Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 76 of 190
Found at i:12401859 original size:26 final size:26
Alignment explanation
Indices: 12401829--12401881 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12401819 GTTGACTTGG
* * *
12401829 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
12401855 GCATACGAAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
12401881 G
1 G
12401882 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:12403575 original size:26 final size:26
Alignment explanation
Indices: 12403539--12403591 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12403529 GTTGACTTAG
12403539 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12403565 GCATGCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12403591 G
1 G
12403592 ATCAGATCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12404478 original size:26 final size:26
Alignment explanation
Indices: 12404441--12404493 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12404431 GTTGACTTAG
*
12404441 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12404467 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12404493 G
1 G
12404494 ATTGCACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12406250 original size:26 final size:26
Alignment explanation
Indices: 12406214--12406266 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12406204 GTTGACTTAG
12406214 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12406240 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12406266 G
1 G
12406267 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12407146 original size:26 final size:26
Alignment explanation
Indices: 12407110--12407162 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12407100 GTTGACTTAG
*
12407110 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12407136 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12407162 G
1 G
12407163 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12410609 original size:26 final size:26
Alignment explanation
Indices: 12410569--12410624 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12410559 TGGGTTGACT
12410569 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
12410595 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
12410621 TAAG
1 TAAG
12410625 ATCGGATTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:12412178 original size:26 final size:26
Alignment explanation
Indices: 12412126--12412178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12412116 CTTGACTTAG
* *
12412126 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATATAA
*
12412152 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAATATAA
12412178 G
1 G
12412179 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATATAA
Found at i:12413060 original size:26 final size:26
Alignment explanation
Indices: 12413030--12413082 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12413020 GTTGACTTAG
* *
12413030 GCATATGGAATTCATTCCCAGTATAA
1 GCATACGGAATCCATTCCCAGTATAA
* *
12413056 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAATCCATTCCCAGTATAA
12413082 G
1 G
12413083 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATCCATTCCCAGTATAA
Found at i:12417068 original size:27 final size:26
Alignment explanation
Indices: 12417019--12417077 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
12417009 ACCGTTTCTG
* *
12417019 AAAAATTTAAAAAAATCCCGAAACAT
1 AAAAATTTAAAAAAATCACGAAAAAT
* *
12417045 AAAAAGTTTCAAAAAATCATGAAAAAT
1 AAAAA-TTTAAAAAAATCACGAAAAAT
12417072 AGAAAA
1 A-AAAA
12417078 CGAGTCGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.19
27 18 0.67
28 4 0.15
ACGTcount: A:0.64, C:0.10, G:0.07, T:0.19
Consensus pattern (26 bp):
AAAAATTTAAAAAAATCACGAAAAAT
Found at i:12417474 original size:26 final size:26
Alignment explanation
Indices: 12417438--12417493 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
12417428 TGGGTTGACT
12417438 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12417464 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12417490 TAAG
1 TAAG
12417494 ATCGGATCGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:12418381 original size:26 final size:26
Alignment explanation
Indices: 12418345--12418397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12418335 GTTGACTTAG
*
12418345 GCATATGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
*
12418371 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
12418397 G
1 G
12418398 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:12418654 original size:903 final size:901
Alignment explanation
Indices: 12414795--12430436 Score: 18970
Period size: 903 Copynumber: 17.6 Consensus size: 901
12414785 GTTGACTTAG
* ** ** * * **
12414795 GCATATGGAGTTCATTCCCAGTCTAAGATCCCACCAGACCGAGGGTTGTGGCAGCACATCCTATG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
12414860 CTCGGGCATGTGGTGGTGCCTTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* *
12414925 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTTCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
12414990 GATGGGTGCTGG-ACTTGGCCCTTATAAT-GCCCCCTTATCCCTCTTCAAACCTTGAGAACTCAC
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATCAAACCTCGAGAACTCAC
*
12415053 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12415118 GGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** *
12415183 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * *
12415248 ACTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
12415313 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * * * * * * *
12415378 TTGGTATGTAGAAATATAAACATGTACATAAACCCAGCTACCACCCTATCGATACACGGCTTACA
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12415443 CATCCCGTCTCTCTGGCC-G-GTA-TAG--G---GCCTGCTCGCCCGCTCGTTTCGTCAGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGT-GCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * **
12415500 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAAGGCAGCAGGATC
*** * * ** * * * *
12415565 AATAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCTCATCCCACCCCTCTGTCCAGCTGA
778 GGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* ** **
12415630 GCGCCCGTACGCTCGTTTTTTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12415689 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTTCGGCGGCACATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12415754 CTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGACCATGGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
*
12415819 ACCTGACCGGCGTCATTGGGGTTCCGACGATCGGGGGG-CGGGGGGTGTGCGCACATGATGT--G
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
**
12415881 A-GAATG--GG----TGG--------TT-G---------CCTCATC-AACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
12415920 CCGCTTAAAGAGCATTTGACGA-TTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGT-TGAAATG
261 CCCCTTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12415982 TGGACACTTTTTTTC-AATGGT-ACAAAATCGTGTACACTTC-AGTTTTTAGCTGAATTTTTTTG
325 GGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12416044 TGCATACCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACTCCTTCCGAAAA
389 TGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG-AAA
* * ** *
12416108 AAATTTTAAAAAAATCCTGAATCCGCAAAAATTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
452 AAATTTT-AAAAAATCCCGAA-CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
12416173 TCTTGCCATGAAACTTCATGTGAA-GCTTAAAGGGAACCAATGTATGAATTTACAATCCAT-AAA
515 TCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGG-ACCATTGTATGAATTTACAAGCCATAAAA
*
12416236 ATGG-ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCCG
578 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACG
* * * *
12416300 GCTTGCGCATCCCTGTCTCTTTGGCCGGCGTAAGTGCCCGCCTGCCCGTCCGCCCGCCCGTCATT
642 GCTTGCGCATCCC-GTCTCTCTGGCCGGCGT-AGTG-CCGCCCGCCCGCCCGCCCG--C-TCGTT
* * * *
12416365 TCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGCATGCAAGGGTTG
701 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CCAAGGGTT-
* * ** * * * *
12416430 TAGGCAGCAGGATCGACAGC-CATAGAGGGGGACGC-ACCGATCCCCGGCTTGCACAATCCC-AC
764 AAGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGC-ATCCCGCC
* * * * * * * *
12416492 CCTCTGGTCGGCTAAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATATAGAAGTTCAAT
828 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGGAGTTC-A-
*
12416557 TTACCAGTCTAA
890 TTCCCAGTCTAA
* * * * * *
12416569 -CATAACGGAGTTCAATCCCCAGT-TAAGAATCGGAACAGAGGCTGAGGGTTCCGCCAGCACATG
1 GCATAA-GGAGTTC-ATTCCCAGTCTAAG-ATCGG-ACTG-GACCGAGGGTTGCGGCAGCACATG
* * * * * * *
12416632 CTAGGCT-GGGCATGTGCCTGGTG-CACATATTTCCTCGTCGAGGCACCATCAGCCGAAGCAATC
61 CTGGGCTCGGGCATGTG-CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GTCGGAGC-ATC
* *
12416695 ACCGGAGAACCTGA-CGGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCGCAC
123 GCTGGAGAACCTGACCGG-CGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCAC
12416759 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACCTCG
186 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCG
12416824 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGT
250 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
12416888 GTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
315 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
12416952 ATTTTTTTGTGCATGCCAAC-AAAATACAAGGATCACATCTA-CAAGTTTGGGGCC-AAAA-CCG
380 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC-
* * * ** *
12417013 TTTCTG-AAAAATTTAAAAAAATCCCGAAACATAAAAAGTTTCAAAAAATCATGAAAAATAGAAA
444 -TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAAA
12417077 ACGAGTCGTCTTG-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
507 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
12417141 ATAAAAATGGCATTGGCA--TAGAAATATGAAGATGTGCCATAAA-CCACCTACCACCCTATCGA
572 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC-TAAACCCACCTACCACCCTATCGA
* * * * ** *
12417203 TCCGCGGACTTGTGCATCCCATCTCTCTGGCCGGCTGTTGTGCCTGCTTGCCCGCCCGCCCCCTC
636 TCCACGG-CTTGCGCATCCCGTCTCTCTGGCCGGC-GTAGTGCC-GCCCGCCCGCCCGCCCGCTC
* * * ** * *
12417268 ATTTTGTC-ATTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGAATTGGATCAGACCGA-GG
698 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGATCGGACCAAGGG
* * * *
12417330 TTACGGCAGCA-GATCGGCAACATGTAGAGGGGGGAAC-CTGGTCCGAT-CCCGGCTTGCGCAT-
762 TTAAGGCAGCAGGATCGGCAGCACGCAGA-GGGGG-ACTC-GG-CCGATCCCCGGCTTGCGCATC
* *
12417391 -C-CCCCTCTGG-CGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTT
823 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
12417453 CATTCCCAGTCTAA
888 CATTCCCAGTCTAA
* * **
12417467 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACGGAGGGTTGCAACAGCACATGCTGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
* *
12417531 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCG-TAGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGA
* * * *
12417595 GAACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGAGGCCGGGGGGTGTGCACACATGATCT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGT
* *
12417660 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12417725 CACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12417790 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12417855 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * *
12417920 AATTTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC
453 AA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
12417985 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12418050 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
12418115 GGCATCCTGTCTCTTTGTCCAGCGTAGTGTCAGCCTGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
*
12418180 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAAGGCAGCAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAAGGCAGCAGGA
** * * * * * * * *
12418245 TCCACAGCACACAGACGGGGACTTGGCCGATCCTCGGCTTACGCATCTCACCCCTCTGGCCGACT
776 TCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
12418310 GAGCGCTCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12418371 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAACACATGCTAGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12418436 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * * ** * *
12418501 ACCTGACTGGCGACTTTGGGGTTCCGGTGATCGGGGGGCCGGGAGGTGTGCGCACATGATGTACG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
12418566 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
12418631 CCCCTTGATGACCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
12418696 CGACACCTTTTTT-GAATGGTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTTTTTGT
326 GGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
12418760 GCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
** *
12418825 TTTTAAAAAATCCCCGAACCGCAAAAAGTTTTGAAAATCGAGAAAAATAGAAAACGAGTCGTCTT
455 TTTTAAAAAAT-CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
12418890 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTCGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12418955 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGGG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
12419020 CATCCTGTCTCTTTGTCCAGCGTAGTGTCAGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
12419085 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATATCGGACCAAGGGTTGAGGTAGCAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAAGGCAGCAGGATC
* * * * * * *
12419150 GACAGCACACAGAGGGGGACTTGGCCGATCCTCGGCTTGCGCATCTCACCCCTCTGGCCGACTGA
778 GGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
12419215 GCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12419274 GCATAAGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGGCAACACATGCTAGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12419339 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * * ** *
12419404 ACCTGACTGGCGACTTTGGGGTTCCGGTGATCGGGGGGCCGGGAGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
12419469 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
12419534 CCACTTAAAGAGCATTTGAGATTTTACAGTTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
12419599 GGACACTTTTTTCACATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
12419664 CATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGACCAAAAATCCTTACGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
* * **
12419729 TTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * **
12419794 TATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-TAGGAAGTAAAAATGGCAT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGCAT
* *
12419858 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
12419923 ATTCCGTCTCTCTGGCTGGCATAGT---GCCCGCCCGCCCGCCCGCCTCGTTTTGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCG-CTCGTTTCGTCGGTTGGCT
* ** * * * **
12419985 TAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCG
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAAGGCAGCAGGATCG
* * * * *
12420050 GTAGCACGTAGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCGGGCTGAG
779 GCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
12420115 CACCTGCACGTTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
844 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
12420173 GCAT-AGGAGTTCATTCCCAGTCTAATATCGGACCGGACCAAGGGTTCCAACAGCACATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
12420237 CTCGAGCATTTGCTGGTGTCGCATTTTTCTTCGCCAGGTCACCATCATCGGAGCATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* * * **
12420301 AACGTCACCGACGGCATTGGGGTTCCGATAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
