCTGCAAACCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
756 GCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
11918860 TAAGCCAACTGACGAAATGAACGAGC--GGGC-G-GGCACTACGTCG
821 TAAGCCAACCGACGAAACGAACGGGCGGGGGCGGCGGCACTACG-CG
*
11918903 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
11918968 ATATTTCT-ACGTGCC-ATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 ATATTTCTGA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * **
11919031 CACGTGAAGTTTCATGG-AAAATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGG
130 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * *
11919095 TTCGAGATTTTTGAAAATTTTTTCGAAAGGAG-TTTTGGCCCAAACTTGATAGATGTGATCCTTG
195 TTCGAGATTTTTTAAAATTTTTTCGAAA-GAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTG
* *
11919159 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCG
259 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * *
11919224 TTTGAAAAAAGTATCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
11919289 AATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCA-CGATAGGGGGCCAATATAAGGGC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGC
* * * * *
11919353 CAAGTACTAGAAACCATTGCACATCATGTGCGCACAGCTCCCTTGGCCCCCCCGATCGTCGGAAC
453 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCC-CGGCCCCCCCGATCGTCGGAAC
* * * * ** *
11919418 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-AGCGATGGTGTCTCGGTGAAGAAAAATG
515 CCCAAT---GCC-ATCAGGTTCT---A-GGTGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATA
* *
11919482 CGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAAACCTCGATCCGGTCTGATCTTAGA
571 CGACACCAACACATGCCCGAGCCCAGCATGTGCTGCCGC-AA---C---CC--TC-GATC----A
* * *
11919547 CTGGGAATGAACTCCCTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
622 C-GGG-AT---CT--GTAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* ** *
11919612 TGAACGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCG-GTCGGGTCC
679 CGAGTGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACT-GGGTCC
* * * * * * * * * *
11919676 CTCTCTGCATGTTTCTGATCC-GACTACTACAACCCTCGGTCCGATCTGATCTTACACTGGGAAT
743 CCCTCTGCGTGCTGCCGATCCTG-CTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
* * *
11919740 AAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGGCGGGTGGGCGGGCA
807 GAACTCCGTATGCCTAAGCCAACCGACGAAACGA----ACGGGC-GG-GGGC-----GGC-GGCA
11919805 CTACGCCG
860 CTACG-CG
* * * * *
11919813 GCCAAAGAGACGAGATGTGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
11919878 ATATTTCT-ATGTGCCAATGCCATTTTGATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTT
66 ATATTTCTGA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
11919942 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-TTTTGT--G
130 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT-TACG
* * * * *
11920004 CTTCGAGATTTTTTAAAATTTTTTCGGAAGGGGTTTTACCCCAAACTTGGTAGACGTGATCCTTG
194 GTTCGAGATTTTTTAAAATTTTTTCGAAAGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTG
* *
11920069 TATTTTTGTTGGCATGCACAAAACATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
259 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
**
11920134 TTTGAAAAAAGTGTCCCCATTTCAGAGTCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * ** *
11920199 AAAGCTCATTAAGGCAGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
**
11920264 AAG-ACCAGCACCCATCGCACATCATGTGCGCACACCCCCGG-CCCCTTGATCGTCGGAACCCCA
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACCCCA
* *
11920327 ATGCCACCGATCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACA
519 ATG---CC-ATCAGG-T-TCT-A-GGTGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACA
*
11920392 CCAACACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCATTCTGGTCCGATCTTAGACTGGG
576 CCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA--C-C---C---T-CGATC----AC--GG
*
11920457 AATGAACTCTGTATGCTTAGACTGGGAATG-ACTCTGTATGCCTAAGTCAACCCACGAAACGAGT
625 ---G-A-TCTGTAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGT
* * ** ** *
11920521 GTGCGGGTGCTCAGTCGGCCAGAGGGGTGGGATGCGTAAGCCGACGATCGA-TCGGGTCCCCCTT
684 GTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACT-GGGTCCCCCTC
* * ** ** * *
11920585 TGTGTGCTGCTGATCCTGCTGCCACAACCCTCAATCCAGTCTGATGTTAGATTGGGAATGAACTC
748 TGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* *
11920650 CGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCAGGCGAGCAGGCGAGCACTATGCG
813 CGTATGCCTAAGCCAACCGACGAAACGA--A--CGGGC-GG-GGGC-GGCG-GCACTACGCG
* * * *
11920712 ACCAGAGAGACGGGATGTGGAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
11920777 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
11920842 CCGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * * *
11920907 TTGAGATTTATTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT-GCACGTGATCCTTG
196 TCGAGATTTTTTAAAATTTTTTC-GAAAGAGTTTTTGCCCCAAACTTGGTAG-ACGTGATCCTTG
* *
11920971 TATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGATGTGTACAACA-TTTGTGACC
259 TATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
11921035 ATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGCTACTGGCAGGAAACATGTAAAATCTC
323 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
11921100 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGAGGGCCAATATAAGGGC
388 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
11921165 CAAGTACC-GACACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCC
453 CAAGTACCAG-CACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACCC
*
11921229 CAATGCCACCGGTCAGGTTCTCTAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGG
517 CAATGCCA----TCAGG-T-TCTAG-G-TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGA
*
11921294 TACCAACACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCAATCTTAGACTG
574 CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G---------ATC----AC-G
* * *
11921358 GGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTACGCCTAAATCAACCCACGAAACGA
624 GG-AT---CT--GTA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
11921423 GCGTGGGGGTGCTTAGCCAGCCAGAGGGGCGAGATGCACAAGCCGGGGATCGATCCTGCTGCTAC
682 GTGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGA--CTG--GGT--
**
11921488 AACCCCCTCTGCATGCTACCGTACCCCCTTTGCATGCTACCGATCCTGCTGCCACAACCCTAAGT
741 ---CCCC-CT-C-TG----CG---------TGC-TG---CCGATCCTGCTGCCACAACCCTCGGT
* ** *
11921553 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-TAATC--AA--AACGAGC
783 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAAACGAACGGGC
11921613 --GGGC-G-GGCAC-AGCGCTG
847 GGGGGCGGCGGCACTA-CGC-G
* *
11921630 GCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
11921695 ATATTTCTGTGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
**
11921760 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * * * ** * *
11921825 TCGGGATTTTTTAAAATATTTTCGGAAGGACTTTCAGCCCCAAACATGGTAGACGTGATCGTTGT
196 TCGAGATTTTTTAAAATTTTTTC-GAAAGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
11921890 ATTTTTGTTGGCATGTACAAAAAAAATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCA
260 ATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
11921955 TTAGGAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
11922020 AATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
11922085 AAGTACCAACACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCCCCCGATTGTCGGAACCC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCGGCCCCCCCGATCGTCGGAACCC
*
11922150 CAATGCCACCGGTCAGGTTCCCTAGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATACGA
517 CAATGCCA----TCAGGTT--CTAG-G-TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGA
* * * * * *
11922215 TACCAACACATGCCCGAGCCCAGCATGGGTTGCCGCAACCCTCGGT--CTGG-TCCG-ATCTTAG
574 CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCACGGGATCTGTATCTTAG
* * * * * * *
11922276 ACTGGGAATGAACTCTGTATGCCTAGGTCAACCCACGAAACAAGTGTGGGGGCGCTCAACCGGTC
639 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCGGCC
* * * * * *
11922341 AAAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
704 AGAGGGGCGGGATGCACAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
** * * *
11922406 CTGCAACCCTCGGTCTAGTCTGACCTTTGACTGGGAATGAACTCCGTATGC
769 CCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
11922457 TTAGACTGGC
Statistics
Matches: 3842, Mismatches: 423, Indels: 347
0.83 0.09 0.08
Matches are distributed among these distances:
866 208 0.05
867 299 0.08
868 91 0.02
869 6 0.00
870 3 0.00
871 3 0.00
873 1 0.00
876 1 0.00
877 5 0.00
880 2 0.00
881 2 0.00
882 243 0.06
883 91 0.02
884 67 0.02
885 82 0.02
886 7 0.00
887 5 0.00
888 3 0.00
889 8 0.00
891 1 0.00
892 5 0.00
893 186 0.05
894 271 0.07
895 3 0.00
896 87 0.02
897 2 0.00
898 8 0.00
899 177 0.05
900 17 0.00
901 31 0.01
902 192 0.05
903 121 0.03
904 327 0.09
905 133 0.03
906 9 0.00
907 9 0.00
908 4 0.00
909 33 0.01
910 320 0.08
911 66 0.02
912 34 0.01
913 4 0.00
914 2 0.00
916 3 0.00
917 6 0.00
918 288 0.07
919 167 0.04
920 2 0.00
921 100 0.03
922 28 0.01
925 4 0.00
927 1 0.00
929 4 0.00
930 2 0.00
931 2 0.00
932 1 0.00
933 65 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (866 bp):
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
TCGAGATTTTTTAAAATTTTTTCGAAAGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
GCCATCAGGTTCTAGGTGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAACACATG
CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCACGGGATCTGTATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
TGCACAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGG
CGGGGGCGGCGGCACTACGCG
Found at i:11918676 original size:26 final size:26
Alignment explanation
Indices: 11918647--11918699 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11918637 CTGATCCGAT
11918647 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11918673 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11918699 C
1 C
11918700 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11919783 original size:4 final size:4
Alignment explanation
Indices: 11919774--11919803 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
11919764 GACAAAACGA
*
11919774 GCGG GCGG GCGG GCGG GCGG GTGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
11919804 ACTACGCCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.23, G:0.73, T:0.03
Consensus pattern (4 bp):
GCGG
Found at i:11920496 original size:25 final size:26
Alignment explanation
Indices: 11920446--11920497 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11920436 CTGGTCCGAT
11920446 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11920472 CTTAGACTGGGAATG-ACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11920497 C
1 C
11920498 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11920691 original size:8 final size:8
Alignment explanation
Indices: 11920675--11920704 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
11920665 ACCGACGAAA
11920675 CGAGCAGG
1 CGAGCAGG
*
11920683 CGGGCAGG
1 CGAGCAGG
11920691 CGAGCAGG
1 CGAGCAGG
11920699 CGAGCA
1 CGAGCA
11920705 CTATGCGACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.23, C:0.27, G:0.50, T:0.00
Consensus pattern (8 bp):
CGAGCAGG
Found at i:11921385 original size:26 final size:26
Alignment explanation
Indices: 11921349--11921401 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11921339 CCAATCCAAT
11921349 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
11921375 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
11921401 C
1 C
11921402 CTAAATCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:11921506 original size:19 final size:20
Alignment explanation
Indices: 11921478--11921527 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
11921468 GGGATCGATC
11921478 CTGC-TGCTAC-AACCCCCT
1 CTGCATGCTACGAACCCCCT
*
11921496 CTGCATGCTACCGTACCCCCT
1 CTGCATGCTA-CGAACCCCCT
*
11921517 TTGCATGCTAC
1 CTGCATGCTAC
11921528 CGATCCTGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 4 0.15
19 5 0.19
20 2 0.07
21 16 0.59
ACGTcount: A:0.16, C:0.44, G:0.14, T:0.26
Consensus pattern (20 bp):
CTGCATGCTACGAACCCCCT
Found at i:11921515 original size:21 final size:21
Alignment explanation
Indices: 11921489--11921529 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
11921479 TGCTGCTACA
11921489 ACCCCCTCTGCATGCTACCGT
1 ACCCCCTCTGCATGCTACCGT
*
11921510 ACCCCCTTTGCATGCTACCG
1 ACCCCCTCTGCATGCTACCG
11921530 ATCCTGCTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.46, G:0.15, T:0.24
Consensus pattern (21 bp):
ACCCCCTCTGCATGCTACCGT
Found at i:11924248 original size:26 final size:26
Alignment explanation
Indices: 11924219--11924268 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
11924209 CCGATCTGAT
11924219 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
11924245 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
11924269 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:11924515 original size:896 final size:891
Alignment explanation
Indices: 11922408--11924976 Score: 3449
Period size: 896 Copynumber: 2.9 Consensus size: 891
11922398 TCCTGCTGCT
* *
11922408 GCAACCCTCGGTCTAGTCTGACCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAA
1 GCAACCCTCGGTCGA-TCTGA-C-TTGACTGGGAATGAACTCCGTAAGCTTAGACTGGCAATGAA
* * * * **
11922473 CACCGTATGCCTAAGTCAACCCA-TAAAACGAGCATACGTGTGCTCAGCCGGCCAGAGTAGCGGG
63 CTCCGTATGCCTAAGTCAACCCACGAAAA-GAGCGTACGAGTGCTCAGCCGGCCAGAGGGGCGGG
* ** * *
11922537 ATGCGCAAGACGGGGATCGGTCAGGTCCCGCTCAACGTGCTGCTGATCCTGCTATCACAACCCTC
127 ATGCGCAAGACGGGGATCGGTCGGGTCCC-CTCTGCGTGCTGCCGATCCTGCTACCACAACCCTC
* *
11922602 GATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGTGG
191 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----
* * * *
11922667 GCGAGCGGGCGGGCAGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGA
252 ---A-CGGGC--G--GGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGA
*
11922732 TAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTCCCAATGCCATTTTTATGGCTT
309 TAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * *
11922797 CTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAGGACGACTCGTTTTCT
374 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
11922862 ATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTGTTAAAATTTAAAATTTTTTCAGAA
439 ATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGA--T-TT----TTTAAAATTTTTTCGGAA
**
11922927 GGAGTTTAAGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTTGGAATGCACAAAAAAATT
497 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTTGGAATGCACAAAAAAATT
* * * *
11922992 CAGCTAAAAATTTGAA-CTGTACAAGATTTTGTTACCATTTGAAAAACGTGTCCCCATTTCAGAC
562 CAGCTAAAAACTCGAAGC-GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
