Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 73 of 190
Found at i:11954669 original size:26 final size:26
Alignment explanation
Indices: 11954640--11954692 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11954630 CTGATCCGAT
11954640 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11954666 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11954692 C
1 C
11954693 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11955557 original size:26 final size:26
Alignment explanation
Indices: 11955521--11955573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11955511 CTGGTCCAAT
*
11955521 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11955547 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11955573 C
1 C
11955574 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11956428 original size:26 final size:26
Alignment explanation
Indices: 11956392--11956441 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11956382 TGGTCTGATC
11956392 TTAGACTGGGAATGAACTCCGTATAG
1 TTAGACTGGGAATGAACTCCGTATAG
*
11956418 TTAGACTGGGAATGAACTCTGTAT
1 TTAGACTGGGAATGAACTCCGTAT
11956442 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATAG
Found at i:11958219 original size:26 final size:26
Alignment explanation
Indices: 11958190--11958242 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11958180 TCGATCCGAT
*
11958190 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11958216 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11958242 C
1 C
11958243 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11958533 original size:35 final size:35
Alignment explanation
Indices: 11958487--11958556 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
11958477 CCGTGGATCG
11958487 ATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 ATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATA
11958522 ATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 ATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATA
11958557 TTTCTATGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.11, G:0.31, T:0.31
Consensus pattern (35 bp):
ATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATA
Found at i:11959497 original size:26 final size:26
Alignment explanation
Indices: 11959457--11959509 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11959447 GTTGACTTAG
* *
11959457 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
*
11959483 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
11959509 G
1 G
11959510 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:11960744 original size:873 final size:865
Alignment explanation
Indices: 11959483--11961954 Score: 2867
Period size: 873 Copynumber: 2.9 Consensus size: 865
11959473 CCTAGTCTAA
* * * *
11959483 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
11959548 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGA
66 CTCGGGCATGTGTTGGTGCCACTTTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
11959613 ACCTAACCGGCGGCATTGGGGTTCCGGCGATC---GG-GGGGGGTGTGTGCATATGATGTGCGAT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGCGGGGGGTGTGCGCACATGATGTGCGAT
*
11959674 GGGTGCTGGTACTTGGCCCTTATACTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
196 GGGTGCTGGTACTTGGCCCTTATA-TTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
11959739 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
11959804 ACAATTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAATTTTTAGCTGAATTGTTTTTTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCA
* * * * *
11959869 TGCCAACAGAAATACAAGGATCACATTTACCAAGTTTTGGGTCAAAAATCCTTCCGAAAAAATTT
390 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
* * * *
11959934 AAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCAAGAAAAATAGAAAATGAGTCGTCTTGCCA
455 TAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
11959999 TGAAACTTCAAGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
11960064 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGCTTGCGCTTCC
585 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGCTTGCGCATCC
* *
11960129 CGTCTCTCTAGCCGACGTAGTGCCCTCCGCCCACCCGCCCGTTCATTTTATCGGTTGGCTTATGC
650 CGTCTCTCTAGCCGACGTAGTG--CTCCGCCCACCCGCCCGCTC-TTTTATCGGTTGGCTTAGGC
11960194 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGTAGCAGGATCGACAGC
712 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGC-GTAGCAGGATCGACAGC
* *
11960259 ACGTAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCACTCTAGCCGGCTGAGCACCC
776 ACGT-GAGGGGGACCCGGTCGATCCTCGGCTTGAGCATCCCGCCACTCTAGTCGG-TGAGCACCC
11960324 GCACGCTCGTTTCATGGGTTGACTTAG
839 GCACGCTCGTTTCATGGGTTGACTTAG
* * * *
11960351 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAACACATGCTAGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* ** * *
11960416 CTCGGGCATGTGTTGGTGCCACTTTTTTCTTTGTCGGGGCACTGTCGCCGGAGCATTATCGGAGA
66 CTCGGGCATGTGTTGGTGCCACTTTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
*
11960481 ACTTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGG-CGGGGGGTGTGCGCACATGATGTGCG
** * *
11960546 ATGGGTGCCAGTACTTGTCCCTTATATTGGCCCCTATCCCTCATCAAACATCGAGAACTCACACC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
11960611 CGCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
11960676 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGC
*
11960741 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATG
389 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
** **
11960806 TTAAAAAATCTAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
454 TTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
11960871 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCAT-AAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
11960935 GCAAT-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC--T--AT-CAT--TT---CAT
584 GC-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGCTTGCGCAT
* ** * ** * ** * *
11960989 -CGGT-TGGCT-TAGGCATACG-A-TG-T----TCATTC-CCAG-TCTAATAT-GG--GAC--CG
648 CCCGTCT--CTCTA-GCCGACGTAGTGCTCCGCCCACCCGCCCGCTCTTTTATCGGTTGGCTTAG
* * * * * ** *
11961037 G-A-CCGAGGGTTGCGA----CAG-C-AGGATC-GA-CAGCACGCAAAGGG-T--G-A-CCCGAC
710 GCATACG-GAGTT-C-ATTCCCAGTCTAAGATCGGACCA-AAC-C-GAGGGTTGCGTAGCAGGAT
* ** * * * *
11961087 CGATC--CCCG-GCTTGGGCATCCC-GCCCAT-CT-GGCTGGCTGAGCA-CCTG-CATGCTCGT-
769 CGA-CAGCACGTG-AGGGGGA-CCCGGTCGATCCTCGGCT---TGAGCATCCCGCCA--CTC-TA
* * * ** ** ***** * *
11961143 TTC-GTGGGTTTACTTGGCATACG-AAG-TTCATTCCCAGTC-TAA
825 GTCGGTGAG--CAC-CCGC--ACGCTCGTTTCATGGGTTGACTTAG
* * *
11961185 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * ** *
11961250 CTCGAGCATCTGTTGGTG-CTGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCACCGGAG
66 CTCGGGCATGTGTTGGTGCCACT-TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAG
* * * * *
11961314 AACCTGTCCGACGGCATTGGGGTTCCAGTGATCGGGCGGCTGGGAGGGGTGTGCGCGCATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG-GGC--GG-GGGGTGTGCGCACATGATGT
* * *
11961379 GCGATGGGAGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
*
11961444 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
11961509 TGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
* * * * *
11961574 GTGCACGCCAA-AAAAATACAAGGATCATGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAGAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* *
11961638 AATTTTAACAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
11961703 TGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
11961768 ATTCGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT-GCTTGC
* * * * *
11961833 GCATCCCGTCTCTCTGGTCGGCGTAGTGC-CCGCCCGCCCGCCTGCTCTTTTCATCGGTTGGCTT
644 GCATCCCGTCTCTCTAGCCGACGTAGTGCTCCGCCCACCCGCCCGCTCTTTT-ATCGGTTGGCTT
* * *
11961897 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGCTTGCGATAGCA
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCG-TAGCA
11961955 CATGCTGGGC
Statistics
Matches: 1348, Mismatches: 173, Indels: 162
0.80 0.10 0.10
Matches are distributed among these distances:
831 4 0.00
832 8 0.01
833 18 0.01
834 158 0.12
835 18 0.01
836 215 0.16
837 214 0.16
838 2 0.00
839 5 0.00
840 7 0.01
841 7 0.01
842 6 0.00
843 2 0.00
844 5 0.00
845 4 0.00
846 1 0.00
847 2 0.00
848 8 0.01
849 7 0.01
850 7 0.01
851 2 0.00
852 3 0.00
853 3 0.00
854 2 0.00
855 3 0.00
856 4 0.00
857 3 0.00
858 2 0.00
860 5 0.00
861 7 0.01
862 12 0.01
863 5 0.00
864 2 0.00
865 5 0.00
866 4 0.00
867 10 0.01
868 146 0.11
869 3 0.00
870 1 0.00
871 1 0.00
872 54 0.04
873 327 0.24
874 46 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (865 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCACTTTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGCTTGCGCATCCC
GTCTCTCTAGCCGACGTAGTGCTCCGCCCACCCGCCCGCTCTTTTATCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGTAGCAGGATCGACAGCACGTG
AGGGGGACCCGGTCGATCCTCGGCTTGAGCATCCCGCCACTCTAGTCGGTGAGCACCCGCACGCT
CGTTTCATGGGTTGACTTAG
Found at i:11961196 original size:26 final size:26
Alignment explanation
Indices: 11961159--11961211 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11961149 GGTTTACTTG
*
11961159 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
11961185 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
11961211 G
1 G
11961212 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:11962997 original size:707 final size:699
Alignment explanation
Indices: 11961185--11963376 Score: 2937
Period size: 714 Copynumber: 3.1 Consensus size: 699
11961175 CCCAGTCTAA
* * *
11961185 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
11961250 CTCGAGCATCTGTTGGTGCTGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCG-TCGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
11961315 ACCTGTCCGACGGCATTGGGGTTCCAGTGATCGGGCGGCTGGGAGGGGTGTGCGCGCATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGCT-GG-GGGGTGTGCGCACATGATGTG
* * * *
11961380 CGATGGGAGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCAC
*
11961445 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11961510 GGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTG
323 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
11961575 TGCACGCCAAAAAAATACAAGGATCATGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAGAAAA
388 TGCACGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
11961640 -TTTTAACAAAT-CTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 TTTTTAA-AAATCCT-GAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
*
11961703 TGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG--T--A--T---A---A-AAAAATGGC
* *** * *
11961768 ATTCGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGC
568 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGC
* * *
11961833 GCATCCCGTCTCTCTGGTCGGCGTAGT--GCCCGCCCGCCCGCCTGCTCTTTTCATCGGTTGGCT
633 GCATCCCGTCTCTCTGGTCGGCGTAGTCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
11961896 TAG
697 TAG
* *
11961899 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGCTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* *
11961964 CTCGGGCATGTGTTGGTGCCGTGTTTTTCTTCGTCGAGGCACAATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCG-GGCACCATCGTCGGAGCATCGCCGGAGA
* ** * ** * *
11962029 ACCTGACCGGCGAAATTGAGGTTCCGACGATCGGGTGGGCTGAGGGGGTGTGCACATATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGGTGATCGGG-GGGCTG-GGGGGTGTGCGCACATGATGTG
* *
11962094 CGATCGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTAT-CCTTCATCAAACCTCGAGAACTCA
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTT-ATCAAACCTCGAGAACTCA
* *
11962158 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
11962223 TGGGGATACTTTTTTCAAATGGCCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTT
322 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *
11962288 GTGCAGGCCAACAAAAATACAAGGATCACGTCTACCAAGCCTGGGGCCAAAACTCCTTCCAAAAA
387 GTGCACGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
11962353 AATTTTTAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCT
451 AATTTTTAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
* *
11962418 TGCCATTAAACTTCACGTGAAGTCTTAAGGGACCATTGTAT-AAAAAATGGCATTGGCACATAGA
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAAAAAATGGCATTGGCACATAGA
*
11962482 AATATGAAGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
581 AATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCT
*
11962546 CTGGTCGGCATAGCGCCCTCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
646 CTGGTCGGCGTA--G---T-CCGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
11962607 GCATACGGAGTTCATTCCCAGTTTAAGATCAAATCAGACCGAGGGTTGCGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * **
11962672 CTCGGGCCTGTGCTGGTGCCGTATTTTTCTTCACCGGTGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGG-GCACCATCGTCGGAGCATCGCCGGAGA
* * *
11962737 ACCTGACCGACGGCATTGGGGTTCTGGTGATCGGTGGGGTCTGGGGGTTATGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGGTGATCGG-GGGG-CTGGGGGGTGTGCGCACATGATGTG
*
11962802 CGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCAT
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCAC
*
11962866 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11962931 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTATAGCTGAATTTTTTTG
323 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
11962996 TGCATGCCAAAAAAAATACTAGGATCACGTATACCATGTTTGGGGCCAAAACTCCCTCCGAAAAA
388 TGCACGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
11963061 ATTTTAAAAAATCTTGAACCACAAAAAGTTTCCAAAATCGTGACAAATAAAAAACGAGTCGTCTT
452 ATTTTTAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
**
11963126 GCCATGAAACTTCACGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG--T--A--T---A---A-AAAAATGGCA
*** *
11963191 TTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCTTATCGATCCACGGCTTGCG
569 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCG
* **
11963256 CATCCCGTCTCTCTGGCCGGCGTAGTGCC-CCC-CCGCCCGCCCGCTCGTTTCGTCTCTTGGCTT
634 CATCCCGTCTCTCTGGTCGGCGTAGT-CCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
11963319 AG
698 AG
* * * ** *
11963321 GCATACGGAGTTCATTCCAAGTCTAAGATTGGACTGGACCGAGGGTTACGACAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCA
11963377 GGATCGACAG
Statistics
Matches: 1307, Mismatches: 135, Indels: 72
0.86 0.09 0.05
Matches are distributed among these distances:
700 49 0.04
701 41 0.03
702 2 0.00
705 1 0.00
707 310 0.24
708 219 0.17
709 6 0.00
711 2 0.00
713 7 0.01
714 421 0.32
715 142 0.11
716 11 0.01
717 3 0.00
720 2 0.00
721 42 0.03
722 49 0.04
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (699 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ACGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TTAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAAAAAATGGCATTGGCACATAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGT
CGGCGTAGTCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:11963517 original size:26 final size:26
Alignment explanation
Indices: 11963481--11963532 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11963471 TTGACTTGGA
11963481 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
11963507 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
11963533 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:11964558 original size:720 final size:714
Alignment explanation
Indices: 11963506--11964987 Score: 2250
Period size: 720 Copynumber: 2.1 Consensus size: 714
11963496 CCCAGTCTAA
* * *
11963506 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTCTCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT-TCGGCAGCACATGCTGGG
* * * * *
11963571 CTTGGGCATGTGCTGGTGCCGCATTTGTCTTCACCGAGGCACCATCGTCGGAGCATCGCCGGAGA
65 CTCGGGCAAGTGCTGGTACCACATTTGTCTTCACCGAGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
11963636 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCTCGGGGGGGTGTGCGCACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCAGCGATCGAGGGGGCTCGGGGGGGTGTGCACACATGATGT
* *
11963701 GTGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
195 GCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
11963766 CACCCCCTTAAAGACCATTTGAGATTTTATAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGACCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* *
11963831 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTG
325 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
* ***
11963896 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
* *
11963961 ATTTTAAAAAATCCCGAACCGCTAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGCCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGCCATCTT
* * *
11964026 GCCATTAAACTTCAAGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCA
* **
11964091 TTGGCATGCAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 TTGGAATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGC
* *
11964156 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCATCCTCCCGCCCGCTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCATAGTGCCC-CCC-T--GCCCGCCCGCTCGTTTCCTCGGTTGG
*
11964221 TTTAG
710 CTTAG
* *
11964226 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTACGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-CGGCAGCACATGCTGGG
* *
11964291 CTCGGGCAAGTGCTGGTACCACATTTTTCTTCACCG-GTGCACCATCGTCGGAGCATCATCGGAG
65 CTCGGGCAAGTGCTGGTACCACATTTGTCTTCACCGAG-GCACCATCGTCGGAGCATCACCGGAG
* * *
11964355 AACCTGACCGACGGCATTGGGGTTTCAGTGATCGATGGGG-TCGGGGGGGTTGTGCACACATGAT
129 AACCTGACCGACGGCATTGGGGTTCCAGCGATCGAGGGGGCTCGGGGGGG-TGTGCACACATGAT
* *
11964419 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
11964484 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGACCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
*
11964548 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAAATTTT
323 AAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
*
11964613 TTGTGCATGCCAAAAGAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
387 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
* ** ** * *
11964678 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCAT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGCCAT
*
11964743 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATG
517 CTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATG
*
11964808 GCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAACTT
582 GCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTT
* * * * *
11964873 GCGCATCCTGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCCTCGGTTTGCT
647 GCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCCCCTGCCCGCCCGCTCGTTTCCTCGGTTGGCT
11964938 TAG
712 TAG
* * * * *
11964941 GCATACAGAGTTCATTCCTAGTCTAAGGTTAGACCGGACTGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
11964988 GCGATAGTAG
Statistics
Matches: 690, Mismatches: 68, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
715 68 0.10
717 1 0.00
718 2 0.00
719 146 0.21
720 473 0.69
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCGGCAGCACATGCTGGGC
TCGGGCAAGTGCTGGTACCACATTTGTCTTCACCGAGGCACCATCGTCGGAGCATCACCGGAGAA
CCTGACCGACGGCATTGGGGTTCCAGCGATCGAGGGGGCTCGGGGGGGTGTGCACACATGATGTG
CGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGACCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGCCATCTTG
CCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCAT
TGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGC
ATCCCGTCTCTCTGGCCGGCATAGTGCCCCCCTGCCCGCCCGCTCGTTTCCTCGGTTGGCTTAG
Found at i:11966383 original size:903 final size:903
Alignment explanation
Indices: 11964226--11984388 Score: 23302
Period size: 904 Copynumber: 22.8 Consensus size: 903
11964216 GTTGGTTTAG
* * *
11964226 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTACGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * **
11964291 CTCGGGCAAGTGCTGGTACCACATTTTTCTTCACCGGTGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * ** * *
11964356 ACCTGACCGACGGCATTGGGGTTTC-AGTGATCGATGGGGTCGGGGGGGTTGTGCACACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATG
*
11964420 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
11964485 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
11964549 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAAATTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
11964614 TGTGCATGCCAAAAGAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
11964679 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11964744 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * **
11964809 CATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAACTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
11964874 CGCATCCTGTCTCTTTGGCCGGCGTAGT----GCCCGCCTGCCCGCCCGCTCGTTTCCTCGGTTT
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * ** *
11964935 GCTTAGGCATACAGAGTTCATTCCTAGTCTAAGGTTAGACCGGACTGAGGGTTGCGATAGTAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* *
11965000 TCGGTAGCACGCAGAGGGGACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
779 TCGGTAGCACGCAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
11965065 AGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGGGTTCATTCCCAATCTAA
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * *
11965125 GTGTACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** *
11965190 CTCGGGCATGTGCTGATGCCGCATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
11965255 ACCTGATCGGCGGCATTAGGGTTTTCGACGATC-GGGGGGCCGGGGGGGTGTGTGCACATGATGT
131 ACCTGACCGGCGGCATT-GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * * *
11965319 ACTATGGGTGCTGGTACATGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
11965384 CTCCCCCCTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
11965449 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
11965514 TTCCATGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
11965579 AA-TTAAAAAAATCCCGAACTGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
11965643 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
11965708 ATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
11965773 GCATCCCGTCTCTTTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTTGTTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
11965838 CTAAGCCATACGGAGTTCATTCCAAGTGTAAGATC-GAACCAAACCGAGGGTTGCGGTAGCAGGA
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGA
** * * *** *
11965902 TCGCCAGCACGTAGAGAGGGACACGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTT
779 TCGGTAGCACGCAGAG-GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** * ** *
11965967 GAATGCCCGCACGCTCATTTCGTGGGTTGACTTAGGGTTACGGAGTTCTTTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
11966028 GCATATGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTTGTGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
11966093 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
11966158 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* *
11966223 GCGATGCGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
11966288 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAATGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
11966352 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
11966417 CTGCAAGCC-AAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATT-CGAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAA
* ** * *
11966480 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
11966545 TTGCCGTGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * * *
11966610 CATCGGCACACAAAAATATGAAGATATGCCTAAACCCACCTACCACCATATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
11966675 CGCATCCCGTCTCTCTAGCCGGCGTAGTGCCTGCCCGCCTGCCCTCCCGCTCGTTTCGTTGGTTC
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** * * *
11966740 CCTTAGGCATACGGAGTTCATTCGTAGTCTAAGATCAGTCCAGACCGAGGGTTGTGGCAGCAAGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * ** * * * * *
11966805 TCGGCAACACATAGAGGGAGACCCGACAGATCTCAGGCTTGCGCATCCCACCCCTATGGCCGGCT
779 TCGGTAGCACGCAGAGGG-GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
11966870 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
11966931 GCATACGAAGTTCATTCCCAGTCTATGATCAGACCAGACCGAGGGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** ** * * *
11966996 CTCAGGCATGTGCTGGTGTTGCATTTTTCTTCGTTAGGACACCATCGCCGGAGCACCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
11967061 ACCTGACCGGCGGCATTGTGGTTCCGACGATCGGAGGGGCC-GGGGGGTGTACGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
11967125 CAATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACTCAG
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
11967190 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTAGCTGCTAGTAGCCATTAAAGTGT-TCGAAA
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAA
*
11967254 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
11967319 GTGCATGCCAATAAAAATACAAGGATCCCTTCTACCAATTTTAGGGCCAAAACTCCTTCTGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAA
* ** *
11967384 AAATTTTAAAAAATCCCGCAA-CGCAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
454 AAATTTTAAAAAATCCCG-AACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
11967448 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
11967513 GCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** ** *
11967578 GCGCATCCCGTCTCTCTGTACGGC-TAAGT----GCCCGCCTACCCGCCCGCTCGTTTCGCCGGT
648 GCGCATCCCGTCTCTCTGGCCGGCGT-AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* ** * *
11967638 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGTAGCAG
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
* ** * ** * *
11967703 GATCGATAGCACATAGAGGGGGACCCGACCGAACCATGGCTTGCGCATCCCACCCCTCTGGCCGA
777 GATCGGTAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
11967768 CTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCACAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11967831 G-AT-C---G---A-----A--C------C-GA----ACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11967870 CTCGGGCATATGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
11967935 ACCTTACCGGCGGCATTGGGGTTCTGATGATCGGGGGGGCCGAAGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* ** * * *
11968000 GCGATGGGAGCTGGTACTTGGCCCTTATATTCACCGCCAAACCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
11968065 CACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
11968130 TGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGGTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
11968195 GTGCATGCCAAAAAAATTACAAGGATCACATCT-CCATGTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * ** *
11968259 AATTATAAAAAATCCCAAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
11968324 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAGGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
11968389 ATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACGTACCACCCCAGCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
11968454 GCATCCCGTCTCTCTGGCCGACGTAGTGACCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT-G
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
11968518 ATTCGGGCATACGAAGTTCACTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGTAGTAGGA
715 CTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * * * *
11968583 TTGGTAGCATGTAGATGGGGACTCGACCGATCCTCAGCTTGCCCATCCCGCCCCTCTGGCCGGCT
779 TCGGTAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
11968648 GAGCGCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
11968709 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** * *
11968774 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCCTCACCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * *
11968839 ACCTGACCGGTTGCATTGGGGTTCCGATGATCGGGGGGGCC-GGGAGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
11968903 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ** *
11968968 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAAAGTCTAAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11969033 GGGGTCACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * ***
11969098 CACATGCCAAAAAAAATACAAGGATCATGTCTAATGAGTTTGGGGCCAAAACTCCTTCCGAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
* * * ** * *
11969163 AATTTAAAAAAATCCCGAGCCGCAAAAGGTTTCAAAAATCCTGAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
11969228 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
11969293 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATGGATCCACGACTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * ** ** * ** *
11969358 ACATCCCGTCTCTTTGGTTGGCATAGTGCCCGCTTGCCCGTGCACATGCTCGTTTCATCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * ** * * * *
11969423 CTTAGGCATACAGAGTTCATTCTCAGTCTAAGATCAGACTGGATCGGGGGTTACGGCAACAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * *
11969488 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCACCCTTCTGGCCGGCTG
780 CGGTAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * ***
11969553 AGCGTCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTTTAGTCTAA
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11969613 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
11969678 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCCTCGCCAGAGCTTCGTCGGGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA------CC--A------TC---G-
* *
11969743 ACCCTCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCGGACGAT-GGGGGGGC
113 ----TCG---GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
*
11969807 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTT-GCCCTTATATTGG-CCCCTAT
171 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
11969869 GCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
236 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
11969934 CAGTAGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
301 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
** * * * * * *
11969999 TCGAGTTTTTAGCTGAAAGTTTTTATGCATGCCAACAGAAATACAAGGATCACATCAACCAGGTT
366 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * ** *
11970064 TGGGGCCAAAACTCCTTTCGAGAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCA
431 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCG
* *
11970129 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
496 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * ** *
11970194 GAATTTACAAACCATACAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTGAACCCACCTA
561 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
11970259 CAACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCTGGCCGGCGTAGCG-CCGCCCGTCCGC
626 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * **
11970323 CCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACTG
691 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * *
11970388 GACCGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
756 GACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGC
* * *
11970453 GCATCCTG-CCC-CT------CTGA--------ACGCTCGTTTTGTGTGTTGACTTAGGCATACG
820 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
11970502 GAGTTCATTCCCAGTCTAA
885 GAGTTCATTCCCAGTCTAA
*
11970521 G-AT-C-G-G---A-T--C-G-----GATC-GA---G---GA---TTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
11970560 CTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCGCCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
11970625 ACCTAACCGACGGTATTAGGGTTCC-AGCGATAGGGGGGGCC-GGGGGGTGTGCACACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
11970688 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
11970752 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAACCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
11970817 TGGGGACACTTTTTTCAAAATGGTCACCAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
325 TGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
11970882 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCAAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * *
11970947 AAATTTTAAAAGATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* **
11971012 TTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTT
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
11971077 CATTGGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** * * * *
11971142 CGCATCCCATCTCTCTGGTCAGCGTAGTGATCGCCCGCCTGCCCGCCTGCTCATTTCATCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * * * *
11971207 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACGGTAGTAGAA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * ** * *
11971272 TTGGTAGCACGTAGAGGGGTACCTGACCAATCCCCAACTTGCGCATCCCACCCCTTTGGCCGGCT
779 TCGGTAGCACGCAGAGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
11971337 GAGCGCCCGCGCGCTCATTTCATGGGTTGATTTAGGCATACGGAGTTCATTCTCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
11971398 GCATACGAAGTTCATTCCCACTCTAAGATCGGATCGGTCAGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
11971463 CTCAGGCATGTGCTGGTGCCTAATTTTTCTTCCTTGGGGCACCA---T-----CA---CCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * ** * ** *
11971517 ACCTGACCAGG-GG-A-T---G-TGC-AC--TCATGATGTG-C-GATGGGTGCTG-GTAC-T--T
131 ACCTGACC-GGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGGTG-TGCGCACATGAT
* ** ** *
11971566 G-GC-------CCTTATA-TTGGCCC-CCTA-T--CCCTC-ATCAAACCTC--CAGAA-CTC-A-
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC---CCTCATCA-AACCTCGAG
* * * **** * * *
11971612 CACCCCCTTAAAGAGCAT-ATGAG-A--T-----TTTACATGTTTGCTGCCAGTAGCCATTAAAG
254 AACTCAC---ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
11971668 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACAGTTTGAGTTTTTAGCTG
316 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
11971733 AATTTTTTTGTGCATGACAAAAAAAATTCAAGGATCACATCTACCAAGGTTGGGGCCAAAACTCC
381 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* ** * * * *
11971798 TTCTGAAAAAATTTTAAAAAAATCTTGAAACACAAAAAGTTTCGAGAATCGTGAAAAATAGAAAA
446 TTCCGAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
* **
11971863 CGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGAATATTGTATGAATTTACAAGCCA
510 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * * **
11971928 TAAAACTGGTATTGGCACGCAAAAATATGAAGATGAGCCTAAATTCACCTACCACCCTATCGATC
575 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *** * ** * *
11971993 CACAGCTTGTGCATCCTACCTCTCTAGCCGATGTAGTGCCCGCCCGCCCGTCCGCCCACT-GATT
640 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCG-TT
* * * * * * *
11972057 TCATCGATTGGCTTAGGCATACGAAGTTCATTCCTAGACTCAGATCAGACCAGACTGAGGGTTGC
704 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
** * * * * * * * * *
11972122 AACCGCAAGATCGGTGGCATGCAGAGGGGGACTCGATCGATCCCCGGCTTGCACATTCCGCCCTT
769 GGCAGCAGGATCGGTAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
** * *
11972187 CTGGCCGGCTGAGAACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAG----TT--CA
833 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
11972246 ---T--
898 GTCTAA
* *
11972247 ---T-C------C--T---AGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
11972297 CTCAGGCATGTGCTGGTGCCG---TATT-TT--T--------C-T--TC---GC-T-G-C--AGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * ***
11972337 ACCTGACTGGCAGTATTGGGGTTCTGGCAATAAAGGGGGCCGAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* * *
11972402 CCGATGGTTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
11972467 CACCCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
11972532 TGGGGACA-TATTTTTCAAATGGTCACAAAATCTTGTAGACTTCAAGTTTTTAGCTGAATTTTTT
325 TGGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
11972596 TGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * *
11972661 AAATTATAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
11972726 TTGCCATTAAACTTCACGTGAAGGATTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
11972791 TATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACTCTATTGATTCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** * * * *
11972856 CGCATCCCGTCTCTTTGGTCGGCGTAGTGCCTGCCCGCCCGTTCGGCCACTCGTTTTGTCGGTTT
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *** * * * * *
11972921 TCTTAGGCATAC-GAGGTTCATT--CA-AAAAAGAT-TGCATCAAACTGAGGGTTGCAGCAGCAG
714 GCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAG
* * * *
11972981 GATCGGTAGCACGTAGAGGGGAACCCGACTGATCCCTTGGCTTGCACATCCCGCCCCTCTGGCCG
777 GATCGGTAGCACGCAGAGGGG-ACCCGACCGATCCC-CGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
11973046 GTTGAGTGCCTGCACGCTTGTTTCGCGGGTTGACTTAGGCATACGGAG-TCATTCCCAGTCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
11973109 GCATGCGGAGTTCATTCCTAGTCTAAGATCAGATCC-GACCAAGGGTTACGACAGCACATGCCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGAGGGTTGCGGCAGCACATGCTGG
** * ** *
11973173 GCTCGGGCATGTGCTGGTGTCATC-TTTTTCTTTGTCGGGGCAGTATCG-CTGGAGCATCACCGG
65 GCTCGGGCATGTGCTGGTG-CCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGG
* * *
11973236 AGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATGAA
128 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
*
11973301 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
11973366 CACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
11973431 AATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
11973496 TTGTGCATGCCAACAAAAATACAAGGATCACATCTATCAAGTTTGGTGCCAAAACTCCATCCGAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * *
11973561 AAAATTTTAAAAAATCCCGAACCGCAAAAAGGCTTGAAAATCGTAAAAAATAGAAAGCGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
11973626 CTTGCCATGAATCTTCACGTGAAGGCTTAAGGGACC-TGTATATGAATTTACAAGCCATAAAAAT
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT-TGTATGAATTTACAAGCCATAAAAAT
** * * * * * *
11973690 GGCATTGGCACACAAAAATATGACGATGTACCTAAACCCACCAACCGCCCTATCGATCCATGGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * * * * * *
11973755 TAAGCATCCCGTCTCTCTGGCCGACATAGTGCCCACCCTCCCACCCGCCCGTTCGTTTCGTCGGT
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
11973820 TGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCAG
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
* * * * * *
11973885 GATCGGTAGCACGTAGAACGGGACCCGATCAATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGG
777 GATCGGTAGCACGCAG-AGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
11973950 CTGAGCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
11974013 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGCACCAGACCAAAGGTTGCGGCAGCATACACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
11974077 GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCG-CAGGAGGATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGA
* * * *
11974141 GAACCTGACTGGCGACATTGGGGTTCCGACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * * * *
11974206 TGAGATGGGTACTGGTGCTTGGCCATTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
11974271 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
11974336 ATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * * *
11974401 TGTGTGTGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** *
11974466 AATTTTTAAAATATCCC-AGACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
454 AAATTTTAAAAAATCCCGA-ACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
11974530 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
11974595 GCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAGCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
11974660 GCGCATCCCATCTTTTTGGTCGGCATAGTGCCCGCCCGCCCG---G-TCGCTCGTTTCGTCGATT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * * *
11974721 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGTAGG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * *
11974786 ATCGGTAGCATGCAAAAGGGGA-CCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGC
778 ATCGGTAGCACGC-AGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
11974850 TGAGCG-CCG-TCGCTCG-TTCGTGGGTTTGACTTAGTGCATACGGAGTTCATT-CCAGTCTTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGG-TTGACTTAG-GCATACGGAGTTCATTCCCAGTC-TAA
* * * * * * *
11974911 GCATACAGAGTTCATT-CCAGTCT-AGATCAAACC-AACTGAGGGTTGTGGTACCACAATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAC-ATGCTGG
* * * * *
11974973 GCTC-GGCAATGTGATGGTG-CGCATTTTTCTTCGCCTGGGCACCATCGTCGAAGCATCACCGGA
65 GCTCGGGC-ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * *
11975036 GAACCTG-CAGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCCGAGGGGGT-TACGCACATGAT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGGTGTGCGCACATGAT
* * * *
11975099 ATGTGATTGGTGCTGGTACTTGGCCCTTATATTGG-CCTCTA-CCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
11975162 CACACCCCCTTATAGTAGCATTTGAGATTTTACAGGTTTACTGCCAGGTAGCCATT-AAGTTGTT
258 CACACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCA-GTAGCCATTAAAG-TGTC
* * * *
11975226 TAAAATGGGGACATTTTTTTCAATTTGGTCAC-AAATCTTGGTA-ACTTCGAG-TTTTAGCTTAA
320 TGAAATGGGGACACTTTTTTCAA-ATGGTCACAAAATCTT-GTACACTTCGAGTTTTTAGCTGAA
** *
11975288 TTTTTTT-TGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGCTCCAAAAATCCTT
383 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * * * *
11975351 TCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAATTTAGAAAATTGTGAAAAATAGAAAACGA
448 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
* * *
11975416 GTCGTCTTGCGATGTAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
513 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* ** * *
11975481 AAATGGCATTGGCATGCAGAAATATGAAGCTACGCCTAAACCCACCTACCGCCCTATCGATCCAT
578 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* ** *
11975546 GGCTTGCGCATCTCGTCTCTCTGGCCAACGTAGT--------GCCCGCCTGCCCGCTCGTTTCGT
643 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * ** * *
11975603 CAGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGA-CTGAACCGAGGGTTGCAGC
708 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGC
* * *
11975667 AGCAGGATCGGTAGCACGCAGAGGTGGACCC-AGTCGAAT-CCCAGCTTGCACATCCCGCCCCTC
772 AGCAGGATCGGTAGCACGCAGAGG-GGACCCGA-CCG-ATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * * *
11975730 TGGCCAGTTGACCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
834 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
11975795 TCTAA
899 TCTAA
* *
11975800 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG-GGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG-CAGCACATGCTGG
* ** *
11975864 GCTCGAGCATGTGCTGGTGCCGTGTTTTTCTTCGTCGGGGTACCAT-GTCGGAG--T--------
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
11975918 -ACCTAACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATCATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
11975981 GCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
11976046 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
11976111 TGGGGACATTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGCA-TTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
11976175 GTCCATGCCAAAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
11976240 AATTTTAAAAAATCCTGAA-TGACAAAAAGTTTTAAAAATCGTGAAAAATAG-AAACGAGTCATC
455 AATTTTAAAAAATCCCGAACCG-CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
11976303 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
11976368 CATTGGCATGCAGAAATATGAAGATGTGTCTATGCCCACCTCCCACCCTATCGATCCAAGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
11976433 TGCATCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCCTGCCCGCTTGTTTCGTCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
11976490 GCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * * * **
11976555 TTGGCAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCTTCTGGCTAGCT
779 TCGGTAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
11976620 GAGCTCCCGTACG--C---TC----G-T---TTA---AT--GG-GTTGA----C--T-TAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11976655 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
11976720 GTCGGGCATGTGCTGGTGCTACATTTTTTTTCGTCGGGGCACCA----C----CA---CCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * * *
11976774 ACCTGACCGACGGCATTGGGGTTCCGGTGA-CTGGCGGGTC--GGGGGTGTGCGCACAT-ATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
11976835 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
11976900 ACCCCCTTAAAGAGCATTTGAGATTTTACCGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11976965 GGGGACATTTTTTTTAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
11977030 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
11977095 ATTTTAAAAAATCTCGAACAGTAAAAA-TTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTT-GAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
11977159 TGCCACGAAACTTCACGT--A-----AAGGGACCACTGTATGAATTTACAAGCCACAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * **
11977217 ATTGGCATGTAGAAATATAAAGATGTACCTAAA-CCACCTACCACCCTATTGATCCATAGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * * *
11977281 GCATCCCATCTCTCTGGCCGGCGTAGT----GCCTACCAGCACGCCCGCTCATTTTGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
11977342 CTTAGGCATATGGATTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
11977407 CGATAGCACG-AAAGGGGGCCCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGACTG
780 CGGTAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
11977471 AGCACCCGCACGCTCGTTT--T--G-TG-----GG--T--TGAG----TT---AG-----
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11977505 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
11977570 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
11977635 ACCTGACAGGCGGCATTGGGGTTTCGGCGATC-AGGGGGCC-----GG-G-G-G-----G-TGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
11977685 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
11977750 AACCCCTTAAAAAGGATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11977815 GGGG-CACTTTTTTCAAATGATCACAAAATCTTTTACA-TATCGTGTTTTTAGCTGAATTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTT
* * * * *
11977878 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCAAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * *
11977943 AATTTAAAAAAATCTTGAACCG-TAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
11978007 TGCCATAAAACTTCACGTGAAGGCTTAAGGAACCATTGTATAAATTTAAAAGCCATAAAAAAGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
11978072 ATTGGCATGCAGAAATATGAAAATGTGTCTAAGCTCACCTCCCACACTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
11978137 GTATCTCGTCTCTCTGGCTGGCGTACTGTCGGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** *
11978202 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGTAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * ** * *
11978267 CGGCATCACGCAGAAGGGGACCCGGTCGATCCTCTGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
780 CGGTAGCACGCAG-AGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
11978332 AGCGCCCGCACGCTCATTTCATGAGTTGAGTTAGGCATACGAAGTTCATTCCCAGTCTAA
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
11978392 G-AT--TG-G---A---CC-G-----G---A-A-C--A---AGGGCTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11978431 CTCGGGCATGTGCTGGTGCCGCACTTTTATTCGCCGGGGCACCATTGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
11978496 ACCTGA-CGGCGGCATTGTGGTTCCGGCGATC-GGGGGGTC----GGG-G-G-G-----G-TGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
11978546 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCGAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
11978611 ACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11978676 GGGG-CACTTTTTTCGAACGGTCA-AAAATCTTGTACA-TATCGAGTTTTTAGCTGCATTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTT
* *
11978738 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
11978803 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAGTAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
11978868 TGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * ** * * * *
11978933 ATTGGCATGTAGAAATATGAAGATGTGTCTATGCCCACCTCCCACCCTATCAATTCACGGCTTGT
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
11978998 GCATCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCCTGCCCGCTTGTTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
11979055 CTTAGGCACACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGACAGCAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
11979120 CGGCAGCATGCAGAGGGGGACCC-AGTCGATCCCCGACTTGCGCATCCCGCCCTTCTCGCCGGCT
780 CGGTAGCACGCAGA-GGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * ** * *
11979184 GAGCTCCCACACACTCGTTTAATGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
11979245 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11979310 CTCGGCCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
11979375 ACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGTCGAGCGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
** * * * *
11979440 ATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAGCCTTGAAAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
11979505 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
11979570 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
11979635 ATGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** * * * * *
11979699 AATTTTCAAAAGTCTTGAATCGTAAAAACTTTTGAAAA-CGTGAAAAATAGATAATGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
11979763 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
11979828 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
11979893 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTTGATTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * ** * * *
11979958 CTGAGGCATACGGAGTTCATTCCTAGTCTAAGATCTTACCAGACCGAGGGTTGCAGAAGCAAGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
** * * * *
11980023 CGACAGCACGCAGAGGAGGACCCGATCGATCCCCAGCTT-CTGCATCCCGCCCCTCTAGCCAGCT
780 CGGTAGCACGCAGAGG-GGACCCGACCGATCCCCGGCTTGC-GCATCCCGCCCCTCTGGCCGGCT
* * *
11980087 GAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGCGTACGGAGTTCATTCCCAATCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ***
11980148 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTTACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
11980213 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
11980278 ACCTGACTGGCGGGATTGGGGTTCCGACGATCGGGGGGG-CGGAGGGGTGCGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
11980342 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
11980407 ACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTGAAAGTGTCTGAA
261 A-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCTGAA
*
11980472 ATGGGGACAC-TTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
11980535 TGTGCATGCC-AACAAAGTACAAGGATCACGTCTA-CGAGTTTGGGGCCAAAACTCGTTTCGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
11980598 AAATTTTAAAAAATCCTGAA-CGCAAAAAG-TTT-AAAATCGTGAAAAATAG-AAACGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11980659 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
11980724 CATTGGCACACAGAAATATG-A-A-GTGCCTAAA-CCACCAACCACCCCGATCGATCCACGGCTT
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACGGCTT
* * * *
11980785 GACGCATCCCGTC-CTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCACCCGCTCATTTCATCGGT
648 G-CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* *
11980849 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAG
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
* * * * * *
11980914 GATCTGTAGCACAG-AGAGGGGGACCCGATCGATCCCCGGCTTGCGTATCTCGTCCCTCTGTCCG
777 GATCGGTAGCAC-GCAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
11980978 GCTAAGCACCCGTACGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTATAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11981042 GCATACGGAGTCCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
11981107 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCCGCCGGAGTATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-CGTCGGAGCATCGCCGGAG
* * * *
11981172 AACCTGACC-GCGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGTGGTGTTCGTACATGAAT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATG-AT
* * *
11981235 GTGCGATGGCTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
11981300 CACACCCCCTTAAGGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCGGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
11981365 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
11981430 TTGTGCATGACAACAAAAATAAAAGGATCACGTCTACCATGTTTGGGGCCAAAAATCCTTCTGAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*** **
11981495 AAAATTTTAAAAAAT-CCGAAACTATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
453 AAAATTTTAAAAAATCCCG-AACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
11981559 TCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * *
11981623 AACATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * * * * * *
11981688 TGTGCATTCAGTCTCTCTAGCCGACGTAGTGCCCGTCCGTCCACCCGCCTGTTCGTTTTGTCGAT
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
** * * * * *
11981753 TGGCTTAGGCATACTTAGTTCGTTCCCAGCCTAAGAT-TGTACCAGACCGAGGGTTACGGTAGC-
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCA
* *
11981816 --A----T-GCA--AAG-GGGGACCC-AGCCGATCCCTGGCTTG-GACATCCCGCCCCTCTGGCC
776 GGATCGGTAGCACGCAGAGGGGACCCGA-CCGATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCC
* *
11981869 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATATGGAGTTCATT-CC---C--A
839 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
11981928 --AT-C-----T-A---ACA-TC---G---A-ACCGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
11981973 CTCGGGCATTTGCTGGTGTCGCATTTTTCTTCATTGGGGCACCATC-TCCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-CGGAGCATCGCCGGAG
* * * *
11982037 AACCTGACCGGCGGAATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGCGTGTGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
11982102 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
