Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 75 of 190
Found at i:12247193 original size:26 final size:26
Alignment explanation
Indices: 12247156--12247208 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12247146 GTTGACTTAG
*
12247156 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12247182 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12247208 G
1 G
12247209 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12248331 original size:896 final size:894
Alignment explanation
Indices: 12244485--12248797 Score: 5434
Period size: 904 Copynumber: 4.8 Consensus size: 894
12244475 GTTGACTTAG
* ** * * * *
12244485 GCATACGGAGTTCATTCCCTGTCTAAGATAAGACC-GAGCTGAGGGTTACGGCAACACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
12244549 GCTCAGACATGTGCCGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGGGCATCGCCGGAG
65 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
*
12244614 AACCTGACCGGCGGCATTGAGGTTCCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTG-GGTTTCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGT
*
12244679 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12244744 CACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12244809 TGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12244874 ATGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCCTTCCGAAAA
* * **
12244939 AATTTTAAAAAATCCCGAACTGCAAAAAGATTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
*
12245004 TGCCATGAAACTTCACGA-GAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCGATAAAAATGG
518 TGCCATGAAACTTCAC-ATGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
12245068 CATTGGCGTATAGAAATATGAAGATGTGCTTAAACCAACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
12245133 CACATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCCCTCCCGCTCGTTTCGTCGGTTG
* * * *
12245198 GCTTAGGCAAACAGAGTTCATTCCCCGTCTAAGATCAGACCAGACCGAGGGTTGGGGCAGTAGGA
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGA
* * * * *
12245263 TCGACAGCATGCAAAGGGGGACCCGAACGATCCCCAGCTTGCGCATCTCGCCCCTTTGGCCGATT
769 TCGACAGCACGCATAGGGGGACCCGAACGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACT
* * * *
12245328 GAGCGCCTGCACACTCGTTTCGTGAGTTGACTTAGGAATACGGATTTCATTCCCAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
* * ** * *
12245389 GCATACAGAGTTCATTCCAAGTCTAAGATCGGATTGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * * *
12245454 CTCGGGCAAGTTTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACAGAAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*** * * * *
12245519 ACCTGACCGATAGCATTGGAG-TTCTGACGATTGGGGGGGCCGGGGGGGTTTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGG-GTTTC-GATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGT
12245583 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12245648 CACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTATCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12245713 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTCTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12245778 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTACTTTCAAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAA
* * *
12245843 ATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
* * * * *
12245908 GCCGTGAAACTTCCCGTGAAGGCTTAAGGGAG-CACTGTATGAATTTACAAGCCAAAAAAATGGC
519 GCCATGAAACTTCACATGAAGGCTTAAGGG-GCCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
12245972 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTAGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12246037 GCATCCCGTCTCTCTGGTCGATGTAAGGCCCGTGCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGG
648 GCATCCCGTCTCTCTGGCCGACGT-A-----GT--GCCCGCCCTCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
12246102 CGTAAGTATACGGAGTTCATTCCTAGTCTAAGATCAGACC-GAACCGAAGGTTGCGGTAGTAGGA
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGTGGCAGTAGGA
* * * * * * * ** * * *
12246166 TTTGACAGCACGTAGATGGGGGACCCGATCGATCCCCAGCATGTGGAT-CCG-CTTTCTTGCTGG
769 -TCGACAGCACGCATA-GGGGGACCCGAACGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGA
* * * * * *
12246229 CTGTAGCGCCCGTACGTCTCATTTCTTTGGGCTCGACTTAGGCATACAGAGTTCATTCCCAGTCT
832 CTG-AGCGCCCGCACG-CTCGTTTC-GTGGG-TTGACTTAGGAATACGGAGTTCATTCCCAGTCT
12246294 -A
893 AA
* ** ** *
12246295 TCATATAGAGTTCATTCCCAAGTCTAAGATCGGACCTGGACCGAGCATTGCGGCTA-CAGATGCT
1 GCATACGGAGTTCATTCCC-AGTCTAAGATCGGACC-GGACCGAGGGTTGCGGC-AGCACATGCT
**
12246359 GGGCTTC-GGACATGTTGCCAGTGCCACACTTTTTCTTCGGCCGGGGTC-CCAT--TC-G-G--T
63 GGGC-TCAGG-CATG-TGCTGGTGCCACA-TTTTTCTTC-GCCGGGG-CACCATCGTCGGAGCAT
* * * * *
12246416 ---CGGAGAACCTGACTGGCGGCAATGGGGTTCTGATGATC-GGAGGGTTGGGGGGGTGTGGCGC
122 CGCCGGAGAACCTGACCGGCGGCATTGGGTTTC-GATGATCGGGGGGGTCGGGGGGGTGT-GCGC
12246477 ACATGAAATGTGCGATGGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
185 ACATG--ATGTGCGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
12246542 CTCGAGAACTCACA--CCCTTAAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
247 CTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
12246605 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTTGAGTTTTTA
311 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
12246670 GCTTAATTTTTTTGTGCATGCCAAAAAAAATACAACGATCACGTCTACC-A---------AAAA-
376 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAC
* ** **
12246724 TCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATTATGAAAAATAGAA
441 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAA
* * * *
12246789 AATGAGTTGTCTTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
506 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGC
* * * *
12246854 CATAAAAATGGCATTGGCATGGAGAAATATGAGGATGTACCTAAACCCACCTACCAGCCTATCGA
571 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
12246919 TCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCTCCCGCTCATTTCG
636 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCTCCCGCTCGTTTCG
* * *
12246984 TCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATC-GAACCAGACTGAGGGCTGTGG
697 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGG
* * * * * * *
12247048 TAGTAGGGTCGACAGCACGCAGT-GGGGGACCCGGACAATCCTCGGCTTGCGCATCCCACCCCTC
761 CAGTAGGATCGACAGCACGCA-TAGGGGGACCCGAACGATCCCCAGCTTGCGCATCCCGCCCCTC
* * *
12247112 TGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
825 TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAG
12247177 TCTAA
890 TCTAA
* * * * *
12247182 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12247247 CTCGGGCATCTGCTGGTGTCACA-TTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * * *
12247311 ACCTAACCGACGACATTAGGGTTCCGACGATCGGGGGGGCCGGGAGGGTGT--GCACATGATGTT
131 ACCTGACCGGCGGCATT-GGGTTTCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
* * *
12247374 CGACGGATGCTGGTACTTGGCCCCTATATTGGCCCCCTA-CCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12247438 ACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12247503 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12247568 TGCATGCCAATAAAAATACAAGGATCATGTCTACCACGTTTGGGTCCAAAACTTCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAA
* * * *
12247633 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
* * **
12247698 GCCATGAAACTTCACATGAAAGCTTAAGGGGCCATTGTATGAATTTACAAGTCATAAAAATATCA
519 GCCATGAAACTTCACATGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** *
12247763 TTGGCATGCGGAAATATGAAGATGTGCCTAAACCCATGTACCACACTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
12247828 CATCCCGTCTCTTTGGCCGATGTAGTGCCCGCCCTCCCGCCCGTTTCGTTGGTCGGCTTAGGCAT
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * *
12247893 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGTAGGATCGACAGCAC
714 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCAC
* ** * * * * * *
12247958 GTATAGGGGGACCCGGCCGATCCTCGGCTTGCGTATCCCGCCCCTCTGGTCGATTGAGCACCCGC
779 GCATAGGGGGACCCGAACGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
* *
12248023 ACGCTTGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAATCTAA
844 ACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
* * * *
12248074 GCATACGGAGTTCATTCTCAGTTTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12248139 CTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGAGCACCATCATCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
12248204 ACCTGACCGGCGGCATTGGGATTTCGGTGATCGGGAGGGTCGGCGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGG-TTTCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
* * * * *
12248269 GGATAGGTGCTGGTACTTGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12248334 ACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGTTG-CATGTAGCAATTAAAGTGTCTGAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA-GTAGCCATTAAAGTGTCTGAAA
* * *
12248398 TAGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAA-TTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12248462 GTGCATGCCAACAAAAATACAAGGATCAGGCCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAA
12248527 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
* * * *
12248592 TGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGT
518 TGCCATGAAACTTCACATGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12248657 ATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
12248722 GCATCCCGTCTCTCTGGCCGACGTAGTCCCGCCCGCTCGCCTGCCCGCTCGTTTCGTCGGTTGGC
648 GCATCCCGTCTCTCTGGCCGACGTAGT---GCCCG--C-CCT-CCCGCTCGTTTCGTCGGTTGGC
12248787 TTAGGCATACG
706 TTAGGCATACG
12248798 AATCAGACCG
Statistics
Matches: 2938, Mismatches: 383, Indels: 178
0.84 0.11 0.05
Matches are distributed among these distances:
879 1 0.00
880 10 0.00
881 8 0.00
882 2 0.00
883 37 0.01
884 187 0.06
885 40 0.01
886 47 0.02
887 27 0.01
888 33 0.01
889 50 0.02
890 104 0.04
891 2 0.00
892 267 0.09
893 77 0.03
894 201 0.07
895 315 0.11
896 345 0.12
898 5 0.00
900 1 0.00
901 3 0.00
902 46 0.02
903 340 0.12
904 406 0.14
905 195 0.07
906 80 0.03
907 43 0.01
908 27 0.01
909 9 0.00
910 10 0.00
911 9 0.00
912 10 0.00
913 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGTTTCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACATGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGC
ATAGGGGGACCCGAACGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
Found at i:12250389 original size:159 final size:158
Alignment explanation
Indices: 12250129--12250483 Score: 435
Period size: 159 Copynumber: 2.2 Consensus size: 158
12250119 TCATTTTGTC
* * * * * *
12250129 GGTTGGCTTAGGTATACGGATTTCATTCCCAGCCTAAGATTAGACCAAACCAAGGGTTGCGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACCAAGGGTTGCGGCAG
* * * * *
12250194 CAGGATCGGCAGCACACAGAGAGGGACCCGACCGATCCTCGGCTTGTGTATTCTGCC-C-CTCTG
66 CAGGATCGACAGCACACAGAGAGGGACCCGACCGATCCCCGGCCTGCGCA-TC--CCACTCTCTG
* * *
12250257 GGCGGCTAAGCACCCGCACGTTTGTTTCGTG
128 GCCGGCTAAGCACCCGCACGGTCGTTTCGTG
** * *
12250288 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCAAGGGTTGTGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACCAAGGGTTGCGGCAG
* * * *
12250353 CAGGATCGATAGCACACAGAGAGGGACCTGGCCGATCCCCGGCCTGCGCATCCCACTCTTTGGCC
66 CAGGATCGACAGCACACAGAGAGGGACCCGACCGATCCCCGGCCTGCGCATCCCACTCTCTGGCC
* *
12250418 GGCTGAGCGCCCGCACGGTCGTTTCGTG
131 GGCTAAGCACCCGCACGGTCGTTTCGTG
* *
12250446 GGTTGAGTTAAGCATACGGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
12250484 CATACGGAGT
Statistics
Matches: 168, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
156 2 0.01
157 1 0.01
158 68 0.40
159 97 0.58
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (158 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACCAAGGGTTGCGGCAG
CAGGATCGACAGCACACAGAGAGGGACCCGACCGATCCCCGGCCTGCGCATCCCACTCTCTGGCC
GGCTAAGCACCCGCACGGTCGTTTCGTG
Found at i:12250483 original size:26 final size:26
Alignment explanation
Indices: 12250454--12250506 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12250444 TGGGTTGAGT
12250454 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12250480 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12250506 T
1 T
12250507 CAAATCGGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:12252563 original size:896 final size:893
Alignment explanation
Indices: 12250280--12254700 Score: 4890
Period size: 877 Copynumber: 5.0 Consensus size: 893
12250270 CCGCACGTTT
* * * *** * *
12250280 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGA-TCAAGGG
1 GTTTCGT-CGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACT-GAGGG
* * ** * * * * * *
12250344 TTGTGGCAGCAGGATCGATAGCACACAGAGAGGGACCTGGCCGATCCCCGGCCTGCGCATCCCAC
64 TT-TGACAGCAGGATAGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGC
* * * * *
12250409 TCTTTGGCCGGCTGAGCGCCCGCACGGTCGTTTCGTGGGTTGAGTTAAGCATACGGAGTTCATTC
128 CCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * *
12250474 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTCAA-ATC-GGACCGGATCGAGGGTTGCGGCAG
192 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCT-AAGATCAGCACCAGACCGAGGGTTGCGACAG
* * ** * * *
12250537 CACATACTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACAATCGTCGGAGC
256 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGC
* * * * * *
12250602 ATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTTCGACGATCGGGGGTGCCGGGGGGCGTGTGC
321 ATCGCCGGAGAACCTGACCGGCGGCATTTGGGTTCCGACGATCGGGGG-GGCGAGGGG-GTGTGC
* * *
12250667 GCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACA
384 GCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
12250732 TCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
449 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * ** *
12250796 AGTGT-TAGAAATGGGGACACTTTATTCAAATGGTCGCAAAATCTTGTACACTTTGAGTTTTAAG
514 AGTGTCT-GAAATGGGGACACTTT-TTCAAATGGTCACAAAATCTTGTAGACTTCAAGTTTTTAG
* * * *
12250860 CTGAGTTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAAC
577 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAC
* * *** *
12250925 TCCTACCGAAAAAAATTTAAAAAATCTCGAACTACAAAAACTTTCAAAAATCA-TGAAAAAT-AG
642 TCCTTCC-AAAAAAATTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAAG
* * *
12250988 AAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGG-CCAATGTATGAATTTACA
705 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACA
***
12251052 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTAT
769 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC-TACCACCCTAT
* * * * * *
12251117 CGATCCACAGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCTCGCCAGCCCGCT
833 CGATCCACGGCTTGCGCAT-CCGTCTCTCT-GCTGGAGTA-TGCCCGCCCGCCCACC-G-CCGCT
12251182 C
893 C
***
12251183 GTTTCGTCGGTTGGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGG
1 GTTTCGTC-GTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGG
** * * ** * * *
12251247 TTGTGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGC
64 TT-TGACAGCAGGATAGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCG-
* * *
12251312 CCCTCTGGCCGACTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATT
127 CCCTCTGGCCGGCTGAGCGCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* *
12251377 CCCAG--T---C-T--A-AG----------GTC--AGATCAG-A-C-GA--G-GGTTTGCGGCAG
191 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGCACCAGACCGAGGGTTGCGACAG
* *
12251415 CAGATGCTGGGCTCGGGCATGTGCTGGT-CCACA-TTTTCTTCACCGTGGCACCATCGCCGGAAG
256 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGG-AG
* * * *
12251478 TATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGC
320 CATCGCCGGAGAACCTGACCGGCGGCATTTGGGTTCCGACGATCGGGGGGG-CGAGGGGGTGTGC
*
12251543 GCCCATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
384 GCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
12251608 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAA
449 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
12251673 AGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATGTTGTAGACTTCAAATTTTTAGC
514 AGTGTCTGAAATGGGGACACTTTTT-CAAATGGTCACAAAATCTTGTAGACTTCAAGTTTTTAGC
12251738 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACT
578 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACT
* * * *
12251803 ACTTTCAAAAATATTTTAAAAATCTTGAACCGTAAAAAGTTTCAAAAATAGTG-AAAATAA-AAA
643 CCTTCCAAAAAAATTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAAGAAA
*
12251866 ACGAGTCGTCTTG-CATG-AACTTCACGTGATGGCTTAAGGGA-CATTGTATGAATTTACAAGCC
708 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
12251928 ATAAAAATGGCATTTGGCACATAGAAATATGAAGATGTGCCT-AACCCACTACCACCTTATCGAT
773 ATAAAAATGGCA-TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTACCACCCTATCGAT
*
12251992 TCACGGCTTGCGCATCCGTCTCTCTCGCTGGAGTATGCCCCGCTCCGCCCACCTGCCTGCTC
837 CCACGGCTTGCGCATCCGTCTCTCT-GCTGGAGTATG-CCCGC-CCGCCCACC-GCC-GCTC
*
12252054 GTTTCGTCGATTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGGT
1 GTTTCGTCG-TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGGT
* * * * * *
12252119 TATGATAGCAGGATCGGTAGCACATAGAGGGGGACCCGGTCGATCCCCGTCTTACGCATCCCGTC
65 T-TGACAGCAGGATAGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCG-C
* * *
12252184 CCTCTGGCCAGCTGAGCGTCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTC
128 CCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* *
12252249 CCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATC-GCACCAGACCGAGGGCTT-CAACAG
192 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGCACCAGACCGAGGG-TTGCGACAG
* **
12252312 CA-ATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
256 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGC
* *
12252376 ATCGCCGGAGAACCTGACCGGCGGCATTTGGGTTCCGACAATCGGGGGGGCGGGGGGGTGTGCGC
321 ATCGCCGGAGAACCTGACCGGCGGCATTTGGGTTCCGACGATCGGGGGGGCGAGGGGGTGTGCGC
* * *
12252441 ACATGATGTGTGATGGGTGCTGGTAATTGGCCCTTATATTGG-CACCTATCCCTCATCAAACCTC
386 ACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
12252505 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTATAGGTTTGCTGCCAGTAGCCATT-AA
451 GAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
12252569 GTGTC-GAAAATAGGCACACGTTTTTCAAATGGTCACAAAATCTTGTAAACTTTAAGTTTTTAGC
515 GTGTCTG-AAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTAGACTTCAAGTTTTTAGC
* * *
12252633 TCAATTTTTTT-TGCATGCCAAAAAAAATACAAGGAATCACCTCTACCAAGTTTGGGGGC-TAAA
578 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG-ATCACGTCTACCAAGTTT-GGGGCAAAAA
*** * *
12252696 CTCCTTCCAAAAAAATTTTAAAAAAATCCCAAACCGT-AAAAGTTTCAGAAATCGTGAAAAATAA
641 CTCCTTCCAAAAAAA-TTT-AAAAAATCTTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAA
* *
12252760 -AAAACGAGTCGTCTTCCCATGAAACTTCACGTGGAAGGCTTAAGGGACCATTGTATGAATTTTC
704 GAAAACGAGTCGTCTTGCCATGAAACTTCACGT-GAAGGCTTAAGGGACCATTGTATGAA-TTTA
* * * *
12252824 CAAGCCATAAAAGTGGCATTTGCACGTAGAAATATGAATATGTGCCTAAACCCACTACCACCC-A
767 CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTACCACCCTA
* * * *
12252888 TCGATCCATGGCTTGCGCATCCCGCCTCTCTGGC-CGACGTAGTGCCCG-CCG-CC-CCG-C-AT
832 TCGATCCACGGCTTGCGCAT-CCGTCTCTCT-GCTGGA-GTA-TGCCCGCCCGCCCACCGCCGCT
12252947 C
893 C
* * * * * * * *
12252948 GTTTCTTCGGTGGCTTAGGCGTACGGAGTTCATT-CCAGTCTAAGATTGGACCGGGCTGAAGG-T
1 GTTTCGTCGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGGTT
* * *
12253011 TGCAGCAGTAGGATAGGCAACACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCC
66 TG-A-CAGCAGGATAGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCC
*
12253076 CTCTGGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTATGGCATACGGAGTTCATTC
129 CTCTGGCCGGCTGAGCGCC-GCACGCTCGTTTCGTGGGTTGACTTA-GGCATACGGAGTTCATTC
* *
12253141 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCGAACCGGACCGAG
192 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG-AT-C--AG------C--ACCAGACCGAG
* * ** * *
12253206 GGTTGCGACAGCACATGCTTGGCTCGGGCATGCGCTGGTGCCGTATTTTTCTTCCGCCTGGGCAC
245 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT-CACCGGGGCAC
* * * * * * * *
12253271 CATCGCCAGAGCATCGCCGGAGAACCTAACCGGCAGCGTTAGGGTTTCGACGATAGGGGGGCCG-
309 CATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTTGGGTTCCGACGATCGGGGGGGCGA
* * * *
12253335 GGGGGTGTAAACGCACATGATGTGCGAT-GGTGCTGGTACTTGGCCGTTATATCGGCCCCC-ATC
374 GGGGGTGT--GCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
12253398 CCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTTCCTAC
437 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGC
* * * *
12253463 CAGTAGCGCATTAAAGTGCCCGAAAT-------CTCTGT---A--G-CAC----TC-TG-AG---
501 CAGTAGC-CATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTAGACT
*
12253506 T----TTTTT-GCTGAATTTTTTTGTGCATACCAAAAAAAAATACTAAGGATCACGTCTACCAAG
565 TCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATAC-AAGGATCACGTCTACCAAG
* * * **
12253566 TTTGGAGCCCAAAACT-CTTCCAAAAAAAATTTAAAAAATCTTGAACCCCG-CAAAAGTTTTGAA
628 TTTGG-GGCAAAAACTCCTTCC-AAAAAAATTTAAAAAATCTTGAA--CCGTAAAAAGTTTCAAA
*
12253629 AATAGTGAAAAA-AAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCA
689 AATAGTGAAAAATAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
12253693 TTATATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
754 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
* * * * *
12253758 CACTACCACCCTATCAATTCACGGCTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTACCCGCCCG
819 CACTACCACCCTATCGATCCACGGCTTGCGCATC-CGTCTCTCTGCT-GGAGTA-TGCCCGCCCG
12253823 CCCACCCGCCCGCTC
881 CCCA-CCG-CCGCTC
* * *
12253838 GTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATGGGACTAGATTGAGGG-
1 GTTTCGTC-GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGGT
* *
12253902 TTGCTACAGCAGGATTA-GCAGCACACAGAGAGGGACCCGATCGATCCCCGACTTGCGCATCCCG
65 TTG--ACAGCAGGA-TAGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCG
* * ** *
12253966 CCCCTCTAGCTGGCTGAGCGCCCGCACGCTCGTTTTATGGCTTGACTTAGGCATACGGAGTTCAT
127 -CCCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
12254031 TCCTAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTACGACA
190 TCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGCACCAGACCGAGGGTTGCGACA
* ** * * ** **
12254095 GCACATACTGGGCTCGAACATGTGCAGGTGCCACATTTTTCTTCATCGGGGTGCCATCATCGGAG
255 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAG
* ** * * * *
12254160 CAACGCTAGAGATCCTGACCGACGGCA-TTGAGGTTCCGACGATCGAGGGGGCCAAGGGGGTGTG
320 CATCGCCGGAGAACCTGACCGGCGGCATTTG-GGTTCCGACGATCG-GGGGGGCGAGGGGGTGTG
12254224 CGCACATGATGTGAGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTC--CAAAC
383 CGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
12254286 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCACTA
448 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
12254351 AAGTGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTTA-
513 AAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTAGACTTCAAGTTTTTAG
* *
12254415 CGTGAATTTTTTTGTGCAAGCC--AAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAA
577 C-TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAA
* ** ** *
12254478 A-TCCATCTGAAAAAATTTAAAAAAATCTTGAACC-TCAAAAAAGTTTTGAAAATAATGAAAAAT
640 ACTCCTTCCAAAAAAATTT-AAAAAATCTTGAACCGT--AAAAAGTTTCAAAAATAGTGAAAAAT
*
12254541 AAGAAAACGAGTCATCGTTTGCCATTGAAACTTCACGTGAAGGCTTAAGGGA-CATTGTATGAAT
702 AAGAAAACGAGTCGTC--TTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
12254605 TTACAAGCCATGAAAATGTCATTGGCACGTAGAAATATGAAGATATGCCTAAA-CC-CTACCACC
764 TTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTACCACC
*
12254668 CTATCGATCCACGGCTTGCGCATCCATCT-TCTG
829 CTATCGATCCACGGCTTGCGCATCCGTCTCTCTG
12254701 GTCGACGTAG
Statistics
Matches: 3017, Mismatches: 334, Indels: 339
0.82 0.09 0.09
Matches are distributed among these distances:
869 2 0.00
870 24 0.01
871 211 0.07
872 44 0.01
873 47 0.02
874 4 0.00
875 34 0.01
876 158 0.05
877 274 0.09
878 114 0.04
879 83 0.03
880 10 0.00
881 14 0.00
882 91 0.03
883 107 0.04
884 74 0.02
885 5 0.00
886 2 0.00
887 4 0.00
889 5 0.00
890 18 0.01
891 72 0.02
892 256 0.08
893 68 0.02
894 41 0.01
895 153 0.05
896 135 0.04
897 100 0.03
898 50 0.02
899 84 0.03
900 70 0.02
901 63 0.02
902 127 0.04
903 157 0.05
904 62 0.02
905 19 0.01
906 49 0.02
907 152 0.05
908 23 0.01
909 10 0.00
910 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GTTTCGTCGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGGTT
TGACAGCAGGATAGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCT
CTGGCCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGCACCAGACCGAGGGTTGCGACAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGC
CGGAGAACCTGACCGGCGGCATTTGGGTTCCGACGATCGGGGGGGCGAGGGGGTGTGCGCACATG
ATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTAGACTTCAAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAA
AAAAATTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTACCACCCTATCGATCCACGGCTT
GCGCATCCGTCTCTCTGCTGGAGTATGCCCGCCCGCCCACCGCCGCTC
Found at i:12253160 original size:26 final size:26
Alignment explanation
Indices: 12253124--12253192 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
12253114 TTGACTTATG
12253124 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12253150 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12253176 GCATACAGAGTTCATTC
1 GCATACGGAGTTCATTC
12253193 GAACCGGACC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12253436 original size:907 final size:892
Alignment explanation
Indices: 12251361--12253476 Score: 2690
Period size: 895 Copynumber: 2.3 Consensus size: 892
12251351 GTTGACTTAG
* * * * *
12251361 GCATAC-GAAGTTCATTCCCAGTCTAAGGTCAG-ATCAGA-CGAGGGTTTGCGGCAGCAGATGCT
1 GCATACAG-AGTTCATTCCCAATCTAAGATC-GCACCAGACCGAGGGCTTGCGACAGCA-ATGCT
* * * *
12251423 GGGCTCGGGCATGTGCTGGT-CCACA-TTTTCTTCACCGTGGCACCATCGCCGGAAGTATCGTCG
63 AGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCG-GGCACCATCGCCGG-AGCATCGCCG
* * *
12251486 GAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCCCATGA
126 GAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGA
*
12251551 TGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
190 TGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-ATCCCTCATCAAACCTCGAGAAC
* *
12251616 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTG
254 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTG
* * * * *
12251681 AAATGGGGACACTTTTTCCAAATGGTCACAAAATGTTGTAGACTTCAAATTTTTAGCTGAATTTT
318 AAATAGGCACACTTTTTCCAAATGGTCACAAAATCTTGTAAACTTCAAATTTTTAGCTCAATTTT
* *
12251746 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTACTTTCAA
383 TTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCAAAAACTACTTCCAA
* ***
12251811 AAATATTTTAAAAATCTTGAACCGTAAAAAGTTTCAAAAATAGTGAAAATAAAAAACGAGTCGTC
448 AAAAATTTTAAAAATCCCAAACCGTAAAAAGTTTCAAAAATAGTGAAAATAAAAAACGAGTCGTC
* *
12251876 TTGCATGAACTTCACGTGATGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCAT
513 TTCCATGAACTTCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
12251941 TTGGCACATAGAAATATGAAGATGTGCCTAACCCACTACCACCTTATCGATTCACGGCTTGCGCA
578 TTGGCACATAGAAATATGAAGATGTGCCTAACCCACTACCACCTCATCGATCCACGGCTTGCGCA
* * * *
12252006 TCCGTCTCTCTCGCTGGAGTATGCCCCGCTCCGCCCACCTGCCTGCTCGTTTCGTCGATTAGCTT
643 TCCGCCTCTCTCGCTCGAGTATGCCCCGC-CCGCCCACCTGCC-GATCGTTTCGTCGAGTAGCTT
* * *
12252071 AGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGGTTATGATAGCAGGATCGG
706 AGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAAGGTTATGACAGCAGGATAGG
* * * *
12252136 TAGCACATAGAGGGGGACCCGGTCGATCCCCGTCTTACGCATCCCGTCCCTCTGGCCAGCTGAGC
771 CAACACACAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCGTCCCTCTGGCCAGCTGAGC
*
12252201 GTCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
836 GTCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
12252258 GCATACAGAGTTCATTCCCAATCTAAGATCGCACCAGACCGAGGGCTT-CAACAGCAATGCTAGG
1 GCATACAGAGTTCATTCCCAATCTAAGATCGCACCAGACCGAGGGCTTGCGACAGCAATGCTAGG
*
12252322 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-CCGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
12252387 ACCTGACCGGCGGCATTTGGGTTCCGACAATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGT
130 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGA
* * *
12252452 GATGGGTGCTGGTAATTGGCCCTTATATTGGCACCTATCCCTCATCAAACCTCGAGAACTCACAC
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCATCCCTCATCAAACCTCGAGAACTCACAC
*
12252517 CCCCTTAAAGAGCATTTGAGATTTTTATAGGTTTGCTGCCAGTAGCCATTAAGTGTC-GAAAATA
260 CCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATTAAGTGTCTG-AAATA
* *
12252581 GGCACACGTTTTT-CAAATGGTCACAAAATCTTGTAAACTTTAAGTTTTTAGCTCAATTTTTTT-
323 GGCACAC-TTTTTCCAAATGGTCACAAAATCTTGTAAACTTCAAATTTTTAGCTCAATTTTTTTG
* *
12252644 TGCATGCCAAAAAAAATACAAGGAATCACCTCTACCAAGTTTGGGGGC-TAAACTCCTTCCAAAA
387 TGCATGCCAAAAAAAATACAAGG-ATCACCTCTACCAAGTTT-GGGGCAAAAACTACTTCCAAAA
* *
12252708 AAATTTTAAAAAAATCCCAAACCGT-AAAAGTTTCAGAAATCGTGAAAAATAAAAAACGAGTCGT
450 AAATTTT--AAAAATCCCAAACCGTAAAAAGTTTCAAAAATAGTG-AAAATAAAAAACGAGTCGT
* *
12252772 CTTCCCATGAAACTTCACGTGGAAGGCTTAAGGGACCATTGTATGAATTTTCCAAGCCATAAAAG
512 CTT-CCATG-AACTTCACGT-GAAGGCTTAAGGGA-CATTGTATGAA-TTTACAAGCCATAAAAA
* * *
12252837 TGGCATTT-GCACGTAGAAATATGAATATGTGCCTAAACCCACTACCACC-CATCGATCCATGGC
572 TGGCATTTGGCACATAGAAATATGAAGATGTGCCT-AACCCACTACCACCTCATCGATCCACGGC
* *
12252900 TTGCGCATCCCGCCTCTCTGGC-CGACGTAGTG-CCCG-CCG-CC-CC-G-C-ATCGTTTCTTCG
636 TTGCGCAT-CCGCCTCTCTCGCTCGA-GTA-TGCCCCGCCCGCCCACCTGCCGATCGTTTCGTCG
* * * * * *
12252957 -GTGGCTTAGGCGTACGGAGTTCATT-CCAGTCTAAGATTGGACCGGGCTGAAGG-T-TGCAGCA
698 AGTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAAGGTTATG-A-CA
* *
12253018 GTAGGATAGGCAACACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCG-CCCTCTGG
761 GCAGGATAGGCAACACACAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCGTCCCTCTGG
* * *
12253082 CCGGTTGAGCG-CCTGCACGCTCGTTTCGTGGGTTGACTTATGGCATACGGAGTTCATTCCCAGT
826 CCAGCTGAGCGTCC-ACACGCTCGTTTCGTGGGTTGACTTA-GGCATACGGAGTTCATTCCCAGT
12253146 CTAA
889 CTAA
* * *
12253150 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCGAACCGGACCGAGGG-TTGCGA
1 GCATACAGAGTTCATTCCCAATCTAAG-AT-C---G------C--ACCAGACCGAGGGCTTGCGA
* * ** *
12253214 CAGCACATGCTTGGCTCGGGCATGCGCTGGTGCCGTATTTTTCTTCCGCCTGGGCACCATCGCCA
53 CAGCA-ATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT-CGCC-GGGCACCATCGCCG
* * * * *
12253279 GAGCATCGCCGGAGAACCTAACCGGCAGCGTTAGGGTTTCGACGAT-AGGGGGGCCGGGGGGTGT
115 GAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT
* * * * *
12253343 AAACGCACATGATGTGCGAT-GGTGCTGGTACTTGGCCGTTATATCGGCCCCCATCCCTTATCAA
180 --GCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCATCCCTCATCAA
* *
12253407 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTTCCTACCAGTAGCGC
243 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCCAGTAGC-C
12253472 ATTAA
306 ATTAA
12253477 AGTGCCCGAA
Statistics
Matches: 1067, Mismatches: 104, Indels: 85
0.85 0.08 0.07
Matches are distributed among these distances:
890 4 0.00
891 44 0.04
892 125 0.12
893 23 0.02
894 35 0.03
895 147 0.14
896 132 0.12
897 129 0.12
898 37 0.03
899 14 0.01
900 16 0.01
901 56 0.05
902 55 0.05
903 3 0.00
904 2 0.00
905 19 0.02
906 58 0.05
907 146 0.14
908 22 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCGCACCAGACCGAGGGCTTGCGACAGCAATGCTAGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGCACCATCGCCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGAG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGTGTCTGAAATAGGC
ACACTTTTTCCAAATGGTCACAAAATCTTGTAAACTTCAAATTTTTAGCTCAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCAAAAACTACTTCCAAAAAAATTT
TAAAAATCCCAAACCGTAAAAAGTTTCAAAAATAGTGAAAATAAAAAACGAGTCGTCTTCCATGA
ACTTCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCATTTGGCACA
TAGAAATATGAAGATGTGCCTAACCCACTACCACCTCATCGATCCACGGCTTGCGCATCCGCCTC
TCTCGCTCGAGTATGCCCCGCCCGCCCACCTGCCGATCGTTTCGTCGAGTAGCTTAGGCATACAG
AGTTCATTCCCAGTCTAAGATGGGACCAGACTGAAGGTTATGACAGCAGGATAGGCAACACACAG
AGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCGTCCCTCTGGCCAGCTGAGCGTCCACACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12256135 original size:26 final size:26
Alignment explanation
Indices: 12256106--12256158 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12256096 GTTGACTTAG
* *
12256106 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12256132 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12256158 G
1 G
12256159 ATCAGACCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12256875 original size:26 final size:26
Alignment explanation
Indices: 12256836--12256888 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12256826 GTTGACTTAG
12256836 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
12256862 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
12256888 G
1 G
12256889 ATCCGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:12257770 original size:26 final size:26
Alignment explanation
Indices: 12257740--12257792 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12257730 GTTGACTTAG
*
12257740 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12257766 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12257792 G
1 G
12257793 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12260342 original size:26 final size:25
Alignment explanation
Indices: 12260313--12260370 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
12260303 TGACTTAGGA
*
12260313 ATACGGATTTCATTCCCAGTCTAAG
1 ATACGGATTTCATTCCAAGTCTAAG
* *
12260338 CATACAGAGTTCATTCCAAGTCTAAG
1 -ATACGGATTTCATTCCAAGTCTAAG
12260364 AT-CGGAT
1 ATACGGAT
12260371 CGGACCGAGG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 3 0.11
25 2 0.07
26 22 0.81
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.29
Consensus pattern (25 bp):
ATACGGATTTCATTCCAAGTCTAAG
Found at i:12261252 original size:25 final size:26
Alignment explanation
Indices: 12261215--12261264 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
12261205 CTGACTTAGG
12261215 CATACAGAGTTCATTCCCAGTCTAAT
1 CATACAGAGTTCATTCCCAGTCTAAT
12261241 CATACA-AGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
12261265 GATCGGACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.32, C:0.28, G:0.10, T:0.30
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAT
Found at i:12262138 original size:26 final size:26
Alignment explanation
Indices: 12262099--12262151 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12262089 GTTGACTTAG
12262099 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
12262125 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
12262151 G
1 G
12262152 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:12262545 original size:895 final size:893
Alignment explanation
Indices: 12259445--12263945 Score: 5995
Period size: 895 Copynumber: 5.0 Consensus size: 893
12259435 GTTGACTTAG
* * * * * *
12259445 GCATACGGAGTTCATT--CTGTCTAAGATCAGACCGAGCTGAGGGTTGCGGCAACACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGA-CCGAGGGTTGCGGCAGCACATGCTGGG
*** * ** * * * *
12259508 CTCAAACATGTGCCGGTGCTGCATTTTTCTTCACCGGGGCACCATCACCGGGGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCC-GGGCACCATCGCCGGAGCATCGTCGGAGA
*
12259573 ACCTGACCGGCGGCATTGAGGTTCCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGGCGGCATTG-GGTTCCGACGATCGGGGGGGTCGGGGGGGTGT--GCACATGATGTG
*
12259638 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAG-ACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12259701 ACCCCTTAATGAGCATTTTGATATTTTACAGGTTTGCTGCGAGTAGCCCATT-AAGTGTTTGAAA
256 ACCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAA
* *
12259765 TGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12259830 ATGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGCGGCCAAAACTCCTTCCAAAAA
384 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG-GGCCAAAACTCCTTTCAAAAA
* * * **
12259895 AATTTTAAAAAATCCCGAACTGCAAAAAGATTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
448 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
* * *
12259960 TGCCATGAAACTTCACAAGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCGATAAAAATGGC
513 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * *
12260025 ATTGGCGTATAGAAATATGAAGATGTGCTTAAACCAACCTACCACCCTATCGATCCACGGCTTGC
578 ATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12260090 ACATCCCGTCTCTCTGGCTGGCGTAGTGCCCACCCG----CCCGCTTGTTTCGTCGGTTGGCTTA
643 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
12260151 GGCAAACAGAGTTCATTCCCCGTCTAAGATCAGACCAGACCGAGGGTTGGGGCAGTAGGATCGAC
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGTAGGATCGAC
* * * * * * * *
12260216 AGCATGCAAAGGGGGACCCGAACGATCCCCAGCTTGCGCATCTCGCCCTTTTGGCCGACTGAGCG
773 AGCACGCAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
12260281 CCTGCACACTCGTTTCGTGGGTTGACTTAGGAATACGGATTTCATTCCCAGTCTAA
838 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12260337 GCATACAGAGTTCATTCCAAGTCTAAGATCGGATCGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
12260402 CTCGGGCAAGTTTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-ACAGAAG
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-CCGGGCACCATCGCCGGAGCATCGTC-GGAG
*** * * *
12260466 AACCTGACCGATAGCATTGGAGTTCCGACGATTGGGGGGGCCGGGGGGGTTTGCGCACATGATGT
128 AACCTGACCGGCGGCATTGG-GTTCCGACGATCGGGGGGGTCGGGGGGG--TGTGCACATGATGT
12260531 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12260596 CACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTATCTGAAA
255 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12260661 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTCTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12260726 ATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTCGGGCCAAAACTACTTTCAAAAAA
384 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAACTCCTTTCAAAAAA
* *
12260791 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
449 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
* * * * * *
12260856 GCCGTGAAACTTCCCGTGAAGGCTTAAGGGAGCACTGTATGAATTTACAAGCCAAAAAAATGGCA
514 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * * *
12260921 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTAACGATCCACGGCTTGCG
579 TTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12260986 CATCCCGTCTCTCTGGCCGACGTAAG-GCCCGTGAGCCCGCCCGCCTGCTCGTTTCGTCAGTTGG
644 CATCCCGTCTCTCTGGCCGACGT-AGTGCCC----GCCCGCCCTCCCGCTCGTTTCGTCGGTTGG
* * * * * *
12261050 CGTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACCGAAGGTTGCGGTAGTAGAA
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGTAGTAGGA
* * * * * * *
12261114 TTGACAGCACGCAGAGGGGGACCC-GATCGATCCCCAGCATGTGGATCCCGCCTCTCTGGCTGGC
768 TCGACAGCACGCAGAGGGGGACCCGGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
12261178 TGAGCGCCCGTACGCTCATTTCTTGGGCTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
832 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
12261240 TCATAC-AAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGCATTGCGGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12261304 CTCGAGCATGTGCCGGTGCCACATTTTTCTTCGCC-GG-------G--GTACCATCGTCGGAGAA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGCACCATCGCCGGAGCATCGTCGGAGAA
* * *
12261359 CCTGACTGGCGGCAATAGGGTTCCGACGATC-GGGGGGTTGGGGGGGTGTGCGCACATGATGTGC
130 CCTGACCGGCGGC-ATTGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGT--GCACATGATGTGC
12261423 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
12261488 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
12261553 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTTGAGTTTTTAGCTGAATGTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
12261618 CATGCCAAAAAAAATACAACGATCACGTCTACCAA-TTTGGCGCCAAAAATCCTTTCGAAAAAAT
387 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG-GCCAAAACTCCTTTCAAAAAAAT
** ** * * *
12261682 TTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAATGAGTTGTCTTAC
451 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGC
12261747 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
516 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
12261812 GGCATGGAGAAATATGAGGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGCTTGCGCA
581 GGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
12261877 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCTCCCGCTCATTTCGTCGATTGGCTTAGCC
646 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* *
12261942 ATACGGAGTTCATTCCAAGTCTAAGATC-GAACCAGACTGAGGGTTGTGGTAGTAGGGTCGACAG
711 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGTAGTAGGATCGACAG
* * * *
12262006 CACGCAGTGGGGGACCCGGACGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCT
775 CACGCAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
12262071 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12262125 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12262190 CTCGGGCATCTGCTGGTGTCACA-TTTTCTTCACCAGGGCACCATCGCCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCC-GGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
12262254 ACCTAACCGGCGACATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACATGATGTGCG
129 ACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCACATGATGTGCG
* * *
12262319 ACGGATGCTGGTACTTGGCCCCTATATTGGCCCCCTA-CCCTCATCAAACCTCGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
12262383 ACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGG
258 -CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
12262448 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
12262513 CATGCCAACAAAAATAAAAGGATCATGTCTACCACGTTTGGGTCCAAAACTTC-TTCCAAAAAAT
387 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG-CCAAAACTCCTTTCAAAAAAAT
* * *
12262577 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGC
451 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGC
* * * **
12262642 CATGAAACTTCACATGAAAGCTTAAGGGGCCATTGTATGAATTTACAAGTCATAAAAATATCATT
516 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * *
12262707 GGCATGCG-GAAATATGAAGATGTGCCTAAACCCATGTACCACACTATCGATCCACGGCTTACGC
581 GGCATG-GAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
12262771 ATCCCGTCTCTTTGGCCGACGTAGTGCCTGCCCG---T-CCGCCCGTTTCGTCGGTCGGCTTAGG
645 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGG
* *
12262832 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGTAGGATCGACAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGTAGGATCGACAG
* * * * * * ** *
12262897 CACGCATAGGGGGACCCGGCCGATCCCCGACTTGCGTATCCTGCCCCTCTGGTCGATTGAGCACC
775 CACGCAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
** * *
12262962 CGCACGCTTATTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAATCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12263016 GCATACGGAGTTCATTCTCAGTTTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12263081 CTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGAGCACCATCGTCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGG-GCACCATCGCCGGAGCATCGTCGGAGA
* ** * *
12263146 ACCTGACCGGCGGCATTGGGATTTCGGTGATCGGGAGGGTCGGCGGGGTGTGCGCACATGATGTG
129 ACCTGACCGGCGGCATTGGG-TTCCGACGATCGGGGGGGTCGG-GGGG-GTGTGCACATGATGTG
* * * *
12263211 GGATAGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12263276 ACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGTTG-CATGTAGCAATTAAAGTGTCTGAAT
256 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA-GTAGCCATTAAAGTGTCTGAAA
* * *
12263340 TAGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAA-TTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12263404 GTGCATGCCAACAAAAATACAAGGATCAGGCCTACCAAGTTTAGGGCCAAAACTCC-TTCTGAAA
384 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTTC-AAAA
12263468 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTC
447 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTC
* *
12263533 TTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12263598 TATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
577 CATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
12263663 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCTGCCCGCTCGTTTCGTCGGTTG
642 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CCT-CCCGCTCGTTTCGTCGGTTG
* * * *
12263728 GCTTAGGCATATGAAGTTTATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGTGGTAGCAGG
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGTAGTAGG
* * *
12263792 ATCGACAGCACGTAGAGGGGGACCC-GACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGG
767 ATCGACAGCACGCAGAGGGGGACCCGGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* **
12263856 CTGAGCACCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
12263919 GCATACGGAGTTCAATCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
12263946 CATGCGGTAC
Statistics
Matches: 3155, Mismatches: 380, Indels: 137
0.86 0.10 0.04
Matches are distributed among these distances:
884 1 0.00
885 196 0.06
886 71 0.02
887 3 0.00
888 8 0.00
889 370 0.12
890 91 0.03
891 294 0.09
892 89 0.03
893 7 0.00
894 298 0.09
895 1020 0.32
896 204 0.06
897 28 0.01
899 4 0.00
900 2 0.00
901 3 0.00
902 81 0.03
903 385 0.12
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGCACCATCGCCGGAGCATCGTCGGAGAAC
CTGACCGGCGGCATTGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAACTCCTTTCAAAAAAATTTTAA
AAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGTAGGATCGACAGCACGCA
GAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12263924 original size:26 final size:26
Alignment explanation
Indices: 12263893--12263948 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12263883 GTTGACTTAG
*
12263893 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
12263919 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
12263945 GCAT
1 GCAT
12263949 GCGGTACACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:12266110 original size:26 final size:26
Alignment explanation
Indices: 12266071--12266123 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12266061 GTTGACTTAG
12266071 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12266097 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12266123 G
1 G
12266124 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12267004 original size:26 final size:26
Alignment explanation
Indices: 12266974--12267026 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12266964 GTTGACTTAG
12266974 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12267000 GCATACGGAGTTGATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12267026 G
1 G
12267027 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12268794 original size:26 final size:26
Alignment explanation
Indices: 12268758--12268810 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12268748 GTTAACTTAG
*
12268758 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12268784 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12268810 G
1 G