11923056 ACTTTAATGGCTACTGGCTGTA-AACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC
626 ACTTTAATGGCTACTGGC--AACAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
11923119 TTGAGGTTTGCTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
689 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
11923184 GTGCGCACACCCCCCCCCGTCGACCGCCCCGATCGTTGGAACTCCAATGCCGTCGGTCAGGTTCT
754 GTGCGCACA-CCCCCCCCG--G-CC-CCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT
* *
11923249 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAACACATGCCCGAGCCT
814 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAACACATGCCCGAGCCC
* ***
11923314 AGCTTGTGCTGTT
879 AGCATGTGCTACC
* *
11923327 GCAACCCT---T-G----G--TT---T--G---G---TCCG--ATCTTAGACTGGTAATGAACTC
1 GCAACCCTCGGTCGATCTGACTTGACTGGGAATGAACTCCGTAAGCTTAGACTGGCAATGAACTC
* * * * * * *
11923369 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACAGCCCAGAGGGGTGGGATGC
66 CGTATGCCTAAGTCAACCCACGAAAAGAGCGTACGAGTGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * *
11923434 ACAAGTCGGGGATCGGTCGGGTCTGCCTCTGCGTGCTGCCGATCCTGCTACCACAAACCTCAGTC
131 GCAAGACGGGGATCGGTCGGGTC-CCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTC
* * * **
11923499 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGATGAAACGAGTGGGCGG
195 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGG
*
11923564 ACGGGCACTACA-CCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
260 GCGGGCACTA-AGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
**
11923628 GTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
324 GTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
11923693 GGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
389 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* *
11923758 CAAAACTTTTTGCGGTTCGGGATTTTTTAAAATCTTTTCGGAAAGG-GTTTTGGCCCCAAAATTG
454 CAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCCCAAACTTG
* * *
11923822 GTAGACATGCTCCTTGTACTTTATTTAGG-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGT
518 GTAGACGTGATCCTTGTACTTT-TTTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGT
*
11923886 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCAAC
582 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAC
* **
11923951 AACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
647 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
11924016 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTCCCCCCGGCCC
712 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCCGGCCC
** *
11924081 CCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTTTGGCGATGCTCCGGCGATGGTGCCCC
776 CCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
** * *
11924146 GGTGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCATGTGTTACC
841 GACGAAGAAAAATACGACACCAACACATGCCCGAGCCCAGCATGTGCTACC
* *
11924197 GTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAA
1 GCAACCCTCGGT-CGATCTGA-CTT-GACTGGGAATGAACTCCGTAAGCTTAGACTGGCAATGAA
* * *
11924262 CTCCGTATGCCTAAGTCCACCCACGAAAAAAGCGTATGAGTGCTCAGCCGGCCAGAGGGGCGGGA
63 CTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTACGAGTGCTCAGCCGGCCAGAGGGGCGGGA
* ** * * *
11924327 TGCGCAAGCCGGGGATCGACCGGGTCCCCTTCTGCGTGCTGCCGATCTTGATGCCACAACCCTCG
128 TGCGCAAGACGGGGATCGGTCGGGTCCCC-TCTGCGTGCTGCCGATCCTGCTACCACAACCCTCG
* *
11924392 GTCTAGT-TCGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCAACCGACGAAACGAACGG
192 GTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGG
* *
11924456 GCGGGCGGGCACTAAGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGG
256 GCGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
* *
11924521 TGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTGGTAAATTCATAC
321 TGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
** * * *
11924586 AATCTTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGGT
386 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
11924651 TTTCAAAACCTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
451 TTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* ** *
11924716 TGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAATTAAAAACTCGAAGT
516 TGGTAGACGTGATCCTTGTACTTTTT-TTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGC
11924780 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
580 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
11924845 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTTTTGAGGTTTGATGAGGGATA
645 AC-AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
** * *
11924910 GGATGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGTACA-CCCCCCCGGC
709 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGC
11924974 CCC
774 CCC
11924977 TCGGCTCCGT
Statistics
Matches: 1462, Mismatches: 146, Indels: 108
0.85 0.09 0.06
Matches are distributed among these distances:
870 108 0.07
871 2 0.00
872 2 0.00
873 30 0.02
874 230 0.16
875 11 0.01
878 2 0.00
879 2 0.00
881 202 0.14
882 2 0.00
883 1 0.00
885 4 0.00
886 1 0.00
888 1 0.00
891 1 0.00
893 173 0.12
894 10 0.01
895 30 0.02
896 529 0.36
897 106 0.07
898 1 0.00
901 1 0.00
903 1 0.00
906 2 0.00
910 1 0.00
916 1 0.00
919 8 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
GCAACCCTCGGTCGATCTGACTTGACTGGGAATGAACTCCGTAAGCTTAGACTGGCAATGAACTC
CGTATGCCTAAGTCAACCCACGAAAAGAGCGTACGAGTGCTCAGCCGGCCAGAGGGGCGGGATGC
GCAAGACGGGGATCGGTCGGGTCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCT
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGG
CGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
TTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTACTTTTTTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCGA
TCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGA
AGAAAAATACGACACCAACACATGCCCGAGCCCAGCATGTGCTACC
Found at i:11925072 original size:26 final size:26
Alignment explanation
Indices: 11925034--11925084 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11925024 CCGGTCCGAT
*
11925034 CTTAGATTAGGAACGAACTCTGTATA
1 CTTAGACTAGGAACGAACTCTGTATA
* *
11925060 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTAGGAACGAACTCTGTAT
11925085 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCTGTATA
Found at i:11926673 original size:26 final size:26
Alignment explanation
Indices: 11926637--11926686 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
11926627 CTAGTCTGAT
11926637 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11926663 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
11926687 GGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11927573 original size:26 final size:26
Alignment explanation
Indices: 11927537--11927589 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11927527 CTGGTCTGAT
11927537 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11927563 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11927589 C
1 C
11927590 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11927870 original size:899 final size:902
Alignment explanation
Indices: 11925930--11931303 Score: 6943
Period size: 899 Copynumber: 6.0 Consensus size: 902
11925920 ACTCCATATG
* * * *
11925930 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAAGAAATGAACGGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AACGAGCGGGCGGGCGGG
* * *
11925995 CAGGCGGGCACTACGTCAGCCAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTGGTAGGT
62 CAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
11926060 GAGTTTAGGCACATCTTCTTATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAA
127 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * **
11926125 ATGGTGCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTTTATTTTTCAAAATT
192 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * * **
11926190 TTTGAAACTTTTTTCGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGGGCCAAACTT
257 TTCGAAACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
11926255 GGTATACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGT
321 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
11926320 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
386 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
11926385 AAACCTGTAAAATCTCAAATACTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGG
451 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
11926449 GGGCCAATATAAGGG-CAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCT-G-CCCC
516 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCC
* * *
11926511 CCGATCGTCAGAACCCCAATGCTGCCGGTCAAGTTCT-C--C---G----G-TGATGGTGCCCCG
581 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCG
* * * *
11926565 GGGAAGAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTA
646 GCGAAGAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* *
11926630 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAGGCCTAAG
711 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
11926695 TCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCTAGAGGGG-GGGATGCCCAAACTGGGGA
776 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * **
11926759 TCGGTCAGGTCCTCCTCTGCT-TGCTGCCGATCCTGCTACCGTAACCCTCGATCCAGTCCAAT
841 TCGGTCGGGTCCCCCTCTG-TGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCAGTCTGAT
* * * *
11926821 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAATGAGCGGGCGGGCGGGC-GA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAG-
* *
11926885 GCAGGCACTACGTCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
65 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
11926950 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
11927015 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
**
11927080 GAAACTTTTTACAATTCAGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
260 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
** *
11927145 GACGTGATCCTTGTATTTTTGTTGGCATGCATTAAAAAATTCAGTTAAAAACTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
11927210 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
11927275 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
11927340 CAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGA
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGA
* * * * *
11927404 TCGTTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGGTCCGATGATGGTGCCTCGGGGA
585 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGGCGA
* * * *
11927469 AGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCT
650 AGAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
11927534 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
715 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
11927599 CCCATGAAACGAGCATGCGGGCGCTCTGTCGGCTAGA-GGG-GGGATGCCCAAGCCGGGGATCGG
780 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
** * * * *
11927662 TTAGGTCCTCCTCTGCT-TACTGCCGATCCTGCTACCATAACCCTCGATCCAGTCTGAT
845 TCGGGTCCCCCTCTG-TGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCAGTCTGAT
* *
11927720 CTTAGGCTGGGACTGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
*
11927785 CGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
11927850 TTAGGCACATATTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
11927915 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG
* *
11927980 AAACTTTTTACAGTTCAGGATTTTTTAAACTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
261 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
11928045 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAGAACTCGAAGTGTACAAG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
11928110 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
11928175 TGTAAAATCTCAAATGCTCTTTAA-GGGGTGTCAGTTCTCGAGGTTTGATGAGGGATAGGGGACC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
11928239 TATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTCCGCACACCCCTCCCCGGCCCCCCC
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CC-CCCTGGCCCCCCC
* * * * *
11928304 GTTC-ACGGAAACCCCAATGCTGCCGGTCAGGTTCTCCGGCGATACTCCGATGATGGTGCCCCGA
583 GATCGTCGG-AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGG
* * * *
11928368 CGAAGAAAAAAATGACACCAGCACATGCCTGAGCCCAGCTTGTGCTGCCGCAACCCTCGGTCCGG
647 CGAAGAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
*
11928433 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
712 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * ** * *
11928498 CAACCCATGAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGCCTTGATGCGCAAGTCAGGGAT
777 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * * ** * ** **
11928563 CGACCGGGTCCCCCTCTGTGTGCTGTCGATCCTACTTCCACAACCCTCGGTCTGGTCCAAT
842 CGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCAGTCTGAT
*
11928624 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGTAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC------G--GG
11928689 CGGGCGGGTGGGAAGGCGGGCGGGCGGGCAGGCGGGCATTACGTCGGCCAGAGAGACGGGATGCG
58 CGGGC--------A--------GGCGGGCA------C--TACGTCGGCCAGAGAGACGGGATGCG
* * *
11928754 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGCGCTAATG
99 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* **
11928819 CCATTTTTACGGCTTGTAAATTCATACAATGGTCTTTTAAGCCTTCACGTGAAGTTTCATGGCAA
164 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
11928884 GACGGCTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTC-GAGA-TTTTTAAAATT
229 GACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCAG-GATTTTTTAAAATT
* * * * * *
11928947 TTTTGGAATGAGTTTTGGCCCCAAGCTTGGTAGACGTGATCCCTGTATTTTTGTGGGCATGCATA
293 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
11929012 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGTCCATTTGAAAAAAGTGTCTCCAT
358 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
11929077 TTCAGACAATTTAATGGCTACGGGCAGCAAACTTGTAAAATTTGAAATGCTCTTTAAGGGGGTGT
423 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
11929142 GAGTTCTCGAGGTTCGATGAGGGATATGGGGCCAATATAA-GGCCAAAGTACCAGCACCAATCGC
488 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGC
* ** * * * *
11929206 ACATCATGTGCGCACACCCCCCGGCCCCATCAATCGTCGGAACCCCATTGCTGCTGGTCAGGTTC
552 ACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * ** * *
11929271 TCTGACAATGGTCCGACGATGGAT-CCCCAGCGAAGAAAAATGCGACGCCAGCACATGCCCAAGC
617 TCCGGCGATGCTCCGATGATGG-TGCCCCGGCGAAGAAAAATATGACACCAGCACATGCCCGAGC
* * * * *
11929335 CCAGCCTGTGCTGCCACAACCCTCGGTC-AGTCCGATCTTAGACTGGGACTGAACTCCATATGCT
681 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
11929399 TAGACTAGGAATGAACTCTGTATGCCTAAGTGAACCCATGAAACAAGCGTGCGGGCGCTCAGCCG
746 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
11929464 GCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTATCGATCCTA
811 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTG
* * *
11929529 CTACCGTAACCCTCCATTCAGTTTGAT
876 CTACCGTAACCCTCGATCCAGTCTGAT