12420366 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
12420431 ACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAATGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12420496 GGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12420561 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCGAAAATCATTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * *
12420626 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT-ACAAAATAAAAAACGAGTCGTCT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA-AAAATAGAAAACGAGTCGTCT
* * * ** *
12420690 TCCCTTGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGTTTTTACAAGCCATTAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12420755 ATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * * * *
12420820 GCATCCCGTCTCTCTGGCCGACGTGGTGCCCGCTTGCCCGCCTGCTCGTTTGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * **
12420885 CTTAGGCATACAGACTTCATTCCCACTCGAAGATCAGACCGGGCTGAGGGTTACA-GCAGCAGGA
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTA-AGGCAGCAGGA
** * * * *
12420949 TCGATAGCACGCAGA-GGGGAC-CTGGCCAATCCCCAGCTTACGCAT-CCACCCCTCTGGCCGGC
776 TCGGCAGCACGCAGAGGGGGACTC-GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
12421011 TGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12421073 GCATATGGAGTTCATTCCCAGTCTAAGATTGGA-TCAGACCGAGAGTTGCGGCAGCACATGCTGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
* *
12421137 GCTCGGGCATGTGTTGGTGTCGC-TTTTTCCTTCGTCGGGGCACCA---TC---G--T--C-GGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTT-CTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGA
* * * *
12421190 GAACCTGA-CGGCGGCATTGCGATTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
12421254 GCGATGGGTGCTGGTATTTGGTCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12421319 CACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12421384 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
12421449 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCATCCGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAA
** * ** * *
12421513 AAATTTTAAAAAATCTTGAACCGCTAAAAGTTTTGAAAATCATGAAAAATGGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
12421578 TTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCGTCGTACGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12421643 AATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
12421708 GGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTTGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *** *
12421773 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATATCGGACCAAGGGTGGTGGTAGCAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAAGGCAGCAGGA
* * * *
12421838 TCGGCAGCACGTAGAGGGGCACTCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
776 TCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * **
12421903 GAGCACCCGCACGCTCGTTTTGTGGGTTGACCTAGGCATAAGGAGTTCATTCGTAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12421964 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12422029 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* * * * *
12422093 AACCTGA-CGGCGACATTGCGGTTTCGACAATCGGGGGGGCCGGGGGGGTGTGCCCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * *
12422157 GTGATGGCTTCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12422222 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12422287 TGGGGACACTTTTTTCAATTAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
12422352 GTGCATGCCAAAAAAAATACAGGGATCACGTTTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAA
* * * *
12422416 AAATTTTAAAAAATCTCGAACCGCTAAAAGTGTT-GAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGT-TTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
12422480 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTCGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
12422545 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGAC-GCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** *
12422609 ACGCATCCCGTCTCTCTGGCCGGCATAGTGCTCGCCCGCCCGCCCGTTCGCTCGTTTCGTCGATT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * *** * *
12422674 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGGTGGTGGTAGTAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAAGGCAGCAGG
* * * * *
12422739 ATCGGTAGCACGTAGAGGGGCACTCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGC
775 ATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * **
12422804 TGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCGTAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
12422866 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTT---ATAGCACATGCTAGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12422928 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
** ** * * *
12422992 AACCTGA-CGGCGGCATTACGGTTTTGGCGATCGGGGGGCCGGGGGGGTTTGCCCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
12423056 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12423121 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAA
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAA
12423186 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
12423251 GTGCATGCCAA-AAAAATACAAGGATCACATCTACCAAGTTTGGTGCCAAAAATCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * *
12423315 AATTTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTTAAAAATAGAAAACGAGTCATC
453 AA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12423380 TTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12423445 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
12423510 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCTCGCCCGGCCGTTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * **
12423575 GCTTAGGCATACGAAGTTCATTGCTAGTCTAAGATCGGATCGGA-CGAGGGTTGCGGCAGCAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAAGGCAGCAGGA
* * * * * * **
12423639 TTGGCAGCATGCAGAGGGGGACCCGGTCGATTCCCTGGCTTGCGCATTCCTTCCCTCTGGCCGGC
776 TCGGCAGCACGCAGAGGGGGACTCGGCCGA-TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
12423704 TGAGCACCCGCACACAT-GTTTCGTGGGTTGAC-T-----TA--G-G--------CA---T-A
840 TGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12423745 -C---A-GAGTTCATTCCCAGTCTAAGATCGGACCGG-GCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12423804 CTCGGGCATGTGTTGGT-CCGCAGTTTTCTTC-CCTGGGGCACCA---TC---G--T--C-GGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCTGGAG
* * * * *
12423856 AACCTGACCGACGACATTGGGGTTTCGATGATCGGATGGGCCGGGGGGGGTGTGCGCTTACATGA
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCC--GGGGGGTGTGCGC--ACATGA
* * * *
12423921 TGTGCGATAGGTGCTGGTACTTGGACCTTATATTTGCCCCCTATCCCTCATCAAACCTTGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
12423986 TCACACCCCCTTAAAAAGCTTTTAAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * * * * *
12424051 AAAT-CGGACACTTTTTTGAAAAGGTCAAAAAATCTTATACACTTCGAGTTTTTGGCTTAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
12424115 TTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTCCTTCTG-
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * * * *
12424179 AAAAATTTTAACAAATCCC-AACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCA
450 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
12424243 TCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
12424308 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * * *
12424373 TACGTATCCCGTCTCTCTGGCCAGCGTAGT---GCCCACCCACCTGCCCGCTCATTTCATTGGTT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
12424435 GGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGAACCGAGGGTT-----------
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAAGGCAGCAGG
* * * * *
12424489 A-CGGCAGCAAGCAGAGGGGGAC-CTGTCCGATCCCTGACTTGCGCATCCCGCCCCTCTAGCCGG
775 ATCGGCAGCACGCAGAGGGGGACTC-GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
12424552 CTGAGCGCCCGCACGCTC----C-T--TTTAACTTAAGCATACGGAGTTCATTCCCAGTCTAA
839 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12424608 G-AT---CAG---A----C---C--AGA-C---C---A---AGGGTTGTGGCAGCACATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12424647 CT-TGGCATGTGCTGGTGCTGTATTTTTCTTCG-CAGGGGCACCATCGT-----CA------GAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCTGGAG
* * * * * *
12424699 AACCTGACCGGTGACATTAGGGTTCCGCCGATC-----G--GGGGGGTGTGAGCACAAGATGTGC
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * ** *
12424757 TATGGTTGCTGGTACTTGAG-CCTTAT-TTGGCCCCCTATAACTCATTAAACCTCGAGAACTCAC
195 GATGGGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
12424820 ACCCTCTTAAAAAGCATTTGAGATTTTGCAGGTTTGCTGCCGGTAGCCATTAAAGTGTTTGATAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12424885 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTCTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12424950 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCC-GAAATGCTTTCCGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCGAAAA
* * * *
12425014 AATTTTAAGAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGGCATCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
12425079 TGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12425144 ATTCGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12425209 GCATCCTGTCTCTTTGGTCGGCGTAGTGCCCGCTCGCCCGCCCCGCCCGCCCGCTCGTTTCATTG
648 GCATCCCGTCTCTCTGGCCGGCGTAGT----GC-CGCCCG-CCCGCCCGCCCGCTCGTTTCGTCG
* * * * * * * *
12425274 GTTGGCTTAGGTATACGAAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTACGGTAG-
707 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAAGGCAGC
* * * *
12425338 AGGATCGGCAGCACGCAGAAGGGGACTCGGTCGATCCCCGGCTTTCGCATCCCGTCCCTCTGGCC
772 AGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * * *
12425403 AGCTGAGCGCCCGCGCGCTCATTTCGTGAGTTGACTTAAGCGTACGGAGTTCATTCCTAGTCTAA
837 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12425468 GCATATGGAGTTCATTCCCAGTCTAACATTGGATTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** ** * * * *
12425533 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGTGCCATCGCCGGAACATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
** * *
12425598 ACCTGACCGGTTGCATTGGGGTTCCAACGAT--------CGGAGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * * *
12425655 ATGGGTGCTGGTACTTGGCCTTTATATTAGCCCCCTATCGCTCATCAAACCTCCAGAACTCACAG
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
12425720 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
12425785 GGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
12425850 CTTGCAAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
* * * *
12425915 TTTAACAAATCCC-AACTGCAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGC
456 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
12425979 CATGAAACTTCACGAGAAGGCTTAAGGGA-CATTGTATGAATTTACAAGCCATAAAACTGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
12426043 GGCACACAAAAAATATGAAAGATGTGCCTAAACCGCACCTAACACCCTATCGATCCACGGCTTGC
586 GGCACGC-AGAAATATG-AAGATGTGCCTAAACC-CACCTACCACCCTATCGATCCACGGCTTGC
12426108 GCATCCCGTCTCTCGTTGG-C-G-GTAGTGCCCGCCC-CCCG-CCG-CCGCTCGTTTCGTCGGTT
648 GCATCCCGTCTCTC--TGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
*
12426167 GGCTTAGGCATATGGAGTTCATT-CCAG--TAA-ATCAGAT-GGACCGAAGGGTT---GCA-CGA
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC-AAGGGTTAAGGCAGC-A
* * *
12426223 GGAT-GACAGCA-GCAGA-GGGGAC-CGTG--GATCCCCGACTTGCACAT-CCGCCCCTC--GCC
773 GGATCGGCAGCACGCAGAGGGGGACTCG-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
12426279 GG-T-AGCTG-CCGCA-GCTCGTTTCATGGGTTG--TTTGGC-TA-GGA-TT-A-----A-TCTT
837 GGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
12426328 A
901 A
* * * * *
12426329 G-GT-ACGAGTTCATT-CCAGTCTAAGATCAGA-TCAGACC-A-GGTTG-TGCAGCACATGCT-G
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
*
12426386 GCTCGGGCATTGTGCTGGTG-C-CATTTTTCTTCG-CAGGGCA-CATCGTCGGAGCATCGC-GGA
65 GCTCGGGCA-TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGA
* * * *
12426446 GAA-CTGA-C-GCGGCATT-GGGTTCCGA-GAATC-GGGGGACAGGGGGTGTGCACACATGACGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACG-ATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
12426505 GCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12426569 CAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12426634 TGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTTAATTTTTT
323 TGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
12426699 TGTGCTATGCCAAC-AAAATAAAAGGATCAACGTCTGCCAAGTTTTGGGCCAAAACTCCTTCCGA
387 TGTGC-ATGCCAACAAAAATACAAGGATC-ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * ** * *
12426763 AAAAATTTTAAAAAATCTCGAACCG-AAAAAATTTTGAAAATCGTGAAAAATAGAAAACGACTGG
450 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
12426827 TATTGCCATGAAACTTCATGTGAAGGCTTAAGAGACCATTTGTATGAATTTACAAGCCATAAAAA
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TTGTATGAATTTACAAGCCAT--AAA
*
12426892 AATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCAC-
577 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
12426955 GCTTATGC-CATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGCCCGCTCGTT
642 GC-T-TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCG-C-C-CGCCCGCTCGTT
* * * * * * * *
12427019 TCATTGGTTGGCTTAGGTATACGAAGTTCATTCCCAGTGTAAGATCAGACCAGACCAAGGGTTAC
701 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAA
* * * * *
12427084 GGTAG-AGGATCGGCAGCACGCAGAAGGGGACTCGGTCGATCCCCGGCTTTCGCATCCCGTCCCT
766 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * * * *
12427148 CTGGCCAGCTGAGCGCCCGCGCGCTCATTTCGTGAGTTGACTTAAGCGTACGGAGTTCATTCCTA
831 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
12427213 GTCTAA
896 GTCTAA
* * * * * *
12427219 GCATATGGAGTTCATTCCCAGTGTAATATTGGATTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** * * * *
12427284 CTCGGGCAGGTGCTGGTGCCATATTTTTCTTC-ACTGGGGTGCCATCGCCGGAACATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCTGGAG
** ** * *
12427348 AACCTGACCGGTTGCATTGGGGTTCC-A--AT-----GATCGGAGGGTGTGCGCACATCATGTGC
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
12427405 GATGGGTGCTGGTACTTGGCCTTTATATTAGCCCCCTATCGCTCATCAAACCTCCAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
12427470 GCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12427535 GGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
12427600 GCTTGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * * *
12427665 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAATATCGTGAAAAATAGAAAATGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
12427730 CCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCA
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCA
**
12427795 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
12427860 CATCTCGTCTCTCTGGCCAGCGTAGT---GCTCGCCCGCCCGCCCGCTCGTTCCGTCGGTTGGCT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
12427922 TAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGA-CTGGATCGAGGGTTACA-GTAGTAGGAT
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCAAGGGTTA-AGGCAGCAGGAT
* * * ** * * * *
12427985 CAGCAGCATGCAGAGGGGGACCCGATCGATCCCCGTCTTGCTCATTCCGCCCCTCTGGCCAGCTG
777 CGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
12428050 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
12428110 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12428175 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * ** * **
12428240 ACCTGACCGACGGCATTGGGGTTGCGGTGATCGGGTGGGCTGGAGGGGTGTGCGGGCATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGG-GGGGTGTGCGCACATGATGTG
* * * *
12428305 CGATGGGTGCTAGTACTTGACCCTTATATTGGCCCCCTATCCCTTAGCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12428370 ACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12428435 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