12268811 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12271756 original size:874 final size:874
Alignment explanation
Indices: 12264311--12272362 Score: 9522
Period size: 878 Copynumber: 9.1 Consensus size: 874
12264301 GTCAGTTGGT
* * *
12264311 TTAGGCATACGGAGTTCATTCCCAGTGTAAG-ATCG-GA-C-CAGACCGAGGGTTGCGGCAGCAC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGAGATCACAGACCAAGGGTTGTGGCAGCAC
** *
12264372 ATGCCAGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCAT---------T-G
66 ATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAGCATCG
* * ** * * *
12264427 CCGGAGAACATGGCCGATGACATTTGGGTTCCGACGATCGGGGGGGTCGGGGGGAGGGTGTGCGC
131 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGGTC---GGG-GGGTGTGCGC
* * **
12264492 ATATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTC
192 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
12264557 GAGAATTCACACCCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAG
257 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
** *
12264622 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTA
322 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
** * * *
12264687 AATTGTTTTGTGCATGTGAACAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAGAAA-TC
387 AATT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTC
* * * *
12264751 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAATGATTCAAAAATCGTGAAAAATAGAAAA
450 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * * *
12264816 CGAGTCATCTTGCCAAGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCA
515 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
12264881 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATC
580 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
12264946 CACGACTTGCACATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCGTTTTGTC
645 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * ***
12265007 TGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGGCCGAGGGTTGCAATAG
710 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* * * * * * * * *
12265072 CAGGATCAGTAGCACACAGAGTGGGACCAGGCCCATCCTCGGCTTACGCATCCCGCCCCTCTGGC
775 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
* * **
12265137 CGACTGAGCACCCACACGCTCAATTCGTGGGTTGAC
840 CG-GTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
12265173 TTAGGTATACAGAGTTCATTGCCAGTCTACGCATACAGAGTTCATTCCAATCTAAGATCGGACTG
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-C-GAG---A-T-C-A-C--AGA-C---C--
** * * * **
12265238 GATCGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGTCGGTGCCGCATTTTTCTTCACCG
49 -A---AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCG
* * * *
12265303 GGGCACCATCGCCGAAGCATCGCCGAAGAACTTGACCGGTGGCATTGGGGTTCCGACGATC-GGG
110 GGGCACCATCGCCG-AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGG
* * * *
12265367 GGGTCGGGGGCTGTGCGCACATGATGTGCTACGGGTACTGGTACTTGGCCCTTATATTGGCCCCC
174 GGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
12265432 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGC
239 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
12265497 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTAC
304 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
12265562 ACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
369 ACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * **
12265627 GTTTGGGGCCAATACTCCATCCCAAAAAATTTTTAAAAAATC-CTGAACCGCAAAAAGTTTTGAA
433 GTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAA
*
12265691 AATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
496 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
12265756 TGTATCAATTTACAAGCCATAGAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
561 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
12265821 ACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTAGCCGGCGTA--G--CGCCCG
626 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
* * * * *
12265882 CCTGCCTGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACC
691 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * *
12265947 GAACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCAGCCGATCCCCGGCTTG
756 GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTG
* * * * * *
12266012 CACATCCAGCCCCTTTGGTCGGCTGAGCACACGCACGCTCGTTTTGTGGGTTGAC
821 CGCATCCTGCCCCTCTGGCCGG-TGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
*
12266067 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGATTTCATTCCCAGTCTAAGATCGGACC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-C-GA---GA-T--CA--C----A---GACC
* * * * * *
12266132 AAACCGAGGGTTTTGACAACACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATATTTCTTCGAC
49 --A---AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC
* * * * * * *
12266197 GGGGCACCATCGCCGGAGCATCACCGAAGAGCCTGGCCGGCGGCATTGAGGTTCTGACGATTC-G
109 GGGGCACCATCGCC-GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC-AATCGG
12266261 GGGGGTCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
172 GGGGGTCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
12266326 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT
236 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
12266391 TGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTG
301 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
12266456 TACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACATAAATACAAGGATCATGTCTAC
366 TACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * *
12266521 CAAGTTTGGAGCTAAAACTCCTTCCGAAAAAAATTTAAAAAATCTCGAACCGCAAACAGTTTCAA
430 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAA
* * * * *
12266586 AAATCTTAAAAAACAGAAAACGGGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCA
495 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
**
12266651 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
560 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * * *
12266716 CACCTACCACCATATTGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCTGCCC
625 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
* * * *
12266781 GCCTGCCTGCCCGCTCATTTCATCGGTTGGATTAGGCATATGGAGTTCATTCCCAGTCTAAGATC
690 G-C--CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** *
12266846 AGACCAGATTGAGGGTTGTGGCAGCAGGATCGGCAGCACGC-GAGGGGGACCCGGCCGATCCCCG
751 AGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCG
* * * *
12266910 GCTTACGCAT-CTCGCCCCTCTGGCCAGCTGAGCACCCGCACGTTCGTTTCATGGGTTGAC
816 GCTTGCGCATCCT-GCCCCTCTGGCC-GGTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
12266970 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTGATTCCCTGTCTAAGATCAGACC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-C-GA---GA-------TC----A-CAGACC
12267035 GGACGGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC
49 --A---AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC
* * *
12267100 GGGGCACCAT---C--G--T---CGGAGAACCTGACCGGCGACATTGGGTTTCCTG-CGATCGGG
109 GGGGCACCATCGCCGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GACAATCGGG
* * **
12267154 GGGGTCGGGGGGGTGTGTGCACATCATGTGCGATGGGTGCTGGTACTTCACCCTTATATTGG-CC
173 GGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
12267218 CCTATCCCTCATCAAACCCCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
237 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
12267283 GCTGCCAGTAGCGATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
302 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
12267348 ACACTTCGGGTTTTTAGCTGAATTTTTTTGAGCATGCTAAAAAAAATACAA-GATTCACATCTAC
367 ACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGA-TCACGTCTAC
* * **
12267412 CAAGTTTGGAGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGA
430 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAA
*
12267477 AAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
495 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * **
12267542 TAGTATCAATTTACAAGCCATAAAAATGTTATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
560 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
12267607 CACTTACCACACTATCGATCCACGGCTTGCTCATCCCGTCTCTCTGGCCGGCGTAGT----GCCC
625 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
* * *
12267668 GCCCACCCGCTTGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
690 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * **
12267733 CGGACCGAGGGTTACGGCA-AAGGGATCGGTAGTACGTAGAGGGGGACCCGGTTGATCCCCGGCT
755 CGGACCGAGGGTTGCGGCAGCA-GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCT
*
12267797 TGTGCATCCTGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
819 TGCGCATCCTGCCCCTCTGGCCGG-TGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
12267854 TTAGGGATACGAAGTTCATTACCAGTCTAAGCAAACGGAGTTGATTCCCAGTCTAAGATCAGACC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGC-ATC-GA---G------A-TC----A-CAGACC
* * * * * **
12267919 AGACTGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTAGTGCCACATTTTTCTTCACC
49 --A---AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC
* * * *
12267984 GGGGCACCATCGCCGGAGCGTCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGCGATCGGG
109 GGGGCACCATCGCC-GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGG
* *
12268049 GGGGTCGGGGGGGTGTGCACACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
173 GGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
12268114 CCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTAAAGGTTT
237 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
12268179 GCTGCCAGTAGCCATTAAAGTGTCTCATATGGGGACACTTTTTTCAAATGGTCACAAAATCATGT
302 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
12268244 ACTCTTCGAGTTTTTAGCTGAATTTCTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
367 ACACTTCGAGTTTTTAGCTGAATTT-TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * * * * *
12268309 AAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCTAACCACAAAAAGTTTTAAA
431 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAA
*
12268374 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCAT
496 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
12268439 TATATGAATTTAGAAGCCATAAAAATGGCATTGGCGTGTAGAAATATGAAGTTGTGCCTAAACCC
561 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* **
12268504 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCGCTCTGGCCGTTGTAGTGCCCGCCCG
626 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
* *
12268569 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGACTTCATTCCCAGTCTAAGATCAGACC
691 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * ** * * * * * * *
12268634 GGACCAAGGGTTGTGATAGCAGGATCGACGGCATGCAGAGGGGGACTCGACCAATCCCCGACTTG
756 GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTG
* * * *
12268699 CGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTAAC
821 CGCATCCTGCCCCTCTGGCCGG-TGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
12268754 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-C-GAG---------A-TC----A-CAGA-C
** * ** * * *
12268819 AGACATAGGGTTGCAGCAGCACATGTTGGGCTCAAGCATTTTTTGGTGCCGTATTTTTCTTCGTC
48 ---CA-AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC
* * *
12268884 GGGGCACCATCGCTCTAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACAATCGGG
109 GGGGCACCATCGC-CGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGG
* * * *
12268949 GGGGTCAGGGGGTGTGGGCACATGATGTGCGATGGGTGCTGGTACTTGG-GCTTGTATTGGCCCC
173 GGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
12269013 CTATCCCTCATCAAACATAGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
238 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
12269078 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTA
303 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
12269143 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
368 CACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * * * * *
12269208 AGTTTGGGTCCAGAAA-TCCTTTCAAAAAAATTATAAAAAATCCCGAACCACAAAAAGTTTCGAA
432 AGTTTGGGGCCA-AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAA
* *
12269272 AATCATGAAAAATAGAAAACGGGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCAT
496 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
12269337 TGTATCAATTTACAAGCCATAAAATTGGCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCC
561 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
12269402 ACCGACCACCTTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCTCG
626 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
* * *
12269463 CCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
691 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * *
12269528 GGACCGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAGTGGGACCAGGGCGATCCCTGGCTT-
756 GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTG
* * * * * **
12269592 CGCAT-CTCACCCCTCTGGCCGACTGAGTA-TCGACACGCTCGTTTCATGTTTTGAC
821 CGCATCCT-GCCCCTCTGGCCG-GTGAGCACCCG-CACGCTCGTTTCGTGGGTTGAC
*
12269647 TTAGGCATACGGAGTTCATTGCCAGTCTATGCATACAAAGTTCATTCCCAGTCTAAGATCGAATC
1 TTAGGCATACGGAGTTCATT-CC---C-A-G--T-CTAAG--CA-T--C-G----AGATC--A-C
* * * * *
12269712 AGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGTCGGTGCCACATTTTTCTTCCTC
44 AGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC
* * * *
12269777 GGGGCACCATCGCCAGAGCATCACCGGAGAACTTGACCGGCGGCATTGGGTTTCC-AGCGATCGG
109 GGGGCACCATCGCC-GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CAATCGG
* * * * *
12269841 GGGAGTCGAGGGGGTGTGCGCACATCATGTGCAATGGGTACTGGTACTTGTCCCTTATATTGGCC
172 GGGGGTCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
12269906 CCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCGTGAAGAGCATTTGAGATTTTACAGGTT
236 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * **
12269971 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACGTTTTAAAAATGG-CGACAAAATCTT
301 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC-ACAAAATCTT
* *
12270035 GTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTTTA
365 GTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* *
12270100 CCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGATTCA
429 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
* * * * * * * *
12270165 AAAATCGTGAAAAATAAAAAACGAGTCGTCTTACTATGAAGCTCCATGTGAAGGCTTGAGGGACC
494 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
12270230 ATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCA-CCTAGAAGTATGAAGATGTGCCTAAA
559 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAAATATGAAGATGTGCCTAAA
* * *
12270294 CCCACCTACCACCCTATCGATCCATGGCTTGCGCTTCTCGTCTCTCTGGCCGACGTAGTGCCCGC
623 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-C
* * * * *
12270359 TCGCCCACCCGCCCACTCGTTTCATCGGTTGGCATAGGAATACGGAGTTCATTCCCAGTCTAAGA
685 -CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * ** * * * *
12270424 TTGGACCGGACCAAGGGTTGCGGCAGCAGGATCAACAACACGTAGAGAGGGACCCGGCTGATCCC
749 TCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCC
* * * *
12270489 CGGCTTGCGCATCCTGCCCCTCCGACTGGCAGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
814 CGGCTTGCGCATCCTGCCCCTCTGGCCGG-TGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
* ** * * * * *
12270551 TTAGGCATACGGAGTTTATTCCTGGTCTAAG-ATCG-GAT--CGGACCGAGGGTTGCGGTAGCAT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGAGATCACAGACCAAGGGTTGTGGCAGCAC
* * * * * * * *
12270612 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGAACCATCACAGGAACATT
66 ATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-CGAGCATC
* * * * *
12270677 GCCGGAGAATCGGACCGGTGGCATTGGGGTTCCGGCAATCGGGGAAGG-CGGGGGGGTGTGCGCA
130 GCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGG-GGGTC-GGGGGGTGTGCGCA
* * *
12270741 CATGAGGTGCGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCG
193 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
12270806 AGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
258 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * * * *
12270871 GTCTAAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTTCACTTCAATTTTTTAGCTAA
323 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
12270936 ATTTCTTTATGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
388 ATTT-TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * *
12271001 TCCGAAAAAATTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAATTTATGAAAAATAGAAAACG
452 TCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
12271066 AGTCGTCTTGCCATGAAACTTCACGTGTAGGCTTGAGGGACCATTTTATGAATTTACAAGCCATA
517 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** *
12271131 AAAATGGCATTGGCACCCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCA
582 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
12271196 CAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
647 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * *
12271261 TTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCGAATCGAGGGTTGCAGCAGCA
712 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
** * ** * * **
12271326 GGATCAACAGCACGCGGAGGGGGACATGGTCGATCCCCGGCTTGCGCATCCTTCCCCTCTAACCG
777 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
** *
12271391 GTAGAGCACCCATACGCTCGTTTCGTTGGTTGAC
842 GT-GAGCACCCGCACGCTCGTTTCGTGGGTTGAC
12271425 TTAGGCATACGGAGTTCATTCCC-GATCTAAG-ATC-AGA-C-CAGACCAAGGGTTGTGGCAGCA
1 TTAGGCATACGGAGTTCATTCCCAG-TCTAAGCATCGAGATCACAGACCAAGGGTTGTGGCAGCA
* * * * *
12271485 CATGCTGGG-TCGGGCATGTGCTGGTGCATGCATTTTTCTTCGTTGGGGGTACCATCACCAGAGC
65 CATGCTGGGCTCGGGCATGTGTTGGTGC-CGCATTTTTCTTCG-TCGGGGCACCATCGCC-GAGC
* * * * **
12271549 ATTGCCGGAGAATCGGACCGGCGGCATTGGGGTTTCGACAATCAGGGAAGG-CGGGGGGTGTGCG
127 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACAATC-GGGGGGGTCGGGGGGTGTGCG
* *
12271613 CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCT
191 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
12271678 CGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
256 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
12271743 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAACT
321 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
12271808 AAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTC
386 GAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* *
12271873 CTTCCGAAAAAATTTTTAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAA
450 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * *
12271938 C-AGGTCGTCTTGCCTTGAAACTTCGCGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCC
515 CGA-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
12272002 ACAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
579 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * *
12272067 CCACGGCTTGCGCATACCATCTCTCTGGCCGGCGTGGTGGCCGGCTGCCCACCCGCCCGTTCATT
644 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-GCC--C-GCCCGCCCGCCCGCTCGTT
* * * * * ** *
12272132 TTGTCGGTTGGCTTAGGTATACGGATTTCATTCCCAGCCTAAGATTAGACCAAACCAAGGGTTGC
705 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * * * *
12272197 GGCAGCAGGATCGGCAGCACACAGAGAGGGACCCGACCGATCCTCGGCTTGTGCATTCTGCCCCT
770 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCT
* *
12272262 CTGGCCGGCTAAGCACCCGCACGCTTGTTTCGTGGGTTGAC
835 CTGGCCGG-TGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
* * *
12272303 TTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATC-A-AAC-CGGATCAAGGGTTGTGGCAGCA
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGAGATCACAGACCAAGGGTTGTGGCAGCA
12272363 GGATCGGTAG
Statistics
Matches: 6241, Mismatches: 762, Indels: 358
0.85 0.10 0.05
Matches are distributed among these distances:
862 26 0.00
863 2 0.00
864 1 0.00
865 1 0.00
866 1 0.00
869 1 0.00
872 1 0.00
873 20 0.00
874 697 0.11
875 68 0.01
876 4 0.00
877 6 0.00
878 772 0.12
879 7 0.00
881 1 0.00
882 1 0.00
883 84 0.01
884 191 0.03
885 3 0.00
886 1 0.00
887 66 0.01
888 1 0.00
889 1 0.00
890 4 0.00
891 408 0.07
892 91 0.01
893 424 0.07
894 553 0.09
895 606 0.10
896 615 0.10
897 279 0.04
898 457 0.07
899 48 0.01
900 329 0.05
901 6 0.00
902 6 0.00
903 296 0.05
904 147 0.02
905 5 0.00
906 4 0.00
907 1 0.00
909 1 0.00
910 4 0.00
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGAGATCACAGACCAAGGGTTGTGGCAGCAC
ATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAGCATCG
CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGGTCGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTGA
GCACCCGCACGCTCGTTTCGTGGGTTGAC
Found at i:12272396 original size:159 final size:158
Alignment explanation
Indices: 12272137--12272491 Score: 458
Period size: 159 Copynumber: 2.2 Consensus size: 158
12272127 TCATTTTGTC
* * * * * *
12272137 GGTTGGCTTAGGTATACGGATTTCATTCCCAGCCTAAGATTAGACCAAACCAAGGGTTGCGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACCAAGGGTTGCGGCAG
* * * * * *
12272202 CAGGATCGGCAGCACACAGAGAGGGACCCGACCGATCCTCGGCTTGTGCATTCTGCCCCTCTGGC
66 CAGGATCGGCAGCACACAGAGAGGGACCCGACCGATCCCCGACCTGCGCATCCCG-CCCTCTGGC
*
12272267 CGGCTAAGCACCCGCACGCTTGTTTCGTG
130 CGGCTAAGCACCCGCACGCTCGTTTCGTG
** * *
12272296 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCAAGGGTTGTGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACCAAGGGTTGCGGCAG
* * * *
12272361 CAGGATCGGTAGCACACAGAGAGGGACCTGGCCGATCCCCGACCTGCGCATCCCGCCCTTTGGCC
66 CAGGATCGGCAGCACACAGAGAGGGACCCGACCGATCCCCGACCTGCGCATCCCGCCCTCTGGCC
* * *
12272426 GGCTGAGCGCCCGCACGGTCGTTTCGTG
131 GGCTAAGCACCCGCACGCTCGTTTCGTG
* * *
12272454 GGTTGAGTTAAGCATACAGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
12272492 CATACGGAGT
Statistics
Matches: 169, Mismatches: 27, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
158 68 0.40
159 101 0.60
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (158 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACCAAGGGTTGCGGCAG
CAGGATCGGCAGCACACAGAGAGGGACCCGACCGATCCCCGACCTGCGCATCCCGCCCTCTGGCC
GGCTAAGCACCCGCACGCTCGTTTCGTG
Found at i:12272501 original size:26 final size:26
Alignment explanation
Indices: 12272462--12272514 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12272452 TGGGTTGAGT
12272462 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
12272488 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
12272514 T
1 T
12272515 CAAATCGGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:12274655 original size:900 final size:902
Alignment explanation
Indices: 12273364--12276965 Score: 4459
Period size: 900 Copynumber: 4.0 Consensus size: 902
12273354 GTTGACTTAG
* * * * *
12273364 GCATAC-GAAGTTCATTCCCAGTCTAAGGTCGGATCAGACCGAGGGTTGCGGCAGCAGATGCTGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGACAGCACATGCTGG
* * * * *
12273428 GCTCGGGCATGTGCTGGT-CCACATTTTTCTTCACCGTGGCACCATCGCCGGAGTATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGCCGGAG
* * *
12273492 AACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCCCATGATGT
130 AACCTGACCGGCGGCATTTGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGT
*
12273557 GAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12273622 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCGGAAA
* * * *
12273687 TGGGGACACTTTTTCCAAATGGTCACAAAATGTTGTAGACTTCAAATTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * *
12273752 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-TAAAAACTGCTTTCAAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTCCTTCCAAAA
* * *
12273816 ATATTTTAAAAAATCTTGAACCGTAAAAAGTTTCGAAAATAGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCGAAAATAGTGAAAAATAAAAAACGAGTCGTC
*
12273881 TTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12273946 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA-CTACCACCTTATCGATTCACGGCTTG
583 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
12274010 CGCATCCCGTCTCTCTCGCTGGA-GTAGTGCCCGCCCGCCCACCTGCCCGCTCGTTTCGTCGATT
648 CGCATCCCGTCTCTCTCGC-CGACGTAGT-CCCGCCCGCCCACCTGCCCGCTCGTTTCGTCGGTT
* *
12274074 AGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGGTTACGATAGCAGG
711 AGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGGTTGCGACAGCAGG
* * * * *
12274139 ATCGGCAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAGC
776 ATCGGCAACACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
12274204 TGAGCATCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
841 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12274266 GCATACAGAGTTCATTCCCAATCTAAGATCGCACCAGACCGAGGGCTT-CAACAGCA-ATGCTAG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGG-TTGCGACAGCACATGCTGG
*
12274329 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGCCGGAG
* *
12274394 AACCTGACCGGCGGCATTTGGGTTCCGACAATCGGGGGGGCGGGCGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTTGGGTTCCGACGATCGGGGGGCCGGG-GGGTGTGCGCACATGATGTG
* *
12274459 TGATGGGTGCTGGTAATTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12274523 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCGGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCGGAAAT
* * * * *
12274588 AGGCACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTAAGTTTTTAGCTCAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
* *
12274653 TGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGG-CTAAAACTCCTTCCAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTCCTTCCAAAAA
*** *
12274717 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTC-AGAAATCGTGAAAAATAAAAAACGAGTCGTC
454 AATTTTAAAAAATCTTGAACCGCAAAAAGTTTCGA-AAATAGTGAAAAATAAAAAACGAGTCGTC
* * *
12274781 TTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAGTGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12274846 CATTTGCACGTAGAAATATGAATATGTGCCTAAACCCACCTACCACCC-ATCGATCCATGGCTTG
583 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
12274910 CGCATCCCGCCTCTCTGGCCGACGTAGT---GCCCG--C-CC-GCCCGCTCGTTTCTTCGGTTGG
648 CGCATCCCGTCTCTCTCGCCGACGTAGTCCCGCCCGCCCACCTGCCCGCTCGTTTCGTCGGTTAG
* * * * * *
12274968 CTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATTGGACCGGGCTGAAGGTTGC-AGCAGCAGGA
713 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGGTTGCGA-CAGCAGGA
* * *
12275032 TAGGCAACACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGTT
777 TCGGCAACACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
12275097 GAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12275158 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCGAACCGGACCGAGGGTTGCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAG-AT-C---G------C--ACCAGACCGAGGGTTGCGAC
* * ** * *
12275223 AGCACATGCTTGGCTCGGGCATGCGCTGGTGCCGTATTTTTCTTC-GCTTGGGCACCATCGCCAG
53 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATC-GGGGCACCATCGCCAG
* * * * * * *
12275287 AGCATCGCCGGAGAACCTAACCGGCAGCGTTAGGGTTTCGACGATAGGGGGGCCGGGGGGGTGTA
117 AGCATCGCCGGAGAACCTGACCGGCGGCATTTGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTG
* * *
12275352 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATCGGCCCCCTATCCCTCATCAAAC
181 CGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
12275417 CTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATT-
246 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
12275481 AA-----GG---T---G-C-C------C-----G-----AAATCTTGTACAC-TCTGAGTTTTTT
311 AAGTGTCGGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AAGTTTTTA
* *
12275516 GCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAA
375 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
12275580 ACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATAGTGAAAAA-AA
440 ACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCGAAAATAGTGAAAAATAA
* *
12275644 GAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTATATGAATTTACA
505 -AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
12275709 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA-CTACCACCCTAT
569 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
12275773 CAATTCACGGCTTGCGCATCTCGTCTCTAGTCGGCGTA-GTACCCGCCCTCCACCCCCCGCCCAC
634 CGATCCACGGCTTGCGCATCCCGTCTCT-CTCGCCG-ACGTA---G---T-C-CCGCCCGCCCA-
* * *
12275837 CCACCGCCCACCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAA
688 -C-CTG------C-CCGCTCGTTTCGTCGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * **
12275902 GATGGGACTAGATTGAGGGTTGCTACAGCAGGATCAGCAGCACACAGAGAGGGACCCGATCGATC
744 GATGGGACCAGACTGAGGGTTGCGACAGCAGGATCGGCAACACACAGAGGGGGACCCGGCCGATC
* * * * * * *
12275967 CCCGACTTGCGCATCCCGCCCCTCTAGCTGGCTGAGCGCCCGCACGCTCGTTTTGTGGCTTAACT
809 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACT
*
12276032 TAGGCATACGGAGTTCATTCCTAGTCTAA
874 TAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12276061 GCATGCAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * ** ** * **
12276126 CTCGAGCATGTGCAGGTGCCACATTTTTCTTCATCGGGGTGCCATCATCGGAGC-TACGCTAGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCAT-CGCCGGAG
* * * *
12276190 ATCCTGACCGACGGCA-TTGATGTTCCGACGATCGAGGGGGCCAAGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTTG-GGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATG
*
12276254 TGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
192 TGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * **
12276319 AGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCACTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCGGAA
* *
12276384 ATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTA-CGTGAATTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGC-TGAATTTTT
* * * * **
12276448 TTGTGCAAGCC-AACAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAAA-TCCATCTGA
386 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTCCTTCCAA
* * * * *
12276511 AAAAATTTAAAAAAATCTTGAACCTCAAAAAGTTTTGAAAATAATGAAAAATAAAAAACGAGTCA
451 AAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCGAAAATAGTGAAAAATAAAAAACGAGTCG
*
12276576 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
12276641 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * *
12276706 TGCGCATCCCATCTCTCTGGTCGACGTAGTTCCCGCCTGCCCGCCTGCCCGTATCTTTTTGTCGG
646 TGCGCATCCCGTCTCTCTCGCCGACGTAG-TCCCGCCCGCCCACCTGCCCG-CTCGTTTCGTCGG
* * ** * *
12276771 TTCA-CTTAGGCTTAC-GAGGTTCACTCCCAGTCTAAGATCAGACTAGA-TCGAGGGTTGCGGCA
709 TT-AGCTTAGGCATACAGA-GTTCATTCCCAGTCTAAGATGGGACCAGACT-GAGGGTTGCGACA
* * * * *
12276833 GCAGGATCGGTAACACACAAAGGGGGACCTGGCCGATCTCAGGCTTGCGCATCCCGCCCCTCTGG
771 GCAGGATCGGCAACACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * *
12276898 CCGACTGAGCACCCGCTCGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCTCAGTCT
836 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
12276963 AA
901 AA
12276965 G
1 G
12276966 ATCAAACCGG
Statistics
Matches: 2327, Mismatches: 270, Indels: 204
0.83 0.10 0.07
Matches are distributed among these distances:
876 12 0.01
877 265 0.11
878 9 0.00
879 1 0.00
881 1 0.00
882 1 0.00
884 1 0.00
887 1 0.00
889 7 0.00
890 99 0.04
891 138 0.06
892 213 0.09
893 5 0.00
894 4 0.00
895 1 0.00
896 6 0.00
897 2 0.00
898 2 0.00
899 3 0.00
900 398 0.17
901 92 0.04
902 118 0.05
903 218 0.09
904 172 0.07
905 21 0.01
906 146 0.06
907 84 0.04
910 2 0.00
911 2 0.00
913 8 0.00
914 1 0.00
915 1 0.00
917 1 0.00
919 1 0.00
920 208 0.09
921 81 0.03
922 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTTGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGAG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCGGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCTTGAACCGCAAAAAGTTTCGAAAATAGTGAAAAATAAAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTCGCCGACGTAGTCCCGCCCGCCCACCTGCCCGCTCGTTTCGTCGGTTAGCTT
AGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGGTTGCGACAGCAGGATCGG
CAACACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12275168 original size:26 final size:26
Alignment explanation
Indices: 12275132--12275200 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
12275122 GTTGACTTAG
12275132 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12275158 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12275184 GCATACAGAGTTCATTC
1 GCATACGGAGTTCATTC
12275201 GAACCGGACC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12275787 original size:877 final size:875
Alignment explanation
Indices: 12272277--12276965 Score: 4369
Period size: 900 Copynumber: 5.2 Consensus size: 875
12272267 CGGCTAAGCA
* * * * * **
12272277 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC
1 CCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACC
* ** * * * * * * *
12272342 -GGATCAAGGGTTGTGGCAGCAGGATCGGTAGCACACAGAGAGGGACCTGGCCGATCCCCGACCT
65 AGGAT-GAGGGTTGCAGCAGCAGGATAGGCAACACACAGAGGGGGACCCGGCCGATCCCCGGCTT
* * * *
12272406 GCGCATCCCG-CCCTTTGGCCGGCTGAGCGCCCGCACGGTCGTTTCGTGGGTTGAGTTAAGCATA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
12272470 CAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTCAA-ATCGGACCGGATCGAG
194 CGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT-AAGATCGGACCGGACCGAG
* * * * * * * * *
12272534 GGTTGCGACAGCACATACTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACA
258 GGTTACGACAGCACATGCTGGGCTCGAGCATGCGCAGGTGCCACATTTTTCTTCATCGGGGCACC
* * * * * * * * *
12272599 ATCGCCGGAGC-ATCGCCGGAGAACCTGACCGGCAGTATTGGGGTTTCGACGATCG-GGGGTGCC
323 ATCACCAGAGCTA-CGCCAGAGAACCTAACCGACAGCATTGAGGTTCCGACGATAGAGGGG-GCC
** * * * *
12272662 GGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
386 AAGGGG-GTGTACGCACATGATGTGAGATGGGTGCTGGTACTTGGCCATTATATCGGCCCCCTAT
* * * *
12272727 CCCTCATCAAAACATCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG
450 CCCTCATC-AAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
* *
12272792 CCAGTAGCCATTAAAGTGTTAGAAATGGGGACACTTTATTCAAATGGTCGCAAAATCTTGTGCAC
514 CCAGTAGCCA--CAA--GTT--AAATGGGGACAC-----TC--A-----G-AAAATCTTGTACAC
** * * *
12272857 TTTGAGTTTTAAGCTGAGTTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGT
560 -TTGAGTTTTTTGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGT
* * ** *
12272921 TTGGGGCCAAAACTCCTACCGAAAAAAATTTT-AAAAATCTCGAACTACAAAAACTTTCT-AAAA
624 TTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTT-TGAAAA
* * *
12272984 TCA-TGAAAAAT-AAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGG-CCAA
687 T-AGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCAT
* *
12273046 TGTATGAATTTACAAGCC--AAAAATGGCATTGGCAATGCAGAAATATGAAGATGTGCCTAAACC
750 TGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ACGTAGAAATATGAAGATGTGCCTAAACC
* * *
12273109 CACCTACCA-CCTATCGATCCACAGCTTGCGCATCCCGTCTCTTTGG-CGGCGTAGTGCCCGCCG
814 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT--CC-CCG
* *
12273172 CTCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
1 --C-CC-GCCCGCTCGTTTCTTCGGTTGGCTTAGGCATACG-AGTTCATTCCCAGTCTAAGATCG
* ** * * * * ** * *
12273237 AACCA-GACTGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGAGGGGGACCC-GACGATCCTCG
61 GACCAGGA-TGAGGGTTGCAGCAGCAGGATAGGCAACACACAGAGGGGGACCCGGCCGATCCCCG
* *
12273300 GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGG
125 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
12273365 CATACGAAGTTCATTCCCAG--T---C-TA-AG-G-----T--C-G-----GATC--A---GACC
190 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * * * * *
12273404 GAGGGTTGCGGCAGCAGATGCTGGGCTCGGGCATGTGCTGGT-CCACATTTTTCTTCACCGTGGC
255 GAGGGTTACGACAGCACATGCTGGGCTCGAGCATGCGCAGGTGCCACATTTTTCTTCATCGGGGC
* * * * * * * * * * *
12273468 ACCATCGCCGGAG-TATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGG
320 ACCATCACCAGAGCTA-CGCCAGAGAACCTAACCGACAGCATTGAGGTTCCGACGATAGAGGGGG
* * * * *
12273532 CCGAGGGGGTGTGCGCCCATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
384 CCAAGGGGGTGTACGCACATGATGTGAGATGGGTGCTGGTACTTGGCCATTATATCGGCCCCCTA
*
12273597 TCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
449 TCCCTCATCAAACCT-AGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * * *
12273661 GCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATGTTGTAGA
513 ACCAGTAGCCA--CAA--GT-T-AAATGGGGACAC----T-C--A--G----AAAATCTTGTACA
* * * * *
12273726 CTTCAAATTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
559 CTT-GAGTTTTTTGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAG
** * * * * *
12273791 TTTGGGGTAAAAACTGCTTTCAAAAATATTTTAAAAAATCTTGAACCGTAAAAAGTTTCGAAAAT
623 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAAT
* *
12273856 AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGT
688 AGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
12273921 ATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA-C
753 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
12273985 TACCACCTTATCGATTCACGGCTTGCGCATCCCGTCTCTCTCGCTGGA-GTAGTGCCCGCCCG
818 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGACGTAGT---C-CCCG
* * * *
12274047 CCCACCTGCCCGCTCGTTTCGTCGATTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGG
1 --C-CC-GCCCGCTCGTTTCTTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCG
* * * * * *
12274112 GACCA-GACTGAGGGTTAC-GATAGCAGGATCGGCAGCACATAGAGGGGGACCCGGTCGATCCCC
61 GACCAGGA-TGAGGGTTGCAG-CAGCAGGATAGGCAACACACAGAGGGGGACCCGGCCGATCCCC
* * ** *
12274175 GGCTTACGCATCCCGCCCCTCTGGCCAGCTGAGCATCCACACGCTCGTTTCGTGGGTTGACTTAG
124 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
12274240 GCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGCACCAGAC
189 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * *
12274305 CGAGGGCTT-CAACAGCA-ATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
254 CGAGGG-TTACGACAGCACATGCTGGGCTCGAGCATGCGCAGGTGCCACATTTTTCTTCATCGGG
* * * * * * *
12274368 GCACCATCGCCAGAGC-ATCGCCGGAGAACCTGACCGGCGGCATTTG-GGTTCCGACAATCG-GG
318 GCACCATCACCAGAGCTA-CGCCAGAGAACCTAACCGACAGCA-TTGAGGTTCCGACGATAGAGG
* * * * * * *
12274430 GGGGC-GGGCGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAATTGGCCCTTATATTGG-CC
381 GGGCCAAGG-GGGTGTACGCACATGATGTGAGATGGGTGCTGGTACTTGGCCATTATATCGGCCC
* *
12274493 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
445 CCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
12274558 GCTGCCAGTAGCCATTAAAGTGTCGGAAATAGGCACACTTTTTTCAAATGGTCACAAAATCTTGT
510 GCTACCAGTAGCCA--CAAGT-T---AAATGGGGACAC-----TC--A--G----AAAATCTTGT
* * * * * * *
12274623 AAACTTTAAGTTTTTAGCTCAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACC
556 ACAC-TTGAGTTTTTTGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACC
* *** *
12274688 AAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG-TTTCAG
620 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGA-
* *
12274752 AAATCGTGAAAAATAAAAAACGAGTCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
684 AAATAGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
12274817 TTGTATGAATTTCCAAGCCATAAAAGTGGCATTTGCACGTAGAAATATGAATATGTGCCTAAACC
749 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
* * *
12274882 CACCTACCACCC-ATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG
814 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCCCCG
* *
12274943 CCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATTGGACC
1 CCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACC
* * *
12275008 GGGCTGAAGGTTGCAGCAGCAGGATAGGCAACACACAGAGGGGGACCCGGCCGATCCCCGGCTTG
65 AGGATGAGGGTTGCAGCAGCAGGATAGGCAACACACAGAGGGGGACCCGGCCGATCCCCGGCTTG
* * *
12275073 CGTATCCCGCCCCTCTGGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
130 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
12275138 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCGA
195 GGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG-AT-C---G-------G-
* * * * **
12275203 ACCGGACCGAGGGTTGCGACAGCACATGCTTGGCTCGGGCATGCGCTGGTGCCGTATTTTTCTTC
247 ACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGCGCAGGTGCCACATTTTTCTTC
* * * * * * *
12275268 -GCTTGGGCACCATCGCCAGAGC-ATCGCCGGAGAACCTAACCGGCAGCGTT-AGGGTTTCGACG
312 ATC-GGGGCACCATCACCAGAGCTA-CGCCAGAGAACCTAACCGACAGCATTGA-GGTTCCGACG
** *
12275330 ATAG-GGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATAT
374 ATAGAGGGGGCCAAGGGGGTGTACGCACATGATGTGAGATGGGTGCTGGTACTTGGCCATTATAT
*
12275394 CGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
439 CGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
12275459 AGGTTTGCTACCAGTAG-C-C-A-TT-AA-GGTG-C-C-C-G-AAATCTTGTACACTCTGAGTTT
504 AGGTTTGCTACCAGTAGCCACAAGTTAAATGGGGACACTCAGAAAATCTTGTACACT-TGAGTTT
12275513 TTTGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
568 TTTGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
12275578 AAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATAGTGAAAAA-
633 AAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATAGTGAAAAAT
* *
12275642 AAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTATATGAATTTA
698 AA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
12275707 CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA-CTACCACCCT
762 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
12275771 ATCAATTCACGGCTTGCGCATCTCGTCTCTAGTCGGCGTAGTACCCGCCCTCCACCCCCCGCCCA
827 ATCGATCCACGGCTTGCGCATCCCGTCTCT-CT-GGC--CG-A--CG---T--A------G----
*
12275836 CCCACCG
870 TCC-CCG
* * * *
12275843 CCCACCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATGGG
1 -CC-CGC-CCGCTCGTTTCTTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCGG
* * * **
12275908 ACTA-GATTGAGGGTTGCTA-CAGCAGGATCA-GCAGCACACAGAGAGGGACCCGATCGATCCCC
62 ACCAGGA-TGAGGGTTGC-AGCAGCAGGAT-AGGCAACACACAGAGGGGGACCCGGCCGATCCCC
* * * * * *
12275970 GACTTGCGCATCCCGCCCCTCTAGCTGGCTGAGCGCCCGCACGCTCGTTTTGTGGCTTAACTTAG
124 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
12276035 GCATACGGAGTTCATTCCTAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
189 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
*
12276100 CGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCAGGTGCCACATTTTTCTTCATCGGGG
254 CGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGCGCAGGTGCCACATTTTTCTTCATCGGGG
** * * * * * * * *
12276165 TGCCATCATCGGAGCTACGCTAGAGATCCTGACCGACGGCATTGATGTTCCGACGATCGAGGGGG
319 CACCATCACCAGAGCTACGCCAGAGAACCTAACCGACAGCATTGAGGTTCCGACGATAGAGGGGG
* * *
12276230 CCAAGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
384 CCAAGGGGGTGTACGCACATGATGTGAGATGGGTGCTGGTACTTGGCCATTATATCGGCCCCCTA
* * *
12276295 TCCCTCATCAAACCTTGAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
449 TCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
*
12276360 TCAGTAGCCACTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACAC
514 CCAGTAGCCAC--AA--G-TT-AAATGGGGACAC-----TC--A-G-----AAAATCTTGTACAC
* *
12276425 TTCGAG-TTTTTACGTGAATTTTTTTGTGCA-AGCCAAC-AAAATACAAGGATCACGCCTACCAA
560 TT-GAGTTTTTTGC-TGAATTTTTTTGTGCATA-CCAACAAAAATACAAGGATCACGTCTACCAA
* * ** * *
12276487 GTTTGGGGCCAAAAATCCATCTGAAAAAATTTAAAAAAATCTTGAACCTCAAAAAGTTTTGAAAA
622 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAA
* *
12276552 TAATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
687 TAGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
12276617 TATGAATTTACAAGCCATGAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
752 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* *
12276682 CTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGACGTAGTTCCCGCCTG
817 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG-T-CC-CC-G
* * * ** * *
12276745 CCCGCCTGCCCGTATCTTTTTGTCGGTTCACTTAGGCTTACGAGGTTCACTCCCAGTCTAAGATC
1 CCCGCCCGCTCG----TTTCT-TCGGTTGGCTTAGGCATACGA-GTTCATTCCCAGTCTAAGATC
* * * * * * * * *
12276810 AGACTA-GATCGAGGGTTGCGGCAGCAGGATCGGTAACACACAAAGGGGGACCTGGCCGATCTCA
60 GGACCAGGAT-GAGGGTTGCAGCAGCAGGATAGGCAACACACAGAGGGGGACCCGGCCGATCCCC
* * * * *
12276874 GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCTCGCTCATTTCATGGGTTGACTTAG
124 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
12276939 GCATACGAAGTTCATTCTCAGTCTAAG
189 GCATACGGAGTTCATTCCCAGTCTAAG
12276966 ATCAAACCGG
Statistics
Matches: 3246, Mismatches: 370, Indels: 345
0.82 0.09 0.09
Matches are distributed among these distances:
867 2 0.00
869 6 0.00
870 127 0.04
871 152 0.05
872 145 0.04
873 105 0.03
874 21 0.01
875 107 0.03
876 100 0.03
877 264 0.08
878 9 0.00
879 3 0.00
881 2 0.00
882 4 0.00
883 3 0.00
884 4 0.00
886 1 0.00
887 2 0.00
889 2 0.00
890 101 0.03
891 137 0.04
892 211 0.07
893 10 0.00
894 4 0.00
895 2 0.00
896 7 0.00
897 7 0.00
898 28 0.01
899 167 0.05
900 389 0.12
901 104 0.03
902 92 0.03
903 221 0.07
904 165 0.05
905 23 0.01
906 142 0.04
907 79 0.02
909 1 0.00
911 2 0.00
914 2 0.00
915 1 0.00
916 1 0.00
917 1 0.00
919 2 0.00
920 212 0.07
921 76 0.02
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (875 bp):
CCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCATACGAGTTCATTCCCAGTCTAAGATCGGACCA
GGATGAGGGTTGCAGCAGCAGGATAGGCAACACACAGAGGGGGACCCGGCCGATCCCCGGCTTGC
GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
TACGACAGCACATGCTGGGCTCGAGCATGCGCAGGTGCCACATTTTTCTTCATCGGGGCACCATC
ACCAGAGCTACGCCAGAGAACCTAACCGACAGCATTGAGGTTCCGACGATAGAGGGGGCCAAGGG
GGTGTACGCACATGATGTGAGATGGGTGCTGGTACTTGGCCATTATATCGGCCCCCTATCCCTCA
TCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG
CCACAAGTTAAATGGGGACACTCAGAAAATCTTGTACACTTGAGTTTTTTGCTGAATTTTTTTGT
GCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATAGTGAAAAATAAAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTCCCCG
Found at i:12277989 original size:26 final size:26
Alignment explanation
Indices: 12277960--12278012 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12277950 CTGGTCGGAT
*
12277960 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
12277986 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12278012 C
1 C
12278013 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:12279632 original size:26 final size:26
Alignment explanation
Indices: 12279582--12279633 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12279572 CCGGTCCGAT
*
12279582 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
12279608 CTTAGACTGGGAATGAA-ATCAGTATG
1 CTTAGACTGGGAATGAACATC-GTATG
12279634 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCGTATG
Found at i:12280514 original size:26 final size:26
Alignment explanation
Indices: 12280485--12280537 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12280475 CTGGTCCGAT
*
12280485 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12280511 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12280537 C
1 C
12280538 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12283138 original size:26 final size:26
Alignment explanation
Indices: 12283109--12283161 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12283099 CCAGTCCGAT
* *
12283109 CTTATACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12283135 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12283161 C
1 C
12283162 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12285203 original size:893 final size:894