* * * * *
11929556 CTTAGACTGGGAATGAAGTCCGTATGCCTAAGGCAACAGATGAAACGA----GCGGGTGGGCA--
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * * * * * * *
11929615 --GGCACTATGCCGACTAGAGAGATGGGATGCGCAAGCCGTGGATCGATTGGGTGGTTGGTGTGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
11929678 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATCCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
11929743 TCCTTTAAGCCTTCACATGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG
** * *
11929808 AAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * ** *
11929873 TACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAG-TAAAAAACTCCTAGTCTACA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACA
11929937 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
11930002 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
11930067 CCAATATACGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCCGGCACCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT--GGCCCCCC
* * * * **
11930132 CGATCGCCGGAACACCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCCCGG
582 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGG
* * * *
11930197 TGAAG-AAAA-ATGCAGGACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAA-CC-C--TC-
647 CGAAGAAAAATATG-A-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* *
11930255 -G---G-TC-----C---G---G---TCCG-AT-CTTAGACTAGGAATGAACTCTGTATGCCTAA
710 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * * **
11930299 GTCAACCAACGGAACGAGTGTGCGGGTGCTCAACCGACCAGAGGGGTGGGATAAGCAAGCCGGGG
775 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * ** * * *
11930364 ATCGGCCGGGTCCCCCTCTGTGTGCTGTTGATCC-GACTGTCGCAACCCTCGGT-CTGATCTGAT
840 ATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTG-CTACCGTAACCCTCGATCCAG-TCTGAT
** * *
11930427 CTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGCGGGGGC-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--GGGCA
* * ** *
11930491 GGCGGGCACTACGCCGGCTAGAGAGACGGGATTTGCAAGTCGTGGATCGATAGGGTGGTAGGTGG
64 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
11930556 GTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGAAAATTCATGCAAT
129 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
11930621 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * *
11930686 CAAAACTTTTTGCTGTTC-GAGATTTTTTAAAATTTTTCAGGAAGGAGTTTTGGCCCCAAACTTG
259 CGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTC-GGAAGGAGTTTTGGCCCCAAACTTG
*
11930750 GTAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
322 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
11930815 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
11930880 AACCTGTAAAATGTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * *
11930945 GGCCAACATAAGGGTCAAGTACCAGCACCCATCACACATTATGTGTGCACATCCCCCTGGCCCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGGCCCCC
** ** * * * * *
11931010 CCGATCACCAAAACCCCAATGCCGCTGATCAGGTTCTTCGGTGATGCTCCGGTGATGGTGCCCCG
581 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCG
* * ** * * * ** *
11931075 ACAAAGAAAAATGCGGCACTAGCACATGCCTGAGCCCAGCATGTGCTATCGTAACCCTCGGTCTG
646 GCGAAGAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* *
11931140 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAG
711 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
11931205 TCAACCCACGAAACGAGCCGCAGCGGGCGGCTCAGCCAGCCAGAGGGGAAGGGATGCGCAAG-CT
776 TCAACCCATGAAACGAG-CG-TGCGGGC-GCTCAGCCGGCCAGAGGGG-CGGGATGCGCAAGCCG
* * *
11931269 GGGATCGGT-GGGT-CCTCTCTATGAGCTGTCGATCC
837 GGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCC
11931304 CGATCGGTGC
Statistics
Matches: 3952, Mismatches: 412, Indels: 223
0.86 0.09 0.05
Matches are distributed among these distances:
870 2 0.00
871 173 0.04
872 2 0.00
873 3 0.00
875 5 0.00
876 1 0.00
877 4 0.00
879 100 0.03
880 456 0.12
881 9 0.00
882 1 0.00
883 2 0.00
885 1 0.00
886 181 0.05
887 315 0.08
888 3 0.00
889 40 0.01
890 1 0.00
891 38 0.01
892 185 0.05
893 11 0.00
894 254 0.06
895 13 0.00
896 95 0.02
897 1 0.00
898 47 0.01
899 570 0.14
900 182 0.05
901 4 0.00
902 220 0.06
903 7 0.00
904 112 0.03
905 44 0.01
906 19 0.00
907 9 0.00
908 25 0.01
909 10 0.00
910 1 0.00
912 8 0.00
920 7 0.00
922 1 0.00
928 10 0.00
932 209 0.05
933 110 0.03
934 7 0.00
935 187 0.05
936 267 0.07
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCG
AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGAT
CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGGCGAA
GAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
CGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCAGTCTGAT
Found at i:11928468 original size:26 final size:26
Alignment explanation
Indices: 11928439--11928491 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11928429 CCGGTCCGAT
11928439 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11928465 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11928491 C
1 C
11928492 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11928693 original size:16 final size:16
Alignment explanation
Indices: 11928672--11928725 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
11928662 GACGAAACGA
*
11928672 GCGGGCGGGTGGGTAG
1 GCGGGCGGGTGGGAAG
11928688 GCGGGCGGGTGGGAAG
1 GCGGGCGGGTGGGAAG
* *
11928704 GCGGGCGGGCGGGCAG
1 GCGGGCGGGTGGGAAG
11928720 GCGGGC
1 GCGGGC
11928726 ATTACGTCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.07, C:0.19, G:0.69, T:0.06
Consensus pattern (16 bp):
GCGGGCGGGTGGGAAG
Found at i:11931176 original size:26 final size:26
Alignment explanation
Indices: 11931147--11931199 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11931137 CTGGTCCGAT
11931147 CTTAGACTAG-GAATGAACTCCGTATG
1 CTTAGACT-GCGAATGAACTCCGTATG
11931173 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
11931199 C
1 C
11931200 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:11933380 original size:26 final size:26
Alignment explanation
Indices: 11933351--11933403 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11933341 CCGATCTGCT
*
11933351 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11933377 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11933403 C
1 C
11933404 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11934281 original size:26 final size:26
Alignment explanation
Indices: 11934245--11934297 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11934235 CTGGTCTGAT
11934245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11934271 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11934297 C
1 C
11934298 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11935089 original size:887 final size:887
Alignment explanation
Indices: 11932540--11938695 Score: 7707
Period size: 892 Copynumber: 6.9 Consensus size: 887
11932530 TGCATCAGCG
* * * *
11932540 CCAGA-GGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCTGCCGATCTTGCT-GT
1 CCAGAGGGGCGGGATGCGCAAGCCAGGGATCGCTCGGGTCCC-C-CT-CTG-CG----TGCTACT
* * *
11932603 CGCAACCCTCAGCCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CATACCGAC
58 CGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA-ACCGAC
* * *
11932667 GAACCAGCGGGCGGGCGAGCGCGGCGGGGCACTAC-CTGACGGCAGAGAGACGGGATGC-CAAGC
122 GAA--A-CGAGCGGGCGGGCG-GGC-GGGCAATACGC-GAC--CAGAGAGACGGGATGCGCAAGC
* * *
11932730 CGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
179 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
11932795 TTTATGGCTTGGAAATTCATACAATGGTCCCTTAAGCC-TCACGTGAAGTTTTAATGGCAAGAAC
244 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAG-AC
* *
11932859 GTACTCGTTTTCTATTTTTCACGATTTTTTGAAAATTTTTAC-GTTCGAGTATTTTTTAAAAATT
307 G-ACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTC-AGGATTTTTT-AAAATT
* *
11932923 TTTTCGGAAGGAGTTTT-TCACCCAAACCTTGGTATGACGTGATCCTTGTACTTTTGTTGGCATT
368 TTTTCGGAAGGAGTTTTGGC-CCCAAA-CTTGGTA-GACGTGATCCTTGTATTTTTGTTGGCA-T
*
11932987 GCACAAAAAAATTCCAGCTAAAAACTCGAAGGTGTACACGATTTTGTGACGCATTTGAAAAAAAG
429 GCACAAAAAAATT-CAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGAC-CATTTG-AAAAAAG
*
11933052 TATCCCCATTTCACGAGCACTTTAATGGCTACTGGCAAGCAAACCTGTAAAAATCTCAAATGCTC
490 TGTCCCCATTTCA-GA-CACTTTAATGGCTACTGGC-AGCAAACCTGT-AAAATCTCAAATGCTC
*
11933117 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
551 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * * * * * *
11933182 AGCACCCAACACAAACATCATGTGCGCACACCCCCCCGACCCCCCAATCATCAGAACCCCAACGT
616 AGCACCCATCGC--ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
** ** *
11933247 CACCGGTCAGGTTCT-C--CGA--------CGATGGTGCCCCGACAAAGAAAAATGCGGCACCAG
679 CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAA
* * * * * * * * *
11933301 CACATTCTCGAGCCCAGCATGTGCTGCCGCAACCCTTGATCCGATCTGCTCTTAGACTGGGATTG
744 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
* *
11933366 AACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGC
809 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
*
11933431 GGGTGCTCAGCCG-
874 GGGTGCTCAACCGA
* * * * *
11933444 GCAAAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGGGCTGCCGATCCTAC
1 CCAGAGGGGCGGGATGCGCAAGCCAGGGATCGCTCGGGTCCCCCTCTGC--G-T---G---CTAC
* * * *
11933509 TATCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCG
57 --TCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * *
11933574 ACGAAACGAGTGGGCAGGCAGTCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTCG
120 ACGAAACGAGCGGGCGGGCGGGCGGGCAATACGCGA-CCAGAGAGACGGGATGCGCAAGCCGTGG
* *
11933639 ATCGATAGGGT-GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCAATTTTTAT
184 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
11933703 GGCTTGTAAATTTATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
249 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
11933768 TTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTC-GAGATTTTTTAAAATTTTTTCTGAAG
314 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAG
* *
11933832 GAGTTCTGGCCCTAAAC-T-GTAGACGTGATCCTTGTATATTTT-TTGGCATGCACAAAAAAATT
378 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATT
* * *
11933894 CAGCTACAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCAATTCAGACA
442 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
11933958 CTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTC
507 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
11934023 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGT
572 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
11934088 GCGCACACCCCCCCGG-CCCCCCGATCGTCGAAACCCCAATGCTGCCGGTCAGGTTCTCCGATGA
637 GCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * * * *
11934152 TGCTCCAGCGATGGTGCCTCGGTGAAGAAAAATGTGACAGCAACACATGCCCGAGCCCAGCATGT
701 TGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGT
* *
11934217 GCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
766 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* *
11934282 AATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAATCGA
831 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGA
* * * * * * *
11934339 CCAGAGGGGTGGGATGTGTAAGCCGGGGATCGC-CTGGATCTCCCTCTACGTGCTACT-GCAACC
1 CCAGAGGGGCGGGATGCGCAAGCCAGGGATCGCTC-GGGTCCCCCTCTGCGTGCTACTCGCAACC
* * * *
11934402 CTCAGTCTGGTCCAATTTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACCGACGAAAAGAG
65 CTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * *
11934467 CGGGCAGGCGGGCAGGCAATACGTCGACCAGAGAGACGGGATGCGCGAGCCTTGGATCGATAGGG
130 CGGGCGGGCGGGCGGGCAATACG-CGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
11934532 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
194 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
11934597 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
259 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
11934662 TGATGATTTTTGAAACTTTTTACGATTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCC
324 TCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
11934727 CCAAACTAGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
389 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
11934792 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTA
454 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
11934857 CAGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAA
519 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* ** *
11934922 GGGATAGGGAGCCAATATAACAGCCAATTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
584 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * *
11934987 CGGCCCCCCCGATCATCGGAACCCAAATGCCGTCGGTCAGGTCCTCCGACGATGCCCCGACGATG
649 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATG
* * * * *
11935052 GTGCCCCGGTGAAGAAAAATGTGGCACCAATACATGCCCGAGCTCAGCATGTGCTGCCGTAACCC
714 GTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * *
11935117 TCGATTTGGTCCGATCTTGGACTGGGATTGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
779 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
** * * * * *
11935182 TAACTAAGTCAACTCATGAAACGAGCGTGCGGGTGGTTAACCGG
844 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGA
* * *
11935226 CCAGAGGGGCGGGATGCGCAAGCCAGGGATCAGC-CGGGTCCCCCTCTGTGTACT-GTCGCAACC
1 CCAGAGGGGCGGGATGCGCAAGCCAGGGATC-GCTCGGGTCCCCCTCTGCGTGCTACTCGCAACC
* *
11935289 CTCAGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCGACGAAACGA
65 CTCAGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * ** * *
11935353 GCGGG-GGGCGGTCGGGCAATACACCGGCCAGAGAGGCCAGATGCGCAAGCCATGAATCGATAGG
129 GCGGGCGGGCGGGCGGGCAATAC-GCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
11935417 GT-GTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
193 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
*
11935481 ATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
258 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
11935546 TTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA-TTTCTTG
323 TTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTT-TGG
* * * *
11935610 CCCTAAACTTGGTACACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
387 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
11935675 CTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTTAGACACTTTAATGGC
452 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
11935739 TACTGGCAGCAAATCGGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
517 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
** *
11935804 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCACACACCC
582 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--C
* * * * *
11935869 CCCCCGGCCCCCCCGATCGTGGGAATCCCAATGCCGCCGGCCAAGTTCTCCGACGATGCTCCGGC
645 CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGC
* * * * *
11935934 AATGGTGCCTCGATAAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTGCA
710 GATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
11935999 ACCCTCGGTCCGGTCCGATCTT--A----G-AT----T--G---G----GAC------TGAACTC
775 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* ** *
11936038 TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGG
840 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGA
* * * * * * * *
11936086 CCAAAAGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCT-GTGGCAACCC
1 CCAGAGGGGCGGGATGCGCAAGCCAGGGATCGCTCGGGTCCCCCTCTGCGTGCTACTCGCAACCC
* * * *
11936150 TCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA--
66 TCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * *
11936213 --GCGGGCGGGCGGGCACTACACTGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGATGGGGT
131 GGGCGGGCGGGCGGGCAATACGC-GACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
11936276 GGTAGGTGGGTTTAGGCACATATTCATATTTATGGATGCCAATGCCATTTTTATGGCTTGTAAAT
195 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
11936341 TCATACAATGGTCCCTTAAGCCTTCCCGTGAAGTTTAATGGCAAGACAACTCGTTTTCTATATTT
260 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** *
11936406 CACGATTTTT-AAACTTTTTGTGGTT-AGGTATTTTTTTAAAATTTTTTGGGAAGGAGTTTT-GC
325 CACGATTTTTGAAACTTTTTACGGTTCAGG-A-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
11936468 CCCAAACCTGGTAGACGTGATCCTTGTACTTTTT-TTAGCATGCACAAAAAAATTCAGCTAAAAA
388 CCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
11936532 ATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
452 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
11936597 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCTGGAGGTATGAT
517 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * * *
11936662 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCAATGGAACATCATGTGTGCACACCC
582 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * *
11936727 CCCAGG-CCCCCCGATTGCCGGAACCCCAATGTCATCGGTCAGGTTCT-CGACGATGCTCCGGCA
647 CCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCG
* * * * * *
11936790 ATGGTGCTCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTACCGTAA
711 ATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA
11936855 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
776 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * ** * **
11936920 GTATGCCTAAGTCAACCCACGAAACGAGTGTACAAGCGCTCGGCCGA
841 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGA
* * * * * * * *
11936967 CCAGAGGGGCGGGATGTGCAAGACAGGGATCGGTGGGGGCCTCTTCTATGTGCTGCCGATCCTTC
1 CCAGAGGGGCGGGATGCGCAAGCCAGGGATCGCTCGGGTCC-C--C---CT-CTG-CG-TGCTAC
** * *
11937032 TGCTGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACT-TGTATGCCTAAGCCAACCG
57 T-C-GCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
11937096 ACGAAACGAGCGGGC--G-GGG-TGGCACTATGCTGGCCAGAGAGACGGGATGCAG-AAGCAGTG
120 ACGAAACGAGCGGGCGGGCGGGCGGGCAATACGC-GACCAGAGAGACGGGATGC-GCAAGCCGTG
*
11937156 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
183 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
*
11937221 TGACTTGTAAATTCATACAATGGTCCCTT-AGACCTTCACGTGAAGTTTCATGGCAAGACGACTC
248 TGGCTTGTAAATTCATACAATGGTCCCTTAAG-CCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
11937285 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTAGGGTTC-GAGATTTTTTAAAATTTTTTCGGA
312 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGA
* * * *
11937349 AGTAGTTTTGACCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAT
376 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
11937413 TCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
441 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
11937478 ACTTTAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCT
506 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
11937543 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
571 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
11937608 TGCGCACACCCCTCGGCCCCCCCGATCGCCGGAACCGCAATGCCGTCGGTCAGGTTCTCCGACGA
636 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * *
11937673 TGCTCCGGTGATGGT-CACC-AGCGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATG
701 TGCTCCGGCGATGGTGCCCCGA-TGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* * * *
11937736 TGCTGTCGCAACCCTCTGTGC-GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
765 TGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* *
11937800 TGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAACC-A
829 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGA
* * * ** * *
11937858 GCCAGAAGGGCAGGATGCGAAAGTTAGGGATCGGC-CAGGTCCCCCTCTGCTTGCTGCCAATCTT
1 -CCAGAGGGGCGGGATGCGCAAGCCAGGGATC-GCTCGGGTCCCCCTCTGC--G-TG-CTA-C-T
* *
11937922 GCTGCCATAACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
58 -C-G-C--AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
11937987 CGACGAAATGAGCGGGTGGGCGGGTGGGCGAGCACTACGCTGGCCAGAGAGACAGGATGCGCAAG
118 CGACGAAACGAGCGGGCGGGCGGGCGGGC-A--A-TACGC-GACCAGAGAGACGGGATGCGCAAG
* *
11938052 CCGTGGCTCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
178 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * *
11938117 TTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCATAACCTGAAGTTTCATGGCAAGACG
243 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * *
11938182 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAATATTTTTTC
308 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
* * * * *
11938247 GAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCAAAAAAA
373 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
11938312 AATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
438 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
11938377 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGGTGAG
503 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAG
* * * * * *
11938442 TTCTGGAGGTATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCAATGGAACAT
567 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * * *
11938507 CATGTGTGCACACCCCCCAGCCCCCCCGATTGCCGGAACCACAACGTCATCGGTCAGGTTCTCCG
632 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * * *
11938572 ACGATGCTCCGGCAATGGTGCTCCGACGAAGAAAAATGCGGCACCAGCACATGGCCGAGCCCAGG
697 ACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
* * *
11938637 AAGTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
762 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
11938696 CTAAGCCAAC
Statistics
Matches: 4606, Mismatches: 505, Indels: 282
0.85 0.09 0.05
Matches are distributed among these distances:
855 91 0.02
856 42 0.01
857 151 0.03
858 303 0.07
859 4 0.00
860 157 0.03
861 1 0.00
862 2 0.00
866 4 0.00
868 1 0.00
870 1 0.00
871 1 0.00
873 1 0.00
875 4 0.00
879 1 0.00
880 1 0.00
881 79 0.02
882 1 0.00
883 166 0.04
884 348 0.08
885 364 0.08
886 294 0.06
887 470 0.10
888 9 0.00
889 16 0.00
890 13 0.00
891 14 0.00
892 701 0.15
893 157 0.03
894 175 0.04
895 59 0.01
896 12 0.00
897 4 0.00
898 2 0.00
899 27 0.01
900 25 0.01
901 281 0.06
902 127 0.03
903 255 0.06
904 131 0.03
905 38 0.01
906 11 0.00
907 1 0.00
909 59 0.01
910 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (887 bp):
CCAGAGGGGCGGGATGCGCAAGCCAGGGATCGCTCGGGTCCCCCTCTGCGTGCTACTCGCAACCC
TCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
GGGCGGGCGGGCGGGCAATACGCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
ACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGT
GCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGA
Found at i:11936902 original size:26 final size:26
Alignment explanation
Indices: 11936873--11936925 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11936863 CTGGTCCGAT
11936873 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11936899 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11936925 C
1 C
11936926 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11937804 original size:26 final size:26
Alignment explanation
Indices: 11937765--11937817 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11937755 GCGGTCTGAT
11937765 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11937791 CTTAGACT-GTGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
11937817 C
1 C
11937818 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11939311 original size:719 final size:719
Alignment explanation
Indices: 11937929--11939413 Score: 2591
Period size: 719 Copynumber: 2.1 Consensus size: 719
11937919 CTTGCTGCCA
*
11937929 TAACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
11937994 ATGAGCGGGTGGGCGGGTGGGCGAGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTGGC
66 ATGAGCGGGTGGGCGGGTGGGCGAGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTGGC
11938059 TCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
11938124 GCTTGTAAATTCATACAATGGTACCTTAAGCCATAACCTGAAGTTTCATGGCAAGACGACTCGTT
196 GCTTGTAAATTCATACAATGGTACCTTAAGCCATAACCTGAAGTTTCATGGCAAGACGACTCGTT
11938189 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAATATTTTTTCGAAAGGA
261 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAATATTTTTTCGAAAGGA
11938254 TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCAAAAAAAAATTCAG
326 TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCAAAAAAAAATTCAG
11938319 CTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
391 CTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
11938384 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGGTGAGTTCTGGA
456 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGGAGAGTTCTCGA
* * *
11938449 GGTATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCAATGGAACATCATGTGT
521 GGTATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGAACATCATGTGC
*
11938514 GCACACCCCCCAGCCCCCCCGATTGCCGGAACCACAACGTCATCGGTCAGGTTCTCCGACGATGC
586 GCACACCCCCCAGCCCCCCCGATTGCCGGAACCACAACGTCACCGGTCAGGTTCTCCGACGATGC
* * * *
11938579 TCCGGCAATGGTGCTCCGACGAAGAAAAATGCGGCACCAGCACATGGCCGAGCCCAGGAAGTGCT
651 TCCGGCAATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCT
11938644 ACCG
716 ACCG
*
11938648 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
1 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
11938713 ATGAGCGGGTGGGCGGGTGGGCGAGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGC
66 ATGAGCGGGTGGGCGGGTGGGCGAGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTGGC
11938778 TCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
11938843 GCTTGTAAATTCATACAATGGTACCTTAAGCCATAACCTGAAGTTTCATGGCAAGACGACTCGTT
196 GCTTGTAAATTCATACAATGGTACCTTAAGCCATAACCTGAAGTTTCATGGCAAGACGACTCGTT
11938908 TTCTATTTTTCACGATTTTTCAAAACTTTTTACGGTTCGGGATTTTTTAATATTTTTTCGAAAGG
261 TTCTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAATATTTTTTCGAAAGG
11938973 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCAAAAAAAAATTCA
325 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCAAAAAAAAATTCA
*
11939038 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
390 GCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
11939103 TTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGAGAGTTCTCG
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGGAGAGTTCTCG
* * *
11939167 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTG
520 AGGTATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGAACATCATGTG
* * * * * * **
11939232 CGTACTCCCCCC-GACCCCTCCG-TTCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGA
585 CGCACACCCCCCAG-CCCCCCCGATT-GCCGGAACCACAACGTCACCGGTCAGGTTCTCCGACGA
* * *
11939295 TGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACTAGCACATGCCCGAGCCCAGCATGT
648 TGCTCCGGCAATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGT
*
11939360 GCTGCCG
713 GCTACCG
* * * * *
11939367 CAACCCTCGGTCCGGTCCGATCTTCGA-TTGGAATGAACTCCATATGC
1 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
11939414 TTAGATTGGG
Statistics
Matches: 727, Mismatches: 36, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
718 21 0.03
719 482 0.66
720 224 0.31
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (719 bp):
TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ATGAGCGGGTGGGCGGGTGGGCGAGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTGGC
TCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTACCTTAAGCCATAACCTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAATATTTTTTCGAAAGGA
TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCAAAAAAAAATTCAG
CTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGGAGAGTTCTCGA
GGTATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGAACATCATGTGC
GCACACCCCCCAGCCCCCCCGATTGCCGGAACCACAACGTCACCGGTCAGGTTCTCCGACGATGC
TCCGGCAATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCT
ACCG
Found at i:11940316 original size:26 final size:26
Alignment explanation
Indices: 11940287--11940339 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11940277 CTGATCCGAT
11940287 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11940313 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11940339 C
1 C
11940340 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11940843 original size:904 final size:900
Alignment explanation
Indices: 11938640--11958841 Score: 17839
Period size: 899 Copynumber: 22.5 Consensus size: 900
11938630 GCCCAGGAAG
* * * *
11938640 TGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * *
11938705 CTGACGAAATGAGCGGGTGGGCGGGTGGGCGAGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGA--GGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
11938770 GCCGTGGCTCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * *
11938835 TTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCATAACCTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
11938900 GACTCGTTTTCTATTTTTCACGATTTTTCAAAACTTTTTACGGTTCGGGATTTTTTAATATTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTT-GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * * * *
11938965 TCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCAAAAA
323 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
11939030 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
11939095 CAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
11939160 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
11939225 TCATGTGCGTAC-TCCCCCCGACCCCTCCGTTCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTC
583 TCATGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * * *
11939289 CGGTGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACTAGCACATGCCCGAGCCCA
647 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
11939354 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTCGA-TTGGAATGAACTCCATATGCTTAG
712 GCATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
11939418 ATTGGGAATGAACTCCGTATGCC-AAGTCAACGCACGAAACGAGCGTGTGGGCGCTCAGCCGACC
