Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 74 of 190
Found at i:12096315 original size:26 final size:26
Alignment explanation
Indices: 12096264--12096316 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12096254 GTTGACTTAG
*
12096264 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
*
12096290 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
12096316 G
1 G
12096317 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:12097206 original size:26 final size:26
Alignment explanation
Indices: 12097176--12097228 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12097166 GTTGACTTAG
12097176 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12097202 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12097228 G
1 G
12097229 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12098023 original size:903 final size:900
Alignment explanation
Indices: 12095473--12098490 Score: 4391
Period size: 903 Copynumber: 3.3 Consensus size: 900
12095463 CCAGTTTTTA
* * *
12095473 GCTGGTGCCACATCTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGC
1 GCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC-GAC
* ** * * * *
12095538 GGCATTGGAGTTCCGACGATCGGGGGGGTCAAGGGGGGTTTACGCACATGATGTGTGATGGGTGC
65 GGCATTGGGGTTCCGACGATCGGAAGGG-C-TGGGGGGTGTGCGCACATGATGTATGATGGGTGC
*
12095603 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
128 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
12095668 AGAGCATTTGAGATTTTACAGGTCTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTT
193 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
12095733 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
258 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
* * * * *
12095798 AAAAAATACAAGGATCATGTCTACCATGTTTGGGCCCAAAACTCCTTCCGAATAAATTTTAAAAA
323 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
*
12095863 ATCCCT-AACCGTAAAAAGTTTCAAAAAACGTGAAAAATAGAAAACGAGTTA-TCTTGCCATGAA
388 AT-CCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG-TAGTCTTGCCATGAA
*
12095926 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAGTGGCACG
451 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
12095991 TAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCCCATCCTGT
516 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
12096056 CTCTCCGGCCGACGTAGTGCCTGCCTGCCCGCTCGCCCG-TTCGTTTCGTCGGTTGGCTTAGCCA
581 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTT-GTTTCGTCAGTTGGCTTAGGCA
* * *
12096120 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTT-A-T-----GA---TAGCACG
645 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTCAGTAGCAGGATGGTAGCACG
* ** * * * *
12096175 CAGAGAGGGACCCGGTCGATCCTTGGCTTGTGCATCCTGCCCCTCTGGCCGGTTGAGTGCCCGCA
710 CAGAGGGGGACCCGAACGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
12096240 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCAT
775 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** * * * * *
12096305 TCCCAATCTAAGATCGGACCGGACCAAGGGTTACAACAGCACATGCTGGGCTCGCGCATGT
840 TCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGACAGCCCATGCTGGGCTCGGGCATGT
* * *
12096366 GCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGTAGCATCGCCAGAGAACCTGACCAGC
1 GCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACGA-C
* * *
12096431 GGCATTGCGGTTCCGACGATC-GAGGGGGCCGGGGGGTGTGTACGCACATGATGTGTGATGGGTG
65 GGCATTGGGGTTCCGACGATCGGA-AGGGCTGGGGGGTGTG--CGCACATGA--TGT-A----TG
*
12096495 CTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
120 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
12096560 CCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
185 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * * *
12096625 CGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTG
250 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
12096690 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
315 CAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
12096755 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAATGAGTAGTCTTGC
380 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGC
* * *
12096820 CATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGATTTTGCAAGCCATAAAAATGGCATT
445 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
12096885 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCTACGGCTTCCGCT
510 GGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * *
12096950 TCTCGTCTCTCTGGTTGACATAGTGCCCGCCCGCCCGCCCGCCCGCTTCTTTCGTCAGTTGGCTT
575 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTTGTTTCGTCAGTTGGCTT
* * * * *
12097015 AGGGATACAGAGTTCATTCCCAGTCTAAGATCCA-ACC-AGACCGAGGGGTACGGCAGCAGGATT
640 AGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCGA-ACCGA-GGGTTCAGTAGCAGGA-T
* * * * *
12097078 GGCAGCACGCAGTGGGGGACCCGACCGATCCCCAGG-TTGCGCATCCTGCCCCTCTGGCCAGCTG
701 GGTAGCACGCAGAGGGGGACCCGAACGAT-CCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
*
12097142 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA
765 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
*
12097207 CGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCCCATGCTGGGCTCGG
830 CGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGACAGCCCATGCTGGGCTCGG
12097272 GCATGT
895 GCATGT
** ** * * *
12097278 GCTGGTGCCGTATTTTTCTTCGTCGGTGCACCATCGTCGGAGCGTC-CTCGGAGAACCTGTTCGA
1 GCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGC-CGGAGAACCTG-ACGA
*
12097342 CGGCATTGGGGTTCCGACGATCGGAAGGG-TGGGGGGTGTGCGCACATGATGTACGATGGGTGCT
64 CGGCATTGGGGTTCCGACGATCGGAAGGGCTGGGGGGTGTGCGCACATGATGTATGATGGGTGCT
* *
12097406 GGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAT
129 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
12097471 GAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
194 GAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
*
12097536 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCAAGCCAAC
259 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAC
* *
12097601 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAATAAAA
324 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA-AAAA
* * *
12097666 ATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
388 ATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAAC
*
12097731 TTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
453 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * * *
12097796 GAAATATAAATATGTGCCTAAACCCACCTGCCACCCTATCTATCCACGGCTTGCGCATCCCGTCT
518 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
12097861 CTCTGGCCGACGTAGTGCCCGCCCGCACGCCCGTCTGCTTGTTTCGTCAGTTGGCTTAGGCATAC
583 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATAC
*
12097926 GGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGTAGCAGGATCGGTAGCACAC
648 GGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTT-CAGTAGCAGGAT-GGTAGCACGC
* ** *
12097991 AGAGGGGGCCCCGAACGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCAC
711 AGAGGGGGACCCGAACGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
12098056 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
776 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
12098121 CCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGACAGCCCATGCTGGGCTCGGGCATGT
841 CCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGACAGCCCATGCTGGGCTCGGGCATGT
** * ** * *
12098181 GCTGGTGCCACATTTTTCTTCGTCGGCGCACCATCACCGGAGCGTCGCCGGAGAACTTGATCGAC
1 GCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA-CGAC
12098246 GGCATTGGGGTTCCGACGATCGGAAGGGCTGGGGGGTGTGCGCACATGATGTATGATGGGTGCTG
65 GGCATTGGGGTTCCGACGATCGGAAGGGCTGGGGGGTGTGCGCACATGATGTATGATGGGTGCTG
* * *
12098311 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTTGAGAACTCACACCCCCTTAATG
130 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
12098376 AGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGAACACTTTT
195 AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
* *
12098441 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTATCTGAATTTTT
260 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
12098491 CAAATGGTCA
Statistics
Matches: 1906, Mismatches: 178, Indels: 71
0.88 0.08 0.03
Matches are distributed among these distances:
891 8 0.00
892 2 0.00
893 90 0.05
895 3 0.00
899 4 0.00
900 505 0.26
901 8 0.00
902 262 0.14
903 537 0.28
904 209 0.11
906 1 0.00
907 3 0.00
908 2 0.00
909 9 0.00
911 11 0.01
912 244 0.13
913 8 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACGACG
GCATTGGGGTTCCGACGATCGGAAGGGCTGGGGGGTGTGCGCACATGATGTATGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTCAGTAGCAGGATGGTAGCACGCAGAGG
GGGACCCGAACGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGGATTGGACCGAGGGTTGCGACAGCCCATGCTGGGCTCGGGCATGT
Found at i:12098109 original size:26 final size:26
Alignment explanation
Indices: 12098079--12098131 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12098069 GTTGACTTAG
*
12098079 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12098105 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12098131 G
1 G
12098132 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12100235 original size:26 final size:26
Alignment explanation
Indices: 12100199--12100251 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12100189 GTTGACTTAG
12100199 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12100225 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12100251 G
1 G
12100252 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12101120 original size:26 final size:26
Alignment explanation
Indices: 12101090--12101142 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12101080 GTTGACTTAG
*
12101090 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGATCATTCCCAGTCTAA
**
12101116 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACAAAGATCATTCCCAGTCTAA
12101142 G
1 G
12101143 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGATCATTCCCAGTCTAA
Found at i:12101162 original size:891 final size:893
Alignment explanation
Indices: 12099333--12108183 Score: 9542
Period size: 891 Copynumber: 10.0 Consensus size: 893
12099323 GTTGACTTAG
* * * * *
12099333 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGAACAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAG-TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
12099398 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCAAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ***
12099463 ACCTGACCGACGGCATTGGCGTTCCG--G-T------GATTGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
12099519 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12099584 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
12099649 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
12099714 GCGTGCCAAAAAAAATACAAGGATCACGTCTACCATGTTT-GGGCCAAAACTCCTTTC-AAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * * *
12099777 ATTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAAATAAAAAATGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
12099842 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * ** *
12099907 TGGCACGTAGAAATATGAAGATGTGCCTAAATGCACCTACCACCCTATCGATCCACGACTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
12099972 ATCCCGTCTCTCTGGCCGGCGTAGTCCTCGCCCGTCAGCCCGCCCGCTCGTTTCATCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAG---T-G--C--C-GCCCGCCCGCTCCTTTCGTCGGTTGGCT
* ** * *
12100037 TAGGCATACGGAGTTCATTACCAGTCTAAGATTGGACCGGACTGAGCGTTGCAGCAGCAGGATCG
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGGATCG
* ** * * ** *
12100102 GTAGCTTGTAGAGGGGGACCC-GATCGATCCCCGGCTTGCGTATCCTGCCCCTTTGGCCGGCTGA
771 GCAGCACGCAGAGGGGGACCCAG-TCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
12100166 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12100225 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTACGGTAGCACTTGCTGG
1 GCATACGGAG-TCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
12100289 GCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* ** * *
12100354 AATCTGACCGACGGCATTGGGGTTCCGTTGATCGGGGTGGCC-GGGGTTGTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
12100418 CGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12100483 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12100548 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAG-TTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
12100612 TGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
12100677 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12100742 GCCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATGGC
519 GCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12100807 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
12100872 GCATCCCGTCTCTTTGGCTGGCGTAGTG-C-CCCGCCCGCTCCTTTCGTCGGTTGGCTTAGGCAT
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCTCCTTTCGTCGGTTGGCTTAGGCAT
* ** *
12100935 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCAGTAGCAGGATCGACAGCAC
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGGATCGGCAGCAC
* * * * * *
12101000 GCAGAAGGGGACCTAGCCGATCCCCGGCTTGCACATCCCTCCCCTCTGGCTGGCTGAGCACCCGC
778 GCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGC
* **
12101065 ACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12101116 GCATACGGAGATCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAG-TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
12101181 CTTGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
12101246 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACAAGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
12101311 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12101376 CCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12101441 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
**
12101506 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTACCAAAACTCCTTCC-AAAAAT
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-
** * **
12101570 ATTTTAAAAAATCTGGAACCTTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
12101635 ACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCTATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12101700 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
12101765 TATCCCGTCTCTTTGGCCACGTAGTGCTAGACCGCCCGCCCGCCCGCTCATTTCATCGGTTGACT
649 CATCCCGTCTCTCTGG-C-CG--GCG-TAG--TG-CCGCCCGCCCGCTCCTTTCGTCGGTTGGCT
* * * ** * *
12101830 TAGGCATATGGAGTTCATTACCAGTCTAAGATCACACCAAACTGAGGGTTGCGGTAGCAGGATCA
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGGATCG
** * * * *
12101895 GCAGCACGCAGAGGGGGACCC--TACGGATCCCTAGCTTGTGCATCTCGCCCTTCTGGCCGG-TG
771 GCAGCACGCAGAGGGGGACCCAGT-C-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
*
12101957 AGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
834 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12102013 -C-T---GAG--ATT----G----A-A-C----CGGACCAAGGGTTACGGTAGCACGTACTAGGC
1 GCATACGGAGTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** * * **
12102057 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATTGTCGGAGCAACATCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * *
12102122 CCTGATCGACGGCATTGAGGTTCTGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
** *
12102186 ATGGGTGCTATTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
12102251 CCCTTTAAAGAGTATTTGAGATTTTACAGGTTTGCTTCTAGTAGCTATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
12102316 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTATTATG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** *
12102381 CATGCCAACAAAAATACAAGGATCACGTCTACCCTGTTTGGGGCCAGAACTCCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** *
12102446 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCATCTTGC
456 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
12102511 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
12102576 GGAATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTA
586 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
12102641 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCACTCGTTTCATCGATTGGCTTAGGTATAC
651 TCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCTCCTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * *
12102706 GGAGTTCATTCCCTGCCTAAGATCAGACCAGAATGAGGGTT--ATGACAGCAAGATCGACAGTAC
715 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCA-G-TAGCAGGATCGGCAGCAC
** * * * * *
12102769 ATAGAGGGGGACCCAATCGATCCTCGGCTTGCACAACCCACCCCTCTGGCCGGCTGAGCGCCCGC
778 GCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGC
* *
12102834 ACGCTCGTTTCGTGCGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
12102885 GGATACGAAGTTCATTCCCAATCTAGGATCAGATCGGACCGAAGGTTGCGTCAGCACATGCTGGG
1 GCATACGGAG-TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12102950 CTTGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
**
12103015 ACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
** *
12103080 CGATGATTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12103145 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12103210 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT-
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12103273 T---T-----C------AC----AT---G----CCAAGTCTGGGGCCAAATCTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
12103313 ATTTTAAAAAATCTCGAACCGTAAAAA-TTTTAAAAAT-AGTGAAAAATAGAAAACAATTCGTCC
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCT
* *
12103376 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATCAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** * * * *
12103441 ATTGGCACATAGACATATGAAGATGTGCCTAAATCCACCCACCACCCGATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** *
12103506 GCATCCCATCTCTCTGGCTGATGTAGTGCCCGCCTGCCCGCTCACCTGCTCATTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGT----GCC-GCCCG--C-CC-GCTCCTTTCGTCGGTTGG
* *
12103571 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACAGTAGCAGGAT
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGGAT
* * * * * *
12103636 CGGTAGCACGTAGAGGGGGACCC-GATCAATCCCC-GCTTGTGCATCTCGCCCCTCTGGCCGGCT
769 CGGCAGCACGCAGAGGGGGACCCAG-TCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
* * ** * * *
12103699 GAGCGCCGGCATTCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
833 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
12103760 G-AT-C--AG--------A--C------C--A---GACCGAGGGTTGTGGCAGCACATGCTGGGC
1 GCATACGGAGTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
12103800 TCGGGCATGTGCTGGTGCCGCACTTTTCTTC-ACGGGGGCACTATCGTCGGAGCATCGCCAGAGA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
12103864 ACCTGACC-AGCGGAATTGGGGTTCCGACGATC----GGG--GGGGAGTGTGTGCACATGATGTG
130 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
12103922 CAATGGGTTCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12103987 ACCCCCTTAAAGGGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
12104052 GGGGACACTTTTTTGAAATGGTCACAATATATTGTACACTTCGAGTTTTTAGCTGAATTTCTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12104117 GGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* **
12104182 ATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12104247 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12104312 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATAGCGATCCACGGCTTGTG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
12104377 TATCACGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGTTCGTTTCGTCGGTTCGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTG-CCG--C-CC-GCCCG--C--TCCTTTCGTCGGTTGGC
* * * * * * *
12104442 TTAGGCATACGGAGTTCACTCCTACTCTAAGATCACACTGGACCGAGGGTTAC-GATAGCAGGAT
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAG-TAGCAGGAT
* * * * *
12104506 CGGCAGCATGCAGAGGGGGACCCAGTCGATCCTCGGCTTGCGCATCCCGCCGCTCTGGCTGGCTG
769 CGGCAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
* *
12104571 AGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12104631 GCATACGGAGCTCATTCCCAGTCTAAGATTGGACCGAACCAAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAG-TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
12104696 CTTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGTGCACCATCACCGGAGCATCACCGGAG
65 C-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
12104760 AACCTTACC-AGCGGCATTAGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
129 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
*
12104824 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
12104889 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
12104954 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGATTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * ** *** *
12105019 TGTGCACGCCAAAAAAAATACAAGGATCACATCTACCTTGTTTGGGATGAAAACTCCTTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
12105084 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
12105149 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12105214 CATTGGCACT-CAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCATGGCTT
582 CATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12105278 GCGCATCCCGTCTCTCTGGCCGACATAGCGCCCGCCCGCCCGTTTGCCCGCTCGTTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTA--G--TG-CCGCCC----GCCCGCTCCTTTCGTCGGTT
* * * * * *
12105343 GGCTTAGGCATACGAAGTTCTTTCCCAGTCTCAGATCAGACCGAACCGAGGGTTGCGGTAGCAGG
702 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGG
** * * * ** * * *
12105408 ATCAACAGCATGCAGAGAGGGACCC-GACCGATCCCCATCTTACGCATCCTACCCCTCTGGCCGA
767 ATCGGCAGCACGCAGAGGGGGACCCAG-TCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGG
* ** *** * * *
12105472 CTGAG----CGC-C-CT--TTT-GTGCG-TGCCAACAAAAAAACAAGGA--TCACGTCTACCAAG
831 CTGAGCACCCGCACGCTCGTTTCGTGGGTTG---ACTTAGGCATACGGAGTTCA--T-T-CCCAG
* *
12105525 TTTAGG
889 TCTA-A
* * * ** * * * * * *** ** * * * *
12105531 GCCA-A--AACTCCTTCTGAAAAAATTTTAAAAAATATTGAATC--ATAAAAAGTTAC-GTATCC
1 G-CATACGGAGTCATTC-----CCAGTCT----AAGATCGGATCGGACCGAGGGTTGCGGCAGCA
* * * * ** ** *
12105590 CGTCTCTTTGGC-CGGTGTA-GTGCCCGTCCGCCTGC-TCGTT-TT-GTCGGTTGGCTTAGGCAT
56 CAT-GC-TGGGCTCGG-GCATGTGCTGGT--GCC-GCATTTTTCTTCGTCGG--GGC--A-CCAT
* * * * * * * **
12105650 --ACGAAGTTCATTC-CCAGTCTAAAATCAGACCGGACCG-A---GGGTT-----G-T---GGCA
110 CGTCGGAG--CA-TCGCC-G--GAGAACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGGGG
* *** * * * ** * * * * **
12105699 GCAGGATCG-GT-AGCACATAGA-GGGGGA-CCGTACTGATCCTCGG--C-T-TA-T-GCATCCT
168 GCCGGGGGGTGTGCGCACAT-GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * * ** *** * * ***
12105754 ACCCCTCTGGTC-GA-CT-GAGCACCCACACGCTCATTTCGTGGGTTGATTT-AG-GCATACAGG
232 ATCCCTC--ATCAAACCTCGAGAACTCACAC-C-CCCTTAAAGAG--CATTTGAGATTTTACAGG
* *
12105814 TTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGCACACTTTTTTCAAATGGTCACAAAATCT
291 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* ** *
12105879 TGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGATAACAAAAATACAAGGATCATGTCT
356 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * ** *
12105944 ACCAAGTTTTGGGCCAAAACTCCTTACAAAAAAATTTTAAAAAATCCCAAACCACAAAATGTTTC
421 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* * * *
12106009 AAAAATCGTGAAAAATAAAAAACGAATCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGAC
486 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
12106074 CATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATGTAGAAATATGAAGATGTGCCTAAA
551 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
*
12106139 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGCGTAGTGCCCGC
616 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGC
* *
12106204 CCGCTCGTCTGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGA
680 CCGC-C--C-GCT--C-C-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * ** * * * *
12106269 TCAGACCAGACCGAGGGTTG-TGACAGTAGGATCGATAGCACGTAGACGGTGACCCGGTCGATCC
737 TCAGACCGGACTGAGGGTTGCAG-TAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGTCGATCC
* * **
12106333 CCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTT
801 CCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
* *
12106398 AGGCATACGAAGTTCATTCCTAGTCTAA
866 AGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12106426 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCATCACATGCTGGG
1 GCATACGGAG-TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12106491 CTCGAGCATGTGCT-GTGCCCCATTTTTCTTCGACGGGGCACCATCGTC-GA--A----C----A
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
12106544 ACCTTACTGACGGTAATGGGGTTCCGACGATCGGGGGCGCCGGGGGGTGCGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
** ** * * *
12106609 GATGGGCACCAGTACTTAGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12106674 CCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12106739 GGAACACCTTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12106803 TGCATGCCAACACAAATAAAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * ** * *
12106868 ATTTTAAAAAATCTCAAACCGCAAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
12106933 GCCATTAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12106998 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCATCTACCACTCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
12107063 CATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGATTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGT----G-CCG--C--CCGCCCGCTCCTTTCGTCGGTTGGC
** * * * **
12107128 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAAGGTTGCA-TCAGTGGGAT
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGT-AGCAGGAT
* * * * * *
12107192 CGGCAGCATGCAGAGGGGGACCC-GACCGATCCCCGGCCTGCGCATGCCACCCCTCTGGTCGACT
769 CGGCAGCACGCAGAGGGGGACCCAG-TCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
* * ** *
12107256 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAAAGAGTTCATTCCCAATCTAA
833 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
12107317 G-AT-C-G-G--------A--C------C--A--GG-CCGAGGGTTGCAGCAGCACATGCTGGGC
1 GCATACGGAGTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* *
12107357 TCGAGCATGTGCTGGTGCCACA--TTT-TTC-T----------TCGTCGGAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
** * ** *
12107408 CCTGATTGATGGCATTGGGGTTCCGGTGATCGGGGGGGCTGAGGGGG-GTGCGCACATGATGTGC
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGC
*
12107472 GATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12107537 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATA
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12107602 GGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAA-TTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
12107666 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCTTTTCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
12107731 TTTAAAAAAATCCCAAACCGTTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * * *
12107796 CCATGAAACTTCATGTGAAGG-TTAAGGGACCATTCTATGAATTTAGAAGCCATAAAATTGCCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
12107860 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
12107925 AACCCGTCTCTCTGGCCGGCGTAGTACTCGTCGACCCGCCCG-TCCGTTTGTTTTGTCGGTTGGC
650 ATCCCGTCTCTCTGGCCGGCGTAG---T-GCCG-CCCGCCCGCTCC-----TTTCGTCGGTTGGC
** * * * *
12107989 TTAGGCATACAAAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATT
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGGATC
* ** * * * *
12108054 GGTAGCACGCAGAGGGGGACCCAACCGAATCCCCAGCTTGTGCATCCCACCCCTCTGGCCGGTTA
770 GGCAGCACGCAGAGGGGGACCCAGTCG-ATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
* * * * *
12108119 AACACCCGCCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
834 AGCA----CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
12108183 G
1 G
12108184 ATCAGACCAG
Statistics
Matches: 6743, Mismatches: 900, Indels: 658
0.81 0.11 0.08
Matches are distributed among these distances:
842 192 0.03
843 7 0.00
845 3 0.00
847 1 0.00
848 2 0.00
849 107 0.02
852 6 0.00
853 2 0.00
854 1 0.00
855 1 0.00
856 2 0.00
857 7 0.00
858 2 0.00
859 2 0.00
860 3 0.00
861 207 0.03
862 177 0.03
863 215 0.03
864 9 0.00
865 40 0.01
866 65 0.01
867 124 0.02
868 227 0.03
869 113 0.02
870 275 0.04
871 94 0.01
872 9 0.00
873 4 0.00
874 471 0.07
875 198 0.03
876 96 0.01
877 3 0.00
878 3 0.00
879 2 0.00
880 7 0.00
881 1 0.00
882 1 0.00
883 9 0.00
884 5 0.00
885 14 0.00
886 12 0.00
887 14 0.00
888 11 0.00
889 30 0.00
890 38 0.01
891 1356 0.20
892 509 0.08
893 155 0.02
894 116 0.02
895 36 0.01
896 221 0.03
897 136 0.02
898 26 0.00
899 76 0.01
900 221 0.03
901 127 0.02
902 268 0.04
903 8 0.00
904 601 0.09
905 12 0.00
906 19 0.00
907 6 0.00
908 12 0.00
909 12 0.00
910 3 0.00
912 8 0.00
913 2 0.00
914 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCTCCTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGGATCGGCAGCACGCA
GAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12102897 original size:26 final size:25
Alignment explanation
Indices: 12102856--12102913 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
12102846 TGCGTTGACT
* *
12102856 TAGGCATACGTAGTTCATTCCCAGTC
1 TAGG-ATACGAAGTTCATTCCCAATC
12102882 TAAGGATACGAAGTTCATTCCCAATC
1 T-AGGATACGAAGTTCATTCCCAATC
12102908 TAGGAT
1 TAGGAT
12102914 CAGATCGGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 21 0.72
27 3 0.10
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (25 bp):
TAGGATACGAAGTTCATTCCCAATC
Found at i:12104635 original size:26 final size:26
Alignment explanation
Indices: 12104605--12104657 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12104595 GTTGACTTAG
*
12104605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
12104631 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
12104657 G
1 G
12104658 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:12106437 original size:26 final size:26
Alignment explanation
Indices: 12106400--12106452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12106390 GTTGACTTAG
* *
12106400 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
12106426 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12106452 G
1 G
12106453 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:12109108 original size:26 final size:26
Alignment explanation
Indices: 12109079--12109131 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12109069 CCAGTCCGAT
* *
12109079 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12109105 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12109131 C
1 C
12109132 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12110014 original size:26 final size:26
Alignment explanation
Indices: 12109985--12110037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12109975 CCGGTCTGAT
* *
12109985 CTTATACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGTATG
12110011 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGTATG
12110037 C
1 C
12110038 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCTGTATG
Found at i:12111772 original size:26 final size:26
Alignment explanation
Indices: 12111743--12111795 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12111733 CCAGTCCGAT
*
12111743 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12111769 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12111795 C
1 C
12111796 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12112677 original size:26 final size:26
Alignment explanation
Indices: 12112648--12112700 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12112638 CCGGTCCGAT
*
12112648 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
12112674 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
12112700 C
1 C
12112701 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:12113370 original size:901 final size:900
Alignment explanation
Indices: 12108301--12118892 Score: 13559
Period size: 901 Copynumber: 11.9 Consensus size: 900
12108291 GATCGATGGC
* * * * * * * *
12108301 ATGCGTAAGTCGGGGATCGATTGGGTCCCCCTTTGCGTGCTACCGATCCTACTACTACAACCCT-
1 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC
* ** * * * *
12108365 TGATCTAGTCTAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGATGAACCGAG-T
66 AG-TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAG
* * **
12108429 G-GGCGGGC--G--GGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGTTGTGGATCGATAGGG
130 GCGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
12108489 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAGTTTTATGGCTTGTAAA
195 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
*
12108554 TTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTT
260 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTT
*
12108619 TCACGATTTTCAAAATTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
325 TCACGATTTTCAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* **
12108684 CAAGCTTGGTAGACATGATCCTTGTATTTTTGTTCACATGCACAAAAAAATTCAGCTAAAAACTC
390 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
12108749 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
455 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
12108814 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTCTGATGAG
520 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
12108879 GGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCC
585 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *
12108944 CGACCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGACGA---T---G-G-T-
650 CG-CCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATA
* * * * * *
12109000 G-ACCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCTGCAACCC
714 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCC
* * *
12109064 TCGATCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTA
779 TCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTA
* ** * *
12109129 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCTTGATGGGCGGG
844 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
* * * * * * * * * *
12109186 ATGCGTAAGACGAGGATTGGTTGGGTCCTCCTCTGCGTGCTGCCGATCCTGCTGCTACAACTCTT
1 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC
** * * * * *
12109251 AGTTTGGTCTGATCTTAGATTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGT
66 AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAG-
* * ** *
12109316 GCGGGCGGGCGGGCAGGCGGGCAC-ACTACCGGCCAGAGAGATTGGATGCGCAAGCTGTGGATCG
130 GC-GGCGGGCGGGCA----GGCACTAC-GCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * *
12109380 ATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGAGCCAGTGCCATTTTTATGGCT
189 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
* * *
12109445 TGTAAATTCATCCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACGACTTGTTTTC
254 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTC
* ** * *
12109510 TATTTTTCACGATTTTTGAAACCTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGTAGTT
319 TATTTTTCACGA-TTTTCAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * *
12109575 TTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTT-TTGGCATGCAAAAAAAAATTCAGCCA
383 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
12109639 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAA
448 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
12109704 TGGCGACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTT
513 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
12109769 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAAT-GCAGATCATGTGCGCA
578 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCA
* ** * * *
12109833 CACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCG-CTGGTCAGGTTTTTCAACGATGCTC
642 CACCCCCCCGCCCCCCCGATCACCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTC
* * * * * *
12109897 TGGTGTTGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
706 CGGCGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* * * * *
12109962 CGTAACCCTCGGTCCGGTCTGATCTTATACTGGGAATGAACTCTGTATGCTTAGACTGGGAAAGA
771 CGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
12110027 ACTCTGTATGCCTAAGTCAACCCACAAAACGAACGTGGGGGCACTCGGCCGGCCAGAGGGGTGGG
836 ACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
* * * *
12110092 ATACGCAAGCCGGGGATC-GACTGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCT
1 ATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCT
* * *
12110156 CAGTCCGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCG
65 CAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-A
* * * * *
12110221 GGCGGACGGGCGGGCGGGCTCTACGTCGACCAGACAGACGGGATGCGCAAGCCGTGGATTGATAG
129 GGCGG-CGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
12110286 GGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTACGTGCCAATGCCATTTTTATAGCTTGTA
193 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
12110351 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATT
258 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATT
** * ** * * * *
12110416 TTTCATAATTTTTGAAGCTTTTT-CGGCTCCGA-ATGTTTTAAAATTATTTCGAAAGGAGTTTTG
323 TTTCACGA-TTTTCAAAATTTTTGCGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * * *
12110479 GCCCCAAAC-TCGTCAAACATGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAACTGAA
386 GCCCCAAACTTGGT-AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
**
12110543 AACTCCTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
450 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * ** *
12110608 GCTAATGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGATGTGTGAGTTCTTGAGGTTTG
515 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
12110673 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCACATCATGTGTGCACAC
580 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * **
12110738 CCCCCCGACCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAGGCTCCTAC
645 CCCCCCGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGC
* * **
12110803 GATAGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCAAAGCCCAGCATGTGCTACCGTA
710 GATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTA
*
12110868 A-CC-C--T-C-G---G---TT---C-------G-AC-CCG-AT-CCTAGACTGGGAATGAACTC
775 ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
12110907 TATATGCCTAAGGCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
840 TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
** * * * ** ***
12110968 ATATGCAAGCCAGGGATCGATCGGGTCCCCCTCTGTGTGCTACTAATCCTGCTGTTGCAACCCTC
1 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC
* * ** **
12111033 AATTCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--GA--
66 AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGG
* * * *
12111094 --GTGGGCGGGCAGGCACTACGCCGATC-GAGAGACGAGATACGCAAGCCGTGGATCGATAGGGT
131 CGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * *
12111156 GGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCAGTTTTATGGCTTGTAAAT
196 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
12111221 TCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTT
261 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTT
12111286 CACGATTTTCAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
326 CACGATTTTCAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * *
12111351 AAGCTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACACG
391 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
12111416 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
456 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
12111481 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
521 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
12111546 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
586 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * *
12111610 GACCCCCCGATCACCGGAACCCCAATGTCGCCGGTCAAGTTCTCCGACGA---T---G-G-T-G-
651 GCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATAGT
* * * * * * * *
12111665 ACCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAACACAGCATGTGCTGCTGCAATCCTC
716 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTC
* * *
12111730 GGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
781 GATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
* *
12111795 CCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
846 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
* * * * ** * * *
12111850 ATGCGCAAGACGAGGATTGGCCGGGTCCTTCTCTGCGTGCTGCCGATCCTGCTGCTACAACTCTC
1 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC
** * * * *
12111915 AGTTTGGTCTGATCTTAGATTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGT
66 AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAG-
* * * ** *
12111980 GCGGGCGGGCGGGCAGGCGGGCGCTACACCGGCCAGAGAGATTGGATGCGCAAGCTGTGGATCGA
130 GC-GGCGGGCGGGCA----GGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
12112045 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGAGCCAGTGCCATTTTTATGGCTT
190 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
* * *
12112110 GTAAATTCATCCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCT
255 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCT
* ** * * * * *
12112175 ATTTTTCACGATTTTTGAAACCTTTTGTGGTTTGAGATTTTTTAAACTTTTTTTGGAAGTAGTTT
320 ATTTTTCACGA-TTTTCAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
*
12112240 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAA
384 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
12112304 AAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCGGACACTTTAAT
449 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
12112368 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGATTT
514 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
12112433 GATGAGGGATAGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAAT-GCAGATCATGTGCGCA
579 GATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCA
* * * *
12112497 CA-CCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCG-CTGGTCAGGTTTTTCGACGATGCTC
642 CACCCCCCCGCCCCCCCGATCACCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTC
* * *
12112560 CGGTGTTGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
706 CGGCGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
*
12112625 CGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGA
771 CGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
12112690 ACTCTGTATGCCTAAGTCAACCCATGAAACGAACGTGGGGGCACTCGGCCGGCCAGAGGGGTGGG
836 ACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
** * * *
12112755 ATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCTTGCTGCCACAGCCCTC
1 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC
* * * *
12112820 GGTCCGGTCTAATCTTAGGCTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGTAG
66 AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-AG
* * * * * * *
12112885 GCGGATGGGCGGGCAGGCTCTACGTCGACCAGACAGACGGGATGTGCAAGTCGTGGATTGATAGG
130 GCGG-CGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
12112950 GTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
194 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
12113015 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTT
259 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTT
12113080 TTCACGATTTTCAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
324 TTCACGATTTTCAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
12113145 CCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACA
389 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
12113210 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
454 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
12113275 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
519 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
12113340 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
584 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* *
12113405 CCGACCCCCCCGATCACCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGAT
649 CCG-CCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGAT
** ** *
12113470 AGTGCCCCGACGAAGAAAAATGCAACACCAGCACATGCCAAAGCCCAGCATGTGCTACTGTAA--
713 AGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACC
* **
12113533 --C---CC--TCCG---TT---C-------G-AC-CCG-AT-CCTAGACTGGGAATGAACTCCAT
778 CTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGT
* * * * *
12113574 ATGCCTAAGGCAACCCACGAAATGAGCGTGCAGGAGCTCAACCGGCCAGAGGGGTGGG
843 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
** * * ** * *
12113632 ATATGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCATGCTACTAATCCTGCTGTCGCAACCCTC
1 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC
* * * **