11982167 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
11982232 TGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTC-AGTTCTTAGCTGAATTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTT
*
11982296 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
11982361 AAACTTTAAAAAATCTCGAACCACAAAAAGTTTTG-AAATCATGAAAAATAGAAAATGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
11982425 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATTAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
11982490 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTT
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
11982555 CGCATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCATTTCGTCTGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * *** * *
11982620 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGTAGCAGAA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * ** * *
11982685 TCGGCAGCACGCAAAGTGGG-CCTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTTTGGCCGGC
779 TCGGTAGCACGCAGAG-GGGACC-CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
11982749 TGAGCTCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11982807 -C-TA---AG---------A-TC------C-GACCAGACCGAGGGTTGTGGCAGCACATCCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
11982850 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTC--GG-AGCATCGT-------T----GGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
11982901 ACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCC-AGGGGGTGTTCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
11982965 CGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCTTCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
11983030 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11983095 GGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
11983160 TGAATGCCAACAAAAATACAAGGATCACATCTA-CAAGTTTGGGGCCGAAACTCCTTCCGAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * **
11983224 GCTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
11983289 GCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTATATGAATTTAGAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * * * * *
11983354 TTGGTACGCAGAAATATAAACATGTGCATAAACCCAGCTACCACCCTATTGATACACGGCTTACG
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
11983419 CATCCCGTCTCTCTGGCCAGCGTAGAGCCCG---G-CCGCCCACCTGCTCGTTTCGTCAGTTGGC
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
11983480 TTAGGCATACGGAGTTCATTCCCAGTCTACGATCAGACCAGACTGAGGGTTGCGACAGTAGGATC
716 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * *
11983545 GGTAGCACGTAGAGGGGCACCCGACTGATCCTCGGCTTGCTCATCCCACCCCTTTGTCCGGCTGA
781 GGTAGCACGCAGAGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
11983610 GCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
11983669 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTTCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11983734 CTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGCCGGACCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * **
11983799 ACCTGACCGACGTCATTGGGGTTCCGATGATCAAGGGGG-C-GGGGGGTGTGCGCACATGATGT-
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
11983861 -GA---------G-A--T-G----------GG-----T-GCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * * *
11983896 ACCCGTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
11983961 GTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGGTTTTTAGCTGAATTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTT
** * * *
11984025 GTGCATGCCAACCAAAATACAACGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * * *
11984090 AACATTTAAAAAATCCTGAATCGCAAAAATTTTTGAAAATCATGAAAAATAGAAAACTAATCGTC
455 AA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
11984155 TTGCCTTGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** *
11984220 CATTGGCATGCAGAAATATGAAGATGTGCCTACACCCACCTACCACCCTATCGATCCGTGACTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
11984285 CGCATCCTGTCTCTTTGGCCGGCCTAGTGCCCGCCTGCCCGCCCGCCCGCCCGCTTGTTTCATCG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCG
*
11984350 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
710 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
11984389 TGGATCGGCA
Statistics
Matches: 16535, Mismatches: 2142, Indels: 1197
0.83 0.11 0.06
Matches are distributed among these distances:
819 2 0.00
820 13 0.00
821 1 0.00
822 3 0.00
825 1 0.00
826 1 0.00
827 1 0.00
828 3 0.00
829 2 0.00
830 4 0.00
831 12 0.00
832 1 0.00
834 62 0.00
835 1 0.00
837 1 0.00
839 1 0.00
842 4 0.00
843 7 0.00
844 2 0.00
845 6 0.00
846 6 0.00
847 64 0.00
848 119 0.01
849 137 0.01
850 291 0.02
851 139 0.01
852 69 0.00
853 382 0.02
854 361 0.02
855 356 0.02
856 87 0.01
857 45 0.00
858 229 0.01
859 228 0.01
860 938 0.06
861 696 0.04
862 415 0.03
863 51 0.00
864 60 0.00
865 492 0.03
866 289 0.02
867 52 0.00
868 204 0.01
869 11 0.00
870 8 0.00
871 13 0.00
872 9 0.00
873 9 0.00
874 323 0.02
875 31 0.00
876 289 0.02
877 256 0.02
878 198 0.01
879 110 0.01
880 138 0.01
881 380 0.02
882 191 0.01
883 21 0.00
884 68 0.00
885 6 0.00
886 20 0.00
887 92 0.01
888 37 0.00
889 41 0.00
890 28 0.00
891 291 0.02
892 186 0.01
893 75 0.00
894 500 0.03
895 520 0.03
896 189 0.01
897 246 0.01
898 409 0.02
899 378 0.02
900 354 0.02
901 745 0.05
902 693 0.04
903 1453 0.09
904 1670 0.10
905 21 0.00
906 1 0.00
907 2 0.00
908 45 0.00
910 2 0.00
916 4 0.00
918 2 0.00
922 2 0.00
923 2 0.00
924 125 0.01
925 203 0.01
926 197 0.01
927 13 0.00
928 48 0.00
929 42 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
GGTAGCACGCAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11966942 original size:26 final size:26
Alignment explanation
Indices: 11966905--11966955 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11966895 GTTGACTTAG
11966905 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11966931 GCATAC-GAAGTTCATTCCCAGTCTA
1 GCATACAG-AGTTCATTCCCAGTCTA
11966956 TGATCAGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11968719 original size:26 final size:26
Alignment explanation
Indices: 11968683--11968735 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11968673 GTTGACTTAG
11968683 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11968709 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11968735 G
1 G
11968736 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11969740 original size:25 final size:25
Alignment explanation
Indices: 11969706--11969764 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
11969696 CCGCATTTTT
11969706 CTTCGTCGGGGCACCCTCGCCAGAG
1 CTTCGTCGGGGCACCCTCGCCAGAG
11969731 CTTCGTCGGGGCACCCTCGCCAGAG
1 CTTCGTCGGGGCACCCTCGCCAGAG
*
11969756 CATCGTCGG
1 CTTCGTCGG
11969765 AGAACCTGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.12, C:0.39, G:0.32, T:0.17
Consensus pattern (25 bp):
CTTCGTCGGGGCACCCTCGCCAGAG
Found at i:11971402 original size:26 final size:26
Alignment explanation
Indices: 11971372--11971424 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11971362 GTTGATTTAG
* * *
11971372 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
11971398 GCATACGAAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
11971424 G
1 G
11971425 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:11971587 original size:860 final size:859
Alignment explanation
Indices: 11969815--11984388 Score: 13322
Period size: 860 Copynumber: 16.7 Consensus size: 859
11969805 GCCGGGGGGT
* * *
11969815 GTGCGCACATGATGTGCGATGGGTGCTGGCACTT-GCCCTTATATTGG-CCCCTATGCCTCATCA
1 GTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
11969878 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
11969943 TTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
** * * * * *
11970008 TAGCTGAAAGTTTTTATGCATGCCAACAGAAATACAAGGATCACATCAACCAGGTTTGGGGCCAA
196 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * ** *
11970073 AACTCCTTTCGAGAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTCAAAAATCATGAAAAATA
261 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATA
* *
11970138 GAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
326 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * ** * *
11970203 AACCATACAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTGAACCCACCTACAACCCTAT
391 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
11970268 CGATCCACGGCTTCCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCGCCCGTCCGCCCGCCCTCTC
456 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTC
* **
11970333 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACTGGACCGAGGGT
521 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * *
11970398 TGCGGTAGCAGGATCGATAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTG-C
586 TGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC
* *
11970462 CC-CT------CTGA--------ACGCTCGTTTTGTGTGTTGACTTAGGCATACGGAGTTCATTC
651 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
11970512 CCAGTCTAAG-AT-C-G-G---A-T--C-G----GATC-GA--G---GA---TTGCGGCAGCACA
716 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGATCGGACGGACAGAGGGTTGCGACAGCACA
* * * *
11970553 TGCTAGGCTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCGCCATCGCCGGAGCATCG
781 TGCTGGGCTCGGGCATGTGCTGGTGCC-TATTTTTCTTCGTCGGGGCACCAT-------GCAT--
*
11970618 CCGGAGAACCTAACCGACGGTATTAGGGTTCCAGCGATAGGGGGGGCCGGGGGG
836 CCGGAGAACCTGACC-A--G-----GGG----A--G-T---------------G
* *
11970672 TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATC
1 -GTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
11970736 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAACC
65 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
11970801 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAATGGTCACCAAATCTTGTACACTTCGAGTT
130 ATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
11970866 TTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACC
194 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * **
11970931 AAAAATCCTTCCAAAAAAATTTTAAAAGATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
259 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAA
* * *
11970996 TAGAAAATGAGTCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
324 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** ** *
11971061 CAAGCCATAAAAATTTCATTGGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCT
389 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * *
11971126 ATCGATCCATGGCTTGCGCATCCCATCTCTCTGGTCAGCGTAGTGATCGCCCGCCTGCCCGCCTG
454 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCG
* * **
11971191 CTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAG
518 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * * * * * **
11971256 GGTTACGGTAGTAGAATTGGTAGCACGTAGAGGGGTACCTGACCAATCCCCAACTTGCGCATCCC
583 GGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC
* * * * * *
11971321 ACCCCTTTGGCCGGCTGAGCGCCCGCGCGCTCATTTCATGGGTTGATTTAGGCATACGGAGTTCA
648 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
11971386 TTCTCAGTCTAAGCATACGAAGTTCATTCCCACTCTAAGATCGGATCGGTCAGAGGGTTGCGACA
713 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AGATCGGA-CGGACAGAGGGTTGCGACA
* * *
11971451 GCACATGCTGGGCTCAGGCATGTGCTGGTGCCTAATTTTTCTTCCTTGGGGCACCAT-CA-CCGG
776 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCT-ATTTTTCTTCGTCGGGGCACCATGCATCCGG
11971514 AGAACCTGACCAGGGGA-T-
840 AGAACCTGACCAGGGGAGTG
*
11971532 GTGCACTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
1 GTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
11971597 AACCTCCAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACATGTTTGCTGCCAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
11971662 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACAGTTTGAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * *
11971727 TAGCTGAATTTTTTTGTGCATGACAAAAAAAATTCAAGGATCACATCTACCAAGGTTGGGGCCAA
196 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* ** * * * *
11971792 AACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAAACACAAAAAGTTTCGAGAATCGTGAAAAAT
261 AACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
* **
11971857 AGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGAATATTGTATGAATTTAC
325 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * * **
11971922 AAGCCATAAAACTGGTATTGGCACGCAAAAATATGAAGATGAGCCTAAATTCACCTACCACCCTA
390 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *** * ** * *
11971987 TCGATCCACAGCTTGTGCATCCTACCTCTCTAGCCGATGTAGTGCCCGCCCGCCCGTCCGCCCAC
455 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGC
* * * * * * *
11972052 T-GATTTCATCGATTGGCTTAGGCATACGAAGTTCATTCCTAGACTCAGATCAGACCAGACTGAG
519 TCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
** * * * * * * *
11972116 GGTTGCAACCGCAAGATCGGTGGCATGCAGAGGGGGACTCGATCGATCCCCGGCTTGCACATTCC
583 GGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC
* ** * *
11972181 GCCCTTCTGGCCGGCTGAGAACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCA
648 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
11972246 TTCCTAG--T---C-TA---AG---------A-TC-AGATCGGAC---C-GAGGGTTGC-AGCAG
713 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGATCGGACGGACAGAGGGTTGCGA-CAG
* **
11972286 CACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGCTGCAGAACCTGACTGGCAGT
777 CACATGCTGGGCTCGGGCATGTGCTGGTGCC-TATTTTTCTTCG-T-C-G-----G---GGCACC
** * * *** * *
11972351 ATTGGGGTTCTGGCAATAAAGGGGGCCGAGGGGGGT-
830 A-T--GCATCCGG--A-GAACCTGACC-AGGGGAGTG
* * * *
11972387 GTGCGCACATGATGTCCGATGGTTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
1 GTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
11972452 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
11972517 TTAAAGTGTCTGAAATGGGGACA-TATTTTTCAAATGGTCACAAAATCTTGTAGACTTCAAGTTT
131 TTAAAGTGTCTGAAATGGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
11972581 TTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
195 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * ** *
11972646 AAACTCCTTCCAAAAAAATTATAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCGTGAAAAAT
260 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
* * * *
11972711 AGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAGGATTAAGGGACCGTTGTATGAATTTAC
325 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
11972776 AAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACTCTA
390 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * ** * *
11972841 TTGATTCACGGCTTGCGCATCCCGTCTCTTTGGTCGGCGTAGTGCCTGCCCGCCCGTTCGGCCAC
455 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCGCCCGCCCGCCCGC
* ** *** * * * *
11972906 TCGTTTTGTCGGTTTTCTTAGGCATAC-GAGGTTCATT--CA-AAAAAGAT-TGCATCAAACTGA
519 TCGTTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCAG-ACCAGACCGA
* * * * *
11972966 GGGTTGCAGCAGCAGGATCGGTAGCACGTAGAGGGGAACCCGA-CTGATCCCTTGGCTTGCACAT
582 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATC-GATCCC-CGGCTTGCGCAT
* * * * *
11973030 CCCGCCCCTCTGGCCGGTTGAGTGCCTGCACGCTTGTTTCGCGGGTTGACTTAGGCATACGGAG-
645 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * *
11973094 TCATTCCCAGTCTAAGCATGCGGAGTTCATTCCTAGTCTAAGATCAGATCCGACCA-AGGGTTAC
710 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AGATCGGA-CGGA-CAGAGGGTTGC
* * * *
11973158 GACAGCACATGCCGGGCTCGGGCATGTGCTGGTGTCATCTTTTTCTTTGTCGGGGCAGTATCGC-
772 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCTATTTTTCTTCGTCGGGGC---A-C-CA
11973222 TGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGAGGCCGGGGGGG
831 T---GCAT--CCGGAGAACCTGA----C--CA---GGG----GA-G-T----------------G
* * *
11973287 TGTGCGCACATGAAGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATC
1 -GTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
11973352 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCTAGTAGCC
65 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
11973417 ATTAAAGTGTTTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
130 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
11973482 TTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTATCAAGTTTGGTGCCA
195 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** *
11973547 AAACTCCATCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGGCTTGAAAATCGTAAAAAAT
260 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
* * *
11973612 AGAAAGCGAGTCGTCTTGCCATGAATCTTCACGTGAAGGCTTAAGGGACC-TGTATATGAATTTA
325 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT-TGTATGAATTTA
** * * * * *
11973676 CAAGCCATAAAAATGGCATTGGCACACAAAAATATGACGATGTACCTAAACCCACCAACCGCCCT
389 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** * * * * *
11973741 ATCGATCCATGGCTTAAGCATCCCGTCTCTCTGGCCGACATAGTGCCCACCCTCCCACCCGCCCG
454 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCG
* * * *
11973806 TTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACTGAG
518 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * ** * *
11973871 GGTTGCGACAGCAGGATCGGTAGCACGTAGAACGGGACCCGATCAATCCTCGGCTTGCGCATCCC
583 GGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC
* * *
11973936 GCCCCTCTAGCCGGCTGAGCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
648 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
11974001 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGCACCAGACCA-AAGGTTGCGGC
713 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AGATCGGA-CGGA-CAGAGGGTTGCGAC
* ** * **
11974065 AGCATACACTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCAGGA
775 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TATTTTTCTTCGTCGGGGCACCAT-GC----
11974130 GGATCGTCGGAGAACCTGACTGGCGACATTGGGGTTCCGACGATCGGAGGGGTCGGGGGGG
834 --ATC--CGGAGAACCTGA----C--CA----------G--G---GGA---GT-------G
* * * * * *
11974191 TGTGCGCACATGATGTGAGATGGGTACTGGTGCTTGGCCATTATATTGGCCCCTTATCCCTCATC
1 -GTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
11974256 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
65 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
11974321 ATTAAAGTGTCTGCAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTT
130 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
** * *
11974386 TTAGCTGAATTTTTTTGTGTGTGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
195 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * **
11974451 AAACTCCTTCTGAAAAATTTTTAAAATATCCC-AGACCGCAAAAAGTTTCAAAAATCGTGAAAAA
260 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA-ACCGCAAAAAGTTTTGAAAATCGTGAAAAA
*
11974515 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
324 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
11974580 CAAGCCATAAAAATGGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
389 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * **
11974645 ATCGAGCCACGGCTTGCGCATCCCATCTTTTTGGTCGGCATAGT---GCCCGCCCGCCCGGTCGC
454 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGC
* * * * *
11974707 TCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGG
519 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * * * ** *
11974772 GTTGTGGTAGTAGGATCGGTAGCATGCAAAAGGGGA-CCGGCCGATCCCTGGCTTGCGCATCCCG
584 GTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
*
11974836 CCCCTCTGGCCGGCTGAGCG-CCG-TCGCTCG-TTCGTGGGTTTGACTTAGTGCATACGGAGTTC
649 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG-TTGACTTAG-GCATACGGAGTTC
* ** ** * * **
11974898 ATT-CCAGTCTTAAGCATACAGAGTTCATT-CCAGTCTAGATCAAACCAACTGAGGGTTGTGGTA
712 ATTCCCAGTC-TAAGCATACGGAGTTCATTCCCAGTCTAGATCGGACGGACAGAGGGTTGCGACA
* * * *
11974961 CCACAATGCTGGGCTC-GGCAATGTGATGGTGCGC-ATTTTTCTTCGCCTGGGCACCATCGTCGA
776 GCAC-ATGCTGGGCTCGGGC-ATGTGCTGGTGC-CTATTTTTCTTCGTCGGGGCACCA---T---
11975024 AGCATCACCGGAGAACCTGCAGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCCGAGGGG
832 -GCAT--CCGGAGAACCTG-A--C--CA---GGG----GA-G-T----------------G
* * * * * *
11975085 GTTACGCACATGATATGTGATTGGTGCTGGTACTTGGCCCTTATATTGG-CCTCTA-CCCTCATC
1 G-TGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
11975148 AAACCTCGAGAACTCACACCCCCTTATAGTAGCATTTGAGATTTTACAGGTTTACTGCCAGGTAG
65 AAACCTCGAGAACTCACACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCA-GTAG
* * * *
11975213 CCATT-AAGTTGTTTAAAATGGGGACATTTTTTTCAATTTGGTCAC-AAATCTTGGTA-ACTTCG
128 CCATTAAAG-TGTCTGAAATGGGGACACTTTTTTCAA-ATGGTCACAAAATCTT-GTACACTTCG
*
11975275 AG-TTTTAGCTTAATTTTTTT-TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGG
190 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
** * * * * * * * *
11975337 CTCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAATTTAGAAAATTGTGA
255 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGA
* * *
11975402 AAAATAGAAAACGAGTCGTCTTGCGATGTAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAA
320 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* ** *
11975467 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGCTACGCCTAAACCCACCTACCG
385 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * ** *
11975532 CCCTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCCAACGTAGT-------GCCCGCCTGC
450 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGC
* * * ** *
11975590 CCGCTCGTTTCGTCAGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGA-CTGAAC
515 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-AC
* * * *
11975654 CGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGTGGACCC-AGTCGAAT-CCCAGCTTGCA
579 CGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-TCG-ATCCCCGGCTTGCG
* * * * * *
11975717 CATCCCGCCCCTCTGGCCAGTTGACCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGG
642 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
11975782 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT
707 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AGATCGGA-CGGACAGAGGGTT
* * * *
11975847 GGGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTGTTTTTCTTCGTCGGGGTACCATG-
770 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TATTTTTCTTCGTCGGGGCACCATGC
*
11975911 -T-CGGAGTACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG
834 ATCCGGAGAACCT----GAC--CA---GGG----GA-G-T---------------G
* * *
11975965 TGTGCGCACATCATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1 -GTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
11976030 AAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
65 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
11976095 ATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTT
130 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
11976160 TTAGCTGCA-TTTTTTGTCCATGCCAA-AAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCC
195 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
11976223 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA-TGACAAAAAGTTTTAAAAATCGTGAAAA
259 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-CAAAAAGTTTTGAAAATCGTGAAAA
*
11976287 ATAG-AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
323 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* ** *
11976351 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGTCTATGCCCACCTCCCACCC
388 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
11976416 TATCGATCCAAGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGT-------GCCCGCCTGCCCG
453 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCG
* * * * *
11976474 CTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAG
518 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * *
11976539 GGTTGCGACAGCAGGATTGGCAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCC
583 GGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC
* ** * * ** * *
11976604 GCCCTTCTGGCTAGCTGAGCTCCCGTACGCTCGTTTAATGGGTTGACTTAAGCATACAGAGTTCA
648 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
11976669 TTCCCAGTCTAAG-AT-C-G-G---------A--C-----CGGAC---C-GAGGGTTGTGACAGC
713 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGATCGGACGGACAGAGGGTTGCGACAGC
* * *
11976710 ACATGCTGGGGTCGGGCATGTGCTGGTG-CTACATTTTTTTTCGTCGGGGCACCA-CCA-CCGGA
778 ACATGCTGGGCTCGGGCATGTGCTGGTGCCT--ATTTTTCTTCGTCGGGGCACCATGCATCCGGA
*
11976772 GAACCTGACCGACGGCATTGGGGTTCCG
841 GAACCTGACC-A-GG----GGAG-T--G
*
11976800 GTGACTGGCGGGTCGGGGGTGTGCGCACATATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
1 GTG-C--GC---TC------AT--G-----ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
11976865 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACC
47 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * * *
11976930 GATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTTAAATGGTCACAAAAG
112 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
11976995 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
177 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
11977060 CTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACAGTAAAAA-TT
242 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
* * * *
11977124 TTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCACGAAACTTCACGT--A-----AAGG
307 TT-GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * * *
11977182 GACCACTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGTAGAAATATAAAGATGTACCT
371 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* ** *
11977247 AAA-CCACCTACCACCCTATTGATCCATAGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGT---
436 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
** * * * * * *
11977308 GCCTACCAGCACGCCCGCTCATTTTGTCGGTTGGCTTAGGCATATGGATTTCATTCCCAGTCTAA
501 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
11977373 GATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGATAGCACG-AAAGGGGGCCCCGACCGATC
566 GATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATC
* * * * * *
11977437 CCTGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTTGTGGGTTGAGT
631 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
11977502 TAGGCATATGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC-AGA-C---CGGA
696 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGATCGGACGGA
* * * *
11977543 CAGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCAGG
761 CAGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TATTTTTCTTCGTCGGG
* *
11977608 GCACCATCACCGGAGCATCGTCAGAGAACCTGA-CAGGCGGCATTGGG
825 GCACCAT-------GCATC--CGGAGAACCTGACCAGG-GG-A--GTG
* * *
11977655 GTTTCGGCGATCAGGGGGCCGGGGGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 G--T--GCGCTCA----------TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * * *
11977720 CCTATCCCTCATCAAACCTTGAGAACTCACAACCCCTTAAAAAGGATTTGAAATTTTACAGGTTT
52 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
11977785 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG-CACTTTTTTCAAATGATCACAAAATCTTTT
117 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
11977849 ACA-TATCGTGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTAC
182 ACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * ** * *
11977913 CATGTTTGGGGCAAAAACTCCTTCCAAAAAAATTTAAAAAAATCTTGAACCG-TAAAATTTTTGA
246 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGA
* *
11977977 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGAACCA
311 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * * * * *
11978042 TTGTATAAATTTAAAAGCCATAAAAAAGGCATTGGCATGCAGAAATATGAAAATGTGTCTAAGCT
376 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * * * * *
11978107 CACCTCCCACACTATCGATCCACGGCTTGCGTATCTCGTCTCTCTGGCTGGCGTACTGTCGGCCC
441 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCC
* *
11978172 GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
505 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * * * * *
11978237 AGACCAGACCGAGGGTTGCGATAGTAGGATCGGCATCACGCAGAAGGGGACCCGGTCGATCCTCT
570 AGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCG
* * * *
11978302 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGAGTTGAGTTAGG
635 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
11978367 CATACGAAGTTCATTCCCAG--T---C-TA---AG---ATT----G----GACCGGA---ACA-A
700 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGATCGGACGGACAGA
* * * * * *
11978408 GGGCTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCACTTTTATTCGCCGGGGCAC
765 GGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TATTTTTCTTCGTCGGGGCAC
11978473 CATTGCCGGAGCATCGCCGGAGAACCTGA-C-GGCGGCATTGTG
829 CA-T------GCAT--CCGGAGAACCTGACCAGG-GG-A--GTG
** * *
11978515 GTTCCGGCGATCGGGGGGTCGGGGGGGTGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCC
1 G-T---GCG--C------TC---ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
11978580 CCCTATCCCTCATCGAACCTTGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTT
51 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
11978645 TGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGG-CACTTTTTTCGAACGGTCA-AAAATCTTG
116 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
11978708 TACA-TATCGAGTTTTTAGCTGCATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTA
181 TACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
11978772 CCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTG
245 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTG
* *
11978837 AAAATCGTGAAAAGTAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACC
310 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * **
11978902 ATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGTAGAAATATGAAGATGTGTCTATGC
375 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
11978967 CCACCTCCCACCCTATCAATTCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGT-------
440 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCC
* * *
11979025 GCCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCTAAGATC
505 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
11979090 AGATCGGATCAAGGGTTGCGACAGCAGGATCGGCAGCATGCAGAGGGGGACCC-AGTCGATCCCC
570 AGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-TCGATCCCC
* * * * * * ** *
11979154 GACTTGCGCATCCCGCCCTTCTCGCCGGCTGAGCTCCCACACACTCGTTTAATGGGTTGACTTAA
634 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
11979219 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
699 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AGATCGGA-CGGAC
* * * * *
11979284 CGAGGGTTGTGATAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCGTATTTTTCTTCATCGGGG
762 AGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TATTTTTCTTCGTCGGGG
11979349 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGG
826 CACCA---T----GCATC--CGGAGAACCTGA----C--CA---GGG-------GA--------G
11979414 TCGAGCGGGG
858 T--------G
* ** *
11979424 TGTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATC
1 -GTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
11979489 AAGCCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
65 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
11979554 ATTAAATTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTT
130 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
11979619 TTAGCTGAATTTTTTTATGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCA
195 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * ** * * *
11979683 AAACTCCTTCCGAAAAAATTTTCAAAAGTCTTGAATCGTAAAAACTTTTGAAAA-CGTGAAAAAT
260 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
* *
11979747 AGATAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
325 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
11979812 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
390 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
*
11979877 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCAC
455 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGC
* * * * **
11979942 TCGTTTCGTTGATTGGCTGAGGCATACGGAGTTCATTCCTAGTCTAAGATCTTACCAGACCGAGG
519 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * ** * *
11980007 GTTGCAGAAGCAAGATCGACAGCACGCAGAGGAGGACCCGATCGATCCCCAGCTT-CTGCATCCC
584 GTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC-GCATCCC
* * * *
11980071 GCCCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGCGTACGGAGTTCA
648 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * **
11980136 TTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTTACA
713 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AGATCGGA-CGGACAGAGGGTTGCGACA
11980201 GCACATGCTGGGCTCGGGCATGTGCTGGTG-CTGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
776 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCT--ATTTTTCTTCGTCGGGGCACCA---T----
11980265 GCATCGTCGGAGAACCTGACTGGCGGGATTGGGGTTCCGACGATCGGGGGGGCGGAGGG
832 GCATC--CGGAGAACCTGAC---C---A---GGG----GA-G-T--------------G
* *
11980324 GTGCGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
1 GT--GCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
11980389 CAAACCTCGAGAACTCACACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAG
64 CAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
11980454 CCATTGAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCATAAAATCTTGTACACTTCGAG
128 CCATT-AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
11980518 TTTTTAGCTGAA-TTTTTTGTGCATGCCAAC-AAAGTACAAGGATCACGTCTA-CGAGTTTGGGG
192 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
11980580 CCAAAACTCGTTTCGAAAAAATTTTAAAAAATCCTGAA-CGCAAAAAG-TTT-AAAATCGTGAAA
257 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAA
11980642 AATAG-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
322 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* ** *
11980706 TACAAGCCATGAAAATGGCATTGGCACACAGAAATATG-A-A-GTGCCTAAA-CCACCAACCACC
387 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-C
* * *
11980767 CCGATCGATCCACGGCTTGACGCATCCCGTC-CTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCA
451 CCTATCGATCCACGGCTTG-CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCG
* * *
11980831 CCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
514 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * *
11980896 CGAGGGTTGCGGCAGTAGGATCTGTAGCACAG-AGAGGGGGACCCGATCGATCCCCGGCTTGCGT
579 CGAGGGTTGCGGCAGCAGGATCGGTAGCAC-GCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * * * * *
11980960 ATCTCGTCCCTCTGTCCGGCTAAGCACCCGTACGGTCGTTTCGTGGGTTGACTTAGGCATATGGA
643 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * * *
11981025 GTTCATTCCCAGTATAAGCATACGGAGTCCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTA
708 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AGATCGGA-CGGACAGAGGGTTG
*
11981090 C-AGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCC
771 CGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TATTTTTCTTCGTCGGGGCACCAT--
11981154 GCCGGAGTATCGCCGGAGAACCTGACCGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGTG
832 G-C-----AT--CCGGAGAACCTGA---C--CA-----G----GG-GA--------------GTG
* * *
11981219 GTGTTCG-TACATGAATGTGCGATGGCTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTA
1 GTG--CGCT-CATG-ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
11981283 ATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTA
62 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
11981348 GCCATTAAAGTGTCGGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
127 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
11981413 TTTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATAAAAGGATCACGTCTACCATGTTTGGGG
192 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *** **
11981478 CCAAAAATCCTTCTGAAAAAATTTTAAAAAAT-CCGAAACTATAAAAAGTTTCAAAAATCGTGAA
257 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG-AACCGCAAAAAGTTTTGAAAATCGTGAA
11981542 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAAT
321 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** *
11981606 TTACAAGCCATAAAAATAACATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCAC
386 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * * * *
11981671 CCTATCGATCCACAGCTTGTGCATTCAGTCTCTCTAGCCGACGTAGTGCCCGTCCGTCCACCCGC
451 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGC
* * * * ** * * *
11981736 CTGTTCGTTTTGTCGATTGGCTTAGGCATACTTAGTTCGTTCCCAGCCTAAGAT-TGTACCAGAC
515 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGAC
* * * *
11981800 CGAGGGTT-----------A-CGGTAGCATGCAAAGGGGGACCC-AGCCGATCCCTGGCTTG-GA
579 CGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCG-
* *
11981851 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATATGG
642 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
11981916 AGTTCATTCCCAATCTAA-CAT-C---G---A-----A--C-----CGGAC---C-GAGGGTTAC
707 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGATCGGACGGACAGAGGGTTGC
* * *
11981957 GACAGCACATGCTGGGCTCGGGCATTTGCTGGTGTCGC-ATTTTTCTTCATTGGGGCACCATCTC
772 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-C-CTATTTTTCTTCGTCGGGGCACCA--T-
11982021 CGGAGCATCGTCGGAGAACCTGACC-GGCGGAATTGGGGTTCCGG
832 ----GCATC--CGGAGAACCTGACCAGG-GG-A-----G-T---G
11982065 CGATCGGGGGGGCCGGGGGCGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
1 -G-T-------G-C----GC---T-----CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
11982130 ATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
44 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
11982195 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAA
109 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
11982260 AATCTTGTACACTTTC-AGTTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
174 AATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
11982324 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAACTTTAAAAAATCTCGAACCACAAAA
238 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
* *
11982389 AGTTTTG-AAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
303 AGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
11982453 AGGGACCTTTGTATGAATTTACAAGCCATTAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
368 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* *
11982518 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGCATCCCGTCTCTATGGCCGGCGTAGT
433 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * * *
11982583 GCCCGCCCGCTCGCCCGCCCGCTCATTTCGTCTGTTGGCTTAGGCATATGGAGTTCATTCCCAGT
498 G-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* *** * * * * * *
11982648 CTAAGATCGGATTGGACCGAGGGTTGCGGTAGCAGAATCGGCAGCACGCAAAGTGGG-CCTCGGT
562 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACC-CGAT
* * * *
11982712 CGATCCCCGGCTTGTGCATCCCGCCCCTTTGGCCGGCTGAGCTCCCGCACGCTTGTTTCGTGGGT
626 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
11982777 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--CG---A----C---C---A---G
691 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGATCGG
* * * *
11982822 AC---C-GAGGGTTGTGGCAGCACATCCTGTGCTCGGGCATGTGCTGGTGTCGC-ATTTTTCTTC
756 ACGGACAGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-C-CTATTTTTCTTC
* ** * * * ** *
11982882 GTCGGAGCATCGTTGGAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGG
819 GTCGGGGCA-CCAT---G--CAT--CCGG-AG-A-------ACC--TGA-C-CAGGGG--A-GTG
* * * *
11982947 GTGTTCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCTT
1 GTG--CGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
11983012 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
64 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
11983077 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTT
129 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
11983142 TTTAGCTGAATTTTTTTGTGAATGCCAACAAAAATACAAGGATCACATCTA-CAAGTTTGGGGCC
194 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* ** * **
11983206 GAAACTCCTTCCGAAAAAGCTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATCGTGAAAAA
259 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAA
* *
11983271 TAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTATATGAATTTA
324 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * * * *
11983336 GAAGCCATAAAAATGGCATTGGTACGCAGAAATATAAACATGTGCATAAACCCAGCTACCACCCT
389 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * * *
11983401 ATTGATACACGGCTTACGCATCCCGTCTCTCTGGCCAGCGTA--G-AGCCCGGCCGCCCACCTGC
454 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGC
* * *
11983463 TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTACGATCAGACCAGACTGAGG
519 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * * *
11983528 GTTGCGACAGTAGGATCGGTAGCACGTAGAGGGGCACCCGA-CTGATCCTCGGCTTGCTCATCCC
584 GTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCC
* * * *
11983592 ACCCCTTTGTCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
648 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
11983657 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTTCGACA
713 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AGATCGGAC-GGACAGAGGGTTGCGACA
*
11983722 GCACATGCTGGGCTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAC
776 GCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TATTTTTCTTCGTCGGGGCACCAT-----G--
* ** *
11983787 CATCGCCGGAGAACCTGACCGACGTCATTG
833 CAT--CCGGAGAACCTGACC-AGGGGAGTG
* * * * * *** * ***** *
11983817 G-G-GTTC-CGATGAT-C-AAGGGGGCGGGGGGTGTGCGCAC--ATGATGTGAGATGGGT-GCCC
1 GTGCGCTCATGATG-TGCGATGGGTGCTGGTACT-TG-GCCCTTAT-AT-TG-GCCCCCTATCCC
* ** *
11983874 TCATCAAACCTCAAGAACTCACACCCGTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG
60 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
11983939 TAGCCATTAAAATGTTTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-
125 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
11984003 AGGTTTTTAGCTGAATTTTTTTGTGCATGCCAACCAAAATACAACGATCACGTCTACCAAGTTTG
190 A-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * * *
11984068 GGGCAAAAAATCCTTCCGAAAAAACATTTAAAAAATCCTGAATCGCAAAAATTTTTGAAAATCAT
254 GGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGT
* * * * *
11984133 GAAAAATAGAAAACTAATCGTCTTGCCTTGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATG
318 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
11984198 AATTTACAATCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTACACCCACCTAC
383 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
** * * * *
11984263 CACCCTATCGATCCGTGACTTGCGCATCCTGTCTCTTTGGCCGGCCTAGTGCCCGCCTGCCCGCC
448 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCC-GCCCGCC
* * *
11984328 CGCCCGCCCGCTTGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
508 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
11984389 TGGATCGGCA
Statistics
Matches: 11562, Mismatches: 1495, Indels: 1300
0.81 0.10 0.09
Matches are distributed among these distances:
833 1 0.00
834 56 0.00
835 5 0.00
837 3 0.00
838 1 0.00
839 8 0.00
840 1 0.00
841 2 0.00
842 6 0.00
843 1 0.00
845 8 0.00
846 5 0.00
847 52 0.00
848 118 0.01
849 138 0.01
850 292 0.03
851 157 0.01
852 70 0.01
853 389 0.03
854 342 0.03
855 420 0.04
856 59 0.01
857 3 0.00
858 230 0.02
859 284 0.02
860 994 0.09
861 706 0.06
862 403 0.03
863 3 0.00
864 66 0.01
865 482 0.04
866 256 0.02
867 33 0.00
868 189 0.02
869 14 0.00
870 12 0.00
871 5 0.00
872 11 0.00
873 5 0.00
874 16 0.00
875 2 0.00
876 74 0.01
877 272 0.02
878 14 0.00
879 93 0.01
880 125 0.01
881 425 0.04
882 126 0.01
883 8 0.00
884 64 0.01
885 14 0.00
886 7 0.00
887 98 0.01
888 36 0.00
889 45 0.00
890 35 0.00
891 282 0.02
892 197 0.02
893 71 0.01
894 455 0.04
895 490 0.04
896 191 0.02
897 229 0.02
898 96 0.01
899 65 0.01
900 174 0.02
901 645 0.06
902 145 0.01
903 469 0.04
904 741 0.06
905 12 0.00
906 3 0.00
909 3 0.00
910 2 0.00
911 2 0.00
912 2 0.00
913 2 0.00
914 1 0.00
916 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (859 bp):
GTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
TGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC
CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGATCGGACGGACAGAGGGTTGCGACAGCACA
TGCTGGGCTCGGGCATGTGCTGGTGCCTATTTTTCTTCGTCGGGGCACCATGCATCCGGAGAACC
TGACCAGGGGAGTG
Found at i:11973118 original size:25 final size:26
Alignment explanation
Indices: 11973084--11973135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11973074 GTTGACTTAG
11973084 GCATACGGAG-TCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
11973109 GCATGCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11973135 G
1 G
11973136 ATCAGATCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11974016 original size:26 final size:26
Alignment explanation
Indices: 11973987--11974039 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11973977 GTTGACTTAG
11973987 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11974013 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11974039 G
1 G
11974040 ATTGCACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11975810 original size:26 final size:26
Alignment explanation
Indices: 11975774--11975826 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11975764 GTTGACTTAG
11975774 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11975800 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11975826 G
1 G
11975827 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11979256 original size:26 final size:26
Alignment explanation
Indices: 11979216--11979271 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
11979206 TGGGTTGACT
11979216 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
11979242 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
11979268 TAAG
1 TAAG
11979272 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:11980161 original size:26 final size:26
Alignment explanation
Indices: 11980125--11980174 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11980115 GACTTAGGCG
11980125 TACGGAGTTCATTCCCAATCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
* *
11980151 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
11980175 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:11981052 original size:26 final size:26
Alignment explanation
Indices: 11981016--11981068 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11981006 GTTGACTTAG
* *
11981016 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTCCATTCCCAGTATAA
* *
11981042 GCATACGGAGTCCATTCCTAGTCTAA
1 GCATACGGAGTCCATTCCCAGTATAA
11981068 G
1 G
11981069 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTATAA
Found at i:11983679 original size:26 final size:26
Alignment explanation
Indices: 11983643--11983695 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11983633 GTTGACTTAG
11983643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11983669 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11983695 G
1 G
11983696 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11985243 original size:26 final size:26
Alignment explanation
Indices: 11985192--11985244 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11985182 GTTGACTTAG
* *
11985192 GCATACGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATTCCCAACCTAA
*
11985218 GCATAAGGAGTTCATTCCCAGCCTAA
1 GCATAAGGAGTTCATTCCCAACCTAA
11985244 G
1 G
11985245 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAACCTAA
Found at i:11986125 original size:25 final size:26
Alignment explanation
Indices: 11986090--11986140 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
11986080 GTTGACTTAG
11986090 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11986116 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11986141 TATCGGACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11986762 original size:897 final size:897
Alignment explanation
Indices: 11985020--11992242 Score: 9010
Period size: 897 Copynumber: 8.1 Consensus size: 897
11985010 CTAGGCATTT
* * *
11985020 TCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTG-AGG
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCA-G
** * * * * *
11985084 TAGCAGGATCGACAGCACACAGAGGGGGACTTGGCCGATCCCTGGCTTGCGCATCTCGCCCCTTT
65 TAGCAGGATCGACAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * ** *
11985149 GGCCGACTGAGCGCTTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
130 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
11985214 CTAAGCATAAGGAGTTCATTCCCAGCCTAAGATCGGACTGGACCAAGGGTTGCGGCAACACATAC
195 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * ** *
11985279 TAGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGCT
260 TGGGCTCGGGCAT-TGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCT-GGAGCATCGCC
* * * * *
11985343 GGAGAACCTGATCGGCGGCTTTAGGGTTCCGGTGATCGGGGGGGCCGGGAGGTGTGCGCACATGA
323 GGAGAACCTGA-CCGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
*
11985408 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTTGAGAAC
387 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
11985472 TCACAACCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTACCAGTAGCCGTTAAAGTGTCTG
452 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
11985537 AAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
517 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
11985602 TTTGGGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTCGGGACCAAAAATCCTTACGA
582 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
** * * *
11985667 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATTATGAAAACTAGAAAACAAGTCG
647 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
11985732 TCTTGCTATGAATCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
712 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
11985797 GGCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
777 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
11985862 TGCGCATTCCGTCTCTCTGGCCGACATAGTGCACGCCCACCCGCCCGCTCGTTTCG
842 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
** *
11985918 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGT
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGT
* *
11985983 AGCAGGATCGATAGCACGTAGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTG
66 AGCAGGATCGACAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * *
11986048 GCGGGCTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
131 GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * **
11986113 TAAGCATA-GGAGTTCATTCCCAGTCTAATATCGGACCGGACCGAGGGTTCCAACAGCACATGCT
196 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * * *
11986177 GGGCTCGAGCATTTTCTGGTGTCGCATTTTTCTTCGCCAGGTCACCATCGCTGGAGCATCGCCGG
261 GGGCTCGGGCATTGT-TGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCGCCGG
* * *
11986242 AGAACGTCACCGCGGCATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
325 AGAACCTGACCGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* *
11986307 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTC
389 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
11986372 ACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAATGTGTCTGAA
454 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
11986437 ATGGTGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
519 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
11986501 TGTGAATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCGAAAA-TCATTCCGAA
584 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAA
* *
11986565 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
648 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
11986630 CTTGCCATGAAACATCACGTGAAGGTTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATG
713 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
11986695 GCATTGGCATACAAAAATATGAAAATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTT
778 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
11986760 GCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCG-CCGCCGCGCTCGCTTCGTTTCG
843 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-CGCCCGC-TCGTTTCG
* * ** * *
11986816 TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACAGC
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGT
* * * * * *
11986881 AGCAGGATCGGCAGCA-GCAGAGGGGGAC-CTGGCCAATCCCCAAG-TTACGCAT-CCGCCCCTC
66 AGCAGGATCGACAGCACGTAGAGGGGGACTC-GGTCGATCCCC-GGCTTGCGCATCCCGCCCCTC
*
11986942 TGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
129 TGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
11987007 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGAT
194 TCTAAGCATACGGAGTTCATTCCCAGTCTAAG---ATCG-G---A----C---C-------GGA-
* * *
11987072 CAGATCGAGAGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGGGCCGCATTTTTCTTCAC
237 C----CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT-TGTTGGTGCCGCATTTTTCTTCAC
* * * * * * *
11987137 CGGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGACGGCGGCATTGCGGTTTCGACGATCGGG
297 CGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGCGGCATTGGGGTTCCGGCGATCGGG
11987202 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
362 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
11987267 CTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTG
427 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
11987332 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
492 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
**
11987397 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGGAAAATACAAGGATCACGTCTACCA
557 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * **
11987462 AGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCT-AAAAGTTTTGAA
622 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCAAA
* * *
11987526 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCCTGAAACTTCACGTCAAGGCTTAAGGGACCGT
686 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
11987591 CGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
751 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
* * * * *
11987656 ACCTACCACCCTATCGATCGACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTCCCCGCCCG
816 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
* ** **
11987721 TCCGTTCGCTCGTTTTA
881 CCCGCCCGCTCGTTTCG
* * * **
11987738 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGG-CCAAGGGTGGTGG
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGAGGGTTGCAG
** * ** * *
11987802 TAGCAGGATCGGTAGCACGTAGAGGGGCACTCGACCGATCCCCGGCATGCGCATCCCACCCCTCT
65 TAGCAGGATCGACAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
11987867 GGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCGCAGT
130 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* ** **
11987932 CTAAGCATACGGAGTTCATTCCCAGTCTCAA-ATCAGACCAAACCGAGGGTTATGGCAGCACATG
195 CTAAGCATACGGAGTTCATTCCCAGTCT-AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* * ** * *
11987996 CTAGGCTCGGGCACGTGTTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGCTTGAGCATCGTC
259 CTGGGCTCGGGCA-TTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCGCC
* * * * * * ** *
11988060 AGAGAACCTGACGGCGGCATTGCGGTTTCGGTGATCAGAAGGGCCGGGGGGTGTGCCCACATGAT
323 GGAGAACCTGACCGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* ** *
11988125 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCATGCCTTGAGAACT
388 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
11988189 CACACCCCCTTAGAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TG
453 CACACCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
11988252 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
517 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
11988317 TTTGTGCATGCCAAAAAAAATACAAGGATCACATCTAGCAAGTTTGGTGCCAAAAATCCTTTCGA
582 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-
** *
11988382 AAAAAATTTTAAAAAAATCCCGAACCGT-AAAAGTTTCAAAAATTGTTAAAAATAGAAAACGAGT
646 AAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
11988446 CATCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
710 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
**
11988511 ATGGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGT
775 ATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
11988574 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCACCCGTCCGGCCGCTCGTTTCG
838 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C--CCGCTCGTTTCG
* ** * * ** * * * *
11988638 TCGGCTGGCTTAGGCATACAAAGTTCATTGCTAGTCTAAGATTGGACCGGACTGAGGGTTACGGC
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGT
* * * * * * * * **
11988703 AGCAAGATTGGCAGCATGTAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATTCCTTCCCTCTG
66 AGCAGGATCGACAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* *
11988768 GCCGGCTGAGCACCCGCACGCACGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
131 GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
11988833 TAAG-AT-C--AG---------A--C------C-G---GG-CCGAGGGTTGCGGCAGCACATGCT
196 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* ** **
11988872 GGGCTCGGGCTTGTGTTGGTGCCGCATTTTT-TTCATTGGGGCACCATCGC-GGAGCATCGCCAA
261 GGGCTCGGGCAT-TGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCGCCGG
* * *** **
11988935 AGAACCTGACCGGCGACATTGGGATTCCAATGATCGGATGGGCCGGGGGGGTGTGCGCACATGAT
325 AGAACCTGACC-GCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGAT
* * * **
11989000 GTGCGATAGGTGCTGGTAGTTGGACCTTATATTTTCCCCCTATCCCTCATCAAACCTCGAGAACT
388 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
11989065 CACACCCCCTTAAAAAGCTTTTAAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGA
453 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * * *
11989130 AAT-GGGACACTTTTTTGAAAAGGTCAAAAAATCTTATACACTTCGAGTTTTTGGCTTAATTTTT
518 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
11989194 TTATGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
583 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
11989259 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
648 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
11989324 CTTGCCATGAAACTTCACGTGAAGGATTAAGGCACCATTGTATGAGTTTACAAGCCATAAAAATG
713 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
11989389 GCATTGGCAGGCAAAAATAT-AGAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCT
778 GCATTGGCATGCAAAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
11989453 TGCGCATCACGTATCTCTGGCC-A-GTA-TAG--TGCCCGCCCGCCCGCTCGTTTCG
842 TGCGCATCCCGTCTCTCTGGCCGACGTAGT-GCCCGCCCGCCCGCCCGCTCGTTTCG
* ** * * ** * * *
11989505 TCAGTTGGCTTAGGCATACAAAGTTCATTCTCTGTCTAAGATTGGATCGGACCGAGGGTTGCGGC
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGT
** * **
11989570 AGCACCATCGATAGCACACAGAGGGGGAC-CTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
66 AGCAGGATCGACAGCACGTAGAGGGGGACTC-GGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
** * * * *
11989634 GGCCAACCGAGCACCCGCACACTCGTTTCGTGGG-TGACTTAGGCATACAGAGTCCATTCCCAGT
130 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
11989698 CTAAGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGTTTGTGGTAGCACATGC
195 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * **
11989763 TGGGCTTGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATTG-TCGGAGCGTCATC
260 TGGGCTCGGGCAT-TGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCT-GGAGCATCGCC
* *
11989827 GGAGAACCTGA-C-C-G-A---------CGGCAATC-GGGGGGCCTGGAGGGGTGTGCACACATG
323 GGAGAACCTGACCGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GG-GGGGTGTGCGCACATG
**
11989878 ATGTGCGATGCATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
386 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
11989943 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
451 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
11990008 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCT-AAATT
516 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
11990072 TTTTGTGCATGCCAACAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTTC
581 TTTTGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * * * *
11990137 GAAAAAATTTAAAAAAATCTCGAACTGCAAGAATTTTCAAAAATCATGAAAAATAGAAAATGTGT
645 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
11990202 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAA
710 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * *
11990267 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
775 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * **
11990332 CTTGCGCATCCCATCTCTCTGGCCTG-TGTAGTGCCCGCCGCCGCTCGTTCGCTCGTTTCG
840 CTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCG-C-CCGCCCGCCCGCTCGTTTCG
* * * * * *
11990392 TCGGTTGGTTTAGGTATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTAGT
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGT
* **
11990457 AGCAGGATCGACAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCATGCCCCTCTG
66 AGCAGGATCGACAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
11990522 GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
131 GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * *
11990587 TAAGCATACAGAGTTCATTCGCAGTCTAAGATCGGGCCAGATCGAGGGTTACGGTAGCACATGCC
196 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * *
11990652 GGGCTC--G-A-----------GCA----TCGT---CGGAGCACCATCG-TCGGAGCATCGTCGG
261 GGGCTCGGGCATTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCT-GGAGCATCGCCGG
* * * * *
11990695 TGAACCTAACTGGCGGCATTAGGGTT-CGGCGATC-GGGGGG-C-GGGGGTGTACGCACATGATG
325 AGAACCTGAC-CGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* ** * *
11990756 TGTGATGGGTGCTATTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAAGTC
389 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
11990821 ACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACAATTAAAGTGTCTGAA
454 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * * *
11990886 ATGAGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAAGTTGACTTTTTT
519 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
11990951 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT--GGCCAAAACTCCTTTCGAAA
584 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
11991014 AAATTTTAAAAAAT-CCGAACAGCAAAAAGTTTCAAAAGTCATGAAAAATAAAAAACGAGTCGTC
649 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
11991078 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAACTTACAAGCCAAAAAAATGG
714 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
11991143 CATTGGCATGCAGAAATATGAAGATGTACC-AAATCCCACCTACCACCCTATTGATCCACGGCTT
779 CATTGGCATGCAAAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCACGGCTT
* * * *
11991207 GCGCATCCCGTCTTTCTGGTCGGCGTAGTGCCCG-CCGCCCGCCTGCTCGTTTCG
843 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * * * *
11991261 TTGGTTGGCTTAGGAATACGGAGTTTATTTCTAGTCTGAGATC-GAACTGGACCGAGGGTTGCAG
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCAG
* * * ** * * *
11991325 CAGCAGAATCGATAGCACACAGAGGGTGACTCGGTCGATCCCCAGCTTGTGCATCCCGCCCCTCT
65 TAGCAGGATCGACAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * * * *
11991390 GGCAGACCGAGCACCCGCACGCTCGTTTCATGGGTTAACTTACGCATACAGAGTTCATTCCTAGT
130 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* ** * * * *
11991455 CTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGATAGGACGGAGGGTTGTGGCAGTACAGGC
195 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * *
11991520 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCG
260 TGGGCTCGGGCAT-TGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCGCCG
* * *
11991585 GAGAACCTGACCAGCGGCATTAGGGTTTCGACGATC--GGGGGCCGAGGGGG-GTGCGCACATGA
324 GAGAACCTGACC-GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGA
* *
11991647 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGACAAC
387 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
11991712 TCACA-CCCCTTAAAGAGCATTTGAGATTTCACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
452 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
11991776 AAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
517 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * **
11991840 TTTGTGCATGCC-AACAAAATAGAAGGATCACGTCTACCAAGTTTTGGGGCTAAAACTCCTTCTA
582 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCG
* * *
11991904 AAAAAATTTT-TAAAATCCCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
646 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
11991968 GTCTGGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAA
711 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
11992033 TGGCATTGGCCATGC-AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
776 TGGCATTGG-CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
11992097 CTTACGCAT-CCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCTCGTTTTG
840 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG--CTCGTTTCG
* ** * *
11992156 TCGGTT-GCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGATTGGACCGAGGGTCGCGGT
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGT
*
11992220 AACAGGATCGACAGCACGTAGAG
66 AGCAGGATCGACAGCACGTAGAG
11992243 TTTTTAGCTG
Statistics
Matches: 5480, Mismatches: 675, Indels: 344
0.84 0.10 0.05
Matches are distributed among these distances:
866 66 0.01
867 148 0.03
868 2 0.00
869 241 0.04
870 3 0.00
871 13 0.00
872 187 0.03
873 64 0.01
874 104 0.02
875 447 0.08
876 210 0.04
877 8 0.00
878 2 0.00
879 23 0.00
880 161 0.03
881 288 0.05
882 1 0.00
883 4 0.00
884 4 0.00
885 3 0.00
886 2 0.00
887 154 0.03
888 92 0.02
889 1 0.00
890 27 0.00
891 114 0.02
892 149 0.03
893 282 0.05
894 96 0.02
895 137 0.03
896 398 0.07
897 659 0.12
898 403 0.07
899 6 0.00
900 176 0.03
901 1 0.00
902 1 0.00
903 1 0.00
904 1 0.00
908 1 0.00
910 1 0.00
911 1 0.00
913 1 0.00
917 1 0.00
918 3 0.00
919 1 0.00
920 1 0.00
921 2 0.00
922 230 0.04
923 452 0.08
924 105 0.02
925 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGT
AGCAGGATCGACAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCGCCGGA
GAACCTGACCGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
Found at i:11987022 original size:26 final size:26
Alignment explanation
Indices: 11986986--11987064 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
11986976 GTTGACTTAG
*
11986986 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
11987012 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
11987038 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
11987064 G
1 G
11987065 ATTGGATCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:11987463 original size:923 final size:913
Alignment explanation
Indices: 11986090--11988836 Score: 3738
Period size: 923 Copynumber: 3.0 Consensus size: 913
11986080 GTTGACTTAG
11986090 GCATACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAATATCGGACCGGACC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAA-AT-GGA-C-GA-C
* ** * * * *
11986155 GAGGGTTCCAACAGCACATGCTGGGCTCGAGCAT-TTTCTGGTGTCGCATTTTTCTTCGCCAGGT
61 GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGT-TGGTGCCGCATTTTTCTTCGCC-GGG
* * * * * * *
11986219 CACCATCGCTGGAGCATCGCCGGAGAACGTCACCGCGGCATTGGGGTTCCGGCAATCGGGGGGGC
124 CACCATCGCTGGAGCATCGTCGGAGAACCTGACGGCGGCATTGCGGTTTCGGCGATCGGGGGGGC
11986284 CGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
189 C-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
11986349 CCCTCATGAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGT
253 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA-AGCATTTGAGATTTTACAGGTTTGCTGC
* *
11986414 CAGTAGCCATTAATGTGTCTGAAATGGTGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACT
317 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
11986478 TCGAGTTTTTAGCTGAATTTTTTTGTGAATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTT
382 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
11986543 TGGGGCCGAAAATCATTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
447 TGGGGCC-AAAATCATTCCGAAAAAATTTTAAAAAATCTCGAACCGT-AAAAGTTTCAAAAATCA
* * *
11986608 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGTTTAAGGGACCATTGTAT
510 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
11986673 GATTTTACAAGCCATAAAAATGGCATTGGCATACAAAAATATGAAAATGTACCTAAACCCACCTA
575 GAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTA
*
11986738 CCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCGCCGCGC
640 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCGCCGCGC
* *
11986803 TCGCTTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGAT
705 TCGC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * *
11986868 TGAGGGTTACAGCAGCAGGATCGGCAGCA-GCAGAGGGGGACCTGGCCAATCCCCAAG-TTACGC
769 TGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCTGACCGATCCCC-GGCTTGCGC
* *
11986931 ATCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
833 ATCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
11986996 TTCATTCCCAGTCTAA
898 TTCATTCCCAGTCTAA
*
11987012 GCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAA-A-TGGA-C-GA-
* * * * *
11987077 CGAGAGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGGGCCGCATTTTTCTTCACCGGGG
60 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCC-GGG
* * *
11987142 CACCATTGCCGGAGCATCGTCGGAGAACCTGACGGCGGCATTGCGGTTTCGACGATCGGGGGGGC
124 CACCATCGCTGGAGCATCGTCGGAGAACCTGACGGCGGCATTGCGGTTTCGGCGATCGGGGGGGC
* *
11987207 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATA
189 CGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
11987272 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCC
254 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAA-AGCATTTGAGATTTTACAGGTTTGCTGCC
11987337 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
318 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
**
11987402 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGGAAAATACAAGGATCACGTCTACCAAGTTT
383 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
**
11987467 GGGGCCAAAA-CACCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCTAAAAGTTTTGAAAATCA
448 GGGGCCAAAATCA--TTCCGAAAAAATTTTAAAAAATCTCGAACCG-TAAAAGTTTCAAAAATCA
* * * *
11987531 TGAAAAATAGAAAACGAGTCGTCTTGCCCTGAAACTTCACGTCAAGGCTTAAGGGACCGTCGTAT
510 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
11987596 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
575 GAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
11987661 CCACCCTATCGATCGACGGCTTGCGCATCCCGTCTCTCTGG-TCGGCATAGTCCCCGCCCGTC-C
640 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GACGTAGTGCCCG-CCGCCGC
* ** * *
11987724 GTTCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGG
703 GCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
** *** * * * *
11987789 CCAAGGGTGGTGGTAGCAGGATCGGTAGCACGTAGAGGGGCA-CTCGACCGATCCCCGGCATGCG
768 CTGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCT-GACCGATCCCCGGCTTGCG
* *
11987853 CATCCCACCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGT
832 CAT-CCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
11987918 AGTTCATTCGCAGTCTAA
896 AGTTCATTCCCAGTCTAA
* *
11987936 GCATACGGAGTTCATTCCCAGTCT---C--A--A----A-T--CAGAC-CAA---AC--CGAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAATGGACGACGAGGG
* * * *
11987981 TTATGGCAGCACATGCTAGGCTCGGGCACGTGTTGGTGCCGCATTTTTCTTCGTCGGGCACCATC
66 TTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGCACCATC
* * * * **
11988046 GCTTGAGCATCGTCAGAGAACCTGACGGCGGCATTGCGGTTTCGGTGATCAGAAGGGCCGGGGGG
131 GCTGGAGCATCGTCGGAGAACCTGACGGCGGCATTGCGGTTTCGGCGATCGGGGGGGCCGGGGGG
*
11988111 TGTGCCCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATC
196 TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
** *
11988175 ATGCCTTGAGAACTCACACCCCCTTAGAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
261 AAACCTCGAGAACTCACACCCCCTTA-AAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
11988240 ATTAAAGTGT-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
325 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
11988304 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTAGCAAGTTTGGTGCCA
390 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-
* * * ** *
11988369 AAAATCCTTTCGAAAAAAATTTTAAAAAAATCCCGAACCGTAAAAGTTTCAAAAATTGTTAAAAA
454 AAAATCATTCCG-AAAAAATTTT-AAAAAATCTCGAACCGTAAAAGTTTCAAAAATCATGAAAAA
* *
11988434 TAGAAAACGAGTCATCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
517 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
11988499 CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
582 CAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
** * * *
11988564 ATCGATCCGTGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCACCCGTCCGGC-C
647 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCC-GCC-GCCG--C-GCTC
* ** * * ** *
11988628 GCTCGTTTCGTCGGCTGGCTTAGGCATACAAAGTTCATTGCTAGTCTAAGATTGGACCGGACTGA
707 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
* * * * * *
11988693 GGGTTACGGCAGCAAGATTGGCAGCATGTAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATTC
772 GGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCTGACCGATCCCCGGCTTGCGCA-TC
** * *
11988758 CTTCCCTCTGGCCGGCTGAGCACCCGCACGCACGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
836 CACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
11988823 ATTCCCAGTCTAA
901 ATTCCCAGTCTAA
11988836 G
1 G
11988837 ATCAGACCGG
Statistics
Matches: 1619, Mismatches: 179, Indels: 76
0.86 0.10 0.04
Matches are distributed among these distances:
895 117 0.07
896 281 0.17
897 132 0.08
898 52 0.03
900 173 0.11
901 3 0.00
902 1 0.00
903 1 0.00
907 1 0.00
908 1 0.00
909 4 0.00
911 1 0.00
912 1 0.00
916 1 0.00
919 1 0.00
921 3 0.00
922 266 0.16
923 475 0.29
924 105 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (913 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAATGGACGACGAGGG
TTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGCACCATC
GCTGGAGCATCGTCGGAGAACCTGACGGCGGCATTGCGGTTTCGGCGATCGGGGGGGCCGGGGGG
TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AATCATTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAGTTTCAAAAATCATGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCGCCGCGCTCGCTCGTTTC
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGG
CAGCAGGATCGGCAGCACGTAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCACCCCTCTG
GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAA
Found at i:11987947 original size:26 final size:26
Alignment explanation
Indices: 11987910--11987959 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11987900 GTTGACTTAG
* *
11987910 GCATACGTAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11987936 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
11987960 CAAATCAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11989712 original size:26 final size:26
Alignment explanation
Indices: 11989676--11989728 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11989666 GGTGACTTAG
11989676 GCATACAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
* *
11989702 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
11989728 G
1 G
11989729 ACCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:11990600 original size:26 final size:26
Alignment explanation
Indices: 11990564--11990616 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11990554 GTTGACTTAG
*
11990564 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
11990590 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11990616 G
1 G
11990617 ATCGGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11990680 original size:14 final size:14
Alignment explanation
Indices: 11990661--11990687 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
11990651 CGGGCTCGAG
11990661 CATCGTCGGAGCAC
1 CATCGTCGGAGCAC
11990675 CATCGTCGGAGCA
1 CATCGTCGGAGCA
11990688 TCGTCGGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (14 bp):
CATCGTCGGAGCAC
Found at i:11991463 original size:26 final size:26
Alignment explanation
Indices: 11991433--11991485 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11991423 GTTAACTTAC
*
11991433 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
11991459 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11991485 G
1 G
11991486 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11991966 original size:893 final size:895
Alignment explanation
Indices: 11988810--11992213 Score: 4364
Period size: 881 Copynumber: 3.8 Consensus size: 895
11988800 GTTGACTTAG
* *
11988810 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGGCCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * **
11988875 CTCGGGCTTGTGTTGGTGCCGCATTTTT-TTCATTGGGGCACCATCG-CGGAGCATCGCCAAAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
11988938 ACCTGACCGGCGACATT-GGGATTCCAATGATCGGATGGGCCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTAGGG-TT-CGACGATCGG--GGGCCGAGGGGG-GTGCGCACATGATGT
* * * **
11989002 GCGATAGGTGCTGGTAGTTGGACCTTATATTTTCCCCCTATCCCTCATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
11989067 CACCCCCTTAAAAAGCTTTTAAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * * *
11989132 T-GGGACACTTTTTTGAAAAGGTCAAAAAATCTTATACACTTCGAGTTTTTGGCTTAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
11989196 ATGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAA
* *
11989261 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
11989326 TGCCATGAAACTTCACGTGAAGGATTAAGGCACCATTGTATGAGTTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
11989391 ATTGGCAGGCAAAAATAT-AGAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 ATTGGCATGCAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** *
11989455 CGCATCACGTATCTCTGGCCAGTATAGTG--C-CCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTA
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * **
11989517 GGCATACAAAGTTCATTCTCTGTCTAAGATTGGA-TCGGACCGAGGGTTGCGGCAGCACCATCGA
710 GGCATACAGAGTTCATTCCCTGTCTAAGATCAGACT-GGACCGAGGGTTGCAGCAGCAGAATCGA
*
11989581 TAGCACACAGAGGGGGAC-CTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCA-ACCGA
774 TAGCACACAGAGGGGGACTC-GGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGG-CAGACCGA
* *
11989644 GCACCCGCACACTCGTTTCGTGGG-TGACTTAGGCATACAGAGTCCATTCCCAGTCTAA
837 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * *
11989702 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGTTTGTGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
11989767 CTTGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATTGTCGGAGCGTCATCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
11989832 ACCTGACCGACGGCA--A----T---CG---GGGGGCCTGGAGGGGTGTGCACACATGATGTGCG
131 ACCTGACCGGCGGCATTAGGGTTCGACGATCGGGGGCC--GAGGGGGGTGCGCACATGATGTGCG
**
11989885 ATGCATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
11989950 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
11990015 GGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCT-AAATTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
11990079 CATGCCAACAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTTCGAAAAAA
389 CATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
* * * * * * *
11990144 TTTAAAAAAATCTCGAACTGCAAGAATTTTCAAAAATCATGAAAAATAGAAAATGTGTCGTCTTG
453 TTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
11990209 CCATGAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
11990274 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
11990339 ATCCCATCTCTCTGGCCTGTGTAGTGCCCGCCG-CCGCTCGTTCGCTCGTTTCGTCGGTTGGTTT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGC-C---CGCTCGTTTCGTCGGTTGGCTT
* * ** * * * *
11990403 AGGTATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTAGTAGCAGGATCGA
709 AGGCATACAGAGTTCATTCCCTGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGAATCGA
* ** ** * * *
11990468 CAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCATGCCCCTCTGGCCGGCTGAGC
774 TAGCACACAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCAGACCGAGC
*
11990533 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * *
11990590 GCATACAGAGTTCATTCGCAGTCTAAGATCGGGCCA-GATCGAGGGTTACGGTAGCACATGCCGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATC-AGACAGGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** *
11990654 GCTC--G-A------------GCA----TCGT---CGGAGCACCATCGTCGGAGCATCGTCGGTG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * * * *
11990697 AACCTAACTGGCGGCATTAGGGTTCGGCGATCGGGGGGCG-GGGGTGTACGCACATGATGTGTGA
130 AACCTGACCGGCGGCATTAGGGTTCGACGATCGGGGGCCGAGGGGGGTGCGCACATGATGTGCGA
** * *
11990761 TGGGTGCTATTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAAGTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
11990826 CCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACAATTAAAGTGTCTGAAATGAG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * *
11990891 GAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAAGTTGACTTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
11990956 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT--GGCCAAAACTCCTTTCGAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATT
* *
11991019 TTAAAAAAT-CCGAACAGCAAAAAGTTTCAAAAGTCATGAAAAATAAAAAACGAGTCGTCTTGCC
455 TTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
11991083 ATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAACTTACAAGCCAAAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
11991148 GCATGCAGAAATATGAAGATGTACC-AAATCCCACCTACCACCCTATTGATCCACGGCTTGCGCA
585 GCATGCAGAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
11991212 TCCCGTCTTTCTGGTCGGCGTAGTGCCCGCCGCCCGCCTGCTCGTTTCGTTGGTTGGCTTAGGAA
649 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
11991277 TACGGAGTTTATT-TCTAGTCTGAGATC-GAACTGGACCGAGGGTTGCAGCAGCAGAATCGATAG
714 TACAGAGTTCATTCCCT-GTCTAAGATCAG-ACTGGACCGAGGGTTGCAGCAGCAGAATCGATAG
* *
11991340 CACACAGAGGGTGACTCGGTCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCAGACCGAGCACC
777 CACACAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCAGACCGAGCACC
* * * *
11991405 CGCACGCTCGTTTCATGGGTTAACTTACGCATACAGAGTTCATTCCTAGTCTAA
842 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * * *
11991459 GCATACGGAGTTTATTCCCAGTCTAAGATCGGATAGGACGGAGGGTTGTGGCAGTACAGGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
11991524 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
*
11991589 ACCTGACCAGCGGCATTAGGGTTTCGACGATCGGGGGCCGAGGGGGGTGCGCACATGATGTGCGA
131 ACCTGACCGGCGGCATTAGGG-TTCGACGATCGGGGGCCGAGGGGGGTGCGCACATGATGTGCGA
* *
11991654 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGACAACTCACA-C
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
11991718 CCCTTAAAGAGCATTTGAGATTTCACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
11991783 GACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
11991847 ATGCCAAC-AAAATAGAAGGATCACGTCTACCAAGTTTTGGGGCTAAAACTCC-TTCTAAAAAAA
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTTC-AAAAAAA
* * * *
11991910 TTTT-TAAAATCCCAAATC-GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTG
453 TTTTAAAAAATCCCGAA-CAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
11991973 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
11992038 TTGGCCATGCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
582 TTGG-CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
11992102 GCAT-CCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCTCGTTTTGTCGGTT-GCT
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCG--CTCGTTTCGTCGGTTGGCT
* *
11992165 TAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGATTGGACCGAGGGT
708 TAGGCATACAGAGTTCATTCCCTGTCTAAGATCAGACTGGACCGAGGGT
11992214 CGCGGTAACA
Statistics
Matches: 2165, Mismatches: 272, Indels: 148
0.84 0.11 0.06
Matches are distributed among these distances:
866 38 0.02
868 6 0.00
869 229 0.11
871 4 0.00
872 192 0.09
873 40 0.02
875 218 0.10
876 19 0.01
878 6 0.00
879 5 0.00
880 153 0.07
881 301 0.14
882 1 0.00
883 5 0.00
884 8 0.00
885 1 0.00
886 2 0.00
887 143 0.07
888 89 0.04
889 2 0.00
890 25 0.01
891 107 0.05
892 195 0.09
893 283 0.13
894 77 0.04
895 16 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTAGGGTTCGACGATCGGGGGCCGAGGGGGGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTT
TAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CAGAGTTCATTCCCTGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGAATCGATAGCACA
CAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCAGACCGAGCACCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:11997359 original size:716 final size:704
Alignment explanation
Indices: 11995983--11997450 Score: 2056
Period size: 715 Copynumber: 2.1 Consensus size: 704
11995973 CCAGTCTAAA
* * *
11995983 GCATACGGGAG-TCATTCTAAGTCTAAGTCAGACAGGGACCGAGGGTTTCGGTAGCACATGCTGG
1 GCATAC-GGAGTTCATTCCAAGTCTAAGTCAGAC-CGGACCGAGGGTTACGGTAGCACATGCTGG
* * *
11996047 CTTGGGGCATGTGCTGGTGCCATTTGTCTTCACCGAGGCACCATCGTCGGAGCATCGCCGGAGAA
64 CTTCGGGCATGTGCTGGTCCCATTTGTCTTCACCGAGGCACCATCGTCGGAGCATCACCGGAGAA
* * * * *
11996112 CCTGACCGGCGGCATTGGGGTTCCGGCGTCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGTGA
129 CCTGACCGACGGCATTGGGGTTCCAGCGTCGGAGGGGTCGGGGGGTGTGCACACATGATGTGCGA
* *
11996177 GGGTGCGGTACTAGCCCTTATATTGCCCCCTATCCGCTCATCAAATCTCTAGAAACTCACACCCC
194 GGGTGCGGTACTAGCCCTTATATTGCCCCCTATCCGCTCATCAAACCTCGAGAAACTCACACCCC
* *
11996242 TTAAAGACCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGACA
259 TTAAAGACCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGACA
* *
11996307 CTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAAATTTTTTTGTGCATGC
324 CTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTGTTTTGTGCATGC
* ***
11996372 AAAAAAATACAGGATCAACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTAAAAA
389 AAAAAAATACAGGATCAACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTAAAAA
* * *
11996437 ATCCCGAACCGCTAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGCCGTCTTGCCATTAAAC
454 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGCCATCTTGCCATGAAAC
* * *
11996502 TTCAAGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
519 TTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGAATGCA
**
11996567 GAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
584 GAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCGTC
* * *
11996632 TCTCTGGCCGGCATAGTGCCCACCCATCCTCCCGCCCGCTCGTTTCGTC-GATTGATTTAG
649 TCTCTGGCCGGCATAGTGCCC-CCC-T--GCCCGCCCGCTCGTTTCCTCAGATTG-CTTAG
* * *
11996692 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTACGGTAGCATATGCTGGG
1 GCATACGGAGTTCATTCCAAGTCTAAG-TCAGACCGGACCGAGGGTTACGGTAGCACATGCT-GG
* **
11996757 C-TCGGGCATGTGCTGGTACCACATTTTTCTTCACCG-GTGCACCATCGTCGGAGCATCATTGGA
64 CTTCGGGCATGTGCTGGT-CC-CATTTGTCTTCACCGAG-GCACCATCGTCGGAGCATCACCGGA
* * *
11996820 GAACCTGACCGACGGCATTGGGGTTTCAGTGATC-GATGGGTCGGGGGGTTGTGCACACATGATG
126 GAACCTGACCGACGGCATTGGGGTTCCAGCG-TCGGAGGGGTCGGGGGG-TGTGCACACATGATG
* *
11996884 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC-CTCATGAAACCTCGAG-AAC
189 TGCGA-GGGTGC-GGTAC-TAGCCCTTATATT-GCCCCCTATCCGCTCATCAAACCTCGAGAAAC
* * *
11996947 TCACACACCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTG
250 TCACAC-CCCTTAAAGACCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
*
11997012 AAATGGGACACTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAAA-TGTT
314 AAATGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTGTT
11997076 TTGTGCATGCCAAAAGAAATACAAGGATC-ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAA
379 TTGTGCATG-CAAAA-AAATAC-AGGATCAACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAA
* ** ** * *
11997140 AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCA
441 AAAAA-TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGCCA
*
11997205 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAAT
505 TCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAAT
*
11997270 GGCATTGGAATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAAC
570 GGCATTGGAATGCAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAAC
* * * * *
11997334 TTGCGCATCCTGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCCTCAGTTTG
635 TTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCCCCTGCCCGCCCGCTCGTTTCCTCAGATTG
11997399 CTTAG
700 CTTAG
* * * * *
11997404 GTATACAGAGTTCATTCCTAGTCTAAGGTTAGACCGGACTGAGGGTT
1 GCATACGGAGTTCATTCCAAGTCTAA-GTCAGACCGGACCGAGGGTT
11997451 GCGATAGTAG
Statistics
Matches: 673, Mismatches: 67, Indels: 35
0.87 0.09 0.05
Matches are distributed among these distances:
708 4 0.01
709 60 0.09
710 10 0.01
711 75 0.11
712 81 0.12
713 11 0.02
714 27 0.04
715 143 0.21
716 131 0.19
717 131 0.19
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (704 bp):
GCATACGGAGTTCATTCCAAGTCTAAGTCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGCT
TCGGGCATGTGCTGGTCCCATTTGTCTTCACCGAGGCACCATCGTCGGAGCATCACCGGAGAACC
TGACCGACGGCATTGGGGTTCCAGCGTCGGAGGGGTCGGGGGGTGTGCACACATGATGTGCGAGG
GTGCGGTACTAGCCCTTATATTGCCCCCTATCCGCTCATCAAACCTCGAGAAACTCACACCCCTT
AAAGACCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGACACT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTGTTTTGTGCATGCAA
AAAAATACAGGATCAACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTAAAAAAT
CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGCCATCTTGCCATGAAACTT
CAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGAATGCAGA
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCGTCTC
TCTGGCCGGCATAGTGCCCCCCTGCCCGCCCGCTCGTTTCCTCAGATTGCTTAG
Found at i:11997594 original size:26 final size:26
Alignment explanation
Indices: 11997564--11997614 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11997554 TGACTTAGGC
*
11997564 ATACGGGGTTCATTCCCAATCTAAGT
1 ATACGGAGTTCATTCCCAATCTAAGT
*
11997590 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
11997615 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGT
Found at i:11999093 original size:904 final size:903
Alignment explanation
Indices: 11996692--12016013 Score: 23386
Period size: 904 Copynumber: 21.8 Consensus size: 903
11996682 ATTGATTTAG
* * * *
11996692 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTACGGTAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * ***
11996757 CTCGGGCATGTGCTGGTACCACATTTTTCTTCACCGGTGCACCATCGTCGGAGCATCATTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * ** * * *
11996822 ACCTGACCGACGGCATTGGGGTTTC-AGTGATC-GATGGGTCGGGGGGTTGTGCACACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
11996885 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
11996950 CACACCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
11997015 T-GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAAATGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
11997078 GTGCATGCCAA-AAGAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
390 GTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
11997142 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11997207 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * **
11997272 CATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAACTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
11997337 CGCATCCTGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCCCG--C-C-CGCTCGTTTCCTCAGTTT
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTG
* * * * * * * * *
11997398 GCTTAGGTATACAGAGTTCATTCCTAGTCTAAGGT-TAGACCGGACTGAGGGTTGCGATAGTAGG
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGTAGCAGG
** * * *
11997462 ATCGGTAGCACGCAGAGGGGACCCGACCGATCCTCGACTTGCGCATCCCACCCCTCTGGCCGGCT
778 ATCGGTAGCACGCAGAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
11997527 GAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGGGTTCATTCCCAATCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
11997588 GTATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC-AGGGGTTGCAGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA-GGGTTGCGGCAGCACATGCTGG
* * ** * ** *
11997652 GCTCGGGCATGTGCTGATGCCGCATTTCTCTTCACCGAGGCACCATCACCGGAGCATCGCCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
11997717 AACCTGATCGACGGCATTAGGGTTTTCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATT-GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * * *
11997781 TACTATGGGTGCTGGTACATGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
11997846 ACTCCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
11997911 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
11997975 TGTCCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
11998040 AAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
11998105 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
11998170 CATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
11998235 CGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTTGTTTCGTCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTG
* * * * *
11998300 GCTAAGCCATACGGAGTTCATTCCAAGTCTAAGATCGAACCAAACTGAGGGTTGCGGTAGCAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGA
** * * *
11998365 TCGCCAGCACGTAGAGAGGGACACGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTT
779 TCGGTAGCACGCAGAG-GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* ** *
11998430 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGGTTACGGAGTTCTTTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
11998491 GCATATGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTTGTGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
11998556 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
11998621 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
*
11998686 GCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
11998751 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAATGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
11998815 TAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
11998880 CTGCAAGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATT-CGAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAA
* * *
11998944 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
11999009 TTGCCGTGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
11999074 CATTGGCACACAAAAATATGAAGATATGCCTAAACCCACCTACCACCATATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
11999139 CGCATCCCGTCTCTCTAGCCGGCGTAGTGCCTGCCCGCCTGCCCTCTCGCTCGTTTCGTTGGTTC
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTG
* ** * * * *
11999204 CCTTAGGCATACGGAGTTCATTCGTAGTCTAAGATC-AGTCCAGACCGAGGGTTGTGGCAGCAAG
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGTAGCAGG
* * ** * * * *
11999268 ATCGGCAACACATAGAGGGAGACCC-GACAGATCTCAGGCTTGCGCATCCCAGCCCCTATGGCCG
778 ATCGGTAGCACGCAGAGGG-GACCCGGTC-GATCCCCGGCTTGCGCATCCC-GCCCCTCTGGCCG
* *
11999332 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
11999396 GCATACGAAGTTCATTCCCAGTCTATGATCAGACCAGACCGAGGGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * *
11999461 CTCAGGCATGTGCTGGTGTTGCATTTTTCTTCGTTCAGGACACCATCGCCGGAGCACCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCGCCGGAG
*
11999526 AACCTGACCGGCGGCATTGTGGTTCCGACGATCGGGGGGGCC--GGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
11999589 GCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
11999654 GACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTAGCTGCCAGTAGCTATTAAAGTGT-TCGAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAA
* * *
11999718 ATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTGGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
11999783 TATGCATGCCAATAAAAATACAAGGATCCCTTCTACCAATTTTAGGGCCAAAACTTCTTCCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AA
* * *
11999848 AAAATTTTAAAAAATCCCGCAA-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
453 AAAATTTTAAAAAATCCTG-AACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
11999912 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
11999977 GGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*** * *
12000042 TGCGCATCCCGTCTCTCTGTAAGGC-TAAGTGCCCGCCTGCCCG--C-C-CGCTCGTTTCGCCGG
647 TGCGCATCCCGTCTCTCTGGCCGGCGT-AGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGG
* * * *
12000102 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGTAGCA
711 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCA
* ** * * ** *
12000167 GGATCGATAGCACATAGAGGGGGACCCGGCCGAACCATGGCTTGCGCATCCCACCCCTCTGGCCG
776 GGATCGGTAGCACGCAGA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
12000232 GCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCACAGTCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12000296 G-AT-C---G---A-----A--C------C-GA----ACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12000335 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
12000400 ACCTTACCGGCGGCATTGGGGTTCTGATGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* ** * *
12000465 GCGATGGGAGCTGGTACTTGGCCCTTATATTCACCCCCAAACCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12000530 CACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12000595 TGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12000660 GTGCATGCCAA-AAAATTACAAGGATCACGTCT-CCATGTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * * *
12000723 AATTATAAAAAATCCCAAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
12000788 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
12000853 ATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACGTACCACCCCAGCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12000918 GCATCCCGTCTCTCTGGCCGACGTAGTGACCGTCCGCCCG-CCGCCCGCTCGTTTCGTCGGTT-G
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
* * * * * *
12000981 ATTCGGGCATACGAAGTTCACTCCCAGTCTAAGATC-AGACCAGACCGAAGGTTGCGGTAGTAGG
715 CTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGTAGCAGG
* * * ** * * *
12001045 ATTGGCAGCACGCAGATGGGGACTCGACCGATCCTCAGCTTGCCCATCCCGCCCCTCTGGCCGGC
778 ATCGGTAGCACGCAGA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
12001110 TGAGCGCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
12001172 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12001237 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCCTCGCCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
12001302 ACCTGACCGGCTGCATTGGGGTTCCGATGATCGGGGGGGCC-GGGAGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
12001366 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12001431 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12001496 GGGGTCACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * *
12001561 CACATGCCAACAAAAATACAAGGATCATGTCTACCGAGTTTGGGGCCAAAACTCCTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
* * * * * * *
12001626 AATTTAAAAAAAT-CTCGAGCCGCAAAAGGTTTCAAAAATCCTGAAAAATAGAAAATGAGTCATC
455 AATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
12001690 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12001755 CATTGGCATGAAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * *
12001820 CGCATCCCGTCTCTCTGTACGGC-TAAGTGCCCGCCTGCCCG--C-C-CGCTCGTTTCGCCGGTT
649 CGCATCCCGTCTCTCTGGCCGGCGT-AGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTT
* * * *
12001880 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGTAGCAGG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGG
* ** * * ** * *
12001945 ATCGATAGCACATAGAGGGGGACCCGGCCGAACCATGGCTTGCGCATCCCACCCCTCTGGCTGGC
778 ATCGGTAGCACGCAGA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
12002010 TGAGCGCCTGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCACAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12002072 G-AT-C---G---A-----A--C------C-GA----ACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
12002111 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCATTGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
12002176 ACCTTACTGGCGGCATTGGGGTTCTGATGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* ** * * *
12002241 GCGATGGGAGCTGGTACTTGGCCCTTATATTCACCCCCAAACCCTCATCAAACATCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12002306 CACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12002371 TGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
12002436 GTGCATGCCAACAAAAATACAAGGATCACATCAACCAGGTTTGGGGCCAAAACTCCTTTCGAGAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
12002501 AATTTTAAAAAATCCCGAACCGCAAAAACTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
12002566 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATACAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
12002631 ATTGGCACACAGAAATATGAAGATGTGCCTGAACCCACCTACAACCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12002696 GCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCGTCCGCCCGCCCTCTCGTTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
* **
12002760 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCTG-ACTGGACCGAGGGTTGCGGTAGCAGGA
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGCGGTAGCAGGA
* * *
12002824 TCGATAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTG-CCC-CT------CT
779 TCGGTAGCACGCAGA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
12002881 GA--------ACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12002934 GCATACGGAGTTGATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12002999 CTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCGCCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
12003064 ACCTAACCGACGGTATTAGGGTTCC-AGCGATC-GGGGGGCC-GGGGGGTGTGCACACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
12003126 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12003191 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAACCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12003256 TGGGGACACTTTTTTCAAAATGGTCACCAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
325 TGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
12003321 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCC-AAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * *
12003385 AAGATTTTAAAAGATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
454 AA-ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG-
*
12003450 TCTTCCCATGGAAACTTCACGTGAA-GCTT-AGGGACCCATTGTAATGAATTTACCAAGCCATAA
517 TCTTGCCAT-GAAACTTCACGTGAAGGCTTAAGGGA-CCATTGT-ATGAATTTA-CAAGCCATAA
** ** * *
12003513 AAAT-TTATTGGCACACAAAAATATTGATGATGCCTGCCTAAACCCACCTTACCACCCTATCGAT
578 AAATGGCATTGGCATGCAGAAATA-TGAAGATG--TGCCTAAACCCACC-TACCACCCTATCGAT
* * * * * *
12003577 CCATGTGGCTTTGCGCATTCCCATTCTCTCTGGGTCAGCGTAGTGACCGCCCGCCCGCCCGCCTG
639 CCA--CGGC-TTGCGCA-TCCC-GTCTCTCT-GGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CTC
* *
12003642 GCGCGTTTCGTCGG-TGGCTTTGGCATACCGGAGTTCATTCCCGAGGTCTAAGATTC-AGACCAG
697 GCTCGTTTCGTCGGTTGGCTTAGGCATA-CGGAGTTCATTCCC-A-GTCTAAGA-TCGA-ACCAG
* * * * * * ** *
12003705 A-TGAGGGTTACGGTAGTAGAATCTGGTAGCACGTAGAGGGGTACCTGACCAATCCCCGGCTTGC
757 ACCGAGGGTTGCGGTAGCAGGATC-GGTAGCACGCAGAGGGG-ACCCGGTCGATCCCCGGCTTGC
* * * * * **
12003769 GCATCCCACCCCTTTGGCCGGTTGAGCGCCCGCGCGCTCATTTCACGGGTTGACTTAGGCATACG
820 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
12003834 GAGTTCATTCTCAGTCTAA
885 GAGTTCATTCCCAGTCTAA
* * * * * *
12003853 GCATACGAAGTTCATTCCCACTCTAAGATCGGATCGGTCAGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * ** *
12003918 CTCAGGCATGTGCTGGTGCCTAATTTTTCTTCCTTGGGGCACCATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
12003983 ACCTGACCAGG-GG-A-T---G-T--G-C-A----------C---------T-----CATGATGT
131 ACCTGACC-GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
12004013 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12004078 CACCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12004143 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTTGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
12004208 GTGCATGACAA-AAAACATTCAAGGATCACATATACCAAGGTTGGGGCCAAAACTCCTTCTGAAA
390 GTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
12004272 AAATTTTAAAAAAATCTTGAAACACAAAAAGTTTCGAGAATCGTGAAAAATAGAAAACGAGTCGT
454 AAATTTT-AAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
* ** *
12004337 CTTGCCATGAAACTTTACGTGAAGGCTTAAGGGAATATTGTATGAATTTACAAGCCATAAAACTG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * **
12004402 GCATTGGCACGCAAAAATATGAAGATGAGCCTAAATTCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *** ** * * * * *
12004467 GTGCATCCTACCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGTCCGCCCACT-GATTTCATCGAT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCG-TTTCGTCGGT
* * * * * *
12004531 TGGCTTAGGCATACGAAGTTCATTCCTAGACTCAGATC-AGACCAGACCGAGGGTTGCAGCAGCA
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGTAGCA
* * * * * * *
12004595 AGATCGGTGGCATGCAGAGGGGGACTCGATCGATCCCCGGCTTGCACATCCCGCCCTTCTGGCCG
776 GGATCGGTAGCACGCAGA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
** * * *
12004660 GCTGAGAACCCGCACTCTCATTTTGTGGGTTGACTTAGGCATACGGAG----TT--CA---T--
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
12004713 ---T-C------C--T---AGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
12004763 CTCGGGCATGTGCTGGTGCCGCA---TT-TT--T--------C-T--TC---GC-T----GGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * **
12004803 ACCTGACCGGCAGTATTGGGGTTCTGGC-AACAAAGGGGGCCGAGGGGGGTGTGCGCACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCG-GGGGGGTGTGCGCACATGATG
* * * *
12004867 TCCGATGGTTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12004932 ACACCCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12004997 ATGGGGACA-TATTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTT
324 ATGGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
12005061 TAGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
12005126 AAAATTATAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCAT
453 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
12005191 CTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
12005256 GTATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATTGATTCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
12005321 GCGCATCCCGTCTCTTTGGTCGGCATAGTGCCTGCCCGCCCGCTCGGC-CACTCGTTTTGTCAGT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC-CCGCTCGCTCGTTTCGTCGGT
** *** * * * * * * *
12005385 TTTCTTAGGCATAC-GAGGTTCATT--CA-AAAAAGATTGCATCAAACTGAGGGTTGCAGCAGCA
712 TGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCA
* *
12005446 GGATCGGTAGCACACAGAGGGGAACCCGG-CTGATCCCCTGGCTTGCACATCCCGCCCCTCTGGC
776 GGATCGGTAGCACGCAGAGGGG-ACCCGGTC-GATCCCC-GGCTTGCGCATCCCGCCCCTCTGGC
* * * *
12005510 CGGTTGAGTGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAG-TCATTCCCAGTCTA
838 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
12005574 A
903 A
* * * * * * *
12005575 GCATGCGGAGTTCATTCCTAGTTTAAGATCAGATCC-GACCAAGGGTTACGACAGCACATGCCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** *
12005639 GCTCGGGCATGTGCTGGTGTCGTC-TTTTTCTTTGTCGGGGTAGTATCG-CTGGAGCATCACCGG
65 GCTCGGGCATGTGCTGGTGCCG-CATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGG
* * * *
12005702 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGAGGCCGGGGGGGTGTGCGCAAATGAA
128 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
*
12005767 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
12005832 CACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
12005897 AATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
12005962 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGTGCCAAAACTCCATCTGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
12006027 AAAATTTTAAAAAATCCCGAACCGCAAAAAGGCTT-GAAAATCGTAAAAAATAGAAAGCGAGTCG
453 AAAATTTTAAAAAATCCTGAACCGCAAAAA-GTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
* *
12006091 TCTTGCCATGAATCTTCACGTGAAGGCTTAAGGGACC-TGTATATGAATTTACAAGCCATAAAAA
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT-TGTATGAATTTACAAGCCATAAAAA
** * * *** * *
12006155 TGGCATTGGCACACAAAAATATGACGATGCAACTAAACCCACCAACCACCCTATCGATCCATGGC
581 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * * * * *
12006220 TTAAGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCACCCGCCCGTTCGTTTCGTCAG
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGG
* * * **
12006285 TTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCA
711 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCA
* * * * * * * *
12006350 GGATCAGCAGCACGTAGAACGGGACCCGATCAATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCG
776 GGATCGGTAGCACGCAG-AGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
12006415 GCTGAGCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
12006479 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGCACCAGACCAAAGGTTGTGGCAGCACACACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
12006543 GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCG-CAGGAGGATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGA
* * * *
12006607 GAACCTGACTGGCGACATTGGGGTTCCGACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * * * *
12006672 TGAGATGGGTACTGGTGCTTGGCCATTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12006737 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12006802 ATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
12006867 TGTGCGTACCAATAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
12006932 AATTTTTAAAATATCC-CAGACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
454 AAATTTTAAAAAATCCTGA-ACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
12006996 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
12007061 GCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAGCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
12007126 GCGCATCCCATCTCTCTGGTCGGCATAGTGCCCGCCCGCCCG---AC-CGCTCGTTTCGTCGATT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTT
* * * * * *
12007187 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-AGATCGGACTGAGGGTTGTGGTAGTAG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGTAGCAG
* *
12007251 GATCGGTAGCACGCAGAAGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
777 GATCGGTAGCACGCAG-AGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
12007316 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12007379 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12007444 CTCGGGCATGTGATGGTGCCGCATTTTTCTTCGCCTGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
12007509 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTACGCACATGATAT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* * * *
12007574 GTGATTGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAGACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
12007639 CACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12007704 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTTAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** * *
12007769 TTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCTCCAAAAATCCTTTCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
12007834 AATTTTAAAAAAT-CTCGAACCGTAAAAAATTTAGAAAATTGTGAAAAATAGAAAACGAGTCGTC
455 AATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
12007898 TTGCGATGTAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
12007963 CATTGGCATGCAGAAATATGAAGCTACGCCTAAACCCACCTACCGCCCTATCGATCCATGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
12008028 CGCATCTCGTCTCTCTGGCCAGCGTAGT----GCCCGCCTG--C-C-CGCTCGTTTCGTCAGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTG
* * * * * *
12008085 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGA-CTGAACCGAGGGTTGCAGCAGCAGG
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACCGAGGGTTGCGGTAGCAGG
* * ** *
12008149 ATCGGTAGCACGCAGAGGTGGACCCAGTCGAAT-CCCAGCTTGTACATCCCGCCCCTCTGGCCAG
778 ATCGGTAGCACGCAGAGG-GGACCCGGTCG-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
12008213 TTGACCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12008276 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG-GGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG-CAGCACATGCTGG
* ** * *
12008340 GCTCGAGCATGTGCTGGTGCCGTGTTTTTCTTCGCCGGGGTACCAT-GTCGGAG--T--------
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
12008394 -ACCTAACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATCATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
12008458 GCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* ** *
12008523 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAATCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12008588 TGGGGACATTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGCA-TTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
12008652 GTCCATGCCAA-AAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
390 GTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** *
12008716 AAATTTTAAAAAATCCTGAA-CGACAAAAAGTTTTAAAAATCGTGAAAAATAG-AAACGAGTCAT
454 AAATTTTAAAAAATCCTGAACCG-CAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
12008779 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * ** * *
12008844 GCATTGGCATGCAGAAATATGAAGATGGGTCTATGCCCACCTCCCACCCTATCGATCCAAGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12008909 GTGCATCCCGTCTCTCTGGCCGACGTAAT----GCCCGCCTGCCCGCT---T-GTTTCGTCGGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTT
* * * ** *
12008966 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC-AGACCGGATCGAGGGTTGCGACAGTAG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGTAGCAG
* * * *
12009030 GATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCAG
777 GATCGGTAGCACGCAGA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * ** * *
12009095 CTGAGCTCCCGTATGCTCGTTTAATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12009158 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
12009223 GTCGGGCATGTGCT-GTGCTACA-TTTT-TTCGTCGGGGGCACCA----C----CA---CCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
12009274 AACCTGACCGACGGCATTGGGGTTCCGATGA-CTGGTGGGTC--GGGGGTGTGCGCACAT-ATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
12009335 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12009400 CACCCCCTTAAAGAGCATTTGAGATTTTACCGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12009465 TGGGGACATTTTTTTTAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
12009530 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
12009595 AATTTTAAAAAAT-CTCGAACAGTAAAAATTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
455 AATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
12009659 TTGCCACGAAACTTCACGT--A-----AAGGGACCACTGTATGAATTTACAAGCCACAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * **
12009717 CATTGGCATGTAGAAATATAAAGATGTACCTAAA-CCACCTACCACCCTATTGATCCATAGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * *
12009781 CGCATCCCATCTCTCTGGCCGGCGCAGTGCCTACCAGCACGCCCGCTC-AT--TTT-GTCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTG
* * * * * * *
12009842 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGA
* * * * ** * * *
12009907 TCGATAGCATG-AAAGGGGGCCCCGACCGATCCCTGACTTGCGCATCTCGCCCCTCTGGCCGGCT
779 TCGGTAGCACGCAGA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
12009971 GAGCACCCGCACGCTCGTTTTGTGGGTTGAGTTAGGCATATGGAGTTCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
12010032 G-AT-C-G-G---------A-TC---G----GA-C--A--GAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
12010071 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCAGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
12010136 ACCTGACAGGCGGCATTGGGGTTCCGGCGATC-AGGGGGCC-----GG-G-G-G-----G-TGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
12010186 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12010251 AACCCCTTAAAAAGGATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12010316 GGGG-CACTTTTTTTCAAATGATCACAAAATCTTTTACA-TATCGAGTTTTTAGCTGAATTTTTT
326 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTT
* * * *
12010379 TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCAAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
12010444 AAATTTTAAAAAATCTTGAACCG-TAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * * *
12010508 TTGCCATAAAACTTCACGTGAAGGCTTAAGGAACCATTGTATAAATTTAAAAGCCATAAAAAAGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * * *
12010573 CATTGGCATGCAGAAATATGAAAATGTGTCTAAGCTCACCTCCCACACTATTGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
12010638 CGTATCCCGTCTCTCTGGCTGGCGTACTGCCCGCCTGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTG
* * * * * ** *
12010703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TAGATCGGATCAAGGGTTGCGACAGCAAG
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGTAGCAGG
* * * * * *
12010767 ATCGGCAGCATGCAGAGGGGGACCCAGTCCATCCCCGGCTTGCGCATCCCGCCCTTCTCGCCGGC
778 ATCGGTAGCACGCAGA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * ** * *
12010832 TGAGCTCCCACACACTCGTTTAATGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
12010894 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12010959 CTCGGCCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGC-CCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
12011023 ACCTGACCGGCGGCATTGGGGTTTCAACGATCGGGGGGGTCGGGCGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGT
* * * * *
12011088 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAGCCTTGAAAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12011153 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12011218 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12011283 GTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * * * *
12011347 AATTTTCAAAAGTCCTGAATCGTAAAAACTTTTGAAAA-CGTGAAAAATAGATAATGAGTCGTCT
455 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
12011411 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
12011476 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
12011541 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTTGA
650 GCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGG
* ** * * *
12011606 TTGGCTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCTTACCGGACCGAGGGTTGCAGAAGCA
711 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCA
* ** * * * *
12011671 AGATCGACAGCACGCAGAGGAGGACCCGATCGATCCCCGGCTTCCGCATCCCGCCCCTCTAGCCA
776 GGATCGGTAGCACGCAGAGG-GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
12011736 GCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12011800 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12011865 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
12011930 ACCTGACTGGCGGGATTGGGGTTCCGACGATC-GGGGGG-C-GGGGGGTGCGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
12011992 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12012057 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTGAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12012122 GGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTT
* * * *
12012187 GTGCATGCCAACAAAAGTACAAGGATCACGTCTACGAAGTTTGGGGCTAAAACTCCTTTCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
12012252 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
12012317 TGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
12012382 ATTGGCACACAGAAATATGAAAATGTGCCTAAACCCACCAACCACCCGATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12012447 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCACCCGCTCATTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
* * *
12012512 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGAT
* * * * * * *
12012577 CTGTAGCACAG-AGAGGGGGACCCGATCGATCCCCGGTTTGCGTATCTCGTCCCTCTGTCCGGCT
780 CGGTAGCAC-GCAGA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
12012641 AAGCGCCCGTACGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTATAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12012702 GCATACGGAGTCCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12012767 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGTATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
12012832 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTGGTGTTCGTACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGT
* * *
12012897 GCGATGGCTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12012962 CACCCCCTTAAGGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
12013027 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
12013092 GTGCATGACAACAAAAATAAAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCCTTCTGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
12013157 AATTTTAAAAAATCC-GAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
455 AATTTTAAAAAATCCTG-AACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12013221 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
12013286 CATTGGCATGCATAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACAGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * * * *
12013351 TGCATTCC--CTCTCTAGCCGACGTAGTGCCCGTCCGTCCACCCGCCCGTTCGTTTTGTCGATTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTG
** * * * * *
12013414 GCTTAGGCATACTTAGTTCGTTCCCAGCCTAAGATTGTACCAGACCGAGGGTTACGGTAGC---A
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGA
* * *
12013476 ----T-GCA--AAG-GGGGACCCAGTCGATCCCTGGCTTG-GACATCCCGCCCCTCTGGCCGGCT
779 TCGGTAGCACGCAGAGGGGACCCGGTCGATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCCGGCT
* * * *
12013532 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCAGATGGAGTTCATTCCCAATCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12013593 -CAT-C---G---A-----A--C-----T------GGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12013632 CTCGGGCATTTGCTGGTGCCGCATTTTTCTTCATTGGGGCACCATC-TCCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-CGGAGCATCGCCGGAG
* * * *
12013696 AACTTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGCGTGTGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
12013761 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATTAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
12013826 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12013891 TGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTC-AGTTCTTAGCTGAATTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTT
12013955 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
12014020 AAACTTTAAAAAAT-CTCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGT
454 AAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
12014084 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATTAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
12014149 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12014214 TCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCTGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTT
* * *** *
12014279 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGTAGCAGA
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGG
* * * *
12014344 ATCGGCAGCACGCAGAGTGGG-CCTCGGTCGATCCCCGACTTGTGCATCCCGCCCCTTTGGCCGG
778 ATCGGTAGCACGCAGAG-GGGACC-CGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
12014408 CTGAGCTCCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12014467 -C-TA---AG---------A-TC------C-GACCAGACCGAGGGTTGTGGCAGCACATCCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12014510 CTCGGGTATGTGCTGGTGTCGCA-TTTTCTTCGTC--GG-AGCATCGT-------T----GGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
12014560 ACCTGACCGACAGGCATTGGGGTTCCGGCGATCGGGGGGGCC-AGGGGGTGTTCGCACATGATGT
131 ACCTGACCGGC-GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
12014624 GCGGTGGGCTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCTTTCAAACCTCGAGAACT
195 GCGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACT
12014689 CACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
12014753 AATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
12014818 TTGTGAATGCCAACCAAAAATACAAGGATCACATCTA-CAAGTTTGGGGCCGAAACTCCTTCCGA
388 TTGTGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
** ** ** *
12014882 AAAAGCTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
452 AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
12014947 TCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTATATGAATTTAGAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * * *
12015012 GGCATTGGTACGCAGAAATATAAACATGTGCATAAACCCAGCTACCACCCTATCGATACACGGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
12015077 TACGCATCCCGTCTCTCTGGCCAGCGTAGAGCCCGGCCG-CCG-AC-CT-GCTCGTTTCATCAGT
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGT
* * *
12015138 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTACGATC-AGACCGGACCGAGGGTTGCGGTAGCA
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGTAGCA
* * * * * *
12015202 GGATCGGTAGCACGTAGAGGGG-CACCTGACTGATCCCCGGCTTGCTCATCCCGCCCCTTTGTCC
776 GGATCGGTAGCACGCAGAGGGGAC-CCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
12015266 TGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12015331 G-AT-C-G-G---------A--C-----T------GGACCGAGGGTTTCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12015370 CTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCA---T-------T-GCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * **
12015424 ACCTGACCGGCGTCATTGGGGTTCCGATGATCAAGGGGG-C-GGGGGGTGTGCGCACATGATGT-
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
12015486 -GA---------G-A--T-G----------GG-----T-GCCCTCATCAAACCTCCAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
12015521 ACCCGCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAGT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12015586 GTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGGTTTTTAGCTGAATTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTT
* * * *
12015650 GTGCATACCAACCAAAATACAACGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
12015715 AACATTTAAAAAATCCTGAATCGCAAAAATTTTTGAAAATCATGAAAAATAGAAAACTAGTCGTC
455 AA-TTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
12015780 TTGCCTTGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12015845 CATTGGCATGCAGAAATATGAAGATGTGCCTACACCCACCTACCACCCTATCGATCCGCGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
12015910 CGCATCCTGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGTCCGCTCGTTTCATCG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--C-T-CGCTCGTTTCGTCG
*
12015975 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
710 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
12016014 TGGATCGGCA
Statistics
Matches: 16063, Mismatches: 1872, Indels: 1039
0.85 0.10 0.05
Matches are distributed among these distances:
819 2 0.00
820 14 0.00
821 1 0.00
822 1 0.00
824 1 0.00
825 3 0.00
826 1 0.00
828 2 0.00
829 56 0.00
830 148 0.01
831 199 0.01
832 3 0.00
833 1 0.00
836 3 0.00
837 1 0.00
839 49 0.00
840 1 0.00
841 2 0.00
842 2 0.00
845 60 0.00
846 1 0.00
847 1 0.00
848 36 0.00
849 63 0.00
850 280 0.02
851 58 0.00
852 68 0.00
853 3 0.00
854 231 0.01
855 255 0.02
856 66 0.00
857 67 0.00
858 5 0.00
859 7 0.00
860 225 0.01
861 126 0.01
862 168 0.01
863 73 0.00
864 872 0.05
865 197 0.01
866 97 0.01
867 4 0.00
869 1 0.00
870 6 0.00
871 145 0.01
872 91 0.01
873 282 0.02
874 334 0.02
875 352 0.02
876 657 0.04
877 266 0.02
878 381 0.02
879 47 0.00
880 21 0.00
881 55 0.00
882 420 0.03
883 110 0.01
884 218 0.01
885 245 0.02
886 277 0.02
887 286 0.02
888 207 0.01
889 22 0.00
890 4 0.00
891 107 0.01
892 21 0.00
893 3 0.00
894 6 0.00
895 14 0.00
896 143 0.01
897 445 0.03
898 309 0.02
899 79 0.00
900 822 0.05
901 1062 0.07
902 865 0.05
903 1298 0.08
904 1355 0.08
905 689 0.04
906 734 0.05
907 53 0.00
909 1 0.00
910 1 0.00
911 3 0.00
913 1 0.00
914 1 0.00
917 1 0.00
918 1 0.00
919 168 0.01
920 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGATC
GGTAGCACGCAGAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:11999407 original size:26 final size:26
Alignment explanation
Indices: 11999370--11999420 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11999360 GTTGACTTAG
11999370 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11999396 GCATAC-GAAGTTCATTCCCAGTCTA
1 GCATACAG-AGTTCATTCCCAGTCTA
11999421 TGATCAGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12001182 original size:26 final size:26
Alignment explanation
Indices: 12001146--12001198 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12001136 GTTGACTTAG
12001146 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12001172 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12001198 G
1 G
12001199 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12002944 original size:26 final size:26
Alignment explanation
Indices: 12002908--12002960 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12002898 GTTGACTTAG
12002908 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12002934 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12002960 G
1 G
12002961 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12003856 original size:26 final size:26
Alignment explanation
Indices: 12003827--12003879 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12003817 GTTGACTTAG
* * *
12003827 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
12003853 GCATACGAAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
12003879 G
1 G
12003880 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:12005584 original size:25 final size:26
Alignment explanation
Indices: 12005550--12005601 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12005540 GTTGACTTAG
12005550 GCATACGGAG-TCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
12005575 GCATGCGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12005601 G
1 G
12005602 ATCAGATCCG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12006482 original size:26 final size:26
Alignment explanation
Indices: 12006453--12006505 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12006443 GTTGACTTAG
12006453 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12006479 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12006505 G
1 G
12006506 ATTGCACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12007389 original size:26 final size:26
Alignment explanation
Indices: 12007353--12007405 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12007343 GTTGACTTAG
*
12007353 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12007379 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12007405 G
1 G
12007406 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12008014 original size:901 final size:898
Alignment explanation
Indices: 12004793--12016013 Score: 13694
Period size: 901 Copynumber: 12.7 Consensus size: 898
12004783 GCATTTTTCT
* * * * * * **
12004793 TCGCTGGAGAACCTGACCGGCAGTATTGGGGTTCTGGC-AACAAAGGGGGCCGAGGGGGGTGTGC
1 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCG-GGGGGGTGTGC
* * *
12004857 GCACATGATGTCCGATGGTTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
64 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
12004922 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAA
129 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
12004987 AGTGTCTGAAATGGGGACA-TATTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAG
194 AGTGTCTGAAATGGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
12005051 CTGAATTTTTTAGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
258 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * *
12005116 TCCTTCCAAAAAAATTATAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAA
323 TCCTTCCGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAA
* *
12005181 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGC
387 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * *
12005246 CGTAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATTGA
452 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
12005311 TTCACGGCTTGCGCATCCCGTCTCTTTGGTCGGCATAGTGCCTGCCCGCCCGCTCGGCCACTCGT
517 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C--CCGCTCGT
* ** *** * * * ** *
12005376 TTTGTC-AGTTTTCTTAGGCATAC-GAGGTTCATT--CA-AAAAAGATTGCATCAAACTGAGGGT
578 TTCGTCGA-TTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * *
12005436 TGCAGCAGCAGGATCGGTAGCACACAG-AGGGGAACCCGG-CTGATCCCCTGGCTTGCACATCCC
641 TGCGGCAGCAGGATCGGTAGCACGCAGAAGGGG-ACCCGGTC-GATCCCC-GGCTTGCGCATCCC
* * * *
12005499 GCCCCTCTGGCCGGTTGAGTGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAG-TCA
703 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * **
12005563 TTCCCAGTCTAAGCATGCGGAGTTCATTCCTAGTTTAAGATCAGATCC-GACCAAGGGTTACGAC
768 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GA-CCGGACCGAGGGTTGTGAC
* * * * **
12005627 AGCACATGCCGGGCTCGGGCATGTGCTGGTGTCGTC-TTTTTCTTTGTCGGGGTAGTATCG-CTG
831 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG-CATTTTTCTTCGTCGGGGCACCATCGTC-G
12005690 GAGCA
894 GAGCA
* * *
12005695 TCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGAGGCCGGGGGGGTGTGCGC
1 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
* * *
12005760 AAATGAAGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
12005825 GAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCTAGTAGCCATTAAAG
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
12005890 TGTTTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
196 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
12005955 AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGTGCCAAAACTCC
261 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * ** * *
12006020 ATCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGGCTTGAAAATCGTAAAAAATAGAAAGC
326 TTCCGAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
* *
12006085 GAGTCGTCTTGCCATGAATCTTCACGTGAAGGCTTAAGGGACC-TGTATATGAATTTACAAGCCA
390 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT-TGTATGAATTTACAAGCCA
** * * *** *
12006149 TAAAAATGGCATTGGCACACAAAAATATGACGATGCAACTAAACCCACCAACCACCCTATCGATC
454 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* ** * * *
12006214 CATGGCTTAAGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCACCCGCCCGTTCGTTT
519 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCCCGCTCGTTT
* * *
12006279 CGTC-AGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC
580 CGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* * * * * * * *
12006343 GACAGCAGGATCAGCAGCACGTAGAACGGGACCCGATCAATCCTCGGCTTGCGCATCCCGCCCCT
644 GGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT
* * *
12006408 CTAGCCGGCTGAGCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
709 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * * *
12006473 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGCACCAGACCAAAGGTTGTGGCAGCACAC
774 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGACCGAGGGTTGTGACAGCACAT
* * * ** *
12006538 ACTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCG-CAGGAGGA
838 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCA
* * * * *
12006599 TCGTCGGAGAACCTGACTGGCGACATTGGGGTTCCGACGATCGGAGGGGTCGGGGGGGTGTGCGC
1 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
* * * * *
12006664 ACATGATGTGAGATGGGTACTGGTGCTTGGCCATTATATTGGCCCCTTATCCCTCATCAAACCTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
12006729 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
12006794 TGTCTGCAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
196 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * *
12006859 AATTTTTTTGTGCGTACCAATAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAACTCC
261 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * **
12006924 TTCTGAAAAATTTTTAAAATATCCCAGACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
326 TTCCGAAAAAATTTTAAAAAATCCGA-ACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
*
12006989 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
390 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
12007054 AAAAATGGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAGCC
455 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
12007119 ACGGCTTGCGCATCCCATCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGACCGCTCGTTTCGTCG
520 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * * *
12007184 ATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGT
585 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
* *
12007249 AGGATCGGTAGCACGCAGAAGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
650 AGGATCGGTAGCACGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
12007314 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
715 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
12007379 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCACATGCTGGG
780 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* * *
12007444 CTCGGGCATGTGATGGTGCCGCATTTTTCTTCGCCTGGGCACCATCGTCGGAGCA
844 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* *
12007499 TCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTACG
1 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCG
* * * * *
12007564 CACATGATATGTGATTGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAGACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
12007629 CGAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
12007694 GTGTTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * ** *
12007759 TAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCTCCAAAAATC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * *
12007824 CTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAATTTAGAAAATTGTGAAAAATAGAAAA
325 CTTCCGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
* *
12007889 CGAGTCGTCTTGCGATGTAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* ** *
12007954 TAAAAATGGCATTGGCATGCAGAAATATGAAGCTACGCCTAAACCCACCTACCGCCCTATCGATC
454 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
12008019 CATGGCTTGCGCATCTCGTCTCTCTGGCCAGCGTAGT----GCCCGCCTGCCCGCTCGTTTCGTC
519 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * *
12008080 -AGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGAACCGAGGGTTGCAGCA
584 GA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* * **
12008144 GCAGGATCGGTAGCACGCAG-AGGTGGACCCAGTCGAAT-CCCAGCTTGTACATCCCGCCCCTCT
648 GCAGGATCGGTAGCACGCAGAAGG-GGACCCGGTCG-ATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
12008207 GGCCAGTTGACCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
711 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
12008272 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGGGACAGCACATGC
776 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGTGACAGCACATGC
* ** * *
12008337 TGGGCTCGAGCATGTGCTGGTGCCGTGTTTTTCTTCGCCGGGGTACCAT-GTCGGAG--
840 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* * *
12008393 T---------ACCTAACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGC
1 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
* *
12008449 ACATCATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* **
12008514 GAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAATCATTAAAG
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
12008579 TGTCTAAAATGGGGACATTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTG
196 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
12008644 CA-TTTTTTGTCCATGCCAA-AAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
261 AATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
*
12008707 CTTCCGAAAAAATTTTAAAAAATCCTGAA-CGACAAAAAGTTTTAAAAATCGTGAAAAATAG-AA
325 CTTCCGAAAAAATTTTAAAAAATCC-GAACCG-CAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* *
12008770 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCC
388 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * ** *
12008835 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGGGTCTATGCCCACCTCCCACCCTATCGAT
453 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
12008900 CCAAGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAAT----GCCCGCCTGCCCGCTTGTTTCGT
518 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * *
12008961 CGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACA
583 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* * * * *
12009026 GTAGGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCTTCTGG
648 GCAGGATCGGTAGCACGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * ** * *
12009091 CCAGCTGAGCTCCCGTATGCTCGTTTAATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCT
713 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
12009156 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTG
778 AAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGTGACAGCACATGCTG
* **
12009221 GGGTCGGGCATGTGCT-GTGCTACA-TTTT-TTCGTCGGGGGCACCA----C----CA
842 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCA
* * * * *
12009268 ---CCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGA-CTGGTGGGTC--GGGGGTGTGCGC
1 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
*
12009327 ACAT-ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
12009391 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACCGATTTGCTGCCAGTAGCCATTAAAG
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * *
12009456 TGTCTAAAATGGGGACATTTTTTTTAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTG
196 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
12009521 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
261 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *
12009586 TTCCGAAAAAATTTTAAAAAATCTCGAACAGTAAAAA-TTTTCAAAAATCATGAAAAATAGAAAA
326 TTCCGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTT-GAAAATCGTGAAAAATAGAAAA
* * *
12009650 CAAGTCGTCTTGCCACGAAACTTCACGT--A-----AAGGGACCACTGTATGAATTTACAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * *
12009708 CAAAAATGGCATTGGCATGTAGAAATATAAAGATGTACCTAAA-CCACCTACCACCCTATTGATC
454 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
** * * ** * * * *
12009772 CATAGCTTGCGCATCCCATCTCTCTGGCCGGCGCAGTGCCTACCAGCACGCCCGCTCATTTTGTC
519 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * *
12009837 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAG
584 GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
* * * ** * * *
12009902 CAGGATCGATAGCATG-A-AAGGGGGCCCCGACCGATCCCTGACTTGCGCATCTCGCCCCTCTGG
649 CAGGATCGGTAGCACGCAGAA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
12009965 CCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGAGTTAGGCATATGGAGTTCATTCCCAGTCT
713 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* *
12010030 AAG-AT-C-G-G---------A-TC---G---GA-C--A--GAGGGTTGCGGCAGCACATGCTGG
778 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGTGACAGCACATGCTGG
* * * **
12010070 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCAGGGCACCATCACCGGAGCA
843 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* * * *
12010126 TCGTCGGAGAACCTGACAGGCGGCATTGGGGTTCCGGCGATC-AGGGGGCC-----GG-G-G-G-
1 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
*
12010181 ----G-TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
12010241 GAGAACTCACAACCCCTTAAAAAGGATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
12010306 TGTCTGAAATGGGG-CACTTTTTTTCAAATGATCACAAAATCTTTTACA-TATCGAGTTTTTAGC
196 TGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGC
* * *
12010369 TGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACT
259 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
12010434 CCTTCCAAAAAAATTTTAAAAAATCTTGAACCG-TAAAATTTTTGAAAATCGTGAAAAATAGAAA
324 CCTTCCGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* * * *
12010498 ACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGAACCATTGTATAAATTTAAAAGCC
388 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * * * * * *
12010563 ATAAAAAAGGCATTGGCATGCAGAAATATGAAAATGTGTCTAAGCTCACCTCCCACACTATTGAT
453 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
12010628 CCACGGCTTGCGTATCCCGTCTCTCTGGCTGGCGTACTGCCCGCCTGCCCGCCTGCCCGCTCGTT
518 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTT
* ** * * *
12010693 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCAAGGGTTGC
579 TCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* * * * * * * *
12010758 GACAGCAAGATCGGCAGCATGCAGAGGGGGACCCAGTCCATCCCCGGCTTGCGCATCCCGCCCTT
644 GGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * ** * *
12010823 CTCGCCGGCTGAGCTCCCACACACTCGTTTAATGGGTTGACTTAAGCATACGAAGTTCATTCCCA
709 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* *
12010888 GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGATAGCACAT
774 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGTGACAGCACAT
* *
12010953 GCTGGGCTCGGCCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGC-CCATCGTCGGAGCA
838 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* * * *
12011013 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCAACGATCGGGGGGGTCGGGCGGGGTGTGCG
1 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCG
* * *
12011078 CACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAGCCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
12011143 TGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
12011208 TTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
12011273 GAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * * *
12011337 CTTCCGAAAAAATTTTCAAAAGTCCTGAATCGTAAAAACTTTTGAAAA-CGTGAAAAATAGATAA
325 CTTCCGAAAAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
*
12011401 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
12011466 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
454 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
12011531 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTC
519 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCCCGCCCGCTC
* * **
12011596 GTTTCGTTGATTGGCTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCTTACCGGACCGAGGGT
576 GTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * ** * *
12011661 TGCAGAAGCAAGATCGACAGCACGCAG-AGGAGGACCCGATCGATCCCCGGCTTCCGCATCCCGC
641 TGCGGCAGCAGGATCGGTAGCACGCAGAAGG-GGACCCGGTCGATCCCCGGCTTGCGCATCCCGC
* * *
12011725 CCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATT
705 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
*
12011790 CCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGC
770 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGTGACAGC
*
12011855 ACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
834 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* * * *
12011920 TCGTCGGAGAACCTGACTGGCGGGATTGGGGTTCCGACGATC-GGGGGG-C-GGGGGGTGCGCGC
1 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
*
12011982 ACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
12012047 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTGAAG
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
12012112 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTG
196 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
12012177 AAATTTTTTTGTGCATGCCAACAAAAGTACAAGGATCACGTCTACGAAGTTTGGGGCTAAAACTC
261 -AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* *
12012242 CTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAA
325 CTTCCGAAAAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
*
12012307 CGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* ** * * *
12012372 TGAAAATGGCATTGGCACACAGAAATATGAAAATGTGCCTAAACCCACCAACCACCCGATCGATC
454 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
12012437 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCACCCGCTCATTT
519 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCCCGCTCGTTT
* *
12012502 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
580 CGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
* * * * * * * *
12012567 GCAGTAGGATCTGTAGCACAG-AGAGGGGGACCCGATCGATCCCCGGTTTGCGTATCTCGTCCCT
645 GCAGCAGGATCGGTAGCAC-GCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
12012631 CTGTCCGGCTAAGCGCCCGTACGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA
709 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * **
12012696 GTATAAGCATACGGAGTCCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTT-ACAGCAGCACA
774 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGTGA-CAGCACA
* * *
12012760 TGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGTA
837 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* *
12012822 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTGGTGTTCG
1 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCG
* * * *
12012887 TACATGATGTGCGATGGCTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
12012952 CGAGAACTCACACCCCCTTAAGGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
12013017 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * *
12013082 GAATTTTTTTGTGCATGACAACAAAAATAAAAGGATCATGTCTACCATGTTTGGGGCCAAAAATC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * ** *
12013147 CTTCTGAAAAAATTTTAAAAAATCCGAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
325 CTTCCGAAAAAATTTTAAAAAATCCG-AACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
12013212 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
12013277 TAAAAATAGCATTGGCATGCATAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATC
454 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * *
12013342 CACAGCTTGTGCATTCC--CTCTCTAGCCGACGTAGTGCCCGTCCGTCCACCCGCCCGTTCGTTT
519 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCGCTCGTTT
* ** * * * * *
12013405 TGTCGATTGGCTTAGGCATACTTAGTTCGTTCCCAGCCTAAGATTGTACCAGACCGAGGGTT---
580 CGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
* * *
12013467 --------A-CGGTAGCATGCA-AAGGGGGACCCAGTCGATCCCTGGCTTG-GACATCCCGCCCC
645 GCAGCAGGATCGGTAGCACGCAGAA-GGGGACCCGGTCGATCCCCGGCTTGCG-CATCCCGCCCC
* * *
12013521 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCAGATGGAGTTCATTCCC
708 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* **
12013586 AATCTAA-CAT-C---G---A-----A--C-----T-----GGACCGAGGGTTACGACAGCACAT
773 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGTGACAGCACAT
* * *
12013626 GCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCATTGGGGCACCATC-TCCGGAGCA
838 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-CGGAGCA
* * * * *
12013687 TCGTCGGAGAACTTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGCGTGTGCAC
1 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
* * *
12013752 ACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATTAAACCTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
12013817 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
12013882 TGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTC-AGTTCTTAGCT
196 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCT
12013946 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
12014011 CTTCCGAAAAAACTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
325 CTTCCGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
* *
12014076 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
12014141 TTAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
454 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
*
12014206 CACGGCTTTCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTT
519 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-C-CGCCCGCCCGCTCGTTT
* **
12014271 CGTCTG-TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGC
580 CGTC-GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* * * * *
12014335 GGTAGCAGAATCGGCAGCACGCAG-AGTGGG-CCTCGGTCGATCCCCGACTTGTGCATCCCGCCC
644 GGCAGCAGGATCGGTAGCACGCAGAAG-GGGACC-CGGTCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
12014398 CTTTGGCCGGCTGAGCTCCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
707 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
12014463 CAG--T---C-TA---AG---------A-TC------CGACCAGACCGAGGGTTGTGGCAGCACA
772 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGTGACAGCACA
* * * * *
12014503 TCCTGTGCTCGGGTATGTGCTGGTGTCGCA-TTTTCTTCGTC--GG-AGCATCGT-------
837 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* * * *
12014554 T----GGAGAACCTGACCGACAGGCATTGGGGTTCCGGCGATCGGGGGGGCC-AGGGGGTGTTCG
1 TCGCCGGAGAACCTGACCGGC-GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
* * *
12014614 CACATGATGTGCGGTGGGCTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCTTTCAAAC
65 CACATGATGTGCGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAAC
12014679 CTCGAGAACTCACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
128 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
12014743 AAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAG
193 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
12014808 CTGAATTTTTTTGTGAATGCCAACCAAAAATACAAGGATCACATCTA-CAAGTTTGGGGCCGAAA
258 CTGAATTTTTTTGTGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
** * **
12014872 CTCCTTCCGAAAAAGCTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGA
322 CTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGA
* * *
12014937 AAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTATATGAATTTAGAAG
386 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * * * *
12015002 CCATAAAAATGGCATTGGTACGCAGAAATATAAACATGTGCATAAACCCAGCTACCACCCTATCG
451 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * *
12015067 ATACACGGCTTACGCATCCCGTCTCTCTGGCCAGCGTAGAGCCCGGCCG-CCGACCTGCTCGTTT
516 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCCGCTCGTTT
* * * *
12015131 CATC-AGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTACGATCAGACCGGACCGAGGGTTGC
580 CGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* * * * *
12015195 GGTAGCAGGATCGGTAGCACGTAG-AGGGG-CACCTGACTGATCCCCGGCTTGCTCATCCCGCCC
644 GGCAGCAGGATCGGTAGCACGCAGAAGGGGAC-CCGGTC-GATCCCCGGCTTGCGCATCCCGCCC
* * * *
12015258 CTTTGTCCTGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
707 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
12015323 CAGTCTAAG-AT-C-G-G---------A--C-----T-----GGACCGAGGGTT-TCGACAGCAC
772 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGT-GACAGCAC
* *
12015362 ATGCTGGGCTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCA---T-------
836 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* * **
12015415 T-GCCGGAGAACCTGACCGGCGTCATTGGGGTTCCGATGATCAAGGGGG-C-GGGGGGTGTGCGC
1 TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
*
12015477 ACATGATGT--GA---------G-A--T-G----------GG-----T-GCCCTCATCAAACCTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
12015511 CAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAA
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
12015576 TGTTTGAAGTGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGGTTTTTAGCT
196 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCT
* * * *
12015640 GAATTTTTTTGTGCATACCAACCAAAATACAACGATCACGTCTACCAAGTTTGGGGCCAAAAATC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
12015705 CTTCCGAAAAAACATTTAAAAAATCCTGAATCGCAAAAATTTTTGAAAATCATGAAAAATAGAAA
325 CTTCCGAAAAAA-TTTTAAAAAATCC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* * * * *
12015770 ACTAGTCGTCTTGCCTTGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAATCC
388 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
12015835 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTACACCCACCTACCACCCTATCGAT
453 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
12015900 CCGCGGCTTGCGCATCCTGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGTCCGCT
518 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCG--C--CCGCT
*
12015965 CGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
575 CGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
12016014 TGGATCGGCA
Statistics
Matches: 9040, Mismatches: 1040, Indels: 541
0.85 0.10 0.05
Matches are distributed among these distances:
829 54 0.01
830 149 0.02
831 190 0.02
833 1 0.00
834 2 0.00
835 4 0.00
836 5 0.00
837 1 0.00
839 49 0.01
840 1 0.00
846 1 0.00
847 1 0.00
848 35 0.00
849 59 0.01
850 279 0.03
851 6 0.00
852 1 0.00
853 2 0.00
854 1 0.00
855 1 0.00
856 61 0.01
857 51 0.01
858 4 0.00
859 12 0.00
860 226 0.03
861 142 0.02
862 116 0.01
863 69 0.01
864 870 0.10
865 194 0.02
866 89 0.01
867 2 0.00
870 1 0.00
871 51 0.01
872 63 0.01
873 5 0.00
874 103 0.01
875 95 0.01
876 4 0.00
877 200 0.02
878 262 0.03
879 42 0.00
880 19 0.00
881 34 0.00
882 419 0.05
883 105 0.01
884 192 0.02
885 39 0.00
886 2 0.00
887 50 0.01
888 65 0.01
889 1 0.00
890 6 0.00
891 101 0.01
892 1 0.00
894 3 0.00
895 1 0.00
896 12 0.00
897 282 0.03
898 7 0.00
900 342 0.04
901 934 0.10
902 580 0.06
903 601 0.07
904 708 0.08
905 319 0.04
906 657 0.07
907 54 0.01
908 1 0.00
910 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTCCGAAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGA
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
GGATCGGTAGCACGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
Found at i:12008286 original size:26 final size:26
Alignment explanation
Indices: 12008250--12008302 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12008240 GTTGACTTAG
12008250 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12008276 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12008302 G
1 G
12008303 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12009168 original size:26 final size:26
Alignment explanation
Indices: 12009129--12009184 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12009119 TGGGTTGACT
12009129 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
12009155 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
12009181 TAAG
1 TAAG
12009185 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:12010905 original size:26 final size:26
Alignment explanation
Indices: 12010865--12010920 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
12010855 TGGGTTGACT
12010865 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
* *
12010891 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
12010917 TAAG
1 TAAG
12010921 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:12011577 original size:4 final size:4
Alignment explanation
Indices: 12011568--12011593 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
12011558 CCGGCGTAGT
12011568 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
12011594 TCGTTTCGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:12011810 original size:26 final size:26
Alignment explanation
Indices: 12011774--12011826 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12011764 CTTGACTTAG
12011774 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12011800 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12011826 G
1 G
12011827 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12012297 original size:906 final size:901
Alignment explanation
Indices: 12010006--12016013 Score: 7451
Period size: 864 Copynumber: 6.8 Consensus size: 901
12009996 GTTGAGTTAG
* * * * *
12010006 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* * * **
12010071 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCAGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
12010136 ACCTGACAGGCGGCATTGGGGTTCCGGCGATC-AGGGGGCCGGGGGGTGT--G--C---------
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGA
*
12010187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
12010252 ACCCCTTAAAAAGGATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12010317 GGG-CACTTTTTTTCAAATGATCACAAAATCTTTTACA-TATCGAGTTTTTAGCTGAATTTTTTT
326 GGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTT
* * * *
12010380 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
12010445 AATTTTAAAAAATCTTGAACCG-TAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
12010509 TGCCATAAAACTTCACGTGAAGGCTTAAGGAACCATTGTATAAATTTAAAAGCCATAAAAAAGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * * *
12010574 ATTGGCATGCAGAAATATGAAAATGTGTCTAAGCTCACCTCCCACACTATTGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
12010639 GTATCCCGTCTCTCTGGCTGGCGTACT-GCCCGCCTGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTG
* * * **
12010703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TAGATCGGATCAAGGGTTGCGACAGCAAG
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCT-GACCGGACCGAGGGTTGCGGTAGCAAG
* * * *
12010767 ATCGGCAGCATGCAGAGGGGGACCC-AGTCCATCCCCGGCTTGCGCATCCCGCCCTTCTCGCCGG
778 ATCGGCAGCACGCAGA-GGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * ** * *
12010831 CTGAGCTCCCACACACTCGTTTAATGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATTCCCA-TCTAA
* *
12010894 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* *
12010959 CTCGGCCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGC-CCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** *
12011023 ACCTGACCGGCGGCATTGGGGTTTCAACGATCGGGGGGGTCGGGCGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-CCGG-GGGGTGTGCGCACATGATGT
* * * *
12011088 -ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAGCCTTGAAAACTC
194 GA-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12011152 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12011217 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
12011282 TGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * * *
12011346 AAATTTTCAAAAGTCCTGAATCGTAAAAACTTTTGAAAA-CGTGAAAAATAGATAATGAGTCGTC
453 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
12011410 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
12011475 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
12011540 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * *
12011605 ATTGGCTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCTTACCGGACCGAGGGTTGCAGAAGC
710 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTGCGGTAGC
* * *
12011670 AAGATCGACAGCACGCAGAGGAGGACCCGATCGATCCCCGGCTTCCGCATCCCGCCCCTCTAGCC