12428500 TGCACGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * *
12428565 ATTTTAAAAAATCCCAAACC-CCAAAA-TTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
12428628 GCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
12428693 TTGGCACACATAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * *
12428758 CATCCCGTCTCCCTGGTTGACGTAGT---GCCCGCCCGCCCGCCCACTCGTTTCGTCGGGTGGCT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * **
12428820 TAGGCATATGGAGTTCATTCATAGTCTAAGATCAGATTGGACCAAGGGTTGTTGGCAGCAGGATC
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTT-AAGGCAGCAGGATC
* * * * * * *
12428885 GGCAGTAGGTAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCT-GCCGGCTGA
778 GGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
12428949 GCTG-CCGCATGCTCGTTTCATGGGTTGTCTTAGGCATACGGAGTTAATTCCCGGTCTAA
843 GC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
12429008 GCGTACGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACCAAGGGTTGTGCCAGCACATGCTGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
12429072 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCAGGGCACCATCATCGGAGCATCG-TCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGA
* * * * * *
12429136 GAACCTGACCGACGGCATTGGGGTTCCGATGATC-GGGGGACAGGGGGTGTGCACACATGACGTG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
12429200 CGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12429264 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12429329 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTTAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
12429394 TGTATGCCAACAAAAATAAAAGGATCACGTCTGCCAAGTTTTGGGG-CAAAAACTCCTTCCGAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAAA-TCCTTCCGAAA
* * ** * * *
12429458 AAATTTTAAAAAATCTCGAACCG-AAAAAATTTTGAAAATCGTGAAAAATAGAAAACGACTGGTA
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
12429522 TTGCCATGAAACTTCATGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12429587 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
12429652 TGCATCTCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCTGCCAGCCTGCTCGTTTCATCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
12429717 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCAGATCGAGGGTTATGGTAGCAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAAGGCAGCAGGA
* * * * * * * * *
12429782 TCAGCAACACGAAAAGAGGGACTCGGCCGATCCCCGGCTTGTGCACCCCGCCCCTTTGGCTGGCT
776 TCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
12429847 GAGAGCCTGCACGCCCGTTTCGGGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** * * * * *
12429908 GCATACGGAGTTCATTCCTAGTCTAAGATTAAATTGGACCGAGGGTTACAGTAGCACATGCTAGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12429973 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT-TGGG-----T--T---AGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* ** *
12430027 ACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCCTGGGGTGTACGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
12430092 GATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCTCA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12430157 CCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAACG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
**
12430222 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTCAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** *
12430287 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * * * *
12430352 TTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGCGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
12430417 CCAGGAAACTTCACGTGAAG
520 CCATGAAACTTCACGTGAAG
12430437 ATGTGCCTAA
Statistics
Matches: 12932, Mismatches: 1384, Indels: 866
0.85 0.09 0.06
Matches are distributed among these distances:
830 92 0.01
831 135 0.01
832 19 0.00
833 202 0.02
837 1 0.00
841 4 0.00
842 88 0.01
843 77 0.01
844 1 0.00
845 2 0.00
846 11 0.00
847 6 0.00
848 5 0.00
849 47 0.00
850 30 0.00
851 17 0.00
852 115 0.01
853 200 0.02
854 169 0.01
855 44 0.00
856 44 0.00
857 13 0.00
858 35 0.00
859 12 0.00
860 36 0.00
861 143 0.01
862 80 0.01
863 82 0.01
864 118 0.01
865 319 0.02
866 31 0.00
867 93 0.01
868 60 0.00
869 137 0.01
870 9 0.00
871 8 0.00
872 16 0.00
873 29 0.00
874 48 0.00
875 28 0.00
876 40 0.00
877 122 0.01
878 53 0.00
879 37 0.00
880 29 0.00
881 22 0.00
882 42 0.00
883 50 0.00
884 48 0.00
885 7 0.00
886 59 0.00
887 40 0.00
888 3 0.00
889 628 0.05
890 145 0.01
891 511 0.04
892 291 0.02
893 78 0.01
894 492 0.04
895 206 0.02
896 336 0.03
897 304 0.02
898 1248 0.10
899 1517 0.12
900 543 0.04
901 523 0.04
902 646 0.05
903 1590 0.12
904 247 0.02
905 42 0.00
906 14 0.00
907 1 0.00
908 2 0.00
909 33 0.00
910 77 0.01
911 42 0.00
912 56 0.00
913 17 0.00
914 45 0.00
915 84 0.01
916 27 0.00
917 29 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAAGGCAGCAGGATCGGC
AGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12419277 original size:26 final size:26
Alignment explanation
Indices: 12419248--12419300 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12419238 GTTGACTTAG
*
12419248 GCATATGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
*
12419274 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
12419300 G
1 G
12419301 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:12420177 original size:26 final size:25
Alignment explanation
Indices: 12420147--12420197 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
12420137 GTTGACTTAG
12420147 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATA-GAAGTTCATTCCCAGTCTAA
*
12420173 GCATAGGAGTTCATTCCCAGTCTAA
1 GCATAGAAGTTCATTCCCAGTCTAA
12420198 TATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (25 bp):
GCATAGAAGTTCATTCCCAGTCTAA
Found at i:12420414 original size:899 final size:900
Alignment explanation
Indices: 12411185--12437368 Score: 30800
Period size: 898 Copynumber: 29.5 Consensus size: 900
12411175 CCCGGTTTAT
* * * * * * * * *
12411185 GCATCCCACCCCTCTTGCTGGTTGAGTGCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATATG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
12411250 GAGTTCATTCCCAGTCTAAGCATACGGAG-----T----G--TAAGATCGGACCGGACCAAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * * *
12411304 TACGGTAGCACATGCTGGGCTCAGCCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGCACCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* *
12411368 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCAGGCA
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GG-G
* * *
12411433 GGGTGTGCGCACATGATTTACGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
259 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
12411498 ATCAAGCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTA
324 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
12411563 GCCATTAAATTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
389 GCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* ** *
12411627 GTTTTTAGCTGAATTGTTTTGTTAATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGG
453 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
** * * **
12411692 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCG-TAAAACTTTTGAAAA-CGTGAA
518 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* * *
12411755 AAATAGAAAATGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAAT
583 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
12411820 TTACAAGCCATAAAAATGGTATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCAC
648 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
*
12411885 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGGGCGTAGT----GCCCGCCCGCCCG-
713 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC
* * * * ** * *** *
12411945 CTCATTTCGTTGATTGGCTGAGGCATACAAAGTTCATTCCTAGTCTAAGATGTTACCAGACCAAG
778 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * ** * *
12412010 GGTTGCAGAAGCAAGATCGACAGCACGCAGAGGAGGACCCGATCGATTCCCGGCTTCC
843 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * * * * *
12412068 GCATCCCACCCCTCTAGCCAGCTGAGCGCCCGCACGCTTGTTTCATGGCTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * *
12412133 GAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTATAAGATCGGATCGGACTGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * * * *
12412198 TGTGACAGCACATGCTAGGCTCGGCCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * *
12412263 GTCGGAGCATCGTCGGAGAACCTGACTGGCGGGATTGGGGTTCTGACGATCAGGGGGGTCGGGGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * *
12412328 GTGCGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAG
261 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
12412393 CAAACCTCGAGAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
326 CAAACCTCGAG-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
12412458 CCACTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCATAAAATCTTGTACACTTTGAGT
390 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
12412522 TTTTAGCTGAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
455 TTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** *
12412587 CCAAAAATCCTTTTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAA
519 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* *
12412652 AATAGAAAACGAGTCGTCTTGCCATGAATCTTCACGTGAAGGCTTAAGGGACCATTGTATCAATT
584 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* ** * *
12412717 TACAAGCCATGAAAATGGCATTGGCACACAGAAATATGAAAATGTGCCTAAACCCACCAACCACC
649 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * *
12412782 CGATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAATGCCTGTCCACCCGTCCGCC
714 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-C
* * * *
12412847 TGCTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCG
778 --CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * * **
12412912 AAGGTTACGGCAGCAAGATCGGTAGCACGGAGAGGGGGAC-CTGATCGATCCCCGGCTTGC
841 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTC-GGCCGATCCCCGGCTTGC
* * * * * *
12412972 GCATCCCGCCCCTCTGTCCGGCTGAGCGCTCGTACGCTTGTTTCATGGGTTGACTTAGGCATATG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
12413037 GAATTCATTCCCAGTATAAGCATACGGAGTCCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * * * * *
12413102 TACGGCAGCACATGAT-GGATAAGGGTATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCAT
131 TGCGGCAGCACATGCTGGGCT-CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * *
12413166 C-GCTGGAGTATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGA
195 CATC-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-
* * * * * *
12413230 GGTGGTGTTCGTACATGATGTGTGATGGCTGCTGGTGCTTGGCCCTTATATTAGCCCCCTATCCC
258 GG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
12413295 TAATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
322 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
12413360 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCG
387 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
12413425 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAGGTTTGG
452 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * *
12413490 GGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAT-CTGAAACTGTAAAAGGTTTCAAAAATCGTG
517 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG-AACCGCAAAAAGTTTCAAAAATCGTG
12413554 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
581 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
12413619 ATTTACAAGCCATAAAAATAGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
646 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
12413684 ACCCTATCGATCCACGGCTTGTGCATTCCGTCTCTCTAGCCGACGTAGTGCCCGTCCGTCCACCC
711 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* ** * * *
12413749 GCCT-G-TTCGT--TTTGTCGCTTAGGCATACTTAGTTCGTTCCCAGCCTAAGAT-TGTACCAGA
776 GCCTCGTTTCGTCGGTTG--GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGA
* * * * *
12413809 TCGAGGGTTGCGGTAGC---AT-----GCA---A-AGGGGGACCCAGCCGATCCCTGGCTTGC
838 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* *
12413860 ACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGG----C-
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
12413920 -A--T-A-T----G-----G--T-----GTTCATTCCCAATCTAACATCGGACCGGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
12413964 TACGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * *
12414029 -TCCGGAGCATCGTCGGAGAACATGACCGGCGGCATTGGGGTTCTGGCGATCGGGAGGGCCGGGG
196 AT-CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * *
12414093 GCGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCACTC
260 G-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
12414158 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
324 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
12414223 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
389 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
12414288 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
454 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * ** *
12414353 CCAAAACTCCTTCCGAAAAAACTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAA
519 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* *
12414418 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTTTATGAATT
584 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
12414483 TACAAGCCATTAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCC
649 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
12414548 CTATCGATCCACGGCTTTCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCC
714 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC
* * ***
12414613 -CGCTCTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCG
779 TCG---TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * ** *
12414677 AGGGTTGCAGTAGCAGAATCGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGT
841 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* ** * * * *
12414737 GCATCCCGCCCCTTTGGCCGATTGAGCTCCCACACGCTTGTTTCGTGGGTTGACTTAGGCATATG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
12414802 GAGTTCATTCCCAG--T---C-TA---AG---A-TCCCA--C------C--A---GACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * ** * **
12414841 TGTGGCAGCACATCCTATGCTCGGGCATGTGGTGGTGCCTTATTTTTCTTCGTCGGGGCACCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * *
12414906 GTCGGAGCATCGTTGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * *
12414971 GTGTTCGCACATGATGTGCGATGGGTGCTGG-ACTTGGCCCTTATAAT-GCCCCCTTATCCCTCT
261 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCA
* *
12415034 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
12415099 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGT
390 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
12415164 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
455 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
12415229 CAAAACGCCTTTCGAAAAAACTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAA
520 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
12415294 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
585 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * * * * * *
12415359 AGAAGCCATAAAAATGGCATTGGTATGTAGAAATATAAACATGTACATAAACCCAGCTACCACCC
650 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * ** * *
12415424 TATCGATACACGGCTTACACATCCCGTCTCTCTGGCCGGTATAG-G---GCCTGCTCGCCCG-CT
715 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCT
*
12415484 CGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
780 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