Alignment explanation
Indices: 12282255--12289169 Score: 8173
Period size: 894 Copynumber: 7.7 Consensus size: 894
12282245 TCTTTGGCTG
* * *
12282255 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCGTTCAGCCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * * *
12282320 GTGCGGGATGTGTAAGCCAGGGATCG-GCTGGGTCCCCCTCTGCGTGCTACCGGTCCTGCTACCA
66 GGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* * ** *
12282384 CAACCCTCGATCCT-ATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
130 CAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
12282448 AACGAGCGGGCGGGCGGGCGGAGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCTGTGGATC
194 AACGA----GCGGGCGGGCGG-GCACTACGCCGGCCAGAGAGACGGGACGTGCAAGCCGTGGATC
* **
12282513 GATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATATC
254 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
*
12282578 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
319 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
* * * * *
12282643 TTATTTTTCACAATTTTTAAAACCTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
384 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGT
* * * * *
12282708 TTTGGCCCCAAACTTAGCAGACTTGATCCTTTTATTTTTGTTGGCATGCACAAATAAATTCAGCT
448 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
12282773 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
513 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
12282838 ATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGA
578 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
12282903 TTGATAAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCA
643 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* *
12282968 CACCCCCC-GGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGGCGA-----
708 CACCCCCCAGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
* ** * * *
12283027 T-G-G-T-G-CCCT-GGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGC
772 TGGTGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* ** * * *
12283086 CACAACCCTCGGTCCAGTCCGATCTTATACTTGGAATGAACTCCGTATGCTTAGACTG
837 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* * * *
12283144 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * * ** * ** **
12283209 GAGCAGGATGCGCAAGCTGGGGAACGGTTGGGTGCCCCTCTATGTGATATCGATCCTGCTGCTGC
66 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
* * * * ** * *
12283274 AACCCTCGGTCTGGTCTGATCTTAGCCTAGGAATCAACTTCGTACACCTAAGTCAACCGATGAAA
131 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
12283339 CGAGCGGGTGGGCGGGCGGGCACTACGCTGGCCAGAAAGACGTGATGCGCAAGCCGTGGATCGAT
196 CGAGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGACGTGCAAGCCGTGGATCGAT
* *
12283404 ATGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
257 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
12283469 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACAACTCATTTTCTA
322 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
** * ** *
12283534 CATTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAAAAGGTGTTTT
387 TTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* *
12283599 GGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
451 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
12283664 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTGAGACACTTTAATG
516 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
12283729 GCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTTTTTAA-AGGGTGTGAGTTCTCGAGGTTTG
581 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* ** * * *
12283793 ATGAGTGATAGGGGTTCAATATAAGGGCCAAGCAACAGCACCCATCACACATCATGTGCGCACAC
646 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
*
12283858 TCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTG
711 -CCCCCAGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTG
* * * *
12283922 GTAATGGTGCCTCGACGTAGAAAAATGCGACACCAGCACATGCCCGAGCCCAACATGTGCTACCG
774 GTGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
* *
12283987 CAACCCTTGGACTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TCA
839 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-A
* * * * * *
12284043 GGAATGAACTCCGTATGCCTAAGTCAACACATGAAATGAGCGGGTGGGCGCTCAGCCGGCCAGAT
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* ** * * * * * * * *
12284108 GGGCGGGATACGCAAGCTAGGGATCGGTCGGGTCTCCCTCTGTGTTCTGTCGATCCTACTACCCC
66 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
* *
12284173 AACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAA
131 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
12284238 CGAGCGGACAGGCGGGAACTACGCCGG-CAGAGAGACGGGACGTGCAAGCCGTGGATCGATAGGG
196 CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGACGTGCAAGCCGTGGATCGATAGGG
**
12284302 TGGTAGGCCGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
261 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * **
12284367 TTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACAACTCATTTTCTACATT
326 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
* ** *
12284432 TCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAAAAGGCGTTTTGGCC
391 TCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
12284497 CCAATCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
455 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
12284562 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTGAGACACTTTAATGGCTA
520 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
12284627 CTGGTAGCAAACTTGTAAAATCTCAAATGCTTTTTAA-AGGGTGTGAGTTCTCGAGGTTTGATGA
585 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * * *
12284691 GTGATAGGGGGCCAATATAAGGGCCAAGCAACAGCACCCATTGCACATCATGTGCGCACACTCCC
650 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
12284756 CAGCCCCCCCGATCGCCGGAACCCCAATGCAGTCGGTCAGGTTCTCCGGCGATGCTCTGGTGATG
715 CAGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGTGATG
* * *
12284821 GTGCCTCGACGTAGAAAAATGCGACACCAGCACATGCCCGAGCCCAACATGTGCTACCGCAACCC
780 GTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
* *
12284886 TTGGACTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TCA
845 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-A
* * * * * * *
12284936 GGAATGAACTCCGTATGCTTAAGTCAACACATGAAATGAGCGCGTGGGCGCTCAGCCGGCCAGAT
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * * * *
12285001 GGGCGGGATACGCAAGCCAGGGATCGACCGGGTCTCCCTCTGCGTTCTGTCGATCCTACTACCCC
66 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
* *
12285066 AACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAA
131 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
12285131 CGAGCGGACAGGCGGGCACTACGCCGG-CAGAGAGACGGGACGTGCAAGCCGTGGATCGATAGGG
196 CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGACGTGCAAGCCGTGGATCGATAGGG
**
12285195 TGGTAGGCCGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
261 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
12285260 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTCGTTTTCTA-TT
326 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-TCATTTTCTATTT
* * * ** * * * ** *
12285324 TTAACAATTTTCGAAAAC-TTTCGCAGTTCGAATTTTTTTACAATTTTTTTTGAAGGATTTTTGG
390 TTCACGATTTTTG-AAACTTTTTACGGTTCGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
*
12285388 CCCCAAACTTGG-AGACGTGATCCTTGAAATTATATTGTTGGCATGCAC-AAAAAATTCATGCTA
453 CCCCAAACTTGGTAGACGTGATCCTTG-TATT-T-TTGTTGGCATGCACAAAAAAATTCA-GCTA
12285451 AAAACTCGGAAGTGTACAAGATTTTGTGACCATATTGAAAAAGAGTGTCCCCATCTTCAGACACT
514 AAAACTC-GAAGTGTACAAGATTTTGTGACCAT-TTGAAAAA-AGTGTCCCCAT-TTCAGACACT
* *
12285516 TTAATGGCTTACTAGGCAACAACCCTGTAAAAATCTC-AATGCTCTTTAAGGGGGTGTGAGTTCT
575 TTAATGGC-TACT-GGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
12285580 TGAGGTTTGATGAGGGATAGGAGGCCAATATAACGGCCAAGTACTAGCACCCATCGCACATCATG
637 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * ** * *
12285645 CGCGCACA-CCCCCTGGCCCCCCGATCCCCGGAACCACAATGCCGTCGGTCAGGTTCTCTGGCGA
702 TGCGCACACCCCCCAGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
* ** ** * ** * * *
12285709 TACTCCAGTGATGGCACCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCAAGT
767 TGCTCTGGTGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
12285774 GCTACCACAA-CC-C--TC--G---G----T---CT--G-AT--A-T--G-AT-CTTAGACTA
832 GCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* * * * *
12285811 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGTGCGCTCAGCCGGCTAAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* *
12285876 GGGTGGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
66 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
* *
12285941 AACCCTCAGT-TCGGTC-GAATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
131 AACCCTCGGTCT-GGTCTG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* ** * *
12286004 AACAAGCGGGCGGGCAGGCGGGCAGGCACTACGCCGGTTAGAGATACGAGATACGT--AAGCCGT
194 AACGAGCGGGC--G--GGC--G--GGCACTACGCCGGCCAGAGAGACG-G-GACGTGCAAGCCGT
* * *
12286067 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATACGTGCCAATGCCATTTTT
249 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
12286132 ATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACATGAAG-TTCATGGCAAGACGACTC
314 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** * *
12286196 ATTTTCTATTTTTCATAATTTTTGAAACTTTTCATGGTTCGAGATTTTTTAAAATTTTTTCGGAA
379 ATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAA
* ** *
12286261 GGAGTTTTTGCAACAAACTTGGTAGACGTGATCCTTGTATTATTGTTGGCATGCAC-----AA--
443 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
12286319 -A---AAAAACTCGAATTTTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCGATTTTAGACA
508 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
12286379 CTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
573 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
12286444 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
638 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
12286509 GCGTACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAA-GCCGTCGGTCAGGTTCTCCGACGAT
703 GCGCACACCCCCCAGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
* ** * * *
12286573 GCTCCGACGATGGTGCCCTTGTA--AAGAAAAA-GACGGCCCCAGCATATGCCCGAGCCCAGCAT
768 GCTCTGGTGATGGTG-CCTCG-ACGAAGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
12286635 GTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTA
830 GTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* ** * *
12286700 AGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGACCACTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * ****
12286765 GGCCAGGATGCGCAAGCCGAGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCCTACTGTTGT
66 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
* * * ** *
12286830 AACCCTCAGTCCGGTCTAATCTTAGACTGGGAACCAACTCTGTATGCCTAAGCCAACCGACGAAA
131 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
12286895 CGAACGGGCGGGCGGTCGGGCGAGCACTACGCCGGCCAGAGAGACGGGACGTGCAAGCCGTCGAT
196 CG-A---GC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGACGTGCAAGCCGTGGAT
*
12286960 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
253 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
12287025 CATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
318 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
* *
12287090 TCTATTTTTCACTATTTTTGAAACTTTTTAAGGTTCAGGA-TTTTTAAAATTTTTTCGGAAGGAG
383 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAG
** * * *
12287154 TTTTGGCCCCAAACTTATTAGACATGATCCTTGTATTTTTATTGGC-T-TACAAAAAAATTCAGC
447 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
12287217 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
512 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
12287282 AATTGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
577 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
12287347 TTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTG-GC
642 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
12287411 ACACCCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCTGCCGGTCAGGTTCTCCGGCGACGCTC
707 ACACCCCCCAGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
* * * *
12287476 TGGCGATGGTGCC-CTGACGAAAAAAAATACGGCACCAGCAGATGCCCGAGCCCAGCATGTGCTA
772 TGGTGATGGTGCCTC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* * * * * *
12287540 TCGCAACCCTCAGTTTGGTACGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTG
836 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* * * ** * *
12287599 GGAATGACCTCTGTATGCTTAAGTCAACCCATTAAACGAGCGTGCGAGCGCTCAGCCAGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* ** * *
12287664 GGGCGGGATGCGCAAGCCGGGGA-CTGACCGGGTCCCCCTCTATGTGCTGCCAATCCTGCTGCCG
66 GGGCGGGATGCGCAAGCCGGGGATC-GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* * * * * * * * *
12287728 CCACCCACAGTTTGGTCTGATCCTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACGGACGAC
130 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * *
12287793 ACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAAAGACGGGATGCGCAAGTCGCGGATCGAGAGG
195 ACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGACGTGCAAGCCGTGGATCGATAGG
* * * *
12287858 GTGGTAGGTGGGTTTTGGCACATCTTTATTTTTCTGCATTCCAATGCCATTTTTATGGCTTGTAA
260 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
12287923 ATTCATACAATGGTCTCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
325 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
* * **
12287988 TTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTCAC
390 TTCACGATTTTTGAAACTTTTTACGG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * *
12288053 CCCCAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACGAAAAAATGCAGCTAAAAAC
454 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
12288118 TCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATAGCT
519 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * * *
12288183 ACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGCGAGAGTTCTCCAGGTTTGATG
584 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
12288248 AGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCACACATCATGTGCGTACA--CC
649 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * *
12288311 CCAGGGACCCCCGATTGTCGGAACCTCAATGCCGTCGGTCAGGTTCT-C--C-A-G--C----GA
714 CCA-GGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGTGA
* * * * * *
12288365 TGCTGCCCCAACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGCAAC
778 TGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
* * * * * *
12288430 TCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTGCGTATGCTTAGACTG
843 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* * * * * * * *
12288482 GGAGTGAACTCTGTATGCCTAAGTCAACCCCCGAAACGGGCGTGCAGGCTCTCAGCCAGCCAAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** * * * *
12288547 GGGCGGAATGCGCAAGCCGGGGATCGATCGAGTCCATCTTTGCGTGTTCCCGATCCTGCTGCCAT
66 GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
* *
12288612 AACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAC
131 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-A-
*
12288677 GAGCAGGCGGGCAAGGCGGGCGGCGGGCGGGCACTACGCCAGCCAGAGAAGA-GGGA--TGCATA
194 -A--A--C--G--A-GC--G-GGCGGGCGGGCACTACGCCGGCCAGAG-AGACGGGACGTGCA-A
* *
12288739 GCCCGTGGATCGATAGGGTGGTAGGGTGGGTTTTAGGCACATCTTCGATATTTTTGCGTGCCAAG
244 G-CCGTGGATCGATAGGGTGGTA-GGTGGG-TTTAGGCACATCTTC-ATATTTCTGCATGCC---
*
12288804 TAATGCCAATTTTTAATGGCTTGTAAATTCATACAAATGGTCCTCTTAAG-CTTCAC-AGAAG-T
302 -AATGCC-ATTTTT-ATGGCTTGTAAATTCATAC-AATGGTCC-CTTAAGCCTTCACGTGAAGTT
* * * ** * *
12288866 TCATGGCAAACACGACTCGTTTCCTA-TTTTCAGCGA-TTTCAAAACATGTTT-CGGTTTGGAGA
362 TCATGGC-AAGACGACTCATTTTCTATTTTTCA-CGATTTTTGAAAC-TTTTTACGG-TTCG-GA
* * * *
12288928 TTTTTTTAAAATTTTTT-GGAAGGAGTTTTTG-CCAAAACTTGGTAGACATGATGCCCTTAATTA
422 -TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT--CCTT--GTA
* *
12288991 TTTTT-TTGGCCATGCACAAAAAAATTAAGCCAAAAA-TCGAAGTGGTACAAGA--TTGTGACCC
482 TTTTTGTTGG-CATGCACAAAAAAATTCAGCTAAAAACTCGAAGT-GTACAAGATTTTGTGA-CC
*
12289052 ATTTGAAAAAAGTGT-CCCATTTCAGACACTTTATTGGCTACTGGCAGCAAAACCCTGTAAAAAT
544 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AAA-CCTGT-AAAAT
12289116 CTCAAATGCTCTTTAAGGGGGTGTGAGTT-TCTGAGGTTTGATGAGGGATAGGGG
606 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGG
12289170 NNNNNNNNNN
Statistics
Matches: 5270, Mismatches: 586, Indels: 318
0.85 0.09 0.05
Matches are distributed among these distances:
862 9 0.00
863 180 0.03
864 35 0.01
865 18 0.00
866 10 0.00
867 10 0.00
868 7 0.00
869 16 0.00
870 8 0.00
872 1 0.00
874 3 0.00
875 178 0.03
876 4 0.00
877 3 0.00
879 6 0.00
880 1 0.00
881 16 0.00
882 17 0.00
883 345 0.07
884 137 0.03
885 6 0.00
886 4 0.00
887 84 0.02
888 432 0.08
889 539 0.10
890 58 0.01
891 197 0.04
892 88 0.02
893 613 0.12
894 731 0.14
895 54 0.01
896 31 0.01
897 15 0.00
898 124 0.02
899 723 0.14
900 19 0.00
901 143 0.03
902 85 0.02
905 6 0.00
906 55 0.01
907 59 0.01
908 68 0.01
909 36 0.01
910 44 0.01
911 52 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGACGTGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
TCACGATTTTTGAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
AGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGTGATGG
TGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
Found at i:12286905 original size:889 final size:890
Alignment explanation
Indices: 12278066--12289169 Score: 12430
Period size: 869 Copynumber: 12.5 Consensus size: 890
12278056 AGGGGTGGGT
* * *
12278066 TGCGCAAGCCGGGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
12278131 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
12278196 GCAACACGAATCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA
*** * *
12278261 ATTTTTT-GGAAGGCA-TTTTTTACCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCAT
196 ATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
12278324 GCACAAAAATATTCAGCTAAAGACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
260 GCAC--AAATA-T-A---AAA-ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
12278389 CCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGG
317 CCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
12278454 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCA
382 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * **
12278519 TCACACATCATGTGCGCACACCCCCCCGACCCCTCCGATCGTCGGAACCCTAATGCTGCCGAACA
447 TCACACATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCA
* * *
12278584 AGTTCT-C--C---G---GCGATGGTGCCCCGACAAAGAAAAATACGGCACCAACACATGCCCGA
511 GGTTCTCCGACGATGCTCGCGATGGTGCCCCG--AAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * * *
12278640 GCCTAGCATGTGCTGCCGCAACCCTCAGT-TCGGTCTGATCTTAGACTGGGAATGAACTTCATAT
574 GCCCAGCATGTGCTACCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
12278704 GCTTAGACTGTGAATGAACTCCGTCTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
638 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * *
12278769 CCGGCCAGAGGGGCGGGATGCACAAGCAGGGGATCGGCCGGGTCTCCCTCTGCGTGCTACCGATC
703 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
** *** *
12278834 CTGCTGCTGCAACCCTC-GATCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
768 CTGCTGCCACAACCCTCAG-TCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
12278898 AACCAACGAAATGA---GTGGACGGGCGGGCGGGCACTACGCCGGCTAGAGAGATGGGA
832 AACCGACGAAACGACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
** * * ***
12278954 TGCGCAAGCTATGGATCGATGGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTATGTGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* *
12279019 AATCCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
12279084 GCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTC-AGAATTTTTTAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAA
* * *
12279148 AATTTTTTCGAAAAGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
195 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
12279213 GCACAAAAAAGTTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
260 GCAC---AAA--T-A--TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
12279278 CCCATTTCAGACACTTTAAAGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
317 CCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
12279343 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCA
382 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
12279408 TCGCACATCATGTGCGCACACCCCCCCTTCGGCCCCTCCGATCGTCAGAACCCCAATGCCGCCAG
447 TCACACATCATGTGCGCACA-CCCCCC--CGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGG
* * * * * *
12279473 TCAGCTTCTCCGATGATGCTACGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCATCACAAG
508 TCAGGTTCTCCGACGATGCT-C-GCGATGGTGCCCC-G-AAAGAAAAATGCGGCACCAGCACATG
* * * * *
12279538 CCCGAGCCCAGTATGTGCTACCGTAAACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTC
569 CCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
12279603 GTATGCTTAGACTGGGAATGAAATCAGTATGTCTAAGTCAACCCAGGAAACGAGCGTGCGGGCGC
634 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * ***
12279668 TCAGCCGGCCAGAGGGGCAGGATGTGCAAGCTGGGGATCGATCGGGTCCTCTTCTATATGCTGCC
699 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCC
* * *
12279733 GATCCTACTACCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
764 GATCCTGCTGCCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * ** * *
12279798 GCCAACCGACAAAACAAGCGGGCGGACGGGCAGGCGGGCACTACATCAGCCAGAGAGACGGCA
829 GCCAACCGACGAAACGA-CGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * *
12279861 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
12279926 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
12279991 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA
* * * * * * *
12280056 ATTTTTTTGAAAAGATTTTTGGGCCCAAACTTGGTAGACATGATCCTTCTATTTTTGTTGGCATG
196 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
12280121 TACAAAAAAATTCAGCTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
261 --CACAAATA-T-A---AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
12280186 CATTTCAGACACTTTAAAGGCTATTGGCAGCGAACTTGTAAAATCTCAAATGCTCTTTAAGGGGG
319 CATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
12280251 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAGATAGGGGCCAAGTACCAGCACCCATC
384 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
12280316 ACACATCATGTGCGCACACCCCCCCGACGCCCCCGATCGCCCGAACCCCAATGCAG-CTGGTCAG
449 ACACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAG
** * * * * * *
12280380 GTTCTCCGGTGATGCTCTGGTGATGGTACCCTGGCG-AAGAAAAATGCGACACGAGTACATGCCT
512 GTTCTCCGACGATGCTC--GCGATGGTGCCC---CGAAAGAAAAATGCGGCACCAGCACATGCCC
* * * ** * *
12280444 GAGCCCAACATCTACTGTCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCTGTA
572 GAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* *
12280509 TGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
637 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
12280574 ACCGGCTAGAGGGGCAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGAT
702 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGAT
* * ** * * *
12280639 CCTACT-CCACAACCCTCTGTCTGGTCCGATCTTAGTCTGGGAATGAACTTCGTATGCCTAAGGC
767 CCTGCTGCCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
12280703 AACCGATGAAAAGAGCGGGTGGACGGGCGGGCGGGCACTACGCCTGTCAGAGAGACGGGA
832 AACCGACGAAACGA-CGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
*
12280763 TACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
12280828 AATGCCATTTTT-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
12280892 GC--GACGACTCCG-TTTCTA--TTTCACGATTTTTTGAAACTTTTTGC-GTTCAAGATTTTTTA
131 GCAAGACGACT-CGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
* *
12280951 AAATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCT
194 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
12281015 TGCACAAAAAAAATCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
259 TGCAC-----AAAT-A--TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
12281080 CCCAATTTCAGACACTTTAATGGCTACTGGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAG
316 CCCCATTTCAGACACTTTAATGGCTA-TTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
12281145 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATACGGGCCAAGTACCAGTACC
380 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
12281210 CATCACACATCATGTGCGCACACCCCCCCTAGGCCCCTCCGATCGCCGAAACCCCAATGCTGCCG
445 CATCACACATCATGTGCGCACACCCCCCC--GGCCCC-CCGATCGCCGGAACCCCAATGCCGTCG
* *
12281275 GTCAGCTTCTCC-AGCGA---T-GC--TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG
507 GTCAGGTTCTCCGA-CGATGCTCGCGATGGTGCCCCGA--AAGAAAAATGCGGCACCAGCACATG
* * *
12281333 CCCGAGCCCAGAATGTGCTGCCGCAACCCTCGGTC----CAG-TC-----C---G-AT---CT--
569 CCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
* * *
12281379 -T-TG----G-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCGT
634 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * *
12281437 TCAGCCGGCCAGAGGTGCGGGATGCGTAAGCC-AGGGATCG-GCTGGGTCCCCCTCTGCGTGCTA
699 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATC-GGGTCCCCCTCTGCGTGCTG
* * ** *
12281500 CCGGTCCTGCTACCACAACCCTTGGTCCT-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
762 CCGATCCTGCTGCCACAACCCTCAGT-CTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCC
* *
12281564 TAAGCCAACCGACGAAACGA---GCGGGCGGGCGGGCAGAGCACTACGCCGGTCAGAGAGACGGG
826 TAAGCCAACCGACGAAACGACGGGCGGGCGGGCGGGC-GGGCACTACGCCGGCCAGAGAGACGGG
12281626 A
890 A
* *
12281627 TGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
**
12281692 AATGCCATTTTTATATCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * * *
12281757 GCAAGACGACTTGTTTTTTATTTTTCACAATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTTAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA
* * *
12281822 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACATGATCCTTTTATTTTTGTTGGCATG
196 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
12281887 CACAAATAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
261 CAC----AAA-T-A--TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
12281952 CCATTTCAGACACTTTAAAGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
318 CCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
12282017 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATACGGGCCAAGTACCAGTACCCAT
383 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
12282082 CACACATCATGTGCGCACACCCCCCCTAGGCCCCTCCGATCGCCGAAACCCCAATGCTGCCGGTC
448 CACACATCATGTGCGCACACCCCCCC--GGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTC
* *
12282147 AGCTTCTCC-AGCGA---T-GC--TGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCC
510 AGGTTCTCCGA-CGATGCTCGCGATGGTGCCCCGA--AAGAAAAATGCGGCACCAGCACATGCCC
* * * * *
12282205 AAGCCCAGAATGTGCTGCCACAA-CC-C--TC-GGT-C---C--AGTCT--G-AT---CT---T-
572 GAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
12282249 TG----G-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCGTTCA
637 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
12282309 GCCGGCCAGAGGTGCGGGATGTGTAAGCC-AGGGATCG-GCTGGGTCCCCCTCTGCGTGCTACCG
702 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATC-GGGTCCCCCTCTGCGTGCTGCCG
* * * *
12282372 GTCCTGCTACCACAACCCTC-GATCCT-ATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
765 ATCCTGCTGCCACAACCCTCAG-T-CTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
12282435 AGCCAACCGATGAAACGA---GCGGGCGGGCGGGCGGAGCACTACGCCGGTCAGAGAGACGGGA
828 AGCCAACCGACGAAACGACGGGCGGGCGGGCGGGCGG-GCACTACGCCGGCCAGAGAGACGGGA
* *
12282496 TGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
**
12282561 AATGCCATTTTTATATCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * *
12282626 GCAAGACGACTCGTTTTTTATTTTTCACAATTTTTAAAACCTTTTGCGGTTCGAGATTTTTTAAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA
* * * *
12282691 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGCAGACTTGATCCTTTTATTTTTGTTGGCATG
196 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
12282756 CACAAATAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
261 CAC----AAA-T-A--TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
12282821 CCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
318 CCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
12282886 GTGTGAGTTCTTGAGGATTGATAAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
383 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
12282951 CGCACATCATGTGAGCACA-CCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAA
448 CACACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
* * ** *
12283015 GTTCTCCGGCGATGGT-GCCCTGGT-----G-AAGAAAAATACGGCACCAGCACATGCCCGAGCC
512 GTTCTCCGACGATGCTCGCGATGGTGCCCCGAAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * ** * *
12283073 TAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTATACTTGGAATGAACTCCGTATGCTT
577 CAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
12283138 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGG
642 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * * * * ** * **
12283203 CCAAAGGAGCAGGATGCGCAAGCTGGGGAACGGTTGGGTGCCCCTCTATGTGATATCGATCCTGC
707 CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
** * * * * * * ** *
12283268 TGCTGCAACCCTCGGTCTGGTCTGATCTTAGCCTAGGAATCAACTTCGTACACCTAAGTCAACCG
772 TGCCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
12283333 ATGAAACGA---GCGGGTGGGCGGGCGGGCACTACGCTGGCCAGAAAGACGTGA
837 ACGAAACGACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *
12283384 TGCGCAAGCCGTGGATCGATATGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGCATGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
12283449 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * ** *
12283514 GCAAGACAACTCATTTTCTACATTTCATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAA
** * * *
12283578 AATTTTTTCAAAAGGTGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
195 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
12283643 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
260 GCAC----AAA-T-A--TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * * * * *
12283708 CCCGTTTGAGACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTTTTTAA-AG
317 CCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* ** * *
12283772 GGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGTTCAATATAAGGGCCAAGCAACAGCACCCA
382 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
*
12283837 TCACACATCATGTGCGCACACTCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
447 TCACACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
* * * *
12283902 GGTTCTCCGGCGATGCTCTG-GTAATGGTGCCTCGACGTAGAAAAATGCGACACCAGCACATGCC
511 GGTTCTCCGACGATGCTC-GCG--ATGGTGCCCCGA--AAGAAAAATGCGGCACCAGCACATGCC
* * *
12283966 CGAGCCCAACATGTGCTACCGCAACCCTTGGACTGGTCCGATCTTAGACTGGGAATGAACTCCGT
571 CGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * * *
12284031 ATGCTTAGA-TCAGGAATGAACTCCGTATGCCTAAGTCAACACATGAAATGAGCGGGTGGGCGCT
636 ATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * * *
12284095 CAGCCGGCCAGATGGGCGGGATACGCAAG-CTAGGGATCGGTCGGGTCTCCCTCTGTGTTCTGTC
700 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTGCGTGCTGCC
* * * * * *
12284159 GATCCTACTACCCCAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAA
764 GATCCTGCTGCCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
12284224 GCCAATCGACGAAACGA-------GCGGACAGGCGGGAACTACGCCGG-CAGAGAGACGGGA
829 GCCAACCGACGAAACGACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * **
12284278 CGTGCAAGCCGTGGATCGATAGGGTGGTAGGCCGGTTTAGGCACATCTTCATATTTCTGCATGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
12284343 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * ** *
12284408 GCAAGACAACTCATTTTCTACATTTCATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAA
** * * *
12284472 AATTTTTTCAAAAGGCGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
195 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
12284537 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
260 GCAC----AAA-T-A--TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * * * * *
12284602 CCCGTTTGAGACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTTTTTAA-AG
317 CCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
12284666 GGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGCAACAGCACCCA
382 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
** * * * *
12284731 TTGCACATCATGTGCGCACACTCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCAGTCGGTCAG
447 TCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
* * * * *
12284796 GTTCTCCGGCGATGCTCTGGTGATGGTGCCTCGACGTAGAAAAATGCGACACCAGCACATGCCCG
512 GTTCTCCGACGATGCTC--GCGATGGTGCCCCGA--AAGAAAAATGCGGCACCAGCACATGCCCG
* * *
12284861 AGCCCAACATGTGCTACCGCAACCCTTGGACTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
573 AGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
12284926 GCTTAGA-TCAGGAATGAACTCCGTATGCTTAAGTCAACACATGAAATGAGCGCGTGGGCGCTCA
638 GCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
12284990 GCCGGCCAGATGGGCGGGATACGCAAGCC-AGGGATCGACCGGGTCTCCCTCTGCGTTCTGTCGA
702 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGA
* * * * * *
12285054 TCCTACTACCCCAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGC
766 TCCTGCTGCCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
12285119 CAATCGACGAAACGA-------GCGGACAGGCGGGCACTACGCCGG-CAGAGAGACGGGA
831 CAACCGACGAAACGACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * **
12285171 CGTGCAAGCCGTGGATCGATAGGGTGGTAGGCCGGTTTAGGCACATCTTCATATTTCTGCATGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
12285236 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * ** *
12285301 GCAAGACGACTTCGTTTTCTA-TTTTAACAATTTTCGAAAAC-TTTCGCAGTTCGA-ATTTTTTT
131 GCAAGACGAC-TCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTACGGTTCGAGA-TTTTTT
* ** * *
12285363 ACAATTTTTTTTGAAGGATTTTTGGCCCCAAACTTGG-AGACGTGATCCTTGAAATTATATTGTT
193 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TATT-T-TTGTT
12285427 GGCATGCACAAAAAATTCATGCTAAAAACTCGGAAGTGTACAAGATTTTGTGACCATATTGAAAA
255 GGCATGCAC---AAA-T-A---TAAAAACTC-GAAGTGTACAAGATTTTGTGACCAT-TTGAAAA
* * *
12285492 AGAGTGTCCCCATCTTCAGACACTTTAATGGCTTACTAGGCAACAACCCTGTAAAAATCTC-AAT
310 A-AGTGTCCCCAT-TTCAGACACTTTAATGGC-TA-TTGGCAGCAAACCTGT-AAAATCTCAAAT
* * *
12285556 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGAGGCCAATATAACGGCCAAG
370 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * * *
12285621 TACTAGCACCCATCGCACATCATGCGCGCACA-CCCCCTGGCCCCCCGATCCCCGGAACCACAAT
435 TACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAAT
* * * * ** * *
12285685 GCCGTCGGTCAGGTTCTCTGGCGATACTCCAGTGATGGCACCCCGGTGAAGAAAAATGCGACACC
500 GCCGTCGGTCAGGTTCTCCGACGATGCT-C-GCGATGGTGCCCC-G-AAAGAAAAATGCGGCACC
* * *
12285750 AGCACATGCCCAAGCCCAGCAAGTGCTACCACAA-CC-C--TC--G---G----T---CT--G-A
561 AGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
* * *
12285796 T--A-T--G-AT-CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGT
626 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
12285854 GCGTGCGCTCAGCCGGCTAAAGGGGTGGGATGCGCAAGCCGGGGATCAATCGGGTCCCCCTCTGC
691 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGC
* *
12285919 GTGCTGCCGATCCTGCTGCCACAACCCTCAGT-TCGGTCGAATCTTAGAATGGGAATGAACTCCG
756 GTGCTGCCGATCCTGCTGCCACAACCCTCAGTCT-GGTCTAATCTTAGACTGGGAATGAACTCCG
* * * **
12285983 TATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCAGGCGGGCAGGCACTACGCCGGTTAGAGA
820 TATGCCTAAGCCAACCGACGAAACGA-CGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* *
12286048 TACGAGA
884 GACGGGA
* * * * *
12286055 TACGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATACGTGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* *
12286120 AATGCCATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACATGAAG-TTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* ** * *
12286184 GCAAGACGACTCATTTTCTATTTTTCATAATTTTTGAAACTTTTCATGGTTCGAGATTTTTTAAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA
* ** *
12286249 ATTTTTTCGGAAGGAGTTTTTGCAACAAACTTGGTAGACGTGATCCTTGTATTATTGTTGGCATG
196 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
12286314 CAC-AA-A-AAAAACTCGAATTTTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCGATTTTA
261 CACAAATATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
12286375 GACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
326 GACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** *
12286440 TCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
391 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* *
12286505 ATGTGCGTACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAA-GCCGTCGGTCAGGTTCTCCGA
456 ATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * *
12286569 CGATGCTCCGACGATGGTGCCCTTGTAAAGAAAAA-GACGGCCCCAGCATATGCCCGAGCCCAGC
521 CGATGCT-CG-CGATGGTGCCC-CG-AAAGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGC
* * *
12286633 ATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAAC
581 ATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
** ** * *
12286698 TAAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGACCACTCAGCCGACCAG
646 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * **
12286763 AGGGCCAGGATGCGCAAGCCGAGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCCTACTGTT
711 AGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
** * ** *
12286828 GTAACCCTCAGTCCGGTCTAATCTTAGACTGGGAACCAACTCTGTATGCCTAAGCCAACCGACGA
776 ACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
12286893 AACGAACGGGCGGGCGGTCGGGCGAGCACTACGCCGGCCAGAGAGACGGGA
841 AACG-ACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * *
12286944 CGTGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
12287009 AATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
12287074 GCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTAAGGTTC-AGGA-TTTTTAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAA
** * * *
12287137 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTATTAGACATGATCCTTGTATTTTTATTGGCTT
195 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
12287202 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
260 GC--ACAAA-T-A--TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* **
12287267 CATTTCAGACACTTTAATTGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
319 CATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
12287332 TGTGAGTTCTCAAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT
384 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
12287397 GCACATCATGTG-GCACACCCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCTGCCGGTCAGGT
449 ACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* * * *
12287461 TCTCCGGCGACGCTCTGGCGATGGTGCCCTGACGAAA-AAAAATACGGCACCAGCAGATGCCCGA
514 TCTCCGACGATGCTC--GCGATGGTGCCC---CGAAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * *
12287525 GCCCAGCATGTGCTATCGCAACCCTCAGTTTGGTACGATCTTAGACTGGGAATAAACTCCGTATG
574 GCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
12287590 CTTAGACTGGGAATGACCTCTGTATGCTTAAGTCAACCCATTAAACGAGCGTGCGAGCGCTCAGC
639 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
12287655 CAGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-CTGACCGGGTCCCCCTCTATGTGCTGCCAATC
704 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-GATCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * * *
12287719 CTGCTGCCGCCACCCACAGTTTGGTCTGATCCTAGATTGGGAATGAACTTCGTATGCCTAAGCCA
768 CTGCTGCCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
12287784 A-CG--G--ACGAC--ACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAAAGACGGGA
833 ACCGACGAAACGACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * * * * *
12287835 TGCGCAAGTCGCGGATCGAGAGGGTGGTAGGTGGGTTTTGGCACATCTTTATTTTTCTGCATTCC
1 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* *
12287900 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACCTGAAGTTTCATG
66 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
12287965 GCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAA
131 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA
** * *
12288030 ATTTTTTCGGAAGGAGTTTTCACCCCCAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
196 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
12288095 CACGAAAAAATGCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCC
261 CAC----AAAT--A--TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * * *
12288160 CCGTTTCAGACACTTTAATAGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGG
318 CCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
12288225 GCGAGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCCAT
383 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* ** * * * *
12288290 CACACATCATGTGCGTACA-CCCCAGGGACCCCCGATTGTCGGAACCTCAATGCCGTCGGTCAGG
448 CACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
*
12288354 TTCTCC-AGCGATGCT-GC-------CCCAAC-AAAGAAAAATGTGGCACCAGCACATGCCCGAG
513 TTCTCCGA-CGATGCTCGCGATGGTGCCC--CGAAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * *
12288409 CCTAGCATGTGCTACCGCAACTCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTGCGTATGC
575 CCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
12288474 TTAGACTGGGAGTGAACTCTGTATGCCTAAGTCAACCCCCGAAACGGGCGTGCAGGCTCTCAGCC
640 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * ** * * *
12288539 AGCCAAAGGGGCGGAATGCGCAAGCCGGGGATCGATCGAGTCCATCTTTGCGTGTTCCCGATCCT
705 GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * *
12288604 GCTGCCATAACCCT-TGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
770 GCTGCCACAACCCTCAG-TCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
12288668 CCGACGAACGAGCAGGCGGGCAAGGCGGGCGGCGGGCGGGCACTACGCCAGCCAGAGAAGA-GGG
834 CCGACGAA--A-C-GACGGGC--GG-GCG-GGCGGGCGGGCACTACGCCGGCCAGAG-AGACGGG
12288732 A
890 A
*
12288733 T--GCATAGCCCGTGGATCGATAGGGTGGTAGGGTGGGTTTTAGGCACATCTTCGATATTTTTGC
1 TGCGCA-AG-CCGTGGATCGATAGGGTGGTA-GGTGGG-TTTAGGCACATCTTC-ATATTTCTGC
*
12288796 GTGCCAAGTAATGCCAATTTTTAATGGCTTGTAAATTCATACAAATGGTCCTCTTAAG-CTTCAC
61 ATGCC----AATGCC-ATTTTT-ATGGCTTGTAAATTCATAC-AATGGTCC-CTTAAGCCTTCAC
* * * ** *
12288860 -AGAAG-TTCATGGCAAACACGACTCGTTTCCTA-TTTTCAGCGA-TTTCAAAACATGTTT-CGG
118 GTGAAGTTTCATGGC-AAGACGACTCGTTTTCTATTTTTCA-CGATTTTTGAAAC-TTTTTACGG
* * * *
12288920 TTTGGAGATTTTTTTAAAATTTTTT-GGAAGGAGTTTTTG-CCAAAACTTGGTAGACATGATGCC
180 -TTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT--C
* * *
12288983 CTTAATTATTTTT-TTGGCCATGCACAAAAAAATTAAGCCAAAAATCGAAGTGGTACAAGA--TT
241 CTT--GTATTTTTGTTGG-CATGCAC--AAATA-T-A---AAAACTCGAAGT-GTACAAGATTTT
* *
12289045 GTGACCCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTATTGGCTACTGGCAGCAAAACCCTG
295 GTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGC-AAA-CCTG
12289109 TAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-TCTGAGGTTTGATGAGGGATAGGGG
357 T-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGG
12289170 NNNNNNNNNN
Statistics
Matches: 8995, Mismatches: 934, Indels: 551
0.86 0.09 0.05
Matches are distributed among these distances:
862 10 0.00
863 244 0.03
864 133 0.01
865 75 0.01
866 158 0.02
867 91 0.01
868 38 0.00
869 1019 0.11
870 122 0.01
871 6 0.00
872 3 0.00
874 5 0.00
875 174 0.02
876 5 0.00
877 5 0.00
878 2 0.00
879 4 0.00
880 3 0.00
881 15 0.00
882 22 0.00
883 339 0.04
884 145 0.02
885 3 0.00
886 1 0.00
887 80 0.01
888 620 0.07
889 803 0.09
890 74 0.01
891 209 0.02
892 179 0.02
893 597 0.07
894 750 0.08
895 50 0.01
896 69 0.01
897 121 0.01
898 262 0.03
899 725 0.08
900 62 0.01
901 195 0.02
902 264 0.03
903 516 0.06
904 5 0.00
905 14 0.00
906 245 0.03
907 336 0.04
908 74 0.01
909 42 0.00
910 29 0.00
911 52 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA
ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAATATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
ATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
CGATGCTCGCGATGGTGCCCCGAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
CGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAAC
CCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
CGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
Found at i:12287600 original size:26 final size:26
Alignment explanation
Indices: 12287564--12287619 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
12287554 TTGGTACGAT
12287564 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
12287590 CTTAGACTGGGAATGACCTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
12287616 CTTA
1 CTTA
12287620 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:12288489 original size:26 final size:26
Alignment explanation
Indices: 12288447--12288499 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12288437 CTGATCTGAT
12288447 CTTAGACTAGGAATGAACTGC-GTATG
1 CTTAGACTAGGAATGAACT-CTGTATG
* *
12288473 CTTAGACTGGGAGTGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
12288499 C
1 C
12288500 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:12290455 original size:26 final size:26
Alignment explanation
Indices: 12290426--12290476 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12290416 CGGTCCGATC
12290426 TTAGACT-GCGAATGAACTCCGTATGG
1 TTAGACTAG-GAATGAACTCCGTATGG
12290452 TTAGACTAGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
12290477 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:12291350 original size:26 final size:26
Alignment explanation
Indices: 12291300--12291351 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
12291290 TGATCCAATT
* **
12291300 TTAGATTGGGTATGAACTCTGTATGC
1 TTAGATTGGGAATGAACTCCATATGC
*
12291326 TTAGATTGTGAATGAACTCCATATGC
1 TTAGATTGGGAATGAACTCCATATGC
12291352 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (26 bp):
TTAGATTGGGAATGAACTCCATATGC
Found at i:12292103 original size:26 final size:26
Alignment explanation
Indices: 12292067--12292122 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12292057 CCGGTTTGAT
*
12292067 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12292093 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12292119 CTTA
1 CTTA
12292123 AGTCAACTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12292982 original size:26 final size:26
Alignment explanation
Indices: 12292953--12293006 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
12292943 GGTCTGATCT
*
12292953 TAGATTGGGAATGAACTCTGTATGCC
1 TAGATTGGGAATGAACTCCGTATGCC
12292979 TAGATTGGGAATGAACTCCGTATGCC
1 TAGATTGGGAATGAACTCCGTATGCC
12293005 TA
1 TA
12293007 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
TAGATTGGGAATGAACTCCGTATGCC
Found at i:12294236 original size:11 final size:11