12113697 AATTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--GA--
66 AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGG
* * * *
12113758 --GCGGGCGGGCAGGCAGTACGCCGATC-GAGAGACGAGATACGCAAGCCGTGGATCGATAGGGT
131 CGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
12113820 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAGTTTTATGGCTTGTAAAT
196 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
12113885 TCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTT
261 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTT
* * *
12113950 CATGATTTTCAAAATTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCC
326 CACGATTTTCAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * *
12114015 AAGCTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACACG
391 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
12114080 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-GACACTTTAATGGCTACT
456 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
12114144 GGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGG
521 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * * *
12114209 GTTA-GGGGCCAATATAAGGGCCAAAGCACCAGCACCTATCGCACATCATGTGTGCACACCCCCT
586 GATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * ** * * * *
12114273 CGGCCCCCTGATCATTGG-ACCCCGAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGTGATA
650 CGCCCCCCCGATCACCGGAACCCC-AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATA
** * * *
12114337 GTGCCCCGGTGAAGAAAAATGCGACACTAGCACATGCCCGAGCCCAGCGTGTGCTACCGTAACCC
714 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCC
*
12114402 TCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCTGTA
779 TCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTA
* * * * *
12114467 TGCCTAAGTCAACCCATGAAACGAACGTGGGGGCACTCGGCCGGCCAGAGGGGTGGG
844 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
** * * * *
12114524 ATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCTTGCTTCCACAGCCCTC
1 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC
* * * *
12114589 GGTCCGGTCTAATCTTAGGCTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGTAG
66 AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-AG
* * * * * *
12114654 GCGGACGGGCGGGCAGGCTCTACGTCGACCAGACAGACGGGATGTGCAAGTCGTGGATTGATAGG
130 GCGG-CGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
12114719 GTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
194 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
12114784 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTT
259 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTT
** ** * * * *
12114849 TTCATAATTTTCGAAGCTTTTT-CGGCTCCGA-ATGTTTTAAAATTATTTCGAAAGGAGTTTTGG
324 TTCACGATTTTC-AAAATTTTTGCGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * * *
12114912 CCCCAAAC-TCGTCAAACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAACTAAAA
387 CCCCAAACTTGGT-AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
** *
12114976 ACTCCTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGG
451 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* ** *
12115041 CTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGATGTGTGAGTTCTTGAGGTTTGA
516 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
12115106 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCATATCATGTGTGCACA-C
581 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * *
12115170 CCCCCGGCCCCCCGATCACCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACG
646 CCCCCGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCG
** ** *
12115235 ATAGTGCCCCGACGAAGAAAAATGCAACACCAGCACATGCCAAAGCCCAGCATGTGCTACTGTAA
711 ATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAA
* *
12115300 ----C---CC--TCCG---TT---C-------G-AC-CCG-AT-CCTAGACTGGGAATGAACTCC
776 CCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT
* * * *
12115339 ATATGCCTAAGGCAACCCACGAAATGAGCGTGCGGGAGCTCAGCCGGCCAGAGGGGTGGG
841 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
** * * ** * *
12115399 ATATGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCATGCTACTAATCCTGCTGTCGCAACCCTC
1 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC
* * * ** *
12115464 AATTCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAC--GA--
66 AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGG
* * *
12115525 --GCGGGCGGGCAGGCACTACGCCGATC-GAGAGACGAGATACGCAAGCCGTGGATCGATAGGGT
131 CGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
12115587 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAGTTTTATGGCTTGTAAAT
196 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
12115652 TCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTT
261 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTT
* *
12115717 CATGATTTTCAAAATTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
326 CACGATTTTCAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * *
12115782 AAGCTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACACG
391 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
12115847 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACT
456 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* **
12115912 GGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAAAGGGTGTGAGTTCTCGAGGTTTGATGAGG
521 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* ** * * * *
12115977 GTTAGGGGGCCAATATAAGGGTAAAGCACCAGCACCTATCGCACATCATGTGTGCACACCCCCTC
586 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * *** * * * *
12116042 GGCCCCCTGATCATTAG-ACCCCGAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCAGTGATAG
651 GCCCCCCCGATCACCGGAACCCC-AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATAG
** * * * *
12116106 TGCCCCGGTGAAGAAAAATGCGACACTAGCACATGCCCGAGCCCAGCGTGTGCTGCCTGTAACCC
715 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC-GTAACCC
** * * * *
12116171 TC-AGTCCAATCTGATCCTAGACT-GGAATGAACTCCGTATGCTTAGACT-AGAATGAACTCCGT
779 TCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGT
* * * * * **
12116233 ATGCCTAAGTCAACCTACGAAATGGGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGG
843 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
* * * * * *
12116291 ATACGCAAGCCGAGGATCGGTCAGGTCCCCCTCTGTGTGCTACTGATCCTGCTGCCGCAACCC-C
1 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC
* * * * * *
12116355 CGCTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCG
66 AG-TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-A
*** * * * * * *
12116420 GGCGGCCGGGCGGATGGGCACTACGCCGATC-GAGAGACGAGATGTGCAAGCCATGGACCGATAA
129 GGCGG-CGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
12116484 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
193 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
*
12116549 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
258 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATT
* * *
12116614 TTTCACGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG
323 TTTCACGATTTTCAAAA-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * * *
12116679 CCCCAAACTTGGTAGACATGATGCTTGTATTTTTTTTGGGACGCACAAAAAAATTCAACTAAAAA
387 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
12116744 CTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
452 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
12116809 TACTGGCAGCAAACCAGTAAAATCTTAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGAT
517 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
*** * *
12116874 GAGGGATAGGGGGCCAATATAAGGGCCAAGTATGGGTACCCATCACACATCATGTGCGCACACCC
582 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* * * *
12116939 CCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAATGATGCTCCAGC
646 CCCCC-GCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGC
* * ** *
12117004 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGTCGCA
710 GATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTA
** * * *
12117069 ACCCTC-AGTTTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGAATGAACT
775 ACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * ** *
12117133 CCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGTTGGCCAGAGGGGCGGG
839 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
* * * * * * *
12117195 ATGCGTAAGCTGGGGATCGGTCGGGTCGCCCTCTGCATGCTATC-AGTCCTACTACCACAACCCT
1 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGA-TCCTGCTGCCACAACCCT
** * * * * * *
12117259 TGGTCCGGTCCAATCTTATACTGGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAATGCACG
65 CAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-G
* * *
12117324 -GGCTGGCGGGTGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGTAAG-CGTGGATCGATA
128 AGGC-GGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* **
12117387 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TCATGTGCCAATGCCATTTTTATGTTTTG
192 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTG
* * * *
12117451 TAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTA
256 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTA
* * * *
12117516 TTTTTCACGA-TTTC-AAATCTTTTTCTGGTTCGAGATTTTTGAAAATGTTTTCGGATGGAGTTT
321 TTTTTCACGATTTTCAAAAT-TTTTGC-GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * * * *
12117579 TGGCCCGAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCTTGCAAAAAAAAATTCAACTAA
384 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
12117644 AGACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGGCACTTTAAT
449 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
12117709 GGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
514 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
12117774 GATGAGGGATACGGGTCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACA
579 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
12117839 CCCCCCAGCCCCCCCTGATCGCCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGCGATGCTCCG
644 CCCCCCCGCCCCCCC-GATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* * * * * *
12117904 ACGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
708 GCGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
* * * * ** *
12117969 CAACCCTCGATCTGGTTCGATCCTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGTATGAAC
773 TAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
** * * *
12118034 TCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGGTCAGTCGGCCAGAGGGGTGGG
838 TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
* * ** * **
12118097 ATGCGCAAGCCGAGGATCGG-CCGGTCCCCCTCTATGTGCT-GCGATCCTATTGCCACAACCCTC
1 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC
* * * *
12118160 AGTCTGGTCTGAA-CTTAGACTAGGAATGAACTCCGTAAGCCTAAGCCAACTGACGAAAC--GA-
66 AGTCCGGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAG
* * *
12118221 ---GCGGGC--G--GGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGG
130 GCGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * * *
12118279 TGGTAGGTGTGTTTAGGCACATCTTCATATTTCTATGTGCCGATGCCAATTTTGTGGCTTGTAAA
195 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
* * *
12118344 TTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
260 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
12118409 TCATGATTTTGGAAACTTTTTACGGTTCGGGATTTTATAAAATTTTTTCGGAAGGAGTTTTGGCC
325 TCACGATTTT-CAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
** * * *
12118474 CCAAACAAGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACT
389 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* **
12118539 CGAAGTGTACAAGATTTTATGACCATTTG-AAAAAGTTGTCCCCATTTTTGACACTTTAATGGCT
454 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG-TGTCCCCATTTCAGACACTTTAATGGCT
*
12118603 ACTGGC-GACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
518 ACTGGCAG-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
12118667 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
582 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * *
12118731 CCCCGACCCCCCGATCA-CTGAACACCAATGCCGTCGGTTAGG-T-T----C--T--T-CGGTGA
647 CCCCGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGA
* * * * ** *
12118784 TGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCATGTGCTGTCGCAAC
712 TAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAC
* * * *
12118849 CCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
777 CCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
12118893 CTAAAAAAAC
Statistics
Matches: 8483, Mismatches: 1013, Indels: 431
0.85 0.10 0.04
Matches are distributed among these distances:
856 50 0.01
857 3 0.00
858 2 0.00
859 1 0.00
860 1 0.00
861 1 0.00
862 1 0.00
863 1 0.00
865 16 0.00
866 616 0.07
867 676 0.08
868 358 0.04
869 21 0.00
870 2 0.00
872 2 0.00
873 3 0.00
874 2 0.00
875 176 0.02
876 272 0.03
877 179 0.02
878 9 0.00
879 9 0.00
880 7 0.00
881 5 0.00
882 175 0.02
883 1 0.00
884 1 0.00
885 106 0.01
886 3 0.00
887 23 0.00
888 37 0.00
889 168 0.02
890 285 0.03
891 14 0.00
892 349 0.04
893 8 0.00
894 122 0.01
895 303 0.04
896 140 0.02
897 385 0.05
898 85 0.01
899 4 0.00
900 375 0.04
901 1034 0.12
902 1004 0.12
903 526 0.06
904 335 0.04
905 309 0.04
906 277 0.03
907 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC
AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGG
CGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTT
CACGATTTTCAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
GCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATAGT
GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTC
GATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
Found at i:12114446 original size:26 final size:26
Alignment explanation
Indices: 12114417--12114469 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12114407 CCGGTCCGAT
*
12114417 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
12114443 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
12114469 C
1 C
12114470 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:12116223 original size:25 final size:25
Alignment explanation
Indices: 12116188--12116236 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
12116178 AATCTGATCC
*
12116188 TAGACTGGAATGAACTCCGTATGCT
1 TAGACTAGAATGAACTCCGTATGCT
12116213 TAGACTAGAATGAACTCCGTATGC
1 TAGACTAGAATGAACTCCGTATGC
12116237 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
TAGACTAGAATGAACTCCGTATGCT
Found at i:12117124 original size:26 final size:26
Alignment explanation
Indices: 12117088--12117140 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12117078 TTGATCCGAT
* *
12117088 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
12117114 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
12117140 C
1 C
12117141 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:12117820 original size:903 final size:891
Alignment explanation
Indices: 12115323--12118897 Score: 4619
Period size: 903 Copynumber: 4.0 Consensus size: 891
12115313 CCGATCCTAG
* * * *
12115323 ACTGGGAATGAACTCCATATGCCTAAGGCAACCCACGAAATGAGCGTGCGGGAGCTCAGCCGGCC
1 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
* * *
12115388 AGAGGGGTGGGATATGCAAGCC-AGGGATCGGTCGGGTCCCCCTCTGCATGCTACTA-ATCCTGC
66 AGAGGGGCGGGATACGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCATGCTAC-AGATCCTAC
* * * * * * * *
12115451 TGTCGCAACCCTCAATTCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCG
129 TGCCACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
12115516 ACGAAACGAGCGGGCGGGCAGGCACTACGCCGATCGAGAGACGAGATACGCAAGCCGTGGATCGA
194 ACAAAACGAGCGGGCGGGCGGGCACTACGCCGACCGAGAGACGAGATGCGCAAGCCGTGGATCGA
*
12115581 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-TGCATGCCAATGCCAGTTTTATGGCT
259 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCATG--TGCCAATGCCATTTTTATGGCT
* *
12115645 TGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTC
322 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
12115710 TATTTTTCATGATTTTCAAAAT-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
387 TATTTTTCACGATTTTC-AAATCTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
12115774 TTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTA
451 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTA
* *
12115839 AAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAA
516 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* **
12115904 TGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAAAGGGTGTGAGTTCTCGAGGTT
581 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * * *
12115969 TGATGAGGGTTAGGGGGCCAATATAAGGGTAAAGCACCAGCACCTATCGCACATCATGTGTGCAC
646 TGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *** *
12116034 ACCCCCTCGG-CCCCCTGATCATTAG-ACCCCGAATGCCGTCGGTCAGGTTCTCTGGCGATGCTC
711 ACCCCC-CGGCCCCCCCGATCACCGGAACCCC-AATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
* * ** * * *
12116097 CAGTGATAGTGCCCCGGTGAAGAAAAATGCGACACTAGCACATGCCCGAGCCCAGCGTGTGCTGC
774 C-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * *
12116162 CTGTAACCCTCAGTCCAATCTGATCCTAGACT-GGAATGAACTCCGTATGCTTAG
838 C-GCAACCCTCAGTCCGATCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAA
* * * * * *
12116216 ACT-AGAATGAACTCCGTATGCCTAAGTCAACCTACGAAATGGGCGTACGGGCGCTCAGTCGGCC
1 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
* * ** * *
12116280 AGAGGGGCAGGATACGCAAGCCGAGGATCGGTCAGGTCCCCCTCTGTGTGCTACTGATCCTGCTG
66 AGAGGGGCGGGATACGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTACAGATCCTACTG
* * * **
12116345 CCGCAACCC-CCGCTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA
131 CCACAACCCTCAG-TCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
12116409 CAAAACGAGCGGGCGGCCGGGCGGATGGGCACTACGCCGATCGAGAGACGAGATGTGCAAGCCAT
195 CAAAACGAGC--G-GG-CGGGC----GGGCACTACGCCGACCGAGAGACGAGATGCGCAAGCCGT
* * **
12116474 GGACCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
252 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-ATGTGCCAATGCCATTTTT
12116539 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
316 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
12116604 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAA
381 GTTTTCTATTTTTCACGATTTTCAAATCTTTTT-CGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * * *
12116669 GGAGTTTTGGCCCCAAACTTGGTAGACATGATGCTTGTATTTTTTTTGGGACGCACAAAAAAATT
445 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
12116734 CAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
510 CAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
12116799 CTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTTAAATGCTCTTTAAGGGTGTGTGAGTTCTC
575 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *** * *
12116864 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATGGGTACCCATCACACATCATGT
640 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGT
* ***
12116929 GCGCACACCCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAATG
705 GCGCACA--CCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
*
12116994 ATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATT
768 ATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* ** * *
12117059 TGCTGTCGCAACCCTCAGTTTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAA
832 TGCTGCCGCAACCCTCAGTCCGATCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAA
* * *
12117119 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGTTGGCC
1 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
* * * * *
12117184 AGAGGGGCGGGATGCGTAAGCTGGGGATCGGTCGGGTCGCCCTCTGCATGCTATCAG-TCCTACT
66 AGAGGGGCGGGATACGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTA-CAGATCCTACT
* ** * * * *
12117248 ACCACAACCCTTGGTCCGGTCCAATCTTATACTGGGAATGAACTCCGTATGCCAAAGCCAACCCA
130 GCCACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
12117313 CAAAATGCACGGGCTGGCGGGTGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGTAAG-CG
195 C-AAA---AC--G--AGCGGGCGGGCGGGCACTACGCCGACC-GAGAGACGAGATGCGCAAGCCG
12117377 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCATGTGCCAATGCCATTTT
251 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCATGTGCCAATGCCATTTT
** * *
12117442 TATGTTTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
315 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
12117507 CGTTTTTTATTTTTCACGA-TTTCAAATCTTTTTCTGGTTCGAGATTTTTGAAAATGTTTTCGGA
380 CGTTTTCTATTTTTCACGATTTTCAAATCTTTTTC-GGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * * *
12117571 TGGAGTTTTGGCCCGAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCTTGCAAAAAAAAAT
444 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
12117636 TCAACTAAAGACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGGC
509 TCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
12117701 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCT
574 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
12117766 CGAGGTTTGATGAGGGATACGGGTCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATG
639 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATG
* * *
12117831 TGCGCACACCCCCCAGCCCCCCCTGATCGCCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGCG
704 TGCGCACACCCCCCGGCCCCCCC-GATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * *
12117896 ATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
768 ATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * ** *
12117961 TGCTGCCGCAACCCTC-GATCTGGTTCGATCCTAGACTGGGAATGAACTTTGTATGCTTAG
832 TGCTGCCGCAACCCTCAG-TCCGATCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAA
* * *
12118021 ACTGGGTATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGGTCAGTCGGCC
1 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
* * * *** * *
12118086 AGAGGGGTGGGATGCGCAAGCCGAGGATCGG-CCGGTCCCCCTCTATGTGCTGC-GATCCTATTG
66 AGAGGGGCGGGATACGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTACAGATCCTACTG
* * * *
12118149 CCACAACCCTCAGTCTGGTCTGAA-CTTAGACTAGGAATGAACTCCGTAAGCCTAAGCCAACTGA
131 CCACAACCCTCAGTCCGGTC-CAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
12118213 CGAAACGA----GCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGA
195 CAAAACGAGCGGGCGGGCGGGCACTACGCCGACC-GAGAGACGAGATGCGCAAGCCGTGGATCGA
* * * *
12118274 TAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTATGTGCCGATGCCAATTTTGTGGCTT
259 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-ATGTGCCAATGCCATTTTTATGGCTT
* *
12118339 GTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCT
323 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
12118404 ATTTTTCATGATTTTGGAAA-CTTTTTACGGTTCGGGATTTTATAAAATTTTTTCGGAAGGAGTT
388 ATTTTTCACGATTTT-CAAATCTTTTT-CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
** * * * *
12118468 TTGGCCCCAAACAAGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTA
451 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTA
* **
12118533 AAAACTCGAAGTGTACAAGATTTTATGACCATTTG-AAAAAGTTGTCCCCATTTTTGACACTTTA
516 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG-TGTCCCCATTTCAGACACTTTA
*
12118597 ATGGCTACTGGC-GACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
580 ATGGCTACTGGCAG-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
12118661 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
644 TTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
12118726 ACACCCCCC-GACCCCCCGATCA-CTGAACACCAATGCCGTCGGTTAGGTTCT---TCG--G-T-
709 ACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
* * * *
12118782 ---GATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCATGTGCTGTC
774 CGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * *
12118844 GCAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
839 GCAACCCTCAGTCCGATCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAA
12118897 A
1 A
12118898 AAAACCCACG
Statistics
Matches: 2351, Mismatches: 284, Indels: 111
0.86 0.10 0.04
Matches are distributed among these distances:
876 97 0.04
877 1 0.00
881 1 0.00
882 1 0.00
884 2 0.00
887 25 0.01
888 45 0.02
889 148 0.06
890 278 0.12
891 5 0.00
892 170 0.07
893 4 0.00
894 2 0.00
895 2 0.00
896 7 0.00
899 6 0.00
900 241 0.10
901 302 0.13
902 259 0.11
903 404 0.17
904 313 0.13
905 26 0.01
908 6 0.00
909 2 0.00
910 2 0.00
912 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
AGAGGGGCGGGATACGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTACAGATCCTACTG
CCACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
AAAACGAGCGGGCGGGCGGGCACTACGCCGACCGAGAGACGAGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCATGTGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTCAAATCTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGCGATG
GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
TCAGTCCGATCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAA
Found at i:12118041 original size:26 final size:26
Alignment explanation
Indices: 12117992--12118042 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
12117982 GGTTCGATCC
***
12117992 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
12118018 TAGACTGGGTATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
12118043 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:12119585 original size:26 final size:26
Alignment explanation
Indices: 12119549--12119601 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12119539 CCGATACGAT
*
12119549 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12119575 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12119601 C
1 C
12119602 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12121354 original size:26 final size:26
Alignment explanation
Indices: 12121325--12121377 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12121315 TCGGTCCGAT
* *
12121325 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12121351 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12121377 C
1 C
12121378 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:12122468 original size:12 final size:12
Alignment explanation
Indices: 12122451--12122475 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12122441 ACCGACGAAA
12122451 CGAGCGGGCGGG
1 CGAGCGGGCGGG
12122463 CGAGCGGGCGGG
1 CGAGCGGGCGGG
12122475 C
1 C
12122476 ACTACGCCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.64, T:0.00
Consensus pattern (12 bp):
CGAGCGGGCGGG
Found at i:12123160 original size:26 final size:26
Alignment explanation
Indices: 12123124--12123176 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12123114 CGGGTCTGAT
*
12123124 CTTAGACTGGGATTGAA-TTCCGTATG
1 CTTAGACTGGGAATGAACTT-CGTATG
*
12123150 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12123176 C
1 C
12123177 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:12124044 original size:26 final size:26
Alignment explanation
Indices: 12124015--12124067 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12124005 CGGGTCTGAT
*
12124015 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12124041 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12124067 C
1 C
12124068 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12125846 original size:26 final size:26
Alignment explanation
Indices: 12125810--12125862 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12125800 CCGATCGAAT
12125810 CTTAGACTGGGAATCAAC-TCTGTATG
1 CTTAGACTGGGAATCAACTTC-GTATG
*
12125836 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATCAACTTCGTATG
12125862 C
1 C
12125863 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTTCGTATG
Found at i:12126753 original size:26 final size:27
Alignment explanation
Indices: 12126702--12126759 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
12126692 CTGGTCTGAT
12126702 CTTAGACTGGGAATGAACTCCATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
* *
12126728 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCATATGC
12126755 CTTAG
1 CTTAG
12126760 TCAACCCATC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:12127433 original size:904 final size:904
Alignment explanation
Indices: 12118936--12130381 Score: 15241
Period size: 904 Copynumber: 12.8 Consensus size: 904
12118926 GGGTGCTCAA
* * * *
12118936 CCGTGGATCGATAGGGTGGCAAGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAAGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * * * *
12119001 TTTTAGGGCTTGTAAATCCATACAGTGGTCCTTTAAGCCTTCACGTGAAGTTTCATGCCAAGACG
66 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** * * *
12119066 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGTGTTTTGGGATTTTTTAAAATTTTTTT
131 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
12119131 GGAAGGAGTTTT-GCCCCAAATTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
196 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
12119195 AATGCAGCCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCC
261 AATTCAG-CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
12119260 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
325 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
12119325 TTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
390 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
12119390 CATGT-AAGCACA-CCCCCC-G-CCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTT
455 CATGTGCA-CACACCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * * * *
12119451 CGGTGATGCTCCGGTGATGGTGCCCC-AGTGAAGAAAAATGCGACACCAGCAC-TACCCGAGCCC
519 CGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
12119514 AGCATGTGCTGCCACAACCCTCTGTCCGATAC-GATCTTAGACTGGGAATGAACTCTGTATGCTT
583 AGCATGTGCTGCCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTT
*
12119578 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGG
647 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * ** *
12119643 CCAGAGGGGCGAGATGTGCAAGTCGGGGATCAACCTGGTCCCCCTCTATGTGCTGTCGATCCTAC
712 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGC
* * *
12119708 TGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCG
777 TGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
12119773 ACGAAATGAGCGGACGGGCGGGTGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAG
842 ACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
12119836 CCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
12119901 TTTTATGGCTAGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
66 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
12119966 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
131 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* ** *
12120031 GGAAGGATTTTTGTTCCCACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
196 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
12120096 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
261 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
12120161 GACACTTTAATGGCTACTGGCAACAAACCTGTAAACTCTCAAATGCTCTTTAA-GGGGTGTGAGT
326 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
12120225 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCAATCGCACATC
391 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * * **
12120289 ATGTGCACACACCCCCTTGGACCCCCC-ATCGCCGGAACCCCAATGCCGTTGGTCAGGTTCTCCG
456 ATGTGCACACACCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
12120353 ACGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGC
521 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
*
12120418 ATGTGCTGCTGCAA-CC-C--TC--G---G----T---CT--G---G---TCCG-AT-CTTAGAC
586 ATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
12120457 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAGTCGGCCAG
651 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * *
12120522 AGGGGCGAGATGTGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACT
716 AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTGCC
** * *
12120587 GTAACCCTCTGG-CTGGTCCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACG
781 ACAACCCTC-GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
12120651 AAACGAGCAGGTA--GACGGGCGGGCGGGCACTACACTGGCTAGAGAGACGGGATGCGCAAG
845 AAACGAGC-GG-ACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
12120711 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * * * * *
12120776 TTGTATGGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTCACGAGACGTTTCATGCCGAGATG
66 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
12120840 ACTCGTTTTCTATTTTTCACGAATTTTGAAACTTTTTACGGTTCGAGA-TTTTTAAAATTTTTTC
131 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
** * * * *
12120904 GGAAGGAGTTTTGGCCCCAAACTCAGTAGATGAGATCCTTGTATTTTTTTTGGCTTGCACAAAAA
196 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
12120969 AACTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
261 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
12121034 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
326 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
12121099 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
391 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * **
12121164 ATGTGCACACACCCCCTCGGACCCCCC-ATCGCCGGAACCCCAATGCCGTTGGTCAGGTTCTCCG
456 ATGTGCACACACCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* *
12121228 ACGATGCTCCGGTGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
521 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
12121293 ATGTGCTGTCACAACCCGCGGT-TCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGA
586 ATGTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
12121357 CTGAGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACTAGCGTGCGGGCGCTCAACCAGCCA
650 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* ** * ** * *
12121422 GAGGGGCGGGACGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCATGCTAC
715 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTGC
* * * * * *
12121487 CACAACCCTCAGTCTGGTACAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACTGACG
780 CACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
*
12121552 -AA--A-C-GA---GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
845 AAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
12121604 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTACCAATCCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* *
12121669 TTTTATTGGCTTGTAAATTCATGCAATGG-CCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
66 TTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
12121733 GACTCATTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
130 GACTC-GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * * * *
12121798 TTGAAAGGATTTTTGGCCCCAAACTTCGTAGACATGATCCCTGTATTTTTGTTGGCATTCAAAAA
194 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
12121863 AAAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
259 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
12121928 CAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGA
324 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
12121993 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATTTAAGGGCCAAGTACAAGCACCAATCGCACA
389 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
12122058 TCATGTGCACACACCCCCTCGGACCCCCC-ATCACCGGAACCCCAATGCCGTCAGTCAGGTTCTC
454 TCATGTGCACACACCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTC
*
12122122 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
519 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * ** * * * *
12122187 GTATGTGTTGTTGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAG
584 GCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
** * * **
12122252 ACTGGGAATGAACTCCGTATAACTAGGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAACC
649 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * *
12122317 AGAGGGGCGGGACGTGCAAGTCGAGGATCGACCGGGTCCCCCTCTACATGCTGCCAATCCTGCTA
714 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTG
* * *
12122382 CCACAACCCTCGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
779 CCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
12122447 GAAACGAGCGGGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGTAAG
844 GAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
12122508 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * * * *
12122573 TTTTATAGCTTGTAAATTCATA-AAGTGGTCCTTTAAGCCTTCATGTTAAGTTTAATGGCAAGAC
66 TTTTATGGCTTGTAAATTCATACAA-TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
12122637 GAATCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
130 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
12122702 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGGCATGATCCTTGTATTTTTGTTGGTATGCACAAAA
195 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
12122767 ACATTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
260 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
12122832 AGACACTTTAATGGCTACGGGTAGCAAACCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAG
325 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
12122897 TTTTCGATGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATAT
390 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
12122962 CATGTGCACACACCCCCCCGACCCCCCCGATCG-TCGGAACCCCAATGCCGCCGGTCAGGTTCTC
455 CATGTGCACACACCCCCCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** * *
12123026 CGACAATGCTCCAACGAT-GTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCA
519 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
12123090 GCATGTGCTGCCGCAACCCTTGGTCGGGTCTGATCTTAGACTGGGATTGAATTCCGTATGCTTAG
584 GCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
12123155 ATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGCGCTCAGCCGGC
649 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCAGCCGGC
* * * * ** * ** * * * *
12123220 TAAAGAGGCGAGATGATCAAGTCGGGGATCGGTCGGGACCCCCTCTACGTGTTGTCGATCTTGCT
713 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCT
* **
12123285 GCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTATGTATGCCTAAGCCAACCGA
778 GCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
12123350 CG-AA--A-C-GA-------GCGGGCGGGCACTATGACGTCCAGAGAGACAGGATGCGCAAG
843 CGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
12123400 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
12123465 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
66 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* **
12123530 ACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTTTGGTTCGGGATTTTTTAAAATTTTTTC
131 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* *
12123595 GGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGAAC-AAAA
196 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
12123659 AATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
261 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * *
12123724 GACACTTTAATTGCTACGGGTAGCAAACCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGT
326 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
12123789 TTTCGATGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATC
391 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
12123854 ATGTGCACACACCCCCCCGACCCCCCCGATCG-TCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
456 ATGTGCACACACCCCCCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** * *
12123918 GACAATGCTCCAACGAT-GTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAG
520 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
12123982 CATGTACTGCCGCAACCCTTGGTCGGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
585 CATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
12124047 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAACCGACCA
650 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * *
12124112 AAGGGGC-AGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTATCGATCCTGCTGC
715 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTGC
* * * * * *
12124176 CACAACCCTCAGTCTAGTTCGATCATAAACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGACG
780 CACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* *
12124241 -AA--A-C-GA-------GCGGGCGGGCACTACGTCGTCCAGAGAGACGGGATGCGCAAG
845 AAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
12124289 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
12124354 TTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
66 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
12124419 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGTGATTTTTTAAAATTTTTTC
131 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * * *
12124484 GGAATGAGTTTTAGCCCCGAACTTGGTAGACGTGATCCTTTTATTTTCGTTGGCGTGCACAAAAA
196 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * * *
12124549 CATTCGGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATGTCA
261 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
12124614 GACACTTTAATGGCTACCGGTAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGT
326 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
12124679 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCACCGCACATC
391 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * *
12124744 ATGTGCGTACACCCCCCCCCGACCCCACCGATCG-TCGAAACCCTAATGCCACCAGTCAGGTTCT
456 ATGTGC--ACACACCCCCCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
12124808 CCGGCGATGCTCCGGCGATGGTGTCCCAATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
518 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * **
12124873 AGCATGTGTTGTCGCAACCTTCGGTCAT-GTTTGATCTTAGATTGGGAATGAACTCCAAATGCTT
583 AGCATGTGCTGCCGCAACCCTCGGTC-TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
12124937 AGATTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
647 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * ** * * *
12125002 CCAGAGGGGCGAGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTATCGATCTTGC
712 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGC
* * * *
12125067 TGCCACAACCCTCGGTTTGATCCGATCTTAGAATGGGAATGAACTCCGTGTGCCTAAGCCAACCG
777 TGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
12125132 ACGAAACGAGCGGGCGGGCGGGCAGGCAGGCACTACGTCGGCCAGAGAGACGGTATGCGCAAG
842 ACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
12125195 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
12125260 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACG
66 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
12125325 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGTGATTTTTTAAAATTTTTTC
131 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* ** * *
12125390 GGAAGGAGTTTTAGCCCTGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCGCAAAAA
196 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * * * *
12125455 CATTCGGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCAATGTCA
261 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
12125520 GACACTTTAATGGCTACTGGCAACAAACCTTTAAACTCTCAAATGCTCTTTAAGGGGGTGTGAGT
326 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
12125585 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
391 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** ** * * *
12125650 ATGTGCGTACA-CCCCTTGGCCCCCCCGATCACCGGAA-CCCTATGCCGCCGGTCAGGTTCTCCG
456 ATGTGCACACACCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * *
12125713 ACGATGCTTCAGTGATGGTGCCCCGACGAAGAAAACTGCGGCACCAGCACTTGCTCGAGCCCAGC
521 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
** * * * * *
12125778 ATAAGCTGTCGCAACCCTCGGTCCGATC-GAATCTTAGACTGGGAATCAACTCTGTATGCTTAGA
586 ATGTGCTGCCGCAACCCTCGGTCTGGTCTG-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * * *
12125842 CTGGGAATGAACTTCGTATGCCTAAGTCAACACATGAAACGAGCATACGGGCTCTCAGCCGGCCA
650 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * ** * * *
12125907 GAGGGGC-GGATGCGCAAGCCGAGAATCGGCCAAGTCCCCCTCTACATGCTGCCGATCTTCCTGC
715 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTGC
* * * *
12125971 CACAA--------C----CCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAATCGACA
780 CACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * ** * *
12126024 AAATGAGCGTGCGGCGGGCCGACGGGCCTGCACTACGTCGGCCAGGGAGACGGGATGCGCAAG
845 AAACGAGC--G-GACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
12126087 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTTCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
12126152 TTTTATGGCTTGTAAATTCATA-AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
66 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** *
12126216 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAGTTTTTTC
131 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
12126281 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCGTTGTATTTTTGTTGGCATGGACAAAAA
196 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
12126346 AATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCA
261 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
12126411 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
326 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
12126476 TCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCGCATC
391 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** *
12126540 ATGTGCACACACCCCCTCCGAACCCCCC-ATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCC
456 ATGTGCACACACCCCC-CCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** * *
12126604 GACGACGCTCCGGCGATGGTGCCCTAACGAAGAGAAATGCGACACCAGCACATGCCCGAGCCCAG
520 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** *
12126669 CATGTGCTTTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
585 CATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
12126734 CTGGGAATGAACTTCGTATGCCTTAGTCAACCCATCAAAACGAGCGTGCGGGCACTCAGCCGGCC
650 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * ** * ** * * *
12126799 AGAGGGGTGGGATACGCAAGTCGGGGATCGACCAAGTCCCCTTCTATGTGCTGCCGATCTTGCTA
714 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTG
* *
12126864 CCGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
779 CCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * * *
12126929 GAAACGGGCGGACGGGTGGGAGGGCAGGCACTATGCCGACCAGAGAGATGGGATGCGCAAG
844 GAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
12126990 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCGTGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * * *
12127055 TTTTATGGCTTCTAAATTCATATAGTGGTCCCTTAAGCCTTCACGTGAAGATTCATGGCAAGACG
66 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** * *
12127120 ACTCGTTTTTTA-TTTTCAACGATTTTCAAAACTTTTTACGGTTTGGGATATTTTAAAATTTTTT
131 ACTCGTTTTCTATTTTTC-ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
12127184 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGTACAAAA
195 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
12127249 ACATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTT
260 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
** *
12127314 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGGAATGCTCTTTAAGGCGGTGTGAG
325 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
12127379 TTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATGGCACAT
390 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
12127443 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCTGGAACCCTAATGCCGTCGGTCAGGTTCTCC
455 CATGTGCACACACCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
12127507 GACGATGGTGCC--C--T-G-G---C-A--AAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
520 GACGATGCT-CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * ** * * * ** * * * *
12127560 GCATGTGCTACCGTAAATCTTGGTCCGATCCAATCTTAGATTGGGTATGAACTCCGCATGCTTAC
584 GCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * *
12127625 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGGGCATGCGGGCACTCATCCGACC
649 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * ** * * * *
12127690 AAAGGGGTGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA
714 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTG
* * * * * * * *
12127755 TCGCAACCCTCAGTTTGGTCCAATCTTAGACT-GGAATGAACTTCGTATGGCTAAGCCAACCGAT
779 CCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
12127819 GAAATGAGTGGA--------CGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
844 GAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
12127872 CCCTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
12127937 TTTTATGGCTTGTAAATTCATA-AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
66 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** *
12128001 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAGTTTTTTC
131 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
12128066 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCGTTGTATTTTTGTTGGCATGGACAAAAA
196 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
12128131 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCA
261 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
12128196 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGT
326 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
12128261 TCTCGAGGTTTGACGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATC
391 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
12128325 ATGTTCGCACAC-CCCCCCCGGCCCCCCCGATCGCTGGAACCCTAATGTCGCCGGTCAGGTTCTC
456 ATG-T-GCACACACCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** *
12128389 C-AGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCCGACCC
519 CGA-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG-CCCGAGCC
* * ** * * *
12128453 CAGTATGTGCTACCAAAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTT
582 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
12128518 AGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACG-GACGTGCAGGCGTTCAGCCG
647 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-CGTGCGGGCGCTCAGCCG
* ** * ** * * * * *
12128582 ACCAGAGGGAAGGGATGCGCAAGCCGAGGATCGATTGGGTCTCCTTCTGCATGCTGTCAATCCTA
711 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTG
* * * *
12128647 CTGCCGCAACCCTCAGTCCGGTACGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
776 CTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
12128712 GACGAAATGAGCGGACGGGTGGGCGGGCGGGCACAACGCCGGCCAAAGAGATGGGATGCGCAAG
841 GACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
12128776 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * * * *
12128841 TTTTATAGCTTGTAAATTCATA-AATTGGTCCTTTAAGCCTTCATGTTAAGTTTCATGGCAAGAT
66 TTTTATGGCTTGTAAATTCATACAA-TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
12128905 GACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTT
130 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
12128970 CGGAAGG-GCTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTTTTTTTGTTGGCATGCATAAAA
195 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
12129034 ATATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
260 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
12129099 AGACACTTTAATGGCTACTGGCCA-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
325 AGACACTTTAATGGCTACTGG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
12129163 GTTATCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
389 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
12129228 TCATGTGCGCACAACCCCCCCCGGCCCCCCCGATCGTTGGAACCCCAATACCGTCGGTCAAGTTC
454 TCATGTGCACAC-A-CCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTC
* * ** ** ** * * *
12129293 TCCGACAATGCTCTGATGATATTGCCCCGGTGAACAAAAATGTGGCACCAGCACATGCCTGAGCC
517 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * *
12129358 CAGGA--TG-T--CGCATCCCTCGGTCTGGTCTGATATTAGACTGGGAATGAACTCTGTTTGCTT
582 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
12129418 AGACTGGGAATAAACTCCGTATGCCTAAGTCAACACATGAAACGAGCGTGCGGGCGGGCGCTCAG
647 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT----GCGGGCGCTCAG
* * * * * * * *
12129483 CCGGCCAGAGGGGTGGGACGCGCAAGCAGGGGATTGGCCGGGTCTCCCTCTACGTGCTATCGATC
708 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATC
* * * * *
12129548 TTGCTGTCACAACCCTTGGTCTGGTCCGATCTTAGACTAGGAATGAACTCTC-CATGCCTAAGCC
773 CTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCC
* * ** * * * * * * *
12129612 AACTGACGAAACGAGTGGGTGGGCGGGCGGGCAGGCACTACGTCGACTAAAGAGACTGGATGTGC
837 AACCGACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
12129677 AAG
902 AAG
* * **
12129680 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATAACAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
12129745 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
66 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
**
12129810 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
131 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
12129875 GGAAGCAGTTCTT-ACCCCAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCATGCACAAAA
196 GGAAGGAGTT-TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
12129939 AAATTCAGCTAAAAACTCAAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
260 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
12130004 AGACACTTTAACGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
325 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
12130069 TTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACAT
390 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
12130134 CAAGTGCGCACACCCCCCCGGCCCACCCGATTG-TCGAAACCCCAATGCTGCCGGTCAGGTTCTC
455 CATGTGCACACACCCCCCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * ** *
12130198 CGATGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATATGGCACCAGCACATGCCTGAGCCCA
519 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
12130263 TCATGTGTTGCCGCAACCCTCGGT-TCGGTCCGATCTTAGACTGGGAATGAACTCTGTATTCTTA
584 GCATGTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
12130327 GACTGGGAATGAACTCCCTATGCCTAAGCCAACCGAAGAAACGAGCG-GTCGGGCG
648 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCG
12130382 AACGGGCAGG
Statistics
Matches: 9384, Mismatches: 1005, Indels: 310
0.88 0.09 0.03
Matches are distributed among these distances:
873 185 0.02
874 123 0.01
875 472 0.05
876 8 0.00
877 5 0.00
879 1 0.00
880 1 0.00
881 340 0.04
882 128 0.01
883 61 0.01
884 2 0.00
885 2 0.00
886 1 0.00
887 1 0.00
888 3 0.00
889 434 0.05
890 298 0.03
891 844 0.09
892 746 0.08
893 303 0.03
894 241 0.03
895 238 0.03
896 647 0.07
897 7 0.00
898 38 0.00
899 59 0.01
900 469 0.05
901 308 0.03
902 203 0.02
903 772 0.08
904 1333 0.14
905 400 0.04
906 622 0.07
907 2 0.00
908 87 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (904 bp):
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCACACACCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTGCC
ACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
Found at i:12128525 original size:26 final size:26
Alignment explanation
Indices: 12128489--12128541 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12128479 CCGATCTGAT
*
12128489 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12128515 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12128541 C
1 C
12128542 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12131697 original size:26 final size:26
Alignment explanation
Indices: 12131668--12131720 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12131658 CTGGTCCGAT
*
12131668 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12131694 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12131720 C
1 C
12131721 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12132586 original size:26 final size:26
Alignment explanation
Indices: 12132550--12132602 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12132540 CCGGTCTGAT
* *
12132550 CTTAGATTGGGAAT-AAGCTTCGTATG
1 CTTAGACTGGGAATGAA-CTCCGTATG
12132576 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12132602 C
1 C
12132603 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12133289 original size:26 final size:26
Alignment explanation
Indices: 12133251--12133301 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12133241 GGTCCGATCT
* *
12133251 TAGACTGGGAATGAACTCTGTATGCG
1 TAGACTAGGAATGAACTCCGTATGCG
*
12133277 TAGACTAGTAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
12133302 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCG
Found at i:12134160 original size:26 final size:26
Alignment explanation
Indices: 12134131--12134181 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12134121 GGTCCGATCT
12134131 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
*
12134157 TAGACTGGTAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
12134182 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:12135053 original size:26 final size:26
Alignment explanation
Indices: 12135013--12135065 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12135003 CTGGTCTGAA
* *
12135013 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
*
12135039 CTTAGACTGGAAATGACCTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
12135065 C
1 C
12135066 CCAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:12135503 original size:892 final size:888
Alignment explanation
Indices: 12132624--12136092 Score: 4687
Period size: 892 Copynumber: 3.9 Consensus size: 888
12132614 AATGAAACGA
* *
12132624 GATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTG
1 GATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTG
* * *
12132689 CCAATGCCGTTTTCATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * ** * *
12132754 TGGCAAGACGACTCG-TTTTCTATTTTTTAGGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT
131 TGGCAAGACGACTCGTTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGTTTTTTT
*
12132818 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGC
196 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
*
12132883 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTG
261 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
12132948 TCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAG
326 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAG
* *
12133013 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGTCGATATAAGGGCCAAGTACCAGCACC
391 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
*
12133077 CATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
456 CATCGTACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
* * * *
12133141 CAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATAC
521 CAGGTTCT----C--T-AT--GACGATGGTGCCCCG-CGAAGAAAAATGCGACACCAACACATGC
* * * *
12133206 CCGAGCCCAGCATGTGCTACCGCAACCCTCAGTGTGGTCCGATCTTAGACTGGGAATGAACTCTG
576 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
* * *
12133271 TATGCGTAGACTAGTAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCT
641 TATGCGTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
* * * ** *
12133336 CAGCCGGCCAGAGGGG-CGGATGCACAAGTCGGGGATCGGCCTCGTCCCCCTCTGCATGCTACCG
706 CAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCG
* ** *
12133400 ATCCTACTACTACAACCCTCGGTCCGGACCGATCTTAGG-CTGGGAATGAACTCCGTATGCCTAA
771 ATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTT-GGACTGGGAATGAACTCCGTATGCCTAA
*
12133464 GCCAACCGACGAAAC-GAGCGGGCGGGCGGGCACTACACCAGCCAGAGAGACGG
835 GCCAACCGACGAAACAGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGG
***
12133517 GATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
1 GATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTG
* * *
12133582 CCAATGCCATTTTTATGGCTTGTAAATTGACACAATGGTCCCTAAAGCCTTCACGTGAAGTTTCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * *
12133647 TGGCAAGATGACTCGTTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGATTCGGGGTTTTTT
131 TGGCAAGACGACTCGTTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGTTTTTTT
* * ** * *
12133712 AAAATTTTTTCGTAAGAAGTTTTGGCCGTAAACTTGGCAAACATGATCCTTGTATTTTTGTTGGC
196 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
* * *
12133777 TTGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGCGACCATTTG-AAAAAGTG
261 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
12133841 TCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAG
326 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAG
*
12133906 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
391 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
*
12133971 CATCGTACAT-ATGTGCG--CACCCCCCCGACCCCCCCGATCGTCGGAACCTCAATGCCG-CTGG
456 CATCGTACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTC-GG
* * * * * * * * * *
12134032 TTA-GATCTC--CGACGATGTTGCCCTGGTGAAAAAAAATGTGGCACCGACACATGCCCGAGCCC
520 TCAGGTTCTCTATGACGATGGTGCCC-CGCGAAGAAAAATGCGACACCAACACATGCCCGAGCCC
* * *
12134094 AGCATGTGCTGCCACTACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCGTA
584 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCGTA
* ** *
12134159 GACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTATGGGTGCTCAGCAGGC
649 GACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGC
* * * ** * *
12134224 CAGAAGGGCGGGACGCGCAAGCCGGGGATCGGCCTAGTCCCCCTCTGCGTACTGCCGATCCTG-T
714 CAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
* * * * *
12134288 GGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCG
779 -ACCGCAACCCTCGGTCCGGTCCGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* *
12134353 ACGAAACA-AGCGGGCGGGCGGGCACTACGCTAG-CAGAGAGACAG
843 ACGAAACAGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGG
* * * *
12134397 GATGCGCAAGCCGTGCATTGATAGGGTGGTAGGTGGGTTGAGGCACCTCTTTATATTT-T-TGCA
1 GATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG--
** * *
12134460 TGCCAATGCCATTTTTATGGCTTGTAAATAGATACAATGGTCGCTTAAGCCTTCACATGAAGTTT
64 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
12134525 CATGGCATGACGACTCGTTTTTCTA-TTTTCACGATTTTCAAAACTTTTTACGGTTTGAGGTTTT
129 CATGGCAAGACGACTCGTTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG-GGTTTT
* * * *
12134589 TTCAAAATTTTTTCGTAAGGAGTTTTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTTTT
193 TTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
*
12134654 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAA
258 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
12134719 GTGTCCCCATTCCAGACACTTTAATGGCTACTGGTAGCAAACCTTTAAAATCTTAAATGCTCTTT
323 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTT
*
12134784 AAGGGGGTTTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
388 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
12134849 ACCCATCGTACAT-ATGTGCGCACACCCCCCCCGA-CCCCCCGATCG-CTGGAACCCCAATGCCG
453 ACCCATCGTACATCATGTGCGCACA-CCCCCCCGACCCCCCCGATCGTC-GGAACCCCAATGCCG
* * *
12134911 TCAGTCAGGTTCT-T-TGACGATGTTGCCCTCGCGAAGAAAAATGCGACACCAACACATGCCGGA
516 TCGGTCAGGTTCTCTATGACGATGGTGCCC-CGCGAAGAAAAATGCGACACCAACACATGCCCGA
* * * *
12134974 GCCCAGCATGTGCTTCCGTAACCCTCGGTCTGGTCTGAACTTAGACTGGGAATGAACTCCGTATG
580 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
12135039 CTTAGACTGGAAATGACCTCCATATGCCCAAGTCAGCCCACAAAACGAGCGTGCGGGTGCTCAGC
645 CGTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
12135104 TGGCCAG-GGGGTGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
710 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
* * **
12135168 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTGGACTATGAATGAACTCCGTATGCCTAAGCCAA
775 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
12135233 -TGAACGAAACGAGCAGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
840 CCG-ACGAAAC-AG-A----G-CGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGG
*
12135289 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTG
1 GATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTG
* * * *
12135354 CCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAGGACTTCATGTGAAGTTTCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
12135419 TGGCAAGACGACTC-ATTTTCTATTTTTCACGACTTTT-GAAACTTTTTACGGTTTGGTTTTTTT
131 TGGCAAGACGACTCGTTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTCGG-GTTTTT
* * *
12135482 TTAAAATTCTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTG
194 TTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * *
12135547 GCATGCACAATAAAATTCAGCTAAAAACTCAAAGAGTACAAGATTTTGTGACCATTTGAAAAAAG
259 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
12135612 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
324 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTA
* *
12135677 AGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
389 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * ** * *
12135742 CCCATTGTACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCACCGGAACCCTAATGTCGTCG
454 CCCATCGTACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCG
* *
12135807 GTCAGGTTCTCCGGTAATGCTCCAGCGATGGTGCCCCAACGAAGAAAAATGC-AGCACCAGCACA
519 GTCAGGTTCT-C--T-ATG----A-CGATGGTGCCCC-GCGAAGAAAAATGCGA-CACCAACACA
* * *
12135871 TGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGCACT
573 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
** * * ** *
12135936 GTGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGT-CGAGT
638 CCGTATGCGTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGT
* * * * * * * *
12136000 GCTCAACCGGCCAGAGGGTTGGGATGCCCAAGCTGAGGATCGGTCGGGTCCTCCTCTGTGTGCTA
703 GCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTA
* * *
12136065 TCGATCCTGCTGCCGCAACCCTCAGTCC
768 CCGATCCTGCTACCGCAACCCTCGGTCC
12136093 AGTCTGATTT
Statistics
Matches: 2276, Mismatches: 247, Indels: 95
0.87 0.09 0.04
Matches are distributed among these distances:
879 29 0.01
880 433 0.19
881 280 0.12
882 2 0.00
883 138 0.06
884 176 0.08
886 1 0.00
887 1 0.00
890 1 0.00
891 36 0.02
892 467 0.21
893 292 0.13
894 194 0.09
897 1 0.00
899 2 0.00
903 19 0.01
904 204 0.09
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGTTTTTTT
AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGTACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
CAGGTTCTCTATGACGATGGTGCCCCGCGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCGTAGA
CTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
GAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTAC
CGCAACCCTCGGTCCGGTCCGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACAGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGG
Found at i:12135953 original size:26 final size:26
Alignment explanation
Indices: 12135917--12135969 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12135907 CTGGTTCGAT
*
12135917 CTTAGACTGGGAATGCACTGTGTATG
1 CTTAGACTGGGAATGAACTGTGTATG
*
12135943 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTGTGTATG
12135969 C
1 C
12135970 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTGTGTATG
Found at i:12137086 original size:26 final size:26
Alignment explanation
Indices: 12137050--12137100 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12137040 GGTCTGATCC
12137050 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
12137076 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
12137101 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:12139322 original size:26 final size:26
Alignment explanation
Indices: 12139293--12139345 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12139283 CTCGTCCGAT
*
12139293 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12139319 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12139345 C
1 C
12139346 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12140751 original size:876 final size:863
Alignment explanation
Indices: 12138870--12142833 Score: 5147
Period size: 876 Copynumber: 4.5 Consensus size: 863
12138860 CGTTCAAGAA
* * *
12138870 TTTTTAAAATTTTTTTTGGAA-GA--TTT-GCCCCAAACTTGGAAGACGTGATCGTTGTATTTTT
1 TTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
12138931 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAATTGTACAAGATTTTGTGACCATTTGAAA
65 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
12138996 AAAGTGTCCCCATTTCAGACACTTCAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
12139061 TTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACC
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
12139126 AGCACCCATCGCACATCATGTGCGGACACCCCCCGGCCCCTCCGATCGTCGGAACCCCAAT---G
260 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCGCC-CCGATCGTCGGAACCCCAATGCCG
* * * **
12139188 CC-GTCA----ATT--A-GGTTCTCCGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAACA
324 CCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACA
* * * *
12139245 CATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTCGTCCGATCTTAGACTTGGAATGAA
389 CATGCCCGAGCCCAGTATGTGCTACCGCAACCCTCAG--TC-T--GATC-----C----AAT---
*
12139310 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
437 CT---TA-G---A-A-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGG
* *
12139375 GTACTCAACCGGCCAGAGGGGCGGGATACGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGC
493 GTACTCAGCCGGCCAGAGGGGCGAGATACGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGC
* * * *
12139440 TATCGATCCTGCTGCTGCAACCCGCGGTCTGGTCCAATCTTAGGCAAGGAATGAACTCCGTATGC
558 TACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACAAGGAATGAACTCCGTATGC
* *
12139505 CTAAGCCAACCGACGAAACGAGCGACCGGGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCT
623 CTAAGCCAACCGACGAAACGAGCGACCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
*
12139570 ATGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCTATTT
688 ATGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
*
12139635 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGAC
753 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
12139700 TTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGAT
818 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGAT
* * ** *
12139747 TTTTTAAAATTTTTACGAAAGGTTTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * * *
12139812 TTGGCATGCACAAAATAATTCAGCTAAGAACTCGAAGTGTACAAGATTTTATGACCCTTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
12139877 AAGTATCCCCATTTCAGATACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
12139942 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACTA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
12140007 GCACCCATCGCACATCATGTGCGCACACCCCCCGGTGCCCCGATGGTTGGAACCCCAATGCCACC
261 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCGCCCCGATCGTCGGAACCCCAATGCCGCC
* *
12140072 GGTCAGGTTCTTCGACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACA
326 GGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACA
*
12140137 TGCCCGAGCCCAGTAAGTGCTACCGCAACCCTCAGTCTGATCCAATCTTAGAATGGGAATGAACT
391 TGCCCGAGCCCAGTATGTGCTACCGCAACCCTCAGTCTGATCCAATCTTAGAATGGGAATGAACT
* * * * *
12140202 CTGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGTGCTCAGCCGACCAGAGGGGCGAGATG
456 CCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTACTCAGCCGGCCAGAGGGGCGAGATA
* * * * * * *
12140267 CGTAAGCCAGGGATTGGTCGAGTACCCCTCTGCGT-CTACCGATCCTGCTACCGTAACCCTCAGT
521 CGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGT
* * ** ** * *
12140331 TTGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC-AGCGAAATGAGCGGGT
586 CTGGTCCAATCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAAACGAGC----
* *
12140395 GGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGTTGCGCAAGCCATGGATCGATA-GGT
646 --G-A--C---CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATATGG-
* *
12140459 TGGTAGGTGGGTTTAGGCCCCATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCATGTAA
702 TGGTAGGTGGGTTTAGG-CACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAA
** *
12140524 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAACAAGACGACTCGTTTTATATTT
766 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
*
12140589 TTCACGATTTTTGAAA-ATTTTGCGGTTCGGTAT
831 TTCACGATTTTTGAAACTTTTTGCGGTTCGG-AT
*
12140622 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
12140687 TTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
66 TTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
12140752 AAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
12140817 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
12140882 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCGCCCCGATCGCCAGAACCCTAATGTCG
260 AGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCGCCCCGATCGTCGGAACCCCAATGCCG
* * *
12140947 CCGGTCAAGTTCTTCGACGATGCTTCGGCGATGGTGCCCCGACAGAAGAAAAATACGGCACCAGC
324 CCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGAC-GAAGAAAAATACGGCACCAAC
* *
12141012 ACATGCCCGAGCCCAGTATGTGCTACCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGA
388 ACATGCCCGAGCCCAGTATGTGCTACCGCAACCCTCAGTCTGATCCAATCTTAGAATGGGAATGA
**
12141077 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTACTCAGCCGGCCAGAGGGGC-AG
453 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTACTCAGCCGGCCAGAGGGGCGA-
* *
12141141 GATACGCAAGCCAGGGATCGGTCGGGTCCCCCTTTGCGTGCTACCGATCCTGCTGCCGCAACCCA
517 GATACGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCT
*
12141206 CGGTCTGGTCCAATCTTAGGCAAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
582 CGGTCTGGTCCAATCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* *
12141271 ACCGGGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGCTATGGATCGATATGGTGGTAGGTGG
647 ACCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATATGGTGGTAGGTGG
*
12141336 GTTTAGGCACATCTTCATATTTCTATGTGCCAATGCTATTTTTATGGCTTGTAAATTCATACAAT
712 GTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
12141401 GGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTT
777 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
12141466 TGAAACTTTTTGCGGTTCGGGAT
842 TGAAACTTTTTGCGGTTC-GGAT
* * * * * * *
12141489 TTTTTAAAATTTTTACGAAAGGATTTTTGGCCCCAAAATTGGTAGACATGACCCTCGTATTTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
12141554 -TGGCATGCACAAAAAATTTGAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
12141618 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * *
12141683 TTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCAATTTAAGGGCTAAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
12141748 GCACCCATTGCACATCATGTGCGCATACCCCCCGGC-CCCTGATCGTCGGAACCCCAATGCCGTC
261 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCGCCCCGATCGTCGGAACCCCAATGCCGCC
* * * * *
12141812 GGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCTCGACGAAGAAAATTACAGCACCAACACA
326 GGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACA
* *
12141877 TGCCCGAGCCCAGTATGTGC-AGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAAC
391 TGCCCGAGCCCAGTATGTGCTA-CCGCAA---------C---CC--TC--AGTCT--G-AT---C
* * *
12141941 TCAGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGAAGTGTGCGGG
433 -CA--AT-CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGG
* * * * * *
12142006 TGCTCAGTCGGCCAGAGGGGAGAGATGCGCAAGTCGGGGATCGGTCGGGT-CCCC-CT-C-TG--
494 TACTCAGCCGGCCAGAGGGGCGAGATACGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* * *
12142065 --CG----TGCT---GCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCC
559 ACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACAAGGAATGAACTCCGTATGCC
* * * * *
12142121 TAAGCCAACCGACGAAACAAGCGGTCGGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATA
624 TAAGCCAACCGACGAAAC--G-AG-C--GAC---CGGGCACTACGTCGGCCAGAGAGACGGGATG
* * * * * *
12142186 CGCAAGCCGTGGGTCGATA-GGATGGTAGGTCGGTTTAGGCACATCTTCTTATTTCTGTGAGCCA
680 CGCAAGCCATGGATCGATATGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCA
*
12142250 ATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
744 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
*
12142315 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCCGGAT
809 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-CGGAT
*
12142371 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTA-TTTTG
1 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * * *
12142435 TTTGGCAGGCATAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
66 -TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
*
12142500 AAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * *
12142565 TTTAAGGGGGTGCGAGTTCTTGAGGTATGATGAGGGATAGGGTGCCAATATAAGGGCCCAA-TAC
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CCAAGTAC
* * *
12142629 CAGCACCCATTGCACATCATGTGC-CACACCCCCCCGGCCCCCCCGATCG-CTAGAACCCCAATG
259 CAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CGCCCCGATCGTC-GGAACCCCAATG
* * * * * *
12142692 CCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTG-CTCGACGAAGAAAAATGCAGCACCA
321 CCGCCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCA
* * * * * * * *
12142756 CCACATGCCTGAGCCCAGCATGTGCTGCCGCCACCCTC-GCTCTGGTCCGATCTTAGACTGGGAA
386 ACACATGCCCGAGCCCAGTATGTGCTACCGCAACCCTCAG-TCTGATCCAATCTTAGAATGGGAA
12142820 TGAACTCCGTATGC
450 TGAACTCCGTATGC
12142834 TTAGACTGGG
Statistics
Matches: 2739, Mismatches: 260, Indels: 195
0.86 0.08 0.06
Matches are distributed among these distances:
858 26 0.01
859 2 0.00
861 2 0.00
862 48 0.02
863 130 0.05
864 109 0.04
865 202 0.07
866 132 0.05
867 134 0.05
868 6 0.00
869 2 0.00
870 6 0.00
871 1 0.00
872 4 0.00
873 66 0.02
874 6 0.00
875 148 0.05
876 338 0.12
877 81 0.03
878 174 0.06
879 97 0.04
880 254 0.09
881 9 0.00
882 251 0.09
883 211 0.08
884 57 0.02
885 61 0.02
886 1 0.00
887 9 0.00
888 97 0.04
889 2 0.00
890 73 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (863 bp):
TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCGCACACCCCCCGGCGCCCCGATCGTCGGAACCCCAATGCCGCC
GGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACA
TGCCCGAGCCCAGTATGTGCTACCGCAACCCTCAGTCTGATCCAATCTTAGAATGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTACTCAGCCGGCCAGAGGGGCGAGATA
CGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGT
CTGGTCCAATCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGACCG
GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATATGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTGCGGTTCGGAT
Found at i:12141959 original size:26 final size:26
Alignment explanation
Indices: 12141923--12141975 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12141913 CCGGTCCGAT
12141923 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
* *
12141949 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
12141975 C
1 C
12141976 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:12142836 original size:26 final size:26
Alignment explanation
Indices: 12142807--12142859 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12142797 CTGGTCCGAT
12142807 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12142833 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12142859 C
1 C
12142860 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12143675 original size:26 final size:26
Alignment explanation
Indices: 12143646--12143696 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12143636 CGGTCCGATC
*
12143646 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCATATGA
12143672 TTAGACTGGGAATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
12143697 CCTAACTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:12146173 original size:717 final size:713
Alignment explanation
Indices: 12144743--12146793 Score: 3071
Period size: 717 Copynumber: 2.9 Consensus size: 713
12144733 TTTTCTTCAC
* * * * * * *
12144743 CGGAGAACCTGACCGACAGCATTTGGGTTCTGACGATAGAGGGGGCCGGGGGGCTGTGCGCACAT
1 CGGAGAACCTGACCGGCAGCATTAGGGTTCCGACAATCGGGGGGGCCGGGGGGGTGTGCGCACAT
*
12144808 CATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
66 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * * *
12144873 ACTTACACCCCTTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCTAGTAGCCATTAAAGTGTC
131 ACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
12144938 TGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTTGCTGAATT
196 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
12145003 TTTTTGTGCATGCCACCAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCC
261 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAACTCCTTCC
* * * **
12145068 AAAAAAATTTTTAAAAATCCTGAACAGCAAAAAGTTTTAAAAAT-TGTGAAAAATAGAAAACGAG
326 GAAAAAATTTTAAAAAATCCT-AACCGCAAAAAGTTTCGAAAATCT-TGAAAAATAGAAAACGAG
* * *
12145132 TCGTCTTGCCATGAAACATCCCGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAA
389 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
12145197 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACG
454 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
12145262 GCATGCGCATCCCGTCTCTCTCGCAGACGTAGTGCCTGCCCGCTCGTCCGCTTGTTTTGTCGGTT
519 GCTTGCGCATCCCGTCTCTCTGGCCGACGTTGTGCCCGCCCGC-CGTCCGCTTGTTTTGTCGGTT
** * * * *
12145327 GGCTTAGGCATACGGAGTTTTTTCCCAGCCTAAGATCGGACCAGATCAAGGGTTGCGGCAGCACA
583 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGACAGCACA
* * * *
12145392 TGCTGGGCTCGGGCATGTGATGGTGCCGCATTTTTCTTCATCGGAGCACCATCGTTGGAGCATCG
648 TGCTGGGCTCGGGCATGTGATAGTGCCACATTTTTCTTCACCGGAGCACCATCGTTGAAGCATCG
12145457 T
713 T
* * *
12145458 CGGAGAACCTAACCGGCAGCATTGGGGTTCCGACAATCGGGGGGGTCGGGGGGGGTGTGCGCACA
1 CGGAGAACCTGACCGGCAGCATTAGGGTTCCGACAATCGGGGGGG-CCGGGGGGGTGTGCGCACA
* **
12145523 TGATGTGCGATGGGTACTGGTACTCAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
12145588 AACTCAAACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT
130 AACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
12145653 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
195 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
12145718 TTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACATCTACCCAGTTTGGGGCCAAAACTCCTT
260 TTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAACTCCTT
* *
12145783 CCGAAAAAATTTTAAAAAATCCCTTACCGTAAAAAGTTTCGAAAATCTTGAAAAATAGAAAACGA
324 CCGAAAAAATTTTAAAAAAT-CCTAACCGCAAAAAGTTTCGAAAATCTTGAAAAATAGAAAACGA
*
12145848 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
388 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
12145913 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
453 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
12145978 GGCTTACGCATCCCGTCTCTCTGGCCGACGTTGTGCCCGCCCGTCCGTCCGCTTGTTTTGTCGGT
518 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTTGTGCCCGCCCG-CCGTCCGCTTGTTTTGTCGGT
* * *
12146043 TGGCTTAAGCATACAGAGTTCATTCCCAGTC-AAGATCAGACCAGATCGAGGGTTACGACAGCAC
582 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGACAGCAC
*
12146107 ATGCTGGGCTCGGGGCATGTGCTAGTGCCACATTTTTCTTCACCAGG-GCACCATCGTTGAAGCA
647 ATGCTGGGCTC-GGGCATGTGATAGTGCCACATTTTTCTTCACC-GGAGCACCATCGTTGAAGCA
12146171 TCGT
710 TCGT
* * *
12146175 CGGAGAACCTGACCGGCGGCATTAGGGTTCCGACAATC-GGGGGGCTGGGGGGGTGTGCGCACAA
1 CGGAGAACCTGACCGGCAGCATTAGGGTTCCGACAATCGGGGGGGCCGGGGGGGTGTGCGCACAT
* *
12146239 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGA
66 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
12146304 ACTCAAA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTCA-CCATTAAAGTGT
131 ACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTGT
* *
12146367 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA---AAAT
195 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
**
12146429 TTTTTTACGCATGCCAACAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAACTCCTTC
260 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAACTCCTTC
* * * *
12146494 CGAAAAAATTTAAAAAAAAACCAAACCGCAAAAAGTTTCGAAAATCTTGAAAAATAGAAAATGAG
325 CGAAAAAATTT-TAAAAAATCCTAACCGCAAAAAGTTTCGAAAATCTTGAAAAATAGAAAACGAG
* *
12146559 TCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGCATGAATTTACAAG-CATAAA
389 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
12146623 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
454 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * * * **
12146688 GCTTGTGCATCCCATCTCTTTGGCCGGA-GTAGTATCCGCCCATCCGGCCGCCCGCTCGTTTCAT
519 GCTTGCGCATCCCGTCTCTCTGGCC-GACGT--TGT--GCCC-GCCCGCCGTCCGCTTGTTTTGT
*
12146752 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
578 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
12146794 GGACATGACT
Statistics
Matches: 1217, Mismatches: 103, Indels: 33
0.90 0.08 0.02
Matches are distributed among these distances:
709 93 0.08
710 157 0.13
711 24 0.02
713 49 0.04
714 117 0.10
715 124 0.10
716 260 0.21
717 386 0.32
718 7 0.01
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (713 bp):
CGGAGAACCTGACCGGCAGCATTAGGGTTCCGACAATCGGGGGGGCCGGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCCTAACCGCAAAAAGTTTCGAAAATCTTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGACGTTGTGCCCGCCCGCCGTCCGCTTGTTTTGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGACAGCACATGC
TGGGCTCGGGCATGTGATAGTGCCACATTTTTCTTCACCGGAGCACCATCGTTGAAGCATCGT
Found at i:12149976 original size:861 final size:858
Alignment explanation
Indices: 12146040--12151024 Score: 5845
Period size: 861 Copynumber: 5.7 Consensus size: 858
12146030 TTGTTTTGTC
* * * * * * *
12146040 GGTTGGCTTAAGCATACAGAGTTCATTCCCAGTC-AAGA-TCAGACCAGATCGAGGGTTACGACA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTC-GATCAGACCGAGGGTTGCGGCA
* ** * *
12146103 GCACATGCTGGGCTCGGGGCATGTGCTAGTGCCACATTTTTCTTCACCAGGGCACCATCGTTGAA
65 GCACATGCTGGGCTC-GGGCATGTGCTGGTGCTGCA-TTTT-TT-------G-A-CATCGTCGGA
* * * *
12146168 GCATCGTCGGAGAACCTGACCGGCGGCATT-AGGGTTCCGACAATCGGGGGGCTGGGGGGGTGTG
118 GCATCATCGGAGAACCTGACCGGCGGCATTGA-GGTTCCGACGATCGGGGGGCCGGGGGGTTGTG
* * *
12146232 CGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAAC
182 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAAC
* *
12146297 CTCGAGAACTCA-AACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTCA-CCATT
246 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATT
*
12146360 AAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
310 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* ** *
12146425 ---AAATTTTTTTACGCATGCCAACAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAA
375 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* ** * *
12146487 CTCCTTCCGAAAAAATTTAAAAAAAAACCAAACCGCAAAAAGTTTCGAAAATCTTGAAAAATAGA
440 CTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
* * *
12146552 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGCATGAATTTACAAG
505 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
12146617 -CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
570 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * ** *
12146681 ATCCACGGCTTGTGCATCCCATCTCTTTGGCCGGAGTAGTATCCGCCCATCCGGCCGCCCGCTCG
635 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACTAG--TCCACCCGCCCGCCCGCCCGCTCG
* * ** *
12146746 TTTCATC-AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACATGACTGAGGGT
697 TTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
* * * *
12146810 TGCAGT-AGGATTGACAGCACGCCGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCC
761 TGCAGTGAGGA-TGGCAGCACGCAGAGGGGGA-CCGATCGATCCCCAGCTTGCGCATCCCGCCCC
* * * * ** * * *
12146874 TCTGGCCGGCAGAAGGATCGGCAACACGTTTGTTTCATG
824 TCTGGTCGCCTG-A-G--CGCCCGCACGCTCGTTTCGTG
*
12146913 GGTTGACTTAGGCATA-GGAGTTCATTCCTAGTCTAAGCATGCGGTGTTCATTCCCAGTCTGAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-A--A------G---A----C--TC---GA
** *
12146977 TCAGACCGGATCGAGGGTTGCGATAGCACATGCTAGGCTCGGGCATGTGGTCTGGTG-TCGCATT
45 TCAGA-C----CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT-G-CTGGTGCT-GCATT
* *** * ** * * * *
12147041 TTTCT-TCA-CCAAGGCACCATCGCCGAAGAACCTGACCGGCGACATTGGGGTTCCGACAATC-G
102 TTT-TGACATCGTCGG-AGCATCATCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGG
*
12147103 GGGG-CGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCC
165 GGGGCCGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CC
12147166 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
229 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
12147231 GCTGCCAGCAGCCATTAAAGT-TCCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTG
294 GCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
12147295 TACACTTTGAGTTTGTAGCTGTATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTAC
358 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
12147360 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTC-A
423 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAA
* * * *
12147424 AAATCATGAAAAATAGAAAACGGGTCATTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
488 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * ** *
12147489 TTTTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACC
553 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
* * * ** * *
12147554 CACCTACCACCCTATCGGTTCACGGCTTGCACATCCTATCTCTCTGGCCGGC--GT--A-GCGCC
618 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACTAGTCCACCCGCC
* * * * *
12147614 CGCCCGTCCGCTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCATTCCCATTCTAAGATCAGA
683 CGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
12147679 CCAGACCGAGGG-T----T---G-TGGCAGCACTCAGA-GGGGACCGGACCGACCCCCAACTTGC
748 CCGGACCGAGGGTTGCAGTGAGGATGGCAGCACGCAGAGGGGGACC-GATCGATCCCCAGCTTGC
* *
12147734 GCATCCCGCCCCTCTGGTCGCCTGAGCGCCCGCATGCTTGTTTCGTG
812 GCATCCCGCCCCTCTGGTCGCCTGAGCGCCCGCACGCTCGTTTCGTG
* * *
12147781 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTCGATCGGACCGAGGGTTGTGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTCGATCAGACCGAGGGTTGCGGCAG
*
12147846 CACATGCTGGGCTCGGGGATGTGCTGGTG-TCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCT-GCA--TTT-TT--T----G-A-CATCGTCGGAG