776 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * ** * * * * * * *
11939482 GGAGGGGCGGGATGTGCAAGATGGGGATCGGTCGGGGCCTCCTCTACTTGCTTCTGATCC
841 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
11939542 TTCTGCCTCAACCTTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
11939607 CCGATGAAA-TA-AGCAGGCGGGCGAGCGGGCACTA-GTCGGCCAGAGAGACGGGATGCGCAAGC
66 CCGACGAAACGAGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * **
11939669 CGTGGATCGATCGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTACATGCCAATGATATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
*
11939734 TTTA-GCGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACG
196 TTTATG-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * *
11939798 ACTTGTTTTTTATTTTTTATGATTTTTGAAACTTTTTGCGGTTAGAGATTTTTTAAAATTTTTT-
260 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* ** *
11939862 TGAAAAACGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
325 GGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
11939927 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
11939992 GGACACTTTAATGGCTACTGGCAGCAAACCTGTAACATCTCAAATTCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
11940057 TTCTCGAGGTTTGATGAGGAATAGGGGGCTAACAAAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
11940122 GATGTGCGCACACCCCCCCTGGCACCTCCGATCACC-GAAGCCCTAAT-CCTGCCGGTCAGGTTC
584 CATGTGCGCACACCCCCCC-GGC-CCCCCGATCGCCGGAA-CCCCAATGCC-GCCGGTCAGGTTC
* * **
11940185 TCCGACGATGCTCTGGCGATGGTGCCCC-AGCGAAGAAAAATATGGCACCAGCACATGCCCGAGC
645 TCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* ** * * * *
11940249 CCAACATGTGCTACCAAAAACCATCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
709 CCAGCATGTGCT-CC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * ** *
11940314 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAAGAGCATGCGGGCACCCAGCC
772 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * ** * * *
11940379 GGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTTGGGTCCCCCTCCGTGTGCTGCCAATCC
837 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
11940443 -GCCTGGCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCA
1 TG-CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
11940507 ACCGACGAAACAAGGGGCAGGCGGGCGGGAGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAA
65 ACCGACGAAACGA-GGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
11940572 GCCGTGGATCGATAGGGTGGTACGCGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC-
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
*
11940636 TTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * **
11940701 GACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCATTTCGGGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* **
11940766 CGGAAGGAGCTTTGGCAGCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
11940831 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
11940896 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
11940961 TTCTCGATGTTTGATCAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
11941026 CATGTGCGCACACCCCCCTGGCCCCTCCGATCGTCGGAACCCCAGTGCCACCGATCAGGTTCTCC
584 CATGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * *
11941091 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAACACATGCCCGAGCCTAG
648 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
11941156 CATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTGAGACTGGGAATGAACTCCGTATGCTTAGA
713 CATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* ** * * *
11941221 CTGGGAATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAACGTGCGGGTGCTCAACTGGCCA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * ** * * * * * *
11941286 GAGGGGCAGTATGCGCAAGTTGGGGATCAGCCAGGTCCCTCTCTGCATGCTGTCAATCC
842 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
11941345 TGTTGCC-CGAACCCTCGGTTCAGTCTGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGC-AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
11941409 ACCAACGAAACGAGCAGGCAGGCGGGCGGCCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCA
65 ACCGACGAAACGAG--GGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
11941474 AGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCC
128 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
*
11941539 ATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
193 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
11941604 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGGTCAGGATTTTTTAAAATTTTT
258 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * *
11941669 GCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAA
323 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
11941734 ACAACTCAGCTAAACACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
11941799 CAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
11941864 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
11941929 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATC-CCTAGAACCCCAATGCCACTGGTCAAGTTCT
583 TCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCC-GGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * *
11941992 CCGACGATGCTTCGACGATGGTGCCCTGGCGAAGAAAAATGCGACACCAACACATGCCTGAGCCC
646 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
11942057 AGCGTGTGCTGCCGCAATCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTT-
711 AGCATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * **
11942121 GATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACGAGCGTTTGGGTGCTCAGCCGGC
775 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGC
* * *
11942186 CAGAGGGGCAGGATGCGTAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
840 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * ** * **
11942247 TGCTTTCACAACATTCAGTCCGGTCTGATCTTAGACTGGGAACAAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
11942312 ACGACGAAACGAACCGGCGGGCGGG-GGGCGGCCACTACGTCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACG-A-GGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
11942376 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * *
11942441 TTTTTATGGCTTGTAAATTCATGCAATAGTCCCTTAAGCATTCACGTGATGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* **
11942506 GACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* **
11942571 CGGAAGGAGTTTTGGCCCCAAACATGGTAGACACGATCCTTGTATTTTTGTTGGCATGCACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
11942636 AAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTAACCATTCGACAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
11942701 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
11942766 TTCTCGATGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACACATCACACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * *
11942831 TATGTGCGCACA-CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCAGTCAGGTTCT--
584 CATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * ** ** *
11942893 --C--TG----G-TGATGGTGCCCCGATGAAGAAAAATACGAAACCAATACATGCTCGAGCCCAG
648 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
11942949 CATGTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
713 CATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
11943014 TTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTGCTCAGTCGGCCA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * * *
11943079 GAGGGGTGGGATGCGTAAGCCGGGGATCGGCCGGGCCCCCCTCTGCGTGCTGCCAATCC
842 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
11943138 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATAG-CTAAGCCA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT-GCCTAAGCCA
* * * *
11943202 ACCGACGAAAC----G-A-GTGGGCGGGCGGGTACTACGCTGGCCAGAGAGACGGGATGCACAAG
65 ACCGACGAAACGAGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
11943261 CCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGTACATCTTCAGATTTC-AGCGTGCCAATGCCA
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CGTGCCAATGCCA
* * *
11943325 TTTTTATGGCATCTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** *
11943390 GACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * *
11943455 TGGAAAGAGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATTCACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
11943520 AAATTCAGCTAAAAACTCGAAGAGAACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTT
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
11943585 TGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
11943650 TTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
11943715 CATGTGCGCGCA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCG
584 CATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * ** * * * *
11943779 GCGATGCCCCGGCGATGGTGCCCCGGTGGAGAAAAATGCGGCACCAACAAATGCCCGAGCCTAGC
649 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * * *
11943844 ATGTGCTGTCGTAACCCTCGGTCCTGTTCGATTTTAGACTGGGAATGAACTCCGTACGCTTAGAC
714 ATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * *
11943909 TGGGAATGAACTCCGTATGCCTAAGTCAACCCCCAAAACGAGCGTGCGGGTGCTCAGTCGACTAA
778 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * *
11943974 AGGGGCGGGATGTGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCC
843 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
** ** * *
11944032 TGCTGCCGCAACCCTCAATCTAGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
11944097 CCGACGAAACGA--GCA----GGCGGGCGGGCACTACGCCGGGCAGAGAGACGGGATGCGCAAGC
66 CCGACGAAACGAGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
11944156 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTACGTGCCAACGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
11944221 TTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGCAGTTTCATGGCAAGACGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
11944286 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTCAAAATTTTTTC
261 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTC
* ** * *
11944351 AGAAGGAGTTTTGGCAACAAACTTGCTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
11944416 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCA
390 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
11944481 GACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
455 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
11944546 TCTTGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
520 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
11944611 ATGTGCGCACA-CCCCCCGACCCCCCTGATCGCCGGAACCCCAATGCCGCCGGTCAGG-T-T---
585 ATGTGCGCACACCCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * *
11944670 -C----C-CCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAACACATGCCTGAGCCCAGC
649 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
*
11944729 ATGTGCTGCCGCAA----C---CC--T-CGA---T---CT--G---G---TCC-AAT-CTTAGAC
714 ATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * *
11944768 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGCGCGGGTTCTCAGTCGACCAG
778 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * *
11944833 AGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCCATCC
843 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * **
11944891 TACTGCCGCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATACACCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
11944956 CCGACGAAACGAGCGGGCGGGCAGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGA--GGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
11945021 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
11945086 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* **
11945151 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
** *
11945216 CTTAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAGTTGGCATGCAC-AAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
11945280 ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
11945344 AGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
11945409 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACACACCGCAAAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** *
11945474 CATCTGCGTACACCCCCTCGGCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
584 CATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * *
11945539 GGGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGC
649 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
11945604 ATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
714 ATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
11945669 TAGGAATGAACTCTGTATGCCTATGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGCCAG
778 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * * * * *
11945734 -GGGGCAGGATGCGAAAGTCGGGGATCGGTC-GGTCCCCCTCTACGTGCTGCTGATCC
843 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * **
11945790 TGCTACCATAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
11945855 CCGACGAAACGA--GCTGATGGGCGGGAGGGCTCTACGCCGGCCAGAGAGACGGGATACGCAAGC
66 CCGACGAAACGAGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
11945918 CGTGGATCAATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTATGTG-CAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
11945982 TTTATGGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGATGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * ** * * *
11946046 CTCATTTTTTATTTTTCACAATTTTCAAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCG
261 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * ** *
11946111 GAAAGAGTTTAGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TTGAAACGCACAAAAA
326 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAA
* ** *
11946175 ATTTTTGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCA
390 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
11946240 GACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTTTTTAA---GG-G-G-GT
455 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
11946299 T-T-GA-----GA--AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATC
520 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * ** * * *
11946355 ATGTGTGCAGACTGCCCCCGGCCCCCCCGATCGCCAGAA-CATAATGTCGTCGGTCAGGTTCTCT
585 ATGTGCGCACAC-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * * *
11946419 GGCAATGCTCCAACGATGTTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAA
648 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
11946484 CATGTGCTGCTGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
713 CATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * ** * *
11946549 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCACTCAGTCAGCCA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * ** * * * *
11946614 GAGGGGCGGGATGCACAAGCCAGGGATCGGCCAAGTCCCCATTTGTGTGCTACCGATCC
842 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * *
11946673 TATTGCCGTAACCCTCAGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** ** * *
11946738 TTGACGAAACGAGCGGGTGGACGGGCGGGCGGGCACTACGCCTGCTAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAG-GGCAGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
11946803 GCCATGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* *
11946868 GTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * **
11946933 GACTAGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGCCATTCGGGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * *
11946998 CAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-TAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
11947062 AAATTCACCTAAAAGCTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
11947127 TGACACTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
11947192 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCATCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * * * *
11947257 CATGTGTGCAGA-CCCCACTGCCCTCCTGATCGCCAGAACCCCATTGTCGCCTGTCAGGTTCTCC
584 CATGTGCGCACACCCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * * *
11947321 GGTGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAG
648 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
11947386 CATGTGCTCTCGTAACCCTCGGTCCGGTCTGATCTTAGGCTGGGAATGAATTCCGTATGCTTAGA
713 CATGTGCTC-CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* **
11947451 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCTTGTGCTCAGCCGGCCA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * * * * * * * **
11947516 GAGGGGCAGGATGCGTAAGCCGAGGATCGACTGGGTCCCACTCTACGTGTTAACGATCC
842 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
11947575 TGCTGCCGCAACCCTTGGTCCAGTCTGATCATAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** ** *
11947640 CCGACGAAACGAGCAGGTTGGCGGGCGGGCGGGCGGCACTATACCGGCTAGAGAGACGGGATGCG
66 CCGACGAAACGAG--GGCAGGCGGGCGGGC--G-GGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * ** * * *
11947705 CAAGCTGTTGATCGATAGGGTGGTGGGTGGGTTTAGGTGCATCTTCATATTTTTGCATGCCAATG
126 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
*
11947770 CCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
191 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * *
11947835 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGAGAATTTTCACAATTT
256 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* * *
11947900 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCATA
321 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
11947965 AAAAAATTCAGCCAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGGAAAAAGTGTCCCCAT
386 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
11948030 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGT
451 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
11948095 GAGTTCTTGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
516 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
11948160 CATCATGTGTGCACACCCACCCCCGGCCCCCCTAATCACCGGAACCCCAAATTCCACCGGTCAGG
581 CATCATGTGCGCACA-CC-CCCCCGGCCCCCC-GATCGCCGGAACCCC-AATGCCGCCGGTCAGG
** * * * * *
11948225 TTCTCCGGTGATGCTCCTACGATGGCGCCCCGACGAAGAAAAATGTGGCACCATCACATGCTCGA
642 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * *
11948290 GCCCAGCATGTGCTGCTGCAACTCTCGGTCCGGTCCGATATTAGACTGGGAATGAACTCCGTATG
707 GCCCAGCATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
11948355 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
771 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* ** * * *
11948420 CTGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCAATCT
836 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * * *
11948485 TGCTACCGTAACCCTCAGTCTGATCTGATCTTAGACTGGGAATAAAGTCCATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
11948550 CCGACGAAAC----G-A-GCGAGCGGGCAGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGC
66 CCGACGAAACGAGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
11948609 CATGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCTTTCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* * *
11948674 TTTTTGGCTTGTAAATTCATACAGTGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * ** * *
11948739 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTTCCA
261 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* ** *
11948804 GAAGGATTTTTGGCCCCAAACTTGGTAGAAATGATCCTTGTATTTTTGTTGGCATGTACAAAAAA
326 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
**
11948869 ATTCAGCTAAAAACTCCTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
391 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
11948934 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTT
456 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
11948999 CTTGAGGTATGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACTTCA
521 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * ** *
11949064 TGTGCAGC-CAACCCCCCAGCCCCCTTGATCGCCGGAACCCCAATGCCTCCGGTCAACTTCTTC-
586 TGTGC-GCACACCCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * *
11949127 AGCGATGCTCTGATGATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCGAG
649 A-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
11949192 CATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA-----TATGCTTAGA
713 CATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
11949252 CTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGGAATGAGCGTGCGGGCGCTCAGCCGGCCA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * *
11949317 GTGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
842 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
** ** * * *
11949376 TGCTATCGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATCAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
11949441 CCGATGAAACGAGCGGGCGGGTGGGCGTGAGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAA
66 CCGACGAAACGA--GGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
** *
11949506 GTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATCTACGTGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* *
11949571 TTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
**
11949636 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * *
11949701 CGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTAGGGATGCAAAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
11949765 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
11949830 AAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTT-A---------AG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
**
11949885 -----G-GG---G-T-----AT-----G--------AGGGCCAAGTACCAGCACCCATCATACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* **
11949922 CATGTGCGCACA-CCCCCCGATG-CCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCT-
584 CATGTGCGCACACCCCCCCG--GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
11949984 CTAGCGATGCTCCGGCGATGGTGCCCC-AGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
647 CGA-CGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* ** * *
11950048 TAGCATGTGCTGCAAACAACCCTCGGTCTGGT-CGATCTTAGATTGGGAATGAACTCCGTATGCT
710 CAGCATGTGCT-C-CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
11950112 TAGACTGGGAATGAACTCCATTTCCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
773 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
* * * * * * *
11950177 ACCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCTGGGTCCCCCTCTGCGTGCTACCAATCT
838 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** *
11950240 TGCTGCCGCAACCCTCGGTCGGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
11950305 CCGACGAAAC----G-A-----GCGGACGGGCACTACACCAGCCAGAGATACGGGATGCGCAA-C
66 CCGACGAAACGAGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
11950359 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATACCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
11950424 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCCAGACGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * ** *
11950489 CTCATTTTATATTTTTCACAATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCG
261 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
11950554 GAAGGAGTTTTAGCCCCAAACATGGTACACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
326 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
11950619 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
391 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
11950684 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
456 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** *
11950749 CTCGAGGTTTGATGAGGGATAGGGGGGAAATATAAGGGCCAAGTACCACCACCCATCGCACATCA
521 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
11950814 TGTGCGCACAACCCCCCCAGCCCCCCCGATCACCGAAACCCCAACGCCGCCGGTCAGG---T---
586 TGTGCGCAC-ACCCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* *
11950873 ----T-CTCCGACGATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
649 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * * *
11950933 ATGTGCTACCGTAACCATCGGTCCGATCCGATCTTAGACTAGCAATGAACTCTGTATGCTTAGAC
714 ATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * * * *
11950998 TGGGAATGAAATCCGTATGCCTAAGTCTACCAATGAAACAAGCCTGCAGGCGCTCAGCCGGCCAG
778 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* *
11951063 AGGGGCGGGATGCCCAAGCCGGGGATCGGTCGGGT-CCCC-CT-C---C-G-CG----
843 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * ** *
11951109 TACTGCCGCAGCCCTAAGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * **
11951174 CCGATG--A--A----A--CGGGCGGGCGGGCATTACGCCGGCCAGAGAGACGGGATGCGTGAGC
66 CCGACGAAACGAGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
11951229 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGACAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
11951294 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * ** *
11951359 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGTTTCAAGATTTTTTAAAATTTTTTTG
261 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
11951424 AAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
326 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
11951489 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
391 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
11951554 ACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
456 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
11951619 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
521 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
11951684 TATGCGCACACCCCCCC-G------G-TCGCCGGAACCCCAATGACGTCGGTCAGGTTCTCC-AG
586 TGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-
* *
11951740 TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
650 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
11951805 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATAAGCTTAGACT
715 TGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* ** *** *** * ** *
11951870 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGACTCGTTTTCTATTTTTTATGATTTTCAAAA
779 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG------A-GCGTGCGGGTGCTC--AG
***** * ** **** ** ****
11951935 CTTTTTA-TGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGA--GTTTTGG-CCCCAAACT-TG-
835 CCGGCCAGAGGGGCGGGA---TGCGCAA----GCCGG--GGATCGGCCGGGTCCCC---CTCTGC
**
11951994 GTAGACGTGATCCTTGTATTTT
888 GT-G-C-TG--CC--G-A-TCC
* ** * **** * * * * * * * ** * *
11952016 TGTTG--GC-ATGCACAAAACGAT-TCAGCTAAAAACT-CGAAGTGTAC-AAGATTTTG--TGA-
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCT-TAGACTGGGAA-TGAACTCCG--TATGCCTAAG
*** * * * *** *** *
11952072 CCATTTGA--AAA-AAGTGTC---C--CCATTTCAAACACTTTAATGGCTACTGG-CAGCA-A-A
62 CCAACCGACGAAACGAG-GGCAGGCGGGC-GGGCGGGCAC--T-A-CGC--C-GGCCAG-AGAGA
** * * ** ** ** * *
11952126 CCTGTAAAAT-CTCAAATCC-T-CTTTAAGGGGGTGGTAGGTGGGTGTAGGCACATCTTAATATT
117 -C-G--GGATGCGC-AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * * *
11952188 TCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTG
177 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* ** * * ** * * **
11952253 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG---TGCG-CACATCATG-TGTACAAG
242 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGG
* * ** * ** * *
11952313 ATTTTGT--GATCATTT-GAAAAAAG-TAT--CCCC--A-TT--TCAGAC---A--CTT-TAATG
307 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGT-ATT
** ** * * ** * * ** *
11952361 GCTACTGGCA-GCA-AACCTGTAAAATT--TC-AAATGCTCTTTAAGGGGGTATGAG-TTTT-CG
370 TTTGTTGGCATGCACAA----AAAAATTCAGCTAAAAACTC--GAA--GTGTACAAGATTTTGTG
** * * * ** * * **** * *
11952419 A-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
427 ACCATTTGA--A--AAAAGTGTCCCCAT-T-----TC-AG-A-CA-CTTTAATGGC-TA-C-TG-
*** *** * * * * *** ** * * *
11952483 GC-GCACACCACC-CCCAGCCCCCGATTGCCGGAACCACAATGTCGTTCGTCAGGTTCTCCGA-C
474 GCAGCA-A--ACCTGTAAAATCTCAAATG-C---TCTTTAA-GGGGGT-GTGA-GTTCT-CGAGG
** * ** ** ** * **** * *** * *
11952545 AATGCTCCGGTGAT-GGTGCCCCGGT-GAAGAAAAATACGACACCAGCACATGCCCGAGCCCAAC
528 TTTGATGAGG-GATAGG-GGGCCAATATAAGGGCCA-A-G-TACCAGCAC---CCATCGCACATC
* * * ** * * * ***
11952608 ATGTGCTGCCCTA-ACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCACATGCC-TAA
585 ATGTGC-GCAC-ACCCCCCCGG-CC-CCCCGATC---G-C--CG---GAACCCCA-ATGCCGCCG
* ** * * * ** * ****
11952671 GTCA---AC-CC-ACGA---AACGAGCG-TGCGGGCGCTCAACCG--GCTAAA-GGGGTGGGATG
636 GTCAGGTTCTCCGACGATGCTCCGA-CGATG-GTGC-CCCGA-CGAAGAAAAATGCGGCACCA-G
* * * * ** * * * * **
11952724 TACAAGCCGGGGATC-G-ATCG-GGT-C-C--CCCTCTGTGTGCTGT-CGATCCT-G-CTGCCAC
696 CACATGCCCGAGCCCAGCAT-GTGCTCCGCAACCCTC-G-GTCCGGTCCGATCTTAGACTG--GG
*** * * **
11952779 AACCTGCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGACT
756 AA--TGAACTCC-GTATG--CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
*** *** * ** * ***** * ** * **** *******
11952844 CGTTTTCTATTTTTTATGATTTTCAAAACTTTTTA-TGGTTCGAGATTTTTTAA-AATATTTTCG
816 CG------A-GCGTGCGGGTGCTC--AGCCGGCCAGAGGGGCGGGA-TGCGCAAGCCGGGGATCG
** * **
11952907 GAAGGAGTTTTGGCCCCAAACT-TG-GTAGACGTGATCCTTTTATTTT
871 GCCGG-G---T--CCCC---CTCTGCGT-G-C-TG--CC---GA-TCC
* * *** * * * * * * * ** * *
11952953 TGTTGGCATGCACAAAAT-GATTCAG-CT-A---AAAACT-CGAAGTGTAC-AAGATTTTG--TG
1 TGCT-GC-CGCA-ACCCTCGGTCCGGTCTGATCTTAGACTGGGAA-TGAACTCCG--TATGCCTA
*** * * * *** *** * * *
11953008 A-CCATTTGA--AAA-AAGTGTC---C--CCATTTCAAACACTTTAATGGCTACTGG-CA-ACAA
60 AGCCAACCGACGAAACGAG-GGCAGGCGGGC-GGGCGGGCAC--T-A-CGC--C-GGCCAGAGAG
** * ** **
11953062 ACTTGTAAAAT-CTCAAATGCTC-T---TTAAGGGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
116 AC--G--GGATGCGC-AA-GC-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * * **
11953122 ATTTCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCGT
174 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* ** * * ** * *
11953187 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG---TGCG-CACATCATG-TGTAC
239 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC
** * * ** * ** *
11953247 AAGATTTTGT--GATCATTT-GAAAAAAG-TAT--CCCC--A-TT--TCAGAC---A--CTT-TA
304 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGT-
*** ** * *** * * * * **
11953295 ATGGCTACTGGCA-GCA-AACCTGTAAAATCTCAAATGCTCTTTAA-TGGGGTATGAGTTCTCGA
367 ATTTTTGTTGGCATGCACAA----AAAAAT-TC--A-GCT-AAAAACT--CG-AAGTGTACAAGA
* ** ** * * * ** ** * *
11953357 GGTTTGATGAGGGATAGGGGGCCAATATAAG-G-GCCAAGTACCAG-CAC--CCATCGCACATCA
420 -TTTTG-TGA-CCAT---TTG--AA-AAAAGTGTCCCCA-TTTCAGACACTTTAATGGC-TA-C-
*** ** * * * *** ** * *
11953417 TGTGC-GCACACCACC-CCCAACCCTCGATTGCCGGAACCCCAATGTCGCTGGTCAGGTTCTCCG
472 TG-GCAGCA-A--ACCTGTAAAATCTCAAATG-C---TCTTTAA-GGGGGT-GTGA-GTTCT-C-
* ** * * * * * * * * *
11953480 GCAATGCTCCGGTGATGG-TACCCCGGTGAAG-AAAAAT-ACGACACCAGTA-CATGC-CCGA--
524 G--A-GGTTTGATGAGGGATA----GG-G-GGCCAATATAAGGGC-CAAGTACCA-GCACCCATC
* * * ** * * **
11953538 GCCCAGCATGTGCTGC-C-CCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAA--TGAACT-CC
578 GCACATCATGTGC-GCACACC--CCCCCGG-CC-CCCCGATC---G-C-CGGAACCCCAA-TGCC
*** * * * * ** * * * ** * *
11953598 GTATGCCTAAG-TCAACCCACGA---AACGAGCG-TGCGGGCGCTCAACCG--GCTAAA-GGGGT
632 GCCGGTC-AGGTTC-TCCGACGATGCTCCGA-CGATG-GTGC-CCCGA-CGAAGAAAAATGCGGC
*** * * * * ** * * * *
11953655 GGGATGCGCAAGCCGGGGATC-G-ACCG-GGT-C-C--CCCTCTGTGTGCTGT-CGATCTT-G-C
691 ACCA-GCACATGCCCGAGCCCAGCA-TGTGCTCCGCAACCCTC-G-GTCCGGTCCGATCTTAGAC
** * *** * * *
11953710 TGCCACAACCCGCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
752 TG--GGAA--TGAACTCC-GTATG--CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * ***
11953775 ACGAAATTAGCG-GACGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCATA
810 ACG-AA--A-CGAG-CGTGC-GG-GTGCTC-A-GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
*** ***** * *
11953839 GATCGATAGGGTGGTAGGT-TG-GT-TTAGGCCCAT-C
866 GATCGGCCGGGT-CCCCCTCTGCGTGCT--GCCGATCC
** *** ** * * * ** ** * *
11953873 T--T--CATATTTCT-GTGTGCCAATAC-CATTTTTATGGCTTGTAAATTCA-TAC-AATGCTCC
1 TGCTGCCGCAACCCTCG-GT-CCGGT-CTGA-TCTTA-GAC-TGGGAATGAACTCCGTATG---C
** * *** * * * * * * ******
11953930 CTTAAGCC-TTC-ACGTGAA-G-TTTCATGGCAAGAC-GAC--TCATTTTCTATTTTTCATGATT
57 C-TAAGCCAACCGACG-AAACGAGGGCA-GGC-GGGCGGGCGGGCA-CTAC-GCCGGCCA-GA--
** **** *** ** ** * *** ** * * * *
11953988 TTTGACACTTTTTAC-AG-TTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGC-C--C--
113 -GAGACGGGATGCGCAAGCCGT-GGA---TCGATAGGGTGGTAGG-TGG-GTTTAGGCACATCTT
* ** * * * * * * *
11954046 CAAACTTGGTAGACGTGATCC-TTG-TATTTTTGTTGGCATGCACAA---A-AAAAT--TCAGCT
171 CATA-TT--TCTACGTG--CCAATGCCATTTTT-ATGGCTTGTA-AATTCATACAATGGTC-CCT
* ** * * * * *** ** * ***
11954103 AAAAAC-TCGAAGTGTACAAGATTTTC-TGACCATTTGA-AAAAAGTGTCCCCATTTCAGAC-AC
228 TAAGCCTTC-ACGTG---AAG--TTTCATG-GCA--AGACGACTCGT-TTTCTATTTTTCACGA-
* *** * * * **** * * *** * * ** **
11954164 TTTAATGGCTCCTGTAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGTGTGTAAGTTCTTGA
282 TTT-TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT--T-TTTTCGGAAG-G--AGTT-TTG-
***** * * * * * ** ** **** *** * * * *
11954229 G-GTTTGA-TGAGGGATAAGGGGGCC-CATATAAGGGCCAAGCACCAGCACCCATCACACA-TCA
338 GCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTG-TTGGCA--TGCA--CA-AAAAAATTCA
** * * * *** ** *** * *
11954290 TGTGCGCACACCCCCCCG-GCGCCTCATATTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGAC
396 ---GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
11954354 ACTTTAATGGCTACTGGCAGC-AACCTGTAAAATCTAAAATGCTATTTAAGGGGGTTTGAGTTCT
458 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
11954418 CAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATG
523 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * ** ** * * ***
11954483 TGCTCACACCCCACC-GCCCCCCGATCATCGGAACCCCAATGCCATCGGTTAGGTTCTCTGGTAA
588 TGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * * *
11954547 TGCTTCGACGATGGTGCCCCGACAAAGAAAAATACGGCACCAGTACATGCCCGAGCCCAGCATGT
653 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
11954612 GCTGCTGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
718 GCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
11954677 AATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGG
782 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * * * * *
11954742 GCGGGATGCGCAAGCCGGGGTTCGACCAGGTCCCCCTCTGCGTGCTGTCAATCT
847 GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
11954796 TGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCAT-TAGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT-GCCTAAGCCA
* * * * *
11954860 ACCGACGAAAC----G-A-GCGGGCGAGTGGGCACTACGTCGGCCAGAGAGGCAGGATGCGCAAG
65 ACCGACGAAACGAGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
11954919 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * * *
11954984 TTTTATGGTTTGTAAATTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATG
195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
11955049 ACTCGTTTTCTATTTTTCACAATTTTTTAAATTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTC
260 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
11955114 AGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTCTTCGCATGCACAAAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
11955179 AATTCCGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATGTT-
390 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-TTC
11955243 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
11955308 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * * * *
11955373 CATGTGCGCACATGCCCTCGGCCCCCCGATCGTCAGAACCCCAATGCCACCGGTTAGGTTCTCCG
584 CATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
*
11955438 ACGATGCT-C--C-A---------G-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
649 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
11955489 ATGTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGAC
714 ATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * ***
11955554 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAATTGGCCAG
778 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * * * *
11955619 AGGGGCGGGATGTGCAAGCCGGGGATCAGCCGAGT-CCCCTTTACGTGCTGCCGATCC
843 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
11955676 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACCGGGAATGAACTCCGTATGCCAAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
11955741 CCGACGAAACGAGCGGGCAGGCGGGTGGGAGGGCACTACGTCAGCCGGAGAGACGGGATACGCAA
66 CCGACGAAACGA--GGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
11955806 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCGAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* *
11955871 TTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTCCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
11955936 GACTCGTTTTTTATTTTTC-CAGATTTTTGAAACTTTTTGTGGTTCGAGTTTTTTTAAAATTTTT
259 GACTCGTTTTCTATTTTTCAC-GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * *
11956000 TTGGAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTA------TT----T-------
323 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
11956048 ----TT--G-T------T-G--GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
11956097 GAGACACTTTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGAGGGTATGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * ** * *
11956162 GTTCTTGAGGTTTGATGAGGGTTA-TGGGCCAAATATCGGGGCCAAGTACCAGCACCTATTGCAC
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCC-AATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * *
11956226 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCTGGTCAGGTTCC
582 ATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
** ** * *
11956291 CCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCAGAGCCC
646 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
11956356 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATAG-TT
711 AGCATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT-GCTT
* * * * *
11956420 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAACGAGTGTGCGAGCGCTCAGTCG
774 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGTGCTCAGCCG
* * * * *
11956485 GCCTGAGGGGTGGGATGCGCAAGCTGGGGATCGGTCGGGTCCTCCCTCTGCGTGCTGTCGATCC
838 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCC-CCCTCTGCGTGCTGCCGATCC
* * * *
11956549 TGCCGCCGCAACCCTCGATCC-GACCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
11956613 CCGACAAAATGA--GC-GGACGGGCGGGCGGGCACTACGCCGGCCAGAAAGACGAGATGCGCAAG
66 CCGACGAAACGAGGGCAGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
**
11956675 CCGTGGATCGATAGGACGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
11956740 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
11956805 ACTC-TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTC
260 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
11956869 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
11956934 AATTCAG-GAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
390 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
11956998 GACACTTTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCGAATGCTTTTTAAGGGGGTGTGA
455 GACAC--TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
11957063 GTTCTCAAGGTTTGATCG-GGGATAGGGGGCCAATACAAGGACCAAGTACCAGCACCCATCGCAC
518 GTTCTCGAGGTTTGAT-GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * ** * * * * * *
11957127 ATCATGTGTGCACA-CCCCCCGACCCCCCCGATCATCGAAACCCTAATACCGTCGATCAGTTTCT
582 ATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
11957191 CCGACGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATGGGGCACCAGCACATGCCTGAGCC
646 CCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * **
11957255 CAGCATGTGCTGTCGCAACCATCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTT
710 CAGCATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
11957320 AGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGA
774 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGG
* * * *
11957385 CCAGA-GGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCACCCTCTGCATGCTACCGATCC
839 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * *
11957446 TACTACCACAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTTAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
11957511 CCGACGAAAC-AAGAC-GGCGAGCGGGCGGGCACTACGCCAGCTAGAGAAACGGGATGCGCAAGC
66 CCGACGAAACGAGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * **
11957574 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
11957639 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
11957704 CTCGTTCTCTATTTTTCATGATTTTTGAAA-TGTTTTGCGGTTCCGGATTTTTTACAATTTTTTC
261 CTCGTTTTCTATTTTTCACGATTTTTGAAACT-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* *
11957768 GGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
11957833 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCA
390 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
11957898 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
455 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
11957963 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
520 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
11958028 AAGTGTGCACACCCCCCCGACCCCACCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCG
585 ATGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
11958093 ACGATGCTCCGACGATGGTGCACCGACGAAGAAAAATGCGGCAACAGCACATGCCCGAGCCTAGC
649 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
11958158 ATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAGTGAACTCCGTATGCTTAGAC
714 ATGTGCT-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
11958223 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGGGTACGGGCGCTCAGCCGGCTAG
778 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * ** * * * * * *
11958288 AGGGGC-GGATTGCGTAAGTCGGGGATCGATCGAGTCCCCCTATGTGTTCTGCCAATCT
843 AGGGGCGGGA-TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * ** ** * *
11958346 TGCTTCCAAAACCCTCGATATGGTCCAATCTTAGACTGGGAATGTACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
11958411 CTGATGAAATGAGCGGGC-GAGCGGGCAGGCGAGCACTACGTCGGCCAGAGAGACGAGATGCGCA
66 CCGACGAAACGA--GGGCAG-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
11958475 AGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATAATAGAGTGGTAGGTGGGT
128 AGCCGTGGATC---------G-A--------TA-G---------------G-GTGGTAGGTGGGT
* * *
11958540 TTAGGCACATCTTCATATTTCTATGTGCGAATGCCATTTTTATGGCTTGTAAATTAATACAATGG
158 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
11958605 TCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
223 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
11958670 AAACTTTTTGTGGTTCGGGATTTTTT-AAATTTTTTCTGGAAGGAGTTTCGGCCCCAAACTTGGT
288 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
11958734 GGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTACAAACTCGAAGTTTACA
352 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
11958799 AGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTCCAGACAC
417 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
11958842 CCTTTTAAAG
Statistics
Matches: 16096, Mismatches: 2422, Indels: 1527
0.80 0.12 0.08
Matches are distributed among these distances:
851 194 0.01
852 190 0.01
853 1 0.00
854 7 0.00
855 172 0.01
856 44 0.00
857 2 0.00
858 3 0.00
859 308 0.02
860 81 0.01
861 5 0.00
862 2 0.00
863 3 0.00
864 353 0.02
865 70 0.00
866 66 0.00
867 316 0.02
868 168 0.01
869 109 0.01
870 561 0.03
871 202 0.01
872 52 0.00
873 41 0.00
874 1 0.00
875 71 0.00
876 1 0.00
877 4 0.00
878 9 0.00
879 11 0.00
880 156 0.01
881 562 0.03
882 53 0.00
883 128 0.01
884 464 0.03
885 64 0.00
886 15 0.00
887 92 0.01
888 419 0.03
889 144 0.01
890 137 0.01
891 371 0.02
892 57 0.00
893 217 0.01
894 700 0.04
895 495 0.03
896 437 0.03
897 251 0.02
898 652 0.04
899 1227 0.08
900 433 0.03
901 852 0.05
902 787 0.05
903 435 0.03
904 850 0.05
905 359 0.02
906 219 0.01
907 22 0.00
908 20 0.00
909 42 0.00
910 323 0.02
911 25 0.00
912 14 0.00
913 152 0.01
914 22 0.00
915 10 0.00
916 7 0.00
917 10 0.00
918 6 0.00
919 19 0.00
920 13 0.00
921 10 0.00
922 56 0.00
923 19 0.00
924 13 0.00
925 28 0.00
926 32 0.00
927 30 0.00
928 21 0.00
929 29 0.00
930 78 0.00
931 37 0.00
932 45 0.00
933 28 0.00
934 25 0.00
935 34 0.00
936 36 0.00
937 739 0.05
938 37 0.00
939 296 0.02
940 16 0.00
941 14 0.00
942 16 0.00
943 14 0.00
944 6 0.00
945 25 0.00
946 5 0.00
947 6 0.00
948 7 0.00
949 10 0.00
950 9 0.00
951 14 0.00
952 9 0.00
953 2 0.00
954 5 0.00
955 2 0.00
956 2 0.00
957 5 0.00
958 3 0.00
959 3 0.00
960 1 0.00