*** * * **
12415549 TTGCGGCAGCAGGATCAATAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGC
845 TTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * * * * ** **
12415605 TCATCCCACCCCTCTGTCCAGCTGAGCGCCCGTACGCTCGTTTTTTGGGTTGACTTAGGCATATA
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
12415670 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * * *
12415735 TTCGGCGGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * *
12415800 GTCGGACCATGGCCGGAGAACCTGACCGGCGTCATTGGGGTTCCGACGATC-GGGGGG-CGGGGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
**
12415863 GTGTGCGCACATGATGT--GA-GAATG--GG----TGG--------TT-G---------CCTCAT
261 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
12415901 C-AACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGACGA-TTTACAGGTTTGCTGCCAGTAG
326 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAG
* *
12415964 CCATT-AAGTGT-TGAAATGTGGACACTTTTTTTC-AATGGT-ACAAAATCGTGTACACTTC-AG
390 CCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
12416024 TTTTTAGCTGAATTTTTTTGTGCATACCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
454 TTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * ** *
12416089 GCC-AAACTCCTTCCGAAAAAAATTTTAAAAAAATCCTGAATCCGCAAAAATTTTTGAAAATCAT
518 GCCAAAACTCCTTCCG-AAAAAATTTT-AAAAAATCCCGAA-CCGCAAAAAGTTTCAAAAATCGT
* *
12416153 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAA-GCTTAAAGGGAACCAATGTA
580 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGG-ACCATTGTA
* *
12416217 TGAATTTACAATCCAT-AAAATGG-ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
643 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
12416280 ACCACCCTATCGATCCGCCGGCTTGCGCATCCCTGTCTCTTTGGCCGGCGTAAGTGCCCGCCTGC
708 ACCACCCTATCGATCC-ACGGCTTGCGCATCCC-GTCTCTCTGGCCGGCGT-AGTG--C-CC-GC
* * *
12416345 CCGTCCGCCCGCCCGTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
766 CCGCCCGCCCG-CC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * ** * *
12416410 CAGACC-GCATGCAAGGGTTGTAGGCAGCAGGATCGACAGC-CATAGAGGGGGACGC-ACCGATC
829 CAGACCAG-A-CCGAGGGTTG-CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATC
12416472 CCCGGCTTGC
891 CCCGGCTTGC
* * * * * * * *
12416482 ACAATCCC-ACCCTCTGGTCGGCTAAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATAT
1 GC-ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-
* * * * *
12416546 AGAAGTTCAATTTACCAGTCTAA-CATAACGGAGTTCAATCCCCAGT-TAAGAATCGGAACAGAG
64 CGGAGTTC-A-TTCCCAGTCTAAGCAT-ACGGAGTTC-ATTCCCAGTCTAAG-ATCGG-ACCG-G
* * * * * * * *
12416609 GCTGAGGGTTCCGCCAGCACATGCTAGGCT-GGGCATGTGCCTGGTG-CACATATTTCCTCGTCG
122 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG-CTGGTGCCGCATTTTTCTTCGTCG
* * * **
12416672 AGGCACCATCAGCCGAAGCAATCACCGGAGAACCTGA-CGGACGGCATTGGGGTTCCGACGATCG
186 GGGCACCATCA-TCGGAGC-ATCGTCGGAGAACCTGACCGG-CGGCATTGGGGTTCCGACGATCG
*
12416736 GGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
248 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
12416801 CCCTATCCCTCATCAAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GT
313 CCCTATCCCTCATC-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
12416865 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTT
377 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
12416929 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACAAGGATCACATCTA
442 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * **
12416993 -CAAGTTTGGGGCCAAAAC-CGTTTCTG-AAAAATTTAAAAAAATCCCGAAACATAAAAAGTTTC
507 CCAAGTTTGGGGCCAAAACTC-CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
*
12417055 AAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG-CATGAAACTTCACGTGAAGGCTTAAGGGA
571 -AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
12417119 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT--AGAAATATGAAGATGTGCCATA
635 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC-TA
* * * *
12417182 AA-CCACCTACCACCCTATCGATCCGCGGACTTGTGCATCCCATCTCTCTGGCCGGCTGTTGTGC
699 AACCCACCTACCACCCTATCGATCCACGG-CTTGCGCATCCCGTCTCTCTGGCCGGC-GTAGTGC
* * *
12417246 CTGCTTGCCCGCCCGCCC-CCTCATTTTGTC-ATTGGCTTAGGCATAC-GAGTTCATTCCCAGTC
762 C--C--GCCCGCCCGCCCGCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * * * * *
12417308 TAAGAATTGGATCAGACCGA-GGTTACGGCAGCA-GATCGGCAACATGTAGAGGGGGGAAC-CTG
823 TAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGGGG-ACTC-G
12417370 GTCCGAT-CCCGGCTTGC
884 G-CCGATCCCCGGCTTGC
* *
12417387 GCAT--C-CCCCTCTGG-CGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
12417448 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACGGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
** *
12417513 TGCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * *
12417578 GTTGGAGCATCGTAGGAGAACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGAGGCCGGGGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * *
12417643 GTGTGCACACATGATCTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
261 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
12417708 CAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGC
326 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
12417773 CGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
391 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
12417838 TTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
456 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
12417903 AAAAATCCTTCCAAAAAAATTTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATTGTGAAAA
521 AAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
12417968 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
585 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
12418033 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
650 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
12418098 TATCGATCCTCGGCTTGGGCATCCTGTCTCTTTGTCCAGCGTAGTGTCAGCCTGCCCGCCTGCCC
715 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CC-GCCCGCCCGCCC
* * * *
12418163 G-CTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCA
776 GCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
** ** * * * * *
12418227 AGGGTTAAGGCAGCAGGATCCACAGCACACAGACGGGGACTTGGCCGATCCTCGGCTTAC
841 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * * * * *
12418287 GCATCTCACCCCTCTGGCCGACTGAGCGCTCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
12418352 GAGTTCATTCCCAATCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * * *
12418417 TACGGCAACACATGCTAGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * ** *
12418482 GTCGGAGCATCG-CTGGAGAACCTGACTGGCGACTTTGGGGTTCCGGTGATC-GGGGGGCCGGGA
196 ATCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
*
12418545 GGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
12418610 TCAAACCTCGAGAACTCACACCCCCTTGATGACCATTTGAGATTTTACAGGTTTGTTGCCAGTAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
12418675 CCATTAAAGTGTTTGAAATGGCGACACCTTTTTT-GAATGGTCACAAAATCTTGTACACTTTGAG
390 CCATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
12418739 TTTTTTGCTGAATTTTTTTGTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGG
454 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * ** *
12418804 CCAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCCCGAACCGCAAAAAGTTTTGAAAATCGAGAA
519 CCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* *
12418869 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTCGTATGAAT
583 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
12418934 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
648 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * *
12418999 CCTATCGATCCTCGGCTTGGGCATCCTGTCTCTTTGTCCAGCGTAGTGTCAGCCCGCCCGCCTGC
713 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--GT--GCCCGCCCGCCCGC
* * *
12419064 CCG-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATATCGGAC
774 CCGCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * *
12419128 CAAGGGTTGAGGTAGCAGGATCGACAGCACACAGAGGGGGACTTGGCCGATCCTCGGCTTGC
839 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * * * * *
12419190 GCATCTCACCCCTCTGGCCGACTGAGCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
12419255 GAGTTCATTCCCAATCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
12419320 TGCGGCAACACATGCTAGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * ** *
12419385 ATCGGAGCATCG-CTGGAGAACCTGACTGGCGACTTTGGGGTTCCGGTGATC-GGGGGGCCGGGA
196 ATCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
12419448 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
12419513 TCAAACCTTGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGTTTTGCTACCAGTAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
12419578 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCACATGGTAACAAAATCTTGTACACTTCGAGT
390 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
12419643 TTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGAC
455 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * **
12419708 CAAAAATCCTTACGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAA
520 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
*
12419773 ATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
585 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* ** *
12419838 A-TAGGAAGTAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
650 ACAAGCCA-TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
12419902 CTATCGATCCACGGCTTGCGCATTCCGTCTCTCTGGCTGGCATAGTGCCCGCCCGCCCGCCCGCC
714 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC
* * **
12419967 TCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGG
779 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * *
12420032 GTTGCGGCAGCAGGATCGGTAGCACGTAGAGGGGGACTCGGTCGATCCCCGACTTGC
844 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * * * * *
12420089 GCATCCCGCCCCTCTGGCGGGCTGAGCACCTGCACGTTCATTTCATGGGTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
12420154 AAGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAATATCGGACCGGACCAAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* ** * * * * * *
12420218 TCCAACAGCACATGCTGGGCTCGAGCATTTGCTGGTGTCGCATTTTTCTTCGCCAGGTCACCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * **
12420283 ATCGGAGCATCGTCGGAGAACGTCACCGACGGCATTGGGGTTCCGATAATCGGGGGGGCCGGGGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* *
12420348 GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCAT
261 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
12420413 CAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGC
326 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
12420478 CATTAATGTGTCTAAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
391 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
12420543 TTTAGTTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
456 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
12420608 GAAAA-TCATTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT-ACAA
521 -AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA-AA
* * * * **
12420671 AATAAAAAACGAGTCGTCTTCCCTTGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGTTTT
584 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
12420736 TACAAGCCATTAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACC
649 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * ** *
12420801 CTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTGGTGCCCGCTTGCCCGCCTGCT
714 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-
* * * * * * * *
12420866 CGTTTGTTTCGTCGGTTGGCTTAGGCATACAGACTTCATTCCCACTCGAAGATCAGACCGGGCTG
778 C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * ** * * *
12420931 AGGGTTACAGCAGCAGGATCGATAGCACGCAGA-GGGGAC-CTGGCCAATCCCCAGCTTAC
841 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTC-GGCCGATCCCCGGCTTGC
* * *
12420990 GCAT-CCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * *
12421054 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGAGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* *
12421119 TGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGC-TTTTTCCTTCGTCGGGG------
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT-CTTCGTCGGGGCACCAT
* * * *
12421177 CA-C----CATCGTCGGAGAACCTGA-CGGCGGCATTGCGATTTCGGCGATCGGGGGGGCCGGGG
195 CATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * *
12421236 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGTCCTTATATTGGCCCCCTATACCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
12421301 TCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
12421366 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
390 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
12421431 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
455 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * ** * ** *
12421496 CAAAACACCATCCGAAAAAATTTTAAAAAATCTTGAACCGCTAAAAGTTTTGAAAATCATGAAAA
520 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * * * *
12421561 ATGGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCGTCGTACGAATTT
585 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
12421626 ACAAGCCATAAAAATGGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
650 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
12421691 TATCGATCGACGGCTTGGGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTC
715 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--C
* * * * *
12421756 GCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATATCGGACCAA
778 -CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * * *
12421821 GGGTGGTGGTAGCAGGATCGGCAGCACGTAGAGGGGCACTCGACCGATCCCCGGCTTGC
842 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * * * *
12421880 GCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACCTAGGCATAAG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
** * *
12421945 GAGTTCATTCGTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* *
12422010 TGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
** * * * *
12422075 GCCGGAGCATCGTCGGAGAACCTGA-CGGCGACATTGCGGTTTCGACAATCGGGGGGGCCGGGGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG
* * * * *
12422139 GGTGTGCCCACATGATGTGTGATGGCTTCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
12422204 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
12422269 CAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTAGTCACAAAATCTTGTACACTTCGAGT
390 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
12422334 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAGGGATCACGTTTACCAAGTTTGGGGC
455 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
12422399 CAAAACACCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCTAAAAGTGTT-GAAAATCATGAAA
520 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT-TTCAAAAATCGTGAAA
* *
12422463 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTCGTATGAATT
584 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
12422528 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
649 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
12422593 CTATCGATCGAC-GCTTACGCATCCCGTCTCTCTGGCCGGCATAGTGCTCGCCCGCCCGCCCGTT
714 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--
* * *** *
12422657 CGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGACCA
777 C-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * * * *
12422722 AGGGTGGTGGTAGTAGGATCGGTAGCACGTAGAGGGGCACTCGGCCGATCCCCGGCTTGC
841 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * * * * *
12422782 GCATCCCACCCCTCTGGCTGGCTGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATATG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
** * *
12422847 GAGTTCATTCGTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