* * * * *
12147910 CATCGTCGGAGAACCTGACTGACGGCATT-AGGGTTCCTACGATTGGGGGGGGCCGGGGGGTTTG
119 CATCATCGGAGAACCTGACCGGCGGCATTGA-GGTTCCGACGA-T-CGGGGGGCCGGGGGG-TTG
** * *
12147974 TGCGCACATGATGTATGATGGGTGCTGGTACATGGCCCTTACATTGGCCCCCTATCCCTCATCAA
180 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAA
*
12148039 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCAT
244 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
12148104 TAAAGTGTTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
309 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
12148169 AGCTGAATTTTTTTGTGCATTCCAAGAAAAATACAAGGATCTCGTCTACCAAGTTTGGGACCAAA
374 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
12148234 ACTCCTTCC-AAAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAG
439 ACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
12148298 AAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
504 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
12148363 GCCAT-AAAATGGCATTGGCACATAGAAATATGAATATGTGCCAAAACCCACCTACCACCCTATC
569 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
12148427 GATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCTGCCCGCCCACCCGCCCACCC
634 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC-TA--G--T------CCACCCGCCCGCCC
* * * ** *
12148492 GCTCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCGATTCTAAGATTGGACCCGA
688 GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * *
12148557 CCAAGGGTTGCGGCAGT-AGGATCGGCAGCACGCATAGGGGGACCCGATCGATCCCCGGTTTGCG
753 CCGAGGGTT---GCAGTGAGGAT-GGCAGCACGCAGAGGGGGA-CCGATCGATCCCCAGCTTGCG
* * *
12148621 TATCTCGCCCCTCTGGTCGCCTGAGCGCCCGCACGCTCGTTTCATG
813 CATCCCGCCCCTCTGGTCGCCTGAGCGCCCGCACGCTCGTTTCGTG
* * *
12148667 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTCGACCTGACCGAGGGTTGCTGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTCGATCAGACCGAGGGTTGCGGCAG
* * *
12148732 CACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTCGGAGC
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCTGCA--TTT-TT--T----G-A-CATCGTCGGAGC
* * * * *
12148797 ATCACCGGAGAACCTAACCGGCGGCATTGGGGTTCCAACGATCGGGCGGCCGGGGGGTTTGTGCG
120 ATCATCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGG-TTGTGCG
* *
12148862 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTTATCAAACCT
184 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCT
* * * *
12148927 CAATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTTGCCATTAAA
248 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
12148992 GTGTTTGGAATGGGGACACCTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCT
313 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
12149056 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAAATC
378 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
12149121 CTTCCCAAAAAATTTTGAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
443 CTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
12149186 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
508 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
** * * *
12149251 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGTCAAAACCCACCTACCACCTTATCGATC
573 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
12149316 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCACCCGCCCGCCCGCCCGCTCGTTT
638 CACGGCTTGCGCATCCCGTCTCTCTGGCCGAC-TAGT--CCACCCGCCCGCCCGCCCGCTCGTTT
* ** * * ** *
12149381 CGTCGATTGGCTTAGGCAAACAAAGTTCATTCCCAGTATAAGATTAGACCGGATTGAGGGTTACA
700 CGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCA
* * *
12149446 GTAGCAGGATCAGCAGCACGCAGAGGGGGACTCGATCGATCCCTAGCTTGGGCATCCCGCCCCTC
765 GT-G-AGGAT-GGCAGCACGCAGAGGGGGAC-CGATCGATCCCCAGCTTGCGCATCCCGCCCCT-
* * *
12149511 CTGGTCGCCTGAGCGCCCGCACACTCATTCCGTG
825 CTGGTCGCCTGAGCGCCCGCACGCTCGTTTCGTG
* *
12149545 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTCGACCAGACCGAGGGTTGGGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTCGATCAGACCGAGGGTTGCGGCAG
* * *
12149610 CACATGCTGGGCTCGAGCACGTGCTGGTGCTGCA-TTTTT-A-TTCGTCGGAGCATCATCGGAGA
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTTGACATCGTCGGAGCATCATCGGAGA
* * * * *
12149672 ACCTGACCAGCGGCATTGAGGTTCCGTCGATCGGGGGGGCCAGGGGG-TGTCCGTACATGATGTG
131 ACCTGACCGGCGGCATTGAGGTTCCGACGATC-GGGGGGCCGGGGGGTTGTGCGCACATGATGTG
* *
12149736 TGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCTATCCCTCATCAAACCTCAAGAACTCACA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12149800 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-GATAGCAATTAAAGTGTCTGAAAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTCTGAAAT
*
12149864 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
12149929 TGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTT-GGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
12149993 ATTTTAAAAAATCCCAAACTGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
12150058 GCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTGCAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12150123 TTGGCACACAGAAATATGAAGATGTGCCTAAATCCACTTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * *
12150188 CATCCCGTCTCTTTGGCCGAC--GT--A-ATGCCCGCCCGCCCACTCGTTTCGTCGGTTTGCTTA
649 CATCCCGTCTCTCTGGCCGACTAGTCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTA
* * * *
12150248 GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCTGCAAGAATGGC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-TG--AGGATGGC
** * * * * **
12150313 AGCACGCAGAGGGGGAACCGGCCAATACCCAGCTTACGCATCCCACCCCTCTGGTCGGTTTG-GC
776 AGCACGCAGAGGGGG-ACCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTC-GCCTGAGC
* * *
12150377 GCTCGCACGCTCGATCCGTG
839 GCCCGCACGCTCGTTTCGTG
* * * * *
12150397 GGTTGACTTTGGCATATGGAGTTCATTCCCAGTCTAAGA-TCAGATCGGACCGA-GGTTGCAGTA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTC-GATCAGACCGAGGGTTGCGGCA
* **
12150460 GCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAG
65 GCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCA-TTTT-TT-------G-A-CATCGTCGGAG
* * * * * * *
12150525 CATCACCGGAGAACCTGACCGACGGTATTGGGGTTCCTG-TGATAGGGGGGCCGGGGGGCTGTGC
119 CATCATCGGAGAACCTGACCGGCGGCATTGAGGTTCC-GACGATCGGGGGGCCGGGGGGTTGTGC
* *
12150589 ACACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
183 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACC
*
12150654 TCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
247 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
12150719 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGC
312 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
12150784 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAACTTTGGGGCCAAAACG
377 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* ** * ***
12150849 CCTTCGGAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGGAAATCGTGAAAAATAGAA
442 CCTTCCG-AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * *
12150914 AACGAGTCGTTTTGCCATGAAACTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGC
506 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
12150979 CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAAC
571 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
12151025 GCACACTCGT
Statistics
Matches: 3589, Mismatches: 391, Indels: 268
0.84 0.09 0.06
Matches are distributed among these distances:
841 11 0.00
842 1 0.00
843 35 0.01
844 2 0.00
845 1 0.00
847 1 0.00
848 6 0.00
851 41 0.01
852 106 0.03
853 126 0.04
854 10 0.00
855 5 0.00
856 7 0.00
857 117 0.03
858 332 0.09
859 1 0.00
860 2 0.00
861 351 0.10
862 58 0.02
863 46 0.01
864 61 0.02
865 100 0.03
866 3 0.00
867 191 0.05
868 49 0.01
869 169 0.05
870 1 0.00
871 3 0.00
872 56 0.02
873 95 0.03
874 8 0.00
875 3 0.00
876 2 0.00
877 127 0.04
878 121 0.03
881 3 0.00
882 68 0.02
883 74 0.02
884 318 0.09
885 105 0.03
886 291 0.08
887 114 0.03
888 7 0.00
889 117 0.03
890 187 0.05
892 2 0.00
894 7 0.00
898 9 0.00
899 32 0.01
900 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (858 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTCGATCAGACCGAGGGTTGCGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTTGACATCGTCGGAGCATCATCGGAGA
ACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACTAGTCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTGAGGATGGCAGCAC
GCAGAGGGGGACCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTCGCCTGAGCGCCCGCA
CGCTCGTTTCGTG
Found at i:12153865 original size:892 final size:891
Alignment explanation
Indices: 12151914--12160310 Score: 10292
Period size: 902 Copynumber: 9.4 Consensus size: 891
12151904 GTTAACTTAG
* * ** * **
12151914 GCATACGGAGTTCTTTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * * * *
12151979 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGCCACCATCACCGAAGCATTGCCGAAAA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
12152044 ACCTGACAGGCGGCATTAGGGTTCCAATGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
12152109 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
12152174 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12152239 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTCAGCTCAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
12152304 GCTTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAGAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* ** *
12152369 TTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
12152434 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** * * * **
12152499 TGGCATGCAGAAGTATGAAG-TGTCCCTAAACCCACCTACCACCGACTTCTCTTTCCACGGCTTG
586 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC--C-TATCGATCCACGGCTTG
* * * *
12152563 CACATCCCGTCTCTCTGGTCGACGTAGTGCCCGT-CCGCTCATTTTGTCGGTTGGCTTAGGCATA
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * * * *
12152627 CAAAGTTCATTCCCATTCTAAGA-CAGGA-CAGATCGAGGGTTGCGGGAGCAAGATCGACAGCAC
713 CGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * ** * * *
12152690 G-TGAAAGGGGACCCGACCAATCCTCGGCTTATGCATCCCGCCCCTCCGGCTGGCTGAGCGCACG
777 GCAG-AGGGGGACCCGACCGATCC-CCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
12152754 CACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
12152806 GCATATGGAGTTCATTCCCAATCTCAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* *** * * ** * **
12152871 CTCGGACATGTGCTGGTGTTGCATTTTTCTTTGTCAGGGCACCATTATCGGAGCATCACTAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
12152936 ACCTGATCGGTGACATTGGGGTTCCGACGAT-GGGGGGGTGGAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCG-GGGGGTGTGCGCACATGATGTG
*
12153000 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * * * *
12153065 ACCCCCTTGAGGAGCATTTGAGATTTTATAGGTTTGCTACCAATAGCCATTAAAGTGTGTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * **
12153130 GGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTCA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
12153195 TGCATGCCAACAGAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAATCCTTCTGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCTGAAAA
12153260 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
12153325 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTACGAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12153390 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGT
584 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
12153455 GCATCTCGTCTCTCTGGCCGACGTAGTGCCC-TCCGGCTCGTTTCCTCGGTTGGCTTAGGCATAC
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
12153519 GGAGTTCATTCCTAGTCTAAGATCGAACCAGACCAAGTGTTACGACAGCAGGATC-AGCAGCACG
714 GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACG
* **
12153583 CAGATGGGGACCC-ACCCGATCCCCTG-TTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGC
778 CAGAGGGGGACCCGA-CCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
12153646 ATGCTCGTTTCATGGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAA
841 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
12153697 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAATACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
12153762 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTAGGAGCATCGCCTGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
12153827 ACTTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGG-TCGGGGGGTGTGCGCACATGATGTG
* * * * *
12153892 CCAAGGGTGCTGGTACCTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
12153957 TCCCCCTTAAAGAGCATTTCAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12154022 GGGAACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
12154087 TGCATGCCAACAAAACTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * *
12154152 ATTTTAAAAAATCCAGAACTAG-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCT
455 ATTTTAAAAAATCCCGAAC-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12154216 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12154281 ATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGACCCACAGCTT
584 ATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
12154344 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACGTCCGCCCGTCCGCCCGCTCGTTT
647 GCGCATCCCGTCTCTCTGGCCGAC---GT----------A-GT--GCCCGT---CCCGCTCGTTT
* * * * *
12154409 CATCGATTGGCTCAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCG
693 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCG
* * * * * * * * *
12154474 ACAGCAAGATCGACAGTATGCATAGGGGGACCTGGCCGATCCCTGGCTTGCGCATCCCGCACCTC
758 GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCC-CGCTTGCGCATCCCGCCCCTC
** * * * * *
12154539 TGGCATGCTGAGC-ACCGACACGCTCGTTTTGTGGGATGACTTAGGCATACAGAGTTCATTCCTA
822 TGGCCGGCTGAGCGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
12154603 GTCTAA
886 GTCTAA
* * *** * *
12154609 GCTTATGGAGTTCATTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
12154674 CTCGGACATGTGTTGGTG-CAGCATTTTTCTTCGTCGGGGCACCATTGTCGGAGCGTCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
*
12154738 AACCTGACCGGCGGCA-TGAGGG-TTCAGGCGATC-GGGGGGTCGGGGGGGTGTGCGCACATGAT
130 AACCTGACCGGCGGCATTG-GGGTTTC-GACGATCGGGGGGGTC-GGGGGGTGTGCGCACATGAT
* * * *
12154800 GTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCATCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * *
12154865 CACACCCCTTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
12154930 AATTGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
12154995 TTTTGCGTGCCAACAAAAATACAAGTATCA-GATCTACCAAGTTTGGGGCCAAAAATCCCTTC-A
387 TTGTGCATGCCAACAAAAATACAAGGATCACG-TCTACCAAGTTTGGGGCCAAAACT-CCTTCTG
** ** * *
12155058 AAAAAATTTTAAAAAATCTTGAACCAAAAAAAGTTTCAAAATTCGTG-AAAATAGAAAACGAGTC
450 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
12155122 GTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
12155187 TGGCATTGGAACGTAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGC
580 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
12155252 TTGCGGATCCCGTCTCTCTGGCCGACGTAGTGGCCGTCCGCCCGCCCGCTCGCTCGTTTCGTTC-
645 TTGCGCATCCCGTCTCTCTGGCCGACGTA------GT--GCCCG-TC-C-CGCTCGTTTCG-TCG
* * * * * * *
12155316 GTTGGCTTAGGCATACGAAGTTCATTCCCACTCTAAGATCGGATCAGACTGAGGGTTACGGCAGC
698 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGC
* * * * *
12155381 AGGATTGGCAGCACGCAGAGGGGGACCCTACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTC
763 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCC
* * *
12155446 GGCTAAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAA
827 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
12155511 GCATACGGAGTTCATTCCCAGCCCAAGATTAGACTGCACCGAGGCTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
** *
12155576 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCA---TC---GC-T----GGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
12155630 ACCTGACCGACGGCATTGGGG-TTCTGACGATC-----GG--GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTTC-GACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTG
*
12155687 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
12155752 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12155817 GGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12155882 TGCATG-CAACAAAAATACAAGGATCACATCTACCATGTTT-GGGCCAAAACTTC-TCTCAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAA
* * ** * *
12155944 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * *
12156009 TGCCAGGAAACTTCACGTGAAGGCTTAAGAGACCATTCTATGAACTTACAAGGCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
12156074 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * ** *
12156139 GCATCCCGTCTCTCTGGCCGACGTAGTAACCG-CCCGCTCGTTTCGTTGGCCGGCTTAGGCATAT
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * * *
12156203 GAAGTTCATTCCCAGGCTAAGATTGGACCAGACCGAGGCTTGCGGCAACAGGATTGGCAGCACGC
714 GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* ** *** * * * *
12156268 A-AAGGGGACATGGTTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGTCAGCTGAGCGCCCGTAC
779 AGAGGGGGACCCGACCGATCCC-CGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
12156332 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
843 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12156381 GCATACAGAGTTCATTCCCAATCTAAGATCGGA-TTGA-CGAGGGTTATGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
*** * * *
12156444 CTTC-GGCATGTGCTGGTGCTGTATTTTTCTTCG-CTGGGGCACCATCGTCAGAGCATTGCCGAA
66 C-TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGA
* * * * * *
12156507 G-ACGTAACTGGTGGCATTGGGG-TTCTGGCGATCGGGGGGGACGAGGGGGTGTGCGCACATGAT
129 GAACCTGACCGGCGGCATTGGGGTTTC-GACGATCGGGGGGGTCG-GGGGGTGTGCGCACATGAT
* *
12156570 GTGTGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
12156635 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
12156700 AATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
12156765 TTGTGGATGCCAACAAAAATACAAGGATCACGTCTACCATGTTT-GGGCCAAAACTCCTTTTGCA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-A
* * *
12156829 AAAAAGTTTCAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
451 AAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
12156894 GTCTTGCCATGTAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * ** *
12156959 TGGAATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACTTGTCACCCTATCGATCCACAGC
580 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * ** * ** *
12157024 TTGTGCATCCTGTCTCTCTGGTTGATGTAGTGCCCG-CCCGCCCACTCGTTTTATTGGTTGGCTT
645 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCCG----CTCGTTTCGTCGGTTGGCTT
* * * ** * *
12157088 AGGCATACGGGGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTATGACAGCAGGATTGA
706 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
12157153 CAGTACGCAGAGGGGGACCCGATCAATCCTCGATTGCGTATCCCGCCCCTCTGGCCGGCTGAGCG
771 CAGCACGCAGAGGGGGACCCGACCGATCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
12157218 CCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
836 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12157274 G-AT-C--AG---ATT----G-----GATC-GA--GG--C-----TTATGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
12157313 CTCGAGCATGTGCTGGTTCCATATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * *
12157378 ACCTGATCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTGT
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
12157443 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
12157508 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATA
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12157573 GGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
12157638 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * *
12157703 TTATAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
12157768 CCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCAATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
12157833 T-GCA-ATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTACCGATCCACGTCTTGC
586 TGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
12157896 GCATCCCGTCTCTCTGGCCGGCATAATGCTCGCCCGCCCGTCGGCCCGCTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGT-A-G-T-----GCCCGT---CCCGCTCGTTTCGTCGGTTGG
* ***
12157961 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACTGAGGGTTGCCATAGC-GGA
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCAGG-
* * * * * * *
12158024 ATTGCCAGCACGTAGAGGGGGACCCGGA-TGATCCCCGACTTGCGCATCCCGTCGCTCCGGCCGG
766 ATCGACAGCACGCAGAGGGGGACCC-GACCGATCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
12158088 CTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
829 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12158151 -CATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * ** *
12158215 CTCGGGCATGTGCTGGTGCAACATTTTACTTTGCCGAGGCACCATCGCCAAAGCACCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
12158280 ACCTGACCGGCGGCGTTGCGGTTTCGGCGATCGGGGGGGCCAGGGGGTGTGCCCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
** **
12158345 GATGGGTGCTGGTACTTGGCCCTTATATTGATCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
12158410 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
12158475 GGTACACTTTTTTCAAATGATCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * **
12158540 GCATGCCAAAAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * *
12158605 TTTAAAAAAATCCTGAACCGCAAAAA-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
12158669 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAAAAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
12158734 TGGCACATAGAAATATCAAGATGTGCCTAAACCCACTTGCCACCCTATCGATTCACGGCTTGCGC
586 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * *
12158799 ATCCCATCTCTCTAGCTGACGCAGTGCCTGCCTGCCCACTCGTTTTGTTGGTTGGCTTAGGCATA
651 ATCCCGTCTCTCTGGCCGACGTAGTGCC--CGT-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
12158864 CGGAGTTCATTCCCAGTCAAAGATCGAATCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACG
713 CGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * * * *
12158929 TAGAGGGGGACCCGATCGATCCCCAACTTGCGCATCCCTCCCCTCTGGCCGACTGAGCGCCTGCA
778 CAGAGGGGGACCCGACCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
12158994 CGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12159044 GCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAGTGTTACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * * * * *
12159109 CTCGGGCATGTGCTGGTACCGTATTTTTTTTC-ACTGGGGCACCATTGTCGAAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
12159173 AACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCAAATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTG
* *
12159238 CGATCGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
12159303 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGAGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * **
12159368 GGGGAGACTTTTTTCAAATGGTAATGAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12159433 TGCATGCCAACAAAAATACAAGGATCGCATCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAA
* * *
12159497 AATTATAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* **
12159562 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGTAATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
12159627 ATCGG-A-ATGCAAAAATATGAAGATGTACCTAAA-CCACCTACCATCCTATCGATCCACGTCTT
584 ATTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
12159689 GTGCATCCCGTCTCTCTGGCCTGTATAGT-GCTCGCCCGCCCACCTGCCCGTTCGTTTCATCGGC
647 GCGCATCCCGTCTCTCTGGCC-G-A-CGTAG-T-GCCCG------T-CCCGCTCGTTTCGTCGGT
* * * * *
12159753 TGGCTTAGGGATACGGAGTTCATTCCCAGTCTAAGAT-TAGACTGGACTGAGGGTTGCGGTAGCA
700 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCA
* * ** *
12159817 AGAT-TAGCAGCATACAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC
764 GGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCG-CTTGCGCATCCCGCCCCTCTGGCC
* * * *
12159881 GGCTGAGCCCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAA
827 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12159946 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * * *
12160011 CTCAGGCACGTGCTGGTGCAACATTTTACTTCGTCGGGGCACCATCGCCAGAACATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * ** * * *
12160076 ACCTGACCGACAGCATTACGGTTTCGATGATC-GGGGGGCCGAGGGGGTGTGCGCACATAATGTG
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCG-GGGGGTGTGCGCACATGATGTG
* * *
12160140 CGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
12160205 TCCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12160270 GGGGACACTTTTTTCAAATGCTCAC-AAATCTTGTACACTTC
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
12160311 TGACCGGTGT
Statistics
Matches: 6540, Mismatches: 788, Indels: 345
0.85 0.10 0.04
Matches are distributed among these distances:
866 2 0.00
867 4 0.00
868 246 0.04
869 332 0.05
870 174 0.03
871 87 0.01
872 1 0.00
873 1 0.00
874 3 0.00
875 8 0.00
876 101 0.02
877 89 0.01
878 27 0.00
879 3 0.00
880 8 0.00
881 1 0.00
882 52 0.01
883 199 0.03
884 213 0.03
885 1 0.00
886 219 0.03
887 48 0.01
888 8 0.00
889 202 0.03
890 1 0.00
891 554 0.08
892 681 0.10
893 505 0.08
894 504 0.08
895 124 0.02
896 5 0.00
897 4 0.00
898 4 0.00
899 3 0.00
900 2 0.00
901 192 0.03
902 1132 0.17
903 9 0.00
904 1 0.00
905 2 0.00
907 6 0.00
908 2 0.00
909 1 0.00
910 160 0.02
911 406 0.06
912 213 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
AGGGGGACCCGACCGATCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12155106 original size:26 final size:26
Alignment explanation
Indices: 12155056--12155106 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
12155046 AAAATCCCTT
* *
12155056 CAAAAAAATTTTAAAAAATCTTGAAC
1 CAAAAAAAGTTTAAAAAATCGTGAAC
* *
12155082 CAAAAAAAGTTTCAAAATTCGTGAA
1 CAAAAAAAGTTTAAAAAATCGTGAA
12155107 AATAGAAAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.55, C:0.12, G:0.08, T:0.25
Consensus pattern (26 bp):
CAAAAAAAGTTTAAAAAATCGTGAAC
Found at i:12156384 original size:26 final size:26
Alignment explanation
Indices: 12156355--12156407 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12156345 GTTGACTTAG
* * *
12156355 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12156381 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12156407 G
1 G
12156408 ATCGGATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12156887 original size:27 final size:27
Alignment explanation
Indices: 12156829--12156887 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
12156819 TCCTTTTGCA
* ***
12156829 AAAAAGTTTCAAAAAATCCTGAACCGT
1 AAAAAGTTTCAAAAAATCATGAAAAAT
12156856 AAAAAGTTTC-AAAAATCATGAAAAAT
1 AAAAAGTTTCAAAAAATCATGAAAAAT
12156882 AGAAAA
1 A-AAAA
12156888 CGAGTCGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.58, C:0.12, G:0.10, T:0.20
Consensus pattern (27 bp):
AAAAAGTTTCAAAAAATCATGAAAAAT
Found at i:12159047 original size:26 final size:26
Alignment explanation
Indices: 12159018--12159070 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12159008 GTTGACTTAG
* *
12159018 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12159044 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12159070 G
1 G
12159071 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12162793 original size:26 final size:26
Alignment explanation
Indices: 12162764--12162816 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12162754 CTGGTCCGAT
12162764 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12162790 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12162816 C
1 C
12162817 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12162929 original size:26 final size:26
Alignment explanation
Indices: 12162857--12162930 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
12162847 CGTTCAGTCG
*
12162857 GCCAGAGGGGTGGGATGCACAAACCA
1 GCCAGAGGGGTGGGATGCGCAAACCA
* * *
12162883 GCCAGAGGGGCGGGATACGCAACCCA
1 GCCAGAGGGGTGGGATGCGCAAACCA
*
12162909 GCCAGACGGGTGGGATGCGCAA
1 GCCAGAGGGGTGGGATGCGCAA
12162931 GTCGAGGATC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.27, C:0.26, G:0.41, T:0.07
Consensus pattern (26 bp):
GCCAGAGGGGTGGGATGCGCAAACCA
Found at i:12164637 original size:26 final size:26
Alignment explanation
Indices: 12164608--12164660 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12164598 CTAGTCCGAT
12164608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12164634 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12164660 C
1 C
12164661 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12165573 original size:903 final size:899
Alignment explanation
Indices: 12163057--12167118 Score: 4896
Period size: 902 Copynumber: 4.6 Consensus size: 899
12163047 GGAAATGACC
* * *
12163057 GGCGGGCGGGCAGAGCCGGTGCACTACGTCAGCCAGAGAGACGAGATGATG-GCAAGCCATGGAT
1 GGCGGGCGGGCAG-G-CGG-GCACTACGCCGGCTAGAGAGACG-G--GATGCGCAAGCCATGGAT
*
12163121 CGATAGGGTGGTAGGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
60 CGATAGGGTGGTA-GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
12163186 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
124 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTT
** ** * ** *
12163251 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAATATTTTTTCCAAAGTA
189 TTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGA
12163316 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTA-TTTTGTTGGCATGCACAAAAAACATTCA
254 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAA-ATTCA
* * *
12163380 GCTAAAAACTCGAAGTGTATAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACT
318 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
* **
12163445 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCAAGTTCTCGA
383 TTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
12163510 GGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGT
448 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *** *
12163575 GCACACCGCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCACTACTCAGGTTCTCCGGTGAT
513 GCACA---CCCCCCAGCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * *
12163640 GCTCCGGTGATGGTGCCCCGCCGAAGAAAAATGCGGCACCAGCACATGCCGAAGCCCAGCATGTG
575 GCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCG-AGCCCAGCATGTG
* *
12163705 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG-----C--AT--TT---C-----
639 CTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
12163753 --G---T--T-TGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAACTGGCCAGAGGGGC
704 ATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* ** * *
12163810 GGGATGCACAAGCCGGGGATCGATCGGGTCC-CCTTCTGCATGCTGCCGATCCTGTTGCCACAAC
769 GGGATGCGCAAGCCAAGGATCGA-CGGGTCCTCC-TCTGCGTGCTGCCGATCCTGCTGCCACAAC
*** * * *
12163874 CCTCAGTCAATTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA
832 CCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACTGACGAAACGA
12163939 ACG
897 ACG
** * * * **
12163942 GGCGGGCGACCGGGCGGGCACTACGACCGGCCAGAGAGACGGGATGCTCAAGCTGTGGATCGATA
1 GGCGGGCGGGCAGGCGGGCACTACG-CCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATA
*
12164007 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG-CATTTTTATGGCTAGT
65 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * * *
12164071 AAATTCATACGATGGT-CCTTAAGCCTTTACGTGAAGTTTCATGGCAAGAGGA-TCGTTTTTCTA
130 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-CTTTTCTA
* ** * * *
12164134 GTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGAGTTTTTAAAATTTTTTCGAAAGGAGTTTT
194 TTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTT
*
12164199 GGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACACAAAAATTCAG-TAAT
259 GGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA-
* * *
12164263 AAACTCGAAGTGTACAAGATTTTGTAACCATTTGCAAAAAGTGTCCCCATTTCAGACACTTTAAT
323 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAT
* * *
12164328 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
388 GGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* ** *
12164393 GATGAGGGATAGGGGGCCAACT-TAAGGGCCAAGTACCAGCACCGATCGTGCATCATTTGCGCAC
453 GATGAGGGATAGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * *
12164457 ACCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAAGTTCTCCGGTGATGCTCC-
517 ACCCCCCAG-CCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCA
* * * ** * * **
12164521 GACAATGGTGCCCC-AGTGAAGAAAACTATGGTACCAGCACATGCCCGAGCTCAGCATGTGCTAT
581 G-CGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGC
*
12164585 CGTAACCCTTGGTCT-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
643 CGTAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * *
12164649 AACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTCAGCCGGCTAGA-GGGTGG
707 AACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * *
12164713 GATGCGTAAGCCAAGGATCGATCGGGTCCTCCTCTGTGTGCTGCTGATCCTGCTGCCGCAACCCT
771 GATGCGCAAGCCAAGGATCGA-CGGGTCCTCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCT
** * * * * *
12164778 CAGTCTGGTCTGATCTTAGACTAGGAGTGAACTCCGTGTGCATAAGCTAACTGACGAAACGAGCG
835 CAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACTGACGAAACGAACG
* * * *
12164843 GGCGGCCGGGCAGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCATGCCGTGGATCGATAG
1 GGCGGGCGGGCAGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
* * *
12164908 GGTGGCAGGTGGGTTTAGGCACAACTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTA
66 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * **
12164973 AATTCATATAATGGTCCCTTATAGCGTTCACGTGAAGTTTCATGGCAAGACGACTGGTTTTCTAT
131 AATTCATACAATGGTCCCTTA-AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTAT
* * * *
12165038 TTTTCATGATTTTCAAAACATTTTGCTGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTA
195 TTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTG
* * *
12165103 TCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
260 GCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
12165168 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAGGTGTCCCCATTTTAGACACTTTAATGG
325 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
*
12165233 CTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
390 CTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
12165298 TGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
455 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
12165363 ACCCAGCCTCCCGATCGCCGAAACCTCAATGCCGCCGGTTAGGTTCTCCGGCGATGCTCTAGCGA
520 CCCCAGCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCGA
* ** * * * * * * *
12165428 TAGTGCCTTGACGAAGAAAAATGCGACACCAGCTCATGCCTGATCCCAGAAAGTGCTGTCGAAAC
585 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGTAAC
* * *
12165493 CCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATTCTTAGACTGGGAATGAACT-TT
649 CCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGT
* * ** * * * * *
12165557 AGGCATAAGT-AGTCAAC--CACGAGCAT-CGGGCTGCTCAGCCGGCCA-A-AGG-TGGATGCG-
714 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * ** *
12165614 AA---AA-G-TCG-C-GGCCACTCC-CTGCACTCCTGCTGACTACCTGTCTTCTCACCTCCC-CT
778 AAGCCAAGGATCGACGGGTC-CTCCTCTGC-GTGCTGCCGA-T-CCTG-CTGC-CACAACCCTCA
12165670 GTC-GG----ATCTTAGACT-GGAATGAACTCCG--TGCCTAAGC-AA-T--CGAAATCG-A--
837 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACTGACGAAA-CGAACG
* ** *
12165719 GG-GGGCGGGCGGGTAGGCAC-ACGACCGGC-ATGAG-G-CGGTATGCG-AATGCCATGG-TCGA
1 GGCGGGCGGGCAGGCGGGCACTACG-CCGGCTA-GAGAGACGGGATGCGCAA-GCCATGGATCGA
**
12165777 TAGGGTGGTAAGGT-GGTTTA-GCACATCTT-ATA-TT-TGCATG-CAATGATTATTTTATATGG
63 TAGGGTGGT-AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG-CCATTTT-TATGG
* *
12165836 CTTGT-AATTCATATAAT-G-ACCTT-AG-C-TCA-GTG-A-TTTCAT-GCAAGA-GA-TCCTTT
125 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTTT
* * *
12165889 TCTA-TTTTCATGA-TTTCAAAAC-TTTTACCGTTTGGG-TTTTTTAAAATTTTTTTGGAAGGAG
190 TCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAG
** *
12165950 TTTTATCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGC
255 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGC
12166015 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
320 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
*
12166080 AATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
385 AATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
12166145 TTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACCTCATGTGCGC
450 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
12166209 ACACCCCCCAGCCCCTGCGATCGTC-AGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
515 ACACCCCCCAGCCCC-CCGATCGCCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
* * *
12166273 CCAGCGATGGTGCCCAGGCGAAGAAAAATACGGCACCAGCACATGTCCGAGCCCAGCATGTGCTG
578 CCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTG
* * * * * *
12166338 CCGTAACTCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAAACTGGGAATG
642 CCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
12166403 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
707 AACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
** * * * * * *
12166468 GATGCGCAAGCCGGGGATCGACTTGGT-CTCCCTCTACGTGCTACCAATCCTACTACCACAACCC
771 GATGCGCAAGCCAAGGATCGAC-GGGTCCT-CCTCTGCGTGCTGCCGATCCTGCTGCCACAACCC
* * ** * *
12166532 T-TGATCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCTAAAAGACAAAATGAA
834 TCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACTGACGAAACGAA
*
12166596 TG
898 CG
* * *
12166598 GGTGGGCGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
1 GGCGGGCGGGCAGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
**
12166663 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGTTATTTTTATGGCTTGTA
66 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
**
12166728 AATTCATACAATAATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATT
131 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATT
* * *
12166793 TTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGATTTTTGG
196 TTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGG
* * *
12166858 CCCCAAACTTGGTAGACATGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
261 CCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
12166923 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
326 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
12166988 TACT-GCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGA
391 TACTAG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * *
12167051 TGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCTATCGCAAATCTTGTGCGCACACC
455 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
12167116 CCC
520 CCC
12167119 TCCGACGATG
Statistics
Matches: 2748, Mismatches: 296, Indels: 249
0.83 0.09 0.08
Matches are distributed among these distances:
851 61 0.02
852 377 0.14
853 13 0.00
854 18 0.01
855 13 0.00
856 8 0.00
857 22 0.01
858 12 0.00
859 8 0.00
860 8 0.00
861 5 0.00
862 3 0.00
864 10 0.00
865 6 0.00
866 12 0.00
867 10 0.00
868 29 0.01
869 17 0.01
870 13 0.00
871 20 0.01
872 19 0.01
873 27 0.01
874 7 0.00
875 30 0.01
876 129 0.05
877 13 0.00
878 320 0.12
879 56 0.02
880 69 0.03
881 31 0.01
882 36 0.01
883 39 0.01
884 22 0.01
885 25 0.01
886 18 0.01
887 37 0.01
888 7 0.00
889 13 0.00
890 10 0.00
891 8 0.00
892 3 0.00
893 3 0.00
894 3 0.00
895 14 0.01
896 14 0.01
897 21 0.01
898 11 0.00
899 11 0.00
900 97 0.04
901 207 0.08
902 443 0.16
903 336 0.12
904 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (899 bp):
GGCGGGCGGGCAGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATT
TTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
TACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCAGCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCGAT
GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTGCCGTAACCC
TCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTAT
GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
CCAAGGATCGACGGGTCCTCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCTGGTCC
AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACTGACGAAACGAACG
Found at i:12166398 original size:26 final size:26
Alignment explanation
Indices: 12166362--12166414 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12166352 CTGGTCTGAT
*
12166362 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
*
12166388 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
12166414 C
1 C
12166415 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:12168119 original size:26 final size:26
Alignment explanation
Indices: 12168090--12168139 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12168080 TCGGTCTGAT
*
12168090 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
12168116 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
12168140 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:12168919 original size:26 final size:26
Alignment explanation
Indices: 12168883--12168935 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12168873 TCGGTCCAAT
*
12168883 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12168909 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12168935 C
1 C
12168936 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12169053 original size:185 final size:185
Alignment explanation
Indices: 12168724--12169094 Score: 413
Period size: 185 Copynumber: 2.0 Consensus size: 185
12168714 CTGATCCGAT
* * ** ** *
12168724 CTTATACTGGGAATGAACTCCGTATGCCTAAATCAAACCACGAAACAAGCGTGTGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAAACCACGAAACAAGCATACGGGCACTCAAT
* * * * ** *
12168789 CGACCAGAGGGGCGGGATGCACAAGTCGAGGATCGGTCGGGTCCCTCTCTGCGTGCTGTCGATCC
66 CGACCAGAGGGGCGGGATACACAAGTCGAGGATCGATCAGGTCCCTCTCTGCATGCTACCGATCA
** * * *
12168854 TACTACCACAACCCTTGGTTCGGTCCAATCTTATACTGGGAATGAACTCCGTATG
131 TACTACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
* * *
12168909 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACACATGAAACGAGCATACGGGCACTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAAAC-CACGAAACAAGCATACGGGCACTCAA
* * * * * *
12168973 TTGGCTAGAGGGGCGGGATACATAA-TCTGGGGATCGATCAGGTCCCTCTTTGCATGCTACCGAT
65 TCGACCAGAGGGGCGGGATACACAAGTC-GAGGATCGATCAGGTCCCTCTCTGCATGCTACCGAT
* * ** *
12169037 CATGCTGCTGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
129 CATACTACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
12169094 C
1 C
12169095 CTAAGCCAAC
Statistics
Matches: 151, Mismatches: 33, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
184 5 0.03
185 146 0.97
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAAACCACGAAACAAGCATACGGGCACTCAAT
CGACCAGAGGGGCGGGATACACAAGTCGAGGATCGATCAGGTCCCTCTCTGCATGCTACCGATCA
TACTACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
Found at i:12169808 original size:26 final size:26
Alignment explanation
Indices: 12169772--12169825 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
12169762 CTGGTCCGAT
*
12169772 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12169798 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12169824 CT
1 CT
12169826 GATTCTGCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12171189 original size:26 final size:26
Alignment explanation
Indices: 12171160--12171212 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12171150 CTGGTCCGAT
12171160 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
** *
12171186 CTTAGGTTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12171212 C
1 C
12171213 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12172959 original size:26 final size:26
Alignment explanation
Indices: 12172930--12172982 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12172920 CCAGTCCGAT
*
12172930 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12172956 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12172982 C
1 C
12172983 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12174766 original size:26 final size:26
Alignment explanation
Indices: 12174728--12174780 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12174718 TCAGTCCGAT
* *
12174728 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
12174754 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
12174780 C
1 C
12174781 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:12177424 original size:26 final size:26
Alignment explanation
Indices: 12177395--12177447 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12177385 CCGGTCCAAT
*
12177395 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12177421 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12177447 C
1 C
12177448 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12177617 original size:903 final size:902
Alignment explanation