Alignment explanation
Indices: 12294220--12294252 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
12294210 CGATCAGGTT
12294220 CTCCGACGATG
1 CTCCGACGATG
12294231 CTCCGACGATG
1 CTCCGACGATG
12294242 CTCCGACGATG
1 CTCCGACGATG
12294253 GTGCCCCGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:12295270 original size:26 final size:26
Alignment explanation
Indices: 12295234--12295286 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12295224 CCGGTCCGGT
* *
12295234 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAAAGAACTTC-GTATG
12295260 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTTCGTATG
12295286 C
1 C
12295287 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTTCGTATG
Found at i:12295479 original size:901 final size:897
Alignment explanation
Indices: 12293725--12296159 Score: 3330
Period size: 901 Copynumber: 2.7 Consensus size: 897
12293715 GACGGGTGGT
* *
12293725 AGGTGGGTTTTGGCACATCTTCATATTTTTGCAAT-CCAATGCCATTTTTATGGCTTGTAAATTT
1 AGGTGGGTTTAGGCACATCTTCATATTTTTG-AATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
12293789 GTACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCA
65 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
**
12293854 TGATTTTTGAAACATTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGGAAGGAGTTTTGGACCC
130 TGATTTTTGAAAC-TTTTACGGTTCGGGATTTTTTAAAATTTTTTT-GGAAGGAGTTTTGGACCC
* * * * *
12293919 AAACTTGGTAGATGTGATCCCTGTACTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCA
193 AAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
* ** *
12293984 AAGTGTATAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACGTTAATGGCTACT
258 AAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
12294049 GGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAG-
323 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-GC
* * * * *
12294113 GGATAGGGGGCCAATAGAAGGGCCAAGTATCAGCACCCATCGCACATCACGTGCGCACACCCCCC
387 GGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCC
* * * * * *
12294178 GACCCCTCTGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGC
452 GGCCCCCCCGATCACCGGAACCCAAATGCCGTCGGTCAGGTTCT-C-A-GA---T-----GATGC
*
12294243 TCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCT
506 TCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
12294308 GTCGTAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
571 GTCGCAACCCTCG-TCTGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAAA
* * * **
12294373 GAACTCTGTAAGCCTAAGTCAACCCACGAAACGAACGTGCAGGTGCTCAGCCGGCCAGAGGGGTG
635 GAACTCTGTAAGCCTAAGTCAACCCACGAAACGAACGTGCAGGCGCTCAACCAGCCAGAGGGGCC
* **
12294438 GGATGCGCAAGCCGGGGATCGTCCGGGTCCCCCTCTGACGTGCTGCTGATCCTGCTGCTGCAAAC
700 GAATGCGCAAGCCGGGGATCGTCCGGGTCCCCCTCTGACGTGCTGCTGATCCTGCTGCCACAAAC
* ** *
12294503 ATCGGTCTGGTTTGATCTTAGACGGGAATGAACTCCATATGCCTAAGCCAACTGACGAAACGAGC
765 ATCGGTCTGATCCGATCTTAGACGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC
12294568 AGCTGGGCGGGCGGGTGGGCACTACGTCAGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATA
830 AGCT----GGGCGGGTGGGCACTACGTCAGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATA
*
12294633 GGATGGC
891 GGATGAC
* **
12294640 AGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
1 AGGTGGGTTTAGGCACATCTTCATATTTTTGAATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
12294705 TACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
66 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * *
12294770 GATTTTGGAAACTTGTTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAA
131 GATTTTTGAAACTT-TTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACCCAA
* * *
12294835 AATTGGTAGAGGTGATCATTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
195 AATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
* *
12294900 GTGTACAAGATTTTGGGACCATTTGAAAAAAATGTCCCCATTCCAGACACTTTAATGGCTACTGG
260 GTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
12294965 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGGCGGA
325 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGCGGA
*
12295030 TA-GGGGCCAATATTACGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGC
390 TAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGC
* * *
12295094 CCCCCCGATCGCCGGAACCCTAATACCGTCGGTCAGGTTCTCAG-TGATGCTCCGACGATGGTGC
455 CCCCCCGATCACCGGAACCCAAATGCCGTCGGTCAGGTTCTCAGATGATGCTCCGACGATGGTGC
** * *
12295158 CCC-AGTGAAGAAAAATGGGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGTCACAACCCTCA
520 CCCGA-TGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTC-
* * * * *
12295222 GTCCGGTCCGGTCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAAAGAACT-TCGTATG
583 GTCTGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCT-GTAAG
* ** * * *
12295286 CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCAGCCATTGGGGCCGAATGTGCATGT
647 CCTAAGTCAACCCACGAAACGAACGTGCAGGCGCTCAACCAGCCAGAGGGGCCGAATGCGCAAGC
* * *
12295351 CGGGGATCAGT-CGGGTCCCCCTCT-ACGTGCTGCTGATCCTGCTGCCACAACCTTCAGT-TCGA
712 CGGGGATC-GTCCGGGTCCCCCTCTGACGTGCTGCTGATCCTGCTGCCACAAACATCGGTCT-GA
* * *
12295413 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCG
775 TCCGATCTTAGAC-GGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGCTGGGCG
* ** * * *
12295478 GGTGGGCACTACGTCGGCCAGAGTTACGGGATGCGCAAGCCGTGGATCGATAGGGTGAT
839 GGTGGGCACTACGTCAGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGATGAC
12295537 AGGTGGGTTTAGGCACATCTTCATATTTTTGCAA-GCCAATGCCATTTTTTATGGCTTGTAAATT
1 AGGTGGGTTTAGGCACATCTTCATATTTTTG-AATGCCAATGCCA-TTTTTATGGCTTGTAAATT
* *
12295601 CTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTC
64 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * **
12295666 ATGATTTTTAAAACTTTTTACGATTCGGGAGTTTTTTTAAATTTTTTTGGAAGGCGTTTTGTTCC
129 ATGATTTTTGAAAC-TTTTACGGTTCGGGA-TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACC
* * *
12295731 C---A-----A-ACGTGATCCTCGTATTTTTGTTGTCTTGCACAAAAAAATTCAGCTAAAAACTC
192 CAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
12295787 GAAGTGTACAAGATTTTGTGG-CCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTA
257 AAAGTGTACAAGATTTTG-GGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
12295851 CTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGG
321 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGG
* * * *
12295916 CGGATAGGGGGCCAATATAATGGCCAAGTACCGGCACCCATCGTACATCATGTGCAAACACCCCC
386 CGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCC
* * * * * * *
12295981 TGGCCCCCCCGATCACCGAAACCCAAATGTCGACGGTCAGGTTGTC-GACGATGCTCCGACGACG
451 CGGCCCCCCCGATCACCGGAACCCAAATGCCGTCGGTCAGGTTCTCAGATGATGCTCCGACGATG
* * *
12296045 GTGCCCCGATGAAGAAAAATATGGCACCAGCACATGCTCGGGCCCAGCATGTGCTG-CTGCAACC
516 GTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACC
12296109 CTCGTCTGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
580 CTCGTCTGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
12296160 CACTACGTCG
Statistics
Matches: 1358, Mismatches: 144, Indels: 61
0.87 0.09 0.04
Matches are distributed among these distances:
890 219 0.16
891 165 0.12
892 1 0.00
896 1 0.00
897 97 0.07
898 104 0.08
899 32 0.02
900 43 0.03
901 244 0.18
902 3 0.00
906 1 0.00
910 1 0.00
911 1 0.00
912 1 0.00
913 90 0.07
914 198 0.15
915 157 0.12
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (897 bp):
AGGTGGGTTTAGGCACATCTTCATATTTTTGAATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
GATTTTTGAAACTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACCCAAA
ATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
TGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGCGGAT
AGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCC
CCCCCGATCACCGGAACCCAAATGCCGTCGGTCAGGTTCTCAGATGATGCTCCGACGATGGTGCC
CCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGTC
TGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCTGTAAGCCTA
AGTCAACCCACGAAACGAACGTGCAGGCGCTCAACCAGCCAGAGGGGCCGAATGCGCAAGCCGGG
GATCGTCCGGGTCCCCCTCTGACGTGCTGCTGATCCTGCTGCCACAAACATCGGTCTGATCCGAT
CTTAGACGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGCTGGGCGGGTGGGC
ACTACGTCAGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGATGAC
Found at i:12296773 original size:675 final size:677
Alignment explanation
Indices: 12295482--12296837 Score: 2502
Period size: 675 Copynumber: 2.0 Consensus size: 677
12295472 TGGGCGGGTG
*
12295482 GGCACTACGTCGGCCAGAGTTACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTT
1 GGCACTACGTCGGCCAGAGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTT
12295547 AGGCACATCTTCATATTTTTGCAAGCCAATGCCATTTTTTATGGCTTGTAAATTCTTACAATGGT
66 AGGCACATCTTCATATTTTTGCAAGCCAATGCCATTTTTTATGGCTTGTAAATTCTTACAATGGT
* * *
12295612 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
* *
12295677 AACTTTTTACGATTCGGGAGTTTTTTTAAATTTTTTTGGAAGGCGTTTTGTTCCCAAACGTGATC
196 AACTTTTTACGATTCGAGAGTTTTTTAAAATTTTTTTGGAAGGCGTTTTGTTCCCAAACGTGATC
* *
12295742 CTCGTATTTTTGTTGTCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
261 CTCGTATTTTTGTTGGCTTGCACAAAAAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTG
* *
12295807 GCCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
326 ACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAAT
12295872 TTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGCGGATAGGGGGCCAATATAAT
391 TTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGCGGATAGGGGGCCAATATAAT
*
12295937 GGCCAAGTACCGGCACCCATCGTACATCATGTGCAAACACCCCCTGGCCCCCCCGATCACCGAAA
456 GGCCAAGTACCGGCACCCATCGTACATCATGTGCAAACACCCCCCGGCCCCCCCGATCACCGAAA
*
12296002 CCCAAATGTCGACGGTCAGGTTGTCGACGATGCTCCGACGACGGTGCCCCGATGAAGAAAAATAT
521 CCCAAATGCCGACGGTCAGGTTGTCGACGATGCTCCGACGACGGTGCCCCGATGAAGAAAAATAT
* * *
12296067 GGCACCAGCACATGCTCGGGCCCAGCATGTGCTGCTGCAACCCTC-GTCTGATCCGATCTTAGAT
586 GGCACCAGCACATGCCCGGGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGAT
12296131 TGGGAATGAACTCCGTATGCTTAGACT
651 TGGGAATGAACTCCGTATGCTTAGACT
12296158 GGCACTACGTCGGCCAGAGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTT
1 GGCACTACGTCGGCCAGAGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTT
12296223 AGGCACATCTTCATATTTTTGCAAGCCAATGCCATTTTTTATGGCTTGTAAATTCTTACAATGGT
66 AGGCACATCTTCATATTTTTGCAAGCCAATGCCATTTTTTATGGCTTGTAAATTCTTACAATGGT
12296288 CCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
*
12296353 AACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTTGGAAGGCGTTTTGTTCCCAAACGTGATC
196 AACTTTTTACGATTCGAGAGTTTTTTAAAATTTTTTTGGAAGGCGTTTTGTTCCCAAACGTGATC
12296417 CTCGTATTTTTGTTGGCTTGCACAAAAAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTG
261 CTCGTATTTTTGTTGGCTTGCACAAAAAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTG
12296482 ACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAAT
326 ACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAAT
12296547 TTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGGCGGATAGGGGGCCAATATAAT
391 TTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGCGGATAGGGGGCCAATATAAT
* *
12296611 GGCCAAGTACCGGCACCCATCGTACATCATGTGCAAACACCCCCCGGCCCCCCCGATCGCCGGAA
456 GGCCAAGTACCGGCACCCATCGTACATCATGTGCAAACACCCCCCGGCCCCCCCGATCACCGAAA
* *
12296676 CCCAAATGCCGACGGTCAGGTTGTCCGGCGATGCTTCGACGACGGTGCCCCGATGAAGAAAAATA
521 CCCAAATGCCGACGGTCAGGTTGT-CGACGATGCTCCGACGACGGTGCCCCGATGAAGAAAAATA
12296741 TGGCACCAGCACATGCCCGGGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGA
585 TGGCACCAGCACATGCCCGGGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGA
12296806 TTGGGAATGAACTCCGTATGCTTAGACT
650 TTGGGAATGAACTCCGTATGCTTAGACT
12296834 GGCA
1 GGCA
12296838 ATGAATTCCG
Statistics
Matches: 658, Mismatches: 20, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
674 133 0.20
675 268 0.41
676 257 0.39
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (677 bp):
GGCACTACGTCGGCCAGAGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTT
AGGCACATCTTCATATTTTTGCAAGCCAATGCCATTTTTTATGGCTTGTAAATTCTTACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
AACTTTTTACGATTCGAGAGTTTTTTAAAATTTTTTTGGAAGGCGTTTTGTTCCCAAACGTGATC
CTCGTATTTTTGTTGGCTTGCACAAAAAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAAT
TTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGCGGATAGGGGGCCAATATAAT
GGCCAAGTACCGGCACCCATCGTACATCATGTGCAAACACCCCCCGGCCCCCCCGATCACCGAAA
CCCAAATGCCGACGGTCAGGTTGTCGACGATGCTCCGACGACGGTGCCCCGATGAAGAAAAATAT
GGCACCAGCACATGCCCGGGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGAT
TGGGAATGAACTCCGTATGCTTAGACT
Found at i:12296829 original size:26 final size:26
Alignment explanation
Indices: 12296800--12296852 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12296790 CCGATCCGAT
* *
12296800 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
12296826 CTTAGACTGGCAATGAATTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
12296852 C
1 C
12296853 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:12297728 original size:26 final size:26
Alignment explanation
Indices: 12297699--12297751 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12297689 CCGATCCGAT
* *
12297699 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
* *
12297725 CTTAGACTGGCAATGAATTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
12297751 C
1 C
12297752 CAAAGTTCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:12298185 original size:903 final size:892
Alignment explanation
Indices: 12296158--12300965 Score: 6115
Period size: 907 Copynumber: 5.4 Consensus size: 892
12296148 TGCTTAGACT
* * *
12296158 GGCACTACGTCGGCCAGAGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTT
1 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * ** *
12296223 AGGCACATCTTCATATTTTTGCAAGCCAATGCCATTTTTTATGGCTTGTAAATTCTTACAATGGT
66 AGGCACATCTTCATATTTCTACTTGCCAATGCCA-TTTTTA--GCTTGTAAATTCATACAATGGT
* **
12296288 CCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
128 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * **
12296353 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGCGTTTTGTTCCCAAAC------G
193 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
12296412 ---TGATCCTCGTATTTTTGTTGGCTTGCACAAAAAAATTCAGATAAAAACTCGAAGTGTACAAG
258 ACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
12296474 ATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
323 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
12296539 TATAAAATTTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATG-GCGGATAGGGGGC
388 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG-GGATAGGGGGC
* * * ** *
12296602 CAATATAATGGCCAAGTACCGGCACCCATCGTACATCATGTGCAAACA-CCCCCCGGCCCCCCCG
452 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCG
* * * * * * * *
12296666 ATCGCCGGAACCCAAATGCCGACGGTCAGGTTGTCCGGCGATGCTTCGACGACGGTGCCCCGATG
517 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTG
* *
12296731 AAGAAAAATATGGCACCAGCACATGCCCGGGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
582 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
*
12296796 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAATTCCGTATGCCTAAGTCA
647 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCA
* * *
12296861 ACCCACGAATTGAGCGTGTGGGCACTCAGCC-GCCAGAGGGGTGGGATGCGCAAGCCAGGGATCG
712 ACCCACGAA-CGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCG
* * * * *
12296925 GTCGGGTCCCCCTCTGCATGCTGCCGATCTTGCTACCGCAACCCTTGGTTCGATCCGATCTTAGA
776 GTCGGGT-CCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * **
12296990 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGATCGGGTGGGCG
840 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCG
* *
12297043 GGCACTACACTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
1 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
12297108 AGGCACATCTTCATATTTCTGCTTGCCAATGTCATTTTTCTGGCTTGTAAATTCATGCAATGGTC
66 AGGCACATCTTCATATTTCTACTTGCCAATGCCA-TTTT-TAGCTTGTAAATTCATACAATGGTC
* * * *
12297173 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTATATTTTTCATGATTTTGGAA
129 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * *
12297238 ACATTTTGCGGTTC-AGGATTTTTTAAAAGTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
194 ACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
12297302 ACATGATCCTTGTATTTCTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
258 ACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
12297367 ATTTTGTGACGCATTTG-AAAACGTGTCCCCATTTCAGACACTTTAAATGGCTACTGGCAGCAAA
323 ATTTTGTGAC-CATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-AATGGCTACTGGCAGCAAA
* *
12297431 CCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGG
386 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
12297496 ACAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTTTCGGCCCC
451 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC---CGGCCCC
* * *
12297561 TCCGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCAGCGGTGGTGCCCC
513 TCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * * * * * *
12297626 GGTAAAGAAAAATACGGCGCCATCATATGCCCGAGCCCAGCATGTGCTACCGTAACACTCGGTCC
578 GGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
12297691 GATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAATTTCGTATGCCAAA
643 GATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCGTATGCCTAA
* * * *
12297756 GTTCTAACCC-CGAATGAGTGTGGTGGGCCACTCAGCTGGCCCAGAGGGGGTGGGATGCGCAAGC
708 G-TC-AACCCACGAACGAGCGT-GCGGG-CACTCAGCCGG-CCAGA-GGGGTGGGATGCGCAAGC
* * * * * **
12297820 CGGGGATCGGTCGGGTCCCCTCTGTATGCTACCGATCTTGCTGCTGC-ACCCTTGGTTTGGTCCG
767 CGGGGATCGGTCGGGTCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCG
* *
12297884 ATCTTAGACCTGGGATTTGAACACCGTATGCCCTAAGCCAACCG-CGAAACGAGCGGACGGGCG
832 ATCTTAGA-CTGGGA-ATGAACTCCGTATG-CCTAAGCCAACCGACGAAACGAGCGGACGGGCG
12297947 GGC-CTACGCCGGCCAGAGAGACGGGATGGCGC-AGCCGTGGGATCGATAGGGTGGTAGGTGGGT
1 GGCACTACGCCGGCCAGAGAGACGGGAT-GCGCAAGCCGT-GGATCGATAGGGTGGTAGGTGGGT
*
12298010 TTAGGCACATCTTCATATTTCTTACGTTCCCAATGCCATTTTCTA-CTTGT-AATTCATACAATG
64 TTAGGCACATCTTCATATTTC-TAC-TTGCCAATGCCATTTT-TAGCTTGTAAATTCATACAATG
* *
12298073 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-CTGTTCTCTATTTTTCACGATTTT
126 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCATGATTTT
* * * * *
12298137 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTGGGCCCCAAAATTCG
190 TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
12298202 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAATTGTAC
255 TAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * *
12298267 AAGATTTTGTGACCGTTTTGAAAAAAGTGCCCCCATTTCAAACACTTTAATTGCTACTGGCAACA
320 AAGATTTTGTGACC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
12298332 AACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG
384 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * **
12298397 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCTCACCCCCGCAACCCCT
449 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCT
* * * *
12298462 CCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCTCG
514 CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * * * * *
12298527 GTAAAGAAAAATATGGCACCAGCACATGCCAGAGCCCAGCATGCGCTGCCGCAACCCTCAGTCTG
579 GTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * * * * * *
12298592 GTCCGATCTTAGATTGGGAATGAAATCCATATGCTCACACTGGGAATGAACTCCGTATGCCAAAG
644 ATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCGTATGCCTAAG
* * *
12298657 TCAACCCACGGAACGAACGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGACGCGCAAGCTGGGGA
709 TCAACCCAC-GAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGA
** * * *
12298722 TCGACCGGGT-CCC-C--C-T-CTG-CG----TGCTGCCACAACCCTCAGACCGGTCCGATCTTA
773 TCGGTCGGGTCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
*
12298776 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAATG-GGCAGGCGGGCG
838 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GCGG-A--CGGGCG
* *
12298835 GGCACTACGTCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
1 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* **
12298900 AGGCACATCTTCATATTTCTA-TGTGCCAGTGTAATTTTTATGGCTTGTAAATTCATACAATGGT
66 AGGCACATCTTCATATTTCTACT-TGCCAATGCCATTTTTA--GCTTGTAAATTCATACAATGGT
* * * **
12298964 CCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCACGATTTTCAA
128 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * * * * *
12299029 AACTATTTACAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGACCCCAAACTTGGTAG
193 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
12299094 ACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
258 ACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
12299159 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAACAAACC
323 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
12299224 TGTAAAATCTCAATTGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
388 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
12299289 AATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGA
453 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGA
* * * * **
12299354 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTATTCGACCATGCTCCGGCG-TGGTACCCCGACGA
518 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGA
* * * * * * * *
12299418 AGAAAAATGCGACACCAGAACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTTGGTCTAGTAT
583 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CG-AT
* * * * *
12299483 --AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTT
646 CCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCGTATGCCTAAGTC
* * * ** * * *
12299546 AACCCACGAAACAAGCGTACGGGCGCTCAGCCGGCCAGAGGGCCGAGATGTGCAAGCTGGGGATC
711 AACCCACG-AACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATC
* * * * * * * * * *
12299611 TGCCGAGTCCCCCTCTACATGCTGCCAATCCTGTTGTCACAACCCTCGATCCGGTCCAATCTTAG
775 GGTCGGGT-CCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* * * * * *
12299676 ACTAGGAATGAACCCCGTATACCTAAGCCAACAGACGAAAGGAACGGGCGGGAGGGTGGGCGGGA
839 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AACGAGC-GGA-------CGGGC
12299741 G
892 G
* ** * *
12299742 GGCACTACGTCGGCCAGAGAGACGAAATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGTGTTT
1 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
12299807 AGGCACATCTTCATATTTCT-GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCT
66 AGGCACATCTTCATATTTCTACT-TGCCAATGCCATTTTTA--GCTTGTAAATTCATACAATGGT
* *
12299871 CCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGA
128 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * **
12299936 AACATTTTAG-GGTTCGAGATTTTTTAAAATTTTTTTGGAAGAAGTTTTACCCCCAAACTTGGTA
193 AAC-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
12300000 GACATGATCCTTGTATTTTTATTGGCATGCGCAAAAAAATTCAGCTAAAAACGCGAAGTGTACAA
257 GACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
12300065 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAAC
322 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
12300130 CTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
387 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
12300195 CAATATAAGGGCCAAGTACCAGCACCCATTGCTCATCATGTGCGCACACCCCCCCGGCCCCCCCG
452 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCG
** ** * * **
12300260 ATCGTGGGAACCCCAATAACGTCGGTCAGGTTCTCC-AGCGATGCTCCGGCAATGGTTTCCCGGT
517 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGGT
* *
12300324 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCGTGTGCTGCCGCAACCCTCGGTCCGGT
581 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
* * * * * * *
12300389 CCGATCTTAAACTGGGAATGAACTCTGTATGCCT-GATTGGGAATGAACTT-TGTATCCCTAAGT
646 CCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA-TTCCGTATGCCTAAGT
* * * * ** * * **
12300452 CATCCCACAAAACGAACATGCGGGTGCTCAGCCTGCTAGAGGGAAGGGATGCGCAAGCCGGGGAT
710 CAACCCAC-GAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGAT
* * * * * *
12300517 CGATCGGGTCCCCCTCTACGTGCTGTCAATCCTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTA
774 CGGTCGGGT-CCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* * * * *
12300582 GACTGGGAATGAACTCTGTATCCCTAAGCCAACCGAGGAAACGTGCGGGCGGGCG
838 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCG
*
12300637 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTT
1 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
12300702 AGGCACATCTTCATGTTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATTCAATGGTC
66 AGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTA--GCTTGTAAATTCATACAATGGTC
* *
12300767 CCTTAAGCGTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAA
129 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * ** *
12300832 ACTTTTTGCGGTTCAAGATTTTTTTAAATTTTTTCAAAAGG-GATTTTGGTCCCAAACTTGGTAG
194 ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGGTAG
* *
12300896 ACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
258 ACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
12300961 ATTTT
323 ATTTT
12300966 AAACTGGGAA
Statistics
Matches: 3426, Mismatches: 406, Indels: 172
0.86 0.10 0.04
Matches are distributed among these distances:
883 14 0.00
884 145 0.04
885 114 0.03
886 35 0.01
887 172 0.05
888 280 0.08
889 234 0.07
890 5 0.00
891 1 0.00
892 1 0.00
893 91 0.03
894 58 0.02
895 377 0.11
896 36 0.01
897 5 0.00
898 15 0.00
899 253 0.07
900 193 0.06
901 15 0.00
902 29 0.01
903 406 0.12
904 141 0.04
905 22 0.01
906 12 0.00
907 678 0.20
908 94 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTAGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTCCGATCG
CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGA
AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGAT
CTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCC
ACGAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGG
GTCCCCTCTGCATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCG
Found at i:12299517 original size:26 final size:26
Alignment explanation
Indices: 12299486--12299538 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12299476 CTAGTATAAT
*
12299486 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12299512 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12299538 C
1 C
12299539 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12301293 original size:385 final size:384
Alignment explanation
Indices: 12300583--12301349 Score: 1205
Period size: 385 Copynumber: 2.0 Consensus size: 384
12300573 CCGATCTTAG
* * *
12300583 ACTGGGAATGAACTCTGTATCCCTAAGCCAACCGAGGAAACGTGCGGGCGGGCGGGCACTACGCC
1 ACTGGGAATGAACTCCGTATCCCTAAGCAAACCGAGGAAACGAGCGGGCGGGCGGGCACTACGCC
12300648 GGCCAGAGAGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
66 GGCCAGAGAGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
** * * *
12300713 CATGTTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATTCAATGGTCCCTTAAGCGTT
131 CAAATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * ** * *
12300778 CACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG
196 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCATGATTTTCAAAACTTTTTACAG
* *
12300843 TTCAAGATTTTTTTAAATTTTTTCAAAAGGGATTTTGGTCCCAAACTTGGTAGACATGATCCTTG
261 TTCAAGATTTTTTTAAATTTTTTCAAAAGGGATTTTGGCCCCAAACTTGGTAGACACGATCCTTG
12300908 TATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTAA
326 TATTTTTGTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTAA
* * * * *
12300968 ACTGGGAATGAACTCCGTATGCCTAAGCAAATCGATGAAACGAGCGGGTGGGCGGGCACTACGTC
1 ACTGGGAATGAACTCCGTATCCCTAAGCAAACCGAGGAAACGAGCGGGCGGGCGGGCACTACGCC
*
12301033 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
66 GGCCAGAGAGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * *
12301098 CAAATTTCTACGTGCCAGTGTAATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTT
131 CAAATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
12301163 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCATGATTTTCAAAACTTTTTACAG
196 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCATGATTTTCAAAACTTTTTACAG
*** **
12301228 TTTGGGA-TTTTTTAAAGTTTTTTCGGAA-GGATTTTTGGCCCCAAACTTGGTAGACACGATCCT
261 TTCAAGATTTTTTTAAA-TTTTTTCAAAAGGGA-TTTTGGCCCCAAACTTGGTAGACACGATCCT
*
12301291 TGTATTTTTTTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
324 TGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
12301350 CTGACCATTC
Statistics
Matches: 348, Mismatches: 32, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
384 52 0.15
385 296 0.85
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (384 bp):
ACTGGGAATGAACTCCGTATCCCTAAGCAAACCGAGGAAACGAGCGGGCGGGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CAAATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCATGATTTTCAAAACTTTTTACAG
TTCAAGATTTTTTTAAATTTTTTCAAAAGGGATTTTGGCCCCAAACTTGGTAGACACGATCCTTG
TATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTAA
Found at i:12301701 original size:26 final size:26
Alignment explanation
Indices: 12301672--12301723 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12301662 CTGGTCCGAT
12301672 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12301698 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12301724 GCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12302604 original size:26 final size:26
Alignment explanation
Indices: 12302575--12302627 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12302565 CTGATCCAAT
*
12302575 CTTAGACTGATAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
12302601 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
12302627 C
1 C
12302628 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:12305275 original size:26 final size:26
Alignment explanation
Indices: 12305236--12305288 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12305226 CTGGTCCGAT
*
12305236 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGAGAATGAACTCT-GTATG
*
12305262 CTTAGATTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
12305288 C
1 C
12305289 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:12307934 original size:26 final size:27
Alignment explanation
Indices: 12307888--12307939 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
12307878 AGTTTGATCA
* *
12307888 TAGATTGGGAAATGACCTCCGTATGCT
1 TAGACTGGGAAATGAACTCCGTATGCT
12307915 TAGACTGGG-AATGAACTCCGTATGC
1 TAGACTGGGAAATGAACTCCGTATGC
12307940 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (27 bp):
TAGACTGGGAAATGAACTCCGTATGCT
Found at i:12308825 original size:26 final size:26
Alignment explanation
Indices: 12308789--12308841 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12308779 CCAGTCCAAT
*
12308789 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12308815 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12308841 C
1 C
12308842 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12309735 original size:26 final size:26
Alignment explanation
Indices: 12309695--12309745 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12309685 GGTCCGATCA
* *
12309695 TAGACTAGGATTGAACTCTGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
12309721 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
12309746 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:12309950 original size:903 final size:900
Alignment explanation
Indices: 12306020--12311478 Score: 7128
Period size: 905 Copynumber: 6.1 Consensus size: 900
12306010 GTTCTCCGGT
* * * **
12306020 GAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCGGCCCGGT
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGT
* * * * * *
12306085 CCGATCCTAGACTGGGAATGAACTTTGTTTGCTTAGACTGGGAATGAACTCTGTATGCCTAAATC
66 CCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
12306150 AACCCACGAAACGAGCGTGTGGGCACTCAGTCGGCCAGAGGGGTGGGATGCACAAGCCT-GGGAT
131 AACCCACGAAACGAGCGTGCGGGC-CTCAGCCGGCCAGAGGGGCGGGATGCACAAG-CTGGGGAT
* * * *
12306214 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTG-TCGCAA-CCTC-GATCTGGTCTGATCT
194 CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCT-GCAACCCTCAG-TCTGGTCTGATCT
* * *
12306276 TAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG--GGCGGGCAGG
257 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGCAGGCGTGCAGG
** * * * * *
12306339 CACTACGCCGGCCAAAGAGGCAGGATGCGCAAACCGTGCATCGATAGGGTGGTAGGTGGGTTTAG
322 CACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * **
12306404 GCACATCTTTATATTTCTACGTGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGAACC
387 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
12306469 TTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTTGTTTTCTATTTTTCACGATTTTTGAAAC
452 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
12306534 TTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCAGATGGAGTTTTGGCCCCAAACATGGTGGACG
517 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
12306599 TGATCCTTGTATTTTGTTTTGGAATGCACAAAAAAATTCAG--GAAAA----AAGTGTACAAGAT
582 TGATCCTTGTATTTT-TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
12306658 TTTGTGACCATTTG-AAAAAGTGTCC-CTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
646 TTTGTGACCATTTGAAAAAAGTGTCCTC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
12306721 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGTGATAGGGGGCCA
710 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
* * * *
12306786 ATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGAGCACACCCCCAGGCCCCCTCGATC
775 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
** * * ** * * * * *
12306851 ACCGGAACCCCAATGCTGTCGGTCAGGTTCTTTGGCGATCCTCCAACAATGGTGCCCCGAT
840 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC
* * * * * *
12306912 GAATAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCGCAACCCTTGGAT-TGA
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCGATCCGG
* * * * * * * * *
12306976 TCCAATCTTAGACTAAGAATGAACTCCGTATTCCTAGGC-GAGAAATAAACTCTGTATGCCTAAG
65 TCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTG-GGAATGAACTCCGTATGCCTAAG
* * * ** * *
12307040 TCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCGGGATGCGTAAGCCGAGGA
129 TCAACCCACGAAACGAGCGTGCGGGC-CTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGGGGA
* * * * * * * * *
12307105 ACGGTCAGGTCCCCCTCTGCGTGCTGCCAATCCTGCT-ATCACAACCCTCGGTCCGGTCTGATCT
193 TCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCT-GCAACCCTCAGTCTGGTCTGATCT
* * *
12307169 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCAGGCGGGC-GGACG-GA
257 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGC-GG-GCGCAGG-CGTG-
* *
12307232 CGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGT
318 CAGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *** *
12307297 TTGGGGACATCTACATATTTCTATGTGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGG
383 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
12307362 TCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCA
448 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
** * * * *
12307427 AAAAGTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTAGTA
513 AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
12307492 GACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAA
578 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
12307557 GATTTTGTGACCATTTGAAAAATGTGCCCCCATTTCAGAAACTTTAATGGCTACT-GCAGCAAAC
643 GATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
12307621 CTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
708 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
** *
12307686 CAATATAAGCACCAAGTACCAGCACCCAACGCACATCATGTGCGCACACCACCCCCTCGG-CCCC
773 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-CACCCCC-CGGCCCCC
* *
12307750 CC-ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCTGACGATGGTGCCCCG
834 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG
*
12307814 AT
899 AC
* * * * * * *
12307816 GAAGAAAAGTGCGGCACCAGCACATGCCCGTGCCCAGCATGTGTTGTCGTAACCCTCAATCCAGT
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGT
** * * * * *
12307881 TTGATCATAGATTGGGAAATGACCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 CCGATCTTAGACTAGG-AATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
12307946 CAACCCACGCAACGAGCGTGCGGGCGCTCAGCCAGCCAAAGGGGTGGGATGCACAAGCCGGGGAT
130 CAACCCACGAAACGAGCGTGCGGGC-CTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGGGGAT
** * * *
12308011 CGGTCGGGTCCCCCTCTACGTGCTGCAAATCCTACTGCTGCAACCCTCACTCTGAT-TATATCTT
194 CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCTGCAACCCTCAGTCTGGTCT-GATCTT
*
12308075 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCAAGCAGGCGTGCTG
258 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGC--GCAGGCGTGCAG
*
12308140 GCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTA
321 GCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
12308205 GGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
386 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * **
12308270 CTTAATCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCACGATTTTCAAAA
451 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * *
12308335 CTTTTTATGCTTCGGGATTTTTTAAAATTTTTTTGAAATGAGTTTTGGCCCCAAACTTGGTAGAC
516 CTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
12308400 CTGATCTTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
581 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
12308465 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
646 TTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
12308530 TAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
711 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* **
12308595 TATAAGGGCCAAGTACCAGCAACCA-CTGCACATCATGTGCGCATGCCCCCCGG-CCCCCCGATC
776 TATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * * * *
12308658 ATCGGAACCCCAATGCTGCCGGTCAGGTGCTCCAGCGATGCTCCGACGATGGTGCCCCGAT
840 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC
* * * * * * * *
12308719 GAAGAAAAATACGACACTAGCACATGCTCGAGCCCAGAATGTGCTGCCGCAACCCTTGGTCCAGT
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGT
* *
12308784 CCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
66 CCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* *
12308849 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGC-GGATTGCGCAAG-TCGGGGA
131 AACCCACGAAACGAGCGTGCGGGC-CTCAGCCGGCCAGAGGGGCGGGA-TGCACAAGCT-GGGGA
* ** ** *
12308912 TCGG-CAAGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTTGGTCTAGTCTGATCT
193 TCGGTC-GGGTCCCCCTCTACGTGCTGCCGATCCTACTGCTGCAACCCTCAGTCTGGTCTGATCT
* * *
12308976 TAGACTGGGAATGAACTCCGTATGCCTAGGCCAACCGA-GAAAACGAGCGAGCGGATGG-GTGGG
257 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAA-GAGCGGGCGCA-GGCGT--G
* * * * * *
12309039 CGGGCACTACGTCGGCTAGAGAGGCAGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGT
318 CAGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
**
12309104 TTAGGCACATCTTCATATTTCTGCATGCCAAAACCATTTTTATGGCTTGTAAATTCATACAATGG
383 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
12309169 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTTG
448 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** * *
12309234 AAACTTTTTATGGTTCGGGATTTTTTTAAATTTTTTTTGAAGGTGTTTTGGCCCCAAACTCGGTA
513 AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * * *
12309299 GATGTGATCCTTTTGTTTTTGTTGGCATGCCACAAAAGAATTCAGCTAAAAACTCGAAGCGTACA
578 GACGTGATCCTTGTATTTTTTTTGGCATG-CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
12309364 AGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCTGACACTTTAATGGCTACTGGCAAGTAA
642 AGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGC-AGCAA
* *
12309429 ACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
706 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* *
12309494 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGTGCACACCCCCCGGCCCCCCC
771 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * * *
12309559 GACCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCCCGAC
836 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC
* * * * **
12309624 GAAGAAAGATGCGGCACCAGCACATGCTCGAGCCCAACAT-TAGCT-ACATAACCCTCGATCCGG
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT-GCTGCCGCAACCCTCGATCCGG
* *
12309687 TCCGATCATAGACTAGGATTGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
65 TCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * **
12309752 CAACCCATGAAATGAGTGTGCGGGACTCAGCCGGCCAGAGGGGCGAGATGCTTAAGCTGGGGATC
130 CAACCCACGAAACGAGCGTGCGGGCCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATC
*** * * **
12309817 AACCGGGTCCCCCTCTACGTGCTGTCGATCCTACTACTGCAACCCTCAGTCTGGTCCAATCTTAG
195 GGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCTGCAACCCTCAGTCTGGTCTGATCTTAG
*
12309882 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCAAGCAGGCGTGCTGGC
260 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGC--GCAGGCGTGCAGGC
*
12309947 ACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGG
323 ACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
12310012 TACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
388 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
12310077 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACT
453 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
** * * *
12310142 TTTTGCGGTTCGGGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGCCCCCAAACTTGGTAGATGT
518 TTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
12310207 GATCCTTGTA-TTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
583 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
12310271 TGTGACCATTTCAAAAAAGTGTCCTCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
648 TGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
12310336 AAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATA
713 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
12310401 TAAGGGCCAAGTACCAGCACCCATTGCACATCATGCGCGCACACCCCCCGGCCCCCCCGAACGTC
778 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* * * *
12310466 GGAACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGCTCTGGCGAT-GT-CGCCCGAC
843 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC-CCCGAC
* * *
12310523 GAAGAAAATTGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTG-TCTGG
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GATCCGG
* * * *
12310587 TCCAATCTTAGACTAGGAATGAACT-TCGTATGCTTATACTGAGAATGAACTCCATATGCCTAAG
65 TCCGATCTTAGACTAGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
12310651 TTAACCCACGAAACAAGCGTGC--G--T-A------C------GC----T---CAA-C-GGGGAT
129 TCAACCCACGAAACGAGCGTGCGGGCCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGGGGAT
* * ** *
12310690 CGGTCGGGTACCACTCTGTGTGCTACCGATCCTACTGCTGCAACCCTCAGTCTGGTCTGATCTTA
194 CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCTGCAACCCTCAGTCTGGTCTGATCTTA
* ** *
12310755 GGCTGGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAACCAGCAGGCGGGCG--GGCGGGCA
259 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--AG-A-GCGGGCGCAGGCGTGCA
* *
12310818 GGCACTAC-GCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTT
320 GGCACTACATC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
12310882 TAGGCACATCTTCCTATTTCTGGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
384 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
12310947 CCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGA
449 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * *
12311012 AACTTTTTGTGGTTCAGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAATTTGGAAG
514 AACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
12311077 ACGTGATCCTTGTCTTTTTTTTGGTAAGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
579 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
12311142 ATTTTGTGACCATTTGAAAAAAGCGTCCTCATTTTAGACACTTTAATGGCTAATGGCAGCAAACC
644 ATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
12311207 TGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
709 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
*
12311272 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCTCCCGAT
774 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * *
12311337 CGTCTGG-ACCCCAATGCCGCCGTTCAGGTTCTTCGGAGATGCTCCGACGATGGTGCCCCGAC
839 CGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC
* * * * *
12311399 GAAGAAAAATGTGACACCAGCCCATGCCCTAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
1 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGT
12311464 CCGATCTTAGACTAG
66 CCGATCTTAGACTAG
12311479 TGAACCCACG
Statistics
Matches: 4036, Mismatches: 461, Indels: 156
0.87 0.10 0.03
Matches are distributed among these distances:
873 1 0.00
874 356 0.09
875 276 0.07
876 87 0.02
877 2 0.00
878 6 0.00
879 1 0.00
883 2 0.00
889 1 0.00
891 2 0.00
892 190 0.05
893 63 0.02
894 3 0.00
895 3 0.00
896 27 0.01
897 245 0.06
898 6 0.00
899 47 0.01
900 266 0.07
901 101 0.03
902 607 0.15
903 630 0.16
904 341 0.08
905 656 0.16
906 117 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGT
CCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCG
GTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCTGCAACCCTCAGTCTGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGCAGGCGTGCAGGCACT
ACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGA
ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC
Found at i:12312980 original size:26 final size:26
Alignment explanation
Indices: 12312944--12312996 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12312934 GTTGACTTAG
*
12312944 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12312970 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12312996 G
1 G
12312997 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12316003 original size:904 final size:902
Alignment explanation
Indices: 12314204--12320429 Score: 7739
Period size: 902 Copynumber: 7.0 Consensus size: 902
12314194 AAATCCTGTT
* * * *
12314204 CCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCCGCTGAGCACCTGCACGCTCGTTTC
1 CCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* * *
12314269 GTGGGTTGACTTAGGCAAACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
66 GTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
12314334 AGATCGGACCAGATCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATT
131 AGATCGGACCGGACCGAGGGTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACATT
* * ** * * * * *
12314399 TTTCTTCGTCGGGGCACCATCGTTGGAGTATCATCGAAGAACCTGACTGGCGGC-TTTGGGTTC-
196 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCT
* * *
12314462 CGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCGGGTACTTGGCCCTT
261 GGA-GATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * **
12314527 ATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCAAAAAGAGCATTTGAGATT
324 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
12314591 TTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
389 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
12314656 AAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
454 AAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
12314721 CACGTCGACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCTTGAA-CGTAA
518 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCTGAACCGTAA
** * * * *
12314784 AAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACGTCACGTAAAGGCT
582 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * * *
12314849 TAAGGGAGCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGTACGCAGAAATATTAACATG
647 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* * * *
12314914 TGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATA
712 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * * * * *
12314979 GTGCCCGCCTGCCCGCCCGCCTGCTCGTTCCGTAGGTTGGCTTAGGCATACGAAGTTCATTTCT-
777 GTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTC
* * * * * *
12315043 AGTCTAAGATCT-GACCGGACCGGGGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGGGGGA
842 AGTCTAAGAT-TGGACCAGACCGAGGGTTGCAGTAGCAAGATCGGCAGCACGCAGAGGGGGA
* *
12315104 CCCGACCGATCCCCGGCTTGCGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
1 CCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* * *
12315169 GTGGGTTGACTTAGGTAAACGGAGTTCATTTCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
66 GTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * ** *** *
12315234 AGATCAGATCGGACCGAGGGTTGTGGCAGCACATTAAGGGCTCTCTCATGTGCTGGTGCCGCATT
131 AGATCGGACCGGACCGAGGGTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACATT
* * * * *
12315299 TTTCTTCGTCGAGGCATCATCATCGGAGCATCGTCGGAGAACCTGACCGACGACATTGTGGTTCT
196 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCT
* * *
12315364 GGAGATCGGGGGGACCGGGGGGGTGTGCGGACATGATGTGTGATGGGTGCTGGGACTTGGCCCTT
261 GGAGATCGGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * * * *
12315429 ATATCGGCCCCCTGTCCCTCATTAGAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATT
324 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * *
12315494 TTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGAAAACTTTTTTCAAATGGTCAC
389 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
12315559 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTGTGTGCATGCCAACAAAAATACAAGGAT
454 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TGTGCATGCCAACAAAAATACAAGGAT
*
12315624 CACGTCTACCAAGTTTGGGGCCAAAACGCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAA
518 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAA
** * * * *
12315689 AAGTTTCAAAAATTGTGAAAGATAGAAAACGAGTTGTCTTGCCATGAATCCTCACGTGAAGGCTT
583 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
12315754 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
648 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* *
12315819 GCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAA
713 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * *
12315884 TGCCCGCCCGTCCGTCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTC-
778 TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTCA
** * * * * * * *
12315948 GTCTGGGATTGGATCAGACCGAGGGTTACAGCAGCAAGATTGGTAACATGCAGAGGGGGA
843 GTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCAAGATCGGCAGCACGCAGAGGGGGA
* * * * * * * *
12316008 CCCGATCAATCCCCTGCTTGCGCATCCCGCCCTTCTGGCTC-GCTGAGCGCCCACACGCTCATTT
1 CCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGC-CGGCTGAGCACCCGCACGCTCGTTT
* * * ** *
12316072 CGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCCAAGCATACAAAGTTCCTTCCCAGTCT
65 CGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * * *
12316137 AAGATCGGATCAGAACCGAGGGTTGCGGCTGCACATGCTGGGCTCGGGTATGTGCTGGTGCCGCA
130 AAGATCGGA-CCGGACCGAGGGTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACA
* *
12316202 TTTTCCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTT
194 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTT
** *
12316267 CT-GACGAT--------CGGGGGGTGTGAACACATGATGTGCGATGGGTGCTGGTACTTGACCCT
259 CTGGA-GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
12316323 TATATTGGCCCCCTGTCCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
323 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * * *
12316388 TTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTGTGAAGTGGGGACACTTTTTTTAAATGGACA
388 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
12316453 CAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGA
453 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGA
** * ** *
12316517 TCACGTCTACCAAGTTTGGGGCCAAAAAACCTTCCGAAAAAATTTTAAAAAATCCCAAACCTTAA
517 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAA
* * * *
12316582 AAAGTATT-AAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAAGAAACTTCTCGTGAAAGC
582 AAAGT-TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
12316646 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCATAAAAATATGGAA
646 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC--AGAAATAT-GAA
* * * * *
12316710 GATGT-AC-AAACCCACCTACCACCCTATCGATCCATGGCTTGAGCATCCTG-CTCTCTGG-TGA
708 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* * * * * *
12316771 --AAGAG-CCG-CAGCCCGCCCG--CTCT-GTTTCATCGGTTGGCTTAGGCATACTGAGTTCCAT
773 CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT-CAT
* *
12316829 TCC-CAG-CTAAG-TCGGACC-GA-CGAGGTTTGCAGTAG-AAGATCGGCAGCACG-AGAGGGGG
837 TCCTCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCAAGATCGGCAGCACGCAGAGGGGG
12316887 A
902 A
* * * * * *
12316888 CCC-AGCGGAT--CCGGCTT-CTG-GTCCC-GCCCTCTGGCCGACTGATCCACCCGCATGCTCGT
1 CCCGA-CCGATCCCCGGCTTGC-GCATCCCACCCCTCTGGCCGGCTGA-GCACCCGCACGCTCGT
*
12316947 TTCGT-GGTTGACTTAAGCAT-CGG-GTT--TCTTCCAGTCTAAAGCATACGGA-TTCATTCCCA
63 TTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TTCCAGTCT-AAGCATACGGAGTTCATTCCCA
*
12317006 GATCTAAGATCGGACCGGACCGAGGG-T-TCGCAGCACATGT-TGGGCTCGGGC-TGTGCTGGTG
126 G-TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACAT-TCTGGGCTCGGGCATGTGCTGGTG
* * * * * *
12317067 CCACAATTTTCTTC-ACCGGGCA-CATC-TACGTAGCATCGCGGCCGGAAAACCTGA-CGGCG-C
189 CCACATTTTTCTTCGTCGGGGCACCATCGT-CGGAGCAT--C-GCCGGAGAACCTGACCGACGAC
* * *
12317127 ATTGGGCGTTCCGGCGATCAAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
250 ATTGGG-GTTCTGGAGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
12317192 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
313 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
12317257 CAATTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTT
378 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
12317322 CAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
443 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAA
* ** *
12317387 AATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCC-TTCCTAAAAATTTAAAAAAATCC
507 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCC
* *
12317451 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
572 TGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * * *
12317516 CGTGAAGGCTTAAGGTACGATTGTATGAATTCACAATCCATAAAAATGGCATTGGCACACAGAAA
637 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* *
12317581 TATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCT
702 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
12317646 GGCCGACGTAGT----GCCCGCCCGCCCGTCCGCTCGTTTCCTCGGTTGGCTTAGGCACACTGAG
767 GGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * *
12317707 TTCATACC-CAGTCTAAGATTGGACCAGATCGAGGGTTGCAATAGCAGGATCGACAGCACGTAGA
832 TTCATTCCTCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCAAGATCGGCAGCACGCAGA
*
12317771 GGCGGA
897 GGGGGA
* * * *
12317777 CCCG-CTCGATCCTCGGCTTGTGCATCCCACCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTT
1 CCCGAC-CGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
*
12317841 CGTGGGTTCACTTAGGCATACGGAGTTCA-TT-C---CT-AG--T-----G----------G---
65 CGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *** * * * *
12317880 AAGATTGGACCGGACTGAGGGTTACAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCATAT
130 AAGATCGGACCGGACCGAGGGTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACAT
* * *
12317945 TTTTC-TCTGCCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTT
195 TTTTCTTC-GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTT
* * * * *
12318009 CTGGCGATCGGGGGGCTGAGGGTGGTGTGCACACATGATGTGCGATGCGTGCTGGTACTTGGCCT
259 CTGGAGATCGGGGGGCCG-GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * * * *
12318074 TTATATTGGCCCCCTTTCCCTCATCAAACCTTGAGAACTGAGACCCACTTAAAGAGCATTTGAGA
322 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
12318139 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTC
387 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
12318204 ACAATATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATATAGGG
452 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGG
* * * *
12318269 ATCACGTCTACCAAGTTTGGGGCCAAAAATCC-TTCTGAAAAAATTTTGAAAAATCCCGAACCGC
516 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCTGAACCGT
*
12318333 AAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
580 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * *
12318398 CTTAAGCGACCATTGTATGAAATTATAATCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
645 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * *
12318463 TGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCA
710 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * *
12318528 TAGTACCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCCTAGGCATACGGAGTTCATTCC
775 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* *** ** * * * * * *
12318593 -CAGTATAAGATCAAACTGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCACAGGGGGA
840 TCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCAAGATCGGCAGCACGCAGAGGGGGA
* * * * * * * * * * *
12318655 CTCAACTGATCCTCGGCTTGTGCGTCCCGCCCCTCTAGCCGACTGATCACCCGCATGCTCGTTTC
1 CCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* *
12318720 ATGGGTTGACTTAGGCATACGGAGTTC-TTTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCT
66 GTGGGTTGACTTAGGCATACGGAGTTCATTT-CCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *
12318784 AAGATCAGACCGGACCAAGGGTTCTGGCAGCACATGT-TGGGCTTGGGCATGTGCTGGTGCCACA
130 AAGATCGGACCGGACCGAGGGTTGTGGCAGCACAT-TCTGGGCTCGGGCATGTGCTGGTGCCACA
** * * *
12318848 -TTTTCTTCACCGGGGCACCATCGTCGTAGCATCGCC-GACGAACCTGACCGGCGGCATTGGGGT
194 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA-GAACCTGACCGACGACATTGGGGT
** *
12318911 TC-CAACGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
258 TCTGGA-GATCG-GGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
12318975 CCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTCAAGAGCAATTAA
320 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
12319039 GATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGG
385 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
12319104 TCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATGTTTTTGTGCATGCCAAGAAAAATACAA
450 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAA
* *
12319169 AGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACC
514 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACC
*
12319233 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
578 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * **
12319298 GGCTTAAGGGACGATTGTATGAATTTACAATCCATAAAAATGGCATTGGCACATAGAAATATGAA
643 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
*
12319363 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGTCTGGCCGA
708 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* * * *
12319428 TGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACTGAGTTCATT
773 CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
12319493 -CTCAATCTAAGATTGGACCAGACTGAGGGTTGCAGTAGCAAGATCGACAGCACGTAGA-GGGGA
838 CCTCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCAAGATCGGCAGCACGCAGAGGGGGA
* * * * *
12319556 CCCGGCCGATCCTCGGCTTACGCATCCCACCCCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTC
1 CCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* * * * * * *
12319621 ATGGGTTGACTTGGGCATACGGAGTTCATTCCCAATCTAAGCATTCAGAGTTCACTCCCAGTCTA
66 GTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
12319686 AGATCGGACCAGATCAAGGGTTGTGCCAGCACATTCTAGGCTCGGGCATGTGCTGGTGCCACATT
131 AGATCGGACCGGACCGAGGGTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACATT
* * * * * *
12319751 CTTCTTCGGT-GGGGCACCATCG-CTGGAGCATTGCTGGGGAACTTGACCGACGACATTCGGGTT
196 TTTCTTC-GTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTT
* * *
12319814 CCGGCGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
259 CTGGAGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
12319879 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTTAGATT
324 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
12319944 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGAACACTTTTTTCAAATGGTCAC
389 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
12320009 AAAATCTTGTACATTTTGAGTTTTTAGCTGAATTGTTTGTGCATGCCAAAAAAAAATACAAGGAT
454 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCC-AACAAAAATACAAGGAT
* * *
12320074 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCTGAATCGTAAA
518 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAA
* ** * *
12320139 AAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTAAAGGCTT
583 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
12320204 AAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATACGAAGATGT
648 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * * * **
12320269 ACCTAAACCCACCTACCACTCTATCGATACACGGCTTGCG-ATCCCCGTCTTCACTGGCCGGTGT
713 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCCGTC-TCTCTGGCCGACGT
* * *
12320333 AGT----GCCCACCCGCCCGCCCG-TTGTGTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
776 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
* * *
12320393 -AGTCTAAGATTGGATCAGACCAAGGGTTGCGGTAGCA
841 CAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCA
12320430 CATGCTGGGC
Statistics
Matches: 4616, Mismatches: 566, Indels: 291
0.84 0.10 0.05
Matches are distributed among these distances:
868 11 0.00
869 32 0.01
870 34 0.01
871 73 0.02
872 41 0.01
873 291 0.06
874 242 0.05
875 5 0.00
876 25 0.01
877 29 0.01
878 191 0.04
879 384 0.08
880 66 0.01
881 23 0.00
882 12 0.00
883 17 0.00
884 41 0.01
885 39 0.01
886 13 0.00
887 14 0.00
888 22 0.00
889 19 0.00
890 2 0.00
891 10 0.00
892 24 0.01
893 37 0.01
894 214 0.05
895 214 0.05
896 14 0.00
897 65 0.01
898 17 0.00
900 294 0.06
901 566 0.12
902 661 0.14
903 302 0.07
904 463 0.10
905 109 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
CCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCGGACCGGACCGAGGGTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACATT
TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCT
GGAGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
GTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTCAGTC
TAAGATTGGACCAGACCGAGGGTTGCAGTAGCAAGATCGGCAGCACGCAGAGGGGGA
Found at i:12318763 original size:26 final size:26
Alignment explanation
Indices: 12318734--12318786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12318724 GTTGACTTAG
* *
12318734 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12318760 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12318786 G
1 G
12318787 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12321271 original size:26 final size:26
Alignment explanation
Indices: 12321241--12321293 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12321231 GTTGACTTAG
12321241 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12321267 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12321293 G
1 G
12321294 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12322177 original size:26 final size:26
Alignment explanation
Indices: 12322141--12322194 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
12322131 TGGGTTGACT
12322141 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12322167 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12322193 TA
1 TA
12322195 TGATCGAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:12322620 original size:901 final size:900
Alignment explanation
Indices: 12320374--12326616 Score: 8259
Period size: 903 Copynumber: 7.0 Consensus size: 900
12320364 GTTGGCTTAG
* * * **
12320374 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATCAGACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCAAGTCTAAGA-TCGATCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
12320439 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCATCATCCCCGGAGCATCACCGGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
12320504 ACCTGACCTG-CGGTATT-GGGTTCCGACGATCGGGGGGGGCGGGGGGGTGTGCGCACATGATGT
130 ACCTGACC-GACGGCATTGGGGTTCCGACGAT--TGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
12320567 GCGATGGGTGCCGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12320632 CACCCCTTAAAAAGCA-TTGAGATTTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTATGAAA
257 CACCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12320696 TGGGGACACTTTTTTCAAATGGTCACATAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
12320761 GTGCATGCCAACACAAATGCAAGGATAATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
12320826 AATTTGAAAAAATCCCGAATCATAAAAAGTTTGAAAAAT-AGTGAAAAATAGAAAACGAGTCGTC
451 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTC
*
12320890 TTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
12320955 CATTGGCATGCAG-AATATGAAGATGTGCCTATACCCACCTACCAACCTATCGATCCACGGCTTG
580 CATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
12321019 CGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCCCGCTCGTTTCGTCGGTTG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * ** * * *
12321076 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGATGCAGCAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGTAGGA
* * * * *
12321141 TTGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCTCATCCCGCCCTTCTGGCCAGCT
775 TCGACAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
12321206 GAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12321267 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCAAGTCTAAGATC-GATCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * *
12321332 CTGGGGCATATGCTGGTGTCGCATTTTTCTTCGTCGAGGCACCATCACCAGAGCATCACCGTAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
** * * *
12321397 ACCTGACCGGTGGCATTGGGGTTCCGGC-ATTGGGGGGCTGAGGGGGGGTGTGCGCAGATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGC---CGGGGGGTGTGCGCACATGATGT
* * * **
12321461 GTGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12321526 CAGCCCCTTAAAGAGCATTTTAGATTTTACAGGTTT-CTTGCCAGTAGGCATTAAAGTGTCTGGA
257 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAA
*
12321590 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTC
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
12321655 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACTCCTTTC-AAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
12321719 AAAGTTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
450 AAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
12321784 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
12321849 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
579 GCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12321914 ACGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTT
644 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * *
12321979 GGCTTAGGCAT-TGGAGTTCATTCCCAGCCTAAGATCGAACCAAATTGAGGGTTGCGGTAGCAGG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGTAGG
* ** * *
12322043 ATCGATAGCGCGCAGAGGGGGACCTGGCCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCCGGC
774 ATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
12322108 TGAACGCCCGGACGTTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12322170 GCATACGGAGTTCATTCCCAGTCTATGATCGAACAGGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGATCA-GACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
12322235 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAACATCGTCGGAGCATCGCTGGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
*
12322300 ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACTTGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
12322365 ATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA-AAGCTCACA
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-CTCACA
* *
12322429 CACCCTTAAAGAGCATTGGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 C-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12322494 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTC-AGTTTTTAGCTGAACTGTTTTA
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12322558 TGCATGTCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTGCATT-CAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAA
* * *
12322622 AATTTTAAAAAATCCTGAACTGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12322687 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12322752 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
12322817 GCATCCCGTCTCTCTGGTCGGCGTA------------ACGCCCGCCCGCTCGTTTCGTCGGTTGG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** *
12322870 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGTAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGTAGGAT
* * * *
12322935 CGACAGCATGCAGAGGGGGACCAGACCGATCCCCGGCTGGCGCATCCCGTCCCTCTGGCCGGCTG
776 CGACAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
12323000 AACGCCCGTA-G---G-CTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12323055 G-AT-C--AG---A--CC--G----AG--C--T------GAGGGTTGCGGCAACACATGCTGGGC
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGATCAGACCGAGGGTTGCGACAGCACATGCTGGGC
* ** * **
12323095 TC-AGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 TCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * *
12323159 ACCTGACCGACGGCATTGAGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGTACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGAT-TGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
12323224 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12323289 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
259 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12323354 GGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTAT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12323419 GCATGCCAATAAAAATACAAGGATCACGTCTACCAACTTTGCGGCCAAAACTCCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
12323484 TTTTAAAAAATCCCGAACCGCAAAAAGATTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
12323549 CCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCGATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
12323614 TGGCGTATAGAAATATGAAGATGTGCTTAAACCAACCTACCACCCTATCGATCCACGGCTTGCAC
583 TGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
12323679 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
12323744 TAGGCAAACAGAGTTCATTCCCCA-TCTAAGATCAAACCAGACTGAGGGTTGGGGCAGTAGGATC
713 TAGGCATACGGAGTTCATT-CCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGTAGGATC
* * * * * * *
12323808 GACAGCATGCAGAGGGGGACCCAGACGATCCCCAGCTTACGCATCCCGCCCCTTTGGTCGACTGA
777 GACAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
12323873 GCGCCCGTACACTCGTTTCGTGGGTTG----A-G-TTACGGATTTCATTCCCAGTCTAA
842 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12323926 GCATACAGAGTTCATTCCAAGTCTAAGATCGGATCGGACCAAGGGTTAC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCAAGTCTAAGATC-GATCAGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * * * * **
12323990 GCTTGGGCAAGTTCTGGTGCCACATTTTTCTTCGTCGGGGCATCATCGCCGGAGCATCACCAAAG
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAG
* * * *
12324055 AACCTGACCGACAGCATTGGAGTTCCGACGATTGGGGGGGCCAGGGGGTTTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
12324120 TGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCGATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12324185 ACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCCGTAGCCATTAAAGTATCTGAAAT
258 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12324250 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTCTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12324315 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTACTTGCGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
12324379 ATTTT-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12324443 GCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCGATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
12324508 TTGGCATATAGAAATATGAAGATGTGCTTAAACCAACCTACCACCCTATCGATCCACGGCTTGCA
582 TTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12324573 CATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGC
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
12324638 TTAGGCAAACAGAGTTCATTCCCCGTCTAAGATCAAACCAGACTGAAGGTTGGGGCAGTAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGTAGGATC
** * * ** * * *
12324703 GACAGCATGCAGAGGGGGACCTAGACGATCCCCAGCTTATGCATCCCGCCCTTTTGGCCGACTGA
777 GACAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
12324768 GCGCCCGCACACTCGTTTCGTGGGTTGAGTTAGGAATACGGATTTCATTCCCAGTCTAA
842 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12324827 GCATACAGAGTTCATTCCAAGTCTAAGATCGGATCGGACCGAGGGTTAC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCAAGTCTAAGATC-GATCAGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * * * *
12324891 GCTTGGGCAAGTTCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAAG
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAG
* * * *
12324956 AACCTGATCGACAGCATTGGAGTTCCGACGATTGGGGGGGCCGGGGGGGTTTGCGCACATGATGT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
12325021 GTGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCGATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
12325086 CACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCCGTAGCCATTAAAGTATCTGAAA
257 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12325151 TGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTCTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12325216 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTACTTGCGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
12325280 AATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
451 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * *
12325345 TGCCGTGAAACTTCCCGTGAAGGCTTAAGGGACCACTGTATGAACTTACAAGCCAAAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * *
12325410 ATTGGCAGGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCATGGCTTGC
581 ATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
12325475 GCATCCCATCTCTCTGGCCGACGTAAG-GCCCGCGCACCCGCTCGCCCGGTCGTTTCATCAGTTG
646 GCATCCCGTCTCTCTGGCCGGCGT-AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
12325539 GCGTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCGGTAGTAGG
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGGCAGTAGG
* * * * * * * *
12325603 ATTGACAGCACGCAAAGGGGGACCCGACCGATCCCCAGCTTACGGATCCCGCCTCTCTGGCCGGC
774 ATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
12325668 TGAGCGCCTGTACGCTCGTTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
12325730 GCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CTAGACCGAGCATTGCGACAGTAGATGCTGG
1 GCATACGGAGTTCATTCCAAGTCTAAGATC-GATC-AGACCGAGGGTTGCGACAGCACATGCTGG
*
12325794 GCTCGAGCATGTGCTGGTGCCGCATTTTT-TTCG-CTGGGGTACCAT---C---G--T---CGGA
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCACCGGA
* * * * ** * *
12325846 GAACCTGACTGGCGGCAATGGGGTTCCGACGATCGGGGGGTTGGGGGGGTGTGCACACATGTTGT
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGG-CCGGGGGGTGTGCGCACATGATGT
*
12325911 GCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
12325976 TACCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAAT
257 CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12326041 GGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * ** *
12326106 TGCATGCCAAAAAAAATACAACGATAACGTCTACC-AGTTTGGCACCAAAAATCCTTCCGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** * *
12326170 ATTTTAAAAAATCCCGAACCGAAAAAATTTTTGAAAATTATGAAAAATAGAAAACGAGTTGTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
12326235 ACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCG
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * **
12326300 TTGGCATGGAGAAATATGAGGATGTTTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
12326365 CATCCCATCTCTCTGGCCGGCGTAGTG--C-CCCGCCCGCCCTCCCGCTCATTCCGTCGGTTGGC
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* *
12326427 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACTGAGGGTTGTGGCAGTAGGGT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGGCAGTAGGAT
* * * *
12326491 CGACAGCACGCAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGGTTG
776 CGACAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
12326556 AGCGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
12326616 G
1 G
12326617 ATCAGACCGG
Statistics
Matches: 4781, Mismatches: 470, Indels: 205
0.88 0.09 0.04
Matches are distributed among these distances:
858 1 0.00
859 112 0.02
860 464 0.10
861 3 0.00
868 1 0.00
870 1 0.00
871 23 0.00
872 145 0.03
873 6 0.00
874 1 0.00
875 2 0.00
876 3 0.00
877 10 0.00
878 2 0.00
880 2 0.00
881 2 0.00
882 1 0.00
883 1 0.00
884 2 0.00
885 42 0.01
886 197 0.04
887 1 0.00
888 8 0.00
889 394 0.08
890 200 0.04
891 38 0.01
892 2 0.00
893 125 0.03
894 103 0.02
895 689 0.14
896 106 0.02
897 346 0.07
899 2 0.00
900 4 0.00
901 642 0.13
902 314 0.07
903 735 0.15
904 51 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCGATCAGACCGAGGGTTGCGACAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGTAGGATCGACA
GCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12324832 original size:26 final size:25
Alignment explanation
Indices: 12324803--12324860 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
12324793 TGAGTTAGGA
*
12324803 ATACGGATTTCATTCCCAGTCTAAG
1 ATACGGATTTCATTCCAAGTCTAAG
* *
12324828 CATACAGAGTTCATTCCAAGTCTAAG
1 -ATACGGATTTCATTCCAAGTCTAAG
12324854 AT-CGGAT
1 ATACGGAT
12324861 CGGACCGAGG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 3 0.11
25 2 0.07
26 22 0.81
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.29
Consensus pattern (25 bp):
ATACGGATTTCATTCCAAGTCTAAG
Found at i:12325740 original size:26 final size:26
Alignment explanation
Indices: 12325704--12325756 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12325694 GTTGACTTAG
12325704 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
12325730 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12325756 G
1 G
12325757 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12329904 original size:26 final size:26
Alignment explanation
Indices: 12329875--12329927 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12329865 GTTGACTTAG
*
12329875 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12329901 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12329927 G
1 G
12329928 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12330784 original size:26 final size:27
Alignment explanation
Indices: 12330746--12330796 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
12330736 GTTGACTTAG
12330746 GCATACAGGAGTTCATTCCCAGTCTAA
1 GCATACAGGAGTTCATTCCCAGTCTAA
*
12330773 GCATAC-GGAGTTCATTCCTAGTCT
1 GCATACAGGAGTTCATTCCCAGTCT
12330797 TAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (27 bp):
GCATACAGGAGTTCATTCCCAGTCTAA
Found at i:12331662 original size:26 final size:26
Alignment explanation
Indices: 12331632--12331684 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12331622 GTTGACTTAG
12331632 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
* *
12331658 GCATACGAAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
12331684 G
1 G
12331685 ATCGGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:12332037 original size:896 final size:891
Alignment explanation
Indices: 12328121--12333135 Score: 6552
Period size: 896 Copynumber: 5.6 Consensus size: 891
12328111 GTTGGCTTAG
* * * **
12328121 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCCGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTAGG
**
12328186 CTCGGGCATGTGTTGGTGCCGCA-TTTTCTTCGTCGGGGCACCA------A--T-GCCGGAGAAC
66 CTCGGGCATGTGTTGGTGCCAAATTTTTCTTCGTCGGGGCACCATCGCCGAGCTCGCCGGAGAAC
** * * * *
12328241 CTGGA-CGATGACATTTGGG-TTCCGACGATCGGGGGGGTCGGGTGGAGGGTGTGCGCATATGAT
131 CT-GACCGGCGGCATTGGGGTTTCAG-CGATC-GGGGGGTC-GG-GG-GGGTGTGC-CACATGAT
* **
12328304 GTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTCGAGAACT
189 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
12328369 CACACCCTCTTAAAGAGCATTTCAAATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGA
254 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
12328434 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTT
319 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
* * * * *
12328499 TTGTGCATGCGAACAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAGAAA-TCCTTCCGA
384 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCAA
* * *
12328563 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGTCA
448 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
* * * *
12328628 TCTTGCCAAGAAACTTCATGTGAAGGCTTAAGAGACCATTGTATCAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
12328693 GGCATTGGCATGCAGAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATGCACGGCT
578 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** *
12328757 TGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCTACCCG-CCCGCTCGTTTCGTCAGTTGGCTTA
643 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGACCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * ** * * *
12328821 GGCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGGCCAAGGGTTGCGATAGTAGGATTGGT
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGC
** * * *
12328886 AGCACACAGAGTGGGACCAGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCA
773 AG--CAGTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * * ** * *
12328951 CCCACACGCTCATTTCGTGGGTTGACTTAGGTATACAAAGTTCATTGCCAGTCTAC
836 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
12329007 GCATACGGAGTTCATT-CCAATCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTAGG
* ** * * * * *
12329071 CTCGGGCATGTGTCGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGTATCGTCGAAGA
66 CTCGGGCATGTGTTGGTGCCAAATTTTTCTTCGTCGGGGCACCATCG-CCGAG-CTCGCCGGAGA
*
12329136 ACCTGACCGGCGGCATTGGGG-TTCTGACGATCGGGGGGTCGGGGGGGGTGTGCGCACATGATGT
129 ACCTGACCGGCGGCATTGGGGTTTCAG-CGATCGGGGGGTC-GGGGGGGTGTGC-CACATGATGT
* * *
12329200 GCTAT-GGTGCTGGTACTTGGCCCTCATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12329264 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12329329 TGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAATT-TTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTGTTT
** * * * *
12329393 TAAGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCCAAA
385 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* ** * *
12329458 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTC
450 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
* * * *
12329523 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATCAATTTACAAGCCATAACAATGT
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
12329588 CATTGGCA-CCTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATTCACGGCTT
580 CATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12329652 GCGTATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCG-CCCGCGCGTTTCGTCGGTTGGCTTAG
644 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGACCCGCTCGTTTCGTCGGTTGGCTTAG
* *** ** *
12329716 GCATACGGAGTTCATTCCCAGTCTAAGGTCAGGTTGGACCGAGGGTTGTGGCAGTAGGATCGGCA
709 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCA
* * * * *
12329781 GCACGCAGAGGGGGACCCAGCCGATCCCCGGTTTGCACATCCCGCCCCTTTGGCCGGCTGAGCAC
774 GCA-G-TGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * *
12329846 ACGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
837 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12329901 GCATACGGATTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTTCGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTAGG
* *** * * *
12329966 CTTGGGCATGTGTTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCAAATTTTTCTTCGTCGGGGCACCATC-GCCGAGC-TCGCCGGAGA
* * *
12330031 GCCTGACCGACGGCATT---G----AG-G-T-------TC-----------CGAC--GATGTGCG
129 ACCTGACCGGCGGCATTGGGGTTTCAGCGATCGGGGGGTCGGGGGGGTGTGCCACATGATGTGCG
*
12330067 ATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
12330132 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
12330197 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTG
*
12330262 CATGCCAACATAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAA
389 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAA
* * * * *
12330327 -TTTAAAAAATCTCGAACCGCAAACAGTTTCAAAAATCCTGAAAAACAAAAAACGGGTCGTCTTG
453 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
* * *
12330391 ACATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
12330456 TGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCATATCGATCCATGGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
12330521 ATCTCGTCTCTCTAGCCGACATAGTGCCTATCCGCCTGCCTG-CCCGCTCATTTCGTCGGTTGGA
648 ATCCCGTCTCTCTGGCCGACGTAGTG-C---CCG-C--CC-GACCCGCTCGTTTCGTCGGTTGGC
* *
12330585 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATC
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATC
** * * *
12330650 -GCAGCACCCGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTAAG
770 GGCAGCA-GTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
12330714 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGGAGTTCATTCCCAGTCTAA
834 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTCTAA
* * * ** * ** *
12330773 GCATACGGAGTTCATTCCTAGTCTTAGATCAGACTGGA-CAGAGGGTTACGGTAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCA-AGGGTTGCGACAGCACATGCTAG
*
12330837 GCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGG---CA---CC-A--TCGCCGGAGAA
65 GCTCGGGCATGTGTTGGTGCCAAATTTTTCTTCGTCGGGGCACCATCGCCGAGCTCGCCGGAGAA
* * * *
12330893 ACTGACCGGCGGTATT-GGGTTTCCTGCGATCGGGAGGGTCGGGGGGGTGTGCGCACATCATGTG
130 CCTGACCGGCGGCATTGGGGTTT-CAGCGATCGGG-GGGTCGGGGGGGTGTGC-CACATGATGTG
*
12330957 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12331022 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12331087 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
* * ** * *
12331152 AGCATGCTAACAAAAATACAAGGATCACATCTACCAAGTTTGGAGCTAAAACTCCTTCCAAAAAA
387 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** * *
12331217 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
* * *
12331282 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATAGTATTAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12331347 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCT
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12331412 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-ACCCACTTGTTTCGTCAGTTGGCTTAGGCA
647 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGACCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
12331476 TACAGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTACAGCATCAGGATCGGCAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCA
* *
12331541 TGTAGAGGGGGACCCGGCTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
777 -GT-GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
* * *
12331606 TACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTACCAGTCTAA
840 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12331658 GCATACGAAGTTGATTCCCAGTCTAAGATCGGGCCAGACCAAGGGTTGCGACAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTAGG
* *
12331723 CTCGAGCATGTGTTGGTGCCAAAATTTTCTTCGTCGGGGCACCATCGCCAGAGCGTCGCCGGAGA
66 CTCGGGCATGTGTTGGTGCCAAATTTTTCTTCGTCGGGGCACCATCGCC-GAGC-TCGCCGGAGA
* *
12331788 ACCTGACCGGCGGCATTGGGGTTTCGGCGATCGAGGGGGTCGGGGGGGTGTGCACACATGATGTC
129 ACCTGACCGGCGGCATTGGGGTTTCAGCGATCG-GGGGGTCGGGGGGGTGTGC-CACATGATGTG
*
12331853 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
12331918 ACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTATAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
12331983 GGGGACACTTTTTTCAAATGGTCACAAAATAATGTACTCTTCGAGTTTTTAGCTGAATTGTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
* **
12332048 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
12332113 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
* *
12332178 GCCATGAAACTTCATGTGAAGGCTTAAGGGGCCA-TGATATGAATTTACAAGCCATAAAAATGGC
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-TATGAATTTACAAGCCATAAAAATGGC
* *
12332242 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
12332307 GCATCCCGTCTTTCTGGCC-AGTGTAGTGCCCGCCCGACCGCCCGCTCGTTTCGTCGGTTGGCTT
646 GCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGA---CCCGCTCGTTTCGTCGGTTGGCTT
* * * *
12332371 AGGCATACGGACTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATCGG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGG
* **
12332436 CAGCACGTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGATTGAGCA
772 CAGCA-GTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * *
12332501 CTCGCACGCTCGTTTCATGGGTCGACTTTGGCATACGGAGTTCATTCCCAGTCTAA
836 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12332557 GCGTACGAAGTTCATTCCCAGTCTAGGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTAGG
* ** * * * *
12332622 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCATCGGGGCACCGTCGCTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCAAATTTTTCTTCGTCGGGGCACCATCGC-CGAGC-TCGCCGGAGA
* * * * * *
12332687 ACCTGATCGGTGGCAATGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTTTGTG-CACATGATGTG
129 ACCTGACCGGCGGCATTGGGGTTTCAGCGATC-GGGGGGTCGGGGGG-GTGTGCCACATGATGTG
* * * * *
12332751 CGATTGGTGTTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAAGCTTGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12332816 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12332881 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATGTTTTT
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG-TTTT
* * * *
12332945 GTGCATGACAA-ACAAAATACAAGGATCATGCCTACCATGTTTGGGGGCCAAAACACCTTCCAAA
386 GTGCATGCCAACA-AAAATACAAGGATCATGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCAAA
* *
12333009 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
449 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
* * *
12333074 CTTGGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAACCATAAA
514 CTT-GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
12333136 CCCACCTACT
Statistics
Matches: 3645, Mismatches: 385, Indels: 184
0.86 0.09 0.04
Matches are distributed among these distances:
861 22 0.01
863 1 0.00
864 14 0.00
865 423 0.12
866 10 0.00
867 1 0.00
868 1 0.00
869 6 0.00
870 2 0.00
871 85 0.02
872 117 0.03
873 78 0.02
878 2 0.00
879 2 0.00
884 74 0.02
885 175 0.05
886 125 0.03
887 2 0.00
888 5 0.00
889 2 0.00
890 2 0.00
891 10 0.00
892 452 0.12
893 374 0.10
894 278 0.08
895 115 0.03
896 526 0.14
897 44 0.01
898 222 0.06
899 335 0.09
900 138 0.04
901 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTAGG
CTCGGGCATGTGTTGGTGCCAAATTTTTCTTCGTCGGGGCACCATCGCCGAGCTCGCCGGAGAAC
CTGACCGGCGGCATTGGGGTTTCAGCGATCGGGGGGTCGGGGGGGTGTGCCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCA
TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCAGTGA
GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12334570 original size:692 final size:690
Alignment explanation
Indices: 12332560--12334604 Score: 2693
Period size: 714 Copynumber: 2.9 Consensus size: 690
12332550 AGTCTAAGCG
* * * * * *
12332560 TACGAAGTTCATTCCCAGTCTAGGATCAGACCAGACCAAGGGTTGCGACAGCACATGCTAGGCTC
1 TACGGAGTTCATTCCCGGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCT-GGGTC
* * * * * * * *
12332625 GGGCATGTGTTGGTGTC-GCATTTTTCTTCATCGGGGCACCGTCGCTGGAGCATCGTCGGAGAAC
65 GGGCATGTGCTGGTGCCAGCATTTTTCTT-TTCGGGGCACCATCGCCGGAGCATTGCCGGAGAAT
* * * * * * * * *
12332689 CTGATCGGTGGCAATGGGG-TTCCAGCGATCGGGG-GGGCCGGGGGGTTTGTGCACATGATGTGC
129 CTGACCGGCGGCATTGGGGTTTCGA-CAATCGGGGAAGGCGGGGGGGTGTGCGCACATGATGTGC
* * * * * *
12332752 GATTGGTGTTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAAGCTTGAGAACTCACA
193 GATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
*
12332817 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12332882 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTAAATGTTTTTGT
* * * * * *
12332947 GCATGACAAACAAAATACAAGGATCATGCCTACCATGTTTGGGGGCCAAAACACCTTCCAAAAAA
388 GCATGCCAAA-AAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAAAA
* * *
12333012 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
451 ATTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
* * * *
12333077 GGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAACCATAAACCCACC
516 -GCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAA---A--
** * * * ** * * * **** *
12333142 TACTACCCTATCGATCCACGGTAGCAGGATCAATA-GCACGC-AGAGGGGGACCTGGCCGATCCC
575 -A-T-GGC-ATTG--GCAC-GTAGAAATATGAAGATGTAC-CTA-A-ACCCACCT-ACC-A-CCC
* ** * * *
12333205 CAGCTTGCGCATCCTGCCCCTCTGACCGGCAGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
627 TA---T-CG-ATCCACCCCCTCCGACCGACAGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTA
12333270 GGCA
687 GGCA
* * * * *
12333274 TACGGAGTTTATTCCTGGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCGGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG-TC
* * * *
12333339 GGGCATGTGCTGGTGCCA-CATTTTTCTTCTTCGAGGCACCATCGCCGAAACATTGCCAGAGAAT
65 GGGCATGTGCTGGTGCCAGCATTTTTCTT-TTCGGGGCACCATCGCCGGAGCATTGCCGGAGAAT
* * * *
12333403 CTGACTGGCGGTATTGGGGTTCCGACAATC-GGGAAGGCGGGGGGGTGTGCGCACATGAGGTGCG
129 CTGACCGGCGGCATTGGGGTTTCGACAATCGGGGAAGGCGGGGGGGTGTGCGCACATGATGTGCG
*
12333467 ATGGGTGATGGTACTTGGCCCTTATATTGGCCCCATATCTCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACAC
*
12333532 CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12333597 GGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTTGAGTTTTTAGCTAAATATTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTAAATGTTTTTGTG
* * * *