** * *
12422912 T---ATAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
** ** ** *
12422974 GCCGGAGCATCGTCGGAGAACCTGA-CGGCGGCATTACGGTTTTGGCGATC-GGGGGGCCGGGGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG
* * *
12423037 GGTTTGCCCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
12423102 TCAAGCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
12423167 CCATTAAAGTGTCTGAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
390 CCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
12423232 TTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACATCTACCAAGTTTGGTG
454 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
12423296 CCAAAAATCCTTCCGAAAAAATTTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTTAA
519 CCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* *
12423361 AAATAGAAAACGAGTCATCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
583 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
12423426 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
648 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
12423491 CCTATCGATCCGCGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCTCGCCCGG
713 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-G
* * * * * *
12423556 CCGTTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTGCTAGTCTAAGATCGGATCGGA-C
777 CC--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * *
12423620 GAGGGTTGCGGCAGCAGGATTGGCAGCATGCAGAGGGGGACCCGGTCGATTCCCTGGCTTGC
840 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGA-TCCCCGGCTTGC
* ** * *
12423682 GCATTCCTTCCCTCTGGCCGGCTGAGCACCCGCACACAT-GTTTCGTGGGTTGAC-T-----TA-
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATAC
*
12423739 -G-G--------CA---T-A-C--A--GAGTTCATTCCCAGTCTAAGATCGGACCGG-GCGAGGG
65 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * *
12423784 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGT-CCGCAGTTTTCTTC-CCTGGGG-----
130 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCA
* * * * **
12423842 -CA-C----CATCGTCGGAGAACCTGACCGACGACATTGGGGTTTCGATGATCGGATGGGCCGGG
194 TCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--G
* * *
12423901 GGGGGTGTGCGCTTACATGATGTGCGATAGGTGCTGGTACTTGGACCTTATATTTGCCCCCTATC
257 GGGGGTGTGCGC--ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * *
12423966 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCTTTTAAGATTTTACAGGTTTGCTTCC
320 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * *
12424031 AGTAGCCATTAAAGTGTCTGAAAT-CGGACACTTTTTTGAAAAGGTCAAAAAATCTTATACACTT
385 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
12424095 CGAGTTTTTGGCTTAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
450 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
12424160 GGGGCGAAAACTCCTTCTG-AAAAATTTTAACAAATCCC-AACCGTAAAAAGTTTTAAAAATCGT
515 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
* * *
12424223 GAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATG
580 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
12424288 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
645 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * * *
12424353 CACCCTATCGATCCACAGCTTACGTATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCACCTGCC
710 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * *
12424418 CG-CTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCAGACC-GAAC
775 CGCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-AC
* * * *
12424481 CGAGGGTT-----------A-CGGCAGCAAGCAGAGGGGGAC-CTGTCCGATCCCTGACTTGC
839 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTC-GGCCGATCCCCGGCTTGC
*
12424531 GCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTC----C------T---TT-----T---
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
12424575 -A----A----C--T-TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
12424628 TGTGGCAGCACATGCTGGGCT-TGGCATGTGCTGGTGCTGTATTTTTCTTCG-CAGGGG------
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCAT
* * * * *
12424685 CA-C----CATCGTCAGAGAACCTGACCGGTGACATTAGGGTTCCGCCGATC------G--GGGG
195 CATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * * * **
12424737 GGTGTGAGCACAAGATGTGCTATGGTTGCTGGTACTTGAG-CCTTAT-TTGGCCCCCTATAACTC
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCCTC
* * * * *
12424800 ATTAAACCTCGAGAACTCACACCCTCTTAAAAAGCATTTGAGATTTTGCAGGTTTGCTGCCGGTA
324 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
12424865 GCCATTAAAGTGTTTGATATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAG
389 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
12424930 TTTCTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCG
454 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
12424995 CCGAAA-TGCTTTCCGAAAAAATTTTAAGAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAA
519 CCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* * *
12425059 AAATAGAAAACGAGGCATCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
583 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
12425124 TTACAAGCCATAAAAATGGCATTCGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
648 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
12425189 CCTATCGATCCACGGCTTGCGCATCCTGTCTCTTTGGTCGGCGTAGTGCCCGCTCGCCCGCCCCG
713 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCG-CCCG
* * * * *
12425254 CCCGCCCGCTCGTTTCATTGGTTGGCTTAGGTATACGAAGTTCATTCCCAGTGTAAGATCAGACC
773 CCCG--C-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * *
12425319 AGACCGAGGGTTACGGTAG-AGGATCGGCAGCACGCAGAAGGGGACTCGGTCGATCCCCGGCTTT
835 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTG
12425383 C
900 C
* * * * * * *
12425384 GCATCCCGTCCCTCTGGCCAGCTGAGCGCCCGCGCGCTCATTTCGTGAGTTGACTTAAGCGTACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * **
12425449 GAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAACATTGGATTGGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * ** **
12425514 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGTGCCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
** * ** ** * *
12425579 GCCGGAACATCACCGGAGAACCTGACCGGTTGCATTGGGGTTCCAACGAT---------CGGAGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * *
12425635 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTAGCCCCCTATCGCTCAT
261 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
12425700 CAAACCTCCAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
326 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
12425765 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTT
391 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
12425830 TTTAGCTGAATTTTTTTGTGCTTGCAAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCC
456 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
12425895 AAAACTCCTTCTGAAAAAATTTTAACAAATCCC-AACTGCAAAAAGTTTTAAAAATCGTGAAAAA
521 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* *
12425959 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGA-CATTGTATGAATTTA
586 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* ** * *
12426023 CAAGCCATAAAACTGGCATTGGCACACAAAAAATATGAAAGATGTGCCTAAACCGCACCTAACAC
651 CAAGCCATAAAAATGGCATTGGCATGC-AGAAATATG-AAGATGTGCCTAAACC-CACCTACCAC
12426088 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCGTTGG-C-G-GTAGTGCCCGCCC-CCCG-CC
713 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTC--TGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* **
12426148 GCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATT-CCAG--TAA-ATCAGA-TGGAC
776 G-C-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * *
12426208 CGAAGGGTTGC-AC-G-AGGAT-GACAGCA-GCAGA-GGGGAC-CGTG--GATCCCCGACTTGC
839 CG-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCG-GCCGATCCCCGGCTTGC
* * *
12426263 ACAT-CCGCCCCTC--GCCGG-T-AGCTG-CCGCA-GCTCGTTTCATGGGTTG--TTTGGC-TA-
1 GCATCCCGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
12426317 GGA-TT-A-----A-TCTTAG-GTAC-GAGTTCATT-CCAGTCTAAGATCAGATCAGACC-A-GG
65 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* *
12426369 TTG-TGCAGCACATGCT-GGCTCGGGCATTGTGCTGGTG-C-CATTTTTCTTCG-CAGGGCA-CA
130 TTGCGGCAGCACATGCTGGGCTCGGGCA-TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * *
12426428 TCGTCGGAGCATCG-CGGAGAA-CTGA-C-GCGGCATT-GGGTTCCGA-GAATC--GGGGGACAG
194 TCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG-ATCGGGGGGGCCGG
* *
12426485 GGGGTGTGCACACATGACGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCT
258 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
12426549 CATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
323 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
12426614 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
388 AGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
12426679 AGTTTTTGGCTTAATTTTTTTGTGCTATGCCAAC-AAAATAAAAGGATCAACGTCTGCCAAGTTT
452 AGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAACAAAAATACAAGGATC-ACGTCTACCAAGTTT
* * * **
12426743 TGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG-AAAAAATTTTGAAAATCGT
515 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
* * * * *
12426807 GAAAAATAGAAAACGACTGGTATTGCCATGAAACTTCATGTGAAGGCTTAAGAGACCATTTGTAT
580 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TTGTAT
* *
12426872 GAATTTACAAGCCATAAAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAA-CCACC
644 GAATTTACAAGCCAT--AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
*
12426936 TACCACCCTATCGATCCAC-GCTTATGC-CATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
707 TACCACCCTATCGATCCACGGC-T-TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * *
12426999 CCGCCGCTCGCCCGCTCGTTTCATTGGTTGGCTTAGGTATACGAAGTTCATTCCCAGTGTAAGAT
770 CCG-C-C-CG--C-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
12427064 CAGACCAGACCAAGGGTTACGGTAG-AGGATCGGCAGCACGCAGAAGGGGACTCGGTCGATCCCC
829 CAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCC
*
12427128 GGCTTTC
894 GGCTTGC
* * * * * * *
12427135 GCATCCCGTCCCTCTGGCCAGCTGAGCGCCCGCGCGCTCATTTCGTGAGTTGACTTAAGCGTACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * **
12427200 GAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTGTAATATTGGATTGGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * ** * **
12427265 TGCGACAGCACATGCTGGGCTCGGGCAGGTGCTGGTGCCATATTTTTCTTC-ACTGGGGTGCCAT
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCAT
** * ** ** ** *
12427329 CGCCGGAACATCACCGGAGAACCTGACCGGTTGCATTGGGGTTCC-A--AT------GATCGGAG
195 CATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * * *
12427385 GGTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTAGCCCCCTATCGCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
12427450 TCAAACCTCCAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
12427515 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGT
390 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
12427580 TTTTAGCTGAATTTTTTTGTGCTTGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGC
455 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
12427645 CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAATATCGTGAAAA
520 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* *
12427710 ATAGAAAATGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
585 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
***
12427775 ACAAGCCATAAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
650 ACAAGCCAT-AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
12427840 CTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCAGCGTAGTGCTCGCCCGCCCGCCCG-C
714 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC
* * ** *
12427904 TCGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACTGGATCGAGG
779 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * * * * ** *
12427969 GTTACAGTAGTAGGATCAGCAGCATGCAGAGGGGGACCCGATCGATCCCCGTCTTGC
844 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * *
12428026 TCATTCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
** * *
12428091 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* *
12428156 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
** * * * * ** * *
12428221 GCCAGAGCATCGTTGGAGAACCTGACCGACGGCATTGGGGTTGCGGTGATCGGGTGGGCTGGAGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GG
** * * *
12428286 GGTGTGCGGGCATGATGTGCGATGGGTGCTAGTACTTGACCCTTATATTGGCCCCCTATCCCTTA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
12428351 GCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
12428416 CCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
390 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
12428481 TTTTAGCTGAATTTTTTTGTGCACGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
455 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
12428546 CAAAACTACTTTCGAAAAAATTTTAAAAAATCCCAAACC-CCAAAA-TTTTAAAAATCGTGAAAA
520 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
*
12428609 ATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTT
585 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** * *
12428674 ACAAGCCATAAAAATGGCATTGGCACACATAAATTTGAAGATGTGCCTAAACCCACCTACCACCC
650 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * ** * *
12428739 TACCGATCCACGGCTTGCGCATCCCGTCTCCCTGGTTGACGTAGTGCCCGCCCGCCCGCCC-ACT
715 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCT
* * ** *** *
12428803 CGTTTCGTCGGGTGGCTTAGGCATATGGAGTTCATTCATAGTCTAAGATCAGATTGGACCAAGGG
780 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * * * * * *
12428868 TTGTTGGCAGCAGGATCGGCAGTAGGTAGAGGGGGACCCGACCGATCCCCAGCTTAC
845 TTG-CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * *
12428925 GCATCCCGCCCCTCT-GCCGGCTGAGCTG-CCGCATGCTCGTTTCATGGGTTGTCTTAGGCATAC
1 GCATCCCGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * * *
12428988 GGAGTTAATTCCCGGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGG
65 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * * *
12429053 TTGTGCCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCAGGGCACCAT
130 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * *
12429118 CATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATC--GGGGGACAGGG
195 CATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* *
12429181 GGTGTGCACACATGACGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
12429245 TCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
12429310 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
390 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
12429375 TTTTGGCTTAATTTTTTTGTGTATGCCAACAAAAATAAAAGGATCACGTCTGCCAAGTTTTGGGG
455 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGG
* * * **
12429440 CAAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG-AAAAAATTTTGAAAATCGTGAAA
519 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * * * *
12429504 AATAGAAAACGACTGGTATTGCCATGAAACTTCATGTGAAGGCTTAAGAGACCATTGTATGAATT
584 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
12429569 TACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
649 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
** * * * *
12429634 CTATCGATCCACGGCTTATGCATCTCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCTGCCAGCC
714 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-C
* * *
12429699 TGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCAGATCG
778 --CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
** * * * * * * *
12429764 AGGGTTATGGTAGCAGGATCAGCAACACGAAAAGAGGGACTCGGCCGATCCCCGGCTTGT
841 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * * * * * * *
12429824 GCACCCCGCCCCTTTGGCTGGCTGAGAGCCTGCACGCCCGTTTCGGGGGTAGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *** **