Indices: 12170820--12180559 Score: 12664
Period size: 903 Copynumber: 10.9 Consensus size: 902
12170810 ACACCGGTCA
12170820 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
12170885 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGAGTGAGTTCTCGAGGTTTGGTGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
* *
12170950 GGATAGGGGGCCAACATAAGGGGCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-
* ** ** * * * *
12171015 CGGCCCCCCCGATC-ATCGGAACCGTAATGCTACCGGTCAGGTTCTCTGACGATGTTCTGGCGAT
195 CGGCCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* *** * *
12171079 GGTGCCCC-AGCGAAGTAAAATGTTGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAAC
259 GGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * ** *
12171143 TCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGTTGGGAATGAACTCTG
323 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
*
12171208 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGC
388 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * * ** * *
12171273 AAGTCGGGGATCAGTCGGGTCCCCCTCTGTGTGCTGCTGATCTTGCTACCACAACCCTCAGTCCG
453 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTG
* * * *
12171338 ATCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGATGAAACGAACGGGCAGGT
518 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGC
* * * * * * *
12171403 GGACGGGCGAGCACTATGTAGGCCAGAGAGACGGGATGCACAAGACGTGGATCGATAGGATGGTA
582 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * **
12171468 GGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATTACTT-TAAATTCAT
647 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
12171532 ACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATA
712 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * *
12171597 ATTTTTGAAACTTTTTACGGTTTGGGATTTTTTATAATTTTTTCGAAAAGAGTTTTGGCCCCAAA
777 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * *
12171662 CTTGGTAGATGCGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTC
842 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
** *
12171723 GAAGTGTACAAGATTTCATGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
12171788 TGGCAGCAAACCTGTAAAATCTCAAATGCT-TTCTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAGTTCTAGAGGTTTGATGA
* * * * *
12171852 GGGATAGGGGGCTAATTTAAGGGCCAAGTACCAGCATCGATCGCACATCATTTGCGCACACCCCC
130 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* ** *
12171917 CGGCCCCCCCGATCG-TCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACAAT
195 CGGCCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * * * * *
12171981 GGTGCCCC-AGTGAAGAAAACTACGGTACCAGCACATGCCCGAGCTCAGCATGTGCTACCGTAAC
259 GGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
12172045 CCT---T---G---G-TC-----C-----A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCG
323 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
12172084 TATGCCTAAGTCAACCCATGGAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGAGGCAGGATGCGC
388 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
** * * * * ** * * *
12172149 AAGTTGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGTCACATCCCTCAGTCCG
453 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTG
** * * **
12172214 ATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAC-AAA--A-C--G-AGTT
518 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCG
* * * * * * *
12172272 GGCAGGCGGGCACTGCGTCAGCGAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGCAA
583 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
12172337 GTGGGTTTAGGCACATCTTGATATTTCTACGTGCCAATGCCATTTTTATGGCTTTTTAATTCATA
648 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
12172402 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
713 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * *
12172467 TTTTTGAAA-TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
778 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
*
12172531 TTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAACTC
843 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* ** * *
12172590 AAAGTCAACAAGATTTTGTGATCATTTGAAAAAAGTGTACCCATTTCAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
12172655 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGA
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGA
** *
12172719 GGGATAGGGGATCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCC
130 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* * * * ** * ** *
12172784 CCGGCCCCCCCGATCACCGAAATCGTAACGCCGCCGGTCAGGTTCTCCGACGATGCTTTGGCGAT
194 CCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * * *** * * *
12172849 GGTGCCCCGGCAAAGTAAAATGTTGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGTAACC
259 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * *
12172914 CTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAACTCCAT
324 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * *
12172979 ATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAGGGGCGGGATGCGCA
389 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * ** *
12173044 AGTCGGGGATC-ATCCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTATCGCAACCCTCGGTCTG
454 AGCCGGGGATCGGT-CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTG
*
12173108 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCCGGC
518 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-CGGC
* * * * * * *
12173173 GGGCGGGTGAGCATTATGCCGGCCAGAGAGACGGGATACGCAAGACGTGGATCGATAGGGTGGTA
582 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
12173238 GGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATTGCTTGTAAATTCAT
647 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* **
12173303 ACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA
712 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * ** *
12173368 ATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTATAATTTTTTCAAAAAGAGTTTTGGCCCCAAA
777 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
12173433 CTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAACAATTCAGCAAAAAACTC
842 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTC
* * * *
12173494 AAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACTCTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
12173559 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
* *
12173624 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCATGTGCGCACACCCCCT
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-
* * * * *
12173689 CGGCCCCCCCGATTGCCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGATGATGCTCCGACGATG
195 CGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* * * * **
12173754 GTGCCCCGGCAAAGAAAAATACGGAACCAGCACATGCCCGAGCCCAGCATGTGCTGTCATAACCC
260 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * *
12173819 TCGGTCCAGTCCGATCTTTGACTGGGAATGAACTCTGTATGCTTAGACCT-GGAATGAATTTCGT
325 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-CTGGGAATGAACTCCGT
* * *
12173883 ATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATACGCA
389 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * *
12173948 AGCCGAGGATCGGTCGGGTCCCCCTCTGCGTACTGTCGATCCTGCTACCGTAACCCTCGGTCCGG
454 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGA
* * * * * *
12174013 TCTGATCTCAGACTGAGAATGAACCCCGTATGCCTAAGCCAACCAAC-AAA--A-C--G-AGTGG
519 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGG
* * * * *
12174071 GCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGCAAG
584 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* ** *
12174136 TGGGTTTAGGTACATCTTCATATTTCTTTGTGCCAATTCCATTTTTATGGCTTGTAAATTCATAC
649 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
12174201 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
714 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * *
12174266 TTTTGAAACTTTTTACGGTTCAGGATTTTTTGAAACTTTTTGCAGAAGGAGTTTTGG-CCCAAAC
779 TTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* *
12174330 ATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
843 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
** *
12174390 GAAGTGTACAAGATTTCATGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
12174455 TGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
* *
12174520 GGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
** * * * *
12174585 GGCCCCCCCGATCGCCAGAACCCCAATGCCACCGGTCAGGTTGTTCGACGATGCTCTGACGATGG
196 GGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * ** * *
12174650 TGCCCCGGCGAAGAAAAATACGACACCAGCACATGCCTAAGCCCAGCATGTGCTGTCGTAACCCT
261 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * *
12174715 CGGT-CAGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTTCGTAT
326 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
12174779 GCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAG
391 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * ** * *
12174844 CCAGGGATCGGCCGTGTCCCCCTTTGCGTGCTGCCAATCCTGTTGCCACAAGCCTCGGTCTGGT-
456 CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGATC
* * *
12174908 TCAATCTTAGCCTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA-----------G
521 T-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGG
* *
12174962 C-AGCGGGTACTACGTCGGCCAGAGAG-CTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
585 CGGGCGGGCACTACGTCGGCCAGAGAGAC-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
12175025 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGCCTAGTAAATTCATAG
649 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
12175090 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCCTGGCAAGACGACTCGTTTTCTATTTTTCATGAT
714 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
12175155 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-AAGAGGATTTTTGG-CCCAAAC
779 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA-AGGAGTTTTGGCCCCAAAC
*
12175218 ATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
843 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
12175278 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
12175343 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCA-AGGTTTGATGA
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGA
*
12175407 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACA-----
130 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
12175467 ----CCCCCCGATCG-TCGGAACCCCAATGCCGCCGGTCAGGTTCT-------T-CT--G-CGAT
195 CGGCCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* ** * *
12175516 GGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGTCGCAACC
259 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * * *
12175581 CTCGATTCGGTCTGATCTTGGGCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGT
324 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * * *
12175646 ATGCCCATGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGAGGTGGGATGGGCA
389 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * *
12175711 AGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGGCAATCCTGCTGCCGTAACCCTCAGTCTGA
454 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGA
* * * *
12175776 TATGATCTTAGAGTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCG
519 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCG
* * * *
12175841 GGCGGACGGGCACTACGTCGGCCAGAGAGACGGGGTCCGCAAGCCGTGGATCGATAGGGTGGTGG
583 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
12175906 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
648 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
12175971 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACGACTCGTTTTCTATTTTTCATGA
713 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * *
12176036 ATTTTGAAACTTTTT-CTGGTTCAGGATTTTTTAAAATTTTTT-TGAAGGGAGTTGTGGCCCCAA
778 TTTTTGAAACTTTTTAC-GGTTCGGGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAA
* * * *
12176099 ACTTGGTAGATC-TGATACTTGAATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTC
841 ACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
12176161 GATGTGTACAAGATTCTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
12176226 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCA-AGGTTTGATGA
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGA
12176290 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----
130 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* *
12176350 ---CCCCCTCGATCG-TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGAT
195 CGGCCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * * *
12176411 GGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCTGCAACC
259 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
** ** * * * *
12176476 CTCCATCCGGTTTGATCTTAGACTAGGAATGAACTCCATTTTCTTAGACTGGGAATGAACTCCGT
324 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * ** *
12176541 ATGCCTAAGTCAACCCACGAAACAAGCGAGCGGGCGCTCAGCTGG-TTGAAGGGGCGGGATGCGT
389 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCGGGATGCGC
* * * * *
12176605 AAGCCGGGGATTGGTCAGGTCCCCCTCTACGTGCTGCTGATCCTACTGCCGTAACCCTCGGTCTG
453 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTG
** * * *
12176670 ATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGCAGGC
518 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGC
* * * * *
12176735 AGACGGGCGGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTA
582 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
12176800 GGTGGGTTTAGGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
647 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * * * *
12176865 ACAGTGGTCCCTTAAGCCTTCATGTGAAGTGTCATGGCAAGATGACTCGTTTTTTATTTTTGACG
712 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* ** * * * *
12176930 ATTTTCGAAAGC-TTTTGGGGTTCGAGATTTTTTTAAATTTTTTGGGAAGGATTTTTGGCCCCAA
777 ATTTTTGAAA-CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
** * *
12176994 ACTTGGTAGACACGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTTAGCTAAAAACTC
841 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTC
* ** *
12177057 GAAGTGTTCAAGATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAT
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
12177122 TGGCTGGAAACCTGTAGAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
* *
12177187 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACA-CATGTGTGCACACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * * ** *
12177251 GGCCACCCCGATTGCTAGAACACCAACGCCGTTGGTCAGGTTCTCCGACGATGCTTCGACGATGG
196 GGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * * *
12177316 TGCCCCGACGAAGAAAAATACGGCAACAGCACATGCCCGAGCCCAGCATGTCCTACCGCCACCCT
261 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
12177381 CAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTAT
326 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
12177446 GCCTAAGTCAACCCACAAAATGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
391 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* ** * * * * * *
12177511 CCGGGGATTGGTCGGGTCCCCCTCTGTTTGCTGTCGATCCTGCTACCGTGACCCTCAGTTTGGTC
456 CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGATC
* * *
12177576 TGATCTTAGACTGCGAATGAACTCCGTATGCCTATGCCAACCTACGAAACGAGCGGGCGG-GAAG
521 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCG--G
*
12177640 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGG
584 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
12177705 TGGGTTTAGGCACATCTTCATACTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
649 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
12177770 AATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGTCTCGTTTTCTATTTTTCATGAT
714 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
12177835 TTTTGAAACTTTTTACGGTTCGGGATTTATTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACA
779 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-
* * * *
12177900 TT-TTAGATGTGATTCTTGTATTTTTGTTGTCATGCACAAAAAAATTCAGCTAAAAACAT-
843 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TC
12177959 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
12178024 TGGCAAG-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGA
66 TGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGA
* ** *
12178088 GAGATAGGGGGCCAATATAAAAGCCAAGTACCAGCACCCATCCCACATCATGTGCGCACACCCCC
130 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * *
12178153 CGGCCCCCTCTATCGTTGGAACCCCAATGCCACCGGTCAGGTTCT-C--C---G----G-CGATG
195 CGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* * *
12178207 GTGCCCTGACGATGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCT
260 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * * **
12178272 TCGGTCCGGTTCAATCTTAGACTGGAAATGAACTCCTTATGCTTAGACTGGTAATGAACTTTGTA
325 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * *
12178337 TGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCATAAGGGCGGGATGCGCAT
390 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * * * * *
12178402 GCCGGGGATCGGCCGTGACCCCCTCTACGTGTTGCCGATCCTGCTGTCGCAACCCTCAGACCGAT
455 GCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGAT
* * * **
12178467 CCGATCTTAGACTGGGAATGATCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCAGGTTG
520 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGG
* * * *
12178532 GCGGGCGGGCACTACGCCGACCAGAGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGG
584 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* **
12178597 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGAAAATTTTT-TGGCTTGTAAATTCATA
649 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG-CCATTTTTATGGCTTGTAAATTCATA
* * *
12178661 CAATGGTGCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCATGA
713 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
** * * *
12178726 TTTTTGAAACTTTTTGGGGTTCGAGATTTTTTAAAATTTTTTTC-GAAAGAGTTTCGGCCCCAAA
778 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * * *
12178790 CTTGGTAAACGTGATCCATGTATTTTTTTTGGCATGCACAAAAAATTTCAGC-AAGAAACAC
842 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA-AAACTC
*
12178851 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
12178916 TGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
*
12178981 GGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *
12179046 GGCTCCCCCC-ATCG-TCGGAACCCCAATGCCGTCGG-CTAGGTTCTCCGGCGATGCTCCGACGA
196 GGC-CCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTC-AGGTTCTCCGACGATGCTCCGACGA
* ** * *
12179108 TGGTGCTCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCCCAAC
258 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
** * * *
12179173 CCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTACG
323 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
12179238 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGTGCGTGATGCAC
388 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
*** * * * * * *
12179303 AAGTTAGGGATCGATCGGGTGCCCCTCTGCATCCTGCCGATCCTGCTGCC-TCGACCCTTGGTCT
453 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGT-AACCCTCGGTCT
* * * * * * *
12179367 GGTCCGATCATAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGAC
517 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGC
* * * * * *
12179432 GGGCGGACGGGTACTATGCCGGCCAGAGAGACGGGATGTGCAATCCGTGGATCGATAGGGTGGTA
582 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
12179497 GGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
647 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
12179562 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATG
712 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * * * *
12179627 ATTTTTGAAACCTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGGACGAGTTTTTGTCCCAAA
777 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* ** *
12179692 CTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATTTACAGAAAAATTCAGCTAAAAACTC
842 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
12179753 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
12179818 TGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
12179883 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA------
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * *
12179942 ----CCCCCGATCGCCGGAACCCTAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACGATGG
196 GGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * * * * *
12180003 TGCCCTGACGAAGAAAAATGCGACACTAGCACATGCCCGAGCCCAGCATGTGCTGCTGGAA-CC-
261 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
12180066 C--T-C-G---G-TC-TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
326 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
12180122 GCTTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGTGATGTGCAAG
391 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * ** *
12180187 CCTGGTATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTATTGCCGCAACCCTCGGT-TCGAT
456 CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCT-GAT
* * ** *
12180251 CTGATCTTAGATTGGGAATGAAGTTTGTATGCCTAAGCCAACCGACAAAACGAGC--G-GGCGGG
520 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGG
* * * * *
12180313 CGGGCGGACACTACGCCGGCCAGAGAGACAGCATGCGCACGCCGTGGATCGATAGGGTGGTAGGT
585 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** *
12180378 GGGTTTAGGCACATCTTCATATTTCGGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
650 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * * * *
12180443 ATGGTTCCTGAAGCATTCACGTGAAGTTCCATGGCAGGATGACTCGTTTTCTATTTTTCACGATT
715 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
**
12180508 TTTGAAAC-TTTTGGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
780 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
12180560 CTCCCCACGA
Statistics
Matches: 7784, Mismatches: 904, Indels: 324
0.86 0.10 0.04
Matches are distributed among these distances:
867 175 0.02
868 376 0.05
869 290 0.04
870 2 0.00
871 3 0.00
872 2 0.00
873 1 0.00
874 1 0.00
875 3 0.00
876 175 0.02
877 42 0.01
878 193 0.02
879 37 0.00
880 1 0.00
881 202 0.03
882 227 0.03
883 248 0.03
884 41 0.01
887 3 0.00
888 267 0.03
889 206 0.03
890 3 0.00
891 16 0.00
892 871 0.11
893 31 0.00
894 380 0.05
895 677 0.09
896 639 0.08
897 28 0.00
898 3 0.00
899 1 0.00
900 3 0.00
901 14 0.00
902 935 0.12
903 1180 0.15
904 505 0.06
905 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
GGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGATC
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGC
GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
Found at i:12179226 original size:26 final size:26
Alignment explanation
Indices: 12179190--12179242 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12179180 CCGATCCGAT
12179190 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTAC-GTATG
12179216 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
12179242 C
1 C
12179243 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:12180102 original size:26 final size:26
Alignment explanation
Indices: 12180073--12180126 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
12180063 ACCCTCGGTC
12180073 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
12180099 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
12180125 TA
1 TA
12180127 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:12182453 original size:26 final size:26
Alignment explanation
Indices: 12182417--12182469 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12182407 CCAGTTCGAT
*
12182417 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
12182443 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
12182469 C
1 C
12182470 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:12183352 original size:26 final size:26
Alignment explanation
Indices: 12183314--12183364 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12183304 CTGGTTTGAT
*
12183314 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
*
12183340 CTTAGACTGGGAATGAACCCCGTAT
1 CTTAGACTAGGAATGAACCCCGTAT
12183365 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:12183758 original size:898 final size:896
Alignment explanation
Indices: 12180691--12185507 Score: 5761
Period size: 897 Copynumber: 5.5 Consensus size: 896
12180681 CCGGTCCGAT
* *
12180691 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
* * * *** *
12180756 CGGCCAGAGGGGCGGGATGCTCAAGCCGGGGATCGGTC-GAGTCCCCCTCTGCATGCTG-CGGAT
66 CGACCAGA-GGGCGGGATGCGCAAGCTGGGGATCAACCGGA-TCCCCCTCTGCGTGCTGTC-GAT
* * *
12180819 CCTGCTGCCGC-ACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
128 CCTGCTG-TGCAACCCTCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
12180883 TACCGA-GGAA--A------CGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
192 AACCGACGAAATGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
12180939 AGATCGATAGGGTGGTAAGTGGGTTTAGGCACATTTTCATATTTCTACGTGCCAATGCCATTTTT
257 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
*
12181004 ATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
322 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** *
12181069 GTTTTCTATTTTTCATGATTTTCAAAACTTTTT-TCAGTTCGGGATTTTTTAAAATTTTTTTC-G
387 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTC-GTTCAGGATTTTTTAAAA-TTTTTTCGG
*
12181132 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAA
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
12181197 TTCGGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCGCATTTCAGA
515 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
12181262 CACTTTAATGGCTACTGGCATCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTC
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
12181327 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCAT
645 TCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGCACACATCAT
* * *
12181392 GTGCGCACAC-CCCCCC-G-CCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCG
710 GTGCGCACACACCCCCCGGCCCCCCCGATCGCCAGAAACCCCAATGCCGCCGGTCAGGTTCT-CG
* ** *
12181453 ACGATGCTCC-GACGATGGTGCCCC-AGCGAAGAAAAATGCTACACCAACACATGCCCGAGCGCA
774 ACGATGCTCCTG-CGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAACACATGCCCGAGCCCA
*
12181516 GCATGTGCTGC-CGCAACCCT-A----G---G-TC-----C---G---G---TCCG-AT-
837 GCATGTGCTGCTCGTAACCCTCATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
12181550 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTTAA-CAACAAAACGAGCGTACGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
* ** **** *
12181614 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTTGGGTCCCCCTCTGCGTGC--T-G---C
66 CGACCAGA-GGGCGGGATGCGCAAGCTGGGGATCAACCGGATCCCCCTCTGCGTGCTGTCGATCC
** * * * *
12181673 --C-GT--AACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATACCTAAGCCAAC
130 TGCTGTGCAACCCTCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
12181733 CGACGAAACGAACGGGCGCGCGGGCTGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAG
195 CGACGAAATG-A-----G-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * * *
12181798 CCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCAA
253 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
12181863 TTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
318 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * *
12181928 ACTCGTTTTCTATTTTTCATGATTTTTGAAACCATTTGTGGTTCGGGATTTTTTAAAATTTTTTC
383 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTCGTTCAGGATTTTTTAAAATTTTTTC
* *
12181993 GGAGGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAA
448 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
12182058 AATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
513 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
12182123 GACACTTTAATGGCTGCTGGTAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGT
578 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
12182188 TCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCGTTGCACA-A
643 TCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCC--AGCACACA
* * * * * *
12182252 -CATGTGCGCACACCGCCCCCCGGCCCTCCCGATC-CCCGAAACCCCAATGCTGTCGATCAGGTT
706 TCATGTGCGCACA-CACCCCCCGGCCCCCCCGATCGCCAGAAACCCCAATGCCGCCGGTCAGGTT
* **
12182315 CTCCGGCGATGCTCC-GACGATGGTGCCCC-ACTGAAGAAAAATGTGGCACCAACACATGCCCGA
770 CT-CGACGATGCTCCTG-CGATGGTGCCCCGAC-GAAGAAAAATACGGCACCAACACATGCCCGA
* ** * *
12182378 GCCCAGCATGTGCTGC-CGTAAGCCTCGGCCCAGTTCGATCTTAGACTGGGAATGAACTCCGTAT
832 GCCCAGCATGTGCTGCTCGTAACCCTC-ATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTAT
12182442 G
896 G
* * * * * * * *
12182443 CTTAAACTGGGAATGAACTCCGTATGCCTGAGTCAACCGATAAAAC-ATTCGTGCCGATGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA-GCGTGCGGGTGCTCAG
* * ** * * * * *
12182507 CCGGCCAGAGGGGGGGATGCATAAGCCGGGCATCATCCGGGTCCCCCTCTGCGTGCTGCCGATCC
65 CCGACCAGAGGGCGGGATGCGCAAGCTGGGGATCAACCGGATCCCCCTCTGCGTGCTGTCGATCC
* * * * *
12182572 TGCTGCTACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCTGTATGCCTAAGCCAA
130 TGCTG-TGCAACCCTCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
12182637 TCGACGAAACGA-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGTTGCACAAGCCATGG
194 CCGACGAAATGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
12182701 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCGAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
** * *
12182766 GGCTTGTAAATTCATACAACAGTCCCCTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
*
12182831 TTTCTATTTTTCATGATTTTTGAAACTTTTTGTCGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
389 TTTCTATTTTTCATGATTTTTGAAACTTTTTGTCGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
*
12182896 AGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
12182960 GCTAGAAACTTGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
12183025 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
12183090 GGTTTGACGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGCACACATGATGTGC
649 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGCACACATCATGTGC
* * * *
12183155 GCACACACCCTCCCTGGCCCCCCCGATCGTCAG-AACCCCAATACCGTCAGTCAGGTTCTCCGAC
714 GCACACACCC-CCC-GGCCCCCCCGATCGCCAGAAACCCCAATGCCGCCGGTCAGGTTCT-CGAC
* ** * * *
12183219 GATGCTCCTGCGATGGTGCCCTGACGAAGAAAAATGTGGCATCAACACATGCCAGAGCCCAGTAT
776 GATGCTCCTGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCAT
* *
12183284 GTGCTGCT-GTAACCCTCGATCTGGTTTGATCTTAGACTAGGAATGAACTCCGTATG
841 GTGCTGCTCGTAACCCTC-ATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATG
* * ** *
12183340 CTTAGACTGGGAATGAACCCCGTATACCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
* * * *
12183405 CGACCAGACGGACGGGATGGGCAAG-TCGGGGATCAACCGGATCCCCCTCTGTGTGCTGTCAATC
66 CGACCAGA-GGGCGGGATGCGCAAGCT-GGGGATCAACCGGATCCCCCTCTGCGTGCTGTCGATC
* * *
12183469 CTACTGCTGCAACCCTCAGTATGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTG-TGCAACCCTCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
12183534 ACCGACGAAATGA-GCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
193 ACCGACGAAATGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* ** * *
12183598 GATCGATAGGGTGGTAGCTGGGTTTAGGTGCATCTTTATATTTCTACGTGCCAATGCCATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
12183663 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
12183728 TTTTCTATTTTTCATAATTTTTGAAACTTTTTGTGGTTCAGGATTTTTAAAAATTTTTTCAGAAG
388 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGTCGTTCAGGATTTTTTAAAATTTTTTCGGAAG
* * * * *
12183793 GATTTTTAGCCCCATACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATCCACAAAAAAATTC
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* **
12183858 AGCTAAAAAATCGAAGTGTACAAGATTTTGCAACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
12183923 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
12183988 AGGTTTGATGAGGGATAAGGGGCCAATGTAAGGGCCAAGAACCAGCACCCATCGCACATCATGTG
648 AGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGCACACATCATGTG
* * * * *
12184053 CG--CACACCCCCCGGCCCCCCCGATCACCAG-AGCCCCAATGCCACCGGCCAGGTTCTCTAGCG
713 CGCACACACCCCCCGGCCCCCCCGATCGCCAGAAACCCCAATGCCGCCGGTCAGGTTCTCGA-CG
* * * *
12184115 ATGCTTCGGCGATGGTGCCCCGATGCAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATG
777 ATGCTCCTGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATG
* * *
12184180 TGCT-ATCGTAACCTTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCCGTATG
842 TGCTGCTCGTAACCCTCA-TCCGGTTTGATCTTAGACTGGGAATGAAC-TCCGTATG
* * * * *
12184236 CTTTAGACTGGGAATGAACTTCGTATGCCTAGGTCAACCCACAAAACGAGTGTGCAGGTACTCAG
1 C-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAG
* * * ** * *
12184301 CCGGCCAGAAGGGTGGGATGCGCAAGCTGAGGATTGACCGGGTCACCCTCTGCGTGC--T-G---
65 CCGACCAG-AGGGCGGGATGCGCAAGCTGGGGATCAACCGGATCCCCCTCTGCGTGCTGTCGATC
* * * ** * *
12184360 -T-C-GT--AACCCTTGGTTTGGTTCGATAATAGACTGGGAATGAACTTCATATGCCTAAGCCAA
129 CTGCTGTGCAACCCTCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
12184420 CCGACGAAATGAACGGGTGGGCGGGCGGGCGGGCTCTACGTCGACCAGAGAGACGGGATGCGCAA
194 CCGACGAAATG-A------GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* **
12184485 GCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTACATGCCAA-GAAA
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
12184549 TTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
12184614 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGCTTTAGGATTTTTTAAAATTTTT
382 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTCG-TTCAGGATTTTTTAAAATTTTT
* * * * *
12184678 TCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTGTTCGCTTGCGCAAA
446 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
*
12184743 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGT-CCCATT
510 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
12184807 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAATCTCAAATGCTTTTTAAGGGGGTGT
575 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
12184872 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCCCA
639 GAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGCACA
* * * *
12184937 CATCTTATGCGCACA-ACTCCCC-G-CACCCCGATCGCC-GAAACCCCAATGCCGCCGGTCAGGT
704 CATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGCCAGAAACCCCAATGCCGCCGGTCAGGT
* *
12184998 TCTC--CGA------T--GATAGTGCCCCGACGAAGAAAAATACGGCACCAACACATTCCCGAGC
769 TCTCGACGATGCTCCTGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGC
*
12185053 CCAGCATGTGCTG-TCGCAA-CC-C-T-C-G---G----T---C------TG-A-TCCG-AT-
834 CCAGCATGTGCTGCTCGTAACCCTCATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATG
* *
12185090 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
* ** * * * *
12185155 CGACCAAAGGGGCGGGATGCGCAAGCTGGGGATCGGCTGTATCCCCCTCTGCATGCTATCGATCC
66 CGACCAGA-GGGCGGGATGCGCAAGCTGGGGATCAACCGGATCCCCCTCTGCGTGCTGTCGATCC
* * * * *
12185220 GGTTGTCGCAACCCTCGATATGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAA
130 TGCTGT-GCAACCCTCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
12185285 CAGATGAAACGAGCTGATGGGCGGGCGGGCGAGCACTACGCCAGCCAGAGATACGGGATGCACAA
194 CCGACG-AA--A--TGA--GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
** * * *
12185350 GCTATGGATCGGTAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCA
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
12185415 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
12185480 GAATCGTTCTCTATTTTTCATGATTTTT
382 GACTCGTTTTCTATTTTTCATGATTTTT
12185508 TTTAAAATAT
Statistics
Matches: 3452, Mismatches: 384, Indels: 237
0.85 0.09 0.06
Matches are distributed among these distances:
847 52 0.02
848 3 0.00
849 1 0.00
850 1 0.00
851 1 0.00
852 2 0.00
853 100 0.03
854 1 0.00
855 4 0.00
856 5 0.00
858 74 0.02
859 36 0.01
862 9 0.00
863 455 0.13
864 3 0.00
865 156 0.05
866 96 0.03
867 111 0.03
868 2 0.00
869 1 0.00
870 2 0.00
872 1 0.00
873 1 0.00
875 1 0.00
876 2 0.00
877 3 0.00
879 1 0.00
880 1 0.00
881 60 0.02
882 1 0.00
885 59 0.02
886 1 0.00
887 1 0.00
888 2 0.00
889 4 0.00
890 1 0.00
891 6 0.00
892 250 0.07
893 320 0.09
894 43 0.01
895 139 0.04
896 200 0.06
897 591 0.17
898 400 0.12
899 185 0.05
901 1 0.00
902 1 0.00
903 1 0.00
904 1 0.00
905 60 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
CGACCAGAGGGCGGGATGCGCAAGCTGGGGATCAACCGGATCCCCCTCTGCGTGCTGTCGATCCT
GCTGTGCAACCCTCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAATGAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTTGAAACTTTTTGTCGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGCACACATCATGTGCGC
ACACACCCCCCGGCCCCCCCGATCGCCAGAAACCCCAATGCCGCCGGTCAGGTTCTCGACGATGC
TCCTGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCT
GCTCGTAACCCTCATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:12184250 original size:28 final size:27
Alignment explanation
Indices: 12184210--12184263 Score: 99
Period size: 28 Copynumber: 2.0 Consensus size: 27
12184200 CGGTCTGATC
12184210 TTAGACTGGGAATGAACTTCCGTATGCT
1 TTAGACTGGGAATGAACTT-CGTATGCT
12184238 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
12184264 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 7 0.27
28 19 0.73
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (27 bp):
TTAGACTGGGAATGAACTTCGTATGCT
Found at i:12186633 original size:26 final size:26
Alignment explanation
Indices: 12186603--12186655 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12186593 ATTGACTTAG
12186603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12186629 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12186655 G
1 G
12186656 ATCTGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12188727 original size:840 final size:850
Alignment explanation
Indices: 12186660--12190779 Score: 4339
Period size: 876 Copynumber: 4.7 Consensus size: 850
12186650 TCTAAGATCT
* * * * * * * * *
12186660 GATCGGACCGAGGCTTGTGGTAGCACATGCTGGGCTTGGGTATGAGTTGGTGCAGCATTTTTCTT
1 GATCGGACTGAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTT
* * * ** *
12186725 CATCCGGGCACCATCGTCGGAGCATCGTC-AGAGAACCTGACTAGCGGCATTAGGGTTCCGATGA
66 CGTCGGGGCACCATCGTCGAAGCATCGTCGA-AGAACCTGACCGGCGGCATTAGGGTTCCGACGA
* *
12186789 TCGGGGGGGCCGGGGTGGGTGTGCGCACATGATGT-CTGTTGGGTGCTGGTACTTGGCCCTTATA
130 TC-GGGGCGCC-GGG-GGGTGTGCGCACATGATGTGC-GATGGGTGCTGGTACTTGGCCCTTATA
12186853 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
191 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
12186918 CAGGTTTCCTGCCAGTAGCCATTAATGTATCTGAAATGGGGATACTTTTTTCAAAGGGTCATAAA
256 CAGGTTTCCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGATACTTTTTTCAAAGGGTCATAAA
12186983 ATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCAC
321 ATCTTGTACACTTCGAG-TTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCAC
12187048 GTCTACTAAGTTTGGGGCCAAAAATCCTTTCGTAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
385 GTCTACTAAGTTTGGGGCCAAAAATCCTTTCGTAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
12187113 TTTAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
450 TTTAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
12187178 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
515 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
*
12187243 AAACCCACCTACCAACCTAGCGATCCACGGCTTGCGCAT-CCTGCCTCTCTGGCCGACGTAGTGC
580 AAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCT-CCTCTCTGGCCGACGTAGTGC
*
12187307 CCGCCCGCCTGCCCACCCACTCGTTTCATCGGTTGGCTTAGGCATATGGAGCTCATTCCCAGTCT
644 CCGCCCGCCTACCCACCCACTCGTTTCATCGGTTGGCTTAGGCATATGGAGCTCATTCCCAGTCT
*
12187372 AAGATCGGACCGAACTGAGGGTTACGGTAGCAGGATCGATAGCACACAGAGGGGTACTCGACCAA
709 AAGATCGGACCGAACTGAGGGTTACGATAGCAGGATCGATAGCACACAGAGGGGTACTCGACCAA
* * *
12187437 TCCCTGGCTTACGCATCTCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGA
774 TCCCCGGCTTACACATCTCGCCCCTCTGGTCAGCTGAGCACCCGCACGCTTGTTTCGTGGG-TGA
12187502 CTTAGGAATACGGAGTTCATTCCCATTCTAAGATTG
838 --T----AT----AG--------CA-TC----ATTG
12187538 GATCGGACTGAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTT
1 GATCGGACTGAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTT
* * * *
12187603 CGTCGGGGCACCATTGTCGAAGCATCGTCGAAGAACTTGACCGACGGCATTAGGGTTCCGGCGAT
66 CGTCGGGGCACCATCGTCGAAGCATCGTCGAAGAACCTGACCGGCGGCATTAGGGTTCCGACGAT
* **
12187668 TGGGGCGCCGAGGGCCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
131 CGGGGCGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
12187733 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
195 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
12187798 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG-TCACTTTTTTCAAATGGTCACAAAATC
260 TTTCCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGAT-ACTTTTTTCAAAGGGTCATAAAATC
* *
12187862 TTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTG
324 TTGTACACTTCGAGTTTT-AGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * * * *
12187927 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATACCGAACCG-TAAAATTTT
388 TACTAAGTTTGGGGCCAAAAATCCTTTCGTAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* **
12187991 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTTATGAAACTTCACGTGAAGGCTTAAGGGA
453 -AAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
12188056 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCACATAGAAATATGAAGATGTGCCTAA
517 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAA
* *
12188121 ACCCACCTACCAACCTATTGATCCATGGCTTGCGCATCCCTCCTCTCTGGCCGACGTAGTGCCCG
582 ACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCTCCTCTCTGGCCGACGTAGTGCCCG
* * * * * *
12188186 CCCGCCTACCCACCCGCTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCGTTCCTAGTCTAAG
647 CCCGCCTACCCACCCACTCGTTTCATCGGTTGGCTTAGGCATATGGAGCTCATTCCCAGTCTAAG
*
12188251 ATCGGACCGAACTGAGGGTTACGATAGTAGGATCGATAG-ACACAGAGGGGTACTCGACCAATCC
712 ATCGGACCGAACTGAGGGTTACGATAGCAGGATCGATAGCACACAGAGGGGTACTCGACCAATCC
12188315 CCGGCTTACACATCTCG-CCCTCTGGTCAGCTGAGCACCCGCACGCTTGTTTCGT-GG-G-T-T-
777 CCGGCTTACACATCTCGCCCCTCTGGTCAGCTGAGCACCCGCACGCTTGTTTCGTGGGTGATATA
12188374 G-A-C-TTG
842 GCATCATTG
12188380 GATCGGACTGAGGGTTGCGGTAGCACATACTGGG-TCGGGCATGTGTTGGTGCCGTATTTTTCTT
1 GATCGGACTGAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTT
* * * * *
12188444 CGTCGGGGCACCATCGTCAAAGCATCGCCGAAGAACCTGACCGGCGGTATTGGGGTTCCGACCAT
66 CGTCGGGGCACCATCGTCGAAGCATCGTCGAAGAACCTGACCGGCGGCATTAGGGTTCCGACGAT
* *
12188509 CGGGGCACCGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
131 CGGGGCGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
12188574 CCCCTATCCCTCATCAAACCAT-AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
196 CCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
12188638 TTTCCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGATACTTTTTTCAAAGGGTCATAAAATCT
260 TTTCCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGATACTTTTTTCAAAGGGTCATAAAATCT
* *
12188703 TATACACTTCGAGTTCTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
325 TGTACACTTCGAGTT-TTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
12188768 ACTAAGTTTGGGGCCAAAAATCCTTTCGTAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTA
389 ACTAAGTTTGGGGCCAAAAATCCTTTCGTAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTA
12188833 AAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
454 AAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
12188898 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATTTGCCTAAAC
519 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAAC
* * *
12188963 CCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT-CTCTCTGGCCGGCGTAGTGCCCGC
584 CCACCTACCAACCTATCGATCCACGGCTTGCGCATCCC-TCCTCTCTGGCCGACGTAGTGCCCGC
* * * * * ** *
12189027 CCG------------CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATGCTTGCCTAAGA
648 CCGCCTACCCACCCACTCGTTTCATCGGTTGGCTTAGGCATATGGAGCTCATTCCCAGTCTAAGA
* * * * ** * * * *
12189080 TTGGACC-AGACCGCGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCC
713 TCGGACCGA-ACTGAGGGTTACGATAGCAGGATCGATAGCACACAGAGGGGTACTCGACCAATCC
* * ** * * * * * **
12189144 CTGGCTTGCGTA-CCCGCCCCTCTGGCCGGTTGAGTACCCGCACGCTCATTTCGTGGGTTGACT-
777 CCGGCTTACACATCTCGCCCCTCTGGTCAGCTGAGCACCCGCACGCTTGTTTCGTGGG-TGA-TA
12189207 TAGGCATACGGAGTT-
840 TA-GCAT-C--A-TTG
* * * ** * * *
12189222 CATTCCCAGTCTAAGCATACGGAGTT-CATTCCAAGTCTAAGATCGGATGAGACCGAGGGTTGTG
1 GA-T--CGGACT--G---A-GG-GTTGCGGT---AG-C----A-C--AT---A-C-TGGGCT-CG
** * **** * * * ** * * * ** * *
12189286 GTAGCACATGCTGG-GCTCGGGCATGTGTTGGT-GCCGCATTTTTCTTCGCCGGGGCACCATCGC
39 G--GCATGTGTTGGTGC-CGTATTTTTCTTCGTCGGGGCA----CCATCGTCGAAGCATCGTCG-
* * * * * * *
12189349 CAGAGAACCTAATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTCCGCCCATG
96 -A-AGAACCTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGCGCCGGGGGGTGTGCGCACATG
* *
12189414 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCCAGAA
158 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
12189479 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCT
223 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTATCT
* * * * *
12189544 GAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
288 GAAATGGGGATACTTTTTTCAAAGGGTCATAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTA
* * * * * *
12189609 TTTTGTGCATGCCAAAAAAAATACAACGATCACATCTTCCAAGTTTGGGGCAAAAAAT-CTTTCC
352 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTT-C
** * ** * * * * * *
12189673 AAAAAAATTTTAAAAATTCTTGAACCGTAAAAAGTTTTGAATATTGTAAAAAATAGAAAACGAGT
416 GTAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTAAAAATCGTGAAAAATAGAAAACTAGT
*
12189738 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAA
480 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * *
12189803 ATGGCATTGGCACGCA-AAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
545 ATGGCATTGGCACATAGAAA-TATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACG
* * * * *
12189867 GCTTGCGCATCCCGT-CTCTCTGGCTGGCGTAGTGCCTGCCCG----CCCGCCCGCTCGTTTCAT
609 GCTTGCGCATCCC-TCCTCTCTGGCCGACGTAGTGCCCGCCCGCCTACCCACCCACTCGTTTCAT
* * * * * ** * **
12189927 CGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTATATGATCAAACC-AGACTGAGGGTTGCGGC
673 CGGTTGGCTTAGGCATATGGAGCTCATTCCCAGTCTAAGATCGGACCGA-ACTGAGGGTTACGAT
* * ** ** * * * * *
12189991 AGCACGATTGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC-T-TC-CCCCT-TG
737 AGCAGGATCGATAGCACACAGAGGGGTACTCGACCAATCCCCGGCTTACACATCTCGCCCCTCT-
* * *
12190052 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
801 GGTCAGCTGAGCACCCGCACGCTTGTTTCGTGGG-TGA--T----AT----AG--CA-T--CA--
12190117 CTAAGAATACGG
848 -T-----T---G
* * *
12190129 AGTTCATTCCCAATCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 -G----------ATC---G---GA--C---T-GAGGGTTGCGGTAGCACATACTGGGCTCGGGCA
* * * * * * ** *
12190194 TGTGTTGGTGCCGCATTTTTCTTCGCCAGGGAACCATC-ACCAGAGCATCACCGGAGAACCTGAC
43 TGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGA-AGCATCGTCGAAGAACCTGAC
* * ** * *
12190258 TGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCAGGGGTGGGTGTGCGCACATGATGTGCGATGG
107 CGGCGGCATTAGGGTTCCGACGATC-GGGGCGC-CGGG-GGGTGTGCGCACATGATGTGCGATGG
* * *
12190323 GTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACAACCCA
169 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
12190388 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
234 TTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGAT
* * * * * * * *
12190453 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTGGCTGAATTTTTTTCTGCAAG
299 ACTTTTTTCAAAGGGTCATAAAATCTTGTACACTTCGA-GTTTTAGCTGAATTATTTTGTGCATG
* * ** ** * *
12190518 CCAACAAAAATAAAAGGGTCACGTCTAGAAAGTTTGGTTCCAAAACTCC-TTCTGAAAAAATTTT
363 CCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTTC-GTAAAAATTTT
* * * *
12190582 AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAA-TGAGTCGTCTAGCCA
427 AAAAAATCCCGAACCGCAAAAAGTTT-AAAAATCGTGAAAAATAGAAAACT-AGTCGTCTTGCCA
* *
12190646 TGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGG
490 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** *
12190711 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
555 CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATC
12190776 CCTC
620 CCTC
12190780 ATCAAACCTT
Statistics
Matches: 2787, Mismatches: 312, Indels: 266
0.83 0.09 0.08
Matches are distributed among these distances:
827 1 0.00
828 75 0.03
829 60 0.02
830 2 0.00
832 1 0.00
834 2 0.00
836 1 0.00
837 1 0.00
839 1 0.00
840 465 0.17
841 106 0.04
842 38 0.01
843 3 0.00
845 4 0.00
847 2 0.00
849 1 0.00
850 1 0.00
851 4 0.00
852 3 0.00
854 2 0.00
855 1 0.00
858 1 0.00
859 1 0.00
860 1 0.00
862 2 0.00
863 1 0.00
865 1 0.00
866 1 0.00
867 3 0.00
868 2 0.00
869 2 0.00
870 6 0.00
871 17 0.01
873 2 0.00
874 47 0.02
875 52 0.02
876 557 0.20
877 48 0.02
878 392 0.14
879 187 0.07
884 1 0.00
885 40 0.01
886 2 0.00
887 104 0.04
891 1 0.00
894 1 0.00
895 1 0.00
896 40 0.01
897 9 0.00
898 429 0.15
899 14 0.01
902 15 0.01
903 5 0.00
904 2 0.00
905 4 0.00
906 1 0.00
910 2 0.00
912 1 0.00
913 1 0.00
915 1 0.00
917 2 0.00
918 3 0.00
920 3 0.00
921 4 0.00
922 1 0.00
923 1 0.00
925 1 0.00
926 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (850 bp):
GATCGGACTGAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTT
CGTCGGGGCACCATCGTCGAAGCATCGTCGAAGAACCTGACCGGCGGCATTAGGGTTCCGACGAT
CGGGGCGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTCCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGATACTTTTTTCAAAGGGTCATAAAATCTT
GTACACTTCGAGTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
TAAGTTTGGGGCCAAAAATCCTTTCGTAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAA
AATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
ACCTACCAACCTATCGATCCACGGCTTGCGCATCCCTCCTCTCTGGCCGACGTAGTGCCCGCCCG
CCTACCCACCCACTCGTTTCATCGGTTGGCTTAGGCATATGGAGCTCATTCCCAGTCTAAGATCG
GACCGAACTGAGGGTTACGATAGCAGGATCGATAGCACACAGAGGGGTACTCGACCAATCCCCGG
CTTACACATCTCGCCCCTCTGGTCAGCTGAGCACCCGCACGCTTGTTTCGTGGGTGATATAGCAT
CATTG
Found at i:12189246 original size:26 final size:26
Alignment explanation
Indices: 12189210--12189262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12189200 GTTGACTTAG
*
12189210 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12189236 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12189262 G
1 G
12189263 ATCGGATGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:12190133 original size:26 final size:26
Alignment explanation
Indices: 12190097--12190148 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12190087 TGACTTAGGC
*
12190097 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
12190123 ATACGGAGTTCATTCCCAATCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
12190149 TCGGACCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGA
Found at i:12190486 original size:898 final size:888
Alignment explanation
Indices: 12188389--12190777 Score: 3436
Period size: 898 Copynumber: 2.7 Consensus size: 888
12188379 GGATCGGACT
* * *
12188389 GAGGGTTGCGGTAGCACATACTGGG-TCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGC
1 GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGC
* * * * *
12188453 ACCATCGTCAAAGCATCGCCGAAGAACCTGACCGGCGGTATTGGGGTTCCGACCATC---GGGGC
66 ACCATCGCCAGAGCATCACCG-AGAACCTGA-CGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
*
12188515 ACCGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
129 A-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
12188580 TCCCTCATCAAACCAT-AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCT
193 TCCCTCATCAAACC-TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * * *
12188644 GCCAGTAGCCATTAAAGTATCTGAAATGGGGATACTTTTTTCAAAGGGTCATAAAATCTTATACA
257 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
12188709 CTTCGAGTTCTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACTAAG
322 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAG
* *
12188774 TTTGGGGCCAAAAATCCTTT-CGTAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTAAAAA
387 TTTGGGGCCAAAAAT-CTTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA
* *
12188837 TCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
451 TAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** *
12188902 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATTTGCCTAAACCCAC
516 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
*
12188967 CTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCT
581 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCT
* * ** * *** *
12189032 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATGCTTGCCTAAGATTGGACCAGACCGCGGG
646 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGCATAAGATCAAACCAGACCGAGGG
* * *
12189097 TTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGTACCCGCC
711 TTGCGGCAGCACGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTA-CCGCC
* *
12189162 CCTCTGGCCGGTTGAGTACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
775 CCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* **
12189227 CCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATGAGACC
840 CCAGTCTAAGAATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGACC
*
12189276 GAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGC
1 GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGC
* *
12189341 ACCATCGCCAGAG-A--ACC--TAA--T--CGACGGCATTGGGGTTCCGACGATCGGGGGGGC-C
66 ACCATCGCCAGAGCATCACCGAGAACCTGACGGCGGCATTGGGGTTCCGACGATCGGGGGGGCAC
* * *
12189396 GGGGGGTGTCCGCCCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCC
131 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
12189461 CTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
196 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
12189526 GTAGCCACTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
261 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
12189591 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAACGATCACATCTTCCAAGTTTG
326 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTG
* * * ** * * * *
12189656 GGGCAAAAAATCTTTCCAAAAAAATTTTAAAAATTCTTGAACCGTAAAAAGTTTTGAATATTGTA
391 GGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATAGTG
12189721 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
456 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
12189786 ATTTACAAGCTATAAAAATGGCATTGGCACGCA-AAATTATGAAGATGTGCCTAAACCCACCTAC
521 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA-TATGAAGATGTGCCTAAACCCACCTAC
* *
12189850 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCTGCCCGCCCGCC
585 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--T----GCCCGCC
* * * * *
12189915 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTATATGATCAAACCAGACTG
642 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGCATAAGATCAAACCAGACCG
* * * *
12189980 AGGGTTGCGGCAGCACGATTGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCT-T
707 AGGGTTGCGGCAGCACGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG-TAC
*
12190044 C-CCCCT-TGGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
771 CGCCCCTCT-GGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
*
12190107 CATTCCCAGTCTAAGAATACGGAGTTCATTCCCAA-TCTAAGATCGGACCAGATC
835 CATTCCCAGTCTAAGAATACGGAGTTCATT-CCAAGTCTAAGATCGGACCAGACC
* * *
12190161 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCAGGGA
1 GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGC
* **
12190226 ACCATCACCAGAGCATCACCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGTGATCGGGGGGGC
66 ACCATCGCCAGAGCATCACC-GAGAACCTGAC-GGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
12190291 AGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
129 ACGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
12190356 TCCCTCATCAAACCTCGAGAACTCACAACCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
193 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
12190421 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
258 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * * * *
12190486 TTTGACTTTTTGGCTGAATTTTTTTCTGCAAGCCAACAAAAATAAAAGGGTCACGTCTAGAAAGT
323 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGT
** * * * * *
12190551 TTGGTTCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATA
388 TTGGGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATA
* * *
12190616 GTGAAAAATAGAAAATGAGTCGTCTAGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTA
453 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
12190681 TGAATTTACAAGCCATAAAAAAGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
518 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
12190746 ACCACCCTATCGATCCACGGCTTGCGCATCCC
583 ACCACCCTATCGATCCACGGCTTGCGCATCCC
12190778 TCATCAAACC
Statistics
Matches: 1336, Mismatches: 133, Indels: 55
0.88 0.09 0.04
Matches are distributed among these distances:
877 27 0.02
878 280 0.21
879 174 0.13
880 6 0.00
881 1 0.00
882 2 0.00
883 1 0.00
884 1 0.00
885 177 0.13
886 6 0.00
887 137 0.10
888 52 0.04
891 2 0.00
893 1 0.00
895 1 0.00
896 29 0.02
897 3 0.00
898 433 0.32
899 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGC
ACCATCGCCAGAGCATCACCGAGAACCTGACGGCGGCATTGGGGTTCCGACGATCGGGGGGGCAC
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTG
GGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATAGTG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTT
CATCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGCATAAGATCAAACCAGACCGAGGGTTGCG
GCAGCACGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTACCGCCCCTCTG
GCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGAATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGACC
Found at i:12191105 original size:416 final size:418
Alignment explanation
Indices: 12190355--12191193 Score: 1335
Period size: 416 Copynumber: 2.0 Consensus size: 418
12190345 TTGGCCCCTT
12190355 ATCCCTCATCAAACCTCGAGAACTCACAACCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTCGAGAACTCACAACCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCT
12190420 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
** * * * *
12190485 CTTTGACTTTTTGGCTGAATTTTTTTCTGCAAGCCAACAAAAATAAAAGGGTCACGTCTAGAAAG
131 CTTCAACTTTTTAGCTGAATTGTTTTCTGCAAGCCAACAAAAATAAAAGGATCACGTCTACAAAG
* *
12190550 TTTGGTTCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
196 TTTGGTGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAAT
* * *
12190615 AGTGAAAAATAGAAAATGAGTCGTCTAGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGT
261 AGTGAAAAATAGAAAAGGAGTCATCTAGCCATGAAACTTCACTTGAAGGCTTAAGGGACAATTGT
*
12190680 ATGAATTTACAAGCCATAAAAAAGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
326 ATGAATTTACAAGCCATAAAAAAGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
*
12190745 TACCACCCTATCGATCCACGGCTTGCGC
391 TACCACCCTATCGATCCACGACTTGCGC
* * *
12190773 ATCCCTCATCAAACCTTGA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTCGAGAACTCACAACCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
12190837 GCCAGTAGCCATTAAAGTGTCTGAAATGGTGACACTTTTTTTAAATGGTCATAAAATCTTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
12190902 CTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATATAA-GATCACGTCTACCAAG
131 CTTCAACTTTTTAGCTGAATTGTTTTCTGCAAGCCAACAAAAATAAAAGGATCACGTCTACAAAG
* *
12190966 TTT-GTGGCCAAAATTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
196 TTTGGT-GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAA
* *
12191030 TCGTGAAAAATAGAAAAGGAGTCATCTTGCCATGAAACTTCA-TGTGAAGGCTTAAGGGACAATT
260 TAGTGAAAAATAGAAAAGGAGTCATCTAGCCATGAAACTTCACT-TGAAGGCTTAAGGGACAATT
* * * *
12191094 GTATTAATTTACAAGCCATAAAAATGGCATTTGCACATAGAAATATGAAGATGTGCCTAAACCCA
324 GTATGAATTTACAAGCCATAAAAAAGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
*
12191159 CCTACTACCCTATCGATCCACGACTTGCGC
389 CCTACCACCCTATCGATCCACGACTTGCGC
12191189 ATCCC
1 ATCCC
12191194 ATATCCCTGG
Statistics
Matches: 386, Mismatches: 33, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
415 3 0.01
416 220 0.57
417 145 0.38
418 18 0.05
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (418 bp):
ATCCCTCATCAAACCTCGAGAACTCACAACCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCAACTTTTTAGCTGAATTGTTTTCTGCAAGCCAACAAAAATAAAAGGATCACGTCTACAAAG
TTTGGTGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAAT
AGTGAAAAATAGAAAAGGAGTCATCTAGCCATGAAACTTCACTTGAAGGCTTAAGGGACAATTGT
ATGAATTTACAAGCCATAAAAAAGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGACTTGCGC
Found at i:12192400 original size:696 final size:704
Alignment explanation
Indices: 12190773--12192721 Score: 2909
Period size: 696 Copynumber: 2.8 Consensus size: 704
12190763 CGGCTTGCGC
*
12190773 ATCCCTCATCAAACCTTGA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
12190837 GCCAGTAGCCATTAAAGTGTCTGAAATGGTGACACTTTTTTTAAATGGTCATAAAATCTTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTTAAATGGTCACAAAATCTTGTACA
* * *
12190902 CTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATATAAGATCACGTCTACCAAGT
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGATCACGTCTACCAAGT
* * *
12190967 TTGTGGCCAAAATTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
196 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* *
12191032 GTGAAAAATAGAAAAGGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACAATTGTA
261 GTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTA
* * **
12191097 TTAATTTACAAGCCATAAAAATGGCATTTGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
326 TGAATTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
12191162 ACTACCCTATCGATCCACGACTTGCGCATCCCATATCCCTGGCCGACGTTGTGCCCGCCCGTCCA
391 ACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG----
* *
12191227 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAT
452 CCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAT
* ** * * *
12191292 CGAGGGTTACGATAGCACATGCTGGGCTTCGGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
517 CGAGGGTTGCGGCAGCACATGCTGGGCTTCGGCAAGTGCTGGTGCCACATTTTTCTTCGACGCGG
* *
12191357 CACCATCGTCGGAGCACACCGGAGAACCTGACTGGTGGCATTGGGGTTCCGACGATCGGGGGGCC
582 CACCATCATCAGAGCACACC-GAGAACCTGAC--G-GGCATTGGGGTTCCGACGATCGGGGGGCC
* * * * *
12191422 GGGGGGGTGTGCGTACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCT
643 CGGGGGGTGTGCGCACATGAGGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
12191484 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
12191549 GCCAGTAGCCATTAAAGTGTCTAAAATGGAGACACTTTTTTTGAATGGTCACAAAATCTTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTTAAATGGTCACAAAATCTTGTACA
12191614 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGATCACGTCTACCAAGT
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGATCACGTCTACCAAGT
*
12191679 TTGGGGCCAAAACTCCATT-CGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
196 TTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
*
12191743 CGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
260 CGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGT
* * * *
12191808 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATAGGATGATGTGCCTAAACCCACC
325 ATGAATTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
12191873 TACCACCCTATCGAACCACGACTGGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCC
390 TACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * * **
12191938 GCTCGTTTCATCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGA-CTG
455 GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-G
*
12192002 AGGGTTGCGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCACATTTTTCTTC-AC-CGG-
519 AGGGTTGCGGCAGCACATGCTGGGCTTC-GGCAAGTGCTGGTGCCACATTTTTCTTCGACGCGGC
* *
12192063 AGCATCATCAGAG-A-ACC-TG-ACC-GAC-GGCATTGGGGTTCCGACGATCGGGGGGGCCCGGG
583 ACCATCATCAGAGCACACCGAGAACCTGACGGGCATTGGGGTTCCGACGATC-GGGGGGCCCGGG
*
12192122 GGGTGTGCGCACATGAGGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
647 GGGTGTGCGCACATGAGGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
12192180 ATCCCTCATCAAACCTCAAGAACTGACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTT
1 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
12192245 GCCAGTAGCCGTGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTTAAATGGTCACAAAATCTTGTACA
* * *
12192310 CTTCGAGTTCTTAGCTGAATTTTTTTG-GCATGCCAAAAAAAATACAAGTATCACGTTTACCAAG
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG-ATCACGTCTACCAAG
*
12192374 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAATT
195 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* *
12192439 TGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGT
260 CGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGT
* * * *
12192504 ATGAATTTACAAGCCATCAAAATGGCATTAGCATGCAGAAATATGAAAATGTGCCTAAACCCACT
325 ATGAATTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
12192569 TGCCACCCTATTGATCCACGACTTACGCATCCCGTCTCTCTGGGCGGCGTAGTGCCCGCCTGCCC
390 TACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-G--C
12192634 GTCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
449 --CCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
12192699 CAGATCGAGGGTTGCGGCAGCAC
512 CAGATCGAGGGTTGCGGCAGCAC
12192722 GCAGAGGGGC
Statistics
Matches: 1129, Mismatches: 93, Indels: 39
0.90 0.07 0.03
Matches are distributed among these distances:
695 43 0.04
696 449 0.40
698 1 0.00
699 5 0.00
700 4 0.00
701 1 0.00
702 1 0.00
703 3 0.00
704 80 0.07
705 11 0.01
706 2 0.00
707 4 0.00
708 106 0.09
711 18 0.02
712 399 0.35
713 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (704 bp):
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTTAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGATCACGTCTACCAAGT
TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
GTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
CTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAG
GGTTGCGGCAGCACATGCTGGGCTTCGGCAAGTGCTGGTGCCACATTTTTCTTCGACGCGGCACC
ATCATCAGAGCACACCGAGAACCTGACGGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGT
GTGCGCACATGAGGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
Found at i:12193918 original size:183 final size:184
Alignment explanation
Indices: 12193696--12194051 Score: 486
Period size: 183 Copynumber: 1.9 Consensus size: 184
12193686 CGCACGTTTG
* * * * * *
12193696 GTGGGTTGTCTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATATGGAGTTGATTCCTAGTGTA
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
12193761 ATATCAGACCT-GACTGAGGGTTACGGTAGCACATGT-T-GGC-TCGGGCATGAGCTGGTGCCGC
66 AGATCAGA-CTGGACCGAGGGTTACAGCAGCACAT-TCTGGGCAT-GGGCATGAGCTGATGCCGC
*
12193822 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGACTTTAGGGTTCT
128 ATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGACTTTAGGGTTCT
* *
12193879 GTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATGCGGAGTTCATTCCCAGTCTA
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
12193944 AGATCGGATTGGACCGAGGGTTGCAGCAGCACATTCTGGGCATGGGCATGTGCTGATGCCGTATT
66 AGATCAGACTGGACCGAGGGTTACAGCAGCACATTCTGGGCATGGGCATGAGCTGATGCCGCATT
12194009 TTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGAC
131 TTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGAC
12194052 ATTGAGGTTT
Statistics
Matches: 150, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
182 2 0.01
183 83 0.55
184 64 0.43
185 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.27
Consensus pattern (184 bp):
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACTGGACCGAGGGTTACAGCAGCACATTCTGGGCATGGGCATGAGCTGATGCCGCATT
TTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGACTTTAGGGTTCT
Found at i:12193922 original size:26 final size:26
Alignment explanation
Indices: 12193893--12193945 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12193883 GTTGACTTAG
*
12193893 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12193919 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12193945 G
1 G
12193946 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12197183 original size:26 final size:26
Alignment explanation
Indices: 12197153--12197205 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12197143 GTTGACTTAG
12197153 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12197179 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12197205 G
1 G
12197206 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12198068 original size:26 final size:26
Alignment explanation
Indices: 12198017--12198069 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12198007 GTTGACTTAG
* *
12198017 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATACCCAACCTAA
*
12198043 GCATACGGAGTTCATACCCAATCTAA
1 GCATACGGAGTTCATACCCAACCTAA
12198069 G
1 G
12198070 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAACCTAA
Found at i:12199844 original size:26 final size:26
Alignment explanation
Indices: 12199814--12199866 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12199804 GTTGACTTAG
12199814 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
12199840 GCATATGGAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12199866 G
1 G
12199867 ATCCGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12200911 original size:892 final size:888
Alignment explanation
Indices: 12197930--12202974 Score: 5711
Period size: 892 Copynumber: 5.7 Consensus size: 888
12197920 GCAGCACACT
* * * * * *
12197930 GAGGGGGACCTGGCCGATCCCCAGCTTGTGCATCCATCCCCTCTTGCCGGCTGAGCGCCCGCACG
1 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * ** *
12197995 CTCTTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATAC
65 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTC
* * * ** * *
12198060 CCAATCTAAGATCAGATCGGACCGAGATTTACAGCAGCACATGCTGCGCTCGGGCATGTGCTGGT
130 CCAGTCTAAGATCA-AACCGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * ** * *
12198125 GCGGTATTTTTCTTTC-CCAGGGCACCAT-CATCGGAGAACCTGACCGGCGACATTGGGGTTTC-
194 GCCGCATTTTTC-TTCGTCGGGGCACCATGCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
12198187 AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
258 A-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
**
12198252 TATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCATTCCAGATTT
321 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTT
* * *
12198316 TATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACA
385 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
12198381 AAATCTTGTACACTTCGAATTTTTAGCT-ATATGTTTTTGTACATGCCAACAAAAATACAAGGAT
450 AAATCTTGTACACTTCGAGTTTTTAGCTGA-ATGTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
12198445 CACGTCTACCAAGTTTGGGGCCAAAA------CCGAAAAAATTTT-AAAAATCCCGAAACGTAAA
514 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAA
*
12198503 AAGTTTCAAAAATCGTGAAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCT
579 AAGTTTCAAAAATCGTG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
12198568 TAAGGGACCATTGTATGAATTTACAAGCCCATAAAAATGGCATTGGCATGCAAAAATATGAAGAT
643 TAAGGGACCATTGTATGAATTTACAAG-CCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
**
12198633 GTGCCTTAAACCCACCTTACCACCCCTATCGATCCAC-TTTTGGCGCATCCCGTCTCTCTGGCCG
707 GTGCC-TAAACCCACC-TACCA-CCCTATCGATCCACGACTT-GCGCATCCCGTCTCTCTGGCCG
* * * ** *** * *
12198697 GCATAGTGCCTGCCCACCCGCTTGTTCCATATCGTTTCGTTGGTTGGCTTAGGCATACGAAGTTC
768 ACGTAGTGCCTGCCCGCCCGCCCG--CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** * * * *
12198762 ATTCCCAGTCTAAGATCGGATCGGACTG-GAGGTTGCGGTAGTAGGATCGACAGCAC--A
831 ATTCCCAGTCTAAGATCAGAT-TAACCGAG-GGTTGTGGCAGCAGGATCGACAGCACGTA
* * * *
12198819 CGA-GAGGACCCGACCGATTCCTC-GCTTTG-GCATCCCACCTGCCACTCT-GCCGGC-GAGCTC
1 -GAGGGGGACCCGACCGA-TCCCCGGC-TTGCGCAT----CC-GCCCCTCTGGCCGGCTGAGCGC
* * * * * *
12198879 CC-AACGCTCATTTC-TGGGGTTAACTTTAAGCATA-AGAGTTTCATTCCCAATGCAAAGCATAC
58 CCGCACGCTCGTTTCGT-GGGTTGAC-TTAGGCATACGGAG-TTCATTCCCAAT-CTAAGCATAC
** ** * *
12198941 ACAGTTTTCAATTCCCAGTCTAAGATCGGACCAGAATCATGAGGGTTACGGTAGCTACATGCTGG
119 GGAG--TTC-ATTCCCAGTCTAAGATCAAACC-G-A-C-CGAGGGTTACGGCAGC-ACATGCTGG
* * *
12199006 GCTCGAGG-ATGTCCTGGTGCCCGCATTTTTCTTTGTTGGGGCACCATCGCGGAGCATTACTCGG
176 GCTCG-GGCATGTGCTGGTG-CCGCATTTTTCTTCGTCGGGGCACCAT-GC---G-----C-CGG
* **
12199070 AGAACCTGACCGGTCGGCATTAGGTGTTCCGGTGATCGAGGGGGCCGGGGGGTGTGCGCACATGA
229 AGAACCTGACCGG-CGGCATT-GGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGA
12199135 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAAC
291 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
12199199 -CACACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGCTGCCAG-AGCCCATTAAAGTGTC
356 TCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTT-GCTACCAGTAG-CCATTAAAGTGTC
* *
12199262 TGAAATGGGGAACACTTTTTTCACAATGGTCACAAAATCTTGTACTCTTTGAGTTTTTTAGCTGA
418 TGAAATGGGG-ACACTTTTTTCA-AATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGA
* *
12199327 ATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCT
480 ATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* *
12199391 TTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
545 TCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
12199456 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATA
610 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** * *
12199521 AAAATGGTGTTGG-AGTGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
675 AAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* ** * * * * *
12199585 ACGACATGCGCATCTTGTCCCCCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCACGCTTG
739 ACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTG--C--CCGCCCGCCCGCCCGCTCG
* * * * *
12199650 TTTTGTCGATTGGATTAGGCATATGGAGTTCATTCCTAGTCT---A--AGATT------GGGTTG
800 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTAACCGAGGGTTG
*
12199704 TGGCAGCAAGATCGACAGCACGTA
865 TGGCAGCAGGATCGACAGCACGTA
** * * * * *
12199728 GAGGGGGACTTGGCCGATTCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGGGAGCCCGCATGC
1 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * * *
12199793 TCGTTTCATGTGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTGATTCC
66 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCC
* * * * * *
12199858 CAGTCTAAGATCCGATCGGACCGAGGGTTGCGGCAGCATATGCTGGGCTCGAGCATGTGCTGGTG
131 CAGTCTAAGAT-CAAACCGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
12199923 CCGCAGTTTTT-TTCGTCAGGGCACCATCACTGAAGCATCACCGGAGAACCTGACCGACGGCA-T
195 CCGCA-TTTTTCTTCGTCGGGGCA-C--CA-T---G---CGCCGGAGAACCTGACCGGCGGCATT
** ***
12199986 GGGGTTCCGGTGATCGGGGGGCCCAAAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
249 GGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
12200051 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATT
313 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATT
* * * *
12200116 TGAGAGTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGACATGGGGACACTTTTTTCAAA
377 TGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * ** **
12200181 TGGTAACAAAATCTTGTACACTACGAGTTTTTAGCCGAATGTTTTTACGCACACCAACAAAAATA
442 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATA
** * *
12200246 CAAGGATCACGTCTA-CAAGTTCAGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCACGAA
507 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA
* *
12200310 CCACAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
572 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
12200375 AAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATCAAAATGGCATTGGCATGCAGAAATATG
637 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * * *
12200440 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATACCGTCTCTCTGGTC
702 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCC
*
12200505 GACGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTCA-GCACACGGAGTTC
767 GACGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT-AGGCATACGGAGTTC
* * *
12200569 ATTCCCATTCTAAGATCGGATTGAACCGAGGGTTGTGGCAGCAGGATCGACAGCATGTA
831 ATTCCCAGTCTAAGATCAGATT-AACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTA
* *
12200628 GAGGGGGACCCGACCGATCCCCGGCTTGCACATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACG
1 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACG
** * *
12200693 CTCGTTTCGTGGGTTGACGCAGGCATACAGAGTTCATTCCCAATCTAAGCATTCGGAGTTCATTC
65 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTC
*
12200758 CCAGTCTAAGATCAAACACGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
130 CCAGTCTAAGATCAAAC-CGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
12200823 GCCGCATTTTTCTTCGTTGGGGCACCAT-CGCCGGAGAACTTGACCGGCGGCATTAGGGTTCCGA
194 GCCGCATTTTTCTTCGTCGGGGCACCATGCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
* * *
12200887 CGATCGGTGGGGCTGGGGGGGTGTGCGCACATGATGTAC-AGTGGGTGCTGGTACTTGGCTCTTA
259 CGATCGG-GGGGC-CGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTA
* *
12200951 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTT
321 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTT
12201016 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
385 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
12201081 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACAAGGATC
450 AAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
12201145 AGGTCTACCATGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAA
515 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAA
*
12201210 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAACTTCATGTGAAGGCTT
580 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAACTTCACGTGAAGGCTT
* * *
12201275 AAGGGACCATTGTATGAATTTACCAGCCATAAAAATGTCATTGGTATGCAGAAATATGAAGATGT
644 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * * *
12201340 GCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGACGGCGTA-
709 GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * *
12201404 -G--T--------GCCCGCCCGTTCGTTTCGCCGGTTGGCATAGGCATACGGAGTTCATTCCCAG
774 TGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
12201458 TTTATGATCAGACTACACTGATGGTTGTGGCAGCAGGATCGATAGCATGTA
839 TCTAAGATCAGATTA-ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTA
*
12201509 GAGGGGGACCCG--CG-T-CCC-GCTTCGCGCAT--GCCTCT-TGGCCGGCTGAGCGCCCGCACG
1 GAGGGGGACCCGACCGATCCCCGGCTT-GCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * *
12201566 CTCGTTTCATTGGTTGACTT---CATATGGAGTTCA-T----GTC-AAG-A-AC--AGCTCATT-
65 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTC
* * *
12201617 CCAGT-T-AGATCAGACC-ACC-AAGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTG
130 CCAGTCTAAGATCAAACCGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
12201677 CCCCATATTTTTCTTTGTCGGGGGCACCATCGTTGGACGCAATCGTCGAGAACCTGACC-GCAGC
195 CCGC--ATTTTTCTTCGTC-GGGGCACCA----T-G-CGC---CG--GAGAACCTGACCGGCGGC
* *
12201741 ATTGGGGTT-CGAC-ATCAGGTTGGGCCGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGT
246 ATTGGGGTTCCGACGATC-GG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
12201804 ACTTGGCCCTTATATTGG-CCCTTAATCCCTCATCAAACCAT-GAAGAA-TGACACCCCCTTTAA
309 ACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACC-TCG-AGAACTCACA-CCCC-TTAA
** * * *
12201866 AGATTAATTGAGATTTTATAGGTTTGCTACCCGTAGCCATTAAAGTGTCTGAAATGGGGA-ACTT
369 AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
12201930 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTTCATGCCAA
434 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
* *
12201994 CAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
499 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* ** *
12202059 ATCTTGAACCAAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAAC
564 ATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
12202124 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
629 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
*
12202189 GAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
694 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
* * * * * *
12202254 CTCT-G--GAC---GT-CAT---AG--TGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCAAAC
759 CTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** ** * * *
12202307 AAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAAGATCGACAACACGT
824 GGAGTTCATTCCCAGTCTAAGATCAGATTA-ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGT
12202372 A
888 A
* * * * * *
12202373 GAGGGGGTCCCGATCGATCCCCGACTTGCGCATCCGCCTCTTTAGCCGGCTGAGCGCCCGCACGC
1 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
12202438 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAGGGAGCTCAATCC
66 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCC
* * * *
12202503 CAGTCTAAGATCAGACCCGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
131 CAGTCTAAGATCA-AACCGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
12202568 CCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGGCCGACAGCATTG
195 CCGCATTTTTCTTCGTCGGGGCACCAT-G-C---G---C--CGGAGAACCTGACCGGCGGCATTG
* * *
12202633 GGGTTCCGATGATCGGGGGGGCTGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTG
250 GGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
12202698 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGACCATTT
314 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTT
*
12202763 GAGATTTTACAGGTTTGCTACCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
378 GAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
12202828 GGTCACAAAATCTTGTACACTTC-A------AG-T---T-TTTTTATGCATGCCAACAAAAAAAC
443 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATAC
* * * *
12202881 AAGGATCACGTTTACCATGTTTGGGGACAAAACTCCTTCCGAAAAAATTTTACAAAATCTCGAAC
508 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAC
* *
12202946 CGTAAAAAGTTTCAAAAATCATGAAAAAT
573 CGCAAAAAGTTTCAAAAATCGTGAAAAAT
12202975 GGGATTGGCA
Statistics
Matches: 3580, Mismatches: 393, Indels: 376
0.82 0.09 0.09
Matches are distributed among these distances:
853 17 0.00
854 25 0.01
855 13 0.00
856 10 0.00
857 8 0.00
858 1 0.00
859 5 0.00
860 8 0.00
861 3 0.00
862 1 0.00
863 5 0.00
864 250 0.07
865 248 0.07
866 79 0.02
867 13 0.00
868 20 0.01
869 4 0.00
870 17 0.00
871 39 0.01
873 37 0.01
874 17 0.00
875 1 0.00
876 4 0.00
877 8 0.00
878 110 0.03
879 4 0.00
880 5 0.00
881 101 0.03
882 3 0.00
884 10 0.00
885 5 0.00
886 1 0.00
887 18 0.01
888 139 0.04
889 159 0.04
890 85 0.02
891 90 0.03
892 583 0.16
893 183 0.05
894 104 0.03
895 57 0.02
896 41 0.01
897 32 0.01
898 43 0.01
899 38 0.01
900 89 0.02
901 153 0.04
902 18 0.01
903 6 0.00
904 7 0.00
905 18 0.01
906 25 0.01
907 39 0.01
908 10 0.00
909 17 0.00
911 16 0.00
912 42 0.01
913 113 0.03
914 33 0.01
915 30 0.01
916 61 0.02
917 42 0.01
918 6 0.00
919 50 0.01
920 37 0.01
921 92 0.03
922 32 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (888 bp):
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCAAACCGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
CGCATTTTTCTTCGTCGGGGCACCATGCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
ATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGC
CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGATTAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTA
Found at i:12202503 original size:26 final size:26
Alignment explanation
Indices: 12202459--12202511 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12202449 GTTGACTTAG
* *
12202459 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGCTCAATCCCAATCTAA
* *
12202485 GCATAGGGAGCTCAATCCCAGTCTAA
1 GCATACGGAGCTCAATCCCAATCTAA
12202511 G
1 G
12202512 ATCAGACCCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCAATCCCAATCTAA
Found at i:12203314 original size:26 final size:26
Alignment explanation
Indices: 12203274--12203324 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12203264 TGACTTAGTT
* *
12203274 ATATGGAGTTAATTCCCAGTCTAAGC
1 ATATGAAGTTAATTCCCAGCCTAAGC
*
12203300 ATATGAAGTTCATTCCCAGCCTAAG
1 ATATGAAGTTAATTCCCAGCCTAAG
12203325 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATATGAAGTTAATTCCCAGCCTAAGC
Found at i:12204204 original size:26 final size:26
Alignment explanation
Indices: 12204168--12204220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12204158 GTTAACTTAG
*
12204168 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12204194 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12204220 G
1 G
12204221 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12205101 original size:26 final size:26
Alignment explanation
Indices: 12205071--12205123 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12205061 GTTGACTTAG
* *
12205071 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12205097 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12205123 G
1 G
12205124 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12205171 original size:903 final size:898
Alignment explanation
Indices: 12202969--12212365 Score: 11205
Period size: 903 Copynumber: 10.6 Consensus size: 898
12202959 AAAAATCATG
* *
12202969 AAAAATGGGATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
1 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
*
12203034 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCCGC-CCACTCGTTT
66 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CC-GCCCG---GCTCCGCTCGTTT
* * * * *
12203098 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAAACCGAGGGTTGCG
126 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTG
* * *** * * * *
12203163 GTAGCAGGATTGGCAGCATGTAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCGTCCCGCCCCTC
191 GCAGCAGGATCGGCAGCACACAGAGGGGGAACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* ** *
12203228 TGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGTTATATGGAGTTAATTCCCAG
256 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAG
* * * * * * *
12203293 TCTAAGCATATGAAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAGGGTTACGACAACACATA
321 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTTGCGACAGCACATG
* * *
12203358 CAGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTC
385 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC
* * *
12203423 GGAGAACCTGACCAACGGCATTGGGGCTCCGGCGAT-GGGGTGTCCGA-GGGGGTGTGTGCACAT
450 GGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGG-GT-CGAGGGGGGTGTGTGCACAT
*
12203486 GATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
513 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
*
12203551 ACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
578 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
12203616 TGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAGTT
643 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-AT
* * * * * *
12203681 TTTTTTTTGAATGCCAACAAAAATGCAGGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT
707 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * *
12203746 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAAATGA
772 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAAT-AGAAAACGA
* *
12203811 GTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGG-CCATTGCATGAATTTACAAGCCAT
836 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
12203873 AAAAATGGGATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
1 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
*
12203938 ACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTG--CCCGCCC-GC-CCGCTCGTTTCGTCG
66 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGGCTCCGCTCGTTTCGTCG
* * * * **
12203999 GTTAGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTGTGGTGGC
131 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGC
* * * * * ** * * * * *
12204064 ATGATTGGTAGAACATAGAGAAGG-ACCTGATCGATCCTCGACTTGCACGTCCCGCCCCTCTGGC
196 AGGATCGGCAGCACACAGAGGGGGAACC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
12204128 TGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCTCAGTCTA
260 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
* * *
12204193 AGCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CTAGACCGCGGGTTGCGACAGCACATGCTG
325 AGCATACGGAGTTCATTCCCAGTCTAAGATC-GATC-GGACCGAGGGTTGCGACAGCACATGCTG
* * *
12204257 GGGTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCAGGGCACCATCACCGGAGCATCGTCGGA
388 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGA
*
12204322 GAACCTGACCAACGGCATTGGGGTTCCGGTGAT-GGGCGGTCCGAGGGGGGTGTGTGCACATGAT
453 GAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGG-GGT-CGAGGGGGGTGTGTGCACATGAT
12204386 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
516 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
12204451 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGG
581 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
12204516 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTGTAGCTGAGTTTTT
646 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * * *
12204581 TTGTGCAAGCCAACAAAAGTACAAGGATCTCATCTACCGAGATTGGAGCCAAAACTCCTTCCGAA
711 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * * * *
12204646 AAAATTTT-AAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
776 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
12204710 CTTGCCATGAAACGTCTCGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCAT
841 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* **
12204768 ACAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
1 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
**
12204833 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCTGCCCATCTACCTGCTCGTTTC