775 AAGATCGGCAGCACGCAGAGG-GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
12011735 AGCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
839 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATTCCC-ATCTAA
12011800 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
*
12011865 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
12011930 ACCTGACTGGCGGGATTGGGGTTCCGACGATC-GGGGGG-CGGGGGGTGCGCGCACATGATGTGA
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGA
12011993 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12012058 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTGAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12012123 GGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTG
* * * *
12012188 TGCATGCCAACAAAAGTACAAGGATCACGTCTACGAAGTTTGGGGCTAAAACTCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
12012253 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
12012318 GGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
12012383 TTGGCACACAGAAATATGAAAATGTGCCTAAACCCACCAACCACCCGATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
12012448 CATCCCGTCTCTCTGGCCGGCGTAGT-GCCCGCCCACCCGCCCACCCGCTCATTTCGTCGGTTGG
650 CATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGG
* * * * *
12012512 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTGCGGTAGCAAGAT
* * * * * * *
12012577 CTGTAGCACAG-AGAGGGGGACCCGATCGATCCCCGGTTTGCGTATCTCGTCCCTCTGTCCGGCT
780 CGGCAGCAC-GCAGA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
12012641 AAGCGCCCGTACGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTATAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATTCCCA-TCTAA
* * * **
12012702 GCATACGGAGTCCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTT-ACAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGA-CAGCACATGCTGG
* * * *
12012766 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGTATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
12012831 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTGGTGTTCGTACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGG-GGTGTGCGCACATGATG
* * * *
12012896 TGCGATGGCTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTC
193 TGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
12012961 ACACCCCCTTAAGGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
12013026 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
12013091 TGTGCATGACAACAAAAATAAAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCCTTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** *
12013156 AAATTTTAAAAAATCC-GAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
453 AAATTTTAAAAAATCCTG-AACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
12013220 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATA
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
12013285 GCATTGGCATGCATAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACAGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * * *
12013350 GTGCATTCC--CTCTCTAGCCGACGTAGT-GCCCGTCCGTCCACCCGCCCGTTCGTTTTGTCGAT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGAT
** * * * *
12013412 TGGCTTAGGCATACTTAGTTCGTTCCCAGCCTAAGAT-TGTACCAGACCGAGGGTTACGGTAGC-
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTG-ACCGGACCGAGGGTTGCGGTAGCA
*
12013475 --AT--GCA--A---AG-GGGGACCC-AGTCGATCCCTGGCTTG-GACATCCCGCCCCTCTGGCC
776 AGATCGGCAGCACGCAGAGGGGACCCGA-TCGATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCC
12013528 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG----A--CATA-G-G-----------C--A
839 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCCCATCTAA
* * * * **
12013570 G-AT--GGAGTTCATTCCCAATCTAACATCGAACTGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* * *
12013632 CTCGGGCATTTGCTGGTGCCGCATTTTTCTTCATTGGGGCACCATC-TCCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-CGGAGCATCGTCGGAG
* *
12013696 AACTTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGCGTGTGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGT
* * *
12013761 GCA-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATTAAACCTCAAGAACTC
194 G-AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
12013825 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12013890 ATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTC-AGTTCTTAGCTGAATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTT
12013954 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
12014019 AAAACTTTAAAAAAT-CTCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCG
452 AAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
* *
12014083 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATTAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
12014148 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
12014213 TTCGCATCCCGTCTCTCTGGCCGGCGTAGT-GCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCTG
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC-G
* * **
12014277 -TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGTAGC
710 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTGCGGTAGC
* * * *
12014341 -AGAATCGGCAGCACGCAGAGTGGG-CCTCGGTCGATCCCCGACTTGTGCATCCCGCCCCTTTGG
775 AAG-ATCGGCAGCACGCAGAG-GGGACC-CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
12014404 CCGGCTGAGCTCCCGCACG--C---T--T--GTT---TT--G--T-GG-GTTGA----C-T-TAG
837 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCCCATCTAA
* * * * *
12014445 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGTGGCAGCACATCCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* * *
12014510 CTCGGGTATGTGCTGGTGTCGCA---TT-TTC-T----------TCGTCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
12014560 ACCTGACCGACAGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTTCGCACATGATGTG
131 ACCTGACCGGC-GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
12014625 CGGTGGGCTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCTTTCAAACCTCGAGAACTC
195 AGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACTC
12014690 ACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12014754 ATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
12014819 TGTGAATGCCAACCAAAAATACAAGGATCACATCTA-CAAGTTTGGGGCCGAAACTCCTTCCGAA
388 TGTGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** ** **
12014883 AAAGCTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
12014948 CTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTATATGAATTTAGAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * * *
12015013 GCATTGGTACGCAGAAATATAAACATGTGCATAAACCCAGCTACCACCCTATCGATACACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
12015078 ACGCATCCCGTCTCTCTGGCCAGCGTAG-AGCCCG---G-CCG-CCGACCTGCTCGTTTCATC-A
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCG-CCCGCTCGTTTCGTCGA
* * *
12015136 GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTACGATCAGACCGGACCGAGGGTTGCGGTAGC
711 -TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTGCGGTAGC
* * * * * * *
12015201 AGGATCGGTAGCACGTAGAGGGGCACCTGA-CTGATCCCCGGCTTGCTCATCCCGCCCCTTTGTC
775 AAGATCGGCAGCACGCAGAGGGG-ACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
12015265 CTGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGAC-T-----T---AG---------------
838 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCCCATCTAA
*
12015305 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT-TCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGT-GACAGCACATGCTGG
* *
12015369 GCTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCAT--T----G---C--CGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* ** **
12015423 AACCTGACCGGCGTCATTGGGGTTCCGATGATCAAGGGGG-CGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
12015487 AGA-------T-G-----GG---------T-G--------CCCTCATCAAACCTCCAGAACTCAC
195 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
12015521 ACCCGCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAGT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12015586 GTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGGTTTTTAGCTGAATTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTT
* * * *
12015650 GTGCATACCAACCAAAATACAACGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
12015715 AACATTTAAAAAATCCTGAATCGCAAAAATTTTTGAAAATCATGAAAAATAGAAAACTAGTCGTC
454 AA-TTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
12015780 TTGCCTTGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12015845 CATTGGCATGCAGAAATATGAAGATGTGCCTACACCCACCTACCACCCTATCGATCCGCGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12015910 CGCATCCTGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGTCCGCTCGTTTCATCG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
12015975 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
710 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
12016014 TGGATCGGCA
Statistics
Matches: 4519, Mismatches: 457, Indels: 337
0.85 0.09 0.06
Matches are distributed among these distances:
829 54 0.01
830 147 0.03
831 190 0.04
835 4 0.00
838 2 0.00
839 53 0.01
840 4 0.00
848 2 0.00
853 1 0.00
854 1 0.00
859 8 0.00
860 211 0.05
861 4 0.00
862 24 0.01
863 77 0.02
864 875 0.19
865 207 0.05
866 96 0.02
867 5 0.00
868 5 0.00
869 10 0.00
870 1 0.00
871 5 0.00
873 4 0.00
874 3 0.00
875 4 0.00
876 5 0.00
877 3 0.00
878 118 0.03
879 1 0.00
882 1 0.00
883 1 0.00
885 4 0.00
887 51 0.01
888 102 0.02
889 3 0.00
890 9 0.00
891 65 0.01
892 1 0.00
893 2 0.00
894 1 0.00
896 1 0.00
898 2 0.00
900 2 0.00
901 2 0.00
902 543 0.12
903 525 0.12
904 56 0.01
905 305 0.07
906 664 0.15
907 55 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGA
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTGCGGTAGCAAGATC
GGCAGCACGCAGAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCCCATCTAA
Found at i:12012712 original size:26 final size:26
Alignment explanation
Indices: 12012676--12012728 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12012666 GTTGACTTAG
* *
12012676 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTCCATTCCCAGTATAA
* *
12012702 GCATACGGAGTCCATTCCTAGTCTAA
1 GCATACGGAGTCCATTCCCAGTATAA
12012728 G
1 G
12012729 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTATAA
Found at i:12014260 original size:12 final size:12
Alignment explanation
Indices: 12014243--12014267 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12014233 CCGGCGTAGT
12014243 GCCCGCCCGCTC
1 GCCCGCCCGCTC
12014255 GCCCGCCCGCTC
1 GCCCGCCCGCTC
12014267 G
1 G
12014268 TTTCGTCTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.64, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:12016542 original size:26 final size:26
Alignment explanation
Indices: 12016504--12016559 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12016494 TGGGTTGACT
12016504 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
12016530 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12016556 TAAG
1 TAAG
12016560 ATCGGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:12018628 original size:26 final size:26
Alignment explanation
Indices: 12018577--12018629 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12018567 GTTGACTTAG
* *
12018577 GCATACGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATTCCCAACCTAA
*
12018603 GCATAAGGAGTTCATTCCCAGCCTAA
1 GCATAAGGAGTTCATTCCCAACCTAA
12018629 G
1 G
12018630 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAACCTAA
Found at i:12020408 original size:26 final size:26
Alignment explanation
Indices: 12020372--12020424 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12020362 GTTGACTTAG
12020372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12020398 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12020424 G
1 G
12020425 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12020583 original size:900 final size:899
Alignment explanation
Indices: 12018406--12025646 Score: 9585
Period size: 899 Copynumber: 8.1 Consensus size: 899
12018396 CTGGGCATTT
* *
12018406 TCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTG-AGG
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCA-G
* * * * * * *
12018470 TAGCAGGATCGACAGCACACAGAGGGGGACTTGGCCGATCCCTGGCTTGCGCATCTCGCCCCTTT
65 CAGCAGGATCGACAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* ** *
12018535 GGCCGACTGAGCGCTTGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAAT
130 GGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
12018599 CTAAGCATAAGGAGTTCATTCCCAGCCTAAGATCGGACTGGACCAAGGGTTGCGGCAACACATGC
195 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * ** ** * *
12018664 TAGGCTCAGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGTACCATCGTCGGAGCATCG-CT
260 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTC-
* * ** *
12018728 GGAGAACCTGACCGGCGGCTTTGGGTTCCGGTGATC-GGGGGGCCGGGAGGTGTGCGCACATGAT
324 GGAGAACCTGACCGGCGGCATTGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
*
12018792 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTAT-CCTCATCAAACCTTGAGAACT
389 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
12018855 CACACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTACCAGTAGCCGGTTAAAGTGTCTG
454 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTG
* *
12018919 AAATGGGGACACTTTTTTCAAATGGTAAC-AAATCTTGTACACTTCGATTTTTTAGCTGAA-TTT
518 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
12018982 TTTGGGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGACCAAAAATCCTTACGA
583 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
12019047 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAACTAGAAAACAAGTCG
648 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
12019112 TCTTGCTATGAATCTTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
713 TCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
12019177 TGGCATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
777 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
12019242 TTGCGCATTCCATCTCTCTGGCTGGACATAGTGCACACCCGCCCGCCT-GCTCGTTTCG
842 TTGCGCATCCCGTCTCTCTGGCT-GACGTAGTGCCCGCCCGCCCGCCTCGCTCGTTTCG
* * *
12019300 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-GGACCAGACCGAGGGTTGCAGT
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGC
* * *
12019364 AGCAGGATCGATAGCACGTAGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCCCGCCCCCTCT
66 AGCAGGATCGACAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCG-CCCCTCT
* * * * * *
12019429 GGCGGGCTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
130 GGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * **
12019494 CTAAGCATA-GGAGTTCATTCCCAGTCTAATATCGGACCGGACCGAGGGTTCCAACAGCACATGC
195 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * * * *
12019558 TGGGCTCGGGCAT-TTTCTGGTGTCGCA-TTTTCTTCGCCAGGTCACCATCGCTGGAGCATCGCC
260 TGGGCTCGGGCATGTGT-TGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTC
* * * * *
12019621 GAGAGAACGTCACCGACGGCATTGGGGTTCGACAATCGGGGGGGCCGGGGGGGTGTGCGCACATG
324 G-GAGAACCTGACCGGCGGCATTGGGTTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATG
* * *
12019686 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATGAAACCTCGAGAA
387 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
12019751 CTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAATGTGTCT
452 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
12019816 GAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
517 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
12019881 TTTTGTGAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAAA-TCATTCC
582 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCC
* *
12019945 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGT
646 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
12020010 CGTCTTGCCATGAAACATCACGTGAAGGTTTAAGGGACCATTGTATGATTTTACAAGCCATAAAA
711 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
12020075 ATGGCATTGGCATACAGAAATATGAAAATGTACCTAAACCCACCTACCACCCTATCGATCCACAG
776 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
12020140 CTTGCGCATCCCGTCTCTCTGGCTGATGTAGTGCCCGCCCGCCCGCCTGCTCGCTCGTTTCG
841 CTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCG-C--CTCGCTCGTTTCG
* * ** *
12020202 TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACAGC
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGC
* * * * *
12020267 AGCAGGATCGGCAGCA-GCAGAGGGGGAC-CTGGCCAATCCCCAGCTTACGCAT-CCGCCCCTCT
66 AGCAGGATCGACAGCACGCAGAGGGGGACTC-GGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
*
12020329 GGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
130 GGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * ** *
12020394 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGACTTGCGGTAGCACATGC
195 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* *
12020459 TGGGCTCGGGCATGTGTTGGGGCCGCATTTTTCTTCACCGGGGCACCATTGCCGGAGCATCGTCG
260 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCG
12020524 GAGAACCTGA-CGGCGGCATTGCGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
325 GAGAACCTGACCGGCGGCATTG-GGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
*
12020588 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACT
389 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
12020653 CACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
454 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
12020718 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTT
519 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** *
12020782 TTGTGCATGCCAAGGAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCCGA
584 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGA
* **
12020847 AAAAATTTTAAAAAATCTCGAACCGCT-AAAAGTTTTTGAAAATCATGAAAAATAGAAAACGAGT
648 AAAAATTTTAAAAAATCCCGAACCG-TAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGT
* * * *
12020911 CGTCTTTGCCCTGAAACTTCACGTCAAGGCTTAAGGGA-CGTCGTATGAATTTACAAGCCATAAA
711 CGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
12020975 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACG
775 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * **
12021040 GCTTGCGCATCCTGTCTCTCTGG-TCGGCATAGTGCCCGCCCGTCCG-TTCGCTCGTTTTA
840 GCTTGCGCATCCCGTCTCTCTGGCT-GACGTAGTGCCCGCCCGCCCGCCTCGCTCGTTTCG
* * * * * ** *
12021099 TCGGTTGGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCAGATCGGGCCAAGGGTGGTGGT
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGC
* ** * * ** * *
12021164 AGCAAGATCGGTAGCACGTAGAGGGGCACTCGACCGATCCCCGGCATGCGCATCCCACCCCTCTG
66 AGCAGGATCGACAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * *
12021229 GTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCGCAGTC
131 GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ** * *
12021294 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCACATGCT
196 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * ** ** *
12021359 AGGCTCGGGCACGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTTGAGCATCGTCAG
261 GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGG
** * ** *
12021424 AGAACCTGA-CGGCGGCATTGCGGTTTCGGTGATCAGAAGGGCCGGGGGGTGTGCCCACATGATG
326 AGAACCTGACCGGCGGCATTG-GGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* ** *
12021488 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCATGCCTTGAGAACTC
390 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12021553 ACACCCCCTTAGAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
455 ACACCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
12021617 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
519 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
12021682 TTGTGCATGCCAAAAAAAATACAAGGATCACATCTAGCAAGTTTGGTGCCAAAAATCCTTTCGAA
584 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-A
** *
12021747 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTTAAAAATAGAAAACGAGTC
648 AAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
12021812 ATCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
712 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** **
12021877 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGTGGC
777 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
12021942 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCACCCGTCCGGCCGCTCGTTTCG
842 TTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCG-CC--TCGCTCGTTTCG
* ** * * ** * * *
12022003 TCGGCTGGCTTAGGCATACAAAGTTCATTGCTAGTCTAAGATTGGACCGGACTGAGGGTTACGGC
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGC
* * * * * * * * * **
12022068 AGCAAGATTGGCAGCATGTAGAGGGGGACCCGATCGATTCCCGGCTTGCGCATTCCTTCCCTCTG
66 AGCAGGATCGACAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
12022133 GCCGGCTGAGCACCCGCACGCACGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
131 GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
12022198 TAAG-AT-C--AG---------A--C------C-G---GG-CCGAGGGTTGCGGCAGCACATGCT
196 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* ** *
12022237 GGGCTCGGGCTTGTGTTGGTGCCGCATTTTTCTTCATTGGGGCACCATCGCCGGAGCATCGCCGG
261 GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGG
* * * * * **
12022302 AAAACCTGACCGGCGACATTGGGATTCCAATGATCGGATGGGCCGGGGGGTGTGCGCACATGATG
326 AGAACCTGACCGGCGGCATTGGG-TTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * * **
12022367 TGCGATAGGTGCTGGTAGTTGGACCTTATATTTTCCCCCTATCCCTCATCAAACCTCGAGAACTC
390 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
12022432 ACACCCCCTTAAAAAGCTTTTAAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAA
455 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * * *
12022497 AT-GGGACACTTTTTTGAAAAGGTCAAAAAATCTTATACACTTCGAGTTTTTGGCTTAATTTTTT
520 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
12022561 TATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
585 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
12022626 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
650 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12022691 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGG
715 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
12022756 CATTGGCAGGCAAAAATAT-AGAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTT
780 CATTGGCATGCAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12022820 GCGCATCACGTATCTCTGGC-CA-GTA-TAG--TGCCCGCCCGCC-CGCTCGTTTCG
844 GCGCATCCCGTCTCTCTGGCTGACGTAGT-GCCCGCCCGCCCGCCTCGCTCGTTTCG
* * * ** * *
12022871 TCAGTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGC
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGC
** * *
12022936 AGCACCATCGATAGCACACAGAGGGGGAC-CTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
66 AGCAGGATCGACAGCACGCAGAGGGGGACTC-GGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * *
12023000 GGCCGACCGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTCCATTCCCAGT
130 GGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
12023065 CTAAGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGTTTGTGGTAGCACATGC
195 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * *
12023130 TGGGCTTGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATTGTCGGAGCGTCATCG
260 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCG
* * *
12023195 GAGAACCTGA-C--C-G-A--CGG---C-A--ATC-GGGGGCCCGGAGGGGTGTGCACACATGAT
325 GAGAACCTGACCGGCGGCATTGGGTTTCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGAT
**
12023246 GTGCGATGCATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
389 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
12023311 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
454 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
12023376 AATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTAAATTTTT
519 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
12023441 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTTCGAA
584 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * * * *
12023506 AAAATTTAAAAAAATCTCGAACTGCAAGAATTTTCAAAAATCATGAAAAATAGAAAATGTGTCGT
649 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
12023571 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATG
714 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
12023636 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
779 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
12023701 GCGCATCCCATCTCTCTGGCCTG-TGTAGTGCCCGGCCGCCCGCTCGTTCGCTCGTTTCG
844 GCGCATCCCGTCTCTCTGG-CTGACGTAGTGCCCGCCCGCCCGC-C--TCGCTCGTTTCG
* * * * * *
12023760 TCGGTTGGTTTAGGTATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGT
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGC
* *
12023825 AGCAGGATCGACAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTG
66 AGCAGGATCGACAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
*
12023890 GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
131 GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * *
12023955 TAAGCATACAGAGTTCATTCGCAGTCTAAGATTGGGCCAGACCGAGGGTTACGGTAGCACATGCC
196 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * *
12024020 GGGCTCGAGCATGTGTTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGG
261 GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGG
* * * * * *
12024085 TGAACCTAACTGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTACGCACATGATG
326 AGAACCTGACCGGCGGCATT-GGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* ** * *
12024150 TGTGATGGGTGCTATTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAAGTC
390 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
12024215 ACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACAATTAAAGTGTCTGAA
455 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * * *
12024280 ATGAGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAAGTTGACTTTTTT
520 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
12024345 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
585 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
12024410 AAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAGTCATGAAAAATAAAAAACGAGTCGTC
650 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
12024475 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAACTTACAAGCCAAAAAAATGG
715 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
12024540 CATTGGCATGCAGAAATATGAAGATGTGCC-AAATCCCACCTACCACCCTATTGATCCACGGCTT
780 CATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCACGGCTT
* *
12024604 GCGCATCCCGTCTTTCTGG-TCGGCGTAGTGCCCGCCCGCCCGCCT-GCTCGTTTCG
844 GCGCATCCCGTCTCTCTGGCT-GACGTAGTGCCCGCCCGCCCGCCTCGCTCGTTTCG
* * * * * * *
12024659 TTGGTTGGCTTAGGAATACGGAGTTTATTTCTAGTCTGAGATC-GAACTGGACCGAGGGTTGCAG
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCAG
* * ** * * *
12024723 CAGCAGAATCGATAGCACATAGAGGGTGACTCGGTCGATCCCCAGCTTGTGCATCCCGCCCCTCT
65 CAGCAGGATCGACAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * *
12024788 GGCAGACCGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTACGCATACGGAGTTCATTCCTAGT
130 GGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * *
12024853 CTAAGCATACGGAGTTTATTCCCAGTCTACGATCGGATCGGACGGAGGGTTGTGGTAGTACAGGC
195 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * **
12024918 TGGGCTCGGGCATGTGTTGGTGCCGCATTTCTCTTCACCAGGGCACCATCGCCGGAGCATCACCG
260 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCG
*
12024983 GAGAACCTGACCAGCGGCATTAGGGTTTCGACGATC--GGGGGCCGAGGGGG-GTGCGCACATGA
325 GAGAACCTGACCGGCGGCATT-GGGTTTCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGA
* *
12025045 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGACAAC
388 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
12025110 TCACACCCCCTTAAAGAGCATTTGAGATTTCACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
453 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
12025175 AAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
518 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * **
12025239 TTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTAA
583 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
12025304 AAAAATTTT-TAAAATCCCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
648 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
12025368 TCTGGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAAT
713 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
12025433 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
778 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
12025498 TACGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGCTCGTTTTG
843 TGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCG--C-CTCGCTCGTTTCG
* ** * *
12025558 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGATTGGACCGAGGGTCGCGGT
1 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-
* *
12025623 CAACAGGATCGACAGCACGTAGAG
65 CAGCAGGATCGACAGCACGCAGAG
12025647 TTTTTAGCTG
Statistics
Matches: 5566, Mismatches: 663, Indels: 230
0.86 0.10 0.04
Matches are distributed among these distances:
867 1 0.00
868 181 0.03
869 2 0.00
870 1 0.00
871 2 0.00
872 9 0.00
873 1 0.00
874 4 0.00
875 2 0.00
876 190 0.03
877 10 0.00
878 201 0.04
879 168 0.03
880 142 0.03
881 308 0.06
882 4 0.00
883 7 0.00
884 1 0.00
885 9 0.00
886 1 0.00
887 2 0.00
889 303 0.05
890 2 0.00
891 2 0.00
892 1 0.00
893 100 0.02
894 250 0.04
895 251 0.05
896 171 0.03
897 232 0.04
898 145 0.03
899 1056 0.19
900 694 0.12
901 279 0.05
902 147 0.03
903 500 0.09
904 187 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGC
AGCAGGATCGACAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGG
AGAACCTGACCGGCGGCATTGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCTCGCTCGTTTCG
Found at i:12021308 original size:26 final size:26
Alignment explanation
Indices: 12021271--12021323 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12021261 GTTGACTTAG
* *
12021271 GCATACGTAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12021297 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12021323 G
1 G
12021324 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12023079 original size:26 final size:26
Alignment explanation
Indices: 12023043--12023095 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12023033 GTTGACTTAG
12023043 GCATACAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
* *
12023069 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
12023095 G
1 G
12023096 ACCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:12023968 original size:26 final size:26
Alignment explanation
Indices: 12023932--12023984 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12023922 GTTGACTTAG
*
12023932 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12023958 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12023984 G
1 G
12023985 ATTGGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12024605 original size:903 final size:897
Alignment explanation
Indices: 12022175--12025646 Score: 4801
Period size: 903 Copynumber: 3.9 Consensus size: 897
12022165 GTTGACTTAG
* *
12022175 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGGCCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* ** * *
12022240 CTCGGGCTTGTGTTGGTGCCGCATTTTTCTTCATTGGGGCACCATCGCCGGAGCATCGCCGGAAA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * *
12022305 ACCTGACCGGCGACATT-GGGATTCCAATGATCGGATGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTAGGG-TTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTG
* * * **
12022369 CGATAGGTGCTGGTAGTTGGACCTTATATTTTCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12022434 ACCCCCTTAAAAAGCTTTTAAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * * *
12022499 -GGGACACTTTTTTGAAAAGGTCAAAAAATCTTATACACTTCGAGTTTTTGGCTTAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
12022563 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
*
12022628 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAA-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12022693 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12022758 TTGGCAGGCAAAAATAT-AGAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 TTGGCATGCAAAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12022822 GCATCACGTATCTCTGGCC-AGTA-TAG--TGCCCGCCCGCC-CGCTCGTTTCGTCAGTTGGCTT
647 GCATCCCGTCTCTCTGGCCGCGTAGT-GCCCGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGCTT
* ** * * **
12022882 AGGCATACAGAGTTCATTCTCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCACCATCGA
711 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGA
* * *
12022947 TAGCACACAGAGGGGGAC-CTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACCGAG
776 CAGCACATAGAGGGGGACTC-GGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACCGAG
* * *
12023011 CACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTCCATTCCCAGTCTAA
840 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12023069 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGTTTGTGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * *
12023134 CTTGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATTGTCGGAGCGTCATCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
12023199 ACCTGA-C--C-G----ACGG---C-A--ATCGGGGGCCCGGAGGGGTGTGCACACATGATGTGC
131 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGG-GGGGTGTGCGCACATGATGTGC
**
12023250 GATGCATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
12023315 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12023380 GGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12023445 GCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTTCGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
* * * * * *
12023510 TTTAAAAAAATCTCGAACTGCAAGAATTTTCAAAAATCATGAAAAATAGAAAATGTGTCGTCTTG
455 TTTTAAAAAATCCCGAAC-GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
12023575 CCATGAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
12023640 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
584 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
12023705 ATCCCATCTCTCTGGCCTGTGTAGTGCCCGGCCGCCCGCTCGTTCGCTCGTTTCGTCGGTTGGTT
649 ATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGC-C--TCGCTCGTTTCGTCGGTTGGCT
* * * *
12023770 TAGGTATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGTAGCAGGATCG
710 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCG
* * *
12023835 ACAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
775 ACAGCACATAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACCGAG
12023900 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
12023958 GCATACAGAGTTCATTCGCAGTCTAAGATTGGGCCAGACCGAGGGTTACGGTAGCACATGCCGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * ** *
12024023 CTCGAGCATGTGTTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGTGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * * *
12024088 ACCTAACTGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGT
131 ACCTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
** * *
12024153 GATGGGTGCTATTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAAGTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12024218 CCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACAATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * * *
12024283 AGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAAGTTGACTTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
12024348 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
* *
12024413 TTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAGTCATGAAAAATAAAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAAC-GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
12024478 CCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAACTTACAAGCCAAAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
12024543 TGGCATGCAGAAATATGAAGATGTGCC-AAATCCCACCTACCACCCTATTGATCCACGGCTTGCG
584 TGGCATGCAAAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12024607 CATCCCGTCTTTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCT-GCTCGTTTCGTTGGTTGGCTTA
648 CATCCCGTCTCTCTGG-CCGCGTAGTGCCCGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
12024671 GGAATACGGAGTTTATTTCTAGTCTGAGATC-GAACTGGACCGAGGGTTGCAGCAGCAGAATCGA
712 GGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCAGCAGCAGGATCGA
* * * *
12024735 TAGCACATAGAGGGTGACTCGGTCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCAGACCGAGC
776 CAGCACATAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACCGAGC
* * *
12024800 ACCCGCACGCTCGTTTCGTGGGTTAACTTACGCATACGGAGTTCATTCCTAGTCTAA
841 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
12024857 GCATACGGAGTTTATTCCCAGTCTACGATCGGATCGGACGGAGGGTTGTGGTAGTACAGGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
* *
12024922 CTCGGGCATGTGTTGGTGCCGCATTTCTCTTCACCAGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
* *
12024987 ACCTGACCAGCGGCATTAGGGTTTCGACGATC-GGGGGCCGAGGGGG-GTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTGC
* *
12025050 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGACAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12025115 CCCCCTTAAAGAGCATTTGAGATTTCACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12025180 GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12025244 GCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCC-TTCTAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAA
* * * *
12025308 ATTTT-TAAAATCCCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTG
454 ATTTTAAAAAATCCCGAA-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12025372 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12025437 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
583 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
12025502 CATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGCTCGTTTTGTCGGTTGGC
648 CATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCCGCCCG--C-CTCGCTCGTTTCGTCGGTTGGC
* * ** * * *
12025567 TTAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGATTGGACCGAGGGTCGCGGTCAACAGGAT
709 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-CAGCAGGAT
*
12025632 CGACAGCACGTAGAG
773 CGACAGCACATAGAG
12025647 TTTTTAGCTG
Statistics
Matches: 2269, Mismatches: 265, Indels: 82
0.87 0.10 0.03
Matches are distributed among these distances:
879 6 0.00
880 145 0.06
881 308 0.14
882 2 0.00
883 5 0.00
884 1 0.00
885 9 0.00
886 1 0.00
887 2 0.00
889 300 0.13
890 1 0.00
891 1 0.00
892 1 0.00
893 2 0.00
894 121 0.05
895 205 0.09
896 117 0.05
897 151 0.07
898 8 0.00
899 378 0.17
900 23 0.01
902 4 0.00
903 468 0.21
904 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAT
TTTAAAAAATCCCGAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGCGTAGTGCCCGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCA
CATAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACCGAGCACCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12024867 original size:26 final size:26
Alignment explanation
Indices: 12024831--12024881 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12024821 GTTAACTTAC
*
12024831 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12024857 GCATACGGAGTTTATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
12024882 CGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12028270 original size:26 final size:27
Alignment explanation
Indices: 12028220--12028272 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
12028210 GGTGACTTAG
12028220 GCATACAGAGTTCTAATTCTCAGTCTA
1 GCATACAGAGTTCTAATTCTCAGTCTA
*
12028247 GCATACGGAGTTC-AATTCGT-AGTCTA
1 GCATACAGAGTTCTAATTC-TCAGTCTA
12028273 AGATCAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (27 bp):
GCATACAGAGTTCTAATTCTCAGTCTA
Found at i:12029998 original size:26 final size:26
Alignment explanation
Indices: 12029961--12030018 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
12029951 CGTGGGTTGA
* *
12029961 CTAAGGCATACGGAGTTCATTCCTAGT
1 CTAA-GCATACGGAGTTCATTCCCAGC
12029988 CTAAGCATACGGAGTTCATTCCCAGC
1 CTAAGCATACGGAGTTCATTCCCAGC
12030014 CTAAG
1 CTAAG
12030019 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGC
Found at i:12030896 original size:26 final size:26
Alignment explanation
Indices: 12030860--12030912 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12030850 GTTGACTTAG
12030860 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
12030886 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12030912 G
1 G
12030913 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12032178 original size:907 final size:889
Alignment explanation
Indices: 12029108--12033074 Score: 5468
Period size: 907 Copynumber: 4.4 Consensus size: 889
12029098 TTGACTTAGC
* *
12029108 CATACGGAGTTCATTTCCCAGTCTAAGATCGGATCGGACCGAGGGCTACGGTAGCACATGCT-GG
1 CATACGGAGTTCA-TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGG
* * * * * *
12029172 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCTCCAAGGCACCA-TCA-C-CGGAGAACTTGACC
65 CTCGGGCATGTGATGGTGCCGCATTTTTCTTCGCC-GGGGACCACTCATCGCGGAGAACCTGACC
* ** * *
12029234 GGCGGCATTGGGGTTTTGACGATCGG-GAGGGCCGGGGGGGTGTGCTCACATGATGTGCGATGGG
129 GGCAGCATTGGGGTTCCGACGATCGGAG-GGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
** * * * *
12029298 TAATGGTACTTGGCCCTTATATTGGCCCCCTATCCTTTATCAATCCTCAAGAACTCACACCCCCT
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
12029363 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
12029428 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAATTTGTTTGCGCATGC
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTGTGCATGC
* * *
12029493 CAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTGCCGAAAAAATTTTAA
387 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAA
* *
12029558 AAAATCTCGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
452 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
**
12029623 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCATTGGCAT
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-
* * * *
12029688 GCAT--AAATATGAAGATGTGGCTATACCCACCTACCACCCTATCGATCCACAGCTTGTGCATCC
581 -CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
12029751 CGTCTCTCTGACCGGCGTAGT----GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
645 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
12029812 CGGAGTTCATTCCCAGTCTAAGATTGGACAGGATCGAGGGTTGTGGTAGCAGGATCGGTAGCACA
710 CGGAGTTCATTCCCAATCTAAGATCGGACA-GATCGAGGGTTGTGGTAGCAAGATCGGCAGCACG
* * * **
12029877 CAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCTGCACCTCTGGCCGGCTGAATGCCCGCA
774 CAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCAGCCCCTCTAGCCGGCTGAGCGCCCGCA
* * * *
12029942 CACTTGTTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCCTAGTCTAAG
839 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
12029993 CATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGGC
* * * * *
12030058 TCGGGCATGTGCTGGTTCCGCATTTTTCTTCGTCGGGGCACCA-GCATCGCCGGAGAAGCTGACC
66 TCGGGCATGTGATGGTGCCGCATTTTTCTTCGCCGGGG-ACCACTCATCG-CGGAGAACCTGACC
*
12030122 GACAGCATTGGGGTTCCGACGATCGGAGGGGCCGAGGGGGGTGTGCGCACATGATGTGTGATGGG
129 GGCAGCATTGGGGTTCCGACGATCGGAGGGGCCG-GGGGGGTGTGCGCACATGATGTGTGATGGG
* *
12030187 TGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTT
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
12030252 TAAAGAGCATTTGACATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATCGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACA
12030317 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGC
* *
12030382 CAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAA
387 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAA
*
12030446 AAAATCTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
452 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * *
12030511 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCAGAAAAGTGGCATTGGCAT
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
**
12030576 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
582 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
12030641 TCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCACCCGCTCGTTTCATCGGTTGGCTTAGGCAT
647 TCTCTCTGGCCGGCGTAGTGCCCGCC--CGC-CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
12030706 ACGGAGTTCATTCCTGAA-CTAAGATCGAACCAGATAGAGGGTTGTGG-AGTAGGATCGACAGCA
709 ACGGAGTTCATTCC-CAATCTAAGATCGGA-CAGATCGAGGGTTGTGGTAGCAAGATCGGCAGCA
* * ** *
12030769 CGCAGAGGGGGACCCAACCGATCCCCGGCTTGTGCATCCTA-CCCCTCTAGCCGGTTGAGCGCCC
772 CGCAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCC-AGCCCCTCTAGCCGGCTGAGCGCCC
* *
12030833 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAG
836 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
12030887 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGATAGCAGATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGGC
* *
12030952 TCGGGCATGT-ACTGGTGTCGCATTTTTCTTCGCCAGGGTACCA-TCA-C-CGGAGAACCTGACC
66 TCGGGCATGTGA-TGGTGCCGCATTTTTCTTCGCC-GGGGACCACTCATCGCGGAGAACCTGACC
* * * * * *
12031013 AGCTGCATTGGGGTTCGGGCGATTGG-GGGCGTCGGGGGGGTGTGCGCACATGATGTGTGATGGG
129 GGCAGCATTGGGGTTCCGACGATCGGAGGG-GCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
* *
12031077 TGCTGGTACTTGGCCCTTATCTTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCT
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
12031142 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCTTTAAAGTGTCTGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACA
*
12031207 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTCATGCATGC
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-GTGCATGC
* * * *
12031272 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGTCCCAAAACACCTTTCGAAAAAATTTTAA
387 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAA
* *
12031337 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
452 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
12031402 AACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
12031467 ATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCG
582 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
12031532 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCA
647 TCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCA
*
12031597 TACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCAAGATCGGCAGCA
708 TACGGAGTTCATTCCCAATCTAAGATCGGA-CAGATCGAGGGTTGTGGTAGCAAGATCGGCAGCA
* ** * * * *
12031662 CGTAGAGGGGGACCCGGTCGATCCTTGGGTTACACATCCAGCCCCTCTGGCCGGCTGAGCGCCCG
772 CGCAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCAGCCCCTCTAGCCGGCTGAGCGCCCG
* * * * *
12031727 CACGCTTGTTTCTTGGGTTGACTTAGACATACTGCGTTCATTCCCAGTCTAAG
837 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
12031780 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGTTTACGGTAGCACATACTAGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGGC
* *
12031845 TCGGGCATGTGATGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGTAGCATCGTCGGAGAA
66 TCGGGCATGTGATGGTGCCGCATTTTTCTTCGCCGGGG-ACCA----C-T--CATCG-CGGAGAA
* * * ** *
12031910 GCTGACTGGCGGCATTGGGGTTCCGATTATCGGAGGGGCCAAAGGAGGGGTGTGCGCACATGATG
122 CCTGACCGGCAGCATTGGGGTTCCGACGATCGGAGGGGCC---GGGGGGGTGTGCGCACATGATG
* *
12031975 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTC
184 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
12032040 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCTTTAAAGTGTCTGAA
249 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
* *
12032105 ATGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTCGAGTTTTTAGTTGAACTTTTT
314 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
** *
12032170 TGTGCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGCCCAAAACTCCTTTCGAAA
378 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAA
* *
12032235 AAATTTTAAAAAATTTCGAACCGTAAAAAGTTTCAGAAATCGTGAAAAATAGAAAACGAGTCGTC
443 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
12032300 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATG-ATATTGCAAGCCATAAAAATG
508 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT-TTACAAGCCATAAAAATG
* *
12032364 GGATTGGCACATAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTT
572 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
12032429 GCGCATCCCATCTCTCTAGCCGGCATAGTGCCTGCCCGCCCGCCCACTCATTTCGTTGGTTGGCT
637 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCT
* * * ** * *
12032494 TAGGCATACGGAGTTCATTCTCAGTCTAAGATTGGATGGATCGAGGGTTGTAGCAGCAAGATCGG
702 TAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACAGATCGAGGGTTGTGGTAGCAAGATCGG
* * ** * *
12032559 TAGCACGCAGAGGGGGACCCGGCCGATCCCCT-GCTTGTGCATCTC-GCCCCTCTAACCGGTTGA
767 CAGCACGCAGAGGGGGACCCGACCGAT-CCCTGGCTTACGCATC-CAGCCCCTCTAGCCGGCTGA
* * *
12032622 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCACAGTCTAAG
830 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
12032682 CATACGGAGTTCATTCCCAGTCTATGATCAGACCGAACTGAGGGTTGCGGCAGCACATGCTAGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGGC
* * * * *
12032747 TCGGGCATGTGTTGGTGCCGCATTTTTCTTTGTCGTGG--CAC-CATCGTCGGAGAACCTGTCCG
66 TCGGGCATGTGATGGTGCCGCATTTTTCTTCGCCGGGGACCACTCATCG-CGGAGAACCTGACCG
* * * * * *
12032809 ACAGCATTAGGGTTTCGACGATCGGAGGGGCCGGGGGGGTGTACGCACATGATGGGTGATAGGTG
130 GCAGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTG
* ** *
12032874 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTGCACCCCTTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
12032939 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGTCACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACT
*
12033004 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
*
12033069 ATAAAA
389 ACAAAA
12033075 GTGCCTAACC
Statistics
Matches: 2740, Mismatches: 290, Indels: 101
0.88 0.09 0.03
Matches are distributed among these distances:
884 44 0.02
885 52 0.02
886 1 0.00
888 456 0.17
889 266 0.10
890 267 0.10
891 295 0.11
892 77 0.03
893 202 0.07
894 209 0.08
895 73 0.03
896 3 0.00
899 3 0.00
901 2 0.00
902 212 0.08
903 59 0.02
904 33 0.01
905 4 0.00
906 2 0.00
907 474 0.17
908 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGGC
TCGGGCATGTGATGGTGCCGCATTTTTCTTCGCCGGGGACCACTCATCGCGGAGAACCTGACCGG
CAGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAC
AAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAATCTAAGATCGGACAGATCGAGGGTTGTGGTAGCAAGATCGGCAGCACGCAGAGGG
GGACCCGACCGATCCCTGGCTTACGCATCCAGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:12033369 original size:26 final size:26
Alignment explanation
Indices: 12033340--12033392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12033330 GTTGAATTAG
*
12033340 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAATCTAA
* *
12033366 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCACAATCTAA
12033392 G
1 G
12033393 ATCGCACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAATCTAA
Found at i:12033745 original size:695 final size:685
Alignment explanation
Indices: 12032390--12033769 Score: 1946
Period size: 685 Copynumber: 2.0 Consensus size: 685
12032380 ATATGAAGAT
* *
12032390 GTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCGGCAT
1 GTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTAGCCGGCAC
** * * * *
12032455 AGTGCCTGCCCGCCCGCCCACTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTC
66 AGTGCCCACCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATC
* * * ** *
12032520 TAAGATTGGATGGATCGAGGGTTGTAGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGGCCGA
131 TAAGATCGGATGGATCGAGGGTTGCAACAGCAAGATCGACAGCACGCAGAGGGGGACCCAGCCGA
* * * *
12032585 TCCCCTGCTTGTGCATCTCGCCCCTCTAACCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGA
196 TCCCCGGCTTGTGCATCCCGCCCCTCTAACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGA
* * * *
12032650 CTTAGGCAGACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCAGAC
261 ATTAGGCAGACAGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
* *
12032715 CGAACTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGT
326 CGAACTGAGGGTTCCGGCAGCACATGCTAGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTTGT
** *
12032780 CGTGGCACCATCGTCGGAGAACCTGTCCGACAGCATTAGGGTTTCGACGATCGGAGGGGCCGGGG
391 CGTGGCACCATCGTCGGAGAACCTAACCGACAGCATTAGGGTTCCGACGATCGGAGGGGCCGGGG
*
12032845 GGGTGTACGCACATGATGGGTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
456 GGGTGTACGCACATGATGGGTGATAGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTC
* * ** *
12032910 ATCAAACCTTGAGAACTTGCACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
521 ATCAAAACTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTA
*
12032975 GCCATTAAAGTGTCTGAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
586 GCCATTAAAGTGTCTGAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACCTTGAG
*
12033040 TTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAA
651 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
12033075 GTGCCT-AACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTTTCTGGCCGGCGC
1 GTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTAGCCGGCAC
* **
12033139 AGTGCCCACCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATC
66 AGTGCCCACCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATC
* *
12033204 TAAGATCGGATCGGATTGAGGGTTGCAACAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCG
131 TAAGATCGGAT-GGATCGAGGGTTGCAACAGCAAGATCGACAGCACGCAGAGGGGGACCCAGCCG
* ** * * *
12033269 ATCCCCGGTTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCTGCATGCTCGTTTCGTGGGTTG
195 ATCCCCGGCTTGTGCATCCCGCCCCTCTAACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTG
*
12033334 AATTAGGCATACAGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC-GC
260 AATTAGGCAGACAGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAG-
* * * * *
12033398 ACTGGA-TCGAGGGTTCCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGTCGTATTTTTCTT
324 ACCGAACT-GAGGGTTCCGGCAGCACATGCTAGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTT
* * * * * *
12033462 CGCTGGGGCACCATCGTCGG-AGCATCGTCGGAGAACCTAACTGGCGGCCTTGGGGTTCCGACGA
388 ---T---G-----TCGT-GGCACCATCGTCGGAGAACCTAACCGACAGCATTAGGGTTCCGACGA
** * *
12033526 TCGGAGGGGCC-GGGGGGTGTTTGCACATGATGTGTGATGGGTGCTGGTACATGGCCCTTATATT
441 TCGGAGGGGCCGGGGGGGTGTACGCACATGATGGGTGATAGGTGCTGGTACATGGCCCTTATATT
12033590 GGCCCCCTATCCCTCATCAAAACTCGAGAACTCACATCCCC-TTAAAGAGCATTTGAGATTTTAC
506 GGCCCCCTATCCCTCATCAAAACTCGAGAACTCACA-CCCCTTTAAAGAGCATTTGAGATTTTAC
*
12033654 AGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGAT-ACTTTTTTCAAATGGTCATAAA
570 AGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG-TCACTTTTTTCAAATGGTCACAAA
12033718 ATCTTGTACACCTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
634 ATCTTGTACACCTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
12033770 ATACAAGGAT
Statistics
Matches: 610, Mismatches: 68, Indels: 24
0.87 0.10 0.03
Matches are distributed among these distances:
684 119 0.20
685 219 0.36
688 1 0.00
691 1 0.00
695 213 0.35
696 55 0.09
697 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.27
Consensus pattern (685 bp):
GTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTAGCCGGCAC
AGTGCCCACCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATC
TAAGATCGGATGGATCGAGGGTTGCAACAGCAAGATCGACAGCACGCAGAGGGGGACCCAGCCGA
TCCCCGGCTTGTGCATCCCGCCCCTCTAACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGA
ATTAGGCAGACAGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
CGAACTGAGGGTTCCGGCAGCACATGCTAGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTTGT
CGTGGCACCATCGTCGGAGAACCTAACCGACAGCATTAGGGTTCCGACGATCGGAGGGGCCGGGG
GGGTGTACGCACATGATGGGTGATAGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAAACTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTA
GCCATTAAAGTGTCTGAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACCTTGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
Found at i:12034893 original size:24 final size:25
Alignment explanation
Indices: 12034843--12034893 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
12034833 GTTGACTTAG
* *
12034843 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACG-AGTTCATTCCCAATCTAA
12034869 GCATACG-GTTCATTCCCAATCTAA
1 GCATACGAGTTCATTCCCAATCTAA
12034893 G
1 G
12034894 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
26 7 0.30
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAATCTAA
Found at i:12035917 original size:26 final size:26
Alignment explanation
Indices: 12035888--12035940 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12035878 CCGGTTCGAT
12035888 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12035914 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12035940 C
1 C
12035941 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:12037318 original size:26 final size:26
Alignment explanation
Indices: 12037278--12037345 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
12037268 GTCCGATCCA
* *
12037278 AATGAACTCCATATGCTTAGACTGGG
1 AATGAACTCCGTATGCTTAGACAGGG
12037304 AATGAACTCCGTATGCTTAGACAGGG
1 AATGAACTCCGTATGCTTAGACAGGG
12037330 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
12037346 CTAAGTCAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (26 bp):
AATGAACTCCGTATGCTTAGACAGGG
Found at i:12038234 original size:26 final size:26
Alignment explanation
Indices: 12038183--12038235 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12038173 CTGGTGCGAT
*
12038183 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12038209 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12038235 C
1 C
12038236 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12038555 original size:865 final size:868
Alignment explanation
Indices: 12036991--12040097 Score: 3442
Period size: 877 Copynumber: 3.5 Consensus size: 868
12036981 AGATTTCGGG
*
12036991 CACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*** *
12037056 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAACATCCAAGTACCAGCACCCATCGCACATCAT
66 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* * * * * * *
12037121 GTGCGCACACCCCCCCGACCCCCCGATCGTC-GAAACCCTAACGCTGCCGGTTAGGTTCTCCGGC
131 GTGCGCACA-CCCCCCGGCCCCCCGATCGTCAG-AACCCCAATGCCGCCGATCAGGTTCTCTGGC
* * ** ** * * *
12037185 GATGCTCTGGCGATGGTGCCCAGGCGAAGAAAAATACGGCACCAGCGCATGCCCAAGCCAAGCAT
194 GATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCAT
* * *
12037250 GTGCTGTCGCAACCCTTGGTCCGATCCAAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
259 -TGCTGTCGCAACCC----T-CG-T-C----G--GTGC-GAT-CTTAGACTGGGAATGAACT-C-
*
12037315 TATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
306 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCT
* * * * * *
12037380 CAACCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGT-CT-TGC
370 CAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTATGTGCTAT-C
* * * *
12037443 ATATCCTGCTGCCGCAACCCTCAGCCTGGTCCAATCTTAGACTGGGAATGAACTCCGTACGCCTA
434 -GATCCTGCTACCACAA-CCTCA--C---T----TC-TAGA-T---AATG---TCC-TAAGCC-A
* * ** * * *
12037508 A--G-CCAACCGA-CGAAACGAGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGGCGAGATGCGC
478 ACCGACGAAACGAGCG-GGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* *
12037569 AAGCCGTGGATCGAT-GGTTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCAAATGC
542 AAGCCGTGGATCGATAGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* *
12037633 CACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAG
606 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * * *
12037698 ACAACTCGGTTTTTATTTTTCACGATTTCTGAAACTTTTTACGGATCGAGATTTTTTAAAATTTT
671 ATGACTC-GTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* *
12037763 TTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGAGGTGATCCTTGTATTTTTTTTGGCATGCACAA
735 TTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* * * * *
12037828 AACAATTGAGCTAAAAACTCAAGGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCTATT
800 AAAAATTCAGCTAAAAACTCAA-GTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
12037893 TCCGA
864 TCAGA
*
12037898 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
12037963 TCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAATTACCAGCACCCATCACACATCAT
66 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* * * *
12038027 GTGCGCACACCCCCC-GCCCCCCGATTGTCAGAACCCAAATGCCGTCGGTCAGGTTCTCTGGCGA
131 GTGCGCACACCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGA
*
12038091 TGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCTAGCATTG
196 TGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATTG
*
12038156 CTGTTG-AAGCCCTCGGTCTGGTGCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGG
261 CTGTCGCAA-CCCTC-GTC-GGTGCGATCTTAGACTGGGAATGAACTC--TATGCTTAGACTGGG
12038220 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCTGGCCAGAGGG
321 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CGCTCAGCTGGCCAGAGGG
* ** **
12038285 GCGGGATGCGCAAGCCGGGGATCGATCAGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGTAA
385 GCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTATGTGCTATCGATCCTGCTACCACAA
* * * *
12038350 -C-C-C-TC-AG-T-ATG-CCTAAGCCAATCGATGAAACGAGCGGGCGGGTGGGCGGGCGGGCAC
450 CCTCACTTCTAGATAATGTCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGTGGGCAC
* * * *
12038407 TAC-TCCAGCCAGAGAGACGGGATGCACAAGCCGTGAATCGATAAGGTGTTA-GTGGGTTTAGGC
515 TACGT-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT-AGGTGGTAGGTGGGTTTAGGC
* *
12038470 ACATTTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
578 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
12038535 AAGCCATCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACTATTTTTGAAACTT
643 AAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT-TATTTTTCACGATTTTTGAAACTT
* * * * *
12038600 TTTACGGTTCGGGATTTTTTAAAATATTTTCGAAAGCAGTTTTTGCCCCAAACTTAGTAGACGTG
707 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTG
* * *
12038665 ATCCTTGTATTTTTTTTTGGCAGGCACAAAAAAATTCAGCTAAAAATTCGAAGTCTACAACATTT
772 ATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAGTCTACAAGATTT
12038730 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
835 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
12038764 CACTTTAAAGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
12038829 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCAT
66 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* * * * *
12038894 GGGTGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTT-TTTCGA
131 GTGCGCACACCCCC-CGG-CCCCCCGATCGTCAGAACCCCAATGCCGCCGATCAGGTTCTCT-GG
* * ** * ** *
12038958 CGATACTCCGGTGATGGTGCAGCGGTGAAGAAAAATACGG-ACCAGCACATGCCCGAGCCCAGCA
193 CGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCA
*
12039022 TTTGCTGTCGCAA-CC-C-TC---G-G-TC-----C----AAT----TCGAT-CTTAGACTGGGA
258 -TTGCTGTCGCAACCCTCGTCGGTGCGATCTTAGACTGGGAATGAACTCTATGCTTAGACTGGGA
* *
12039065 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGCTGGCTAGAGGGG
322 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCTGGCCAGAGGGG
* * * * *
12039130 CGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTATCGATCCTACTACCACAAC
386 CGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTATGTGCTATCGATCCTGCTACCACAA-
12039195 CCTCAGTCTGGTTTGATCTTAGACTAGGAATGAACTTCATATTCCTAAGCCAACCGACGAAACGA
450 CCTCA--C-----T--TC-TAGA-T---AATG----------TCCTAAGCCAACCGACGAAACGA
* * * *
12039260 GCGGGCTGGCGAGCGGGTGGGCACTACGTCGGCCAAAGAGACGGGATACGCAAGCCGTGGATCGA
491 GCGGGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
12039325 TAGGGTGGTAGGTTGGTTTAGGCAAATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
556 TA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
* * *
12039390 GTAAATTCATACATTGG-CCACTTAAGCCTTTACGTGAAGTTTCATGGCAAGATGACTCATTTTT
620 GTAAATTCATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC-GTTTT
* *** *
12039454 TATTTTTCATGATTTTTGAAACTTTTTGTAGTTCGGGATTTTTT-AAATTTTTTCCGGTAGGAGT
683 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-CGGAAGGAGT
*
12039518 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAACATTCAGC
747 TTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA-ATTCAGC
* *
12039582 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCTA-A
811 TAAAAACTC-AAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGA
12039641 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* **
12039706 TCGATGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCAT
66 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* * ** *
12039771 GTGCGCACACGCCCCCCGGCACCCCGATCG-CCGAAACCCCAATGCTACCGATCAGGTTCTCCGG
131 GTGCGCACA--CCCCCCGGCCCCCCGATCGTCAG-AACCCCAATGCCGCCGATCAGGTTCTCTGG
* * * * * *
12039835 TGATGCTCCGACGATTGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGTA
193 CGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCA
* *
12039900 TGTGCTGTCGTAACCCTCGATCCGGTCCGAT-TTGAGACTGGGAATGAACTCCGTATGCTTAGAC
258 T-TGCTGTCGCAACCCTCG-T-CGGTGCGATCTT-AGACTGGGAATGAACT-C-TATGCTTAGAC
* * *
12039964 TGGGAATGAACT-CGTATGCTTAAGTCAACCCAC-ATAACGACCGTGCGGGCGCTCAGCCGGCCA
317 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGC-GGCGCTCAGCTGGCCA
* * * *
12040027 GA-GGGCGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCTCTCTGTGTGCTATCGATCCTGCTGC
380 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTATGTGCTATCGATCCTGCTAC
12040091 CACAACC
445 CACAACC
12040098 CTCGATCCGG
Statistics
Matches: 1889, Mismatches: 211, Indels: 206
0.82 0.09 0.09
Matches are distributed among these distances:
844 126 0.07
845 4 0.00
846 1 0.00
847 3 0.00
850 1 0.00
851 3 0.00
855 1 0.00
858 2 0.00
860 4 0.00
861 1 0.00
862 4 0.00
863 5 0.00
864 9 0.00
865 246 0.13
866 168 0.09
867 58 0.03
868 5 0.00
869 27 0.01
870 76 0.04
871 2 0.00
872 1 0.00
874 2 0.00
876 11 0.01
877 359 0.19
878 216 0.11
879 11 0.01
880 1 0.00
882 1 0.00
883 1 0.00
884 1 0.00
887 2 0.00
888 2 0.00
889 3 0.00
890 144 0.08
891 5 0.00
892 2 0.00
893 1 0.00
894 2 0.00
897 4 0.00
898 2 0.00
899 2 0.00
901 3 0.00
902 62 0.03
903 57 0.03
904 111 0.06
905 7 0.00
906 48 0.03
907 82 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (868 bp):
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
GTGCGCACACCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCCGCCGATCAGGTTCTCTGGCGA
TGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATTG
CTGTCGCAACCCTCGTCGGTGCGATCTTAGACTGGGAATGAACTCTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTCAGCTGGCCAGAGGGGCGGGA
TGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTATGTGCTATCGATCCTGCTACCACAACCTCAC
TTCTAGATAATGTCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTACGTC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGATGACTCGTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTT
CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAGTCTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGA
Found at i:12039985 original size:25 final size:26
Alignment explanation
Indices: 12039934--12039985 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12039924 GTCCGATTTG
12039934 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
12039960 AGACTGGGAATGAACT-CGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
12039985 A
1 A
12039986 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:12040249 original size:159 final size:157
Alignment explanation
Indices: 12039957--12040310 Score: 485
Period size: 159 Copynumber: 2.2 Consensus size: 157
12039947 ACTCCGTATG
*
12039957 CTTAGACTGGGAATGAACTCGTATGCTTAAGTCAACCCACATAACGACCGTGCGGGCGCTCAGCC
1 CTTAGACTGGGAATGAACTCGTATGCTTAAGTCAACCCACATAACGACCATGCGGGCGCTCAGCC
* * * *
12040022 GGCCAGAGGGCGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCTCTCTGTGTGCTATCGATCCTG
66 GGCCAGAGGGCAGAATGCGCAAGCCGGGGATCGGCCAGGTCCCTCTCTGTGTGCTACCCATCCTG
*
12040087 CTGCCACAACCCTCGATCCGGTCTGAT
131 CTGCCACAACCCTCGATCCGGTCTAAT
* * * *
12040114 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCACGA-AACGAGCATGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACT-CGTATGCTTAAGTCAACCCAC-ATAACGACCATGCGGGCGCTCAG
* * *
12040178 CCGGCCAGAGGGGCAGAATGCGCCAGCCGGGGATCGGTCGGGTCCCTCTCTGTGTGCTACCCATC
64 CCGGCCAGA-GGGCAGAATGCGCAAGCCGGGGATCGGCCAGGTCCCTCTCTGTGTGCTACCCATC
* * * **
12040243 CTGCTGCCGCAACCTTCGGTTTGGTCTAAT
128 CTGCTGCCACAACCCTCGATCCGGTCTAAT
* *
12040273 CTTAGACTGGGAATGAAATTCGTATGCTTAAGCCAACC
1 CTTAGACTGGGAATG-AACTCGTATGCTTAAGTCAACC
12040311 GACGAAATGA
Statistics
Matches: 171, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
157 19 0.11
158 46 0.27
159 103 0.60
160 3 0.02
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCGTATGCTTAAGTCAACCCACATAACGACCATGCGGGCGCTCAGCC
GGCCAGAGGGCAGAATGCGCAAGCCGGGGATCGGCCAGGTCCCTCTCTGTGTGCTACCCATCCTG
CTGCCACAACCCTCGATCCGGTCTAAT
Found at i:12043236 original size:874 final size:874
Alignment explanation
Indices: 12040085--12045158 Score: 6079
Period size: 874 Copynumber: 5.7 Consensus size: 874
12040075 CTATCGATCC
*
12040085 TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAG
1 TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
12040150 CCCACGAAACGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGCAGAATGCGCCAGCCGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGG
* * * * * * * *
12040215 TCGGGTCCCTCTCTGTGTGCTACCCATCCTGCTGCCGCAACCTTCGGTTTGGTCTAATCTTAGAC
130 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGAC
* * * * ** *
12040280 TGGGAATGAAATTCGTATGCTTAAGCCAACCGACGAAATGAA-CGGGCGGGTGGGCGGCCGGGCA
195 TGGGAATGAACTCCGTATGCCTAAGCCAACCGA-TAAAACAAGCGGGCGGGTGGGCGGGCGGGCA
* * * * * *
12040344 CCACGCCGGCCAGAGAGATGGTATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGT
259 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
12040409 ACATCTTCATATTTCTACATGTCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTT
324 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTC
* * *
12040474 AAGCCTTCACGCGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATAATTTTTGAAACTT
389 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTT
** * * * *
12040539 TTTGTGGTTCAAGATTTTTAAAAATTTTTTCGGAAGCATTTTTGGCCCCAAACTTGGTAGACGTG
454 TTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
12040604 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGTTAAAAACTCGAAGTGAACAAGATTTT
519 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
12040669 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAA
584 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
12040734 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATAT
649 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
12040799 AAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCCCGCCTTCCCGATTGT
714 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCAC-CC--CCCGATCGT
* * * ** *
12040864 C-GAAACCCTAATGCCGTCGGTCCGATTCTCCGGCAATGCTCCGGTGATGGTGCCCCAACGAAGA
775 CAG-AACCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGA
* * * *
12040928 AAAATGCTGCACCAGCACATGCCC-AACCTAGCATG
839 AAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* * * * **
12040963 TGCTGACATAACCCTTGGTCCGGTCTGATCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * * *
12041028 CCAACGAAATGAGCGTGCGGGTGCTCTGCCGGTCGGAGGGGCAAGATGCGCAAGCCGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGG
** * * ** * * ** ** *
12041093 CCATGTCCCCCTCTGCATTCTGTTGATCCTGCTGCTGCAACCCTCGATCCAGTCTGATCTTAGAA
130 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGAC
* *
12041158 TGGGAATGAACTCCGTATGCCTAAGCCAACCGAT--GA-AA-CGAGCGGGTGGGCGGGCGGGCAC
195 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAACAAGCGGGCGGGTGGGCGGGCGGGCAC
*
12041219 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTTA-GTGGGTTTAGGC
260 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGG-TAGGTGGGTTTAGGC
***
12041283 ACATCTTCATATTTCTGGGTGCCAATGCCATTTTTATGG-C--T---TT-A-A-AATGGTCCCTC
324 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTC
* *
12041339 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAAATTTTGAAACTT
389 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTT
* * * * *
12041404 TTTACAGTTCGAGATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGCAAACATG
454 TTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * * *
12041469 ATCCTTATATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAAATCGAAGTGAACAAGATTTT
519 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
12041534 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
584 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
12041599 AATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATAT
649 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * * *
12041664 AAGGCCCAAGTACCATCACCCATCGCACCTCATGTGCGCACACCCCCCCCGCCTTCCCCTGATTG
714 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA--CCCCCCACC--CCCC-GATCG
* * * * * *
12041729 TCGGAACCCCAATGCCGCCGGTCCGATTCT-CGGTAATGTTCCGACGATGGTGCCCCGACGAAGA
774 TCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGA
* *
12041793 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
839 AAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* * * * ** *
12041829 TGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACCAGGAATAAACTCCGTATGCCTAAGTCAA
1 TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * * * *
12041894 CCCACGAAACGAGCGTGCGGGTGCTCTGCCGGTCGGAGGGGCAGGATGCGTAATCCGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGG
* *** * *
12041959 TC-GGTCCCCCTCTGCGTGCTATTGATCCTGCTGCCGCAACCCTTGGTCCGGTCCAATCTTAGAC
130 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGAC
* * * *
12042023 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGTGGGCGGGCAGGCAC
195 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAACAAGCGGGCGGGTGGGCGGGCGGGCAC
* *
12042088 TACGTCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
260 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* ** *
12042153 CATCTTCATACTTCTAGGTGCCAATGCCATTTTTGTGG-CTGTAAATTCATACAATGGTCCCTCA
325 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTCA
* * *
12042217 AGCCTTCACATGGAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAATCTTT
390 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTT
* *
12042282 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGTCCCAAACTTGGTAGACGTGA
455 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
12042347 TCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
520 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
12042412 TGACCATTTGAAAAAAGTGTCCCCATTTCACACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
585 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
12042477 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGAGCCAATATA
650 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
12042542 AGAGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCCCCCACCCCCCGATCGTTAGAA
715 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCACCCCCCGATCGTCAGAA
* * ** ** *
12042607 CCCCAATACCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGGAAAATG
780 CCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * * *
12042672 CGGCACCATCACATTCTCGAGCCCAACATG
845 CGGCACCAACACATGCCCGAGCCCAGCATG
*
12042702 TGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * ** *
12042767 CCCACGAAACGAGCGTGCAGGCGCTTAACAGGCCAGAGGGGCGGCATGCGCAAGTTGGGGATCGA
66 CCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGG-ATGCGCAAGCCGGGGATCGG
* * * * * * * *
12042832 CCGGGTCCCCTTCTACGTGCTGCCAATCCTACTGCCACAACCATCGGTCTGGTCCGATCTTATAC
130 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGAC
* * * *
12042897 TGGGAATGAACTCCGTGTGCCTAAGCCAACTGACAAAACAAGCGGGCGGGTGGACGGGCGGGCAC
195 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAACAAGCGGGCGGGTGGGCGGGCGGGCAC
* * *
12042962 TACGCCAGCCAGAGAGA-TGGATGCGCAAGCCATGGATCGATAGGGTGATAGGTGGGTTTAGGCA
260 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
** *
12043026 CATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTA
325 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTCA
**
12043091 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTT
390 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTT
* * * * * *
12043156 TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCTAAACTTGGTAGACATGG
455 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
12043221 TCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
520 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
12043286 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
585 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
12043351 ATCTCAAATACTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
650 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
12043416 AGGGCCAAGTACCAGCACCCATCGCACATCA--TGTGCACA-----CA-CCCCCGATCGTCAGAA
715 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCACCCCCCGATCGTCAGAA
* * * * *
12043473 TCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCT---TC---GGT--------GAAGAAAAATA
780 CCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* *
12043524 CGGAACCAACACATGCCCGTGCCCAGCATG
845 CGGCACCAACACATGCCCGAGCCCAGCATG
* *
12043554 TGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAATATGCTTAGACTGGGAATG
1 TGCTGCCACAACCC----T-CGATCCG------G--T----CTG---AT-CTTAGACTGGGAATG
* * * * * **
12043619 AACTCCGTATGCATAAGTCAACCAATGAAACGAGCGTGTGGGTGCTCAACCGGCTAGAGGGATAG
45 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGG-GCG
* * * * * * * *
12043684 GTTACGCAAG-CTGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTACTGTCGCAACCCT
109 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA-CC-
*
12043748 CAGTTCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
172 C---TCG----G----T---CT--G---G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTAT
* * * *
12043813 GCCTAAGCCAACCGAT--GA-AA-CGAGCGGGAGGGCGGGCGGGCACTACACCGGCCAGAGAGAC
213 GCCTAAGCCAACCGATAAAACAAGCGGGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
* * *
12043874 GGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
278 GGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
* *
12043939 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
343 TGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTT
* ** ** * * *
12044004 CATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTCCGAAACTTTTTACGGTTAGGGATTTTG
408 CATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTT
* * * *
12044069 TAAAATATTTTCGGCAA-GAGTTTTGACCCCAAACTTGGTAGACGCGATCCTTGTACTTTTGTTG
473 TAAAATTTTTTCGG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
12044133 GCATGCACACAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
537 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
12044198 TGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
602 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
12044263 AGGGGGGGTGAGTTCTCAAGGTTTGATGTGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCA
667 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
12044328 CCCATCGCACATCATGTATGCACACCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCATCGG
732 CCCATCGCACATCATGTGTGCACACCCCCC--ACCCCCCGATCGTCAGAACCCCAATGCCGTCGG
** * * *
12044393 TCAGGTTCTCTAGCGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGTGGCACCAACACATG
795 TCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG
* *
12044458 CCCTAGCCCAACATG
860 CCCGAGCCCAGCATG
*
12044473 TGCTGCCGCAACCCTCGATCCGGTTTCGATCTTAGACTGGAAATGAATTCCGTATGCTTAGACTG
1 TGCTGCCACAACCCTCGATCC-G----G----T---C-----------T--G-AT-CTTAGACTG
* *
12044538 GGAATGAACTCCATATGACTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAG
39 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAG
* * * * *
12044603 GGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGTTGTCGATCCTGCTGCCAC
104 GGGC-GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* ** * * * *
12044668 AACCCTTGGTCTGACCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGATGAAG
168 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAA
* * * * *
12044733 CGAGCGGGCGGGCAGGCAAGCGAGCGGGCACTACGCTGGCTAGAGAGACGGGATGCGCAAGCCAT
233 CAAGCGGGCGGG-TGG---GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCAT
* * ** *
12044798 GGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGATAATGCAATTTTT
294 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* * *
12044863 ATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCCCGTGAAGTTTCATGGCAAGAGGACTC
359 ATGGCCTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** * * *
12044928 GTTTCCTATTTTCCATGATTTTTGAAACTTTTTACGGTTGGGGATTTTTTAAAATTCTTTCGGAA
424 GTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
** *
12044993 GGAGTTTTGTTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCACAAAAAAATT
489 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
12045058 CAACTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACA
554 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
12045123 CTTTAATGGCTACTGGCAGCCAACCTGTAAAATCTC
619 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
12045159 GAAGTGTACA
Statistics
Matches: 3655, Mismatches: 416, Indels: 220
0.85 0.10 0.05
Matches are distributed among these distances:
852 47 0.01
856 1 0.00
857 7 0.00
860 3 0.00
863 2 0.00
865 493 0.13
866 213 0.06
867 6 0.00
868 5 0.00
869 119 0.03
871 2 0.00
872 82 0.02
873 326 0.09
874 593 0.16
875 11 0.00
876 1 0.00
877 351 0.10
878 190 0.05
881 1 0.00
885 1 0.00
888 2 0.00
890 1 0.00
893 1 0.00
894 35 0.01
895 432 0.12
896 6 0.00
897 9 0.00
898 37 0.01
900 39 0.01
901 2 0.00
902 3 0.00
903 1 0.00
904 7 0.00
905 51 0.01
907 2 0.00
908 374 0.10
910 2 0.00
911 3 0.00
913 4 0.00
914 8 0.00
915 3 0.00
917 1 0.00
919 49 0.01
921 2 0.00
924 1 0.00
925 85 0.02
926 40 0.01
927 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (874 bp):
TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGATGCGCAAGCCGGGGATCGGC
CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAACAAGCGGGCGGGTGGGCGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTCAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTT
TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCACCCCCCGATCGTCAGAAC
CCCAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
GGCACCAACACATGCCCGAGCCCAGCATG
Found at i:12043800 original size:26 final size:26
Alignment explanation
Indices: 12043762--12043814 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12043752 TCGATCTGAT
12043762 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12043788 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12043814 C
1 C
12043815 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12044543 original size:26 final size:26
Alignment explanation
Indices: 12044503--12044554 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12044493 CGGTTTCGAT
* *
12044503 CTTAGACTGGAAATGAATTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
*
12044529 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
12044555 ACTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:12045211 original size:88 final size:88
Alignment explanation
Indices: 12045062--12045246 Score: 334
Period size: 88 Copynumber: 2.1 Consensus size: 88
12045052 AAAATTCAAC
* *
12045062 TAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTT
1 TAAAATCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTT
*
12045127 AATGGCTACTGGCAGCCAACCTG
66 AATGGCTACTGGCAGCAAACCTG
*
12045150 TAAAATCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
1 TAAAATCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTT
12045215 AATGGCTACTGGCAGCAAACCTG
66 AATGGCTACTGGCAGCAAACCTG
12045238 TAAAATCTC
1 TAAAATCTC
12045247 AAATGCTCTT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 93 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (88 bp):
TAAAATCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTG
Found at i:12045564 original size:26 final size:26
Alignment explanation
Indices: 12045487--12045566 Score: 133
Period size: 26 Copynumber: 3.1 Consensus size: 26
12045477 GGTTTGATCT
*
12045487 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTTCGTATGCC
*
12045513 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTTCGTATGCC
*
12045539 TAGATTGGGAATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTTCGTATGCC
12045565 TA
1 TA
12045567 AGTCAACCCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCC
Found at i:12047861 original size:25 final size:25
Alignment explanation
Indices: 12047827--12047883 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
12047817 TCTGATCTTA
*
12047827 GACTAGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
12047852 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
12047877 GA-TGGGA
1 GACTGGGA
12047884 TGCACAAGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 5 0.16
25 26 0.84
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:12048869 original size:26 final size:26
Alignment explanation
Indices: 12048840--12048890 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12048830 GATTCGATCT
* * *
12048840 TAGACTGGGAATTAACTTCGTATGCA
1 TAGACTGGCAATGAACTCCGTATGCA
12048866 TAGACTGGCAATGAACTCCGTATGC
1 TAGACTGGCAATGAACTCCGTATGC
12048891 CTAAGACAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGGCAATGAACTCCGTATGCA
Found at i:12049737 original size:26 final size:26
Alignment explanation
Indices: 12049708--12049760 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12049698 CCGGTCTGAT
12049708 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12049734 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12049760 C
1 C
12049761 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12050488 original size:26 final size:26
Alignment explanation
Indices: 12050459--12050511 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12050449 CTGGTCCGAT
12050459 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12050485 CTTAGACTGGTAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12050511 C
1 C
12050512 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12051393 original size:26 final size:26
Alignment explanation
Indices: 12051342--12051394 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12051332 CCGGTCTGAT
**
12051342 CTTAGACGGGGAATCAACTCCGTATG
1 CTTAGACGGGGAATCAACTCAATATG
* *
12051368 CTTAGACTGGGAATGAACTCAATATG
1 CTTAGACGGGGAATCAACTCAATATG
12051394 C
1 C
12051395 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATCAACTCAATATG
Found at i:12053411 original size:893 final size:889
Alignment explanation
Indices: 12049895--12054037 Score: 5594
Period size: 895 Copynumber: 4.7 Consensus size: 889
12049885 GGTCTTATCG
* * *
12049895 TGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTCAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
12049960 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGATTCGGGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
* * * *
12050025 TAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGATGGGATCCTTGTATTTTTGTTGG
131 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
12050090 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACATGATTTTGTGACCATTTGAAAAAAGT
196 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * *
12050155 GTCCCCATATAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAGCTTAAATGCTCTTTAA
261 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
12050220 GTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCAC
326 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * *
12050285 CCATCGGACATCATGTGTGCACACCCCCCGGACCCCTCCGATCGCCGGAACCCCAATGCCGCCGG
391 CCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGG
* * * ** * *
12050350 TCAGGTTCTTCGGCGACGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATTTGGCACTAACACATA
456 TCAGG-TC-TC--CG--TCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATG
*
12050415 CCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
515 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
* * *
12050480 GTATGCTTAGACTGGTAATGAACT-TCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTG
580 GTATGCGTAGACTGG-AATGAACTCT-GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTG
* * * * * *
12050544 CTCAGCCGGCCCGAGGGGTGGGATGCACAAGCCGAGGATCAGCTGGGTCCCCCTCTATGTGCTGT
643 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGTGTGCTGT
* * * *
12050609 TGATCCTACTGCCATAACCCTCGGTCCT-TTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
708 CGATCCTGCTGCCACAACCCTC-GTCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
12050673 AAGCCAACTC-ACGAAACAAGCGGGTGGGCGGGCATTACGTCGGCCAGAGAGACGGGATGA-GCA
772 AAGCCAAC-CGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT-ACGCA
* *
12050736 AGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
835 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
*
12050791 TGCCAATGCCATTTTTATGGCTTGTAAATTGATACTATGGTCCCTTAAGCCTTCACGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* **
12050856 CATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGAAGTTCGAGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
* * * *
12050921 TAAAATTTTTTCGGAAGGAGTTTTAGCTCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTAG
131 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
12050986 CATGCTCAAAAATATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
196 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
12051051 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
261 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
12051116 -GGGGTGTGAGTTCTC-AGGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCA
326 GGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
12051179 CCCATCGCACATGATGTGCGCACA-CCCCCCGACCCCCCCGATCG-CAGGAAACCCAATGCCGCC
390 CCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTC-GGAACCCCAATGCCGTC
* * * * *
12051242 GGTCAGG--T---TCTCCGGAGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCTCG
454 GGTCAGGTCTCCGTCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCCG
* * * * *
12051302 AGCCCAGCAAGTGCTGCCGCAACCCTTC-GTCCGGTCTGATCTTAGACGGGGAATCAACTCCGTA
519 AGCCCAGCATGTGCTGCCGCAACCC-TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* ** * *
12051366 TGCTTAGACTGGGAATGAACTCAATATGCCTAAGTCAACCCATGAAATGAGCGTACGGGTGCTCA
583 TGCGTAGACT-GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCA
* * * * * *
12051431 ACCGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCACGTGT--TGCCGA
647 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTC-TGTGTGCTGTCGA
* * * *
12051494 TCCTGCTGCCGCAACCCTCGAT-CTGGTCTGATCTTAGACTGGAAATGAACTCCATATGCCTAAT
711 TCCTGCTGCCACAACCCTCG-TCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
12051558 CCAACCGACGAAATGAGCGGGCAGGCAGGAGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGC
775 CCAACCGACGAAACGAGC--G--GGC----GGGCGGGCACTACGTCGGCCAGAGAGACGGGATAC
* *
12051623 GCAAGCCATGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
832 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
12051681 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * ** * *
12051746 CATGGCAAGACGACCCGTTTTCTGTTTTTTAGGATTTTTGAAACTGTATGCGGTTCGAGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
* * * * *
12051811 TAAATTTTTTTCGGAAGGAGTTTTGACCCCAAACTTTGGTAGACATGATACTTGTATTTATGTTG
131 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTG
*
12051876 GCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
195 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
12051941 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGGAAAATCTCAAATGCTCTTTA
260 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
12052006 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCA
325 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* ** * *
12052071 CCCATCGCACATCATGTGCGCACA-CCCCCTGA-CCCCCCGAATTATCGAAACCTCAATGCCGTC
390 CCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCG-ATCGTCGGAACCCCAATGCCGTC
* *
12052134 GGTCAGGCTCTCCGT-T-----GA---TGCTCCGGTGAAGAAAAATACGGCACCAACACATGCCC
454 GGTCAGG-TCTCCGTCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCC
** * * * *
12052190 GAGCCCAGCATGTGCTGTTGAAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAAATCCATA
518 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
12052255 TGCGTAGACTGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAATGAGCGGGCGTGTGCTCAG
583 TGCGTAGACTGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * * * *
12052320 CCGGCCAAAGGGGCGGGATGTGCAAGTCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCAATC
648 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGTGTGCTGTCGATC
* *
12052385 TTGCTACCACAACCCTCTGTCC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
713 CTGCTGCCACAACCCTC-GTCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
12052449 AACCGGCAAAACGAGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGTCGTG
777 AACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCATG
*
12052514 GATCGATA-GG-GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
842 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
*
12052560 TGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAATCCTTCACGTGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
12052625 CATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTCTGCGGTTCGGGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
* * * *
12052690 TAAAATTTTTTGGGAAAGAGTCTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
131 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
12052755 CATGCTCAAAAAAATTCAGCTAAAAACTCGCAGTGTACAAGATTTTGTTACCATTTGAAAAAAGT
196 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
12052820 GTCCCCATTTCAGACACTTTAATGGCTATTGGCAGTAAACCTGTAAAATCTCAAATGCTTTTTAA
261 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
12052885 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCAC
326 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
12052950 CCATAGCACACCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAACGTCGTGGG
391 CCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGG
*
12053015 TCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCGACACATG
456 TCAGG-TC-TC--CG-T-CTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATG
* * *
12053080 CCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGA-TTGGAATGAACTCC
515 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
* *
12053144 GTATGCGTAGACTGGCAATGAACTCTGTATACCTAAGTCAACCCACGAAATGAGCGTGTGGGTGC
580 GTATGCGTAGACTGG-AATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGC
* * * * *
12053209 TCAGTCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCCT-GGTCCCACTTTGTGTGCTAT
644 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-CTGGGTCCCCCTCTGTGTGCTGT
* * * *
12053273 CGATCCTGCTGTCGCAACCCTCAG-CCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
708 CGATCCTGCTGCCACAACCCTC-GTCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* *
12053337 AAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTACGTCGGCGAGAGAGACGGGATACGCAAG
772 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAG
*
12053402 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCA
837 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
*
12053455 TGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * * ** * *
12053520 CTTGGCAAGATGACTCATTTTTTATTTTTCACGATTTTTGAATCTTTTTACGGTTCGAGATTTTT
66 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
* * * *
12053585 TAAAATTTTTTCGTAAGGA-TTTCTGGTCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTC
131 TAAAATTTTTTCGGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * *
12053649 GCATGCACCAAACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
195 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
12053714 TGTCCCCATTTTAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
260 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* ** *
12053779 AGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTATCAGCA
325 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * * *
12053844 CCCATCGCACATCATATGCGTACACCCTCCCCTCGACCCACCCGATTGTCGGAACCCAAATGTCA
390 CCCATCGCACATCATGTGCGCACA-CC-CCCC-CGACCCCCCCGATCGTCGGAACCCCAATGCCG
* * * * **
12053909 TCAGCCAGG--T---TCTCCGGCAATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCC
452 TCGGTCAGGTCTCCGTCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCC
* * * * * *
12053969 CAAGCCCGGCATCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCAT
517 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
12054034 ATGC
582 ATGC
12054038 CTAAGCCAAC
Statistics
Matches: 2866, Mismatches: 321, Indels: 128
0.86 0.10 0.04
Matches are distributed among these distances:
878 233 0.08
879 212 0.07
880 11 0.00
881 52 0.02
882 72 0.03
883 198 0.07
884 8 0.00
885 4 0.00
886 2 0.00
887 89 0.03
888 111 0.04
889 167 0.06
890 236 0.08
891 158 0.06
892 141 0.05
893 297 0.10
894 49 0.02
895 484 0.17
896 303 0.11
897 5 0.00
898 34 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
TGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTT
TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGG
TCAGGTCTCCGTCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCCGAG
CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
GTAGACTGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGTGTGCTGTCGATCCTG
CTGCCACAACCCTCGTCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCATGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
Found at i:12054270 original size:711 final size:703
Alignment explanation
Indices: 12053278--12054636 Score: 2071
Period size: 711 Copynumber: 1.9 Consensus size: 703
12053268 GCTATCGATC
* * *
12053278 CTGCTGTCGCAACCCTCAGCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 CTGCTGCCGCAACCCTCAGCCTGATCCGATCTTACACTGGGAATGAACTCCATATGCCTAAGCCA
* * * * * *
12053343 ACCGATGAAACGAGCGGGCGGGCGGGCACTACGTCGGCGAGAGAGACGGGATACGCAAGCCATGG
66 ACCGACGAAACGAGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACAGGATACGCAAGCCATGG
12053408 ATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
** * *
12053473 GGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCTTGGCAAGATGACTCAT
196 GGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCAT
* * * * *
12053538 TTTTTATTTTTCACGATTTTTGAATCTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGTAAG
261 TTTCTATTTTTCAAGATTTTTGAAACTGTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAG
* * *
12053602 GA-TTTCTGGTCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACCAAACAATT
325 GAGTTT-TGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATT
* *
12053666 CAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACA
* *
12053731 CTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTC
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGCGAGTTCTC
*
12053796 GAGGTTTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATAT
519 GAGGTTTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATAT
* * * * *
12053861 GCGTACACCCTCCC-CTCGACCCACC-CGATTGTCGGAACCCAAATGTCATCAGCCAGGTTCTCC
584 GCGCACACCCTCCCAC-CGACCC-CCACGATCGACGGAACCCAAATGCCACCAGCCAGGTTCTCC
12053924 GGCAATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCAAGCCCGGCAT
647 GGCAATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCAAGCCCGGCAT
* *
12053981 CTGCTGCCGCAACCCTCGGTCC-GGTCCGATCTTACACTGGGAATGAACTCCATATGCCTAAGCC
1 CTGCTGCCGCAACCCTCAG-CCTGATCCGATCTTACACTGGGAATGAACTCCATATGCCTAAGCC
* *
12054045 AACTGACGAAACGAGCGGGTGGGTAGGCGGGCAGGCACTACGCCGACCAGAGAGACAGGATGCGC
65 AACCGACGAAACGAGC------G--GGCGGGCAGGCACTACGCCGACCAGAGAGACAGGATACGC
* *
12054110 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
122 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGC
**
12054175 CATTTTTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
187 CATTTTTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
* *
12054240 ACGACTCATTTTCTATTTTTCAAGATTTTTGAAACTGTTTGCGGTTCAGGATTTTTTAAATTTTT
252 ACGACTCATTTTCTATTTTTCAAGATTTTTGAAACTGTTTACGGTTCAGGATTTTTTAAAATTTT
* * * *
12054305 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
317 TTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAA
*
12054370 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATT
382 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
12054435 TAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCG
447 TAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGCG
** *
12054500 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCAC
512 AGTTCTCGAGGTTTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
12054565 ATCATGTGCGCAGACCCTCCCACCGACCCCCACGATCGACGGAACCCCAATGCCACCGGTCAGGT
577 ATCATATGCGCACACCCTCCCACCGACCCCCACGATCGACGGAACCCAAATGCCACCAGCCAGGT
12054630 TCTCCGG
642 TCTCCGG
12054637 TGATGCTCCG
Statistics
Matches: 588, Mismatches: 55, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
703 70 0.12
704 2 0.00
709 1 0.00
710 2 0.00
711 508 0.86
712 5 0.01
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (703 bp):
CTGCTGCCGCAACCCTCAGCCTGATCCGATCTTACACTGGGAATGAACTCCATATGCCTAAGCCA
ACCGACGAAACGAGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACAGGATACGCAAGCCATGG
ATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCAT
TTTCTATTTTTCAAGATTTTTGAAACTGTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGCGAGTTCTCGA
GGTTTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGC
GCACACCCTCCCACCGACCCCCACGATCGACGGAACCCAAATGCCACCAGCCAGGTTCTCCGGCA
ATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCAAGCCCGGCAT
Found at i:12054748 original size:26 final size:26
Alignment explanation
Indices: 12054712--12054767 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12054702 GTGCTACCGC
*
12054712 ATGCTTAGACTGGGACTGAACTCCGT
1 ATGCTTAGACTGGGAATGAACTCCGT
12054738 ATGCTTAGACTGGGAATGAACTCCGT
1 ATGCTTAGACTGGGAATGAACTCCGT
12054764 ATGC
1 ATGC
12054768 CTAAGTCAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
ATGCTTAGACTGGGAATGAACTCCGT
Found at i:12055647 original size:26 final size:26
Alignment explanation
Indices: 12055618--12055668 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12055608 CCGGTCCGAT
12055618 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
12055644 CTTAGATTGGGAATGAACTTCGTAT
1 CTTAAACTGGGAATGAACTCCGTAT
12055669 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:12057395 original size:26 final size:26
Alignment explanation
Indices: 12057366--12057418 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12057356 CCAGTCCGAT
12057366 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
12057392 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12057418 C
1 C
12057419 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12057788 original size:889 final size:892
Alignment explanation
Indices: 12053987--12060547 Score: 7847
Period size: 889 Copynumber: 7.4 Consensus size: 892
12053977 GCATCTGCTG
* ** * *
12053987 CCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCA-TATGCCTAAGCCAACTGA
1 CCGCAACCCTCGGTTCGGTCTAATCTTAGACTGGGAATGAACT-CAGTATGCCTAAGCCAACCGA
* ** * * * *
12054051 CGAAACGAGCGGGTGGGTAGGCGGGCAGGCACTACGCCGACCAGAGAGACAGGATGCGCAAGCCG
65 CGAAACGAGCGGGCGGGCGGGC-GGCGGGC-CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
*
12054116 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
128 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
12054181 TATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
193 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * * * *
12054246 CATTTTCTATTTTTCAAGATTTTTGAAACTGTTTGCGGTTCAGGATTTTTTAAATTTTTTTTGGA
258 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAA
*
12054311 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
323 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
12054376 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTAAGAC
388 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
12054441 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCT
453 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
12054506 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATG
518 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
12054571 TGCGCAGACCCTCCCACCGACCCCCACGATCGACGGAACCCCAATGCCACCGGTCAGGTTCTCCG
583 TGCGCACA-CC-CCC-CCGGCCCCC-CAATCGCCGGAACCCCAATG---CC-GCCAGG--CTCAG
** * * **
12054636 GTGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATACGGCACCAATACATG-CCGAGCCCAGC
638 GT--T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
12054700 A--TG-TGCT---A--C-C-G--C-AT--G--CTTAGACTGGGACTGAACTCCGTATGCTTAGAC
700 ATGTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTATGCTTAGAC
* * ** * *
12054748 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGCGCGTATGGGTGCTCAGCCGGCCAG
765 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAG
* * * * *
12054813 AGGGGTGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTA
830 AGGGGCGGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTA
* * * * * * * * * *
12054876 CCACAACCCTCAGTCCAGTTTGATCTTAGATTGGGAATAAACTTC-GTATGCCTGAGCCAATCGA
1 CCGCAACCCTCGGTTCGGTCTAATCTTAGACTGGGAATGAAC-TCAGTATGCCTAAGCCAACCGA
* * * *
12054940 CGAAACGAGCGTGCAGGCGAGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCG
65 CGAAACGAGCGGGCGGGCGGGC-GGCGGGC-CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
*
12055005 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTT
128 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* * *
12055070 TATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACAACT
193 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * *
12055135 CGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-AG
258 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGA-
* * * *
12055199 AAGGAGTTTTGGCCCTAAACTTGGTAGGCCTGATCCTTGTATTTTTGTTGGCATGCAC-AAGAAA
322 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
12055263 TTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCTATTTCAGA
387 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
12055328 CACTTTAATGGCTACAGGCAACAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTC
452 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * * *
12055393 TCTAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGTCAAGTACCAGCACCTATCCCGCATCAT
517 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * * *
12055458 GTGCGTACACCCCGCCGACCCTCCCGATCACCGAAATCCTAATGCCGTCGGTCAGGTTCTCCAAC
582 GTGCGCACACCCCCCCGGCCC-CCCAATCGCCGGAACCCCAATGCCG-C---CAGG--CT-C-A-
* * * * * * * *
12055523 GATGCTCTGACGATGGTGCTCCGGCAAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCAT
637 GGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
12055588 GTGCTG-TCACAACCCTCGGTCCGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGATT
702 GTGCTGCT-GCAACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACT
* * * * **
12055652 GGGAATGAACTTCGTATTCCTAAGTCAACCCACGGAACGAGCGTGCGGGTGCTCAACCGGCCAGA
766 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA
* * * * * *
12055717 GGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTACCCCTCTGCGTGCTGTCAATCCTACTG
831 GGGGCGGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTA
* * * * * **
12055779 CCACAACCCTCAG-TCTGGTCTGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCTGACCGA
1 CCGCAACCCTCGGTTC-GGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGA
* * *
12055843 CG-AA--A-CGGGCGGGC--G-GGC---ACTATGTCGGCCAAAGAGACGGGATGCGCAAGCCGTG
65 CGAAACGAGCGGGCGGGCGGGCGGCGGGCCTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
12055898 GATCGATAGTGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
* * *
12055963 TGACTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGATGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