12333662 CATGCCAAAAAAAAATATAAGGGTCACGTCTGCCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
389 CATGCC--AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
12333727 TTTTTAAAAATCTCGAACCGTAAAAATTTTCAAAATTTATGAAAAATAGAAAACGAGTCGTCTTG
452 TTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
* * *
12333792 CCATGAAACTTCACGTAAAAGCTTGAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
12333857 TGGCACCCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACCCCCTCCGA
582 TGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACCCCCTCCGA
*
12333922 CCGACAGAGCACCCGCACGCTCGTTTCGTTGGTTAACTTAGGCA
647 CCGACAGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCA
* *
12333966 TACGGAGTTCATTCCCGGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCACATGCTGGGTCA
1 TACGGAGTTCATTCCCGGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGTCG
* *
12334031 GGCATGTGCTGGTG-CAGCATTTTTCTTTGTTGGGGCACCATCACCGGAGCATTGCCGGAGAATC
66 GGCATGTGCTGGTGCCAGCATTTTTCTTT-TCGGGGCACCATCGCCGGAGCATTGCCGGAGAATC
* * * *
12334095 GGACCGACGACATTGGGGTTTCGACAATCGGGGAAGGCGGGGGGGGTGTGCGCACATGATGTGCA
130 TGACCGGCGGCATTGGGGTTTCGACAATCGGGGAAGGC-GGGGGGGTGTGCGCACATGATGTGCG
*
12334160 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACAC
12334225 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12334290 GGACACTTTTTTCAAATGGTCAGAAAATCTTGTTCACTTCGAGTTTTTAACTAAATGTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTAAATGTTTTTGTG
*
12334355 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATT
389 CATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
12334420 TTTTAAAAATCTCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGGGTCGTCTTGC
453 TTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGC
* *
12334485 CATGAAACTTCGCGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
12334550 GGCATGTAGAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
583 GGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAC
12334605 GGCTTGCGCA
Statistics
Matches: 1177, Mismatches: 141, Indels: 48
0.86 0.10 0.04
Matches are distributed among these distances:
690 3 0.00
691 80 0.07
692 339 0.29
693 220 0.19
694 1 0.00
697 4 0.00
698 1 0.00
699 2 0.00
700 4 0.00
701 10 0.01
702 7 0.01
704 3 0.00
705 1 0.00
706 1 0.00
707 1 0.00
710 1 0.00
713 56 0.05
714 414 0.35
715 26 0.02
716 3 0.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (690 bp):
TACGGAGTTCATTCCCGGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGTCG
GGCATGTGCTGGTGCCAGCATTTTTCTTTTCGGGGCACCATCGCCGGAGCATTGCCGGAGAATCT
GACCGGCGGCATTGGGGTTTCGACAATCGGGGAAGGCGGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTAAATGTTTTTGTGCA
TGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
TAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACCCCCTCCGACCGA
CAGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCA
Found at i:12334951 original size:159 final size:158
Alignment explanation
Indices: 12334650--12335025 Score: 475
Period size: 159 Copynumber: 2.4 Consensus size: 158
12334640 CCCGGCCGCC
* * * * * * * *
12334650 CACCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGATTTCATTCTCAGTCTAAGATTAGA
1 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* *
12334715 TCGAATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGAGGGACCCGATCGATCCCCAACT
66 CCGAATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGAGGGACCAGATCGATCCCCAACT
** *
12334780 TGTGCATTCTGCCCCTCTGGCAGGCTAAG
131 TACGCATCCTG-CCCTCTGGCAGGCTAAG
12334809 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * ****
12334874 CCGGATTGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGAGAGGGACCTAG-TCGATCCTTGGC
66 CCGAATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGAGGGACC-AGATCGATCCCCAAC
* * *
12334938 TTACGCATCCTGCCCTTTGGCCGGCTGAG
130 TTACGCATCCTGCCCTCTGGCAGGCTAAG
* * * *
12334967 CGCCTGCACGGTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAG
1 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
12335026 CATACAGAGT
Statistics
Matches: 188, Mismatches: 28, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
158 69 0.37
159 118 0.63
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGAATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGAGGGACCAGATCGATCCCCAACT
TACGCATCCTGCCCTCTGGCAGGCTAAG
Found at i:12335025 original size:26 final size:26
Alignment explanation
Indices: 12334996--12335048 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12334986 TGGGTTGACT
*
12334996 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
12335022 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
12335048 T
1 T
12335049 CAAATCAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:12336777 original size:26 final size:26
Alignment explanation
Indices: 12336741--12336793 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12336731 GTTGACTTAG
*
12336741 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12336767 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12336793 G
1 G
12336794 ATCGCACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12337660 original size:26 final size:26
Alignment explanation
Indices: 12337631--12337702 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
12337621 GTTGACTTAG
* *
12337631 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12337657 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12337683 GCATACGGAGTTCATTCCCA
1 GCATACGGAGTTCATTCCCA
12337703 TCAGACCGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12338556 original size:26 final size:26
Alignment explanation
Indices: 12338520--12338570 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
12338510 TTGACTTAGG
12338520 CATACAGAGTTCATTCCCAGTCTAAA
1 CATACAGAGTTCATTCCCAGTCTAAA
12338546 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
12338571 GATCGGACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:12339243 original size:903 final size:902
Alignment explanation
Indices: 12335865--12339585 Score: 4719
Period size: 903 Copynumber: 4.2 Consensus size: 902
12335855 GTTGACTTAG
* * * * * *
12335865 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCAAGGGTTGTGACAGCAGATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
12335930 CTCGGGCATGTGCTGGT-CCGTATTTTTCTTCACCGTGGCACCATCGTCGGAGTATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCT-GGAG
* * *
12335993 AACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTG-G-GCATCCATGAT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGTGCGCA--CATGAT
*
12336056 GTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
** * * *
12336121 TGCACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGA
* * *
12336186 AATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTAGACTTCGAATTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
12336251 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAATTGCTTTCGA
388 TTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCAA
* * **
12336315 ATATATTTTAAAAAATCCCGAACC-CTAAAAAGTTTTAAAAATAGTGAAAAATAGAAAACGAGTC
452 AAAAATTTTAAAAAATCCCGAACCTC-AAAAAGTTTCGAAAATAGTGAAAAATAGAAAACGAGTC
* *
12336379 ATCTTGCCATTAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
516 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* ** * *
12336444 TGGCATTGGCACATAGAAATATGAAGCTGTGCCTAAACCCACTACCACGTTATTGATTCACGGCT
581 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTACCACCCTATCGATCCACGGCT
* *
12336509 TGCGCATCCCGTCTCTCTGGCTGGA-GTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTC-G
646 TGCGCATCCCATCTCTCTGG-TCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCAG
* * *
12336572 ATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGGTTACGACAGC
710 -TTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGACAGC
* * * * * *
12336637 AGGATCGGTAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTCCGCATCCCGCCCCTCTGGCC
773 AGGATCGGCAACACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGACC
* * * * *
12336702 AGCTGAGCGTCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
838 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
12336767 GCATACAGAGTTCATTCCCAGTCTAAGATCGCACCGGACCGAGGGCTT-CAACAGCA-ATGCTAG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG-TTGCGACAGCACATGCTGG
* *
12336830 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-TCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCT-GGA
* * * * *
12336894 GAACCTGACCGACGGCATTTGGGTTTCGGCAATCG-GGGGG-TG-GGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATG
* * *
12336956 TGTGATTGGTGCTGGTAATTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
12337020 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCGGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAA
* * * * * *
12337085 ATAGGCACACTTTTTTCAAATGGTCACAAATTCTTGTAAACTTTGAGTTTTTAGCTCAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
12337150 TGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCTAAAAATCCTTCCAAAA
389 TGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* * * *
12337215 AAATTTTAAAAAATCCCGAA-CTGCAAAAAGTTTC-AGAAATCGTGAAAAATAAAAAATGAGTCG
454 AAATTTTAAAAAATCCCGAACCT-CAAAAAGTTTCGA-AAATAGTGAAAAATAGAAAACGAGTCA
* *
12337278 TCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** *
12337343 GGCATTTGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCC-ATCGATCCACGGCT
582 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACGGCT
*** * * *
12337407 TGCGCATCCTGCCTCTCTGGCCGACGTAGT----ACCCG----TCCGCCCGCTCGTTTCGTCAGT
646 TGCGCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCAGT
* * * * * *
12337464 TGGCTTAGGCGTACGAAGTTCATTCCTAGTTTAAGATCGGATTGGGCTGAGGGTTGCGACAGCAG
711 TGGCTTAGGCATACG-AGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGACAGCAG
* *
12337529 GATAGGCAACACACAGAGGGGGACCCGATCGATCCCCGGCTTGCCCATCCCGCCCCTCT-AGCCG
775 GATCGGCAACACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGA-CCG
* * * *
12337593 GTTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
12337657 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATCAGACCGAGGGTTGCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C--CAGACCGAGGGTTGCGAC
* * * * *
12337722 AGCACATGCTTGGCTCGGGCATGCGCTGGTGCCGTATTTTTCTTCGCCTGGGCACCATCGCCAGA
53 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGA
* * * * * * * ** *
12337787 GCATCGCCGGAGAACCTAACCGGCAGCGTTAGGGTTTCGGTGATC-AGGGGGGCCGGGGGGGGTG
118 GCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGA-GGGGGCC-GAGGGGGTG
* *
12337851 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAA
181 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
12337916 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG-C-C
246 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAC
*
12337979 ---A---T-T-AAA--GTG-C-C------C-----G-----AAATCTTGTACAC-TCTGAGTTTT
311 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTT
* **
12338015 TAGCTGAATTTTTTTGTGCATA-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGA
375 TAGCTGAATTTTTTTGTGCA-AGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** * *
12338079 AAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATAGTGAAAAAT
439 AAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTCGAAAATAGTGAAAAAT
*
12338144 AGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
504 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
12338209 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTACCACCCTAT
569 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTACCACCCTAT
* * *
12338274 CGATTCACGGCTTGCGCATCTCATCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCACCCGTCCCGC
634 CGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCGCCCACCCG-CCCGC
* * *
12338339 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATGGGACTAGA-TCGAG
698 TCGTTTCGTCAGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACTAGACT-GAG
* * * * * * *
12338403 GGTTGCCACAGCAGGATTGGCAGCACACAGAGAGGGACCCGATTGATCCCCTGCTTGTGCATCCC
761 GGTTGCGACAGCAGGATCGGCAACACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC
** * *
12338468 GCTACTCTGACCGGCTGAGCGCCCGCACGCTCGTTTTGTGGCTTGACTTAGGCATACAGAGTTCA
826 GCCCCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
12338533 TTCCCAGTCTAA
891 TTCCCAGTCTAA
* * *
12338545 ACATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACACGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * ** * *
12338610 CTCGAGCATGTGCAGGTGCCGCATTTTTCTTCGTCGGGGTGCCATCGCCGGAGCAACGCTAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCTGGAGA
12338675 ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATGTG
**
12338740 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
12338805 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
* *
12338870 GGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGCTTTTAAG-TGAATTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTT
** * *
12338934 GTGCAAGCC-AATGAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCTAAAAA
390 GTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * *
12338998 AATTTTAAAAAATCCTGAACCTCAAAAAGTTTCGAAAATAATGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCTCAAAAAGTTTCGAAAATAGTGAAAAATAGAAAACGAGTCATCT
* *
12339063 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATGAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12339128 ATTGGCACATAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCAATCCACGGCTTGC
585 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACGGCTTGC
* * * * *
12339193 GCATCCCATCTCTTTGGTCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCTTCAGTTCG
649 GCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCAGTTGG
* * * **
12339258 CTTAGGCTTACGAGGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGTAGCAGGAT
714 CTTAGGCATACGA-GTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGACAGCAGGAT
* * * * * * *
12339323 CGGTAACACGCAGAGGGGGACCCGACCGATCTCAGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
778 CGGCAACACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGACCGGCTG
*
12339388 AGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
* * * * * *
12339448 GCATAC-GAAGTTCATTCCCAATCTAAGATCGAACCGGATCAAGGGTTGCGGCAGCACATGCTGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGG
* * * * * * **
12339512 GCTCAGGCAAGTGTTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCTCCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCTGGAG
12339577 AACCTGACC
130 AACCTGACC
12339586 AAGAATGAAC
Statistics
Matches: 2436, Mismatches: 292, Indels: 181
0.84 0.10 0.06
Matches are distributed among these distances:
874 130 0.05
875 113 0.05
876 2 0.00
877 1 0.00
878 9 0.00
879 277 0.11
880 2 0.00
881 1 0.00
882 1 0.00
883 5 0.00
884 5 0.00
885 1 0.00
886 3 0.00
887 7 0.00
888 208 0.09
889 4 0.00
890 211 0.09
891 3 0.00
892 1 0.00
893 1 0.00
894 5 0.00
895 1 0.00
896 1 0.00
897 6 0.00
898 382 0.16
899 60 0.02
900 2 0.00
901 34 0.01
902 118 0.05
903 515 0.21
904 188 0.08
905 13 0.01
907 1 0.00
908 50 0.02
909 75 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCTGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
ATTTTAAAAAATCCCGAACCTCAAAAAGTTTCGAAAATAGTGAAAAATAGAAAACGAGTCATCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTACCACCCTATCGATCCACGGCTTGCGC
ATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCAGTTGGCT
TAGGCATACGAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGACAGCAGGATCGG
CAACACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGACCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:12339458 original size:26 final size:26
Alignment explanation
Indices: 12339422--12339474 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12339412 GTTGACTTAG
*
12339422 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12339448 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12339474 G
1 G
12339475 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:12341756 original size:26 final size:26
Alignment explanation
Indices: 12341705--12341757 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12341695 CCAGTCCGAT
* *
12341705 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
12341731 CTTAGACTGGGAATGAAC-TCTATATG
1 CTTAGACTGGGAATGAACTTC-ATATG
12341757 C
1 C
12341758 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:12342620 original size:26 final size:26
Alignment explanation
Indices: 12342591--12342640 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12342581 CCGATCCGAT
* *
12342591 CTTAGGCTGGGAATGAACTCCGTACG
1 CTTAGACTAGGAATGAACTCCGTACG
12342617 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
12342641 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACG
Found at i:12343507 original size:26 final size:26
Alignment explanation
Indices: 12343478--12343530 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12343468 CCAGTCCGAT
12343478 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12343504 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12343530 C
1 C
12343531 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12344411 original size:26 final size:26
Alignment explanation
Indices: 12344382--12344434 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12344372 CTGGTCCGAT
*
12344382 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACCGGGAATCAACTCCGTATG
* *
12344408 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATCAACTCCGTATG
12344434 C
1 C
12344435 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATCAACTCCGTATG
Found at i:12346176 original size:26 final size:26
Alignment explanation
Indices: 12346147--12346199 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12346137 CCGATCTGAT
*
12346147 CTTAGAGTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12346173 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12346199 C
1 C
12346200 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12348856 original size:26 final size:26
Alignment explanation
Indices: 12348820--12348870 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12348810 AGACCGATCT
*
12348820 TAGACTGGGAATGAACTTCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
12348846 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
12348871 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:12349893 original size:902 final size:897
Alignment explanation
Indices: 12340519--12362748 Score: 27067
Period size: 902 Copynumber: 25.1 Consensus size: 897
12340509 GACATGATAC
* * *
12340519 TTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
12340584 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCTATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
12340648 ACATCATGTGCGCACACCACCCCCCCGGCCCCCCCGATCATCGAAACCCCAATGCCGTCGGTCAG
131 ACATCATGTGCG--CA-CA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
** * * *
12340713 GTTCTCCGATGATGCTCCAGCGATGGTGCCTCGACGAAGAAAAATGCAGCACCAGCACATGCCCG
192 GTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * * *
12340778 AGCCCAGCATGTGCTACCGTAACCCTCGCTCTGGTCCAATCTTATACTGGGAATGAACTCCGTAT
257 AGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
12340843 GCTTAGAGTGGGAATTAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGCCGCTCAG
321 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
12340908 CCGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGTCGATC
386 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATC
* * *
12340973 CTACTGCCCCAACCCTCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
451 CTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
12341037 AACCGACGAAATGAGC-AGGCGGGTGGGTGGGAACTACGTCGGCCAGAGAGACGGGATACGCAAG
515 AACCGACGAAACGAGCGA-GC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * * * * **
12341101 CCGCGGATCGATAGGGTCGTAGGTAGGTTTAGGCACATATTAATATTTCTACGTGCCAATGATAT
578 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * *
12341166 TTTCATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAG-TTCATGGCAACACT
643 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
12341230 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTG
708 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
12341295 GGAAGGGGTTTTAGCGCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
773 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
12341360 CATTCAGCTAAAAACTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCA
838 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
12341420 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTGAA-GGGAT
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGT
* * *
12341484 GTGAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCA
65 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** * *
12341549 CACATCATGTGCAAACACCCCCCGGCCCCCCCGATCATCGGAACCCCAAGGCCG-C---CA-G-T
130 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * * * * *
12341608 -T--AG-G-TTCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGACCCCAACACATGCCCGAGG
195 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
12341668 CCAGCATGTGCTGCCGGAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTTCGTATGCT
260 CCAGCATGTGCTGCCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
** * * * *
12341733 TAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCATGCAGGTGCTTAGCCG
324 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
12341798 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAGCTGGGTCCCCCTCTACGTGCTGTCAATCCTG
389 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTG
** ** * * *
12341863 CTGTTGCAACCCTCAATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACC
454 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
12341928 GACGAAACGAGCGGGCAGGCGGGTGGGCACTGCGCCGGCCAGAGAGACGAGATGTGCAAGCCGTG
519 GACGAAACGAGCGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*** *
12341993 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATCCCATTTTTA
583 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
12342058 TGGCTCGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCG
648 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
12342123 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGTTTCGAGATTTTTTAAAA-TTTTTCAGAAG
713 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * * * *
12342187 GCA-TTTTTGACCC-AACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATA-T
778 G-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
12342249 CAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTG-AAAAAGTGT-CCCA
842 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
12342302 -TTCAGACAC-TTAATGGTCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
1 TTTCAGACACTTTAATGG-CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
12342365 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
65 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
12342430 CACATCATGTGCGCACACCCCCCTCGGCCCCTCCGATCGTCGGAACCCCAATGCTGCCGATCAGC
130 CACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * *
12342495 TTCTCCGACGA---T---GC--TGGTGCCCCGACAAAGAAAACTGCGGCACCAGCACATGCTCGA
193 TTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* *
12342552 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGGCTGGGAATGAACTCCGTACG
258 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
12342617 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGTATGCGGGCGTTCAGC
322 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
12342682 TGGCCAGAGGTGCGGGATGCGTAAGCTGGGGATCGG-TCGGGTCCCCCTCTGCGTGCTACCAATC
387 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTACGTGCTGCCGATC
* * * *
12342746 CTGCTACCACAACCCTCAGTCTTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
451 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
12342811 ACCGACGAAACGAGCGGGCTGGCGGGC-GGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCC
516 ACCGACGAAACGAGCGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
12342875 GTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTACATGCCAATGCCATTT
580 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
**
12342940 TTATATCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
645 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** ** *
12343005 TTGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGG
710 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
12343070 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTATTGGCTTGCACAAACAAA
775 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
12343135 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
840 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
12343193 TTTCAGACACTTTAATGGCTATTGGCAGCAAACATATAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * ** * *
12343258 TGAGTTCTTGAGGATTGAAAAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGT
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * * * *
12343323 ACATCATGTGAGCACACCCCCCGGCCCCCTCGATCATCGAAACCCCAATACCGCCAGTCAAGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* **
12343388 T-C--CGA--------CGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
196 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
***
12343442 CAGCATGTGCTGGTACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
261 CAGCATGTGCTGCCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
** * *
12343507 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGTGCTCAACCGG
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * ** *
12343572 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTGCCCCTCTATGTGCTATCGATCCTCC
390 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * * * ** *
12343637 TGCTGCAACCCTCGGTCTGGTCCGATCTTAGAGTAGGAATCAACTTCGTACACCTAAGTCAACCG
455 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* *
12343702 ACGAAACGAGCGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCACAAGCC
520 ACGAAACGAGCGA----GC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
12343767 GTGGATCGATATGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTTTTCATGCCAATGCCATTT
580 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
12343832 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACAAC
645 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * **
12343897 TCATTTTCTACTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAA
710 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * *
12343962 AAGGCGTTTTGGACCCAATCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
775 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
12344027 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCG
840 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
12344085 TTTGAGACACTTTAATGGCTACTGGCAGCAAACTTGTCAAATCTCAAATGCTTTTTAAAGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * *
12344150 TGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGCAACAGCACCCATCAC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** *
12344215 ACATCATGTGCGCA-AACCCCCGGCCCCCCCGATCACCAGAACCCCAATGCCGTCGGTCAGGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * * * * *
12344279 TCCGGTGATGCTCTGGTGATGGTGCCTCGTCGTAGAAAAATGTGACACCAGCACATGCCCGAGCC
196 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * * *
12344344 CAACATGTGCTACCACATAACCCTTGGACTGGTCCGATCTTAGACTGGGAATCAACTCCGTATGC
261 CAGCATGTGCTGCCGC--AACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
12344409 TTAGACCGGGAATGAACTCTGTATGCCTAAGTCAACACATGAAATGAGCGAGCGGGCGCTCAGCC
323 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * *
12344474 GACCAAATGGGCAGGATGCGCAAGCCGAGGATCGG-TCGGGT--CTCTCTACGTTCTGTCGATCC
388 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTACGTGCTGCCGATCC
* * * ** * *
12344536 TACTACCCCAACCCTTTGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
452 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
12344601 TC-ACGAAACGAGC--G-GACGGGCGGGCACTACGCCGG-TAGAGAGACGGGACGTGCAAGCCGT
517 CCGACGAAACGAGCGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
**
12344661 GGATCGATAGGGTGGTAGGCCGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
582 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
12344726 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
647 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** ** * * * * * *
12344791 ATTTTTTATTTTTCACAATTTTCCAAACTTTTTTCGATTCAGGATTTTTTACAATTTTTTTGAAA
712 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * *
12344856 GGATTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATT
777 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
12344921 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
842 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
12344977 TTTCAGACACTTTAATGGCTACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
12345042 TGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *** * *
12345107 ACATCATGTGCGCACACCCCCCGG-TCCCCCGATCCAGGGAACCACAATGCCGCCGGTCAGGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * ** ** *
12345171 TCCGGCGATACTCCAGCGATGGCACCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCAAGCC
196 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
12345236 CAGCATGTGCTGCCGCAA-CC-C--T-CG---G-TC-----C---G-AT---CT--G-AT-CTTA
261 CAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
12345276 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGGGCGTGCGCTCAGCCGGC
326 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
12345341 TAGAGGGGTGGGATGTGCAAGCCGGGGATC-GATCGGGTCCCCCTCTGCTTGCTGCCGATCCTGC
391 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * ** *
12345405 TGCCACAACCCTCAGT-TCGGTCAAATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACC
455 TGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
12345469 GACGAAACGAGC-AGGCGGAAGGGCGAGCAGGCACTACGCCGGCTAGAGAGACGGGATACGCAAG
519 GACGAAACGAGCGA-GCGG-CGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
** *
12345533 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCACGTGCCAATGCCAT
578 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
12345598 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACATGAAGTTTCATGGCAAGACG
643 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
12345663 ACTCGTTTTTTATTTTTCATAATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTC
708 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
*** * * *
12345728 GGAAGGAGTTTTTGG-AAAAAAGTTGGTAGACGTGATCCATGTATTATTGTTGGCATGCACAAAA
773 GGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
12345792 AAATTCAGCTAAAAACTCGAATTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCG
837 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
12345852 TTTCAGACACTTTAATAGCTACT-GCAGCAAACCTGTAAAATCTCAAATGC-CTCTTAAAGGGGC
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT-TTAAGGGGGT
* * *
12345915 GAGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCATCG
65 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** * * *
12345980 CACATCATGTGCGCACACCCCAGGGCCCCCCCGATCGTCGAAACCTCAATGCCGCCGGTCAGGTT
130 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * *
12346045 CTCCGGCGATGCTCCGACGATGCTGTCCCAACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
195 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * * *
12346110 CTAGCATGTGCTACCGTAACCCTCGATCCGATCTGATCTTAGAGTAGGAATGAACTCCGTATGCT
260 CCAGCATGTGCTGCCGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
12346175 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCCCGAAACGGGCGTGCAGGCTCTCAGCCA
324 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * ** * * *
12346240 GCCAAAGGGGCGGGATGCACAAGCCGGGGATCGG-TCGAGTCCTTCTTTGCGTGTTGCCGATCCT
389 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTACGTGCTGCCGATCCT
** * ** * *
12346304 GCTGCCATAATCCTCAATCTGGTCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAT
453 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** *
12346369 CGATGAAACGAGCGGGC-GC-GGCGGGCACTACGCTAGCCAGAGAGACGGGATGCACAAGCCGTG
518 CGACGAAACGAGCGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
12346432 GATCGATAGGGTGGTAGGTGGGTTTAGGCCCATCTTCATATTTTTGCGTGCCAATGCCATTTTTA
583 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
12346497 TGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACATGAAGTTTCATGGCAACACGACTCG
648 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** * * *
12346562 TTTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTTGGAAG
713 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * * *
12346627 GAGTTTTTGCCCCAAAACTTGGTAGACGAGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATT
778 GAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
12346692 AAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
842 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
12346748 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
12346813 TGAGTTCCCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * **
12346877 ACATCATGTGTGCACA-CCCCCTG-CCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * *
12346940 TCCGACGATGCTCCGACAATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
196 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * **
12347005 CAGCATGTGCTGGCACAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTACACTT
261 CAGCATGTGCTGCCGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * * * *
12347070 AGACCGGGAATTAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGAGATCAGTCGG
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * * * * *
12347135 -TAAAGGGGCGGGATGCACAAGCTGGGGATCGTC-GGGTCCCCTTTTGCCTGCTACCGATCCTGC
390 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * ** * *
12347198 TACCGCAACCCTCAGTCCGACCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCG
455 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* *
12347263 ACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGGGAGACGGGATGCGCAAGCC
520 ACGAAACGA----GCGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * *
12347328 GTGGATCGGTAGGGTGGTCGGTGGGTTTAGGCACATCTTTATATTTATGCGTGCCAATGCCATTT
580 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
12347393 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGAC
645 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
12347458 TCGTTTTTCTATTTTTCACGA-TTTTCAAA-ATTTTGGGGTTTGGGATTTTTTAAAAATTTTTTC
710 TCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTC
* * *
12347521 GGAAGTAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAA
773 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
12347586 AATTCAGCTAAAAAACTCGAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCA
838 AATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
12347647 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
12347712 TGAGTTCTCGAGGTTTGCTGAGGGATAGGGGGCCAATATAAGGGTCAAGTACTAGCACCCATCAC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
12347777 ACATCATGTCCGCACACCCCTCCGGCCCACCCGATCATCGCAACCCCAATGCCGTCGGTCAGGTT
131 ACATCATGTGCGCACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * ** *
12347842 CTCCGACGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGT
195 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
12347907 CCAGCATGTGCTGTCGCAA-CC-C--TCAGT-C---C--AG--T-----T----T--G-AT-CTT
260 CCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
12347947 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
12348012 CCAGAGGGGCGGAATGCGTAAGACGGGGATCGG-TCGGGTCCCCCTCTGCGTGCTGCTGATCCTA
390 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTACGTGCTGCCGATCCTG
* * * **
12348076 CTACTGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
454 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
12348141 GACGAAACGAGCGGGCGGGCGGGCGAGCACTACGCTGGCCAGAGAGACGAGATGCGCAAGCCGTG
519 GACGAAACGAGCGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
12348206 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTT
583 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTT
* * *
12348271 ATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGATGACTC
647 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
12348336 ATTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAA
712 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * *
12348401 GGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-TCATTTTTTTTGGCAAGCACAAAAAAAT
777 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAAT
* **
12348465 TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCA
841 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
12348522 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
12348587 TGAGTTCTCGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
12348652 ACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTT
131 ACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * *
12348716 CTCCGGCAATGCTCCGACGATGGTGCCACGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
195 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *** * * * *
12348781 CCAGCATGTACTATTGCAACCCTCGGTTCAGACCGATCTTAGACTGGGAATGAACTTCGTATGCA
260 CCAGCATGTGCTGCCGCAACCCTCGG-TCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
12348846 TAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAAAACGAGCGTGTGGGTGCTCAGCTG
324 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
12348911 GCCAGAGGGGCGGGATGCGTAAGCCGAGAATC-GATCGGGTCCCCCTCTATGTGTTGCTGATCCT
389 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTACGTGCTGCCGATCCT
** * * ** *
12348975 ATTGTCACAACCCTCGGTCTAATCCT-ATCTTAGACTGGGAATGAACTCCGTAGGCCTAAGCCAA
453 GCTGCCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
12349039 CCGACGAAACGAGCGAGCGGATGGGCAGGGGGATGCTACGTCGGCCAGAGAGACGGGATGCGCAA
517 CCGACGAAACGAGCGAGCGG-CGGGC--GGGCA--CTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
12349104 GCCGTGGATCAATAGGGTGTTAGGTGGGTTTAGGGACATCTTCATATTTTTGCATGTCAATGCCA
577 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
12349169 TTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGTAAGAC
642 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
12349234 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTT-AAATTTTTT
707 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * *
12349298 -GGAAGGAGTTTTGGCCCCAAGCTTGGTAGATGTGATCGTTGTATTTTTGTTGGCATGCACAAAA
772 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
12349362 AAATTCAGCTAAAAACTTGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
837 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
12349423 TTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
12349488 TGAGTTCTCGAGGTTTGCTGAGGGATAGGGGGCCAATATAAGGGTCAAGTACTAGCACCCATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
12349553 ACATCATGTCCGCACACCACCCCGGCCCCCCCGATCATCGCAACCCCAAAGCCGTCAGTCAGGTT
131 ACATCATGTGCGCACACC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * *
12349618 CTCCGACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
195 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * ** * *
12349683 CCAGCATGGGCTACCGCAACCCTTGGTCCAGTTTGATCTTAGACTGGGAATGAACTCCATAAGCT
260 CCAGCATGTGCTGCCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
*
12349748 TAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
324 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
*** * *
12349813 GCCAGAGGGGCGGGATGCGCAAGATAGGGATCGGCTGGGTCCCCCTCTACGTGCTGCTGATCCTA
389 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTG
* ** * * * *
12349878 CTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCTTATACCTAAGCCAATC
454 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
12349943 GACGGAACGAGC--G-GGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGTAAGCCATGG
519 GACGAAACGAGCGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
***
12350005 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTTA
584 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTA
* * *
12350070 TGGCTTGTAATTTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCG
648 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
12350135 TTTTCTATTTTTCATAATTTTTGAAACTTTGTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAG
713 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* *
12350200 GAGTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTC
778 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
12350265 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
843 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
12350320 TTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
12350385 TGAGTTCTCGAGGTTTGATGAGCGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * ***
12350450 ACATCATGTGCGCACA---------CCCTCCGATCGTTGGAACCCCAATGCAACCGGTCAGGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * ** ** * ** *
12350506 TCCGGTGATGTTCCGGTAATGGCACCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
196 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* ** * * *
12350571 CAGCATGTGCTGTCGCAATGCTCGGTCCAATCCAATCTTAGACTGGGAATGAACTCCATATGCTT
261 CAGCATGTGCTGCCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
12350636 AGACTAGGAATGAACTCCGTACGCTTAAGTCAACCCACGAAATGAGCGTGC-GGCGCTCAGCCGG
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * *** * *
12350700 CCAGAGGGACGGGATGCGAAAGTCGGGGATCGACCAAGTCTCCCTCTGCGTGCTGCCGATCCT-C
390 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * *
12350764 TACCGTAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATACCTAA-CCTAACC
455 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACC
* * * * * *
12350828 AATGAAACGAG-G-G-GGCGGGCGGGCACTACACCGACTAGAGAGACAGGATGCGCAAGCCGTGG
519 GACGAAACGAGCGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
12350890 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
584 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
12350955 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
649 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
12351020 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTCTTAAAATTTTTTCAGAAGG
714 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * * *
12351085 CGTTTCGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCA
779 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
12351150 GC-AAGAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTATCCCCA
844 GCTAA-AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * * * * *
12351204 TATCAGATACTTTAATGGCTACCGACAACAAACCTGCAAAATCTCAAATGCTTTTTAAGAGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
12351269 TGAGTTCTTGAGGTTTAATGAGGGATAGGGGGCCAA-ATAA-GGCTCAAGTACCAGCAACCATAG
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC-CAAGTACCAGCACCCATCG
* * * * *
12351332 CACATCTTGTGCGCACA---------CCCCCCGATCGGCGGAACCCTAATGTCGTCGATCAGG-T
130 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* *
12351387 -T----C--T-CT--GACGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCACATGCCCGAG
195 CTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAG
*
12351441 CCCAGCATGTGCTGCCACAACCCT---T--G---G----T---CT-GG--T---CT--G-AT-CT
259 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
12351481 TAGACTGGGAATGAACTCCGTATGCTTAAGT-----TA--AAACGAGCGTGCGGGCGCTCAGCCG
324 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
12351539 GTCAGAGGGGCGGGATGCGCAAGTCGGGGATAGGAC-AGGTCCCCCTCTGCTTGCTACCGAT-CT
389 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-CTGGGTCCCCCTCTACGTGCTGCCGATCCT
* * *
12351602 CGCTGCCGCAACCCTCGAT-TCGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
453 -GCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
12351666 ACCAACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCTGGCCAGAGAAACGGGATACGCAAGCT
516 ACCGACGAAACGAGCGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
12351731 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
580 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
12351796 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGAC
645 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * **
12351861 TCATTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTT-GGGATTTGTTAAAA-TTTTTCAA
710 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
12351924 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTT-TTGGCAAGCACAACAAAA
775 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
12351988 TTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
840 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
12352046 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * *
12352111 TGAGTTCTCCAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGCACCAGCAACCATTGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
12352176 ACATCATGAGCGCACACCCCCCGG-CCCTCCGATCATCGGAACCCAAATGCCGTCGGTTAGGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * * * * * *
12352240 TCTGACGATGATCCGACGATGGTGCCCTGACGAAGAAAAATACGGCACTAGTACATGCCCGAACC
196 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
12352305 CCGCATGTGTTGCCACAA-CCT---T---T--G------GTCT--G---G---TCCG-AT-CTTA
261 CAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
12352345 GACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAG-TGGA
326 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG-
* * * ** * * * *
12352409 CCAGAGGGGCGGGATTCGTAAGCCGGGGATCGACCAGGTCCCCCTAT-CATGCTGTCGATCTTGC
390 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * *
12352473 TACCGCAACCCTCGGTCTGGTTTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAACCA
455 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * *
12352538 ACAAAATGAGCGGGCCGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGTAAGTCGTGG
520 ACGAAACGAGCGAG-CGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
** * *
12352603 ATCGATAGGGTGGTAGGTGGGTTTAGGCACAAATTCATATTTCTACGTGCCAATGCCATTTTTAT
584 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
12352668 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCATGGCAAGACGACTTGT
649 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
12352733 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTCTTAAAATTTTTTCAGAAGG
714 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * * * *
12352798 CGTTTGGGCCCCAAACTTGGAAGATGTGATCCTTGTATTTTTGTTGGCACGCATAAAAAAATTCA
779 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
12352863 GCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
844 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
12352917 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
12352982 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGT
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
12353047 GCATCATGTGCGCACACCCCCCTGG-CCCCCCGATCGTCGGAACCCCAATACCGCCGGTCAAGTT
131 ACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
** * * *
12353111 CT-C--CG--G-T-----GATGGTGCCTTGGCGAAGAAAAATGTGGCACTAGCACATGCCCGAGC
195 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
12353165 CCAACATGTGCTACTGC-AGCC-C--T-CG---G-TC-----C-------G-A-TCCG-AT-CTT