12429889 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTAAATTGGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * * * *
12429954 TACAGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT-TGGG-----T-
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * **
12430012 -T---AGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCCTGGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* *
12430073 GTGTACGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCAT
261 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
12430138 CAAACCTGGAGAACTCTCACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
326 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
12430203 TATTAAAGTGTCTGAAACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
391 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
** * **
12430268 TTTAGCTGAATTTTTTCATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTG
456 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
12430333 AAAACTCCTTCCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGCGAAAAA
521 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* * * ** *** **
12430398 TAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAA-G---ATGTG-CC--TAAACCCACCTA
586 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * ** ** * * *** * * * ** * *
12430456 CCACCCTATCGATCTGCGGC-TTGCGCATTCCGTCTCTCTG--GCTG-GCGTAGTGCCCGCCTGC
651 CAAGCC-ATAAAAAT--GGCATTG-GCATGCAG-AAATATGAAGATGTGCCTA-AACCCACCTAC
* * * *** * * ***
12430517 C-CGCC---CG-T--TC-G-TTTCG--T-CGGT-TGGCT-TAGGCATACGAAGTTCATTCCCAGC
710 CAC-CCTATCGATCCACGGCTTGCGCATCCCGTCT--CTCT-GGCCGGCGTAGTGCCCGCCC-GC
* * * * *** * * * ** *
12430568 CAGGATCAGAC-C-AAAC-TGAGGATGGC---GGCA-GCAGGA-TT-GGT---AG-C-ACG--CA
770 C-CG-CCCGCCTCGTTTCGT-CGGTTGGCTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATCA
*** * * * * * * * ****** * *
12430617 GAGGGGGACCCA--G-T-CGGTC-CCCGGCTTGCGCATCCCGCCCCTCTGG-CT-GGCTGA---G
831 GA-CCAGACCGAGGGTTGCGG-CAGCAGGATCG-GCAGCACGCAGAGGGGGACTCGGCCGATCCC
12430672 C-GC-T-C
893 CGGCTTGC
* * * * ** * **** ** ** * ***** * *
12430677 GCAT---GCTCGTTTCGTGGGTTGA-CTTAAGCATACAAAG-TTCATTCCCAGTC-TAAGCATAC
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATAC
* *
12430736 GGAGTTCATTCCCAATCTAAG-AT-C-G-G---------A--C------C-GA----ACTGAGGG
65 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
** * * *
12430775 TTGCGATAGCACATGCTGGGCTCGAGCATTTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAT
130 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
** * * * *
12430840 CGCCAGAGCATCGCCGGAGAACCTGACCGGCAGCATTAGGGTTCCGACGATC-GGGGGGCCGGGG
195 CATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG
*
12430904 GGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
259 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
12430969 ACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGCA
324 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
12431034 ACCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
389 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * **
12431099 TTTTTAGCTGAATGTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTAATAAGTTTGGGG
454 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** ** *
12431164 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCATGAACCTTAAAAAGTTTCAAAAATCATGAAA
519 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
12431229 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
584 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
12431294 TACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
649 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
12431359 CTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGACCGCCCGCC
714 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC
* * * ** * **
12431424 TGTTCGTTTCTTCGGTTGGTTTAGGCATACAGAGTTGGTTCCCAGTCTAAGATCGGACCAGACTA
779 ---TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
*** ** *
12431489 AGGGTTGCAATAGCAGGATCAACAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGC
841 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * **
12431549 GCATCCTGGCCCTCTGGCCGGCTGAGCGGTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * * * *
12431614 GAGTTGATTCCTAGTTTAAG-TTACGGAGTTCATTCCTAGTATAAGATCAGACTGGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
12431678 TGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGGGCCACATTTTTCTT--TACAAGGGCACCA
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-C-GGGGCACCA
* * *
12431741 TCGTCGGAGGCATCGTCGGAGAACCTGACCGACGGCATTGGCGTTCCGACGATCGGGGGGGGCCG
194 TCATCGGA-GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCC-
* *
12431806 GGGGGGGTGTACGCACATGATGTGCGATGGGTGCTTGCTACTTGGCCCTTATATTGGCCCCCCTA
256 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGC-TGGTACTTGGCCCTTATATTGG-CCCCCT-
* *
12431871 ATCACTCATCAAACC-CAAGAACTCACACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
317 ATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
12431935 TGGCCAGTAGCCATTAAAGTGTCTAAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
381 T-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
12432000 CAATTCAAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAATAATACAAGGATCACGTCT---A
445 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
** * * * *
12432062 AGTTTGTTGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAATAAGTTTCAAAA
510 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* *
12432127 ATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATT
575 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
** **
12432192 GTATGAATTTACAAGCCATAAAAATGGCATTGGCGCGTGGAAATATGAAGATGTGCCTAAACCCA
640 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
12432257 CCTACCATCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTAGCCGGCGTAGTGCCTGCCCGC
705 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--T----G-
*
12432322 CCACCCGCCCGCCCGGCCGCACGCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
761 ---CCCGCCCGCCC-G-C-C-CG--C-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * *
12432387 CCCATTCTAAGATTC-GACC-GAACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGG
816 CCCAGTCTAAGA-TCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* **
12432450 ACCCGATCGAT-CCCGGCTTGC
879 ACTCGGCCGATCCCCGGCTTGC
* * * * * *
12432471 GCATCCCACCCCTCTAGCCGGCTTAGCGCACGCACGCTCGTTTCGTGGGCTGGCTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
12432536 GAGTTCATT-CC---C-AATC-TA---AG---------A-T-T-AGAT-----CGGATCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* ** ** **
12432575 TGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAAGGTGCCATC
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * * * *
12432640 -GCTAGAGTATCGCCGGAGAACCTGACCGGCGGCATTGTGCTTTCG-CGGATC-GAGGGGCCGGG
196 ATC-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC-GATCGGGGGGGCCGGG
* *
12432702 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCTCCTATCCCTC
259 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
12432767 ATCAAACCTCAAGAA-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTA
324 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
12432831 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
389 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
12432896 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
454 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * ** ** *
12432961 CCAAAAATCCTTTC--AAAAATTGTAAAAAGTCCCGAACCAAAAAAAGTTTGGAAAATTGTGAAA
519 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
*
12433024 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
584 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
**
12433089 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCGGCCTACCACC
649 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * **
12433154 CTATCGATCCATGGCTTGCACGTCCCGTCTCTCT-GCCGGCATAGT----GCCTGCCCATCCG-C
714 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC
* *
12433213 TCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
779 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * ** * * *
12433278 GTTGGGGTAGTAGGATCGACATTACGCAGAGGGAGACCCGACCGATCCCCGGCTTGC
844 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * * * * * * * *
12433335 GCATCCCGCCCATCTGGCGGGCTGAGTGCCCGCTCACTCATTTCATGTGTTGACCTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
12433400 GAGTTCATTCCCGGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCAGTCC-ATGGG
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGG
* * * * * * *
12433464 TTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTACGTTGAGGCACCAT
130 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * * ** * *
12433529 CACCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGGTGATCTGGAGGGCCGGGG
195 CATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * * *
12433594 GGTGTGCGCACATGATGTGCGATGGGTGCTGTTGCTTGGCCCTTATATTGGACCCCTATCACTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
12433659 TCAAACCTCGAGAACTCACACCCCTTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
12433724 CCATTAAAGTGTCTCAAACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
390 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
12433789 TTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGATTGGGGC
455 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** * * * *
12433854 CAAAACGCCTTTTGAAAAAATTTTAAAAAATCCTGAAACGTAAAAAGTTTCAAAAATCATGAAAA
520 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * * * *
12433919 GTAGAAAATGAGTTGTCTTGCCATGAAACTTTACGAGAAGGCTTAAGGGACCATTGTATGAATTT
585 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
12433984 ACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCGCCTACCACCA
650 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
12434049 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCC
715 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-CGC
* ** * * * *
12434114 GCTCGTTTCGTCGGTTGACTTAGGTGTACGAAGTTGATTCCTAGTCTAAGATCGGACCAGACCGA
778 -CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
** ** ** * * * *
12434179 GGGTTGTAGCAGCAGGATCGATAGCACATAGAGGGGCACCCAGCCGATCCCCGACTTGC
842 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* ** * * *
12434238 GCATCCTGCCCCTCTGGCCGATTGAGCACCCGCACGCTCGTTTCATGTGTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
12434303 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * ** *
12434368 TGTGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCA-C--C
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * *
12434430 ATC---G---C--CGGAGAACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGTGGCCGGGGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * * *
12434487 GTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCTTTAT
261 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * *
12434552 CAATCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGC
326 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
12434617 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
391 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
12434682 TTTAGCTGAATTTGTTTGTGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCC
456 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * ** **
12434747 AAAACTCCTTCAGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTATGAAAAA
521 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
12434812 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
586 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
12434877 CAAGCCAGAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCT
651 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
12434942 ATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGCCCACCCG
716 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-CGC-
* * *
12435007 CTCGTTCCATCGGTTGGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCAGA-CAGGACCGA
778 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGA
* * * * * * * *
12435071 CGGTTGTGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCTCGGCTTAC
842 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * * * * *
12435130 GCATCCCGCACCACTGGCTGGCTGAACGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
12435195 GAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * *
12435260 TGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGG---CA-C
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * * * *
12435321 --C--AGCATCGCCAGACAAGCTGATCGGCAGCATTGGGGTTCCGGCGATCGGAGGGGCCGAGGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC---GG
* *
12435382 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCT
258 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
12435447 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGT
323 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
12435512 AGCCATTAAAGTTTCTGAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
388 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
12435577 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACTTCTACCAGGTTTGGG
453 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
12435642 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAA
518 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* *
12435707 AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAAT
583 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
12435772 TTACAAGCCAGAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCAC
648 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
12435837 CCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCAGGCGCAGTGCCCGCCCGCCCTCCCAC
713 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCC-C
* * *
12435902 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCAGA-CAGGAC
776 GC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GAC
* * * * * * * *
12435966 CGACGGTTGTGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCTCGGCTTAC
839 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * * * * *
12436028 GCATCCCGCACCACTGGCTGGCTGAACGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
12436093 GAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * *
12436158 TGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGG---CA-C
131 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * * * *
12436219 --C--AGCATCGCCAGACAAGCTGATCGGCAGCATTGGGGTTCCGGCGATCGGAGGGGCCGAGGG
196 ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC---GG
* *
12436280 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCT
258 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
12436345 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGT
323 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
12436410 AGCCATTAAAGTTTCTGAAATCGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
388 AGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
12436475 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACTTCTACCAGGTTTGG
452 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
12436540 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGA
517 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* *
12436605 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAA
582 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
12436670 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
647 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
12436735 CCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCAGTCGTAGTGCCCGCCAGCCCGCCCA
712 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-
* * *
12436800 CCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
775 CGC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * * * *
12436865 AGGGGGTTGTGG-AACAGGATCGACAACACGCAGAGGGGGACCCGACCGATCCCTGGCTTGC
839 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
* * * * *
12436926 GCATCCTGCCCCCTCTAGCCGGTTGAGCGTCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATAC
1 GCATCCCG-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* ** * *
12436991 GGAGTTCATTCCCAATCTAAGCATACAAAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGG
65 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * * * * * *
12437056 TTGTGACAGCAGATGCTGGGCTCGGGCATGTACTGGTGTCGCATTTTTCTTCGCCAGGGTACCAT
130 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * * * * * *
12437121 CACCGGAGCATC-ACTGGAGAACCTAACCAGCTGCATTGGGGTTCGGGCGATCGGGGGCGTCGGG
195 CATCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GGCCGG
* * * * *
12437185 GGGGTGTGCGCACATGATGTGTGATGGGTGTTGGTACTT-GCCCTTATCTTGGTCCCCTATCCTT
258 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
12437249 CATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAAT
323 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
12437314 AGCCTTTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
388 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
12437369 CTTAGACTGG
Statistics
Matches: 22055, Mismatches: 2508, Indels: 1456
0.85 0.10 0.06
Matches are distributed among these distances:
822 53 0.00
823 3 0.00
826 1 0.00
828 1 0.00
830 90 0.00
831 138 0.01
832 27 0.00
833 580 0.03
834 1 0.00
835 2 0.00
836 6 0.00
837 20 0.00
838 26 0.00
839 10 0.00
840 9 0.00
841 2 0.00
842 103 0.00
843 83 0.00
844 2 0.00
845 7 0.00
846 15 0.00
847 10 0.00
848 45 0.00
849 62 0.00
850 50 0.00
851 15 0.00
852 112 0.01
853 209 0.01
854 172 0.01
855 48 0.00
856 45 0.00
857 11 0.00
858 37 0.00
859 16 0.00
860 16 0.00
861 619 0.03
862 227 0.01
863 187 0.01
864 206 0.01
865 398 0.02
866 41 0.00
867 99 0.00
868 231 0.01
869 141 0.01
870 16 0.00
871 32 0.00
872 27 0.00
873 35 0.00
874 57 0.00
875 475 0.02
876 85 0.00
877 362 0.02
878 60 0.00
879 43 0.00
880 39 0.00
881 28 0.00
882 45 0.00
883 135 0.01
884 49 0.00
885 26 0.00
886 106 0.00
887 178 0.01
888 322 0.01
889 649 0.03
890 286 0.01
891 624 0.03
892 1286 0.06
893 185 0.01
894 888 0.04
895 336 0.02
896 560 0.03
897 386 0.02
898 2335 0.11
899 2105 0.10
900 607 0.03
901 520 0.02
902 727 0.03
903 1905 0.09
904 671 0.03
905 454 0.02
906 162 0.01
907 291 0.01
908 20 0.00
909 81 0.00
910 189 0.01
911 43 0.00
912 56 0.00
913 15 0.00
914 45 0.00
915 89 0.00
916 27 0.00
917 33 0.00
919 9 0.00
920 1 0.00
921 2 0.00
922 76 0.00
923 92 0.00
924 2 0.00
925 1 0.00
926 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
ATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGC
Found at i:12421083 original size:26 final size:26
Alignment explanation
Indices: 12421047--12421099 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12421037 GTTGACTTAG
12421047 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12421073 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12421099 G
1 G
12421100 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12421974 original size:26 final size:26
Alignment explanation
Indices: 12421938--12421990 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12421928 GTTGACCTAG
**
12421938 GCATAAGGAGTTCATTCGTAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
12421964 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12421990 G
1 G
12421991 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:12422870 original size:26 final size:26
Alignment explanation
Indices: 12422840--12422892 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12422830 GTTGACTTAG
* **
12422840 GCATATGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12422866 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12422892 G
1 G
12422893 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12425477 original size:26 final size:26
Alignment explanation
Indices: 12425439--12425500 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
12425429 TGAGTTGACT
* * *
12425439 TAAGCGTACGGAGTTCATTCCTAGTC
1 TAAGCATATGGAGTTCATTCCCAGTC
12425465 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATATGGAGTTCATTCCCAGTC
12425491 TAA-CAT-TGGA
1 TAAGCATATGGA
12425501 TTGGACCGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 26 0.79
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
TAAGCATATGGAGTTCATTCCCAGTC
Found at i:12428120 original size:26 final size:26
Alignment explanation
Indices: 12428084--12428136 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12428074 GTTGACTTAG
12428084 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12428110 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12428136 G
1 G
12428137 ATCAAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12429005 original size:27 final size:27
Alignment explanation
Indices: 12428975--12429031 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
12428965 TTCATGGGTT
* *
12428975 GTCTTAGGCATACGGAGTTAATTCCCG
1 GTCTTAAGCATACGGAGTTAATTCCCA
* *
12429002 GTC-TAAGCGTACGGAGTTCATTCCCA
1 GTCTTAAGCATACGGAGTTAATTCCCA
12429028 GTCT
1 GTCT
12429032 AAGATCAGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.30
Consensus pattern (27 bp):
GTCTTAAGCATACGGAGTTAATTCCCA
Found at i:12429014 original size:26 final size:26
Alignment explanation
Indices: 12428985--12429034 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12428975 GTCTTAGGCA
*
12428985 TACGGAGTTAATTCCCGGTCTAAGCG
1 TACGGAGTTAATTCCCAGTCTAAGCG
*
12429011 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTAATTCCCAGTCTAAG
12429035 ATCAGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (26 bp):
TACGGAGTTAATTCCCAGTCTAAGCG
Found at i:12429918 original size:26 final size:26
Alignment explanation
Indices: 12429882--12429934 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12429872 GTAGACTTAG
12429882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12429908 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12429934 G
1 G
12429935 ATTAAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12430730 original size:26 final size:26
Alignment explanation
Indices: 12430701--12430756 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
12430691 TGGGTTGACT
*
12430701 TAAGCATACAAAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAATC
**
12430727 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACAAAGTTCATTCCCAATC
12430753 TAAG
1 TAAG
12430757 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAATC
Found at i:12431648 original size:25 final size:25
Alignment explanation
Indices: 12431610--12431658 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
12431600 GACTTAGGCA
* *
12431610 TACGGAGTTGATTCCTAGTTTAAGT
1 TACGGAGTTCATTCCTAGTATAAGT
12431635 TACGGAGTTCATTCCTAGTATAAG
1 TACGGAGTTCATTCCTAGTATAAG
12431659 ATCAGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (25 bp):
TACGGAGTTCATTCCTAGTATAAGT
Found at i:12433445 original size:26 final size:26
Alignment explanation
Indices: 12433393--12433445 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12433383 GTTGACCTAG
*
12433393 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12433419 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12433445 G
1 G
12433446 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12433908 original size:26 final size:26
Alignment explanation
Indices: 12433869--12433926 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
12433859 CGCCTTTTGA
* * *
12433869 AAAAATTTTAAAAAATCCTGAAACGT
1 AAAAAGTTTAAAAAATCATGAAAAGT
*
12433895 AAAAAGTTTCAAAAATCATGAAAAGT
1 AAAAAGTTTAAAAAATCATGAAAAGT
12433921 AGAAAA
1 A-AAAA
12433927 TGAGTTGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.59, C:0.09, G:0.10, T:0.22
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCATGAAAAGT
Found at i:12434326 original size:26 final size:26
Alignment explanation
Indices: 12434296--12434348 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12434286 GTTGACTTAG
12434296 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12434322 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12434348 G
1 G
12434349 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12435224 original size:26 final size:26
Alignment explanation
Indices: 12435188--12435240 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12435178 GTTGACTTAG
* *
12435188 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12435214 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12435240 G
1 G
12435241 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:12436122 original size:26 final size:26
Alignment explanation
Indices: 12436086--12436138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12436076 GTTGACTTAG
* *
12436086 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12436112 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12436138 G
1 G
12436139 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:12438148 original size:11 final size:11
Alignment explanation
Indices: 12438132--12438164 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
12438122 CGGTCAGGTT
*
12438132 CTCCGATGATG
1 CTCCGACGATG
12438143 CTCCGACGATG
1 CTCCGACGATG
12438154 CTCCGACGATG
1 CTCCGACGATG
12438165 GTGCCCCGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:12439937 original size:26 final size:26
Alignment explanation
Indices: 12439900--12439952 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12439890 CTGATCGGAT
12439900 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
* *
12439926 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
12439952 C
1 C
12439953 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:12441714 original size:26 final size:26
Alignment explanation
Indices: 12441685--12441737 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12441675 CCGATCCAAT
* *
12441685 CTTAGATTGGGTATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
12441711 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
12441737 C
1 C
12441738 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:12442304 original size:889 final size:886
Alignment explanation
Indices: 12438485--12444432 Score: 6741
Period size: 894 Copynumber: 6.6 Consensus size: 886
12438475 CGAGCGAGCG
* * * *
12438485 GGCAAGATGACCCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGA-TTTTTAA
1 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAA
* ** * * * *
12438549 AATTTTTTCGAAAGGAGTTTTGGCCCCAAACTCAGTAGATGAGATCCTTGTATTTTTTTTGGCTT
66 AATTTTTTCG-GAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
12438614 GCACAAAAAAACTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
130 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
12438679 CCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTGAAATGCTCTTTGAGGG
195 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGG
* *
12438744 GGTGTGAGTTCTTGA-GTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCA
259 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
*
12438808 -CTGCACATCATGTGCGCACACCCCCCCGGCCCCACCGATCG-TCGGAACCCCAATGCCGCCTGT
324 TC-GCACATCATGTGCGCACA-CCCCCCGGCCCC-CCGATCGCT-GGAACCCCAATGCCGCCGGT
* ** *
12438871 CAGGTTCTCCGACGATGCTTCGACGATGGTGGCCCAACAAAGAAAAATGCGGCACCAGCACATGC
385 CAGG-T-T----C--T-C--CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGC
* * * * *
12438936 CCGAGCACACCATGTGC-GCCGGGCAAACCCTCCAGT-CGTGTTTGATCTTAGACCGGGCAAATG
439 CCGAGCCCAGCATGTGCTGCC--GC-AACCCT-CGGTCCG-GTCTGATCTTAGACTGGG--AATG
* * *
12438999 AACTCCGAATGCTTAGATTGGGAAATGAACTCCGTATGCCTAAGCTCAACCCACGAACCATGAGC
497 AACTCCGTATGCTTAGACTGGG-AATGAACTCCGTATGCCTAAG-TCAACCCACGAA--ACGAGC
* * * * *
12439064 GTGCGGGCGCTCATCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
558 GTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATC-GCCGAGTCCCCCTCT
* * * * * * *
12439129 GCATGCTGTCGATCCTGTTGCCACAACCCTCT-GTTTGATCCAATCTTAGAATGGGAAATAAACT
622 ACGTGCTGTCGATCCTGCTGCCACAACCCT-TGGTTTGGTCCGATCTTAGACTGGG-AATGAACT
* * * * *
12439193 CCGCTGTGCCTTAAGCCAACTGAACGAAACGAGCGGGTGGGCGGGCGGGCGAGGCACTACGTCGG
685 CCG-TATGCC-TAAGCCAACCG-ACGAAACGAGCGGGCGGGCGGAC-GGC-AGGCACTACG-CCG
*
12439258 CCAGAGAGACCGGTATGCCGCGAAGCCTGTGGATCGATAAGGGTGGTAGGGTGGGTTTAGGCACA
744 CCAGAGAGA-CGGGATG-CGC-AAGCC-GTGGATCGAT-AGGGTGGTA-GGTGGGTTTAGGCACA
* ** *
12439323 TCTTCATGTTTCTGTATGGCCAATGGCCATTTTTATGGGCTTTTCAAATTCATACAATGGTCCCT
803 TCTTCATATTTCTGCGT-GCCAAT-GCCATTTTTAT-GGCTTGT-AAATTCATACAATGGTCCCT
*
12439388 TAGGCCTTCACGTGAAGTTTCAT
864 TAAGCCTTCACGTGAAGTTTCAT
* *
12439411 GGCAAAACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTACGGTTCGTGATTTTTTAA
1 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAA
* ** **
12439475 AATTTTTTCGGAAGGAGTTTTAGCCCTGAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGTGT
66 AATTTTTTCGG-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
** * * *
12439539 GCGTAAAAACATTCGGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
130 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * *
12439604 CCCATGTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAACTCTCAAATGCTGTTTAA-GG
195 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
12439668 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
260 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
12439733 CGCACATCATGTGCGCACACCCCTTC-GCCCCCCCATCACCGGAACCCC-ATGCCGTCGGTCAGG
325 CGCACATCATGTGCGCACACCCC-CCGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGG
* * * * *
12439796 TTCTCCGGCGATGCTTCGGTGATGGTGCCTCGACGAAGAAAACTGCGGCACCAGCACTTGCTCGC
389 TTCT-C--CGA-----C---GATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCG-
* * * * * * * *
12439861 A-CCCAGCATATGTTGCCGTAACCCTTGGTCTGATCGGATCTTAGACGGGGAATGAACTCCGTAT
442 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
12439925 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACACACGAAACGAGCATGCGGGCTCTCAG
507 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
12439990 CCGGCCAGAGGGG-CGGATGCGCAAGCTGGGAATCGGCCAAGTCCCCCTCTACGTGCTGCCGATC
572 CCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATC-GCCGAGTCCCCCTCTACGTGCTGTCGATC
* * *
12440054 TTGCTGCCACAA-------------CCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCA
636 CTGCTGCCACAACCCTTGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * *
12440106 ATCGATAAAACGAGCGTGCGGGCGGGCGGATGGACAGGCACTACGTCGACCAGGGAGACGGGATG
701 ACCGACGAAACGA----GCGGGCGGGCGGACGG-CAGGCACTACGCCG-CCAGAGAGACGGGATG
* ** *
12440171 CGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAACACATCTTCATATTTCTACGTGCCAA
760 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
* *
12440236 TGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCAT
825 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
12440298 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCGAGATTTTTTAA
1 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAA
* * * *
12440363 AATTTTTTCGAAAGGAGTTTTGGCCCAAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCAT
66 AATTTTTTCG-GAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
12440428 GCACAAAAAAATTCAGCTAAAAGA-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
130 GCACAAAAAAATTCAGCTAAAA-ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
12440492 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
194 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-G
* *
12440557 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCC
258 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
12440622 ATCGCACATCATGTGCACACACCGCCTCCGAACCCCCC-ATCGCCGGAACCCCAATGCCGTCGGT
323 ATCGCACATCATGTGCGCACACC-CC-CCG-GCCCCCCGATCGCTGGAACCCCAATGCCGCCGGT