12056028 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTTG-AA
260 TTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGAAA
* * * * * * *
12056092 GAAGTTTTGGACCCAAACATGTTAGACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATG
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
12056157 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCCTTTTAGACA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
12056222 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
12056287 GAGGTTTGATGAGGGGTAGGGGGCCAATATAGGGGCCAAGTACCAGCATCCGTCGCACATCATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * * * *
12056352 --GCACA-CCCCCCGGCCCCCTGGATCGTCGGAACCCTAATGTCGCCGGTCAGGTTCTCCGGTGA
584 GCGCACACCCCCCCGGCCCCC-CAATCGCCGGAACCCCAA--T-GCC-GCCAGG--CTCAGGT--
* * ** * * * *
12056414 TGCTCCGGCAATGGTGCCCCGGTGAAGAAAAATGTGACACCAGCAGATGCCCGAG-CTAGCATGT
640 T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
12056478 GCTG-TCGTAACCCT---T--G----G-TC-----C--GG--T---CT--G-AT-CTTAGACTGG
704 GCTGCT-GCAACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTGG
* *
12056516 GAATGAAC-CTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAG
768 GAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAG
* * * * * * *
12056580 GGGCGGGATGCGCAAGCCGGGGATCGTTCGGGTCCCCCTCTGTGTGCTATCGACCCTACTT
832 GGGCGGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTA
* * * *
12056641 CCACAACCCTCAG-TCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
1 CCGCAACCCTCGGTTC-GGTCT-AATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCG
* * * *
12056704 ACGAAATGAGCGGGAGGGCGGGCAGGC---ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
64 ACGAAACGAGCGGGCGGGCGGGC-GGCGGGCCTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
12056766 TGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTCCATGCCAATGCCATTTT
128 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* * *
12056831 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGACAACT
193 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** *
12056896 CGTTTTCTATTTTTCATAATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
258 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAA
* ** * * * *
12056961 AGGATTTTTGGTGCCAAA-GTGGTAGATGTGATCGTTGTATTTTTTTTGGCATGCACAAAAAAAT
323 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
12057025 TCAGCTAAAAACTCAAAATGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGAC
388 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
12057090 ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCT
453 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
12057154 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATG
518 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
** * * * * *
12057219 TGCGCACACCCCCCCAACCCCCCGATCGTCGAAACCCCATTGCCACCA-G-TCAGGTTCTCCGAC
583 TGCGCACACCCCCCCGGCCCCCCAATCGCCGGAACCCCAATGCCGCCAGGCTCAGGTTCTCCGAC
* * *
12057282 GATGGTACCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATCTGCTGCTGCA
648 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCA
** *
12057347 ATGCTCGGTCC-AGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
713 ACCCTCGGTCCGA-TCCGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * ** * *
12057411 CTGTATGCCTAAGTCAACCCAAGAAACGAGCGTACGGGCGCTCAG-CAACCAGAGAGGCGGGATC
777 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATG
* *
12057475 CACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCAATCCTACTA
842 CACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTA
* * *
12057526 CCGCAACCCTCGGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACTGAC
1 CCGCAACCCTCGGTTCGGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGAC
* *
12057591 GAAACGAGCTGGCGGGCGGGCGCGCGGGCCTTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGT
66 GAAACGAGCGGGCGGGCGGGCG-GCGGGCC-TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
12057656 GGATCGTTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTT
129 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* * * * *
12057721 TTGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGGGAAGTTTCACGGCAAGATGACTC
194 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
12057786 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCGAAA
259 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA
* *
12057851 GTAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
12057915 CAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
12057980 CTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTA-GGGGTGTGAGTTCTC
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
12058044 GAGGTTTGATAAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* ** * *
12058108 GCGCAAACCCCCCCGGCCCCCCCAATCATC-GAACTCCAATGCTGTCGGTCAGGTTCTTC-GGTG
584 GCGCACACCCCCCCGG-CCCCCCAATCGCCGGAACCCCAATGC---C-GCCAGG--C-TCAGGT-
* * ** * * *
12058171 ATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGTGGCACCAAAACTTGCTCGAGCCCAACATG
640 -T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* *
12058236 TGCTGCTGTAACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCTGTATGCTTAGACTGG
703 TGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTGG
* * * *
12058301 GAATGAAATCCGTATTCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGTCGGCCAAAGG
768 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGG
* *
12058366 GGCGGGATGCACAAGCTGGGGATC-GTCCGGGTCCCCCTCTGCATGCTGTCGATCCTACTG
833 GGCGGGATGCACAAGCTGGGGATCGGT-CGGGTCCCCCTCTGCGTGCTGTCGATCCTACTA
* * * * *
12058426 CCCCAACCCTCGG-TCTGCTCTGATCTTAGA-TGGGGAATGAACTCTGTTTGCCTAAGCCAACCG
1 CCGCAACCCTCGGTTC-GGTCTAATCTTAGACT-GGGAATGAACTCAGTATGCCTAAGCCAACCG
* * * *
12058489 ACGAAACGAGCGGGCGGGCGGGCTGGTGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAACCC
64 ACGAAACGAGCGGGCGGGCGGGC-GGCGGGC-CTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * *
12058554 GCGGATCGATAGGGTGGTAGGTTGGTTTAAGCACATCTTCATATTTCTATACGCCAATGCCATTT
127 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
** *
12058619 TTATCACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGAC
192 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
12058684 TCGTTTTCTATTTTTCACGATTTTTGAATCTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGA
257 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGA
*
12058749 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACA
322 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
12058814 TTCAGCTAAAAACTCGAAGTGTACAACATTTTGCGACCATTCGAAAAAAGTGCCCCCATTTCAGA
387 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
12058879 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAATTGCTCTTGAAGGGGGTGTGAGTTC
452 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
12058944 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
517 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * * *
12059009 GTGCGCACACCCCCCCGGCCCCCTTGATCGCCGGAACCCTAATGCTGCCGATCAGGTTCTCCGGC
582 GTGCGCACACCCCCCCGGCCCCC-CAATCGCCGGAACCCCAA---TGCCG-CCAGG--CT-CAG-
* * * ** *
12059074 GATGCTACGGCGATGGTGCCCCGGTGAAG-AAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
638 G-TTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
** * * *
12059138 GTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACACCGTATGCTTAGACTG
702 GTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
12059203 GGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGATCAGTCGGCCAAAG
767 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAG
* * * * * ** * **
12059268 GGGCGGGACGCACAAGCCGAGGATCGG-CAGAGTCCCCCTGTGCGTGCTACCGATCCTGCCG
832 GGGCGGGATGCACAAGCTGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGTCGATCCTACTA
* * * * * *
12059329 CCGTAACCCTCAGTCCGGTCCAATCTTAGACAGGGAATGAACTCAGTATGCCTAAGCCAACCGAT
1 CCGCAACCCTCGGTTCGGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGAC
*
12059394 GAAACGAGCGGGCGGGC--G-GGCGGGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
66 GAAACGAGCGGGCGGGCGGGCGGCGGGC-CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
12059456 GATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
* *
12059521 TGGATTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
12059586 TTTTCTATTTTTCATGATTTTTTAAACTTTTTGCGGTTCGGGATTTTTCAAAATTTTTTTGGAAG
260 TTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
* *
12059651 GAGTTTTAGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTC
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
12059716 AGCTAAAAACTCGAAGTGTACAAGATATTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
390 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
12059781 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTCAGTTCTCG
455 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
12059846 AGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACTAGCACGCATCGTACATCATGTG
520 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
12059911 CGCACACCACCCTCGGCCTCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGCTCTCCGGCGAT
585 CGCACACC-CCCCCGGCCCCCCAATCGCCGGAACCCCAATGCCG-C---CAGG--CT-CAG-G-T
* * * *
12059976 GCTCCGACGATGGTG-CCCTAGCGGAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA--T
640 TCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
12060038 G-TGCT---A---TC-GT---AACC---C-TA-AGTTCG---G---TCC-AAT-CTTAGACTGGG
704 GCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTGGG
* * **
12060079 AATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTCAACCGGCCAGAGGG
769 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGG
* * * *
12060144 GTGGGATGCACAAGCTGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTA
834 GCGGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTA
** * * * * **
12060203 TTGCAACCCTCGATTTGGTCCAATCTTAGACTGGGTATGAACTCAGTATGCCTAAGCCAATTGAC
1 CCGCAACCCTCGGTTCGGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGAC
* * *
12060268 GAAACGAGTGGACGGGC--G-GACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
66 GAAACGAGCGGGCGGGCGGGCGGCGGGC-CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*** *
12060330 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCTAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
* *
12060395 TGGATTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
12060460 TTTTCTATTTTTCACAATTTTAAAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
260 TTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
12060525 GAGTTTTGGCCCCAAACTTGGTA
325 GAGTTTTGGCCCCAAACTTGGTA
12060548 ATAAACTCCA
Statistics
Matches: 4951, Mismatches: 582, Indels: 293
0.85 0.10 0.05
Matches are distributed among these distances:
859 44 0.01
860 17 0.00
861 2 0.00
862 185 0.04
863 5 0.00
864 1 0.00
865 2 0.00
866 12 0.00
867 3 0.00
868 76 0.02
869 157 0.03
870 241 0.05
871 13 0.00
873 1 0.00
874 429 0.09
875 4 0.00
876 2 0.00
877 2 0.00
878 2 0.00
879 3 0.00
881 1 0.00
882 7 0.00
883 3 0.00
884 3 0.00
885 205 0.04
886 79 0.02
887 6 0.00
888 293 0.06
889 818 0.17
890 7 0.00
891 257 0.05
892 195 0.04
893 2 0.00
894 2 0.00
895 4 0.00
896 9 0.00
897 6 0.00
898 7 0.00
899 683 0.14
900 396 0.08
901 159 0.03
902 43 0.01
903 520 0.11
904 39 0.01
905 1 0.00
906 1 0.00
907 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CCGCAACCCTCGGTTCGGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGAC
GAAACGAGCGGGCGGGCGGGCGGCGGGCCTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGGCCCCCCAATCGCCGGAACCCCAATGCCGCCAGGCTCAGGTTCTCCGACGAT
GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACC
CTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACA
AGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTA
Found at i:12058315 original size:26 final size:25
Alignment explanation
Indices: 12058258--12058315 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
12058248 CCTCGGTCCG
*
12058258 ATCCG-ATCTTAGACTTGGAATGAA
1 ATCCGTATCTTAGACTGGGAATGAA
* *
12058282 CTCTGTATGCTTAGACTGGGAATGAA
1 ATCCGTAT-CTTAGACTGGGAATGAA
12058308 ATCCGTAT
1 ATCCGTAT
12058316 TCCTAAGTCA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 3 0.11
25 2 0.07
26 22 0.81
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (25 bp):
ATCCGTATCTTAGACTGGGAATGAA
Found at i:12058689 original size:900 final size:897
Alignment explanation
Indices: 12056506--12060547 Score: 5400
Period size: 899 Copynumber: 4.5 Consensus size: 897
12056496 CCGGTCTGAT
*
12056506 CTTAGACTGGGAATGAAC-CTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
12056570 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTTCGGGTCCCCCTCTGTGTGCTATCGACC
65 CCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * *
12056635 CTACTTCCACAACCCTCAGTCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTACTACCGCAACCCTCGGTCTGGTCT-AATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCC
* * * *
12056699 AACCGACGAAATGAGCGGGAGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
193 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * *
12056764 CGTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTCCATGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * * *
12056829 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGACAA
323 TTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** *
12056894 CTCGTTTTCTATTTTTCATAATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
388 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* ** * * * *
12056959 AAAGGATTTTTGGTGCCAAA-GTGGTAGATGTGATCGTTGTATTTTTTTTGGCATGCACAAAAAA
453 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
12057023 ATTCAGCTAAAAACTCAAAATGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
12057088 ACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
12057152 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** * * * * * * *
12057217 TGTGCGCACACCCCCCC-AACCCCCCGATCGTCGAAACCCCAT--TG-CCACCA-G---T-CAG-
713 TGTGCGCACACCCCCCCGGCCCCCCCAATCGCCGGAACCCAATGCTGTCGATCAGGTTCTCCGGC
* * *
12057272 G-TTCTCCGACGATGGTACCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCAT
778 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* ** *
12057336 CTGCTGCTGCAATGCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATG
843 GTGCTGCTGCAACCCTCGGTCCA-TCCGATCTTAGACTTGGAATGAACTCCGTATG
* * *
12057392 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTACGGGCGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
12057456 CAACCAGAGAGGCGGGATCCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCTGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* *
12057521 TACTACCGCAACCCTCGGT-TCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCA
130 TACTACCGCAACCCTCGGTCT-GGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCA
* *
12057585 ACTGACGAAACGAGCTGGCGGGCGGGCGCGCGGGC-CTTACGTCGGCCAGAGAGACGGGATGCGC
194 ACCGACGAAACGA----GCGGGCGGGCGGGCGGGCAC-TACGTCGGCCAGAGAGACGGGATGCGC
* * *
12057649 AAGTCGTGGATCGTTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * * * *
12057714 CATTTTTTTGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGGGAAGTTTCACGGCAAG
319 CATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
12057779 ATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGATTCGGGATTTTTTAAAATTTT
384 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
*
12057844 TTCGAAAGTAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
449 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
12057908 AAGAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
12057973 TCAGATACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTA-GGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
12058037 AGTTCTCGAGGTTTGATAAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** *
12058101 ATCATGTGCGCAAACCCCCCCGGCCCCCCCAATCATC-GAACTCCAATGCTGTCGGTCAGGTTCT
709 ATCATGTGCGCACACCCCCCCGGCCCCCCCAATCGCCGGAAC-CCAATGCTGTCGATCAGGTTCT
* * * * ** * *
12058165 TCGGTGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGTGGCACCAAAACTTGCTCGAGCCC
773 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
12058230 AACATGTGCTGCTGTAACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCTGTATG
838 AGCATGTGCTGCTGCAACCCTCGGTCC-ATCCGATCTTAGACTTGGAATGAACTCCGTATG
* * * *
12058291 CTTAGACTGGGAATGAAATCCGTATTCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
12058356 CGGCCAAAGGGGCGGGATGCACAAGCTGGGGATCGTCCGGGTCCCCCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGT-CGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
12058421 TACTGCCCCAACCCTCGGTCTGCTCTGATCTTAGA-TGGGGAATGAACTCTGTTTGCCTAAGCCA
130 TACTACCGCAACCCTCGGTCTGGTCTAATCTTAGACT-GGGAATGAACTCAGTATGCCTAAGCCA
* *
12058485 ACCGACGAAACGAGCGGGCGGGCGGGCTGGTGGGCACTACGCCGGCCAGAGAGACGGGATGTGCA
194 ACCGACGAAACGAGCGGGCGGGCGGGC----GGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * * * *
12058550 ACCCGCGGATCGATAGGGTGGTAGGTTGGTTTAAGCACATCTTCATATTTCTATACGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
12058615 ATTTTTATCACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGA
320 ATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
12058680 CGACTCGTTTTCTATTTTTCACGATTTTTGAATCTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
385 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
12058745 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
450 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
12058810 AACATTCAGCTAAAAACTCGAAGTGTACAACATTTTGCGACCATTCGAAAAAAGTGCCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
12058875 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAATTGCTCTTGAAGGGGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
12058940 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*** *
12059005 TCATGTGCGCACACCCCCCCGGCCCCCTTGATCGCCGGAACCCTAATGCTGCCGATCAGGTTCTC
710 TCATGTGCGCACACCCCCCCGGCCCCCCCAATCGCCGGAACCC-AATGCTGTCGATCAGGTTCTC
* * ** *
12059070 CGGCGATGCTACGGCGATGGTGCCCCGGTGAAG-AAAATGTGGCACCAGCACATGCCCGAGCCCA
774 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
** * * *
12059134 GCATGTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACACCGTATG
839 GCATGTGCTGCTGCAACCCTCGGTCC-ATCCGATCTTAGACTTGGAATGAACTCCGTATG
* * * * * *
12059194 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGATCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * **
12059259 CGGCCAAAGGGGCGGGACGCACAAGCCGAGGATCGGCAGAGTCCCCCTGTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * * * * *
12059324 TGCCGCCGTAACCCTCAGTCCGGTCCAATCTTAGACAGGGAATGAACTCAGTATGCCTAAGCCAA
130 TACTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAA
* *
12059389 CCGATGAAACGAGCGGGCGGGCGGGCGGGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
195 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
12059454 TGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTACGTGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
12059519 TATGGA-TTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
325 TAT-GACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
12059583 TCGTTTTCTATTTTTCATGATTTTTTAAACTTTTTGCGGTTCGGGATTTTTCAAAATTTTTTTGG
389 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGA
* *
12059648 AAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
12059713 TTCAGCTAAAAACTCGAAGTGTACAAGATATTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
12059778 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTCAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
12059843 TCGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACTAGCACGCATCGTACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
12059908 GTGCGCACACCACCCTCGG-CCTCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGCTCTCCGG
714 GTGCGCACACC-CCCCCGGCCCCCCCAATCGCCGGAA-CCCAATGCTGTCGATCAGGTTCTCCGG
* * *
12059972 CGATGCTCCGACGATGGTG-CCCTAGCGGAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
777 CGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
12060036 A--TG-TGCT---A---TC-GT--AACC---C-TA-AGTTCG---G---TCC-AAT-
841 ATGTGCTGCTGCAACCCTCGGTCCATCCGATCTTAGACTTGGAATGAACTCCGTATG
* * *
12060068 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
12060133 CGGCCAGAGGGGTGGGATGCACAAGCTGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * * * *
12060198 TGCTATTGCAACCCTCGATTTGGTCCAATCTTAGACTGGGTATGAACTCAGTATGCCTAAGCCAA
130 TACTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAA
** * * *
12060263 TTGACGAAACGAGTGGACGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
195 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
*** *
12060328 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCTAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
12060393 TATGGA-TTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
325 TAT-GACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
12060457 TCGTTTTCTATTTTTCACAATTTTAAAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
389 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGA
12060522 AAGGAGTTTTGGCCCCAAACTTGGTA
454 AAGGAGTTTTGGCCCCAAACTTGGTA
12060548 ATAAACTCCA
Statistics
Matches: 2793, Mismatches: 318, Indels: 102
0.87 0.10 0.03
Matches are distributed among these distances:
874 429 0.15
875 3 0.00
876 2 0.00
879 1 0.00
882 3 0.00
883 2 0.00
884 2 0.00
885 118 0.04
886 60 0.02
887 4 0.00
888 67 0.02
889 428 0.15
890 2 0.00
891 4 0.00
892 3 0.00
893 1 0.00
894 1 0.00
896 14 0.01
897 5 0.00
898 6 0.00
899 679 0.24
900 382 0.14
901 157 0.06
902 33 0.01
903 338 0.12
904 49 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGTCGGGTCCCCCTCTGCGTGCTGTCGATCCT
ACTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
ATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCGGCCCCCCCAATCGCCGGAACCCAATGCTGTCGATCAGGTTCTCCGGCGAT
GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCTGCAACCCTCGGTCCATCCGATCTTAGACTTGGAATGAACTCCGTATG
Found at i:12059204 original size:26 final size:26
Alignment explanation
Indices: 12059168--12059220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12059158 CCGATCCAAT
*
12059168 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAAAGAACACCGTATG
*
12059194 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACACCGTATG
12059220 C
1 C
12059221 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACACCGTATG
Found at i:12061467 original size:26 final size:26
Alignment explanation
Indices: 12061429--12061481 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12061419 CCTATCTGAT
*
12061429 CTTAGACTGGGAATCAACTCCATATG
1 CTTAGACTAGGAATCAACTCCATATG
* * *
12061455 CTTATACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCATATG
12061481 C
1 C
12061482 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCATATG
Found at i:12062359 original size:26 final size:26
Alignment explanation
Indices: 12062323--12062401 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
12062313 CCAGTTCGAT
12062323 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12062349 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12062375 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12062401 C
1 C
12062402 CTAAGTTAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12062900 original size:924 final size:920
Alignment explanation
Indices: 12061451--12065898 Score: 5037
Period size: 889 Copynumber: 4.9 Consensus size: 920
12061441 ATCAACTCCA
* * * * * *
12061451 TATGCTTATACTAGGAATGAACTCCGTATGCCTAAGTTAACACACGAAACAAGCGTGCAGGCGTT
1 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** * * * ** *** *
12061516 CAGCTAGCCAGAGGGGTGGGATGCATAAACCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCA
66 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
* * * *
12061581 ATCCTACTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTAGAAATGAACTCCGTATGCCTAAG
131 ATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* * *
12061646 CCAACTGACG--A-AA-TGAGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCAACCGACGAAACAAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * ** *
12061707 GCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATAGTTCTGTGTTCCAATGCCA
261 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
12061772 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
12061837 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA--TTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * *
12061900 TGCAGAAGGATTTTTTGCCCCAAACATGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAA
456 TG-A-AAGG-TGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * *
12061965 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACTATTTGACAAAAGTGTCCCTATT
518 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
12062030 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCG
*
12062095 AGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGG-CAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
12062159 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
713 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
12062224 TCGGTGATGCTCCGGCGATGGTG-CCGGACGAACAAAAATACAGCACCAGCACATGCTCGAGCCC
778 TCGATGATGCTCCGGCGATGGTGCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
12062288 AGCATGTGCTGCCACAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
843 AGCATGTGCTGCCGCAACCCTCGGTCC-GGTCGATCTTAGACTGGGAATGAACT-CGTATGCTTA
12062353 GACTGGGAATGAACTTCG
906 GACTGGGAATG-AC--CG
* * *
12062371 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTTAATCCACGAAACGAGCGTGTGGGCGCT
1 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
12062436 CAGCCGACCAGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCTCTCTACATGCTGCCA
66 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
* * * * *
12062501 ATCCTACTGCTGCAACCTTCGGTCCAGTCTAATCTTAGACTAGGAGTGAACTCCGTATGCCTAAG
131 ATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
*
12062566 CGAACCGACGAAACAAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCAACCGACGAAACAAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * * *
12062631 GCCATGGTTCGATCGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
261 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
12062696 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
12062761 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * * *
12062826 CGAAAGGTGTTTTGCCCCAAACTTGGTAGACATGATCCTTTTATTGTTGTTGGCATGCACAAAAA
456 TGAAAGGTGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
**
12062891 AAGTTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-CCCCATTTC
521 AA-TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
12062955 AGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAG
* *
12063020 TTCTCAAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
12063085 CATGTGTGAACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGTTTCTCC
715 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTC
* * * * *
12063149 GATGATGCTCCGACGATGTTGCCCTGACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAG
780 GATGATGCTCCGGCGATGGTGCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
*
12063214 CATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
845 CATGTGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACT-CGTATGCTTAGA
12063279 CTGGGAATGA---
908 CTGGGAATGACCG
* * **
12063289 -A--C-T---CT--G--T--A-----TA--CCTAAGTCAACCCACGAAATGAGCGTGTGGATGCT
1 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * ** * *
12063334 CAGCCGGCCAAAAGGGCGGGATGCGCAAGCCGAGGATCGATTGGGTCCCTTTCTGCGTGCTACCG
66 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
* * * *
12063399 ATCCTGCTGCTGTAACCCTCGGTCTGGTCCT-ATATTAGACTGGGAATGAACTCCGTATGCCTAA
131 ATCCTGCTGCTGCAACCCTCGGTCCGGT-CTGATCTTAGACTAGGAATGAACTCCGTATGCCTAA
* *
12063463 GCCAACCGACAAAACGAGTGAGC-AGGCGGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGAT
195 GCCAACCGACGAAAC-A---AGCGA-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
12063527 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
255 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
12063592 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
320 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
12063657 CAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
385 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA
* * * **** * * *
12063722 TTTTTTTGGATGGAGTTTTGGTAAACAACTTGGTGGACATGATCCTTGTATTTTTTTTGGCATGC
450 TTTTTTTGAAAGGTGTTTTGCCCCA-AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
12063787 ACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
514 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
12063852 CATTTCAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAG
579 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
12063917 TGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
644 TGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** * * * *
12063982 GCACATCATGTACATACACCCCCCCGGCCCCCCTGATCGTCGAAACCCCAATGCCGTCGATCAGG
709 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * *
12064047 TTC-TCCA--A--------CGATGGTGCACCGG-CAAAGAAAAATGCGGCACCAGAACATGCCCG
774 TTCTTCGATGATGCTCCGGCGATGGTGC-CCGGACGAAGAAAAATGCGGCACCAGCACATGCCCG
*
12064100 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACT--G---G-----G-A--
838 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCGTATG
12064152 -TT-GA---GG--T--CCG
902 CTTAGACTGGGAATGACCG
* * * *
12064162 TATGCTTACACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTT
1 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** ** * * *
12064227 CAGTTGGCCAGAACGGTGGGATGCGCAAGCCGGGGATCGGGCGGGTCCCCCTCTGCATGCTGCCG
66 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
* ** * *
12064292 ATCTTGCTGCCACAACCCTTGGTCCGGTCTGATCATAGACTAGGAATGAACTCCGTATGCCTAAG
131 ATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
** * * *
12064357 CCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
196 CCAACCGACGAAACAAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
12064422 GCCGTGGATCGATCGGGTGGTTGGTGGGTTTCGGCACATCTTCATATTTCTGCATGCCAATGCCA
261 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
**
12064487 TTTTTATATCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
12064552 GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
*
12064617 TGAAAGGAT-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCA-AAA
456 TGAAAGG-TGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
12064680 AAATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAA-ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
12064745 TCAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGCG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCG
*
12064810 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *** * * * * * *
12064875 ATCATATGTATACAACCCCCCCGGCCCCCCTGATCGCCAGAACCCCATTGCCACTGGTCAGGTTC
713 ATCATGTGCGCAC-ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* *
12064940 TTCGATGATGCTCCGGCGATGGTGCCTCGG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGT
777 TTCGATGATGCTCCGGCGATGGTGCC-CGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
12065004 ACAGCATGTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCC
841 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAAC-TCGTATGCT
**
12065069 TA-A---GTCA--ACC-
904 TAGACTGGGAATGACCG
* * * * * * * * ** * *
12065079 CATG---A-A--ACG-A-GCA-TGCG--GGCGT---TC-AGCC-GGCTA-GAG-GGGCGGGATGC
1 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-CGC
* * ** * * * * * * **
12065126 GCAAGCCGGGCA-TCGGTCGGG-T-C-C---CC----CTCTG-CATGCTACCGATC--C-TGCTG
65 TC-AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCATGCTG
* ** * * * ** * * * *
12065176 CCG-TAAC--C--CT-C-A-GTTCGGTCTGATCTTAGATTAGGAAT-GAACTCCGTA-TGCC-TA
128 CCGAT-CCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTA-GACTAGGAAT--GAACT-CCGTA
* * * ** * * * * *
12065230 AGCC-AACCGACGAAACGAGCG-GGCAGGCGAGTGTGCCGGCGAGCACTACG-CGGCCAGAGAGA
188 TGCCTAA--G-CCAACCGA-CGAAACAAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGA
* * * **
12065292 CGGGATGCGCAAGCCGTGTATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAT
249 CGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * *
12065357 GTGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTT
314 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
12065422 TCATGGCAAGACGACT--TTTTCTATTTTTCATGATTTTTGAAACTTTTTG-TGTTCGAGATTTT
379 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTT
* * *
12065484 TTAAAA-TTTTTTCAGAAGGAT-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTTT
444 TTAAAATTTTTTTGA-AAGG-TGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
12065547 TTGCATGCACAAAAAAATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAA
506 TGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
12065612 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAGTAAACCTGTAAAATCTCAAATGCTCT
571 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCT
* *
12065677 TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
635 TTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
12065742 GCACCCATCG-----CA------CAC-CCCCCTCAGCCCCCCCGATCGTCGAAACCCCAATGCCG
700 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * * *
12065795 CCGGTCAGGTTC-TCTGACGATGCTCAGGCGATGGTGCACCGG-TGAAGAAAAGTGCAGCACCAG
765 CCGGTCAGGTTCTTC-GATGATGCTCCGGCGATGGTGC-CCGGACGAAGAAAAATGCGGCACCAG
* ** *
12065858 CACATGCCCAAGCCCAGCATGTGCTGCTACAACCTTCGGTC
828 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
12065899 TGGTTCGAGG
Statistics
Matches: 3085, Mismatches: 345, Indels: 249
0.84 0.09 0.07
Matches are distributed among these distances:
866 2 0.00
867 117 0.04
868 1 0.00
869 2 0.00
872 1 0.00
874 3 0.00
875 2 0.00
876 1 0.00
877 3 0.00
878 9 0.00
879 151 0.05
880 153 0.05
881 11 0.00
882 153 0.05
883 26 0.01
884 3 0.00
885 1 0.00
886 2 0.00
887 8 0.00
888 8 0.00
889 473 0.15
890 54 0.02
891 6 0.00
892 2 0.00
893 229 0.07
894 5 0.00
897 1 0.00
898 149 0.05
899 10 0.00
900 12 0.00
901 93 0.03
902 297 0.10
903 190 0.06
904 43 0.01
905 1 0.00
906 4 0.00
907 1 0.00
908 3 0.00
909 3 0.00
910 1 0.00
911 3 0.00
912 1 0.00
913 2 0.00
914 2 0.00
915 1 0.00
916 3 0.00
917 4 0.00
918 2 0.00
920 179 0.06
922 1 0.00
923 235 0.08
924 412 0.13
925 1 0.00
926 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (920 bp):
TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
ATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACAAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
TGAAAGGTGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCG
ATGATGCTCCGGCGATGGTGCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTG
GGAATGACCG
Found at i:12063276 original size:26 final size:26
Alignment explanation
Indices: 12063247--12063297 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12063237 CCGGTCTGAT
12063247 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12063273 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
12063298 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12064579 original size:889 final size:887
Alignment explanation
Indices: 12060558--12065898 Score: 6532
Period size: 893 Copynumber: 6.0 Consensus size: 887
12060548 ATAAACTCCA
* * * *
12060558 TATGCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAATGAACGTGCAGGAGC
1 TATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * **
12060622 TCAACCGGCTAGAGGGGCGGGATGCACAAGATGGGGATCGGTCGGGTCCCCCTCTGCATGCTACC
65 TCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACC
* * * *
12060687 GATCCTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACT-GGAAATTAACTTCGTATGCCTA
130 GATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGG-AATGAACTCCGTATGCCTA
** *
12060751 AGCCAACCGACG-AA--A-CAAGCGGGCGGGCGGGCACTACG-CTGGCCAGAGAGACGGGATGTG
194 AGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCG
* * *
12060811 CAAGCCATGGATCAATAGGGTGGTCGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAATG
258 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
12060876 CCA-TTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
12060940 GACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTGTGGTTCGAGATTTTTTAAAAATT
388 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT-AAAATT
* *
12061005 TTTTTGGAAGGAGTTTTGGCC-CAAAACTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
452 TTTTCGGAAGGAGTTTTGGCCAC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
12061069 CAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCC
516 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
12061134 ATTTCAGACACTTTAATGGCCACTGGCAGTAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGT
581 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
12061199 GCGAGTTCTTGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCA-CCACCA
646 GCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
12061263 CACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
711 CACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
12061327 TCTCGATGATAGTTCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCCGTACATGCCTGAGC
776 TCTC----------CGACGATGGTGCCC-GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
** ** * * * ** *
12061392 CCAAAATGTGCTATCGCAAACCTCGGTCCTATCTGATCTTAGACTGGGAATCAACTCCA
830 CCAGCATGTGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAGGTCCG
* * * * * * * *
12061451 TATGCTTATACTAGGAATGAACTCCGTATGCCTAAGTTAACACACGAAACAAGCGTGCAGGCGTT
1 TATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** * * * ** *** * *
12061516 CAGCTAGCCAGAGGGGTGGGATGCATAAACCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCA
66 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCG
* * * * *
12061581 ATCCTACTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTAGAAATGAACTCCGTATGCCTAAG
131 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* *
12061646 CCAACTGACGAAATGA----GCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * ** *
12061707 GCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATAGTTCTGTGTTCCAATGCCA
261 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
12061772 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
12061837 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTG
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * * * * *
12061902 CAGAAGGATTTTTTGCCCCAAACATGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAA
456 CGGAAGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
12061967 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACTATTTGACAAAAGTGTCCCTATTTC
521 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
12062032 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAG
586 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAG
*
12062097 TTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGG-CAAGTACCAGCACCCATCGCACAT
651 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
12062161 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTC
716 CATGTGCACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA--------
* * * * *
12062226 GGTGATGCTCCGGCGATGGTG-CCGGACGAACAAAAATACAGCACCAGCACATGCTCGAGCCCAG
773 GGT--T-CTCCGACGATGGTGCCCGG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* **
12062290 CATGTGCTGCCACAACCCTCGGTCCAGT-TCGATCTTAGACTGGGAATGAACTCCG
834 CATGTGCTGCCGCAACCCTCGGTCC-GTCT-GATCTTAGACTGGGAATGAGGTCCG
12062345 TATGCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTTA
1 TATGCTTAGACTGGGAATGAACTTCGTATGC-----C------T-AA----G--T--C------A
* * * *
12062410 ATCCACGAAACGAGCGTGTGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGTCGGGGATCG
40 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCG
* * * * * * * * *
12062475 GTCGGGTCCCTCTCTACATGCTGCCAATCCTACTGCTGCAACCTTCGGTCCAGTCTAATCTTAGA
105 GTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGA
* * ** *
12062540 CTAGGAGTGAACTCCGTATGCCTAAGCGAACCGACGAAACAAGCGAGCGGGCGGGCGGGCACTAC
170 CTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTAC
* * *
12062605 GTCGGCCAGAGAGACGGGATGCGCAAGCCATGGTTCGATCGGGTGGTTGGTGGGTTTAGGCACAT
235 GTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
12062670 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
300 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
12062735 CTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
365 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* * * * * *
12062800 TGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGTGTTTT-GCCCCAAACTTGGTAGACATGATCC
430 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAAACTTGGTAGACGTGATCC
* * **
12062864 TTTTATTGTTGTTGGCATGCACAAAAAAAGTTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTG
495 TTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
*
12062929 ACCATTTGAAAAAAGTG-CCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAAT
559 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
12062993 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCGAATATAAG
624 CTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
12063058 GGCCAAGTACCAGCACCCATCGCACATCATGTGTGA-ACA-CCCCCCGGCCCCCCCGATCGTCGG
689 GGCCAAGTACCAGCACCCATCGCACATCATGTG-CACACACCCCCCCGGCCCCCCCGATCGTCGG
* * *
12063121 AACCCTAATGCCGCCGGTCAGTTTCTCCGATGATGCTCCGACGATGTTGCCCTGACGAAGAAAAA
753 AACCCCAATGCCGCCGGTCAG-------G-T--T-CTCCGACGATGGTGCCC-GGCGAAGAAAAA
* * *
12063186 TGCGACACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTA
806 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GTCTGATCTTA
**
12063251 GACTGGGAATGAACTCCG
870 GACTGGGAATGAGGTCCG
* * * **
12063269 TATGCTTAGACTGGGAATGAAC-TCTGTATACCTAAGTCAACCCACGAAATGAGCGTGTGGATGC
1 TATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * ** *
12063333 TCAGCCGGCCAAAAGGGCGGGATGCGCAAGCCGAGGATCGATTGGGTCCCTTTCTGCGTGCTACC
65 TCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACC
* * * * *
12063398 GATCCTGCTGCTGTAACCCTCGGTCTGGTCCT-ATATTAGACTGGGAATGAACTCCGTATGCCTA
130 GATCCTGCTGCCGCAACCCTCGGTCCGGT-CTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
* * *
12063462 AGCCAACCGACAAAACGAGTGAGCAGGCGGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGAT
194 AGCCAACCGAC-GAA--A-TGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
12063527 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
255 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
12063592 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
320 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
12063657 CAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
385 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA
* * * * * * *
12063722 TTTTTTTGGATGGAGTTTTGG-TAAACAACTTGGTGGACATGATCCTTGTATTTTTTTTGGCATG
450 TTTTTTCGGAAGGAGTTTTGGCCACA-AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
12063786 CACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
514 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
12063851 CCATTTCAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGA
579 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
12063916 GTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
644 GTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * *
12063981 CGCACATCATGTACATACACCCCCCCGGCCCCCCTGATCGTCGAAACCCCAATGCCGTCGATCAG
709 CGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * *
12064046 GTTCTCCAACGATGGTGCACCGGCAAAGAAAAATGCGGCACCAGAACATGCCCGAGCCCAGCATG
774 GTTCTCCGACGATGGTGC-CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* *
12064111 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGATTGAGGTCCG
838 TGCTGCCGCAACCCTCGGTC-CGTCTGATCTTAGACTGGGAATGAGGTCCG
* *
12064162 TATGCTTACACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTT
1 TATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** ** * * * *
12064227 CAGTTGGCCAGAACGGTGGGATGCGCAAGCCGGGGATCGGGCGGGTCCCCCTCTGCATGCTGCCG
66 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCG
* * * *
12064292 ATCTTGCTGCCACAACCCTTGGTCCGGTCTGATCATAGACTAGGAATGAACTCCGTATGCCTAAG
131 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* *
12064357 CCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
196 CCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
12064422 GCCGTGGATCGATCGGGTGGTTGGTGGGTTTCGGCACATCTTCATATTTCTGCATGCCAATGCCA
261 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
**
12064487 TTTTTATATCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
12064552 GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * * * *
12064617 TGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCA-AAAA
456 CGGAAGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
12064681 AATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
521 AA-ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
12064746 CAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGCGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGA
*
12064811 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * * * *
12064876 TCATATGTATACAACCCCCCCGGCCCCCCTGATCGCCAGAACCCCATTGCCACTGGTCAGGTTCT
715 TCATGTGCACAC-ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA-G----
* * **
12064941 TCGATGATGCTCCGGCGATGGTGCCTCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGTAC
774 --G-T--T-CTCCGACGATGGTGCC-CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
*
12065006 AGCATGTGCTGCCGCAA--------CC--C---TC--AG--T----CT--GGTCCG
832 AGCATGTGCTGCCGCAACCCTCGGTCCGTCTGATCTTAGACTGGGAATGAGGTCCG
* * *
12065039 -AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGTT
1 TATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * *
12065102 CAGCCGGCTAGAGGGGCGGGATGCGCAAGCCGGGCATCGGTCGGGTCCCCCTCTGCATGCTACCG
66 CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCG
* * * *
12065167 ATCCTGCTGCCGTAACCCTCAGTTCGGTCTGATCTTAGATTAGGAATGAACTCCGTATGCCTAAG
131 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* *
12065232 CCAACCGACGAAACGAGCGGGCAGGCGAGTGTGCCGGCGAGCACTACG-CGGCCAGAGAGACGGG
196 CCAACCGACGAAATGAGCGGGC-GG-GCG-G-G-C-G-G-GCACTACGTCGGCCAGAGAGACGGG
* * * ***
12065296 ATGCGCAAGCCGTGTATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGC
253 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
12065361 CAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCAT
318 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
12065426 GGCAAGACGACT--TTTTCTATTTTTCATGATTTTTGAAACTTTTTG-TGTTCGAGATTTTTTAA
383 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAA
* * * * * *
12065488 AATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTTTTTGCAT
448 AATTTTTTCGGAAGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
12065553 GCACAAAAAAATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTC
513 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
12065618 CCCATTTCAGACACTTTAATGGCTACTGGCAAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGG
578 CCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
12065683 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG----C
642 GGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
12065744 A-C-C-CATC----GCACAC-CCCCCTCAGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTC
707 ATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
* * *
12065801 AGGTTCTCTGACGATGCTCAGGCGATGGTGCACCGGTGAAGAAAAGTGCAGCACCAGCACATGCC
772 AGGTTCTC---C---G---A--CGATGGTGC-CCGGCGAAGAAAAATGCGGCACCAGCACATGCC
* ** *
12065866 CAAGCCCAGCATGTGCTGCTACAACCTTCGGTC
825 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
12065899 TGGTTCGAGG
Statistics
Matches: 3913, Mismatches: 408, Indels: 272
0.85 0.09 0.06
Matches are distributed among these distances:
856 3 0.00
857 1 0.00
859 2 0.00
860 1 0.00
862 1 0.00
866 1 0.00
867 94 0.02
868 1 0.00
869 4 0.00
873 4 0.00
874 1 0.00
875 194 0.05
876 6 0.00
877 8 0.00
878 1 0.00
879 159 0.04
880 127 0.03
881 1 0.00
882 146 0.04
883 9 0.00
885 2 0.00
887 2 0.00
888 6 0.00
889 478 0.12
890 41 0.01
891 1 0.00
892 16 0.00
893 773 0.20
894 272 0.07
895 10 0.00
896 2 0.00
897 2 0.00
898 138 0.04
899 5 0.00
900 2 0.00
901 65 0.02
902 296 0.08
903 186 0.05
904 42 0.01
905 4 0.00
906 3 0.00
908 1 0.00
910 1 0.00
912 3 0.00
913 1 0.00
915 1 0.00
919 1 0.00
920 146 0.04
922 1 0.00
923 219 0.06
924 427 0.11
925 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
TATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
CAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCG
ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
GACGATGGTGCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCGTCTGATCTTAGACTGGGAATGAGGTCCG
Found at i:12066721 original size:26 final size:26
Alignment explanation
Indices: 12066692--12066744 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12066682 TCGGTCCGAT
*
12066692 CTTAGACTAGGACTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12066718 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12066744 C
1 C
12066745 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12070568 original size:26 final size:26
Alignment explanation
Indices: 12070538--12070588 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12070528 TTTGTCTTAG
12070538 GCATACGGAGTTAATTCCCAGTCTAT
1 GCATACGGAGTTAATTCCCAGTCTAT
*
12070564 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTAATTCCCAGTCTA
12070589 AGATCAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAT
Found at i:12070724 original size:185 final size:185
Alignment explanation
Indices: 12070379--12070804 Score: 496
Period size: 185 Copynumber: 2.3 Consensus size: 185
12070369 GTTGGCATAG
* * * *
12070379 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGATTACGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAAAATAGACA
* * * * * * * *
12070444 ACACGCAGATGGGGACCCGACAGATCTCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGC
66 ACAAGCAGAGGGGGACCCGACAGATCCCCGACTTGCGCATACCACCCCTCTAGCCGGCTAAGCGC
* * * * * * *
12070509 CTGCATGCTCGGTTCGTGGTTTGTCTTAGGCATACGGAGTTAATTCCCAGTCTAT
131 CCGCACGCTCGGTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAATCTAA
* ** *
12070564 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTTGTAAAATTAG-C
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAAAA-TAGAC
* * ** *
12070628 AGCAAGCAGAGGGGGACCTGATC-GATCCCCGACTTGCGCATACTGCCCCTCTAGCCGGCTAAGT
65 AACAAGCAGAGGGGGACCCGA-CAGATCCCCGACTTGCGCATACCACCCCTCTAGCCGGCTAAGC
* * * *
12070692 GCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
129 GCCCGCACGCTCGGTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAATCTAA
* * * *
12070749 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCA
12070805 CATGCTAGGC
Statistics
Matches: 199, Mismatches: 40, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
185 196 0.98
186 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAAAATAGACA
ACAAGCAGAGGGGGACCCGACAGATCCCCGACTTGCGCATACCACCCCTCTAGCCGGCTAAGCGC
CCGCACGCTCGGTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAATCTAA
Found at i:12070753 original size:26 final size:26
Alignment explanation
Indices: 12070723--12070775 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12070713 GTTGACTTAG
12070723 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
12070749 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12070775 G
1 G
12070776 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12072558 original size:26 final size:26
Alignment explanation
Indices: 12072522--12072574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12072512 GTTGACTTAG
12072522 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
12072548 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12072574 G
1 G
12072575 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12073260 original size:899 final size:899
Alignment explanation
Indices: 12070564--12081278 Score: 11677
Period size: 899 Copynumber: 12.1 Consensus size: 899
12070554 CCCAGTCTAT
** * * * ** **
12070564 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTTGTAAAATTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * * *
12070629 GCA-AGCAGAGGGGGACCTGATCGATCCCCGACTTGCGCATACTGCCCCTCTAGCCGGCTAAGTG
66 GCACA-CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
12070693 CCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
12070758 GTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
195 GTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
12070822 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAG-ATC-TC---G-ACC-GA--
259 TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
* * * * *
12070878 --CGGTATTAGGGTTCTGACGATCGGGGGGGCCGGGGAGTGGGCGCACATGATGTGCGATGGGTG
324 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* **
12070941 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAAAGAACTCACACCCCCTTA
389 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* ** *
12071006 AGGAGCATTTGAGATTTTATTGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
454 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
12071071 TTTGTGAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATGCCA
519 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
12071136 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
584 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
** * * *
12071201 AATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
649 AATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
12071266 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCACGT
714 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
12071331 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
779 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
12071396 TCTCTGCCCGGCATAGTGCCCCGCCCGCCCGCCCACCCGCCCGTTCGTTTCGTCGGTTAGCTTAG
844 TCTCTGGCCGGCGTAGT-----GCCCGCCCGCCCACCCG--C--TCGTTTCGTCGGTTGGCTTAG
* * * ** *
12071461 GCATAGGGAGTTCATTCCCAGTCTAAGATC-GAACCAAACCGAGGGCTGCGGTAGCAACATCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGTAGCAGGATCGGC
* * * * * * * *
12071525 AGCATACAGAGGGGGACCCGGCCGATCCCCAGCTTGCTCATCCTGCCCTTCTAGCCGGCTGAGCA
65 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