260 CCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
12353205 AGA-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * ** * * * * *
12353269 CCAGAGGGCCGAGATGCGCAAGCAGGGGATCCACCGGGTCCCCTTTTGCATGCTGCCGATCCTGC
390 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * *
12353334 AGCTGC-ATCATCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
455 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
12353398 -CTGAAACGAACGA---GCGGGCGGGCACTACACCAGCCAGAGAGACGGGATGCACAAGCCGTGG
520 AC-GAAACGAGCGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * **
12353459 ATCGATAGGGTGGTAGGTTGGTTTTGTCTTATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
584 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
12353524 GGCTTGTAAATTCATACAATGGTCCCGTAAGCGTTTCATGTGAAGTTTCATGGCAAGACGACTCG
649 GGCTTGTAAATTCATACAATGGTCCCTTAAGC-CTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * *
12353589 TTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAG
713 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* *
12353654 GCATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATT
778 G-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
12353719 CAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
842 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
12353775 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
**
12353840 TGAGTTCTCGAGGTTTGATGAGGGATAGGGAACCAATATAAGGGCCAAGTACCAGCACCCATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
** * * * *
12353905 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCACCAGAACCCCAATGTCGTCGATTAGGTT
131 ACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* *
12353970 CT-C--CG--G-T-----GATGGTGCCCC-AGTGAAGAAAAATACGGCACCAGCACATGCCCGAG
195 CTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * ** * *
12354023 CCCAGCATGTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTACGAATTGAATTTCGTATG
259 CCCAGCATGTGCTGCCGCAACCCTCGGTC-CGTCCGATCTTAGACTGGGAA-TGAACTCCGTATG
* * *
12354088 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCAGGTGCTCAGC
322 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
12354153 CGGCCAGAGGGGCGGGATGCGCAAGACAAGGATCAG-TCGGGTCCCCCTCTGCTTGCTGCTGATC
387 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTACGTGCTGCCGATC
* * * * *
12354217 CTGCTGTCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCA
451 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
12354282 ACCGACGGAATGAGCGGGCGGATAGACGGGCGGGCGCTACACCCGCCAGAGAGATGGGATTCGCA
516 ACCGACGAAACGAGCGAGC-G---G-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
12354347 AGCCATGGATCAATAGGGTGG-AGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCC
576 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
12354411 ATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGA
641 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * **
12354476 TGACTCTTTTTCTATTTTTAACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTT
706 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTT
* * *
12354541 TTCGGAAGGATTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
770 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
12354606 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
835 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
12354669 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
12354734 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * **
12354799 ACATCATGTGGGCACACCCCCCGGCCCCCCCGATCGTAGAAACGGCAATGCCGTC-GTCAGGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
** * * *
12354863 TCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGACACCAACACATGCCCGAGCC
196 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * ** *
12354928 TAGCATGTGCTGCCGCAACCCTCAGTTTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTT
261 CAGCATGTGCTGCCGCAACCCTC-GGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
12354993 AGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGG
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * *
12355058 CCAGAGGGGTGGGATGCGTAAGCCGGGGATCGGCCGAGTGCCCCTCTACGTGCTGCCGATCCTGC
390 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * * * * *
12355123 TACCACCACCCTTGGTCCGATCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCG
455 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
12355188 ACGAAACGAGCGAGCGGGCGGGCGAGCACTACGCCGGCTAGAGAGACGGGATGTGCAAGCTGTGG
520 ACGAAACGAGCGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
12355253 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTCTGCATGCCAATGCCATTTTTAT
584 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
12355318 GGCTTGTAAAATCATACAATGGTCCCTTAAGCCGTCACGTTAAGTTTCATGGCAAGACGACTCGT
649 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * ** * *
12355383 TTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAACG
714 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
** *
12355448 A-TTTTCGTTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTC
779 AGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* **
12355512 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGAAAATTTGAAAAAAGTGTCCCCA
843 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
12355567 TTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
12355632 TGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCTC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *** *
12355697 ACATCATGTGCGCATACCCCCCGGCCCTGACGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * *
12355762 TCCGGTGATGCTCTGGCGATGGTACCCCGACGAAGAAAAATGCGGCACCAGCATATGCCCGAGCC
196 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* ** * * * * ** *
12355827 TAGCACATGCGGTCGTAACCTTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTT
261 CAGCATGTGCTGCCGCAACCCTCGG-TCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
12355892 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGTTGAGCCGG
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * ** *
12355957 CCAGAGGGGTGGGATGCGCAAGCCGGGGATTGGCCGAGTCCCCCTCTGCAAGCTGCCGATTCTGC
390 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGC
** * * * ** *
12356022 TGTTGTAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCG
455 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * **
12356087 ACGAAACGAGCGGGTGGGCGGACGGGCAGGCGGGCACTATGCCGGCCAAAGAGACAAGATGCGCA
520 ACGAAACGAGC----GAGCGG-C--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
12356152 AGCCGCGGATCAATAGGGTGGTAGGTGGGTGTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
576 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
12356217 ATTTTTATGGATTGTAAATTCATATAATGGTCCCTTAAGCTTTCACATGAAGTTTCATGGCAAGA
641 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** ** * * * *
12356282 CGACTCGTTTTCTATTTTTCATGATTTTCAAAAAATTTTACGATTCAGGATTTTTTAAATTTTTT
706 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* *
12356347 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGGTTGGTATGCACAAA
771 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
12356412 ACAATTCAGCTAAAAAC-CTAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCACA
836 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
12356473 TTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT-TGCAAATGCTCTTTAAGCGGGT
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-CAAATGCTCTTTAAGGGGGT
* *
12356537 GTCAGTTCTCGAGG-TT--T----GAT-----G--------A--G----G-----GCACCCATCT
65 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * *
12356571 CACATCATGTGTGCAGACCCCTCGCCCCCCCCGATCGTCGGAACCCCAATGACGCCGGTCAGGTT
130 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* *
12356636 CTCCGGCGATGGTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
195 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
12356701 CCAGCATGTGCTACCGGAACCCTCGGTCCGATCCGGTCTTAGACTGGGAATGAACTCCGTAGGCT
260 CCAGCATGTGCTGCCGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
12356766 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAGCCG
324 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * * *
12356831 GACAGAGTTGCGGGATGAGCAAGCCGGGGATCGG-TCGAGTCCCCCTCTACGTGCTACCGATCCT
389 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTACGTGCTGCCGATCCT
* * *
12356895 GCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAT
453 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
12356960 TGACGAAACGAGC--G-GGTGGGCGGGCTCTACGTCGGCCAGAGAGACGGGATGCGTAAGTCGTG
518 CGACGAAACGAGCGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * * * * * * *
12357022 TATCGATAGGGTGGTAGCTGGGTTTATGTACATGTTTATATTTCTACGTACCAATGCCATTTTTA
583 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
12357087 TGGTTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
648 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * ** * *
12357152 TTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTTAGGATTTTTTAAAGTTTTTTTGGAAG
713 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
12357217 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
778 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
12357282 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCA
843 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
12357337 TTTCAGACACTTTTATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTT
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
12357402 TGAGTTCTCAAGGTTTGAAGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
12357467 ACATCATGTGCGAACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
** * * * *
12357532 TCCAACGATGCTCCGACGATGCTGCCCCGACGAAGAAAAATGCGGCACCAGCACATTCCCGAGCA
196 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
12357597 CAGGATGTGCTGCCACAA-CC-C-GT--G---G----T---CT--G---G---TCAG-AT-CTTA
261 CAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
12357637 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGAGCTCAGCCGGC
326 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * ** *** * * * *
12357702 CAAAGGGGCGGGATGCACAAGCTGGGGATCAACCAAGTCCCCCTCTGCATGCTGTCGATTCTGCT
391 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGCT
* *** * * **
12357767 ACCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATAGA
456 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
12357832 CGAAATGAGCG-GCTGGGCGAGCGGTCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCT
521 CGAAACGAGCGAGC--GGC--G-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
12357896 GTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
580 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
12357961 TAATGGCTTGTAAATTCATACAAAGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
645 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** * *
12358026 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAGTTTTTTCGG
710 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* *
12358091 AAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTCTGTTGGCATGCACAAAAAAA
775 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
12358156 TTTAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCA
840 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
12358214 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
12358279 TGAGTTCTCAAGGTTTGATGAGTGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
12358344 ACATCATGTGTGCACACGCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
131 ACATCATGTGCGCACAC-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * * *
12358409 CTCCGACGATGCTCCGGAGATGGTGCCCCGATGAAGAAAAATACGGCACCAGAAAATGCCCGAGC
195 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
12358474 CCAGCATGTGCTGCCGTAA--------CCGTCAG-TC-----C---G---G---TCCG-ATG-TT
260 CCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
12358514 AGATTGGGAATGAACTTCATATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGCGCTCAGCCGG
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * *
12358579 CCAGAGGGGCGGGATGTGCAAGCCAGGGATCGACTGGGT-CCCC-CT---T--TG-C-A---TGC
390 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * * ** *
12358632 TACCGCAACCCTCGGTCCGGTAC-AATCTTAGGCTGGGAACGAACTAAGTATGCCTAAGCCAATC
455 TGCCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * *
12358696 GACAAAACGAACTGGCGGGTGGACGGACGGGCACTACGTCGGCTAGAGAGACGGAATGCACAAGC
519 GACGAAACG-A---GCGAGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
12358761 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTTTGCATGCCAATGCTATT
579 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
12358826 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
644 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * *
12358891 CTCATTTTCTATTTTTC-TCGATTTTTGAAACTTTTTACAGTTCGAGATTCTTTAAAATTTTTTT
709 CTCGTTTTCTATTTTTCAT-GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * * * * * *
12358955 GAAAGGATTTTTGACCCTAAACTTGGTAAATGTGATCCTTGTATTTCTGTTGGCATGCACAAAAA
773 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
12359020 AATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
838 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
12359080 TTTCAGACTCTTTAATTGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
12359144 TGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * **
12359209 ACATCATGTGCGCACACCCCCCGGCCCCCTCGA-CCTCCGGAACCCCAATGGCACCGGTCAGGTT
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT-CGGAACCCCAATGCCGTCGGTCAGGTT
* ** * * *
12359273 CTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACAAACACATGCCCGAGC
195 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
** * *
12359338 CCAGCACCTGCTGCCGTAACCCT--G---G---G-TC-----C---G---G---TCCG-AT-CAT
260 CCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
12359378 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGGGCTCAGCCGG
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * *
12359443 CCAAAGGGGTGGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTC-AGCGTGCTGCCAATCCTA
390 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTA-CGTGCTGCCGATCCTG
* *
12359507 CTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAATTCCTTATGCCTAAGCCAATC
454 CTGCCGCAACCCTCGGT-C--T--G------G--T----CTG-A-T-C---T---T------A--
* * * *
12359572 GACTGGGAATGAACTCTGTATGCATAAGCCAACCGACAAAACGAGCGGGCGGGCGGACGGGCGGG
485 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGAGCGG-CGGGCGGG
* * *
12359637 CACTACGTCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
545 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
12359702 GCACATCTTCATATCTT-TGCATGCCAATGCTATTTTTATGGCTTGTAAATTCACACAAAGGTCC
610 GCACATCTTCATAT-TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
12359766 CTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAA
674 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
** * * *
12359831 CTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTCTGGAAATATTTTTGACCCTAAACTTGGTAGA
739 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
12359895 CATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
803 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
12359960 TTTCGTGACCATTTGAAAAAAGTGTCCCCA
868 TTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
12359990 TTTCAGACACTTTAATTGCTACTGGTAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
12360055 TGAGTTCTTGAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGT
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
12360120 ACATCATGTGCGCACACCCCCCGGCCCACCCGATCGTCGGAACCCCAACGTCGTCAGTCAGGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* ** * ** *
12360185 TCTGGCGATGCTCCGGTTATGGTGCCTCGTTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
196 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* *
12360250 CAGCATGTGCTGCCGCAACTCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTT
261 CAGCATGTGCTGCCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* ** * *
12360315 AGACTGGGAATGAGCTCTATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGG
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * **
12360380 CTAGAGGGGCAGGATGCACAAGCCGGGGATCGGCT-GGTCCCCCTCCACGTCCTATCGATCCTGC
390 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGC
** * * *
12360444 TAACGCAACCCTCGATTTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCG
455 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
12360509 ACGAAACGAGC-AGGCGAGCGGGCAGACAGGCACTATGCCAGCCAGAGAGATGTGATGCGCAAGT
520 ACGAAACGAGCGA-GCG-GCGGGC-G---GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
12360573 CGTGGATTGATAGGTTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
579 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
12360638 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
644 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
12360703 CTCATTTTCTATTTTTCACGATTTTTGAAATTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCG
709 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
12360768 GAAGGATTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAA
774 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
12360833 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTTAAGAAAGTGTCCCCA
839 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
12360892 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
12360957 TGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
12361022 ACATCATGTGCACACACCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGATTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
** * ** * * *
12361087 TCCGATGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGCGACACC-GACACATGCTCGTGC
196 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG-CACATGCCCGAGC
* *
12361151 CCAGCATGTACTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
260 CCAGCATGTGCTGCCGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
12361216 TAGACTGGGAATGAACTTCGTATGCCTAAGTCATCCCATGAAACGAGCGTGCGGGTGCTCAGCCG
324 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * *
12361281 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATCCTG
389 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTG
* * * * *
12361346 CTGCCACAACCCTCGGTCTGGGCTGATCTTAGACTGGGAATGAACTCCATACGTCTAAGCCAACC
454 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
12361411 GATG-AA--A-TGA---GCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCTGTGG
519 GACGAAACGAGCGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
12361469 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
584 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
**
12361534 GGCTTGTAAATTCATACAATTTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
649 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * *
12361599 TTTCTATTTTTCAAGATTATCGAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTCTTCGAAAGG
714 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
12361664 AGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAGTTCA
779 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
12361728 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
844 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
12361782 TTTTAGACACTTTACTGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGAGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
12361847 TGAGTTCTCGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * ** * * *
12361912 ACATCATATGCGTACACCCCCCGGCCCCCCCGGTCACCGAAACCCCAATGCAGTCGGTTAGGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * *
12361977 TCCGGTGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAACC
196 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* *
12362042 CAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCATATGCTT
261 CAGCATGTGCTGCCGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * *
12362107 AGACTAGGAATGAGCTCCGTATACCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAACCGA
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
** ** * * *
12362172 ATAGAGGGGCGGGATGCATAAGCCAGGGATCGGC-CGGTCCCCCTCCACGTGCTGCCGATCCTGC
390 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGC
** * * *
12362236 TAACGCAACCCTCAGTTTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCG
455 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
12362301 ACGAAACGAGCGGGCAGGCGGGCAGGCAGGCACTACGCCAGCCAGAGAGACGTGATGCGCAAGTC
520 ACGAAACGAGCGAGC-GGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
12362366 GTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
580 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
12362431 TTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGAC
645 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** * **
12362496 TCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGGGGTTCAAGATTTTTTAAAATTTTTTCGG
710 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* *
12362561 AAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAA
775 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
12362626 TTCAGCTACAAACTCGAAGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCTCA
840 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
12362683 TTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAAGGGGT
1 TTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
12362747 GT
65 GT
12362749 TTGAAATGGG
Statistics
Matches: 18600, Mismatches: 2236, Indels: 986
0.85 0.10 0.05
Matches are distributed among these distances:
839 13 0.00
840 63 0.00
841 64 0.00
842 159 0.01
843 87 0.00
844 16 0.00
845 202 0.01
846 31 0.00
847 2 0.00
850 2 0.00
851 30 0.00
852 1 0.00
853 2 0.00
855 2 0.00
856 130 0.01
857 88 0.00
858 252 0.01
859 99 0.01
860 157 0.01
861 93 0.00
862 101 0.01
863 284 0.02
864 414 0.02
865 95 0.01
866 511 0.03
867 17 0.00
868 291 0.02
869 266 0.01
870 56 0.00
871 232 0.01
872 98 0.01
873 7 0.00
874 228 0.01
875 815 0.04
876 464 0.02
877 555 0.03
878 238 0.01
879 99 0.01
880 15 0.00
881 131 0.01
882 15 0.00
883 105 0.01
884 347 0.02
885 401 0.02
886 417 0.02
887 1050 0.06
888 158 0.01
889 104 0.01
890 498 0.03
891 314 0.02
892 1212 0.07
893 106 0.01
894 843 0.05
895 439 0.02
896 156 0.01
897 335 0.02
898 467 0.03
899 804 0.04
900 259 0.01
901 893 0.05
902 1477 0.08
903 402 0.02
904 222 0.01
905 4 0.00
906 111 0.01
907 273 0.01
908 5 0.00
909 6 0.00
910 424 0.02
911 195 0.01
912 2 0.00
913 2 0.00
916 1 0.00
917 2 0.00
918 1 0.00
919 2 0.00
920 1 0.00
921 2 0.00
923 1 0.00
925 1 0.00
929 1 0.00
931 1 0.00
932 1 0.00
933 1 0.00
935 4 0.00
936 36 0.00
937 89 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
CAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGCT
GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
Found at i:12350636 original size:26 final size:26
Alignment explanation
Indices: 12350607--12350662 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
12350597 CCAATCCAAT
* *
12350607 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATACG
*
12350633 CTTAGACTAGGAATGAACTCCGTACG
1 CTTAGACTAGGAATGAACTCCATACG
12350659 CTTA
1 CTTA
12350663 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATACG
Found at i:12354101 original size:27 final size:26
Alignment explanation
Indices: 12354061--12354114 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12354051 CTGGTCTGAT
* *
12354061 CTTAGACTACGAATTGAATTTCGTATG
1 CTTAGACTACGAA-TGAACTCCGTATG
**
12354088 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
12354114 C
1 C
12354115 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:12354993 original size:26 final size:26
Alignment explanation
Indices: 12354964--12355016 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12354954 TTGGTCCGAT
12354964 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
12354990 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12355016 C
1 C
12355017 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:12355899 original size:26 final size:26
Alignment explanation
Indices: 12355863--12355915 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12355853 TTGGTCCGAT
12355863 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
12355889 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
12355915 C
1 C
12355916 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12356767 original size:26 final size:26
Alignment explanation
Indices: 12356738--12356787 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
12356728 CCGATCCGGT
12356738 CTTAGACTGGGAATGAACTCCGTAGG
1 CTTAGACTGGGAATGAACTCCGTAGG
12356764 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
12356788 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAGG
Found at i:12359581 original size:34 final size:34
Alignment explanation
Indices: 12359538--12359608 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 34
12359528 TCCGATCTTA
* * *
12359538 GACTGGGAATGAATTCCT-TATGCCTAAGCCAATC
1 GACTGGGAATGAACT-CTGTATGCATAAGCCAACC
12359572 GACTGGGAATGAACTCTGTATGCATAAGCCAACC
1 GACTGGGAATGAACTCTGTATGCATAAGCCAACC
12359606 GAC
1 GAC
12359609 AAAACGAGCG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
33 2 0.06
34 31 0.94
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (34 bp):
GACTGGGAATGAACTCTGTATGCATAAGCCAACC
Found at i:12360337 original size:26 final size:26
Alignment explanation
Indices: 12360286--12360338 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12360276 CCGGTCCGAT
* *
12360286 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
12360312 CTTAGACTGGGAATGAGCTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
12360338 C
1 C
12360339 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12361217 original size:26 final size:26
Alignment explanation
Indices: 12361188--12361240 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12361178 CCGATCCGAT
12361188 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12361214 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12361240 C
1 C
12361241 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12363339 original size:26 final size:26
Alignment explanation
Indices: 12363309--12363361 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12363299 GTTGACTTAG
12363309 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
12363335 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12363361 G
1 G
12363362 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12364211 original size:26 final size:26
Alignment explanation
Indices: 12364182--12364234 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12364172 GTTGACTTAG
12364182 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
*
12364208 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12364234 G
1 G
12364235 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12365121 original size:26 final size:26
Alignment explanation
Indices: 12365085--12365134 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
12365075 TGACTTAGGC
12365085 ATACGGAGTTCATTCCCAGTCTAACT
1 ATACGGAGTTCATTCCCAGTCTAACT
12365111 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
12365135 GATCAGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAACT
Found at i:12365220 original size:901 final size:890
Alignment explanation
Indices: 12363479--12366450 Score: 4174
Period size: 901 Copynumber: 3.3 Consensus size: 890
12363469 GATCGACGGG
** *
12363479 GGGGGTGTGCGCACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
12363544 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
12363609 TAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
12363674 AGCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
196 AGTTTTTA-CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
12363739 GGCCAAAACTCCATCCGAAAAAATTGTAAAAAATC-CGGAACCGCAAAAAGTTTCAAAAATCGTG
260 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATC-TG
*
12363803 AAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
323 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AGGCTTAAGGGACCATTGTATGA
** *
12363868 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGACGTGCCTAAACCCACCTACC
387 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
12363933 ACCCTATCGATCCATGGCTTGCGCATCCCGTTTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCC
452 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CT-GCCC
* * **
12363998 GT-CGTCTTGTTTCGTCGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAA
513 GTCCG-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGG
* * * ** * * * *
12364062 ACTAAGGTTGCGGTAGTAGGATCGGTAGCATGCAGAGGGTGACCCGGCCGATTCCCGACCTGCGC
576 ACGAGGGTTGCGATAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCG-CCTGCGC
* * * * * *
12364127 ATCCCGCCCTCTGGTCGGCTGAGCGCTTGTACGCTCATTTTGTGGGTTGACTTAGGCATACGAAG
640 ATCCCCCCCTCTGGCCGGTTGAGCGCTCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAG
* *
12364192 TTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGATGGTTGC
705 TTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* *
12364257 GGCAGCACATGCTGGGCTCGGGCACGTGCTGGTGCCCCATTTTTCTTCGTCGGGGCACCATCGCC
770 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGCC
* * * * ** *
12364322 GGAGCATCGCCGGAGAAACTAATTGACGGTATTAAGGTTTCGACGATCGGGGGGGGTCA
834 GGAGCATCGTCGGAGAACCTAA-CGACGGCATTGGGGTTTCGGCGATCGGGGGGGG-CA
* * * *
12364381 GGGGGTGTGCACACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* **
12364446 -CGATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTCAAGATTTTACAGGTTTGCTGCCA
66 TC-ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
12364510 ATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
12364575 GAGTTTTT-CATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
195 GAGTTTTTAC-TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
12364639 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATG
259 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC-TG
12364704 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGA
323 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA-GGCTTAAGGGACCATTGTATGA
12364769 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
387 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
12364834 GCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCC
452 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCC
* * ** *
12364899 GCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGATTGGATCGA
517 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGA-CGA
* * *
12364964 GGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGAGGACCCGACCGATCCCCAGCTTGCGCAT
580 GGGTTGCGATAGTAGGATCGACAGCACGCAGA-GGG-GGACCCGACCGATCCCC-GCCTGCGCAT
* *
12365029 CCCACCCCT-TAGGCCGGTTGAGCGCTCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAG
642 CCC-CCCCTCT-GGCCGGTTGAGCGCTCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAG
* * *
12365093 TTCATTCCCAGTCTAA-CTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTA
705 TTCATTCCCAATCTAAGC-ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * *
12365157 CGGCAGCACATGCTGGGCTCTGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGT
769 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGC
* * * * *
12365222 CGGAGCATCGTCGGGGAACCTGACCAGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGG-G
833 CGGAGCATCGTCGGAGAACCTAACGA-CGGCATTGGGGTTTCGGCGATCGGGGGG--GGCA
* * * * *
12365282 GGGGGTGTGCGCACATGATGTGCAATAGGTGCTGGTACTTGGCCCCTATATTTGCCCCATAACCC
1 GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * *
12365347 TCATCAAACCTCTAGAACTCATACCCTCTTAAAGAGCATTTGAGATATTACAGGTTTACTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
12365412 TA-CCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
12365476 AGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
196 AGTTTTTA-CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * ** *
12365541 GACCAAAGCTCCTTCCGAAAAAATTTTAAAAAAACTCGAACCATAAAAAGTTTCAAAAATCCGAA
260 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTG-A
* * *
12365606 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGGAGGCTTAAGGTACCATTGCATGAA
324 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT-GAGGCTTAAGGGACCATTGTATGAA
* *
12365671 ATTACAAGCCATAAAAATGGCATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCA
388 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
12365736 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCCGGACCGGCGTAGTGCCCTCC-GCCCGCCT
453 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGGCGTAGTGCCCGCCTGCCCG--T
* * *
12365800 GCCCGCTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATTACCAGTCTAAGATCAAACCGGA
515 --CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGA
* * * *
12365865 CTGAGGGTTACGATAGTAGGATCGACAGCACGTAGAGGGGGACTCGACTGATCCCCGGCCTGCGC
577 C-GAGGGTTGCGATAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCC-GCCTGCGC
** * *
12365930 ATCCCGCCCCTCTGGCCAATTGAGCGC-CTGCACGCTCATTTCGTGGGTCGACTTAGGCATACGG
640 ATCCC-CCCCTCTGGCCGGTTGAGCGCTC-GCACGCTCATTTTGTGGGTTGACTTAGGCATACGG
* ** *
12365994 AGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGATCGAGGGTT
703 AGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
*
12366059 GTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA--TTT-TTCT----------TCGC
768 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGC
** **
12366111 CGGAGCATCGTCGGAGAACCTAACCGGTGGCATTGGGGTTTCGGCGATCGGGGGGCCCGA
833 CGGAGCATCGTCGGAGAACCTAA-CGACGGCATTGGGGTTTCGGCGATCGGGGGGGGC-A
**
12366171 GGGCATGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
12366236 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
12366301 TAGCCATTAAAGTGTCT-AACATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 TAGCCATTAAAGTGTCTGAA-ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
12366365 GAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAGAAAAATACAAGGATCACGTCTACCATGTTTG
195 GAGTTTTTA-CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
*
12366430 GGGCCAAAACTCCTTTCGAAA
259 GGGCCAAAACTCCTTCCGAAA
12366451 CTTCACGTGA
Statistics
Matches: 1856, Mismatches: 180, Indels: 80
0.88 0.09 0.04
Matches are distributed among these distances:
889 172 0.09
890 135 0.07
897 56 0.03
898 31 0.02
899 5 0.00
900 101 0.05
901 885 0.48
902 209 0.11
903 172 0.09
904 6 0.00
905 84 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACGAGGGTTG
CGATAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGCCTGCGCATCCCCCCCTC
TGGCCGGTTGAGCGCTCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGCCGGAGCATCGTCG
GAGAACCTAACGACGGCATTGGGGTTTCGGCGATCGGGGGGGGCA
Found at i:12366022 original size:26 final size:26
Alignment explanation
Indices: 12365986--12366038 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12365976 GTCGACTTAG
12365986 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12366012 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12366038 G
1 G
12366039 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12366810 original size:26 final size:26
Alignment explanation
Indices: 12366780--12366832 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12366770 GTTGACTTAG
12366780 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12366806 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12366832 G
1 G
12366833 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12367309 original size:191 final size:190
Alignment explanation
Indices: 12366965--12367343 Score: 589
Period size: 191 Copynumber: 2.0 Consensus size: 190
12366955 GGATCCGACG
*
12366965 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTAATATT
1 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTAATATG
** * * * * *
12367030 GGCCCCCTATCCCTTGTCAAACCTCGAGAACTCAAACCCCCTTAAATAGCATTTTAGATTTTATA
66 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGACATTTTACA
* * *
12367095 GGTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACA
131 GGTTGCTGACAGGAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
12367155 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
1 ATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTAATAT
* *
12367220 GGGCCCCCTATCCCTCATCAAACCTCAAGAACTTACACCCCCTTAAAGAGCATTTGACATTTTAC
65 GGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGACATTTTAC
*
12367285 AGGTTTGCT-ACAGGAGCGATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
130 AGG-TTGCTGACAGGAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
12367344 GAAAATCTTG
Statistics
Matches: 171, Mismatches: 16, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
190 12 0.07
191 154 0.90
192 5 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (190 bp):
ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTAATATG
GGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGACATTTTACA
GGTTGCTGACAGGAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
Found at i:12367806 original size:26 final size:26
Alignment explanation
Indices: 12367777--12367826 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12367767 GACTTAGGCA
12367777 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
*
12367803 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12367827 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:12368385 original size:282 final size:287
Alignment explanation
Indices: 12367842--12368414 Score: 854
Period size: 282 Copynumber: 2.0 Consensus size: 287
12367832 ACCAGACCGA
* * ** *
12367842 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCAC
1 GGGTTGCGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGAGGCAC
**
12367907 CATCGACGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
66 CATCGACGGAGCATCACCGGAGAACCTGACCGACGGCATTGAAGTTCCGACGATCGGGGGGG-CG
*
12367972 AGGGTGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATATTGACCCCA
130 AGGGTGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATATAGACCCCA
* *
12368037 TATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
195 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAAGTTTGC
12368102 TGCCAGTAGCCATTAAAGTATCCGAAAT
260 TGCCAGTAGCCATTAAAGTATCCGAAAT
12368130 GGGTTGCGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGAGGCAC
1 GGGTTGCGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGAGGCAC
* * * * *
12368195 CATCG-CTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAAG-TCTGGCGATC-GGTGGG-G
66 CATCGAC-GGAGCATCACCGGAGAACCTGACCGACGGCATTGAAGTTCCGACGATCGGGGGGGCG
** * *
12368256 TTGG-GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATCAG-CCCC
130 AGGGTGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATAT-AGACCCC
* * *
12368318 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTAGAGGTTTG
194 ATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAAGTTTG
* *
12368383 CTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 CTGCCAGTAGCCATTAAAGTATCCGAAAT
12368412 GGG
1 GGG
12368415 GACACTTTTT
Statistics
Matches: 259, Mismatches: 24, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
282 138 0.53
283 6 0.02
284 3 0.01
286 5 0.02
287 9 0.03
288 98 0.38
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.25
Consensus pattern (287 bp):
GGGTTGCGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGAGGCAC
CATCGACGGAGCATCACCGGAGAACCTGACCGACGGCATTGAAGTTCCGACGATCGGGGGGGCGA
GGGTGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATATAGACCCCAT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAAGTTTGCT
GCCAGTAGCCATTAAAGTATCCGAAAT
Found at i:12374542 original size:26 final size:26
Alignment explanation
Indices: 12374506--12374558 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12374496 CCGGTCCGAT
*
12374506 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12374532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12374558 C
1 C
12374559 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12375482 original size:26 final size:26
Alignment explanation
Indices: 12375440--12375492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12375430 TCAGTCTGAT
* *
12375440 CTTAGACTGGGACTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12375466 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12375492 C
1 C
12375493 CCAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12377233 original size:26 final size:26
Alignment explanation
Indices: 12377204--12377256 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12377194 CTGGTCCGAT
12377204 CTTAGACTAG-GAATGAACTCCGTATG
1 CTTAGACT-GCGAATGAACTCCGTATG
12377230 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
12377256 C
1 C
12377257 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:12379461 original size:26 final size:26
Alignment explanation
Indices: 12379432--12379484 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12379422 CCGATCTGAT
*
12379432 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12379458 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12379484 C
1 C
12379485 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12380136 original size:882 final size:883
Alignment explanation
Indices: 12377669--12380468 Score: 3826
Period size: 905 Copynumber: 3.1 Consensus size: 883
12377659 CTGGTCTGAT
* * *
12377669 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
12377734 CGAACAAAGGGGCGGGATGCG-AAAGCCGAGTATCGGTCGGGTCCCGCTCTGCGTGCTGTCGATC
66 CGAGCAAAGGGGCGGGATGCGTAAA-CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * ** *
12377798 CTACTGCCACAACCCTCGGTACGGTCCGATCTTAGACTATGAATTAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
12377863 ACCAACGAAATGAGCGGGCGGC-CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATG
195 ACCGACGAAACGAGCGGGCGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
12377927 GATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
*
12377992 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
*
12378057 TTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
390 TTTTCTATTTTTCATGATTTTTGAAAC-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * * *
12378122 GAGTTTTGGCCCCAAACTTGGTAGACGCGATCCTTTTATTTTTGTTGGCATGCAGAAAAAAATTT
454 GAGTTTTGGCCCCAAA-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
12378187 AGCTAAAAACTC-GAAGTGTACAATAATTTGTGAGCATTTGAAAAAAGCGTCCCCATTTTCAGAC
518 AGCTAAAAACTCAG-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGAC
* * *
12378251 ACTTTAATGACTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
12378316 CGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
646 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
12378381 TGCGCACACCCCACCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTACGA
711 TGCGCACA---C-CCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTAC-A
* * * *
12378446 CGATGCTCCGGCGATGGTGCCCTGGCAAAGAAAAATCTAGCACCAACACATGCTCGAGCCCAGCA
771 CGA-------GCGATGGTGCCCCGGTAAAGAAAAATC-GGCACCAACACATGCCCGAGCCCAGCA
* * *
12378511 TGTGCTGCTGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
828 TGTGCT-CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
12378568 CTTGGACTGGGAATGAACTTCGTATGCCTAAGTCAATCCACGAAATGAGC-TGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* ** * ** *
12378632 CG-GCCAGAGGGGCGGGATGCGTAAGGCGGGGATCGATCGATTCTCCCTCTGCGTGCTGCCGATC
66 CGAG-CAAAGGGGCGGGATGCGTAAACCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
12378696 TTGCTCCCGCAACCCTCGGTCCAG-TCGATCCTAGACTGGGAATGAACTCTGTATGCCTAAGCTA
130 CTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
12378760 ACCGACGAAACGAGTGGGCAGGCGGACGGGCAGTTACTATGCCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGGGC-GGC-G-CGGGC----ACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
12378825 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
253 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* * *
12378890 ATTTTTATGGCTTGTAAATTCATATAATGTTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
318 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
12378955 CAACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCGAGATTTTTTTAAATTTTT
383 CGACTCGTTTTCTATTTTTCATGATTTTTGAAA-CTTTTACGGTTCGGGATTTTTTAAAATTTTT
* ** * *
12379020 TCGAAAGGAGTTTTCACCCCAATCTTGGTAGACGTGATCCTTGTATTTTTTGTTGGGATGCACAA
447 TCGGAAGGAGTTTTGGCCCCAA-ATTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAA
* * * *
12379085 AAAAATTCAGCTAAAAACTGAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTATCCCCATT
510 AAAAATTCAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
12379150 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
575 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
12379215 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
640 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
12379280 ATCATGTGCGCACACCCCCCGACCCCCCAATCATCAGAACCCCAATGTCACCGGTCAGGTTCT-C
705 ATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTAC
* *
12379344 -CGA-CGATGGTGCCCCGGTAAAGAAAAATACGGCACCAGCACATTCCCGAGCCCAGCATGTGCT
770 ACGAGCGATGGTGCCCCGGTAAAGAAAAAT-CGGCACCAACACATGCCCGAGCCCAGCATGTGCT
* * * * *
12379407 ATCGCAACCCTCGATCCGATCTGATCTTAGACTGGGATTGAACTCCGTATG
834 -CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
12379458 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGTGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * *
12379523 CG-GCAGAGGGGCAGGATGCGTAAACCGGGGATCGGTCGGGTCCCCCTCTGCGGGCTGCCGATCC
66 CGAGCAAAGGGGCGGGATGCGTAAACCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * **
12379587 TGCTACCGCAACCCTCAGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGTATAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
12379652 CCGACGAAACGAGGGGGCGGGCAGTCGTGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGC-GGC-G-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
12379717 TCGATCGATAGGGT-GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCAATTTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* *
12379781 TATGGCTTGTAAATTTATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
12379846 CGTTTTCTATTTTTCATGATTTTTCAAACTTTTATGGCTCGGGATTTTTTAAAATTTTTTCGGAA
388 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * *
12379911 GGAGTTCTGGCCCTAAAAT-GTAGACGTGATCCTTGTATGTTTT-TTGGCATGCACAAAAAAATT
453 GGAGTTTTGGCCCCAAATTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATT
*
12379974 CAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACA
517 CAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
12380039 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTC
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
12380104 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
12380169 GCGCACACCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
712 GCGCACACCCCCC--GACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT---AC-A
* * * * *
12380234 TGCTCGAGCGATGGTGTCTCAGTGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCATGT
771 ----CGAGCGATGGTGCCCCGGTAAAGAAAAAT-CGGCACCAACACATGCCCGAGCCCAGCATGT
12380299 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