66 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CC-GCCCGGCT-CC-GCTCGTTTC
* * * *
12204898 GTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGCCAGAGGGTTGCGG
127 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGG
* * ** * * *
12204963 TAGCAGGATCGACAGCATGCAGAGGGGGAACCGATCGATCCCCAGCTTGCACATCCCGCCCCTCT
192 CAGCAGGATCGGCAGCACACAGAGGGGGAACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* *
12205028 GGTCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT
257 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT
* *
12205093 CTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGC
322 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTTGCGACAGCACATGC
* * *
12205158 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCATCG
386 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCG
* * * ** *
12205223 GAGAATCTGACCAACAGCATTGGGGTTCCGACGATGGGGGGTCCGA-GGGGGTGTGTGCACATGA
451 GAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGT-CGAGGGGGGTGTGTGCACATGA
*
12205287 TGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
515 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* *
12205352 TCACACCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTG
580 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
12205417 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
645 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
** * *
12205482 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAAATCCTTTCGA
710 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
12205547 AAAAATTTTAAAAAATCTCGGACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
775 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCG
*
12205612 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACTAGCCAT
840 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
12205671 AAAAATGGCATTGGCACATAGAAATATGAACATGTGCCCAAATCCACCTACCACCCTATCGATCC
1 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
12205736 ATGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCTGCCCACCCGCCCGC-CCGCTCATTT
66 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC--CCCGCCCG---GCTCCGCTCGTTT
* * * * * *
12205800 CATCGGTTGGCTTAGGCATACAGAGTTTATTCTCAGTCTAAGATCAGACCAGACTAAGGGTTGTG
126 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTG
** * * * * * * * * *
12205865 ATAGCAAGATTGGTAGCACATAGAGGGGG-ACCAGGCTGATCCCTGACTTGCACATCCCGCCCCT
191 GCAGCAGGATCGGCAGCACACAGAGGGGGAACC-GACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
12205929 CTGGCCGGCTGAGCGCCCGTATGCTCATTTCATGGGTTGACTGAGGCATACGGAGTTCATTCCCA
255 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA
* * * * *
12205994 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGTATCGAACAGAGGGTTGTGGCAGCACAT
320 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-ATCGGACCGAGGGTTGCGACAGCACAT
** * * * **
12206059 GCTGGGCTCGGGCA-GTGCTGGTGCCGCATTTTTCTTCACCGGGGCACTATCGCCAGAGCATCAC
384 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGT
* ** * * *
12206123 CGAAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGG--GCGGGGGGTGTGCT-TACAT
449 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGTCGAGGGGGGTGTG-TGCACAT
* *
12206185 GATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGA
513 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* *
12206249 ACTCACACACCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
578 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
12206314 TGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGGCTGCAT
643 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAAT
* *
12206379 TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGG-CAAAACTCCTTC
707 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * **
12206443 CAAAAAAATTTTAAAAAATCCCAAAACATAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAG
772 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAG
* * * * * *
12206508 TCGTCTTGGCATGAAACTTCACGTGGAGGCTTAAAGGACCATTGTATGGATTTGCAAGCCCT
837 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
12206570 AAAAATGGCTTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACTTGCCACCCTATCGATTC
1 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
12206635 ACGGCATGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCC-G-TTCGCTCATTTCGT
66 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-C-CGCCCGGCTCCGCTCGTTTCGT
* * * * *
12206698 CGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTATAGCA
129 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCA
* * *
12206763 GCAGGATCAGCAGCACATAGA-GGGGAACCGACCGATCCCCGGCTTGCGCATCGCGCCCCTCTGG
194 GCAGGATCGGCAGCACACAGAGGGGGAACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* *
12206827 CCGGCTGAGCACCCGCACCCTCGTTTC----G-TG-----GG----T----TT--TT-----T-T
259 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
* *
12206866 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGACAGCACATGCTG
324 AAGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTTGCGACAGCACATGCTG
* * *
12206931 GGCTCGGGCATGTGTTGGGGCCGCATTTTTCTTCATCGGGGCACCATCACC---G-A-------A
388 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGA
* * * *
12206985 GAACCTAACCGACGGCATTGGTGTTTCGGTGATCGTGGGGTC--GGGGGGTGTGCGCACATGATG
453 GAACCTGACCGACGGCATTGGGGTTCCGGTGATCG-GGGGTCGAGGGGGGTGTGTGCACATGATG
12207048 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
517 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* **
12207113 ACACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTG-TCGCCAGTAGCCATTAAAGTGTCAAA
582 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGA
*
12207177 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTT
646 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* **
12207242 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCTTGTTTGGGGCCAAAACTCCTTCCGAA
711 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
12207307 AAAATTTTATAAAATCCCGAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGT
776 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
*
12207372 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACTAGCCAT
841 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
12207430 AAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCC
1 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
12207495 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG--CCCGCCC-GC-CCGCTCATTTCATCG
66 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGGCTCCGCTCGTTTCGTCG
* * * *
12207556 CTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGC
131 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGC
* * * * * * *
12207621 AAGATCGGTAGCACATAGAGGGGG-ACCAGGCTGATCCCCGACTTGCACATCCCGCCCCTCTGGC
196 AGGATCGGCAGCACACAGAGGGGGAACC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
12207685 CGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAAGCATATACGGAGTTCATTCCCAGTC
260 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAT--GGAGTTCATTCCCAGTC
* * ** *
12207750 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGTATCGGACAGAGGGTTATGGCAGCACATGCT
323 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-ATCGGACCGAGGGTTGCGACAGCACATGCT
* ** ** *
12207815 GGGCTCGGGCA-GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGA
387 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGG
** *
12207879 AGAACCTGACCGGTGGCATTGGGGTTCC---GA-C---GATC-----GGG-G-GT---C--G--G
452 AGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGTCGAGGGGGGTGTGTGCACATGATG
*
12207923 -G-G--GGGTG-T-G--CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
517 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
12207980 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGA
582 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12208045 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGGCTGTATTTTT
647 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTT
* *
12208110 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGG-CAAAACTCCTTCCAAA
711 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
12208174 AAAATTTTAAAAAATCCCAAAACACAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGT
776 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
* * * * * *
12208239 CTTGGCATGAAACTTCACGTGGAGGCTTAAAGGACCACTGTATGGATTTACAAGCCCT
841 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
12208297 AAAAATGGCTTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACTTGCCACCCTATCGATCC
1 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
12208362 ACGGCATGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTCCGCTCA
66 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CCCGCCCG---G--C-TCCGCTCG
* * * * *
12208427 TTTCGTCGGTTGGCTTAGGCATACAGAATTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTT
123 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTT
** * * * * *
12208492 GCAGCAGCAAGATCGGCAGCACATAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCGCGCCT
188 GTGGCAGCAGGATCGGCAGCACACAGAGGGGGAACCGACCGATCCCCGGCTTGCGCATCCCGCCC
* *
12208556 CTCTGGCCGGCTGAGCACCCGCACACTCGTTTC----G-TG-----GG----T----TT--TT--
253 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCC
* * * * *
12208599 ---T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACGATAGTAC
318 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTTGCGACAGCAC
* *
12208660 ATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACC---G-A--
382 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATC
* * * * * *
12208719 -----AGAACCTAACCGACGGCATTGGTGTTTCGGGGGTCGGGGGGTC--GGGGGGTGTGCGCAC
447 GTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATC-GGGGGTCGAGGGGGGTGTGTGCAC
12208777 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
511 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
12208842 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-TCGCCAGTAGCCATTAAAGT
576 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGT
** *
12208906 GTCAAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
640 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* **
12208971 ATATTTTTGTGCATGCCAA-AATAAATACAAGGATCACGTCTACCTTGTTTGGGGCCAAAACTCC
705 ATTTTTTTGTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* *
12209035 TTCC-AAAAAATTTTTATAAAATCCCGAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAA
769 TTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
* * *
12209099 TGAGTCGTCTTGCCATGAAACTTTAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
833 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
12209164 C
898 T
* * * *
12209165 AAAATTGGCATCGGCACATAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCC
1 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * *
12209230 ACGGCTTGCGCATGCCATCTCTCTAGCTGACCTAGTG--CCCG--C--CT--GCTCGTTTCGTCA
66 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGGCTCCGCTCGTTTCGTCG
* * * * **
12209287 GTTGGCTTAGGCTTATGGAGTTCATTCCCAGTCTAAGTTCAGACCAGACTGAGGGTTGTGGCAAT
131 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGC
* * * * * *
12209352 AGGATTGGCAGCACATAGAGGGGG-ACCCAGCCGATCCTCGGCTTGCGCATCCCACACCTCTGGC
196 AGGATCGGCAGCACACAGAGGGGGAACCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * **
12209416 CGACTGACCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
260 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
** * * * * *
12209481 AGCATACAAAGTTCATTCCCAGTCTAGGATCGAACCAGACCGAGGGCTGCGGCAGCACATGCTGG
325 AGCATACGGAGTTCATTCCCAGTCTAAGATCG-ATCGGACCGAGGGTTGCGACAGCACATGCTGG
* * * * ** *
12209546 GCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGCCGGAG
389 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * *
12209611 AACCTGACCGGCAGCATTGGGGTTCCGGTGATCGGGGG-GGCTGGGGGGTGTGTGCACATGATGT
454 AACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGTCG-AGGGGGGTGTGTGCACATGATGT
* * * *
12209675 GCGATGGGTGCTGGTACTTTGCCCTTATATTGGACCCGTATCCCTCATCAAACCTCGAGAACTCA
518 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
12209740 CACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAA
583 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12209805 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTCTTTAGTTGAATTTTTTT
648 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12209870 -TGCAAGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCCAAAACTCCATCCGAAAA
713 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * * *
12209934 CATTTTCAAAAATCTCGAACCGAAAAAAGATTT-G-AAATCGTGAAAAATAAAAAACGAGTCATC
778 AATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
* * **
12209997 TTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAAACAT
842 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
**
12210054 AAAAATGGCATTGGCAC-GTGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
1 AAAAATGGCATTGGCACACAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * ** *
12210118 CAC-GCTTACGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCC-CACCCGCTAGCCCGGGCATT
65 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCGC-CCGGCT---CCGCTCGTT
* * * * * **
12210181 TTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATTGGACCGGACCAAGGGTTGT
125 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGT
* * * ** ** * * * ** * *
12210246 GGTAGTAGGATTGATAGCATGCAGAGGGCGACCCGACCCATCCCTAGCTTACGCATCCCACCCCT
190 GGCAGCAGGATCGGCAGCACACAGAGGGGGAACCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
12210311 CTGGCCAGCTGAGCGCCCGCTCACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
255 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA
* * ** * *
12210376 GTTTAAGCATACAGAGTTCATT---AGTCTAAGAT--AT---AATGA-GTTTG-G-GAGC-CATG
320 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGATCGGACCGAGGGTTGCGACAGCACATG
* *
12210429 CTGGGCT-GGGCATGTGCTGGTGACACTCATTTTTCTTC-AC-GGGCACCA--ACCTGTGAGCAA
385 CTGGGCTCGGGCATGTGCTGGTG-C-CGCATTTTTCTTCGTCGGGGCACCATCACC-G-GAGC-A
* * * * * * * * *
12210489 TCTTC-GA-AAACTGA-CGGCGGTATTAGGGTTCCGTGACGATCGAGGGTTGTCGGGGGGTGTG-
445 TCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCG-G-TGATCGGGGGTCG-AGGGGGGTGTGT
* * **
12210550 CCACATGATGTGTGAT-GGTGCCAGTACTTGG-CCTTATATTGG-CCCCTATCCCTCATCAAACC
507 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
12210612 TCGAGAACTCAACACACCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTA
572 TCAAGAACTC-ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
12210677 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
636 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * * *
12210742 TTGAATTTTTTTGTGCATCCCAAAAAAAATACAAGCAACATGTCTACCAAGTTTGGGGCCAAAAC
701 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * *
12210807 TCCTTCC-AAAAAAATTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAA
766 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAA
*
12210871 AACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
831 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
12210936 CCT
896 CAT
* ** *
12210939 AAAAATAGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCC
1 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * ** *
12211004 ATGGCTTGCGCATCTCGTCTCTC-GATCGGCGTAGTGCCCATCCGCCCGGCCGCCCGCTTCGTTT
66 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC--CCGCCCGG-C-TCCGC-TCGTTT
* * * * * * *
12211068 CATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGGCCGAGGGTTGCG
126 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTG
* * * * * *
12211133 GCAGTAGGATCAGTAGCACACAGAGGGGG-ACCTGACCGATCCTCGGCTTGCGTATCCTGCCCCT
191 GCAGCAGGATCGGCAGCACACAGAGGGGGAACC-GACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * *
12211197 CTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCA
255 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA
* ** * * *
12211261 GTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGGATTAGACTGAGGGTTACGATAGCACAT
320 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTTGCGACAGCACAT
* * * *
12211326 GCTGGGCTCGGGCATGTGCTAGTGTCGCATTTTTCTTCGTCGGGGCACTATCACCGGAGCATCGC
384 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGT
* * * ** * **
12211391 CAGAGAACCTGACCGGCGGCATTGGGGGTCCAATGATCGGGGGGCCGA-GGGGGTGTGCACACAT
449 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATC-GGGGGTCGAGGGGGGTGTGTGCACAT
* * * * * **
12211455 GATGTGCGATAGGTGCTGGTGCTTTGCCGTTATATTGGCCCCCTAACCCTCATCAAACCTTGAGA
513 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* *
12211520 ACTCACACCCTCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
578 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
**
12211585 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTAGGAGTTTTTAGCTGAATT
643 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
12211650 TTTTTGTGCATGCCAACAAAAATACAAGGATTATGTCTGCCAAGTTTGGGGCCAAAAATCCTTCC
708 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * *
12211715 GAAAAAATTTTAAAAAATCCCGAAGCACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGT
773 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGT
*
12211780 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCAT
838 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** *
12211841 -AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCC
1 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * ** *
12211905 ACGGCTTGCGTATCCCGTCTCTCTGGCCGGCATAGTG--CCCACCC-G-TTCGCTCGTTTTATCA
66 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGGCTCCGCTCGTTTCGTCG
* * * * * ** *** *
12211966 GATGGCTTAGGCATACAGAGTTCATTCCAAGTATAAGATTGGACTGGA-TCGAGGGTTGCAACAT
131 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGTGGCAG
* ** * * * * * * *
12212030 CAGGATTGGCAGCACGTAGAGGGGGACCCTG-TCGATCCCCGACTTGTGCATCCCACCCTTCCGG
195 CAGGATCGGCAGCACACAGAGGGGGAACC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * ***
12212094 CCGACTGAGTGCTCGTACGCTTGTTTCATGGGTTGACTTAGGCATACACAGTTCATTCCCAGTCT
259 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
* * * * * *
12212159 AAGCATATGGTGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGACAGTACATGCTG
324 AAGCATACGGAGTTCATTCCCAGTCTAAGATCG-ATCGGACCGAGGGTTGCGACAGCACATGCTG
* * **
12212224 GGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGAT-GG
388 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCG-TCGG
* * * * *
12212288 AGAACCTGACCGACGGTATTGGGGTTTCGATGATCGGGGGGGCTGA-GGGGGTGTGCGCACATGA
452 AGAACCTGACCGACGGCATTGGGGTTCCGGTGATC-GGGGGTC-GAGGGGGGTGTGTGCACATGA
*
12212352 TGTGTGATGGGTGC
515 TGTGCGATGGGTGC
12212366 CAGTACTTTT
Statistics
Matches: 7355, Mismatches: 890, Indels: 505
0.84 0.10 0.06
Matches are distributed among these distances:
840 23 0.00
843 1 0.00
844 1 0.00
847 1 0.00
848 4 0.00
850 66 0.01
851 42 0.01
852 84 0.01
853 55 0.01
854 1 0.00
855 1 0.00
856 97 0.01
857 60 0.01
858 36 0.00
859 108 0.01
860 358 0.05
861 2 0.00
862 4 0.00
863 2 0.00
864 10 0.00
865 2 0.00
866 4 0.00
867 435 0.06
868 489 0.07
869 38 0.01
870 1 0.00
871 15 0.00
873 5 0.00
874 4 0.00
875 2 0.00
876 2 0.00
877 4 0.00
878 59 0.01
879 186 0.03
882 2 0.00
883 34 0.00
884 224 0.03
885 317 0.04
886 233 0.03
887 34 0.00
888 53 0.01
889 145 0.02
890 107 0.01
891 220 0.03
892 3 0.00
893 154 0.02
894 259 0.04
895 308 0.04
896 397 0.05
897 229 0.03
898 33 0.00
899 409 0.06
900 313 0.04
901 290 0.04
902 509 0.07
903 767 0.10
904 111 0.02
905 1 0.00
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGGCTCCGCTCGTTTCGTCG
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGC
AGGATCGGCAGCACACAGAGGGGGAACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGATCGGACCGAGGGTTGCGACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGTCGAGGGGGGTGTGTGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
Found at i:12206004 original size:26 final size:26
Alignment explanation
Indices: 12205974--12206026 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12205964 GTTGACTGAG
*
12205974 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12206000 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12206026 G
1 G
12206027 ATCGTATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12207763 original size:26 final size:26
Alignment explanation
Indices: 12207729--12207779 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12207719 ACTTAAGCAT
*
12207729 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
12207755 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
12207780 ATCGTATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:12211271 original size:25 final size:26
Alignment explanation
Indices: 12211242--12211291 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
12211232 GTTGACTTAG
12211242 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12211267 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
12211292 GGATCGGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12212165 original size:26 final size:26
Alignment explanation
Indices: 12212135--12212187 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12212125 GTTGACTTAG
12212135 GCATACACAGTTCATTCCCAGTCTAA
1 GCATACACAGTTCATTCCCAGTCTAA
****
12212161 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACACAGTTCATTCCCAGTCTAA
12212187 G
1 G
12212188 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACACAGTTCATTCCCAGTCTAA
Found at i:12212950 original size:26 final size:26
Alignment explanation
Indices: 12212913--12212965 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12212903 GTTGACTTAG
12212913 GCATACAGAGTT-ATTTCCCAGTCTAA
1 GCATACAGAGTTCA-TTCCCAGTCTAA
12212939 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
12212965 G
1 G
12212966 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12213089 original size:778 final size:772
Alignment explanation
Indices: 12211597--12213129 Score: 2058
Period size: 778 Copynumber: 2.0 Consensus size: 772
12211587 AAATGGGGAC
* *
12211597 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTAGGAGTTTTTAGCTGAATTTTTTTGTGCATG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTAGGAGTTTTGAGCTGAATTTTTTTGTGCACG
* * *
12211662 CCAACAAAAATACAAGGATTATGTCTGCCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
66 CCAACAAAAATACAAGGATCACGTCTGACAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* * * * *
12211727 AAAAATCCCGAAGCACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATG
131 AAAAATCCCGAAGCACAAAAAGCTTCGAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATG
12211792 AAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAATGGCATTGGCAT
196 AAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAATGGCATTGGCAT
* * *
12211857 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGTATCCCG
261 GCAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * **
12211922 TCTCTCTGGCCGGCATAGTGCCCACCCGTTCGCTCGTTTTATCAGATGGCTTAGGCATACAGAGT
326 TCTCTCTCGACGGCAGAGCGCCCACCCGCCCGCTCGTTTTATCAGATGGCTTAGGCATACAGAGT
* ** * * * * *
12211987 TCATTCCAAGTATAAGATTGGACTGGATCGAGGGTTGCAACATCAGGATTGGCAGCACGTAGAGG
391 TCATTCCAAGTATAAGATTAGACCAGACCGAGGGTTGCAACAGCAAGATCGGCAGCACGCAGAGG
* * * * ** *
12212052 GGGACCCTGTCGATCCCCGACTTGTGCATCCCACCCTTCCGGCCGACTGAGTGCTCGTACGCTTG
456 GGGACCCGGTCGATCCCCGACTTGCGCATCCCACCCCTCCGGCCGACTGAGTGCCCCCACGCTCG
* **
12212117 TTTCATGGGTTGACTTAGGCATACACAGTTCATTCCCAGTCTAAGCATATGGTGTTCATTCCCAG
521 TTTCATGGGTTGACTTAGGCATACACAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* * **
12212182 TCTAAGATCGAACCAGACCAAGGGTTGCGACAGTACATGCTGGGCTTGGGCATGTGCTGGTGCCG
586 TCTAAGATCGAACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCG
* * * ** * * *
12212247 TATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGATGGAGAACCTGACCGACGGTATTGGGG
651 CATTTTTCTTCATCGGGGCACCAACACCGGAGCATCGATGAAAAACCTGACCGACGGCATTGGGG
* * *
12212312 TTTCGATGATCGGGGGGGCTGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCCAGT
716 TTCCGACGATCGGGCGGGCTG-GGGGGTGTGCGCACATGATGTGTGATGGGTGCCAGT
*
12212370 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTAGGAGTTTTGAGTTGAATTTTTTTGTGCACG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTAGGAGTTTTGAGCTGAATTTTTTTGTGCACG
* * * * *
12212435 CCAACAAAAATACAAGGATCACGTCTGACGATTTTGGGGCCAAAACTCCTTTC-AAATAATTTTA
66 CCAACAAAAATACAAGGATCACGTCTGACAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* * * * *
12212499 AAACAT-TCGGAGC-CAAAAAAGCTTCGAAAATTATGAAAAATAGAAAACGAGTCATCTTGCCAT
131 AAAAATCCCGAAGCAC-AAAAAGCTTCGAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCAT
*
12212562 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
195 GAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGC
*
12212627 ATGTAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
259 ATGCAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
12212692 CG-CTGTCGATCGAC-GTAGAGCCCGCCCGCCCGCCCGCTCGCTCATTTCGTCAGTTGGCTTAGG
324 CGTCTCTC--TCGACGGCAGAG--CGCCCACCCGCCCGCTCG-T--TTT-ATCAGATGGCTTAGG
* * *** *
12212755 CATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAAGATCGGTAG
381 CATACAGAGTTCATTCCAAGTATAAGATTAGACCAGACCGAGGGTTGCAACAGCAAGATCGGCAG
* * * *
12212820 CACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCG-GTCGAGTGC
446 CACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCACCCCTCCGGCCGACT-GAGTGC
* *
12212884 CCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT-ATTTCCCAGTCTAAGCATACGAA
510 CCCCACGCTCGTTTCATGGGTTGACTTAGGCATACACAGTTCA-TTCCCAGTCTAAGCATACGAA
* * * ** *
12212948 GTTCATTCCCAGTCTAAGATCGGA-CTGAACCGAGGGTTACGGTAGCACATGCTGGGCTCATGCA
574 GTTCATTCCCAGTCTAAGATCGAACCAG-ACCAAGGGTTACGACAGCACATGCTGGGCTCAGGCA
*
12213012 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAACACCGGAGCATCG-TCGAAAAACTTGAC
638 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAACACCGGAGCATCGAT-GAAAAACCTGAC
*
12213076 CGGCGGCATTGGGGTTCCGACGATCGGGCGGGCTGGGGGGTGTGCGCACATGAT
702 CGACGGCATTGGGGTTCCGACGATCGGGCGGGCTGGGGGGTGTGCGCACATGAT
12213130 CTGCATTGGG
Statistics
Matches: 656, Mismatches: 90, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
770 1 0.00
771 99 0.15
772 96 0.15
773 111 0.17
774 14 0.02
775 1 0.00
777 27 0.04
778 307 0.47
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (772 bp):
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTAGGAGTTTTGAGCTGAATTTTTTTGTGCACG
CCAACAAAAATACAAGGATCACGTCTGACAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
AAAAATCCCGAAGCACAAAAAGCTTCGAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAATGGCATTGGCAT
GCAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTCGACGGCAGAGCGCCCACCCGCCCGCTCGTTTTATCAGATGGCTTAGGCATACAGAGT
TCATTCCAAGTATAAGATTAGACCAGACCGAGGGTTGCAACAGCAAGATCGGCAGCACGCAGAGG
GGGACCCGGTCGATCCCCGACTTGCGCATCCCACCCCTCCGGCCGACTGAGTGCCCCCACGCTCG
TTTCATGGGTTGACTTAGGCATACACAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
TCTAAGATCGAACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCG
CATTTTTCTTCATCGGGGCACCAACACCGGAGCATCGATGAAAAACCTGACCGACGGCATTGGGG
TTCCGACGATCGGGCGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCCAGT
Found at i:12213851 original size:26 final size:26
Alignment explanation
Indices: 12213815--12213867 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12213805 GTTGACTTAG
* *
12213815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12213841 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12213867 G
1 G
12213868 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12214128 original size:890 final size:892
Alignment explanation
Indices: 12212370--12214553 Score: 3029
Period size: 890 Copynumber: 2.4 Consensus size: 892
12212360 GGGTGCCAGT
** * * *
12212370 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTAGGAGTTTTGAGTTGAATTTTTTTGTGCACG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT-TGCATG
* * * * *
12212435 CCAACAAAAATACAAGGATCACGTCTGA-CGATTTTGGGGCCAAAACTCCTTTC-AAATAATTTT
65 CCAATAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * * *
12212498 AAAACAT-TCGGAGCC-AAAAAAGCTTCGAAAATTATGAAAAATAGAAAACGAGTCATCTTGCCA
129 AAAAAATCTC-GAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
12212561 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
193 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
12212626 CATGTAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
258 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATC
** * ** * * * *
12212691 CCGCTGTC-GATCGACGTAGAGCCCGCCCGCCCGCCCGCTCGCTCATTTCGTCAGTTGGCTTAGG
323 CATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-CGCTCATTTCATCGGTTGGCTTAGG
* * * * * ** *
12212755 CATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAAGATCGGTAG
387 CATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAG
** * * * *
12212820 CACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGTCGAGTGCC
452 CACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGCTCGAGCGCC
12212885 CCCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTATTTCCCAGTCTAAGCATACGAAGT
517 CCCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTATTTCCCAGTCTAAGCATACGAAGT
* * * * * *
12212950 TCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTACGGTAGCACATGCTGGGCTCATGCATGT
582 TCATTCCCAATCTAAGATCAGACAGAACCGAGGGTTACAGCAGCACATGCTGGGCTCAGGCATGT
* *
12213015 GCTGGTGCCGCATTTTTCTTCATCGGGGCACCAACACCGGAGCATCGTCGAAAAACTTGACCGGC
647 GCTGGTGCCACATTTTTCTTCATCGGGG-----ACACC---GCATCGTCGAAAAACTTGACCGAC
* * *
12213080 GGCATTGGGGTTCCGACGATCGGGCGGGCTGGGGGGTGTGCGCACATGATCTGCATTGGGTGCTG
704 GGCATTAGGGTTCCGACGATCGGGCGGGCTGGGGGGTGTGCGCACATGATCTGCATTAGGTGCTA
12213145 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
769 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
* *
12213210 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGAG
834 AGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGAC
12213269 ACTTTTTT-AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT-TGCATG
* * *
12213333 CCAATAAAAATACAAGGATCGCATCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTA
65 CCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
12213398 AAAAATCTCGAACCGCAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATG
130 AAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
12213463 AAACTTCACGTGAAGGCTTAATGGACCATTGGATGAATTTACAAGCCATAAAAATGGCACTGGC-
195 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
12213527 TCGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCC
260 T-GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCC
* * * *
12213592 AATCTCTCTGGCCGGTGTAGTGCCCGCCTGCCTGCCCGCACGCTCGTTTCATCGGTTGGCTTAGG
324 -ATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-CGCTCATTTCATCGGTTGGCTTAGG
* * * *
12213657 CATACGGAGTTCATTCTCAATCTAAGATCGGACCAAACTGAGAGTTGCAGCAGCAGGATCGGCAG
387 CATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAG
* * * *
12213722 CACGTAGAGGGGGACCCGACCAATCCTCGTCTTGCGCATCCCGCCCCTCTGGCCGACT-GAGCGC
452 CACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG-CTCGAGCGC
* *
12213786 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGCATAC-AG
516 CCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT-ATTTCCCAGTCTAAGCATACGA-
* * *
12213849 AGTTCATTCCCAATCTAAGATCAGACCAG-ACCG-GGGTTGCAGCAGCACATGCTGGGTTCGGGC
579 AGTTCATTCCCAATCTAAGATCAGA-CAGAACCGAGGGTTACAGCAGCACATGCTGGGCTCAGGC
* ** * * *
12213912 ATGTGCTGGTGCCATATTTTTCTTTGTTGGGG-CA-C-CATCGTCGGAGAACTTGACCGACGGCA
643 ATGTGCTGGTGCCACATTTTTCTTCATCGGGGACACCGCATCGTCGAAAAACTTGACCGACGGCA
* * *
12213974 TTAGGGTTCCGGCGATCGGG-GGGGTCGGGGGGTGTGCGCACATGATGTGCGA-TAGGTGCTAGT
708 TTAGGGTTCCGACGATCGGGCGGGCT-GGGGGGTGTGCGCACATGATCTGC-ATTAGGTGCTAGT
*
12214037 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAG
771 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
*
12214102 CATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
836 CATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGAC
*
12214159 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTTTTGCATGC
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGCATGC
* * * *
12214224 CAATAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAA
66 CAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * *
12214289 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGA
131 AAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
12214354 AACTTCACGTGAAGACTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCAT
196 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
12214419 GCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCG
261 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCAT-CCA
* * *
12214484 TCTCTCTGGCCAGCATAGTGCCC-CCCGCCCGCCC-CCACTCATTTCATCGGTTGGCTTAGGCAT
325 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCATTTCATCGGTTGGCTTAGGCAT
*
12214547 ATGGAGT
390 ACGGAGT
12214554 ATTATGCCAA
Statistics
Matches: 1140, Mismatches: 129, Indels: 44
0.87 0.10 0.03
Matches are distributed among these distances:
887 32 0.03
888 1 0.00
889 13 0.01
890 458 0.40
891 52 0.05
894 1 0.00
895 2 0.00
897 1 0.00
898 94 0.08
899 28 0.02
900 164 0.14
901 56 0.05
902 234 0.21
903 4 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (892 bp):
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGCATGC
CAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCAT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCATTTCATCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAGCACG
CAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGCTCGAGCGCCCCCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTATTTCCCAGTCTAAGCATACGAAGTTCAT
TCCCAATCTAAGATCAGACAGAACCGAGGGTTACAGCAGCACATGCTGGGCTCAGGCATGTGCTG
GTGCCACATTTTTCTTCATCGGGGACACCGCATCGTCGAAAAACTTGACCGACGGCATTAGGGTT
CCGACGATCGGGCGGGCTGGGGGGTGTGCGCACATGATCTGCATTAGGTGCTAGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTAAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGAC
Found at i:12217039 original size:26 final size:25
Alignment explanation
Indices: 12216989--12217040 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
12216979 CCGGTCCGAT
* *
12216989 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATCAACTCCATATG
*
12217014 CTTAGACTGGGAATCAACTTCATATG
1 CTTAGACT-GGAATCAACTCCATATG
12217040 C
1 C
12217041 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATCAACTCCATATG
Found at i:12217913 original size:26 final size:26
Alignment explanation
Indices: 12217884--12217936 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12217874 CCGATCCGAT
12217884 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
12217910 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12217936 C
1 C
12217937 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:12218385 original size:904 final size:895
Alignment explanation
Indices: 12215246--12218684 Score: 4348
Period size: 904 Copynumber: 3.9 Consensus size: 895
12215236 CTGGTTCGAT
* * * *
12215246 CTTAGATTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
12215311 CTACCAGAGGGGTGGCATGCGCAAGCCGGGGATCGATCGAGTCCCCCTTTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGATAGGGTCCCCCTCTGCATGCTGTCGATCC
** * *
12215376 TGCTATTGCAACCCTTGGTTTGGTCAAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTTGGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-A
* * *
12215441 CTGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAA
195 CCGACGAAACGAGC-GGC-GAC--GCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
*
12215506 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
256 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
12215571 TTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATCGCAAGAC
** ** *
12215636 GACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTGTGGTTTGAGATTTTTTAAAATTTTTT
386 GACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
12215701 C-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATACTTTTATTTTTGTTGGCATGCACAAA
451 CGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
12215765 AAAA-TCAGCTAAAAACTCAAAGTGTATAAGATTTTGTGACCATTT-AAAAAAGGTGTTCCCATT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-GTGTCCCCATT
12215828 TCAGACACTTTAATGGC-AGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
579 TCAGACACTTTAATGGCTA-CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * * **
12215892 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGACTAAGTACCGGTGCCCATCGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * * * *
12215957 CATCATGTGCGCGCACCCCCCGGCGCCCCCGATCGTTGAAACCCCATTACCGTCGGTAAGGTTCT
708 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
12216022 -C----TGTTCCGATGGATGGTG-CCCGTCG-AGAAGAAATGCGGCA-CAGCACATGCACGAGCC
773 CCGGGATGCTCCGA-CGATGGTGCCCCGACGAAGAA-AAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
12216079 CA-CA--TGTGCTAC-GCACTCGATCTGGTCCGATCTTAGA-TGGGAATGAA-TCCATA-A
836 CAGCATGTGTGCCACAACCCTCGATCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATG
* * * *
12216133 CTTAAGACT--GAATGACCT-TG-ATGCCTAAGTCAACCCATAAAACGAGCGT-CAGGCGCTCAG
1 CTT-AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * *
12216193 CCGG-CAGAGGGGT-GGATGCGCAAG-CCGGGATCGA-CGGGT-CCCGTCTGCATGCT-AC-AT-
65 CCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGATAGGGTCCCCCTCTGCATGCTGTCGATC
* * ** * *
12216250 CTACT-GC-CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTTGGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
12216313 ACGATGAAACGAGCAGC-A-GCGGGCGGCCACTACG-CAGCCAGAGAGACGGGATGCG-AAGCCG
195 CCGACGAAACGAGCGGCGACGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCA
* * *
12216374 TGGATCGATAGGTTGGTTGGT-GGTTTGAGGCAGCATCTGTCATATTTTATG--TGCCAATGCCA
260 TGGATCGATAGGGTGGTAGGTGGGTTT-AGGCA-CATCT-TCATA-TTTCTGCATGCCAATGCCA
* * * * *
12216436 TTTTTACGGCTTATAAATTCATACAATGGTCCCTTAAG-CTTCACGTAAAGTTTCA-CGGGAAGA
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATC-GCAAGA
* * ** * *
12216499 CGACTCGTTTTCTATTTTCCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTT
385 CGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * * *
12216564 TTGGAAGGAGCTCTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCTTGCACAAA
450 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
12216629 AAAATTCAGCTAAAAACTCGAAGTGTAC-AGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
12216692 CAG-CACTTT-ATGGCTACTGGCAGCAAACTTGTTAAAATCTCAAATGGCTCTTTAAGGGGGTGT
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTG-TAAAATCTCAAAT-GCTCTTTAAGGGGGTGT
* * *
12216755 GGACGTTCTC-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AGCACGAGCACCCATAA
643 -GA-GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-C
* *
12216818 GCACATCATGTGCGCACAACCCCCCCTGGCCCCCCCGATCGTTGGAACCCTAATGCCGCCGGTCA
705 GCACATCATGTGCGCAC-A-CCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * *
12216883 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGTGGCACCAGCACACGCCC
767 GGTTCTCCGG-GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
** *
12216948 GAGCATAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGAATGAACTCCGTAT
831 GAGCCCAGCATGTG-TGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGAATGAACTCCGTAT
12217013 G
895 G
* * * * * *
12217014 CTTAGACTGGGAATCAACTTCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
12217079 CGGCCAGAAGGGAGAGATGCACAAATCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGATAGGGTCCCCCTCTGCATGCTGTCGATCC
* * * * *
12217144 TGCTACCGCAACCATTCG-TCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAACCA
131 TGCTACCGCAACCCTTGGTTC-GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** *
12217208 TCCGACGAAATGAGC-G-G--GCGGGCGGGCACTACGCGGGCCACAGAGACGGGATGCGCAAGCC
195 -CCGACGAAACGAGCGGCGACGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCC
* ***
12217269 ATGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
259 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
12217334 TTATGGCTTGTAAATTCATACGATGGTCCCCTAAGCCTTCACGTGAAGTTTAATGGCAAGACAAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATCGCAAGACGAC
* * * * *
12217399 TCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCCAGATTTTTTAAACTTTTTTCGA
389 TCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA
* * * *
12217464 AAGGATTTTTAGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
12217529 TTCAGCTAAAAACTCGAACTATACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
12217594 CTCTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
12217659 TCGAGGTTTGATG-GTAGTTAGGGGGCCAATATAAGGGCCAAGTACCAGCCCCCATTGCACATCA
649 TCGAGGTTTGATGAG-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
12217723 TGTGTGCACACCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
713 TGTGCGCACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
*
12217788 AGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCAGCA
777 -GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
12217853 TGTGTTGCCACAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATG
841 TGTG-TGCCACAACCCTCGATCCGGTCCGATCTTAGACTG-GAATGAACTCCGTATG
*
12217910 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * *
12217975 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGATATGTTCCCCCTCTGCATGCTGCCGATCT
66 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGATAGGGTCCCCCTCTGCATGCTGTCGATCC
* * *
12218040 TGCTACCACAACCCTTGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTA
131 TGCTACCGCAACCCTTGGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-A
* *
12218105 CCGATGAAACGAGCGTGCGAACGGGTGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
195 CCGACGAAACGAGCG-GCG-AC--GCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
** *
12218170 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCCA
256 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
12218235 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATCACAAGAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATCGCAAGAC
* * ** * * * *
12218300 GACACATTTTCTAGTTTTCATGATTTTTGAAATTTTTTATGGTTCAAGATTTTTGAAAATTTTTT
386 GACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* **
12218365 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATTGTTGTATTTTTGTTGGCATGCACAAAA
451 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
12218430 AAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
12218495 -GAACACTTTAATGGCTACTAGTAGAAAACCTGTAAAATCTCAAATGATCTTTAAGGGGTTGTGA
581 AG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
12218559 ATTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
12218624 TCATGT--GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCTGTCAGGTTCT
710 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
12218685 TCGACGATGG
Statistics
Matches: 2194, Mismatches: 277, Indels: 148
0.84 0.11 0.06
Matches are distributed among these distances:
861 19 0.01
862 20 0.01
863 42 0.02
864 234 0.11
865 104 0.05
866 25 0.01
867 42 0.02
868 1 0.00
869 1 0.00
871 2 0.00
872 19 0.01
873 70 0.03
874 19 0.01
875 6 0.00
876 2 0.00
877 3 0.00
878 16 0.01
879 33 0.02
880 20 0.01
881 13 0.01
882 16 0.01
883 11 0.01
884 54 0.02
885 13 0.01
886 15 0.01
887 11 0.01
888 13 0.01
889 5 0.00
890 11 0.01
891 1 0.00
892 2 0.00
893 8 0.00
894 22 0.01
895 261 0.12
896 396 0.18
897 85 0.04
898 40 0.02
899 19 0.01
900 20 0.01
901 44 0.02
902 9 0.00
903 1 0.00
904 445 0.20
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGATAGGGTCCCCCTCTGCATGCTGTCGATCC
TGCTACCGCAACCCTTGGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAC
CGACGAAACGAGCGGCGACGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCAT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATCGCAAGACGACTC
ATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGT
GCCACAACCCTCGATCCGGTCCGATCTTAGACTGGAATGAACTCCGTATG
Found at i:12219476 original size:835 final size:836
Alignment explanation
Indices: 12217863--12219487 Score: 2460
Period size: 835 Copynumber: 1.9 Consensus size: 836
12217853 TGTGTTGCCA
12217863 CAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
1 CAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
12217928 TCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGAT
66 TCCGTAAGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGAT
* ** * *
12217993 GCGCAAGTCGGGGATCGATATGTTCCCCCTCTGCATGCTGCCGATCTTGCTACCACAACCCTTGG
131 GCGCAAGCCAAGGATCGATATGTTCCCCCTCTGCATGCTGCCGATCCTGCTACCACAACCCTCGG
* * *
12218058 TTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTACCGATGAAACGAGCGTGC
196 TTCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGC
* *
12218123 GAACGGGTGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGT
261 G-ACGGGCGGGCGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGT
12218188 GGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
325 GGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
12218253 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATCACAAGACGACACATTTTCTAGTTTT