12071590 CCCGCATGCTCGTTTCGTAGGTTGACTTAGGCATACGG-GTTTCATTCCCAGTCTAAGCACACGG
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG-TTCATTCCCAGTCTAAGCATACGG
* * *
12071654 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCCGGCAGCACATGCTCGGCTCGGGCA
194 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * * * * * *
12071719 TGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACTATTGTCGGAGCATCGCCAGAGAACTTGATC
259 TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
* * * *
12071784 GACGGCATTGGGGTTTCGGCGATCGGGGGGGCTGGGCGGGGTGTGCGCACATGATGTGCGATGGG
324 GGCGGCATTGGGGTTCCGACGATCGGGGGGGC-CGG-GGGGTGTGCGCACATGATGTGCGATGGG
* *
12071849 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAGCCCCT
387 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
12071914 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
452 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
12071979 CTTTTTTCAAATGGTCACAAAATGTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATAC
517 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * * **
12072044 CAACAAAATTACGAGGATCACGTCTACCAAGTTTGGGACCAAAAATTCTTTCTGAAAAAATTTTA
582 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAAAAAAATTTTA
* * * * *
12072109 AAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATTGTCTTGCCATG
646 AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
12072174 AAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
711 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
12072239 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
776 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * **
12072304 GTCTCTTTGGCCAGCGTAGTGCTCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
841 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** ** * * *
12072363 GCATACAGAGTTTATTCCCAGTCTAAGATTGGACCAGATTGAGGGTTACAGTAGCAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * *
12072428 ACACACAGAGGAGGACCCGATCGATCCTCGGCTTGCGCATGCCGCCCCTCTGGTCGGCTGAGCAC
66 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
12072493 CCACACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* ** *
12072558 TTCGTTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
196 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * ** * *
12072623 TGCTGGTGTCGCATTTTTTTTCACCGGGGCACCATCATCGGAGCATCATCGGAGAACCTGACTGG
261 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGG
* * *
12072688 CGGCATTGGGGTTCCGACGATCGGGGGGGGCCGGGGGGTGTTCGCACATGATGTGCAATGGGTAC
326 CGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
12072753 TGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCCTTAA
390 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
12072817 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTT
455 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
12072882 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCTTGTCAA
520 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
12072947 CAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
585 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
*
12073012 ATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATA-AAAACCGAGTCGTCTTGCCATGAAA
650 ATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAA
*
12073076 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
714 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * *
12073141 AGAAGTATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACAGCTTGCGCATCCCATC
779 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * *
12073206 TCTTTGGCTGGCGTAGTGCCTGCTCGCCCACCCGCTCATTTCATCGGTTGGCTTAG
844 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
** * ** * * *
12073262 GCATATAGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGCTATGC--CAACAGGATTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-T-TGCGGTAGCAGGATCGG
* * * * * *
12073325 CAGCACGCAGAGGGGGACCTGGCCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGC
64 CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
12073390 GCCCACACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
12073455 AGTTCATTCCCAGTCTAAGATCAGATCAGA-TCGAGGGTTACGGTAGCACATGCTAGGCTCGGGC
194 AGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** **
12073519 ATGTGCTGGTGCCAAATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
258 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * * * *
12073584 AGGTGGCATT-GGGTTCCGATGATCGGGGGGGTCGGAGTGGTGTGCGCACATGATGTGTGATGGG
323 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGG
*
12073648 TGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
387 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
12073713 TAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
452 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
12073778 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGC
517 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
12073843 CAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGTCAAAACACCTTCCTAAAAAAATTTT-
582 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTA
* * *
12073907 AAAAATCCCGAAGCACAAAAAGTTTTGAAAATC--G-----T-G-AAA--AGTCGTCTTGCCATG
646 AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
12073961 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
711 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
12074026 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
776 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
12074091 GTCTCT-TGGGCCAGCGTAGTGCCTGCCCGCCCACCCGCTCGCTCGTTTCGTGGGTTGCCTTAG
841 GTCTCTCT-GGCCGGCGTAGTGCCCGCCCGCCCA--C-C-CGCTCGTTTCGTCGGTTGGCTTAG
* * ** * * * *
12074154 GCATACGGAGTTCATTCCCTGTCTAACATTGGACCGGACCAAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * *
12074219 GCACATAGAGGGGGA-CTGGCTGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
66 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
12074283 CCGCTCGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
12074348 TTCATTTCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
196 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
12074413 TGCTGGTGCTGCATTTTTATTCGTCGGGG---CA----C----CATCGTCGGAGAACTTGACCGA
261 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGG
* * * * *
12074467 CGGCATTGGGGTTTCGGCAATC-GGGGGGCCGAGGGTGGTGTGCACACATAATGTGCGATGGGTG
326 CGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGG-GGTGTGCGCACATGATGTGCGATGGGTG
* * * *
12074531 CTGGTACTTGGCACTCATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTA
389 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
12074596 AAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAT-GGGACAC
454 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACAC
* * * *
12074660 TTTTTTCAAATGGTCACAAAATCTTTTACACTTAGAGTTTTTAGCTGAATTGTTTTGTGTATGCC
518 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
**
12074725 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCCTTCCAAAAAAATTTTAAA
583 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* * * *
12074790 AAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGACTCGTCTTGCCATGAA
648 AAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
12074855 ACTTCACGTGAAGGCCTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
713 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * *
12074920 CGGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCACATCTCAT
778 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
12074985 CTCTCTGGCCGACGTAGTGCCCGCCCTCCCACCTGCCCACTTGTTTCGTCGGTTGGCTTAG
843 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCA----CCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
12075046 GCAGACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGCTCGCGGTAGCAGGATCTGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
*
12075111 G----C--------A--CG--C-A----------G-G-A---------TCTGGCCAGCTGAGCGC
66 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
12075138 CCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAG-AT-TGGA-
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
** ** * * * * ** * *** *
12075200 --C---CGGA-TGGAAGGT-TG--TGG-CATGCGCTGG-TGC--C-GCATTTTTCTTCACTGGGG
196 TTCATTCCCAGTCTAAGATCAGACCGGAC-TGAG--GGTTGCGGCAGCA-CATGCTGGGCTCGGG
* * * * * * * * * * **
12075251 CA---CCATCGT--CGGA----GCATCGCTGGAGAACC-T-GACCGGTGGCAT--T-GGGGTTCC
257 CATGTGC-TGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG-CCGG-AGCATCGTCGGAGAACC
* * ** * ** * ** *
12075302 GATGATCGGGGGGC-GGGGGGTGTGCG-C-A-CGTGATGTG-CGATGGGTGCTG-GTAC-T--TG
319 --TGA-CCGGCGGCATTGGGGT-TCCGACGATCG-GGGGGGCCGGGGGGTG-TGCGCACATGATG
* ** ** * **** * * *
12075358 -GC-------CCTTATA-TTGGCCC-CCTA-T---CCCTTATTAAACCTCGAAAACTC-ACACCC
378 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGA---
* * * *** * ** * * * * * *** *
12075408 CCTTAAAGAGCATTTCAGA--TTTTACAGGTTTGCTGCCA-G-TAGCAATTAAAGT-GTC--TAA
439 ACTCACACCCCCTTAAAGAGCATTT-GAGATTT--T-ACAGGTTTGC--TGCCAGTAGCCATTAA
* ** * ***** * ** ** * * ***
12075466 AATG-GGGACACTTTTTTCAAATGGTCACAAAATCTTGT-AC---A-CTTCG---AGTTTTT---
498 AGTGTCTGA-AATGGGGAC-ACTTTTTTC-AAA--TGGTCACAAAATCTT-GTACACTTCGAGTT
* * * ** *
12075519 ---AGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGCCTAACAAGTTTGGCTCT
557 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
12075581 AAAATTCCATCCAAAAAAATTTTAAAAAATCCCGAACCAG-AAAAAG-TTTGAAAATCGTGAAAA
622 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACC-GCAAAAAGTTTTAAAAATCGTGAAAA
* *
12075644 ATAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTT
686 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
12075709 ACAAGCCATAAAAATGGAATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
751 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
12075774 TATCGATCCACGGCTTGGGCATCCCGTCTCTCTGGCCGGCGTCGTGCCCGCCCGCCCACCCGGTC
816 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTC
* *
12075839 GTTTCGTCGATTAGCTTAG
881 GTTTCGTCGGTTGGCTTAG
* ** * * ** *
12075858 GCATACGGATTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * *
12075923 GCACACAGAGGGGGACCC-AGTCGATCCTCGGCTTGCGCATCCCACCCCTCTGGGCGGCTGAGTG
66 GCACACAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
** * *
12075987 CCCGTGCGCTCGTTTCGTGGGTTG-CTTAGACATACGAAGTTCATTCCCAGTCTAAG-AT-C-G-
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*
12076047 G---A-T---AG-----GAT---------C-GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
195 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * ** *
12076090 GTGCTGGTGCCGCATTTTTCTTCGTCGGGACACAATCGTCGAAG-ATTCAACGAAGAACCTGACC
260 GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCA-TCGTCGGAGAACCTGACC
** * ** * *
12076154 GATGGCATTGGGGTTCCAACGATCGATGGGGTCGGGGGTGGGGGGTGTGCACACATGATCTGCGA
324 GGCGGCATTGGGGTT-C--CGA-CGATCGGG--GGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* ** *
12076219 TGGGTGATGGTACTTGGCCCTTATATTGGCCCTGTATCCCTCATCAAACCTTGAGAACTCACA-C
383 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
12076283 CCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
448 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
** **
12076348 GACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGACATTTTAGCTGAATTTTTTTGTGC
513 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
12076413 ATTCCAA-AAAAATACGAGGATCATGTCTACTAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATT
578 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * * *
12076477 TTGAAAAATCCTGAACCGAAAAAAGGTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
643 TTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
12076542 ATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
708 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** *
12076607 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT
773 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
12076672 CCCATCTCTTTGGCCAGCGTAGTGCCCGCCCACCCGCTCGC-CTGCCAGCTCATTTCGTCGATTG
838 CCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGC-C-CAC--CC-GCTCGTTTCGTCGGTTG
12076736 GCTTAG
894 GCTTAG
* * * * * *
12076742 GCATATGGAGTTCATTTCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * ** * *
12076807 GCACGCAAAGGGGGACCCGGGCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
66 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * **
12076872 CCCCACACTCGTTTCGTCGGTTGACTTAGGCATAAAGAGTTCATTCCCAGTCTAAGCATACGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* *
12076937 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
196 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * * *
12077002 TGTTGGTGCCTCATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGA
261 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGG
* * *
12077067 CAGCATTGGGGTTCCGATGATC-GGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCT
326 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
12077131 GGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAA
391 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
12077196 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGAGACACTTT
456 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * **
12077261 TTTCAAATGGTGACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATTACAAC
521 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * ** *
12077326 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTCGCAAAAATTTAAAAAAA
586 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * * * *
12077391 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTCCCATGAAACT
651 TCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * **
12077456 TTATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACATAG
716 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
12077521 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTC
781 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
12077586 TCTAGCCGACGTAGTGCTCGCCTGCCCA----CTCGTTTCGTCTGTTGG-TTAG
846 TCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *** * *
12077635 GTATATGGAGTTCATTCCCAATCTAAGACCAGACC-GAACTGAGGGTTGCTACAGCGGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGTAGCAGGATCGGC
** * * * * *
12077699 AGCACGGAGAGGGGGACCCAACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAACG
65 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
12077764 CCCGCACGCTCATTT-TTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
12077824 G---A----C---C---G----GA-C---C-GAGGGTTGTGGCAGCACATGCTGGGCTCGGACAT
195 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* *
12077867 GTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT---C---G---C-T-GGAGAACCTGACCG
260 GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
*
12077921 GCGGCATTGGGGTTCC-AGCGATC-GGGGGGCC-----GTGTGCGCACATAATGTGCGATGGGTG
325 GCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
12077979 CTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCAC-T
389 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-CTT
*
12078043 AAAGAGCAGTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
453 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
12078108 TTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATTCC
518 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
12078173 AA-AAAAATTACAAGGATCACGTCTACTAAGTTTGGGGTCAAAACTCCTT-CAGAAAAAATTTTA
583 AACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA-AAAAAATTTTA
* *
12078236 AAAAATCCCGAACCGTAAAAAGGTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
646 AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
12078301 CAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
711 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * ** **
12078366 CACAAAAATATGAAGATGTGCCTAAAGTCACCTACCACCCTATCGATCCACGGCTTGTACATCCC
776 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * **
12078431 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAG
841 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
12078490 GCATAGGGAGTTCATTCCCAATCTAAGATCAAACCAGACCAAGGGTTGTGGTAGTAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * *
12078555 GCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCTGCGCCTCTGGCCGGTTGAGCCC
66 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
12078620 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATATGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
*
12078685 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATG
196 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
12078750 TGCTGGTGCCTCATTTTTCTTTGCCGGGGCAACATCGCCGGAGCATCGCCGGAGAACCTGACCGG
261 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGG
* * *
12078815 CAGCATTGGGGTTCCGAGGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGT
326 CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
12078880 TGGTACTCGGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTTGAGAACTTACACCCCCTTA
390 TGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
12078945 AAGGGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTTTGAAATGGGGACACT
454 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
12079010 TTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
519 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
12079075 ACAAAAATACAACGATCATGTCTACCAAATTTGGGGTCAAAACACCTTCCAAAAAAATTTTAAAA
584 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
** * * * *
12079140 AATCTGGAACCGCAAAATGTTTTCAAAATTGTGAAAAATAGAGAACGAGTCGTCTTGCCATGAAA
649 AATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
12079205 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACGC
714 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * *
12079270 AAAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTACGCATCCCGTC
779 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
12079335 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTTGCCCGCTCGTTTTGTCGGTTGGCT
844 TCTCTGGCCGGCGTAGT----GCCCG--C-CC-G-CC-C--ACCCGCTCGTTTCGTCGGTTGGCT
*
12079400 GAG
897 TAG
* * ** * *
12079403 GCATACGGAGTTCA-T-----TCTAAGAT-TGCACCAGACAGAGGGTTATGATAGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGTAGCAGGATCGGC
* * * ** ** *
12079461 AGCACGCAGAGGGGGACCTGACCGATCCCCTGCTTGATCATCCCGCCCCTCTGGCCAACTGAGTG
65 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
12079526 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * *
12079591 GTTCATTCCCAGTTTAAGATCAGCCCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTAGGGCAA
195 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * *
12079656 GTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATTGCCGGAGCATCGCCGAAGAACCTGACCG
260 GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* *
12079721 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGGTGGGT
325 GCGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
12079786 GCTGGTGCTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAG-ACTCACACCCTCTT
388 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
12079850 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
453 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
12079915 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAT-AATTTTTTTGTGCACGC
518 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTGTGCATGC
* * ** *
12079979 CAACAAAAATACAAGGATC-CATCTACCAATTTTGGGGCCAAAACTCCTTCTGAAAAAATTGTAA
582 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
* * * *
12080043 AAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
647 AAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
12080108 AAATTCACGTG-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
712 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
12080172 CCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
777 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
12080237 TCTTTCTGGTCGGCATAGTGCTCGCCCGCCCACCCGCCTACCCGCCCATCCGCTCATTTCGTCGA
842 TCTCTCTGGCCGGCGTA--G-T-GCCCG----CCCGCCCACCCG--C-T-CG----TTTCGTCGG
12080302 TTGGCTTAG
891 TTGGCTTAG
* *
12080311 GCATACGGAGTTAATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * *
12080376 GCACACAAAGGGGGACCTGACCGATCCCCGACTTGCGCGTCTCGCCCTTCTGGCCGGCTGAGCGC
66 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
12080441 CCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-AT-C-G-G
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
**
12080502 ---------A--C-----T-AGA-C---C-GAGGGTTATGGCAG----TGCAT--GCT-----A-
196 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGC-TGGGCTCGGGCAT
* * * * *
12080533 G-GCTGGTGTCGCATTTTTCTTTGCCGGGGCACCATCACTGGAGCATCGTCGAAGAACCTGACCG
260 GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * *
12080597 GTGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGGATGTGCGCACATGATGTGCGATGGGT
325 GCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATGGGT
*
12080661 GCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
388 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
12080726 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAACGTGTCTGAAATGGGGACAC
453 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
12080791 TTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGGTTTTAGCTGAATTTTTTTGTGCATGCC
518 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
12080856 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGGGCCAAAACTCCTTCCAAAAAAATTTTC
583 AACAAAAATACAAGGATCACGTCTACCAAGTTT--GGGGCCAAAACTCCTTCCAAAAAAATTTTA
** * * *
12080921 AAAGTTCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCGATG
646 AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
12080986 AAGCTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
711 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * * * *
12081051 CGCAAAAATTTGAGGATGTGCCTAAACCAACCTACCACCCTATTGATCCATGGCTTGCACATCCT
776 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
12081116 GTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
841 GTCTCTCTGGCCGGCGTAGTG--C-CC-G----CCCGCCCACCCGCTCGTTTCGTCGGTTGGCTT
12081181 AG
898 AG
* * * * * * * * ** *
12081183 GTATACGAAGTTCATTCCCAATCTAGGATCTGACCGGATCGAGGGTTACGAAAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * **
12081248 GCACCCAAAGGGGGAATCGACCGATCCCCGG
66 GCACACAGAGGGGGACCCGACCGATCCCCGG
12081279 TGTCACGGGT
Statistics
Matches: 8324, Mismatches: 1131, Indels: 751
0.82 0.11 0.07
Matches are distributed among these distances:
812 74 0.01
816 187 0.02
817 94 0.01
818 1 0.00
823 3 0.00
824 13 0.00
825 15 0.00
826 13 0.00
827 18 0.00
828 11 0.00
829 15 0.00
830 7 0.00
833 2 0.00
834 9 0.00
835 2 0.00
836 10 0.00
837 7 0.00
838 7 0.00
839 3 0.00
840 9 0.00
841 10 0.00
842 22 0.00
843 9 0.00
844 31 0.00
845 25 0.00
846 7 0.00
847 7 0.00
848 1 0.00
849 38 0.00
850 498 0.06
851 2 0.00
852 4 0.00
853 11 0.00
854 20 0.00
855 224 0.03
856 41 0.00
857 5 0.00
859 1 0.00
860 2 0.00
863 5 0.00
864 12 0.00
865 14 0.00
866 78 0.01
867 23 0.00
868 8 0.00
869 5 0.00
870 15 0.00
871 2 0.00
872 97 0.01
873 1 0.00
874 6 0.00
875 149 0.02
876 441 0.05
877 16 0.00
878 6 0.00
879 97 0.01
880 188 0.02
881 291 0.03
882 69 0.01
883 6 0.00
884 149 0.02
885 31 0.00
886 2 0.00
887 2 0.00
888 184 0.02
889 3 0.00
890 7 0.00
891 193 0.02
892 355 0.04
893 164 0.02
894 25 0.00
896 4 0.00
897 269 0.03
898 55 0.01
899 775 0.09
900 256 0.03
901 461 0.06
902 322 0.04
903 15 0.00
904 222 0.03
905 238 0.03
906 421 0.05
907 337 0.04
908 94 0.01
909 4 0.00
910 247 0.03
911 319 0.04
912 3 0.00
913 38 0.00
914 141 0.02
915 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
TCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:12073450 original size:26 final size:26
Alignment explanation
Indices: 12073421--12073473 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12073411 GTTGACTTAG
12073421 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12073447 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12073473 G
1 G
12073474 ATCAGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12074348 original size:26 final size:26
Alignment explanation
Indices: 12074312--12074364 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12074302 GTTGACTTAG
12074312 GCATACGGAGTTCA-TTCCTAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
12074338 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
12074364 G
1 G
12074365 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:12078679 original size:26 final size:26
Alignment explanation
Indices: 12078649--12078701 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12078639 GTTGACTTAG
*
12078649 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12078675 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12078701 G
1 G
12078702 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12082894 original size:26 final size:26
Alignment explanation
Indices: 12082858--12082910 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12082848 GTTGACTTAG
12082858 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12082884 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12082910 G
1 G
12082911 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12084420 original size:45 final size:45
Alignment explanation
Indices: 12084356--12084446 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
12084346 GGTTGGCTTA
*
12084356 GGCATACGGAGTTTATTCCCAGTCTATAATCGGACCGGATCGATG
1 GGCATACGAAGTTTATTCCCAGTCTATAATCGGACCGGATCGATG
* *
12084401 GGCATACGAAGTTTATTCCCAGTCTATAATTGGACTGGATCGATG
1 GGCATACGAAGTTTATTCCCAGTCTATAATCGGACCGGATCGATG
12084446 G
1 G
12084447 TTGCAGTAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (45 bp):
GGCATACGAAGTTTATTCCCAGTCTATAATCGGACCGGATCGATG
Found at i:12085481 original size:26 final size:26
Alignment explanation
Indices: 12085445--12085517 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
12085435 TTAGGCTTAT
12085445 GGAGTTCATTCCCAGTCTAAGCATAC
1 GGAGTTCATTCCCAGTCTAAGCATAC
*
12085471 GGAGTTCATTCCCAATCTAAGCATAC
1 GGAGTTCATTCCCAGTCTAAGCATAC
*
12085497 AGAGTTCATTCCCAGTCTAAG
1 GGAGTTCATTCCCAGTCTAAG
12085518 ATAGGATCGG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (26 bp):
GGAGTTCATTCCCAGTCTAAGCATAC
Found at i:12087625 original size:894 final size:894
Alignment explanation
Indices: 12084561--12089812 Score: 6782
Period size: 894 Copynumber: 5.8 Consensus size: 894
12084551 GTTGACTTAG
* *
12084561 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12084626 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTC-TCCT-GGGCACCATCACCAGAGCATCACAGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT--TGGGGCACCAT---C---G---C-CA-GA
* * * * * *
12084689 GCATCATCGGAGAACCTGACCGGCGACATTGGGGTTTC-ATCCATTGGTGGGGCCGGGGGGTGTG
118 GCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTG
* * *
12084753 CACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAAC
182 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
12084818 CTCGAGAACT--CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
247 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
12084881 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
312 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
12084946 CTGAATTGTTTTATGCGTGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
377 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
*
12085011 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAAT-AAAAATAGA
442 TCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC-ATGAAAAATAGA
12085075 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
506 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * *
12085140 CCATAAAAATGGCATTAGCTCACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
571 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
12085205 ATCCACGGCTTGCGCATCCCGTATCTCTGGCCGGTGTAGTGCCCGCCCACCCGCTCGTTTCATCC
636 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCG
* ** *
12085270 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATGGGACCAGACCGAGGGTTGCGGCAAC
701 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGC
* *
12085335 AGGATC-AGCAGCACGCAGAGGGGGACCCGATCAATCCCCGACTTGCGCATCCCACCCCTCTGGT
765 AGGATCGA-CAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGC
* * * * *
12085399 CGGCTGAGCGCCTGCATGCTCGTTTCGTGGGTTAACTTAGGCTTATGGAGTTCATTCCCAGTCTA
829 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
12085464 A
894 A
*
12085465 GCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATAGGATCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C------A-GA-C----
* * * * * *
12085530 CGAGGGTTGCGGTAGCACATGCTAGACTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGG
* *
12085595 CACCAT---C---G-----TCGGAGAACCTGACCGGCGGGATTGGGGTTCCGACGATCGGGGGGG
105 CACCATCGCCAGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* *
12085649 TCGGGGGG-GTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
170 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
** *
12085713 CTTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
12085778 CAGTAGCCATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
300 CAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * ** *
12085842 CTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAACAATCATGTCTACCAAGT
364 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
*
12085907 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGGTTT-AAAAAT
429 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAAT
* ** * ** *
12085971 CTTGAAAAATAGAAAATAAGTCGGCTTGTGATTAAACTTCACGTGAAGGCTTAAGGGACCATTGT
493 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** *
12086036 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGGCTAAACCCACC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACC
* *
12086101 GACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCCGCCCACC
623 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCCG----CC
* * ** * **
12086166 CGTCCGCTCGCTCGTTTCATCGGTAGGCTTAGGCATAAAGAGTTCATTCCCAATCTAAGATTGGA
683 CG--C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * * * * * * *
12086231 -TTGAACCAAGGGTTGTGGTAGCAAGATTGACAGCATGCAGAGGGGCACCCGACCGATCCCCAAC
744 CCAG-A-CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGAC
*
12086295 TTGCGCATCCCACCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
807 TTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
12086360 TACGGAGTTCATTCTCAGTCTAA
872 TACGGAGTTCATTCCCAGTCTAA
* *
12086383 G-AT-C-G-G---ATT----G-----GAT----------TGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12086422 CTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGATA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCAGAGCATCATCGGAGA
*
12086487 ACCTGACTGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
12086551 GATGGGGGCTGGTACTTGGCCCTTATATTGGCTCCCTATCTAC-CATCAAACCTCGAGAACTCAC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAACCTCGAGAACTCAC
* * *
12086615 ACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12086680 GGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
12086745 TGCTTGCCTACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCTAAAAATCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * ** *
12086810 AGTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12086875 GCCATTAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
12086940 TTGGCACATAGAAATATGAAGATGTGTTTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCG
585 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
12087005 CATCCCGTCTCTGTGGCCCGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCAGTTGGTTTAGGCAT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
12087070 ATGGAGTTCATTCCCAGTCTAAGTTCAGACCAGACGAATGGTTACGGTAGCAGGATCGACAGCAT
715 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACG-AGGGTTGCGGCAGCAGGATCGACAGCAC
* * ** * **
12087135 GTAGAGGGGGACCCGATCGATCCCCGATTTTTGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCAA
779 GCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGC
* * *
12087200 ACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTGATTCCCAGTCTAA
844 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12087251 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12087315 CTGGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGCCAGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCAGAGCATCATCGGAGA
* * *
12087380 ACCTGACCGACGGCATTAGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
12087445 GATGGGTGCTCGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAAAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12087510 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
12087575 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12087640 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAGCTCC-TTCCAAAAAC
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA-
* *
12087704 ATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* **
12087769 CCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTGTAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12087834 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCAACCATCCTATCGATCCACGGCTTGCG
585 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
12087899 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTCCGCCCACTCATTTCGTCGGTTGGCTTAGGCTT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* *
12087964 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATTGGCAGCAC
715 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGACAGCAC
* ** * * * * *
12088029 GCAAAGGGGGACTAGATCGATCCTCGACTTGCGCATCCTACCCCTCTTGCCGGTTGAGCGCCCGT
779 GCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGC
*
12088094 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12088145 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGTTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
12088210 CTCGTGCATGTGCTAGTGCCGTATTTTTCTTCGCTGGGGCACCATC-CTCAGAGCAACGCCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGC-CAGAGCATCATCGGAG
* ** *
12088274 AACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGTTGTGGGGGTGTCCGCACATGATGG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGAT-G
12088339 TGCGGATGGGTGCTGGTACTTGG-CCTTATATTTGGCCCCCCGTAATCCCTCATCAAACCTCGAG
193 TGC-GATGGGTGCTGGTACTTGGCCCTTATA-TTGG-CCCCC-T-ATCCCTCATCAAACCTCGAG
* * * *
12088403 AACTCACTCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGAGC
253 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
12088468 CTGAAATGGGGACA-TTTTATTCAAATGGTCGCAAAATCTTGTACACTTCAAGTTTTTAGCTG-A
318 CTGAAATGGGGACACTTTT-TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
12088531 TTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-T
382 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
12088594 TCCATAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTTAGAAATCATGAAAAATAGAAAACG
447 TCGA-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * * * * *
12088659 AGTTGTCTTGCCATAAAACTTCACGTGAAAGCTTAAGGGACCGTTGTATGAATTCACAAGCCACA
511 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
12088724 AAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCCAAACTCACCTACCACCCAATCGATC
576 AAAATGGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
*
12088787 CACGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCAGCCCGCTCGTTT
639 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C-CC-GCCCGCTCGTTT
* * * *
12088852 CGTC-GTTCGGCATAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGT
696 CGTCGGTT-GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGC
* * * * * *
12088916 GGCAGTAGGATCGGCAACACGCAGAGGGGGACTCGGTCGATCCCC-AGCTTGCGCATCCCGCCCC
759 GGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGA-CTTGCGCATCCCACCCC
* * * * * *
12088980 TCTGGCTGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTCACTTAGGCATACAGAGTTCATTCCC
823 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
12089045 AGTCTAA
888 AGTCTAA
* * * * * *
12089052 GCATACGGAGTTCATTCACAGTCTAAGATTGGATCAGACCGAGGGTTACGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12089117 CTCGGGCATGTGCTGGTG-TGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCAGAGCATCATCGGAGA
* *
12089181 ACCTGATCGACGGCATTGGGGTTCCGATGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
12089245 GATGGGTGCTCGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12089310 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACTGTCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
12089375 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
12089440 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGACCTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * * *
12089505 TTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTCTTC
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* **
12089570 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCTGTAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
12089635 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTACGA
586 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
12089700 ATCCTGTCTCTCTGGCCGACGTAGTGGCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
651 ATCCCGTCTCTCTGGCCGGCGTAGT-------GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* *
12089765 AGGCATACAGAGTTCATTCCCAGTCTAAGAT-TGACCAGACCGAGGGTT
709 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTT
12089813 CCGACAACAC
Statistics
Matches: 3818, Mismatches: 403, Indels: 259
0.85 0.09 0.06
Matches are distributed among these distances:
866 63 0.02
867 1 0.00
868 172 0.05
869 5 0.00
870 2 0.00
871 1 0.00
872 6 0.00
875 3 0.00
876 21 0.01
877 482 0.13
878 2 0.00
883 3 0.00
893 120 0.03
894 661 0.17
895 134 0.04
896 18 0.00
897 11 0.00
898 21 0.01
899 406 0.11
900 81 0.02
901 395 0.10
902 27 0.01
903 15 0.00
904 52 0.01
905 9 0.00
906 75 0.02
907 330 0.09
908 49 0.01
909 379 0.10
910 8 0.00
911 4 0.00
913 1 0.00
914 4 0.00
915 2 0.00
916 2 0.00
917 5 0.00
918 181 0.05
919 1 0.00
924 1 0.00
925 2 0.00
926 1 0.00
930 61 0.02
931 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCAGAGCATCATCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCAGGATCGACAGCACGC
AGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12088149 original size:26 final size:26
Alignment explanation
Indices: 12088119--12088171 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12088109 GTTGACTTAG
12088119 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12088145 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12088171 G
1 G
12088172 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12089056 original size:26 final size:26
Alignment explanation
Indices: 12089026--12089078 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12089016 GTTCACTTAG
*
12089026 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
12089052 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
12089078 G
1 G
12089079 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:12091544 original size:26 final size:26
Alignment explanation
Indices: 12091508--12091559 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12091498 TTGACTTAGC
*
12091508 CATACGGAGTTCTTTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
12091534 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
12091560 ACCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:12093341 original size:26 final size:26
Alignment explanation
Indices: 12093305--12093357 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12093295 GTTGACTTAG
12093305 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12093331 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12093357 G
1 G
12093358 ATTGTACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12093686 original size:908 final size:900
Alignment explanation
Indices: 12089767--12095476 Score: 7523
Period size: 890 Copynumber: 6.4 Consensus size: 900
12089757 GTTGGCTTAG
* * * *
12089767 GCATACAGAGTTCATTCCCAGTCTAAGAT-TGACCAGACCGAGGGTTCCGACAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
12089831 CTCGAGCATTTGTTGGTGCCGCATTTTTC-T--TC----C-CCA-GGAC--ACCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
12089885 ACCTGACCGATGGCATT-GGGTTCCGGCGATC-GGGGGGTCGGAGGGGTGTGCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
*
12089948 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12090013 ACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-GAAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAA
*
12090077 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
12090142 GTGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAA
* * *
12090206 AATTTTAAAAAATCCCGTACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
12090271 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
12090336 ATTGGCACATAGAAATATGAGGACGTGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTGT
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
12090401 GCATCCCGTCTCTCTTGCTGGCGTAGTGCCCGCCCGCCCGCGCACCCGCTCGTTTTGTCAGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCC-C-CGCCCGCTCGTTTCGTCAGTTGG
* * * *
12090466 -TTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGACCGGACCAAGGGTTG-CAGCAGCAGGA
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGA-CAGTAGGA
* * * * * * *
12090529 TCGGTAGGACACAGAGGGGGACTCGGTCGATCCCC-GACTTGCGCATCCCGCCCCTCTGGCTGGC
775 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAG-CTTGCGCATCCCACCCCTCTGGCCGGC
* * *
12090593 TGAGTAACCGCACGCACGTTTCGT-GG--G---T-----T---GA---C-TT---AG-C---
839 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
12090630 -CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCACAT-CTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGC-TGG
* * * * * * ***
12090693 GCTTGGGCATGTGTTGGCGCCACATTTTTCCTCGTCGGGGCACCATCGCCGAAGTATTACCGGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
12090758 AACCTGACCGACGACATTGGGGATCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
12090823 GCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12090888 CTCCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
12090953 TGGGGACACTTTTTTGAAACGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12091018 ATGCATGCCAACAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAA
*
12091083 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
12091148 TGCAATGAAACTTCACATGAAGGTTTAAGGGACCATTGTATTAATCTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12091213 ATTGGC-C-TACAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 ATTGGCACGT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12091276 GCGCATCCCGTCTCTCTGGCTGGCGTAGTGCTCGCCCGCCCGCGCGCTCGCTTGTTTCGTCAGTT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCC-C-CGCCCGCTCGTTTCGTCAGTT
* * * * *
12091341 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAATATCAAACCAGACCGAGGGTTG-CAGCAGTAG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGA-CAGTAG
* * ** ** *
12091405 GATCGGCAGCATGCAGAGGGGGACTCGGCCGATCCCC-GACTTGCGCATCCTGCCCCTCTGGCTG
773 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAG-CTTGCGCATCCCACCCCTCTGGCCG
* * *
12091469 GCTGAGCAACCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCTTTCCCAGTCTAA
837 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12091533 GCATACGGAGTTCATTCCCAGTCTAAGACCGGACCAGACCGAGGGTTGTGACAGAACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
12091598 CTTGGGCATGTGTTGGTGCCGCATTTTTCTTC-TCCGGGGCACCATCGCCGAAGCATTGTCGGAG
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
12091662 AACCTAACCGACGGCATTGGGGTTCCGGCGATTGGGGGGCCCGAGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
12091727 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12091792 ACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12091857 GGGGACACTTTTTTCAAATGTTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * **
12091922 TGCATGCCAACAAAAATACAAGGATCATTTCTACCAAGTTTAGGGCCAAAA-TCCCTTTTGAAAA
390 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGGCAAAACT-CCTTCCGAAAA
* ** * * *
12091986 AATTTAAAAAAATCTTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
12092051 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAAAGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12092116 ATTGGCACGTAGAAACATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGGTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12092181 GCATCCCGTCTCTCTGGCCGGCGTA--G-T-----G--CCCGCCCGCACGTTTCCTCGGTTGGCT
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCCCGCCCGCTCGTTTCGTCAGTTGGCT
* * * * *
12092236 TAGGGATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGATCG
* * * * * *
12092301 ACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCTCCCCTCTAGCCGACTGAG
778 GCAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * * **
12092366 CACCCGCACGCTCATTTCGTGGGATGACTTAGGGATACAAAGTTCATTCCCAGTC-AA
843 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12092423 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACACGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * ** ** *
12092488 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGAAACCAGCGCCGGAGCATCG-CTGGAG
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAG
* * *
12092552 AACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGAG
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
12092617 CAATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATGAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12092682 ACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12092747 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGCA-TTTTTAGCTGAATTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTT
* * *
12092811 GTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTAAAACTCCTTCCAAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAA
* * * *
12092876 ATTTTAAAAAAATCCCGAACCCTAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
454 ATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
12092941 TGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCACTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12093006 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * *
12093071 GCATTTCGTCTCTCTGGCCGACATAGTGCCTTCTCGCCCGCCCTCCCGCCCGCTCCTTTCGTCAG
648 GCATCCCGTCTCTCTGGCCGACGTAGTG----CTCGCCCG-CC-CCCGCCCGCTCGTTTCGTCAG
* ** *
12093136 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGGCCGGACCGAGGGTTGTGACAGTA
707 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTA
* * * *
12093201 GGATCGGCAGCATGTAGAGGGGGGACCCGGTCGATCCCCAGCTTGCACATCCCACCCCTCTGGCC
772 GGATCGGCAGCACGCAGA-GGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCC
* *
12093266 GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
12093331 GCATACGGAGTTCATTCCCAGTCTAAGATTGTACCAGACCAAGGGTTATGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
12093396 CTCGGGCATGT-TCTGGTGTCACATTTTTCTTCGTCGGGGTACCA-CGCCGGAGCATGGTCGGAT
66 CTCGGGCATGTGT-TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* *
12093459 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGAGGGGCCGGGGGTGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGT
* *
12093524 GCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12093589 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
12093654 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12093719 TTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAA
* ** *
12093784 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATGGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
** * **
12093849 TGCCATGAAACTTCACGTGAAGGCTTAACAGACCATTGTATGAATTTAAAAGCCATAAAAATTAC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
12093914 ACTGGCATGTAGAAATATGAAGATGTGTCTAAACGCACCTACCACCCTATCGATCCACGGCTTAC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12093979 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--CCTGCCCGTTCGTTTCGTCGGTTGGCT
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCCCGCCCGCTCGTTTCGTCAGTTGGCT
* *
12094042 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGTCCGA-GG--GT-----T--G-T-G
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGATCG
* * *
12094095 GCAGCACGCAGAGGGGGACCCGATCGATCCCTAGCTTACGCGTCCCACCCCTCTGGCCGGCTGAG
778 GCAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
** * * * * *
12094160 TGCCCGCACGCTCGTTCCGTAGGTTGACTTTGGCATACGGAGTTCATTCCCAGTGTGA
843 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12094218 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCGCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *** * *
12094283 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTACCGGGGCACCATCGTCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * ** *
12094348 ACCTGACCGGCGGCATTGAGGTTCCGGTGATCGGAGGGGTTGCGGGGGTGAGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* *
12094413 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12094478 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTATCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12094543 GGGGGCA-TTTTTTCAAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGGTGAATTTTTTT
325 GGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12094607 GTGCATGCCAA-AACAAATACAAGGATCACGTCTTCCAAGTTTGGGGGCAAAACTCCTTCTGAAA
389 GTGCATGCCAACAA-AAATACAAGGATCATGTCTACCAAGTTT-GGGGCAAAACTCCTTCCGAAA
* * *
12094671 AAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTTGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12094736 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12094801 CATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
582 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
12094866 CACATCCCGTCTCTCTGGCCG--GT-GTAG-T-----G--CCCGCCCGCTCGTTTCATCAGTTGG
647 CGCATCCCGTCTCTCTGGCCGACGTAGT-GCTCGCCCGCCCCCGCCCGCTCGTTTCGTCAGTTGG
* * * ** * *
12094920 CTTAGGCATACGAAGTTCATTCCCAATCTAAGATTAGACCAAACTGAGGGTTGTGACAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGAT
* * * * * * ** *
12094985 TGCCAACACGCAGAGGGGGACCCGATCGATCCCCGGGTAGCGCATCCCGGCCCTCTGGTCGGCTG
776 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTG
* * *
12095050 AGCACCCGCACGCTCATTTCGTGAGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
841 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12095110 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* *
12095175 CTTGGGCATGTGTTGGTGCCGCATTTTT-TT--TC---G-----TCG--GG-GCATCGCCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
12095226 ACCTGACCAATGGCATTGGGGTTTCGGCGATCGGGGGGGCCGAGAGGGGTGAGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-G-GGGGTGTGCGCACATGATGT
* *
12095291 GCGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12095356 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12095421 TGGGGACACTTTTTTCATATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTG
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
12095477 GTGCCACATC
Statistics
Matches: 4277, Mismatches: 466, Indels: 192
0.87 0.09 0.04
Matches are distributed among these distances:
862 28 0.01
863 53 0.01
864 1 0.00
866 2 0.00
870 1 0.00
871 3 0.00
872 2 0.00
874 24 0.01
875 13 0.00
876 218 0.05
877 289 0.07
878 183 0.04
879 189 0.04
880 68 0.02
881 6 0.00
883 2 0.00
884 1 0.00
885 2 0.00
886 4 0.00
887 200 0.05
888 507 0.12
889 32 0.01
890 585 0.14
891 178 0.04
892 194 0.05
893 1 0.00
895 2 0.00
896 2 0.00
897 3 0.00
899 4 0.00
900 66 0.02
901 1 0.00
902 2 0.00
903 452 0.11
904 163 0.04
905 1 0.00
906 88 0.02
907 155 0.04
908 531 0.12
909 21 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGATCGGCA
GCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12095119 original size:26 final size:26
Alignment explanation
Indices: 12095081--12095136 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12095071 TGAGTTGACT
12095081 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
12095107 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12095133 TAAG
1 TAAG
12095137 ATCGGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:12095747 original size:301 final size:301
Alignment explanation
Indices: 12095205--12095777 Score: 923
Period size: 301 Copynumber: 1.9 Consensus size: 301
12095195 GCATTTTTTT
* * * * * *
12095205 TCGTCGGGGCATCGCCGGAGAACCTGACCAATGGCATTGGGGTTTCGGCGATCGGGGGGGCCGAG
1 TCGTCGGAGCATCGCCGGAGAACCTGACCAACGGCATTGGAGTTCCGACGATCGGGGGGGCCAAG
* *
12095270 AGGGGTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCC
66 AGGGGTGAGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
12095335 TCATCAATCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
131 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCAG
* *
12095400 TAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCATATGGTCACAAAATCTTGTACACTTCC
196 TAGCCATTAAAACGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCC
12095465 AGTTTTTAGCTGGTGCCACATCTTTCTTCACCGGGGCACCA
261 AGTTTTTAGCTGGTGCCACATCTTTCTTCACCGGGGCACCA
* *** *
12095506 TCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGAGTTCCGACGATCGGGGGGGTCAAG
1 TCGTCGGAGCATCGCCGGAGAACCTGACCAACGGCATTGGAGTTCCGACGATCGGGGGGGCCAAG
* * *
12095571 GGGGGTTTA-CGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCC
66 AGGGG-TGAGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCC
12095635 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCA
130 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCA
* *
12095700 GTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
195 GTAGCCATTAAAACGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
12095765 GAGTTTTTAGCTG
260 CAGTTTTTAGCTG
12095778 AATTTTTTTG
Statistics
Matches: 248, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
301 246 0.99
302 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (301 bp):
TCGTCGGAGCATCGCCGGAGAACCTGACCAACGGCATTGGAGTTCCGACGATCGGGGGGGCCAAG
AGGGGTGAGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCAG
TAGCCATTAAAACGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCC
AGTTTTTAGCTGGTGCCACATCTTTCTTCACCGGGGCACCA
Done.