831 GCT-CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
12380353 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCCGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * ** * *
12380418 CGACCAAAGGGGCGGGATGTGCAAGTCGTGGATCGGCCGGGTCCCCCTCTG
66 CGAGCAAAGGGGCGGGATGCGTAAACCGGGGATCGGTCGGGTCCCCCTCTG
12380469 ACCAGAGAGA
Statistics
Matches: 1670, Mismatches: 199, Indels: 67
0.86 0.10 0.03
Matches are distributed among these distances:
882 218 0.13
883 22 0.01
884 37 0.02
885 44 0.03
886 133 0.08
887 46 0.03
888 1 0.00
890 209 0.13
891 77 0.05
894 3 0.00
895 158 0.09
896 39 0.02
897 49 0.03
898 85 0.05
899 46 0.03
900 1 0.00
901 45 0.03
902 1 0.00
905 385 0.23
906 71 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (883 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGAGCAAAGGGGCGGGATGCGTAAACCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTTGAAACTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTACACGAGCGATGG
TGCCCCGGTAAAGAAAAATCGGCACCAACACATGCCCGAGCCCAGCATGTGCTCCGCAACCCTCG
GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:12380363 original size:26 final size:26
Alignment explanation
Indices: 12380327--12380379 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12380317 CTGGTCTGAT
12380327 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12380353 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12380379 C
1 C
12380380 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12381136 original size:26 final size:26
Alignment explanation
Indices: 12381107--12381160 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
12381097 TCTGGTCCGA
12381107 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
*
12381133 GCTTAGACTGGGAATGAACTCTGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
12381159 GC
1 GC
12381161 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:12381241 original size:781 final size:778
Alignment explanation
Indices: 12379692--12381248 Score: 2478
Period size: 781 Copynumber: 2.0 Consensus size: 778
12379682 ACTACGCCGG
12379692 CCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGTAGGTGGGTTTAGGCACATCTTCAT
1 CCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGTAGGTGGGTTTAGGCACATCTTCAT
* * *
12379757 ATTTCTACGTGCCAATGCAATTTTTATGGCTTGTAAATTTATGCAATGGTCCCTTAAGCCTTCAC
66 ATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
12379822 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTATGGCTCG
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTACGGCTCA
* *
12379887 GGATTTTTTAAAATTTTTTCGGAAGGAGTTCTGGCCCTAAAATGTAGACGTGATCCTTGTATGTT
196 AGATTTTTTAAAATTTTTTCGGAAGGAGTTCTGGCCCCAAAATGTAGACGTGATCCTTGTATGTT
*
12379952 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAA
261 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAA
*
12380017 AAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCT
326 AAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTAAAATGCT
12380082 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
391 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * * *
12380147 CAGCACCCATCGTACATCATGTGCGCACACCCCCCAGGCCCCCCCGATCGCCGGAACCCCAATGC
456 CAGCACACACCGCAAATCATCTGCGCACACCCCCCAGGCCCCCCCGATCACCGGAACCCCAATGC
* * * *
12380212 CGCCGGTCAGGTTCTCCGACGATGCTCGAGCGATGGTGTCTCAGTGAAGAAAAATGCGACACCAA
521 CGCCGGTCAGGTTCTCCGACGATGCTCGAGCGATGGCGCCTCAGCGAAGAAAAATACGACACCAA
* *
12380277 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
586 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAGCTTAGACTGGGAATG
*
12380342 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
651 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * *
12380407 CGGTGCTCAGCCGACCAAAGGGGCGGGATGTGCAAGTCGTGGATCGGCCGGGTCCCCCTCTGA
716 CGGTGCTCAGCCGACCAAAGGGGCAGGATGCGAAAGTCGAGGATCGACCGGGTCCCCCTCTGA
* *
12380470 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGT-GTAGGTGGGTTTAGGCACATCTTCA
* *
12380535 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
65 TATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
** * *
12380600 CGTTCAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
130 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAC-TTTTACGGCT
** * * *
12380665 CAAGATTTTTTAAAATTTTTTCTTAAGGAGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTA
194 CAAGATTTTTTAAAATTTTTTCGGAAGGAGTTCTGGCCCCAAA-AT-GTAGACGTGATCCTTGTA
*
12380730 T-TTTAGTTGGCATGCACAAAAAACTTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCA
257 TGTTT-GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAG-AGTGTACAAGATTTTGTGACCA
* * *
12380793 TTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACCAGTAAAATCTCA
320 TTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTAA
* *
12380857 AATGCTCTTTAATGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
385 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
12380922 CAGTACCAGCACACACCGCAAATCATCTGCGCACACCCCCTC-GGCCCCCCCGATCACCGGAACC
450 AAGTACCAGCACACACCGCAAATCATCTGCGCACACCCCC-CAGGCCCCCCCGATCACCGGAACC
**
12380986 CCAATGCCGCCGGTCAGGTTCTCCGGGGATGCTCCGA-CGATGGCGCCTC-GACGAAGAAAAATA
514 CCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CGAGCGATGGCGCCTCAG-CGAAGAAAAATA
* * *
12381049 CGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGAGCTTAGA
577 CGACACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAGCTTAGA
*
12381114 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
642 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
12381179 CGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCAGGATGCGAAAGTCGAGGATCGACCGGGTCCC
707 CGAGCGTGCCGGTGCTCAGCCGACCAAAGGGGCAGGATGCGAAAGTCGAGGATCGACCGGGTCCC
12381244 CCTCT
772 CCTCT
12381249 ACGTGCGGCC
Statistics
Matches: 713, Mismatches: 57, Indels: 15
0.91 0.07 0.02
Matches are distributed among these distances:
778 37 0.05
779 136 0.19
780 46 0.06
781 404 0.57
782 90 0.13
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (778 bp):
CCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTACGGCTCA
AGATTTTTTAAAATTTTTTCGGAAGGAGTTCTGGCCCCAAAATGTAGACGTGATCCTTGTATGTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTAAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACACACCGCAAATCATCTGCGCACACCCCCCAGGCCCCCCCGATCACCGGAACCCCAATGC
CGCCGGTCAGGTTCTCCGACGATGCTCGAGCGATGGCGCCTCAGCGAAGAAAAATACGACACCAA
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAGCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
CGGTGCTCAGCCGACCAAAGGGGCAGGATGCGAAAGTCGAGGATCGACCGGGTCCCCCTCTGA
Found at i:12382044 original size:26 final size:26
Alignment explanation
Indices: 12382008--12382060 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12381998 CTGATCTGAT
*
12382008 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12382034 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12382060 C
1 C
12382061 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12382206 original size:900 final size:899
Alignment explanation
Indices: 12380470--12387315 Score: 9038
Period size: 899 Copynumber: 7.6 Consensus size: 899
12380460 CCCCCTCTGA
*
12380470 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
12380535 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
** *
12380600 CGTTCAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* ** *
12380665 CAAGATTTTTTAAAATTTTTTCTTAAGGAGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTA
196 CAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
12380730 TTTTAGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
261 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
12380795 TGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACCAGTAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
12380859 TGCTCTTTAATGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCA
391 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * *
12380924 GTACCAGCACACACCGCAAATCATCTGCGCACACCCCCTCGGCCCCCCCGATCACCGGAACCCCA
456 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCCA
* * * * * *
12380989 ATGCCGCCGGTCAGGTTCTCCGGGGATGCTCCGACGATGGCGCCTCGACGAAGAAAAATACGGCA
521 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCA
* * * * *
12381054 CCAACACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGAGCTTAGACTGGG
586 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
* *
12381119 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
651 AATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * *
12381184 GTGCGGGTGCTCAGTCGGCCAGAGGGGCAGGATGCGAAAGTCGAGGATCGACCGGGTCCCCCTCT
716 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT
* * * *
12381249 ACGTGCGGCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCC
781 GCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
12381314 GTATGCCTAAGCCAACCGATGAAACGAGCTGATGAGCGGGCGGGCTCTACGTCGG
846 GTATGCCTAAGCCAACCGATGAAACGAGC-GACGGGCGGGCGGGCACTACGCCGG
* * *
12381369 CCAGAGAGACAGGATACACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
12381434 TATTTCTACGTG-CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * **
12381498 CGTGAAGTTTTATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTCAAAACTTTTTACGGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* * *
12381563 CAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTAGGTCCCAAACTTGGTAGACGTGATCCTTGTA
196 CAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * **
12381628 TTTTTTTTGGCACGCACAAAAAATTTTTGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
261 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
12381693 TGAAAAGAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * * **
12381758 TGCTTTTTAAGGGGGTGTGAGGTCTCGAGGTTTGATAAGGGATAGGGGGATAATATAAGGGCCAA
391 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
12381823 GTACCAGCACCTATCGCACATCATGTGCGCACACCGCCCTCGGCCCCCCCGATCGCCAGAACCCC
456 GTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCTCGGCCCCCCCGATCGCCGGAACCCC
* * * * * *
12381888 AATGCCGTCGGTCTGGTTCTCTGGCGATGCTCCAGCGATGTTGCCCCGACGAAGAAAAATGCGGC
520 AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGC
* * * * * *
12381953 ACCAACACATGCTCGAGCCCAACATGTGCTGCTGCAGCCCTCGGTCTGATCTGATCTTAGACTGG
585 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
* * *
12382018 GAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAG
650 GAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * * *
12382083 CATGCGAGCGCTCAGTCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCAGGTCCCCATT
715 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTC
* * ** * * * *
12382148 TGTGTGCTACCGATCCTATTGCCGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTC
780 TGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTC
** *
12382213 CGTATGCCTAAGCCAATTGATGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCTG
845 CGTATGCCTAAGCCAACCGATG-AA--A-CGAGC-GACGGGCGGGCGGGCACTACGCCGG
* * * *
12382273 CTACAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGATTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
12382338 TATTTCTGCTTTCCAATGCCAGTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * *
12382403 CGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCCGCT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* *
12382468 CGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
196 CAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * * *
12382533 TTTTTGTTGGCATGCA-TAAAAAATTCACCTAAAAACTCAAACTCTACAAGATTTTGTGACCATT
261 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
12382597 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAACGGTAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
12382662 TGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
391 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
12382727 GTACCAGCACCCATCGCACATCATGTGTGCACACCCCCT--G-CCCCCCGATTGTCGGAACCCCA
456 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCCA
* * * * * *
12382789 TTGTCGCCTGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATGTGGCA
521 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCA
* * * * *
12382854 CCAGCACATGCCCGAGCCCAGCAAGTGCTCCCGTAACCCTCGGTCCGGTCTGATCTTAGGCTGGG
586 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
*
12382919 AATGAATTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
651 AATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
** * * ** *
12382984 GTGCTTGTGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGGTTGGGTCCCACTCT
716 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT
* * ** * * * * *
12383049 ACGTGTTAACGATCCTGCTACCGCAACCCTTGGTCCTGTCTGATCTTAGACTGGGAATGAACTCT
781 GCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * *
12383114 GTATGCCTAAGCCAACCGACGAAACGAGCAGGTTGGCGGGCGGGCGGGCGGGCACTATGCCGG
846 GTATGCCTAAGCCAACCGATGAAAC--G-A-----GC-GACGGGCGGGCGGGCACTACGCCGG
* * * * *
12383177 CCAGAGAAACGGGATGCGCAAGCTGTTGATCGATAGGGTGGTGGGTGGGTTTAGGCGCATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
12383242 TATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTTGTCCCTTAAGCCTTCA
66 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
12383307 CGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTATGGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* * * * * *
12383372 CGGGAATTTTCACAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACCTTATCCTTGTA
196 CAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
12383437 TTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAAATTTTGTGACCATT
261 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
12383502 TGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * * *
12383567 TGCTATTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGAGATAGGGGCCCAATATAAGGGCCAA
391 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * ** *
12383632 GTA-CAGCACCCATCACACATCATGTGCGCACACCCACCCCCGGCTCCCCTAATCACCGGAACCC
456 GTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCTCGGCCCCCCCGATCGCCGGAACCC
* * * * * ** * * * *
12383696 CAAATTCCACCGGTCAGATTCTCCGACGAAGCTCCTACGATGGCGCCCCGACAAAGAAAAATACG
519 C-AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCG
* * * * * *
12383761 GCACCATCACATGCTCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCGGTCCGATATTAGACT
583 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACT
* *
12383826 GGGAATGAACTCCGTATGCTTAGA-TTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
648 GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * **
12383890 AGCGTACGGGCGCTCAGCCTGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCC
713 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCC
* * * * * * * * *
12383955 TCTGCGTGCTACCAATCTTGCTACTGTAACCCTC-AGTCTGATCTGATCTTAGAGTGGGAATGAA
778 TCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAA
* * * ** * *
12384019 GTCCATATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGTAGGCAGGCACTACGTCGG
842 CTCCGTATGCCTAAGCCAACCGATGAAACGAGCGA-CGGGCGGGCGGGCACTACGCCGG
*
12384078 CCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
12384143 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCTTTAGGCCTTCA
66 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
12384208 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* *
12384273 CAGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
196 CAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * **
12384338 TTTTTTTTGGCATGTACAAAAAAATTCAGCTAAAAACTCCTAGTGTACAAGATTTTGTGACCATT
261 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
12384403 TGAAAAAAGTGTCCCCATTTTAAACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * * * *
12384468 TGCTCTTTAAGGGGGTATGAGTTCTTGAGGTATGATGAGGGATAGGGGCCCAATATAAGGGCCTA
391 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
12384533 GTACCAGCACCCATCGCACTTCATGTGCGGC-CAACCCCC-CGGCCCCCTCGATCGCCGGAACCC
456 GTACCAGCACCCATCGCACATCATGTGC-GCAC-ACCCCCTCGGCCCCCCCGATCGCCGGAACCC
* * * * * * *
12384596 CAATGCCACCGGTCAAGTTCTCCAGCAATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGTGG
519 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGG
* * * * *
12384661 CACCAGCACATGCCCAAGCCGAGCATGTGCTGCCGCAACCCTCAGTCTGGTATGATCTTAGACTA
584 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
* * * *
12384726 GGAATG-A----GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGGAATGA
649 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
12384786 GCGTGCGGGCGCTCAGCCGGCCAGTGGGGTGGGATGCACAAACCGAGGATCGGCCGGGTCCCCCT
714 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCT
* * * * * * * *
12384851 CTGCGTGCTGTCGATCCTGCTATCACAACCCTCG-GCTTGGTCCAATCTTAGATTGGGAATCAAC
779 CTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATC-CGGTCCGATCTTAGACTGGGAATGAAC
** * *
12384915 TTTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGTGAGGGCACTACGGCGG
843 TCCGTATGCCTAAGCCAACCGATGAAACGAGC-GACGGGCGGGC----GGGCACTACGCCGG
* **
12384977 CCAGAGAGACGGGATGTGCAAGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * * *
12385042 TATATCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCTTTAAGCCTTCA
66 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* ** *
12385107 CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
*
12385172 CGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
196 CAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
12385237 TTTTTATAGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
261 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
12385302 TGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
12385367 TGCTCTTTAAGGGGGTATGAGTTCTC-ACGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCA
391 TGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* ** * *
12385431 AGTACCAACACCCATCATACATCATGTGCGCACA-CCCCTCGGCGCCCCCGATCGTCGGAACCCC
455 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCC
** * *
12385495 AATGCCATCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGC
520 AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGC
**
12385560 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCAAACAACCCTCGGTCCGGTCGAACTTAGATTGG
585 ACCAGCACATGCCCGAGCCCAGCATGTGCTGC-CGCAA-CC-C--T-CGGT----C------T--
* * *
12385625 GAATGAACTCTATATGCTTAGACTGGGAATGAAC-TCTATATGCTTAGACTGGGAATGAAATCCG
632 G---G---TCT-GAT-CTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCG
* * *
12385689 TATGCCTAAGTCAACCCACGAAACGAGCCTGCGGGCACTCAGCCGCCCAGAGGGGCGGGATGCGC
688 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* ** * * * * * *
12385754 AAGCTGGGGATCGGCCGGGTCCCCCTCCACGTGCTGTCGATCCTACTGCTGCAGCCCT-AAGTCC
753 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGA-TCC
* * * *
12385818 AGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGG
817 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-GACGGG
12385883 CGGGCGGGCACTACGCCGG
881 CGGGCGGGCACTACGCCGG
** * * *
12385902 CCAGAG-GACGGGATGCGTGAGCTGTGGATCGATAGGGTTGTATGTGGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
12385966 TATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * *
12386031 CATGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGA-GTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGT
* *
12386095 TCATGATTTTTTAAAAATTTTTTGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
195 TCAGGATTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
12386159 TATTTTTGTCGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
259 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
12386224 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
12386289 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * ** * * *
12386354 AAGTACCACCACCCATCGCACATCATGTGTGCACA-CCCC-CGGCACCTACAATCGTCGTAACCC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCC
* ** * * * * *
12386417 CAATGCTGTAGGTCAGGTTCTTCGACGATGCTCCGGCGACGGTGCCCCGGTGAAGAAAAATGTGG
519 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGG
* *
12386482 CACCAGCACATGTCCGAGCCCAGCATGTGCTGCCGCAA--C-C---C---TCAG-TC-----C--
584 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
*
12386530 ---A-G---TTCG-AT-CTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCCACGAAACGA
649 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
12386586 GCGTGTGGGCACTCAGCCGGCCAGAGGGACGGGATGCGCAAGCTGGGGATCGGCTGGGTCCCCCT
714 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCT
* * * * * *
12386651 CTGCGTGCTGCCAATCCTACTGCCGCAGCCCTC-AGTCCGGTCCAATCTTAGAATGGGAATGAAC
779 CTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAAC
*
12386715 TCCGTATGCCTAAGCCAATCGATGAAACGA--G-CGGGCGGGCGGGCACTACGCCGG
843 TCCGTATGCCTAAGCCAACCGATGAAACGAGCGACGGGCGGGCGGGCACTACGCCGG
* *
12386769 CCAGAGAGATGGGATGCGCGAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
12386834 TATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
12386899 CATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTGCGGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* *
12386964 CGGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGT
196 CAGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
12387028 ATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGT
260 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
12387093 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTGGTAGCAAACTTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
12387158 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATACAAGGGCCA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
** ** * *
12387223 AGTACCAGCACCCATCGCACATCATGTGTACACACCCCC-CAACCCCACCGATCGCCAGAACCCC
455 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCC
12387287 AATGCCGCCGGTCAGGTTCTCCGGCGATG
520 AATGCCGCCGGTCAGGTTCTCCGGCGATG
12387316 GTGCCCCGAT
Statistics
Matches: 5235, Mismatches: 631, Indels: 192
0.86 0.10 0.03
Matches are distributed among these distances:
867 39 0.01
868 444 0.08
869 44 0.01
871 188 0.04
872 2 0.00
874 2 0.00
876 1 0.00
877 1 0.00
882 1 0.00
887 1 0.00
888 1 0.00
890 2 0.00
894 12 0.00
895 173 0.03
896 2 0.00
897 5 0.00
898 352 0.07
899 781 0.15
900 653 0.12
901 451 0.09
902 25 0.00
903 9 0.00
904 585 0.11
905 350 0.07
906 4 0.00
907 2 0.00
908 2 0.00
909 186 0.04
910 126 0.02
914 2 0.00
916 1 0.00
918 1 0.00
919 1 0.00
922 5 0.00
923 110 0.02
924 449 0.09
925 32 0.01
929 189 0.04
930 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
CAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCCA
ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
AATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT
GCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGATGAAACGAGCGACGGGCGGGCGGGCACTACGCCGG
Found at i:12382944 original size:26 final size:26
Alignment explanation
Indices: 12382908--12382960 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12382898 CCGGTCTGAT
* * *
12382908 CTTAGGCTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12382934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12382960 C
1 C
12382961 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12383848 original size:26 final size:25
Alignment explanation
Indices: 12383819--12383869 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
12383809 CGGTCCGATA
12383819 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGA-TGGGAATGAACTCCGTATGC
*
12383845 TTAGATTGGAATGAACTCCGTATGC
1 TTAGATGGGAATGAACTCCGTATGC
12383870 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (25 bp):
TTAGATGGGAATGAACTCCGTATGC
Found at i:12385693 original size:26 final size:26
Alignment explanation
Indices: 12385615--12385683 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
12385605 TCCGGTCGAA
*
12385615 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
12385641 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
12385667 CTTAGACTGGGAATGAA
1 CTTAGACTGGGAATGAA
12385684 ATCCGTATGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:12388457 original size:191 final size:195
Alignment explanation
Indices: 12388128--12388512 Score: 564
Period size: 191 Copynumber: 2.0 Consensus size: 195
12388118 CAAGATTTTC
* * * * *
12388128 TGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGGCTCCTGTAGCAAACCTGTAAAA
1 TGACAATTTGAAAAAAACGTCCCCATTTCAGACACTTTAATGGCTACTGCAGCAAACCTATAAAA
* * * * ** *
12388193 TGTCAAATGCTCTTTAAGGGGGTGTAAGTTCTTGAGGTTTGATGCGGGATAGGGGGCCCATATAA
66 TCTAAAATGCTATTTAAGGGGGTGTAAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAA
12388258 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC-A-CCC-CCCC-GGCCCCCCCGATTG
131 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACCCCACCCCTGGCCCCCCCGATTG
* *
12388319 TGACAATTTGAAAAAAATGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGC-AACCTATAAA
1 TGACAATTTGAAAAAAACGTCCCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTATAAA
* *
12388383 ATCTAAAATGCTATTTAAGGGGGTTTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATA
65 ATCTAAAATGCTATTTAAGGGGGTGTAAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATA
*
12388448 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCACCCCTGGCCCCCCCGAT
130 AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAA-CCCCACCCCTGGCCCCCCCGAT
12388513 CGTCGGAACC
Statistics
Matches: 171, Mismatches: 17, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
191 147 0.86
192 5 0.03
194 3 0.02
195 4 0.02
196 12 0.07
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (195 bp):
TGACAATTTGAAAAAAACGTCCCCATTTCAGACACTTTAATGGCTACTGCAGCAAACCTATAAAA
TCTAAAATGCTATTTAAGGGGGTGTAAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACCCCACCCCTGGCCCCCCCGATTG
Found at i:12390421 original size:26 final size:26
Alignment explanation
Indices: 12390391--12390443 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12390381 GATGACTTAG
12390391 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12390417 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12390443 G
1 G
12390444 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12391332 original size:26 final size:26
Alignment explanation
Indices: 12391292--12391344 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12391282 GTTGACTTAG
*
12391292 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
*
12391318 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
12391344 G
1 G
12391345 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:12391979 original size:902 final size:901
Alignment explanation
Indices: 12389783--12394804 Score: 6622
Period size: 877 Copynumber: 5.6 Consensus size: 901
12389773 GTGCCCATTT
* *
12389783 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTCAAATGGGGACACTTT
1 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
12389848 TTTCAAATTGTCAAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
66 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
12389913 AAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTCCCGAAGAAATTTTAAAAAA
131 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
* * * * * *
12389978 TCCCTAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAATCGAGTCGTCTTGCTATGAAACT
196 TCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
**
12390043 TCACGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAACGCA
261 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ACGCA
12390108 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-AGCTTGCGCATCCCGTC
325 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGCATCCCGTC
* * *
12390172 TCTCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCGTA
389 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
12390237 CGGAGTTCATTTCCAGTCTAAGATCAGCCCAGACCGAGGGTTGCGGCAGCAGGATCGGCAACACG
454 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACG
* * *
12390302 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGCA
519 TAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCACCCGCA
* * * *
12390367 CGCTCGTTTCATGGGATGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
583 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
12390432 TCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGCAGCACATGTTGGGCTTGAGCATGTG-TC
648 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-
* *
12390496 GGTGTCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGCAGAACCTGACCGGCGGC
712 GGTGCCGCATTTTTCTTCACC-GGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * * * *
12390561 ATTGGGGTTCCGACGATCAGAGGGGCCGGGGGGTGTGTGCACATGATGTGCAATGGATGGTGGTA
776 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
12390626 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
841 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
12390687 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTCTGAAATGGGGACACTTT
1 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
12390752 CTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAAC
66 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
12390817 AAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
131 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
* ** * *
12390882 TCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGGAAATGAGTCGTCTTGCTATGAAACT
196 TCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
12390947 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
261 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
12391012 AAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTTGCGCATCACGTCTC
326 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
* * ** * * *
12391077 TCTGGCTGGCGTAGTGCCCGTCTACCCGCTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGTATACG
391 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * ** ** * *
12391142 GAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGGTTGCGTTAGCAGGATCGATAGGACGTG
456 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGTA
* * * * * *
12391207 GAGGGGGA-CCGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGTTGAGCGCCCGCACAC
521 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGCTGAGCACCCGCACAC
* *
12391271 TTGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
586 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
12391336 CAATCTAAGATCGGACCGGACCGAGGGTTCCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTG
651 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * * * *
12391401 CTGCATTTTTCTTCACCGAGGCACCATAACCGGAGCATTGCCAGAGAACCTGATCGACGACGTTG
716 CCGCATTTTTCTTCACCG-GGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * *
12391466 GGGTTCCGACGATTGGGGGGGCCGTGGGGGGTGTGTGCACATGATGTGCGATTGGTGCTGGTACT
780 GGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
12391531 TGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAA
843 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
12391590 GAGCATTTGAGATTTTACAGTTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
1 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
12391655 TTTCAAATGGTCACGAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAC
66 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
12391719 AAAAATAAAAGGATCATGTATACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
131 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
*
12391784 TCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
196 TCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
* * * *
12391849 TCACGTGAAGGCTTAAGGGACCTTTGTGTGAATTTACAAGCCATAGAAATGGCATTGGCACGTAG
261 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
12391914 AAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
326 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
* * *
12391979 TCTGGCCGACGTAGTGCCCACCCGTCCGCCCGCTCGTTCGTTTTGTCGGTTGGCTTATGCATACG
391 TCTGGCCGGCGTAGTG----CCCGCCCGCCCGC-C---C-----G-C------C---CGC-T-C-
* * * * *
12392044 GAGTTCATTCCCAGTCGATTGGCTTAGGCATAAGGAGTTCATTACCAGTCTAAGATTGGACCGGA
430 --G-T--TT--C-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * *
12392109 CTGAGGGTTACGACAGCAGGATCAGCAGCACGCT-GAGGGGGACCCGACCGATCCCCGACTTGCG
487 CCGAGGGTTGCGACAGCAGGATCGGCAGCACG-TAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * *
12392173 CATCCCACCCCTTTGGCCGGCTGAGCCCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATAC-G
551 CATCCCGCCCCTCTGGCC-GCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * *
12392237 AGTTCATTCCCAGTCTAAGCATACGGAGTTCAATCCCAGTCTATGATCGGACCGAACTGAGGGTT
615 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * * *
12392302 GCGGCAGCAGATGCTGGGCTCGGGCATGTGTTGGTACCACATTTTTCTTCACCGGTGCACCATCG
680 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG-GCACCATCA
* * * * * * *
12392367 TCGGACCATCACCGGAGAACCTGACCGGTGCCATTGGGGTTCCAGA-GGTCGAGGGGGCCGGGGG
744 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGG
12392431 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
808 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
12392496 CAAACCTCGAGAACTCATA-CCCCTTAAA
873 CAAACCTCGAGAACTCACACCCCCTTAAA
* * *
12392524 AAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTT
1 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
12392589 TTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAAC
66 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * *
12392654 AGAAATACAAGGATCACATTTACCAAGTTTTGGGGTCAAAAATCCTTTCGAAAAAATTTTAAAAA
131 AAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
** ** * *
12392719 ATCCCGAACCGTAAAAAGTTTCAAAAATCAAGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
195 ATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
* *
12392784 TTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
260 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * *
12392849 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCTTCCCGTCT
325 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
* ** * * * * *
12392914 CTCTAGCCTACATAGTGCCCGCCCGCCCACCCGCCCGTTCGTTTTGTCGGTTGGCTTATGCATAC
390 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** **
12392979 GGAGTTCATTCCCAGTCTAAGATTGGACCAAACTAAGGGTT-TTAGCAGCAGGATCGGCAGCACG
455 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCAGGATCGGCAGCACG
* * *
12393043 TAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCACTCTGGCCGAATGAGCACCCG--
519 TAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCACCCGCA
* * * * *
12393106 TA--CG---C-T-CGTT---TT----AT--GG-GTTGA-----A-T-TAGGCATACGAAGTTCAT
583 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
12393147 TCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTGCTG
648 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * *
12393212 GTGCCGTATATTTCTTCATCGGTGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGGTGGCA
713 GTGCCGCATTTTTCTTCACCGG-GCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
** * * * *
12393277 TTGGGGTTCCGGTGATCGGTGGGGTCTGGGGGTTATGCGCACATGATGTGCGATGGGTGCTGGTA
777 TTGGGGTTCCGACGATCGG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
12393342 CTT-ACGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATA-CCCCTTAAA
841 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
12393401 GAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAAATGGGGATACTT
1 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTT
* * *
12393466 TTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTATAGCTGAATTTTTTTGTGAATGCCAA
65 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * ** * ** *
12393531 AAAAAATACTAGGATCACGTATACCTTGTTTGGGGCTAAAACGCCCTCCGAAAAAATTTTAAAAA
130 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* * *
12393596 ATCCTGAACCACAAAAAGTTTCCAAAATCGTGACAAATAAAAAACGAGTCGTCTTGCCATGAAAC
195 ATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
** *
12393661 TTCACGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
260 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
12393726 GAAATATGAAGATGTGCCTAAACTCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCT
325 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
* * **
12393791 CTCTGGCCAGCGTAGT----GCCCTCCCGCCCGCCCGCTCGTTTCGTCTCTTGGCTTAGGCATAC
390 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * **
12393852 GGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGATAGCAGGATTGGCAGCACAC
455 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGT
* * * *
12393917 AGAAGGGGACCCGACCGATCCCCGACCTT-CGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCA
520 AGAGGGGGACCCGACCGATCCCCG-GCTTGCGCATCCCGCCCCTCTGGC-CGCTGAGCACCCGCA
* *
12393981 CGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
583 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** *
12394046 TCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTTCTG
648 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
12394110 GTGCCGCATTTGTCTTCATCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGCA
713 GTGCCGCATTTTTCTTCA-CCGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* * *
12394175 TTAGGGTTCCGGCGATCGGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
777 TTGGGGTTCCGACGATC-GGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
12394240 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAA
840 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
12394302 GACCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTT
1 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
12394366 TTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTGGCTGAATTTTTTGGTGCATGCCAAA
66 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
12394431 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCTGAAAAAATTTTAAAAAA
131 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
* * * * ** *
12394496 TCCCGAACCACTAAAAGTTTCAAAAATCATCAAAAATAAAAAACGAGCCGTCTTATCATTAAACT
196 TCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
* * *
12394561 TCAAGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
261 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
12394626 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
326 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
* * * * * *
12394691 TCTGGCCGGCATAGTGCCCACCCGCCCTCTCGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACA
391 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * *
12394756 GAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCA
456 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCA
12394805 TATGCTAGGC
Statistics
Matches: 3613, Mismatches: 414, Indels: 183
0.86 0.10 0.04
Matches are distributed among these distances:
873 139 0.04
874 5 0.00
876 1 0.00
877 465 0.13
878 141 0.04
879 1 0.00
880 1 0.00
881 1 0.00
882 3 0.00
884 4 0.00
885 3 0.00
886 2 0.00
889 2 0.00
890 2 0.00
891 2 0.00
892 4 0.00
893 3 0.00
894 1 0.00
895 1 0.00
897 1 0.00
898 115 0.03
899 392 0.11
900 49 0.01
901 264 0.07
902 435 0.12
903 459 0.13
904 298 0.08
905 2 0.00
906 11 0.00
907 1 0.00
908 1 0.00
910 1 0.00
911 1 0.00
912 1 0.00
913 1 0.00
915 1 0.00
916 2 0.00
922 2 0.00
923 1 0.00
925 3 0.00
926 1 0.00
927 1 0.00
928 1 0.00
930 1 0.00
931 2 0.00
932 11 0.00
933 2 0.00
934 112 0.03
935 126 0.03
936 302 0.08
937 190 0.05
938 42 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
TCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGTA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGCTGAGCACCCGCACAC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCACCGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
Found at i:12392075 original size:34 final size:34
Alignment explanation
Indices: 12392023--12392093 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
12392013 CGTTCGTTTT
* * * *
12392023 GTCGGTTGGCTTATGCATACGGAGTTCATTCCCA
1 GTCGATTGGCTTAGGCATAAGGAGTTCATTACCA
12392057 GTCGATTGGCTTAGGCATAAGGAGTTCATTACCA
1 GTCGATTGGCTTAGGCATAAGGAGTTCATTACCA
12392091 GTC
1 GTC
12392094 TAAGATTGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (34 bp):
GTCGATTGGCTTAGGCATAAGGAGTTCATTACCA
Found at i:12392268 original size:26 final size:25
Alignment explanation
Indices: 12392230--12392279 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
12392220 GTTGACTTAG
*
12392230 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCAATCCCAGTCTAA
12392255 GCATACGGAGTTCAATCCCAGTCTA
1 GCATAC-GAGTTCAATCCCAGTCTA
12392280 TGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (25 bp):
GCATACGAGTTCAATCCCAGTCTAA
Found at i:12394041 original size:26 final size:26
Alignment explanation
Indices: 12394005--12394057 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12393995 GTTGACTTAG
*
12394005 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12394031 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12394057 G
1 G
12394058 ATCGGACAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12394431 original size:899 final size:902
Alignment explanation
Indices: 12393132--12394795 Score: 2588
Period size: 899 Copynumber: 1.8 Consensus size: 902
12393122 GTTGAATTAG
*
12393132 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAACACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAACACATGCTGGG
* *
12393197 CTCGGGCATGTGCTGGTGCCGTATATTTCTTCATCGGTGCACCATCGCTGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATATTTCTTCATCGGGGCACCATCGCTGGAGCATCACCGGAGA
** * * * * * *
12393262 ACCTGACCGGTGGCATTGGGGTTCCGGTGATCGGTGGGGTCTGGGGGTTATGCGCACATGATGTG
131 ACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTG
* *
12393327 CGATGGGTGCTGGTACTTACGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATA
196 CGATGGGTGCTGGTACTTACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12393392 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAAATG
261 CCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATG
* *
12393457 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTATAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTATAGCTGAATTTTTTGGT
* ** *
12393522 GAATGCCAAAAAAAATACTAGGATCACGTATACCTTGTTTGGGGCTAAAACGCCCTCCGAAAAAA
391 GAATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACGCCCTCCGAAAAAA
* * * * * * *
12393587 TTTTAAAAAATCCTGAACCACAAAAAGTTTCCAAAATCGTGACAAATAAAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATCAAAAATAAAAAACGAGCCGTCTTA
*
12393652 CCATGAAACTTCACGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCAAGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
12393717 TGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCTTATCGATCCACGGCTTGCGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
12393782 ATCCCGTCTCTCTGGCCAGCGTAGTGCCCTCCCG-C-C-CGCCCGCTCGTTTCGTCTCTTGGCTT
651 ATCCCGTCTCTCTGGCCAGCATAGTGCCCACCCGCCTCTCGCCCGCTCGTTTCGTCGCTTGGCTT
* *** *
12393844 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGATAGCAGGATTGG
716 AGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTACGATAGCAGGATTGG
12393909 CAGCACACAGAAGGGGACCCGACCGATCCCCGACCTTCGCATCCCGCCCCTCTGGCTGGCTGAGC
781 CAGCACACAGAAGGGGACCCGACCGATCCCCGACCTTCGCATCCCGCCCCTCTGGCTGGCTGAGC
12393974 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
846 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * *
12394031 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAACACATGCTGGG
* * **
12394095 CTCGGGCATGTTCTGGTGCCGCAT-TTGTCTTCATCGGGGCACCATC-ATCGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCGCATATT-TCTTCATCGGGGCACCATCGCT-GGAGCATCACCGGA
*
12394158 GAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGGCCGGGGGGGTGTGCGCACATGAT
129 GAACCTGACCGACGGCATTAGGGTTCCGGCGATC-GGGGGGGCCGGGGGGGTATGCGCACATGAT
* * *
12394223 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACT
193 GTGCGATGGGTGCTGGTACTT-ACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
12394288 CACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTG-
257 CACA-CCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
12394352 AAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTGGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTATAGCTGAATTTT
* * * ** *
12394416 TTGGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCTGA
386 TTGGTGAATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACGCCCTCCGA
*
12394481 AAAAATTTTAAAAAATCCCGAACCACTAAAAGTTTCAAAAATCATCAAAAATAAAAAACGAGCCG
451 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATCAAAAATAAAAAACGAGCCG
* * * **
12394546 TCTTATCATTAAACTTCAAGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTACCATGAAACTTCAAGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCATAAAAAT
12394611 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
12394676 TGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCCTCTCGCCCGCTCGTTTCGTCGGT
646 TGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCACCCG-CCTCTCGCCCGCTCGTTTCGTCGCT
*
12394741 TGGTTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTT
710 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTT
12394796 GCGGCAGCAT
Statistics
Matches: 686, Mismatches: 70, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
897 3 0.00
898 110 0.16
899 401 0.58
900 47 0.07
901 57 0.08
902 1 0.00
903 67 0.10
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAACACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATATTTCTTCATCGGGGCACCATCGCTGGAGCATCACCGGAGA
ACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTG
CGATGGGTGCTGGTACTTACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTATAGCTGAATTTTTTGGT
GAATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACGCCCTCCGAAAAAA
TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATCAAAAATAAAAAACGAGCCGTCTTA
CCATGAAACTTCAAGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCAGCATAGTGCCCACCCGCCTCTCGCCCGCTCGTTTCGTCGCTTGGCTT
AGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTACGATAGCAGGATTGG
CAGCACACAGAAGGGGACCCGACCGATCCCCGACCTTCGCATCCCGCCCCTCTGGCTGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
Found at i:12395661 original size:26 final size:26
Alignment explanation
Indices: 12395625--12395675 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12395615 TGACTTAGGC
12395625 ATACGGAGTTCATTCCCAATCTAAGT
1 ATACGGAGTTCATTCCCAATCTAAGT
*
12395651 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
12395676 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGT
Found at i:12397461 original size:26 final size:26
Alignment explanation
Indices: 12397432--12397482 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12397422 GTTGACTTAG
* *
12397432 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTACATTCCCAGTCTAA
12397458 GCATACGAAGTACATTCCCAGTCTA
1 GCATACGAAGTACATTCCCAGTCTA
12397483 TGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTACATTCCCAGTCTAA
Found at i:12400104 original size:26 final size:26
Alignment explanation
Indices: 12400057--12400109 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12400047 GTTGACTTAG
** *
12400057 GCATACGGAGTTCATTTTCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12400083 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12400109 G
1 G
12400110 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.