961 3 0.00
962 7 0.00
963 5 0.00
965 5 0.00
968 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:11941221 original size:26 final size:26
Alignment explanation
Indices: 11941192--11941241 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11941182 GTCCGATCTG
11941192 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
11941218 AGACTGGGAATGAACTTCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
11941242 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:11943020 original size:26 final size:26
Alignment explanation
Indices: 11942982--11943034 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11942972 CCGATCCGAT
*
11942982 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
11943008 CTTAGATTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
11943034 C
1 C
11943035 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:11945665 original size:26 final size:26
Alignment explanation
Indices: 11945636--11945688 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11945626 CCGGTCCGAT
*
11945636 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
11945662 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11945688 C
1 C
11945689 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11946553 original size:26 final size:26
Alignment explanation
Indices: 11946517--11946569 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11946507 CTGATCTGAT
11946517 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
11946543 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11946569 C
1 C
11946570 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11947448 original size:26 final size:26
Alignment explanation
Indices: 11947419--11947471 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11947409 CCGGTCTGAT
* *
11947419 CTTAGGCTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11947445 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11947471 C
1 C
11947472 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11948359 original size:26 final size:26
Alignment explanation
Indices: 11948330--11948381 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
11948320 CGGTCCGATA
11948330 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
11948356 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
11948382 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:11951005 original size:26 final size:26
Alignment explanation
Indices: 11950958--11951035 Score: 70
Period size: 26 Copynumber: 3.0 Consensus size: 26
11950948 CATCGGTCCG
11950958 ATCCG-AT-CTTAGACTAGCAATGAA
1 ATCCGTATGCTTAGACTAGCAATGAA
* * * *
11950982 CTCTGTATGCTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTAGCAATGAA
* * *
11951008 ATCCGTATGCCTAAGTCTACCAATGAA
1 ATCCGTATG-CTTAGACTAGCAATGAA
11951035 A
1 A
11951036 CAAGCCTGCA
Statistics
Matches: 40, Mismatches: 11, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
24 3 0.08
25 2 0.05
26 22 0.55
27 13 0.32
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTAGCAATGAA
Found at i:11951410 original size:870 final size:865
Alignment explanation
Indices: 11949999--11951904 Score: 2707
Period size: 870 Copynumber: 2.2 Consensus size: 865
11949989 GATGCTCCGG
* * * *
11949999 CGATGGTGCCCC-AGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCAA
1 CGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC-C
* * * *
11950063 ACAACCCTCGGTCTGGT-CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
64 GCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * * *
11950127 CTCCATTTCCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGA
129 CTCCGTATGCCTAAGTCAACCCATGAAACAAGCCTGCAGGCGCTCAGCCGACCAGAGGGGCGGGA
* **
11950192 TGCACAAGCCGGGGATCAGCTGGGTCCCCCTCTGCGTGCTACCAATCTTGCTGCCGCAACCCTCG
194 TGCACAAGCCGGGGATCAGCTGGGTCCCCCTC-GCGCGCT---AA---T-CTGCCGCAACCCTAA
**
11950257 GTCGGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGA
251 GTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGA
*
11950322 CGGGCACTACACCAGCCAGAGATACGGGATGCGCAACCATGGATCGATAGGGTGGTAGGTGGGTT
316 CGGGCACTACACCAGCCAGAGAGACGGGATGCGCAACCATGGATCGATAGGGTGGTAGGTGGGTT
11950387 TAGGCACATCTTCATATTTCTACATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
381 TAGGCACATCTTCATATTTCTACATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
11950452 CCCTTAAGCCTTCACATGAAGTTTCATGGCCAGACGACTCATTTTATATTTTTCACAATTTTCAA
446 CCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTATATTTTTCACAATTTTCAA
* ** *
11950517 AACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACATGGTAC
511 AACTTTTTGAGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACATGGTAC
*
11950582 ACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
576 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
11950647 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
641 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
11950712 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGGA
706 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCA
*
11950777 AATATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACAACCCCCCCAGCCCCCCCG
771 AATATAAGGGCCAAGTACCACCACCCATCGCACATCATATGCGCAC-ACCCCCCC-G-------G
*
11950842 ATCACCGAAACCCCAACGCCGCCGGTCAGGTTCTCC-GA-
827 -TCACCGAAACCCCAACGACGCCGGTCAGGTTCTCCAGAC
* * * *
11950880 CGATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGT
1 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * * *
11950945 AACCATCGGTCCGATCCGATCTTAGACTAGCAATGAACTCTGTATGCTTAGACTGGGAATGAAAT
66 AACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
11951010 CCGTATGCCTAAGTCTACCAATGAAACAAGCCTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATG
131 CCGTATGCCTAAGTCAACCCATGAAACAAGCCTGCAGGCGCTCAGCCGACCAGAGGGGCGGGATG
* * *
11951075 CCCAAGCCGGGGATC-GGTCGGGTCCCCCTC-CGCG-T-A-CTGCCGCAGCCCTAAGTCCAGTCC
196 CACAAGCCGGGGATCAGCT-GGGTCCCCCTCGCGCGCTAATCTGCCGCAACCCTAAGTCCAGTCC
* * * *
11951135 AATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGGGCGGGCGGGCATTA
260 AATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCACTA
* * * * **
11951200 CGCCGGCCAGAGAGACGGGATGCGTGAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
325 CACCAGCCAGAGAGACGGGATGCG-CAACCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
11951265 TCTTCATATTTCTGCATGA-CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAA
389 TCTTCATATTTCTACAT-ACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * ** **
11951329 GCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
453 GCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTATATTTTTCACAATTTTCAAAACTTTT
* * * * * * **
11951394 TGAGTTTCAAGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTAGATGTGAT
518 TGAGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACATGGTACACATGAT
*
11951459 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGT
583 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
11951524 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAA
648 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
11951589 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
713 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAAATATAA
* * * *
11951654 GGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCCGGTCGCCGGAACCCCAAT
778 GGGCCAAGTACCACCACCCATCGCACATCATATGCGCACACCCCCCCGGTCACCGAAACCCCAAC
*
11951719 GACGTCGGTCAGGTTCTCCAGTGATGCTCC
843 GACGCCGGTCAGGTTCTCCA--GA-----C
11951749 GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
1 --CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* *
11951814 GCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATAAGCTTAGACTGGGAATGAA
64 GCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
11951879 CTCCGTATGCCTAAGTCAACCCATGA
129 CTCCGTATGCCTAAGTCAACCCATGA
11951905 CTCGTTTTCT
Statistics
Matches: 915, Mismatches: 94, Indels: 42
0.87 0.09 0.04
Matches are distributed among these distances:
860 30 0.03
861 1 0.00
863 2 0.00
868 1 0.00
869 109 0.12
870 433 0.47
871 142 0.16
874 1 0.00
878 1 0.00
879 3 0.00
880 14 0.02
881 177 0.19
882 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (865 bp):
CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
AACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCATGAAACAAGCCTGCAGGCGCTCAGCCGACCAGAGGGGCGGGATG
CACAAGCCGGGGATCAGCTGGGTCCCCCTCGCGCGCTAATCTGCCGCAACCCTAAGTCCAGTCCA
ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCACTAC
ACCAGCCAGAGAGACGGGATGCGCAACCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTACATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACATGAAGTTTCATGGCAAGACGACTCATTTTATATTTTTCACAATTTTCAAAACTTTTTGA
GGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACATGGTACACATGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAAATATAAGGG
CCAAGTACCACCACCCATCGCACATCATATGCGCACACCCCCCCGGTCACCGAAACCCCAACGAC
GCCGGTCAGGTTCTCCAGAC
Found at i:11953675 original size:937 final size:937
Alignment explanation
Indices: 11951862--11953773 Score: 3527
Period size: 937 Copynumber: 2.0 Consensus size: 937
11951852 ACTCCATAAG
11951862 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGACTCGTTTTCTATTTTTTATGAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGACTCGTTTTCTATTTTTTATGAT
* * *
11951927 TTTCAAAACTTTTTATGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
66 TTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATATTTTCGGAAGGAGTTTTGGCCCCAAACT
11951992 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACGATTCAGCTAAAAACTCGAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACGATTCAGCTAAAAACTCGAAGTG
*
11952057 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAA
11952122 CAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGGTAGGTGGGTGTAGGCACATCTTAATAT
261 CAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGGTAGGTGGGTGTAGGCACATCTTAATAT
11952187 TTCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGT
326 TTCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGT
11952252 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGTGCGCACATCATGTGTACAAGATTT
391 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGTGCGCACATCATGTGTACAAGATTT
11952317 TGTGATCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
456 TGTGATCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
11952382 AAATTTCAAATGCTCTTTAAGGGGGTATGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATA
521 AAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
11952447 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCAGCCCCCGATTGCC
586 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCAACCCCCGATTGCC
* *
11952512 GGAACCACAATGTCGTTCGTCAGGTTCTCCGACAATGCTCCGGTGATGGTGCCCCGGTGAAGAAA
651 GGAACCACAATGTCGCTCGTCAGGTTCTCCGACAATGCTCCGGTGATGGTACCCCGGTGAAGAAA
*
11952577 AATACGACACCAGCACATGCCCGAGCCCAACATGTGCTGCCCTAACCCTCGGTCCAGTCTGATCT
716 AATACGACACCAGCACATGCCCGAGCCCAACATGTGCTGCCCCAACCCTCGGTCCAGTCTGATCT
11952642 TAGACTGGGAATGAACTCCACATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
781 TAGACTGGGAATGAACTCCACATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
* *
11952707 GCTAAAGGGGTGGGATGTACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTG
846 GCTAAAGGGGTGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCGATCCTG
*
11952772 CTGCCACAACCTGCGGTCCAGTCTGAT
911 CTGCCACAACCCGCGGTCCAGTCTGAT
11952799 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGACTCGTTTTCTATTTTTTATGAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGACTCGTTTTCTATTTTTTATGAT
11952864 TTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATATTTTCGGAAGGAGTTTTGGCCCCAAACT
66 TTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATATTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
11952929 TGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAATGATTCAGCTAAAAACTCGAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACGATTCAGCTAAAAACTCGAAGTG
11952994 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAA
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAA
* * * *
11953059 CAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
261 CAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGGTAGGTGGGTGTAGGCACATCTTAATAT
*
11953124 TTCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCGTGT
326 TTCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGT
11953189 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGTGCGCACATCATGTGTACAAGATTT
391 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGTGCGCACATCATGTGTACAAGATTT
11953254 TGTGATCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
456 TGTGATCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
11953319 AAATCTCAAATGCTCTTTAATGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
521 AAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
11953384 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCAACCCTCGATTGCC
586 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCAACCCCCGATTGCC
* * *
11953449 GGAACCCCAATGTCGCTGGTCAGGTTCTCCGGCAATGCTCCGGTGATGGTACCCCGGTGAAGAAA
651 GGAACCACAATGTCGCTCGTCAGGTTCTCCGACAATGCTCCGGTGATGGTACCCCGGTGAAGAAA
* *
11953514 AATACGACACCAGTACATGCCCGAGCCCAGCATGTGCTGCCCCAACCCTCGGTCCAGTCTGATCT
716 AATACGACACCAGCACATGCCCGAGCCCAACATGTGCTGCCCCAACCCTCGGTCCAGTCTGATCT
**
11953579 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
781 TAGACTGGGAATGAACTCCACATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
* *
11953644 GCTAAAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCGATCTTG
846 GCTAAAGGGGTGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCGATCCTG
*
11953709 CTGCCACAACCCGCGGTCCGGTCTGAT
911 CTGCCACAACCCGCGGTCCAGTCTGAT
*
11953736 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
11953774 GACGAAATTA
Statistics
Matches: 942, Mismatches: 33, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
937 942 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (937 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGACTCGTTTTCTATTTTTTATGAT
TTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATATTTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACGATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAA
CAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGGTAGGTGGGTGTAGGCACATCTTAATAT
TTCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGT
GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGTGCGCACATCATGTGTACAAGATTT
TGTGATCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCAACCCCCGATTGCC
GGAACCACAATGTCGCTCGTCAGGTTCTCCGACAATGCTCCGGTGATGGTACCCCGGTGAAGAAA
AATACGACACCAGCACATGCCCGAGCCCAACATGTGCTGCCCCAACCCTCGGTCCAGTCTGATCT
TAGACTGGGAATGAACTCCACATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
GCTAAAGGGGTGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCGATCCTG
CTGCCACAACCCGCGGTCCAGTCTGAT
Done.