390 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATCACAAGACGACACATTTTCTAGTTTT
* *
12218318 CATGATTTTTGAAATTTTTTATGGTTCAAGATTTTTGAAAATTTTTTCGAAAGGAGTTTTGGCCC
455 CATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTGAAAATTTTTTCGAAAGGAGTTTTGGCCC
** * *
12218383 CAAACTTGGTAGACATGATTGTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTC
520 CAAACTTGGTAGACATGATCCTTGAATTTTTGTTGGCACGCACAAAAAAATTCAGCCAAAAACTC
12218448 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTAC
585 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AACACTTTAATGGCTAC
*
12218513 TAGTAGAAAACCTGTAAAATCTCAAATGATCTTTAAGGGGTTGTGAATTCTCGAGGTTTGATGAG
649 TAGCAGAAAACCTGTAAAATCTCAAATGATCTTTAAGGGG-TGTGAATTCTCGAGGTTTGATGAG
* *
12218578 GGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCGG
713 GGATAGGGGGCCAACACAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCGA
*
12218643 CCCCCCCGATCGTCGGAACCCCAATGCCGCCTGTCAGGTTCTTCGACGATGGTACCCCG
778 CCCCACCGATCGTCGGAACCCCAATGCCGCCTGTCAGGTTCTTCGACGATGGTACCCCG
* * *
12218702 CAACCCTCGATCCGATCCTATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC
1 CAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * *
12218767 TCCGTAAGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGTCGACCAGAGGGGCGGGAT
66 TCCGTAAGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGAT
* * * * *
12218832 GCGCTAGCCAAGGATCGATCGA-G-TCCCCCTCTGCGTGCTGCTGATCCTGTTGCCACAACCCTC
131 GCGCAAGCCAAGGATCGAT--ATGTTCCCCCTCTGCATGCTGCCGATCCTGCTACCACAACCCTC
* * *
12218895 GG-TCTGGTCCCATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACGGACGAAACGAGCG
194 GGTTC-GATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * *
12218959 -G-G-CGGGCGGGCGGGCACTACATCGGCCAGAGATACGGGATGCGCAAGCTGTGGATCGATAGG
258 TGCGACGGGCGGGCGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGG
* * * *
12219021 GTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGTGA-GCCAATGCCATTTTTATGGCTTGTA
323 GTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTG-CATGCCAATGCCATTTTTATGGCTTGTA
* ** * * *
12219085 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTA-T
387 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATCACAAGACGACACATTTTCTAGT
* ** * *
12219149 TTTTATTGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
452 TTTCA-TGATTTTTGAAACTTTTTACGGTTCAAGATTTTTGAAAATTTTTTCGAAAGGAGTTTTG
* * * * *
12219214 GCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTTTTGGCACGCATAAAACAATTCAGCTAAAA
516 GCCCCAAACTTGGTAGACATGATCCTTGAATTTTTGTTGGCACGCACAAAAAAATTCAGCCAAAA
* *
12219279 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTT-AAGGCACTTTAATT
581 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA--CACTTTAATG
* * * *
12219343 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGAGTTCTCGAGGTTTGA
644 GCTACTAGCAGAAAACCTGTAAAATCTCAAATGATCTTTAAGGGGTGTGAATTCTCGAGGTTTGA
*
12219407 TGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGTGCACACC
709 TGAGGGATAGGGGGCCAACACAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGTGCACACC
12219472 CCCCGACCCCACCGAT
772 CCCCGACCCCACCGAT
12219488 GGATGAAACC
Statistics
Matches: 709, Mismatches: 68, Indels: 22
0.89 0.09 0.03
Matches are distributed among these distances:
833 71 0.10
834 5 0.01
835 402 0.57
836 1 0.00
837 1 0.00
838 3 0.00
839 224 0.32
840 1 0.00
841 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (836 bp):
CAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTAAGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGAT
GCGCAAGCCAAGGATCGATATGTTCCCCCTCTGCATGCTGCCGATCCTGCTACCACAACCCTCGG
TTCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGC
GACGGGCGGGCGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTG
GTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATCACAAGACGACACATTTTCTAGTTTTC
ATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTGAAAATTTTTTCGAAAGGAGTTTTGGCCCC
AAACTTGGTAGACATGATCCTTGAATTTTTGTTGGCACGCACAAAAAAATTCAGCCAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAACACTTTAATGGCTACTA
GCAGAAAACCTGTAAAATCTCAAATGATCTTTAAGGGGTGTGAATTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAACACAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCGACCC
CACCGATCGTCGGAACCCCAATGCCGCCTGTCAGGTTCTTCGACGATGGTACCCCG
Found at i:12220263 original size:26 final size:26
Alignment explanation
Indices: 12220234--12220286 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12220224 CCGGTCTGAT
12220234 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12220260 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12220286 C
1 C
12220287 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12223095 original size:26 final size:26
Alignment explanation
Indices: 12223066--12223116 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12223056 TTTCATGATT
* *
12223066 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTAGAAATGAACTCCGTATGG
*
12223092 TTAGACTAGAAATGAACTCTGTATG
1 TTAGACTAGAAATGAACTCCGTATG
12223117 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGAAATGAACTCCGTATGG
Found at i:12227301 original size:26 final size:26
Alignment explanation
Indices: 12227272--12227324 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12227262 CTGGTCCGAT
12227272 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12227298 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12227324 C
1 C
12227325 CTAAGTCGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12227811 original size:925 final size:925
Alignment explanation
Indices: 12226524--12228220 Score: 2677
Period size: 925 Copynumber: 1.8 Consensus size: 925
12226514 CTGCCGATTT
* * * *
12226524 TGCTGCCGCAACCCTCGGTCCGTTTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGTCTCGATCTTAGACTCGAAATGAACTCCAGATGCCTAAGCCAA
* * * *
12226589 CCGACAAAACGAGCAGACGGGCGGGAAGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
66 CCGACAAAACGAGCAGA-GCGCGGG-ACGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGAAA
* *
12226654 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCATTGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
12226719 TTTTTAAGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGTC
194 TTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGAC
* * *
12226784 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCAAGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACAGTTCAAGATTTTTAAAAATTTTTT
* * *
12226849 CAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAC
324 CAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA-
*
12226914 AAAATCCAGCTGAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATCCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGA-CATTTGAAAAAAGTGTCCCCATTT
* * *
12226979 CAGTCACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGA
452 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
12227044 GTTCCCAAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACA
517 GTTCCCAAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* *
12227109 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCAGAACCCTAATGCCGTCAATCAGGTTCTCC
582 TCATGTGCGCACA-CCCCCCGGCCCCCCAATCGTCAGAACCCTAATGCCGCCAATCAGGTTCTCC
* * *
12227174 GACGATGCTCCGACGATGGTGCCCCGAG-GAAGAAAAATGCCGCACCAGCACTTGCCCGAGCCCA
646 AACGATGCTCCGACGATGGTGCCCCG-GCGAAGAAAAATACCGCACCAGCACATGCCCGAGCCCA
** *
12227238 GCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
710 GCATGTGCTGCCACAACCCTAGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
12227303 ACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACAAAACGAGCGTGAGGGCGCTCAGCCGGCT
775 ACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACAAAACGAGCGTGAGGGCGCTCAGCCGGCT
12227368 AGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCTCTCTACGTGCTATCGATGCTGCTG
840 AGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCTCTCTACGTGCTATCGATGCTGCTG
12227433 TCGTAACCTTCGGTCTGGTCC
905 TCGTAACCTTCGGTCTGGTCC
* * *
12227454 TGCTGTCGCAACCCTTGGTCCAGTCT-GATCTTAGACTCGAAATGAAATTCC-GATGCCTAAGCC
1 TGCTGCCGCAACCCTCGGTCC-GTCTCGATCTTAGACTCGAAATG-AACTCCAGATGCCTAAGCC
* * *
12227517 AACTGACGAAACGAGC-G-GCGCGGG-CGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGAAA
64 AACCGACAAAACGAGCAGAGCGCGGGACGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGAAA
*
12227579 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
12227644 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGAC
194 TTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGAC
* * * ***
12227709 GATTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTGCGGTTTGGGATTTTTAAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACAGTTCAAGATTTTTAAAAATTTTTT
*
12227774 CAAAAGGATTTTTGGCCCCAGACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
324 CAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
** **
12227839 AAATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACATTTGAAAAAAGTGTCCCCATTTCA
389 AAATCCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACATTTGAAAAAAGTGTCCCCATTTCA
*
12227904 GACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
454 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*** * * *
12227969 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACGCATCACACATC
519 TCCCAAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* * * ** *
12228034 ATGTGCGCACACCCCCCGGCCCCTCAATTGTCGGAACCCTAATGCCGCCGGTCAGTTTCTCCAAC
584 ATGTGCGCACACCCCCCGGCCCCCCAATCGTCAGAACCCTAATGCCGCCAATCAGGTTCTCCAAC
*
12228099 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
649 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACCGCACCAGCACATGCCCGAGCCCAGCAT
* *
12228164 GTGTTGCCACAACCCTAGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
714 GTGCTGCCACAACCCTAGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
12228221 CTAAGCCGAC
Statistics
Matches: 697, Mismatches: 67, Indels: 14
0.90 0.09 0.02
Matches are distributed among these distances:
921 1 0.00
922 157 0.23
923 156 0.22
924 35 0.05
925 273 0.39
927 6 0.01
929 1 0.00
930 60 0.09
931 8 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (925 bp):
TGCTGCCGCAACCCTCGGTCCGTCTCGATCTTAGACTCGAAATGAACTCCAGATGCCTAAGCCAA
CCGACAAAACGAGCAGAGCGCGGGACGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGAAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
TTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACAGTTCAAGATTTTTAAAAATTTTTTCA
AAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATCCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
CCAAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
GTGCGCACACCCCCCGGCCCCCCAATCGTCAGAACCCTAATGCCGCCAATCAGGTTCTCCAACGA
TGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACCGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCACAACCCTAGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCGACCCACAAAACGAGCGTGAGGGCGCTCAGCCGGCTAGAGGG
GCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCTCTCTACGTGCTATCGATGCTGCTGTCGTAA
CCTTCGGTCTGGTCC
Found at i:12230134 original size:26 final size:26
Alignment explanation
Indices: 12230098--12230150 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12230088 CTGGTCCGAT
12230098 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12230124 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12230150 C
1 C
12230151 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12230963 original size:26 final size:26
Alignment explanation
Indices: 12230925--12230977 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12230915 TCGGTCCGAT
*
12230925 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
12230951 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
12230977 C
1 C
12230978 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12232487 original size:26 final size:26
Alignment explanation
Indices: 12232457--12232509 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12232447 GTTGACTTAG
*
12232457 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
12232483 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
12232509 G
1 G
12232510 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:12234147 original size:868 final size:875
Alignment explanation
Indices: 12233005--12236677 Score: 4467
Period size: 901 Copynumber: 4.2 Consensus size: 875
12232995 TAGTCGTCTT
* * *
12233005 ACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTA
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
** *
12233070 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGG-CCAGCGTAGTG-C
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGA-CGTAGTGCC
* * ** * * * * *
12233133 CGTCCCGCCCACCCGCTTGTTCGTTTCGTCGGTAGGCTTAGGCATACGGAGTTCATTCCAAGTCT
130 CG-CCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * *
12233198 AAGATTGGACCGGACCGAGGGTTGTGGCAGGAGGATCGGTAGCACGCAGAGGGGGACCCGAC-CT
194 AAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTCG
* * *
12233262 ATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACGCTCATTTCATGGGTTG
259 ATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
12233327 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-AG-G-GCT-GGA-CCGAGGGTTACGGCA
324 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAAGCGTGCTAGGATCCGAGGGTTACGGCA
* *
12233386 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATC-G-TCGG
389 GCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGGATCGG
* *
12233449 AGAACCTGACCGGCGGCATTAGGGTTCC-AGCGATCAGGGGGGCCGAGTGGGGTGTGCGCATATG
454 AGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCAGGGGGGCCG-G-GGGGTGTGCGCACATG
12233513 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
516 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
12233578 CTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
581 CTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
12233643 GAAATTGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTC
646 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
12233708 TTTTATGCATGCCGACAAAAATACAAGGATCACGTCTACCAAATTTGGGG-TAAAATCTCCTTCC
711 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTCC
* * * *
12233772 GAAAAAATTTTAAAAAATCCCGAACCGCAACAAGTTTCGAATATCTTGAAAAATAGAAAACGAGT
775 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGT
* *
12233837 CGTCTTGCGATGAAACTTCACGTGAAGTCTTAAGGG
840 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
12233873 ACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
12233938 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCC
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCC
* ** * *
12234003 GCCCGCCCGCCCACCCGCCCATTTTGTCAGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAA
131 GCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
12234068 GATCAAACCAGACCAAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGAGGGAGACCCGACT-GAT
196 GATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTCGAT
* * * *
12234132 CGCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAC
261 CCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGAC
* * *
12234197 TTAGGCATACGGAGTTGATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGACC
326 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT--A-AG--C---GT--G-CT-AG----G---
* * *
12234262 ACACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTC
372 A-TCCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTC
12234327 GGGGCACCATCATCGGAGCATCACCGGAGAACCT-ATCCGGCGGCATTGGGGTTCCGACGAT-AG
436 GGGGCA-C--CATC-G-G-AT---CGGAGAACCTGA-CCGGCGGCATTGGGGTTCCGACGATCAG
* * *
12234390 GGGGGCCGGGGGCTGTGCGCACATGATGAGCGATGGGTCCTGGTACTTGGCCCTTATATTGGCCC
491 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
12234455 CCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTTAGATTTTACAGGTTT
556 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
* *
12234519 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGC
621 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
12234584 ACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGGTCACGTCTACC
686 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * * *
12234649 AAGTTTGGGGCTAAAATTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAATTTCAAA
751 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAA
* *
12234714 AATCGTGAAATATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGG
816 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *
12234774 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATTTGAAGATCTGCCTA
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
* * * *
12234839 AACCCACCTACCACCCAATTGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCC
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCC
* ** **
12234904 GCCCGCCTG-CCAGCCCGCTTGTTTCATCGGTTGGCTTAGGTGTACGGAGTTCATTCCCAGTCTA
131 GCCCGCCCGCCCA-CCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
12234968 AGATCGGACCAGACCAATGGTTGCAGCAGCAGGATCGGCAGCACGTAGAAGGGGACCCGA-TCGA
195 AGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTCGA
* * * *
12235032 TCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACTCTCATTTCCTGGGTTGA
260 TCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGA
* *
12235097 CTTAGGCATACGGA-TTCCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGA
325 CTTAGGCATACAGAGTT-CATTCCCAGTCTAAGCAT---AAG--C-GT----G-CT---A--GGA
* * * *
12235161 CCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCG
373 TC----CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCG
* * * *
12235226 TCAGGGCACCATCGTCGGAGCATCGCCAGAGAACCTAACCAGCGGCATTGGGGTTCCGACGATCG
434 TCGGGGCACCA---TC-G-G-ATCG---GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCA
*
12235291 GGGGGGCCGGGGAAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATAT
490 GGGGGGCC---G--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
12235356 TGGCCCTCTATCCCTCGTCAAACCTCGAGAATTCACACCCCCTTAAAAGAGCATTTGAGATTTTA
550 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAA-AGCATTTGAGATTTTA
* * *
12235421 CAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAACGGGGACAC-TTTTTCAAATGGTCACAAA
614 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
12235485 ATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCAAACAAAAATACAGGGATCAC
679 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
12235550 CTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAACTTTAAAAAATCTTGAACCCCAAAAAG
744 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
*
12235615 TTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
809 TTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
12235680 GG
874 GG
* * ** * *
12235682 ACCATTGTATGAATTTACCAGCCGTAAAAATGGCATTTTCATGTCGAAATATGAAGATGTGCCTA
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
* *
12235747 AACCCACCTACCACCCTATCGATCTATGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGT----
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCC
* * * *
12235808 GCCTGCCCGCCTA----ATCATTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 GCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * *
12235869 GATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGACAACATGCATAGGGGGACCCG-GTCGAT
196 GATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTCGAT
* ** *
12235933 CCCCGGCTTGCGCATCCCGCCCCTCTGGTTGGCTGAGCGCCCGCACACTCATTTCATGGGTTGAC
261 CCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGAC
* * * * *
12235998 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATG-GAGTTCA--TTCCTA--GTCTA----A
326 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAAGCGTGCT-AGGATCCGAGGGT-TACGGCA
* * * * ** * * *
12236054 G--CATACTGAG-T---TCAT-TCCCAGTCTAAGCATATGGAGTTCATTTCGTCGGGGCACCATC
389 GCACATGCTGGGCTCGGGCATGTGCTGGTGTCA-CAT-T---TTTC--TTCGTCGGGGCACCATC
* * * *
12236112 -G-TCGAAGAACCTGACCGGTGGCATTGGGGTTTC-AGCGATCGGGGGGGCCGGGGGGTGTGCGC
447 GGATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCAGGGGGGCCGGGGGGTGTGCGC
* * * * * ** *
12236174 ACATGATTTACGATGGGTACTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCACCAAATTTT
511 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
12236239 GAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCTAGTAGCCATTAAAG
576 GAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
12236304 TGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
641 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
** *
12236369 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATGAAGTTT-GGGCCAAAAATCC
706 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *
12236433 TTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC
771 TTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAAC
*
12236498 GAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGG
836 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
12236538 ACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTA
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
* * * *
12236603 AACCCACCTACCACCATATCGATCCACGGTTTACGCATCCCGTCTCTCTGGTCGAAGTAGTGCCC
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCC
*
12236668 GCCCGTCCGC
131 GCCCGCCCGC
12236678 ACATAGAGTG
Statistics
Matches: 2447, Mismatches: 269, Indels: 186
0.84 0.09 0.06
Matches are distributed among these distances:
856 276 0.11
857 176 0.07
859 1 0.00
860 8 0.00
861 1 0.00
862 38 0.02
865 3 0.00
866 5 0.00
867 7 0.00
868 311 0.13
869 7 0.00
870 3 0.00
871 10 0.00
873 18 0.01
876 2 0.00
877 1 0.00
878 2 0.00
882 2 0.00
883 2 0.00
885 1 0.00
886 1 0.00
888 1 0.00
889 2 0.00
892 1 0.00
894 64 0.03
895 1 0.00
897 7 0.00
898 5 0.00
899 1 0.00
900 191 0.08
901 689 0.28
902 99 0.04
903 2 0.00
904 18 0.01
905 36 0.01
906 1 0.00
907 81 0.03
908 316 0.13
909 57 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCC
GCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTCGAT
CCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGAC
TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAAGCGTGCTAGGATCCGAGGGTTACGGCAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGGATCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGG
Found at i:12234230 original size:26 final size:26
Alignment explanation
Indices: 12234201--12234253 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12234191 GTTGACTTAG
* *
12234201 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12234227 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12234253 G
1 G
12234254 ATCAGACCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12236032 original size:26 final size:26
Alignment explanation
Indices: 12236002--12236095 Score: 143
Period size: 26 Copynumber: 3.6 Consensus size: 26
12235992 GTTGACTTAG
*
12236002 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12236028 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12236054 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12236080 GCATATGGAGTTCATT
1 GCATACGGAGTTCATT
12236096 TCGTCGGGGC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 60 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12237676 original size:26 final size:26
Alignment explanation
Indices: 12237646--12237698 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12237636 GTTGACTTAG
* *
12237646 GCATACGGTGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12237672 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12237698 G
1 G
12237699 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12239361 original size:26 final size:26
Alignment explanation
Indices: 12239332--12239384 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12239322 GTTGACTTAG
12239332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12239358 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12239384 G
1 G
12239385 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12240272 original size:27 final size:27
Alignment explanation
Indices: 12240234--12240286 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
12240224 GTTGACTTAG
*
12240234 GCATACGGAGTTCTTTCCCAGTCTAAA
1 GCATACGGAGTTCATTCCCAGTCTAAA
12240261 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12240287 GATCGGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCAGTCTAAA
Found at i:12240636 original size:903 final size:899
Alignment explanation
Indices: 12238508--12241810 Score: 4747
Period size: 903 Copynumber: 3.7 Consensus size: 899
12238498 CTGGCCGATT
* * * * * *
12238508 GAGGGTTGCGGCAGCACATGCTAGGCTTGGGAATGTGTTGGTGCCGCATTTTTCTTCATCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* *
12238573 ACCA---TC--GT-T----GGAGAACCTGATCGACGGCATTGGGGTTCC-AGCGATTGGGGGGGC
66 ACCATCGTCGAGTATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGA-TCGGGGGGC
* ** **
12238627 CAAGGAAGGTGTGCGCACATGATGTGCGATGGGTTATGGTACTTGGCCCTTATATTGGCCCCCTA
129 CAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
12238692 TCCCTCAGCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
194 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * * ** *
12238757 CCAGTAGCTATTAAAATGTCTGAAATGAGAATGCTTTTTTCAAATGGTCACAAAATCTTGTACAC
259 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACAC
* * *
12238822 TTCGAGTTTTTAGCTGAATTTTTATGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAGGT
324 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
12238887 TTGCAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
389 TTG-GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * *
12238952 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTCCACGTGAAAGCCTAAGAGACCATTGTA
453 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
12239017 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAATCCACCT
518 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
12239082 ACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTTGCC-AGCGTAGT----GCCCGCCT
583 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCT
* **
12239142 GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAAT
647 GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAACC
* * * ** *
12239207 TGAATCGAGGGTTGC-AGCAGTAGGATTGGTAGCACATAGAAGGGGACCCGACCGATGCCCAGCT
712 AGACT-GAGGGTTGCGA-CAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGAT-CCCAGCT
* * * * * **
12239271 TGCACATCTCACCCCTCTGGTCGGCTAAGCACCCGCATGCTCGTTTTATGGGTTGACTTAGGCAT
774 TGCGCTTC-CGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCAT
*
12239336 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACC
838 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * *
12239398 GAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGAGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* * * **
12239463 ACCATCGCCAGAGTATCACCGGAGAACCTAACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCC
66 ACCATCGTC-GAGTATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC
* *
12239528 GGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTAT
130 AGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
12239592 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
12239657 CAGTAGCTATTAAAGTGTCTGAAAT-GGGATACTTTTTTCAAATGAACACAAAATCTTGTACAAT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACT
* * * *
12239721 TTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTT
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
12239786 TGTTGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCG
390 TG-GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
12239851 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
454 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
12239916 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
519 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
12239981 CCACCCTATCGATCTACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGC
584 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGC
*
12240046 CCGCCCCGTTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
649 CCG-CCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACC
* * * *
12240111 GGACTGAGGGTTGCGACAACT-GGATCGGTAGCACGCACAGGGGGACTCGACCGATCCTCAGCTT
712 AGACTGAGGGTTGCGAC-AGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCC-CAGCTT
* * * *
12240175 GTGCGTTCCGCCCCTCTGG-CGACTGATCACCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATA
775 GCGC-TTCCGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
12240239 CGGAGTTCTTTCCCAGTCTAAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACC
839 CGGAGTTCATTCCCAGTCT-AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* *
12240301 GAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA-TTTTCTTC-ACTGGGG
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGG
* * * *
12240364 CACCATCGTCGTATTATCGCCTGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGG
65 CACCATCGTCG-AGTATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGG
* * *
12240429 TC-GGGGGGGTGTGCGTACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
128 CCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
12240493 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTCAAGAGCAATTGAGATTTTATAGGTTTGCT
193 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
12240558 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATGTTGTACA
258 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACA
*
12240623 CTTCGAG-TTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
323 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
12240687 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
388 TTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
12240752 CGTGAAAAATAGAAAACTAGTCGTCTTGCGATGAAACTTCACGTGAAGTCTTAAGGGACCATTGT
452 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
12240817 ATGATTTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
517 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
12240882 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCC
582 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCT
* * * * *
12240947 GCCCACCCGCCCGTTTTGTCAGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTGTAAGATCAAAC
647 GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AAC
* ** * * *
12241012 CAGACCGAGGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGGGAGACCCGACTGATCCCCGGCTT
711 CAGACTGAGGGTTGCGACAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGAT-CCCAGCTT
* * * *
12241077 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATA
775 GCGC-TTCCGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
12241142 CGGAGTTGATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGACCACACC
839 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * *
12241203 GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* *
12241268 ACCATCATCGGAGCATCGCCGGAGAACCT-ATCCGACGGCATTGGGGTTCCGACGATCGGGGGGG
66 ACCATCGTC-GAGTATCGCCGGAGAACCTGA-CCGACGGCATTGGGGTTCCGACGATC-GGGGGG
* * *
12241332 CC--GGGGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCC
128 CCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCC
*
12241395 TATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
192 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
12241460 TGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATCATCACAAAATCTTGTAC
257 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTAC
* * * *
12241525 ACTAT-GACTTTTTAGCTGAATTTTTTTGTGCATGTCAACAAAAATACAAGGATCACATCTTCCA
322 ACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
12241589 AGTTTGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAA
386 AGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
*
12241654 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTG
451 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
12241719 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
516 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
12241784 CGACCACCCTACCGATCCCCGGCTTGC
581 CTACCACCCTATCGATCCACGGCTTGC
12241811 ACAACCCACC
Statistics
Matches: 2169, Mismatches: 203, Indels: 69
0.89 0.08 0.03
Matches are distributed among these distances:
890 64 0.03
893 1 0.00
896 2 0.00
897 1 0.00
898 319 0.15
899 95 0.04
900 59 0.03
901 33 0.02
902 438 0.20
903 1049 0.48
904 108 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
ACCATCGTCGAGTATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCA
GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCC
GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAACCAGAC
TGAGGGTTGCGACAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCAGCTTGCGCTT
CCGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
Found at i:12241166 original size:26 final size:26
Alignment explanation
Indices: 12241137--12241189 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12241127 GTTGACTTAG
* *
12241137 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12241163 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12241189 G
1 G
12241190 ATCAGACCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12241907 original size:26 final size:26
Alignment explanation
Indices: 12241868--12241920 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12241858 GTTGACTTAG
12241868 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* *
12241894 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
12241920 G
1 G
12241921 ATCCGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:12242513 original size:730 final size:732
Alignment explanation
Indices: 12241065--12242540 Score: 2159
Period size: 730 Copynumber: 2.0 Consensus size: 732
12241055 AGACCCGACT
* * * * *
12241065 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCACAACCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
12241130 GACTTAGGCATACGGAGTTGATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCAG
66 GACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* ** * *
12241195 ACCACACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTC
131 ACCACACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * * * * *
12241260 GTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTATCCGACGGCATTGGGGTTCCGACGATC
196 ACCAGGGCACCATCACCGGAGCATCACCGGAGAACCTATCAGACGGCATTAGGGTTCCGACAATC
* * *
12241325 GGGGGGGCCGGGGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTGGCCCATATATTGGC
261 GAGGGGGCCGGGGGGTGTGCGCACACGATATGTGATGGGTGCTGGTACCTGGCCCATATATTGGC
* * *
12241390 CCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
326 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGG
*
12241455 TTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATCATCACAAAATCT
391 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCATCACAAAATCT
* * **
12241520 TGTACACTATGACTTTTTAGCTGAATTTTTTTGTGCATGTCAACAAAAATACAAGGATCACATCT
456 TGTACACTATAACTTTTTAGCTGAATTTTTTTGCGCATCACAACAAAAATACAAGGATCACATCT
* * *
12241585 TCCAAGTTTGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTA
521 ACCAAGTTTGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTA
*
12241650 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACA
586 AAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACA
12241715 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
651 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
12241780 CCACCGACCACCCTACC
716 CCACCGACCACCCTACC
* *
12241797 GATCCCCGGCTTGCACAACCCACCCCTCTAGCCGGTTGAGCG-TCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCACAACCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
12241861 GACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCG
66 GACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* *
12241926 A-CAGGACCGAGGGTTACGACAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCA-TTTTCTT
131 ACCA-CACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * *
12241989 CACCAGGGCACCATCGCCGGAGCATCATCGGAGAACCTGA-CAGGCGGCATTAGGGTTCCGTCAA
195 CACCAGGGCACCATCACCGGAGCATCACCGGAGAACCT-ATCAGACGGCATTAGGGTTCCGACAA
* *
12242053 TCGAGGGGGCCGGGGGG-GTGTGCACACGATGTGGTGATGGGTGCTGGTACCTGGCCC-TCATAT
259 TCGAGGGGGCCGGGGGGTGTGCGCACACGATAT-GTGATGGGTGCTGGTACCTGGCCCAT-ATAT
*
12242116 TGG-CCCCCTATCCCTCATCAGACCTCAAGAACTCACA-CCCCTGCAAAGAGCATTTGAGATTTT
322 TGGCCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT-CAAAGAGCATTTGAGATTTT
* * * **
12242179 ATAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAA
386 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCATCACAA
* *
12242244 AATCTTGTACACT-TCAAGTTTTTAGCTGAATTTTTTTGCGCA-CACAAACAAAATTACAAGGAT
451 AATCTTGTACACTAT-AACTTTTTAGCTGAATTTTTTTGCGCATCAC-AACAAAAATACAAGGAT
* * * *
12242307 CACGTCTACCATA-TTTGGGTCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACTACAA
514 CACATCTACCA-AGTTTGGG-CCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCCAAACCACAA
12242371 AAAG-TTTAGAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
577 AAAGTTTTA-AAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
12242435 TTAAGGGATCAA-TGTATGAATTTACAAGCCATACAAATGGCATTGGCACGTAGAAATATGAAGA
641 TTAAGGGA-CAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* **
12242499 TGTGCCTAAACCCACCTACCACCCTATT
705 TGTGCCTAAACCCACCGACCACCCTACC
*
12242527 GATCCACGGCTTGC
1 GATCCCCGGCTTGC
12242541 GCATCCTGTC
Statistics
Matches: 666, Mismatches: 67, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
728 7 0.01
729 194 0.29
730 299 0.45
731 129 0.19
732 37 0.06
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (732 bp):
GATCCCCGGCTTGCACAACCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
ACCACACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
ACCAGGGCACCATCACCGGAGCATCACCGGAGAACCTATCAGACGGCATTAGGGTTCCGACAATC
GAGGGGGCCGGGGGGTGTGCGCACACGATATGTGATGGGTGCTGGTACCTGGCCCATATATTGGC
CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCATCACAAAATCT
TGTACACTATAACTTTTTAGCTGAATTTTTTTGCGCATCACAACAAAAATACAAGGATCACATCT
ACCAAGTTTGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTA
AAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACA
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
CCACCGACCACCCTACC
Found at i:12242800 original size:26 final size:26
Alignment explanation
Indices: 12242770--12242822 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12242760 GTTGACTTAG
*
12242770 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12242796 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12242822 G
1 G
12242823 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12245250 original size:828 final size:826
Alignment explanation
Indices: 12243643--12245285 Score: 2558
Period size: 828 Copynumber: 2.0 Consensus size: 826
12243633 GACGCTCATT
* * ** *
12243643 TCGTGGGTTGACTTAAGCATATGGAGTTCATTCCCAGTCTATGATCGGACAGGACCGAGGGCTGC
1 TCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATAAGACAGGACCGAGGGCTAC
* * * * **
12243708 GGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTC
66 GGCAACACATGCTGGGCTCGAGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTC
* * *
12243773 GGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGTG
131 GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGGTG
*
12243838 TGCGCACTTGATGTGCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCTATCCCTCATCAAA
196 TGCGCACATGATGTGCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCTATCCCTCATCAAA
12243903 CCTTGAAAACTCACACCCCCTTAAAGAGCATTGGAAATTTTACAGGTTTGCTGCCAGTAGCCATT
261 CCTTGAAAACTCACACCCCCTTAAAGAGCATTGGAAATTTTACAGGTTTGCTGCCAGTAGCCATT
*
12243968 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTCAGTTTTTA
326 AAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTCAGTTTTTA
* * * *
12244033 GCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAG
391 GCTGAATTATTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAA
* * *
12244098 CTGCATTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
456 CTGCATTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGATTCAAAAATCATGAAAAATAGA
* * *
12244163 AAAGGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAAATTACAAG
521 AAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAAATTACAAG
*
12244228 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
586 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCG
* * ** * *
12244293 ATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAATGCCCGTCTGCCTGCCCGCCCGCTCG
651 ATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAATGCCCACCCGCCCGCCCGCCCGCTCG
* * * * *
12244358 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
716 TTTCGTCGGTTGGCTTAGGCAAACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* *
12244423 GCGGTAGTAGGATCGACAGCATGCAGAGGGGGACCAGACCGTACGC
781 GCGGCAGTAGGATCGACAGCATGCAAAGGGGGACCAGACCGTACGC
* * * * *
12244469 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGATAAGAC-CGAGCTGAGGGTTA
1 TCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATAAGACAGGA-CCGAGGGCTA
* *
12244533 CGGCAACACATGTTGGGCTC-AGACATGTGCCGGTGCTGCATTTTTCTTCACCGGGGCACCATCG
65 CGGCAACACATGCTGGGCTCGAG-CATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCG
* * *
12244597 TCGGGGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGATGATCGGGGGGGTCGGGGGG
129 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATC-GGGGGGCCGGGGGG
*
12244662 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
193 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACGTGGCCCTTATATTGG-CCCCTATCCCTCAT
* * * *
12244727 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCGAGTAGC
257 CAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTGGAAATTTTACAGGTTTGCTGCCAGTAGC
*
12244792 CATTAAAGTGTTTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACAC-TTCGAGT
322 CATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTC-AGT
*
12244856 TTTTAGCTGAATGT-TTTTATGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGCGG
386 TTTTAGCTGAAT-TATTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGG
* * *
12244920 CCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGATTCAAAAATCGTGAA
450 CCAAAACTGCATT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGATTCAAAAATCATGAA
* *
12244984 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGGCCATTGTATGAAT
514 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAAA
* ** * *
12245049 TTACAAGCGATAAAAATGGCATTGGCGTATAGAAATATGAAGATGTGCTTAAACCAACCTACCAC
579 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCAC
*
12245114 CCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGC
644 CCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAATGCCCACCCGCCCGCCCGC
*
12245179 CCGCTCGTTTCGTCGGTTGGCTTAGGCAAACAGAGTTCATTCCCCGTCTAAGATCAGACCAGACC
709 CCGCTCGTTTCGTCGGTTGGCTTAGGCAAACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
*
12245244 GAGGGTTGGGGCAGTAGGATCGACAGCATGCAAAGGGGGACC
774 GAGGGTTGCGGCAGTAGGATCGACAGCATGCAAAGGGGGACC
12245286 CGAACGATCC
Statistics
Matches: 740, Mismatches: 70, Indels: 12
0.90 0.09 0.01
Matches are distributed among these distances:
825 4 0.01
826 149 0.20
827 67 0.09
828 519 0.70
829 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (826 bp):
TCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATAAGACAGGACCGAGGGCTAC
GGCAACACATGCTGGGCTCGAGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTC
GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCTATCCCTCATCAAA
CCTTGAAAACTCACACCCCCTTAAAGAGCATTGGAAATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTCAGTTTTTA
GCTGAATTATTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAA
CTGCATTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGATTCAAAAATCATGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAAATTACAAG
CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCG
ATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAATGCCCACCCGCCCGCCCGCCCGCTCG
TTTCGTCGGTTGGCTTAGGCAAACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
GCGGCAGTAGGATCGACAGCATGCAAAGGGGGACCAGACCGTACGC
Found at i:12245394 original size:26 final size:25
Alignment explanation
Indices: 12245365--12245423 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 25
12245355 TGACTTAGGA
*
12245365 ATACGGATTTCATTCCCAGTCTAAG
1 ATACGGATTTCATTCCAAGTCTAAG
* *
12245390 CATACAGAGTTCATTCCAAGTCTAAG
1 -ATACGGATTTCATTCCAAGTCTAAG
12245416 AT-CGGATT
1 ATACGGATT
12245424 GGACCGAGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 4 0.14
25 2 0.07
26 22 0.79
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (25 bp):
ATACGGATTTCATTCCAAGTCTAAG
Found at i:12246305 original size:25 final size:26
Alignment explanation
Indices: 12246271--12246320 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
12246261 TCGACTTAGG
12246271 CATACAGAGTTCATTCCC-AGTCTAT
1 CATACAGAGTTCATTCCCAAGTCTAT
*
12246296 CATATAGAGTTCATTCCCAAGTCTA
1 CATACAGAGTTCATTCCCAAGTCTA
12246321 AGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAAGTCTAT
Done.