* * * * *
12440686 CAGGTTCTCCGATGACGCTCCGGCGACGGTGCCCCGACGAAGAGAAATGCGACACCAACACATGC
385 CAGGTTCTCC---GA--------CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGC
* * * *
12440751 CCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGCGAATGAACTCCA
439 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* *
12440816 TATGCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
504 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* ** *** * *
12440881 CAGCTGGCCAGAGGGGTGGGACACGCAAGTTAGGGATCGACCGAGTCCCCTTCTATGTGCTG-CT
569 CAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCG-CCGAGTCCCCCTCTACGTGCTGTC-
* ** * *
12440945 GATCCTGCTACCGTAACCTTTGGTTTGGTCCGATCTTAGACTGGGATTGAACTCCGTATGCCTAA
632 GATCCTGCTGCCACAACCCTTGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
12441010 GCCAACCGACGAAACG-GACGGGCGGGTGGGAAGGCAGGCACTATGTCGGCTAGAGAGATGGGAT
697 GCCAACCGACGAAACGAG-CGGGCGGG-CGGACGGCAGGCACTACG-CCGCCAGAGAGACGGGAT
* * *
12441074 GCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCGTGCCA
759 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* * ** * *
12441139 ATGCCATTTTTATGGCTTCTAAATTCATATAGCGGTCCCTTAAGCCTTTACGTGAAGATTCATT
824 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-T
* * * * *
12441203 GGCAAGACGACTCGTTTTCTA-TTTTCAACAATTTTCAAAACTTTTTACGGTTTGGGATATTTTA
1 GGCAAGACGACTCGTTTTCTATTTTTC-ACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTA
* * *
12441267 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTCTATTTTTTTTGGCA
65 AAATTTTTTCGG-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * * * **
12441332 TGTACAAAAACATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGATAATTTGAAAAAAGTGT
129 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* **
12441397 CCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGGAATGCTCTTTAAGG
194 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
12441462 CGGTGTGAGTTCTCGAGGTTTGATGAGGGGTA-GGGGCCAATATAAGGGCCAAGTACCAGCACCC
259 -GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
*
12441526 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGATCAG
323 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAG
* * *
12441591 GTTCTCCGACGATGGTGCCCTGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
388 GTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* ** * * ** * * *
12441656 TGCTGCCGTAAATCTTGGTCCGATCCAATCTTAGATTGGGTATGAACTCCGCATGCTTAGACTGG
453 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
** * * *
12441721 GAATGAACTCCGTATGCCTAAGTCAACCCATTAAACGAGCATGCGGGCACTCATCCGGCCAGAGG
518 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * ** **
12441786 GGTGGGATGCGCAAGCCGAGGATCTGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTATCTTA
583 GGTGGGATGCGCAAGCCGGGGATC-GCCGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACA
* *
12441851 ACCCTTGGTTTGGTCCAATCTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
647 ACCCTTGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
12441915 GAGCGGCCGGGCGGACCGGCAGGCACTACGCCGCCTAGAGAGACGGGATGCGCAAGCCCTGGATC
712 GAGCGGGCGGGCGGA-CGGCAGGCACTACGCCGCC-AGAGAGACGGGATGCGCAAGCCGTGGATC
12441980 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
775 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
*
12442045 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCAT
840 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
12442092 GGCAAGACGACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTACGATTTGAGATTTTTTAA
1 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAA
* * *
12442157 AGTTTTTTCAGGAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCGTTGTATTTTTGTTGGCAT
66 AATTTTTTC-GGAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
12442222 GGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTC
130 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * *
12442287 CCCATTTCAGACACTTTAATGCCTACAGGCAGCGAACCTGTAAAATCTCAAATGTTCTTTAAAGG
195 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGG
* *
12442352 GGTGTGAGTTCTCGAGGTTTGACGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
259 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * *
12442417 TCGCACATCATGTGTGCATACCCCCCCGGCCCCCCGATCGCCGAAACCCTAATGTCGCCGGTCAG
324 TCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAG
* *
12442482 GTTCTCTAGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCTC
388 GTTCTC---CGA--------CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCC-C
* * *
12442547 GAGCCCAGCATGTGCTACC-AAAACC-C--T-C-G---G----T---CT----A-G---TCCG-A
441 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* *
12442587 T-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-GACGTGCAGGCGTTC
506 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-CGTGCGGGCGCTC
** * * * * * *
12442650 AGCCGGCCAGAGGGAAGGGATGCGTAAGCCGGGGATCGATCGAGTCCCCTTCTACATGCTATCAA
570 AGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCG-CCGAGTCCCCCTCTACGTGCTGTCGA
* ** *** * **
12442715 TCCTACTGCTGCAACCCTCAATCTGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
634 TCCTGCTGCCACAACCCTTGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * * * *
12442780 GAACCGATGAAATGAGCGGGCGGGTGGGCGAGCGGGCACAACACCGGCCAGAGAGATGGGATGCG
699 CAACCGACGAAACGAGCGGGCGGGCGGACG-GCAGGCACTACGCC-GCCAGAGAGACGGGATGCG
* * *
12442845 CAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
762 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* * * *
12442910 CCATTTTTATAGCTTGTAAATTCATA-AATTGGTCCTTTAAGCCTTCATGTTAAGTTTCAT
827 CCATTTTTATGGCTTGTAAATTCATACAA-TGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
12442970 AGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTA
1 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAA
* * * *
12443035 AATTTTTTCGAAAG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTTTTTTTGTTGGCATG
66 AATTTTTTCGGAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
12443099 CACAAAAATATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
131 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
12443164 CCATTTCAGACACTTTAATGGCTACTGGCCA-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
196 CCATTTCAGACACTTTAATGGCTACTGG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GG
*
12443228 GGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
259 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
12443293 TCGTACATCATGTGCGCACAACCCGCCCCGGCCCCCCGATCG-TCGGAACCCCAATACCGTCGGT
324 TCGCACATCATGTGCGCAC-A-CC-CCCCGGCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGT
* * *
12443357 CAGGTTCTCCGACGATGCTCTGACGATGATGCCCAGGTGAAGAAAAATGTGGCACCAGCACATGC
385 CAGGTTCTCCGACGA-----T---G--G-TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGC
* * *
12443422 CCGAGCCCAGGA--TG-T--CGCATCCCTCGGTCCGGTCTGATATTAGACT-GGAATGAACTCCG
439 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * *
12443481 TTTGCTTAGACTAGGAATAAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGGG
504 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC--GT--GCGGG
* * * * *
12443546 CGCTCAGCCGGCCAGAGGGGTGGGACGCGCAAGCTGGGGATTGGCCGGGTCCCCCTCTACGTGTT
565 CGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGA-TCGCCGAGTCCCCCTCTACGTGCT
* * * *
12443611 GTCGATCTTGCTGTCACAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTC-CATGC
629 GTCGATCCTGCTGCCACAACCCTTGGTTTGGTCCGATCTTAGACTGGGAATGAACTC-CGTATGC
* * *
12443675 CTAAGCCAACTGACGAAAGGAGCGGGC--G-GG-C-G--GGCACTACGTCGGCCAGAGAGACGGG
693 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGCAGGCACTACG-CCGCCAGAGAGACGGG
* * * * *
12443733 ATGCCTCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTTTGCATA
757 ATG-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
* *
12443798 ACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCA
821 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
12443863 T
886 T
* * * *
12443864 GGCGAGACGAC-CGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAA
1 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAA
* * *
12443928 AATTTTTTCGGAAGCATTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TTGGCA
66 AATTTTTTCGG-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCA
*
12443992 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGT
129 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
12444057 CCCCATTTAAGACACTTTAATGGCTACTTGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGG
194 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
12444122 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCAA
259 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * ** *
12444187 TCGCACATCATGTGTGCACACCCCCCGGCCCACCCGATTG-TCAAAACCCCAATGCTGCCGGTCA
324 TCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGCT-GGAACCCCAATGCCGCCGGTCA
* * ** * *
12444251 GGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATATGGCACTAGCACATGCCT
387 -G------G-T--T-CTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCC
* * *
12444316 AAGCCCAGCATGTGCTGCCGCAACCCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGT
441 GAGCCCAGCATGTGCTGCCGCAACCC-TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * * *
12444381 ATGCTTAGACTGGGAATGAACTGCTTATGCCTAAGCCAACCGAAGAAACGAG
505 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
12444433 TGGTTGGGCG
Statistics
Matches: 4314, Mismatches: 541, Indels: 361
0.83 0.10 0.07
Matches are distributed among these distances:
867 3 0.00
872 2 0.00
873 3 0.00
874 2 0.00
875 8 0.00
876 242 0.06
877 157 0.04
878 331 0.08
879 7 0.00
881 1 0.00
882 1 0.00
883 1 0.00
885 1 0.00
887 75 0.02
888 84 0.02
889 388 0.09
890 255 0.06
891 395 0.09
892 83 0.02
893 110 0.03
894 412 0.10
895 223 0.05
896 18 0.00
897 84 0.02
898 51 0.01
899 63 0.01
900 1 0.00
901 130 0.03
902 84 0.02
903 31 0.01
904 203 0.05
905 261 0.06
908 46 0.01
911 51 0.01
912 29 0.01
913 5 0.00
914 11 0.00
915 21 0.00
916 24 0.01
918 17 0.00
919 8 0.00
920 2 0.00
921 58 0.01
922 17 0.00
923 24 0.01
924 68 0.02
925 136 0.03
926 87 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAA
AATTTTTTCGGAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTT
CTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGT
GGGATGCGCAAGCCGGGGATCGCCGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCC
TTGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
GGGCGGGCGGACGGCAGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
Found at i:12444387 original size:26 final size:26
Alignment explanation
Indices: 12444358--12444410 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12444348 CTGGTCTGAT
12444358 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTGCT-TATG
12444384 CTTAGACTGGGAATGAACTGCTTATG
1 CTTAGACTGGGAATGAACTGCTTATG
12444410 C
1 C
12444411 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTGCTTATG
Found at i:12445760 original size:26 final size:26
Alignment explanation
Indices: 12445724--12445776 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12445714 CTGGTTCGAT
12445724 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
12445750 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
12445776 C
1 C
12445777 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:12446656 original size:26 final size:26
Alignment explanation
Indices: 12446627--12446705 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
12446617 CTGGTCCGCT
12446627 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12446653 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12446679 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12446705 C
1 C
12446706 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12447801 original size:26 final size:26
Alignment explanation
Indices: 12447772--12447824 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12447762 CCGGTCCGAT
*
12447772 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12447798 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12447824 C
1 C
12447825 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12449524 original size:889 final size:884
Alignment explanation
Indices: 12447019--12451241 Score: 5754
Period size: 889 Copynumber: 4.7 Consensus size: 884
12447009 TTCCCTCTGT
* * * ** *
12447019 GTGCTGTCGATCCTACTACCTCAACCCTCTGTCTAGT-TCGATCTTAGACTGGGAATGAACTCCG
1 GTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCA
* * * * *
12447083 TATGCCTAAGCCAACTGACGAAAA-GAG-TGGGCGGGCGGGCACTACGCCGGCCAGGGAGATGGG
65 TATGCCTAAGCCAACCGACGAAAACGAGCAGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGG
* * *
12447146 ATGCGCAAGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGCCACATCTTCATATTTCTATGTGC
130 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGC
12447211 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
195 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
12447276 GGCAAGACGATTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGATTCGGGATTTTGTAA
260 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* * *
12447341 AATTTTTTCGAAAGAAGTTTTGGCTCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCAT
325 AATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
12447406 GCACAAAAAACTTCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTT
390 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
12447471 CCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
455 CCCATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
*
12447536 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCA
520 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * ** * * * *
12447601 TCGTACATCAAGTGGGAACAACCCCCTTGGCCCCCCTGATCGTTGGAACCCCAATGCCG-CTGAT
585 TCGCACATCATGTGCGCAC-ACCCCCCCGACCCCCC-GATCGTCGGAAACCCAATGCCGTC-GGT
* * * ** * *
12447665 CAGGTTCTCCGGCGATGCTTCAACGATAGTGCCTGGCGAAGAAAAATGTGGCACCAGCACTTGCC
647 CAGGTTCTCCGGCGATG-------G-T-G-CCCCGACGAAGAAAAATGCAGCACCAACACATGCC
* * * * ** * * *
12447730 CGAGCCCAGCATGTGCTGTCACAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
702 CCAGCCCAGCATGTGCAGCCGCAACCCTCCGTCCGGTCTGATCTTAGACTGGGAATCAACTTC--
* * * *
12447795 ATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
765 ATCCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTC
* * * * * * * **
12447860 AGCCTGCCAGAGGGGCGGGATGCGAAAGCCGAGGATTGGACAGGTCCCCCTCTGT
830 AGCCGGCCAGACGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTAC
* * *
12447915 GTGCT-ACTGATCCTGCTACCACAAACCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCA
1 GTGCTGTC-GATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCA
* * * *
12447979 TATGCCTAAGCCAACCGACG-AAACGAGC-GGGCGGGCGGGTACTACACCGGCCAGACAGACGGG
65 TATGCCTAAGCCAACCGACGAAAACGAGCAGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGG
*
12448042 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC
130 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGC
12448107 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
195 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
12448172 GGCAAGACGACTCCTTTTCTCTTTTTCATGATTTTTGAAACTTTTTAAGGTTC-TGATTTTTTAA
260 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* * * * * * *
12448236 AATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGATGTAACCCTAGTATTTTTGTTGTCAT
325 AATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
12448301 GCA-TAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
390 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
12448365 CCCATTTCAGAG-ACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
455 CCCATTTCAG-GCACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGG
* * *
12448429 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGGCAAGTTCCAGTACCC
519 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
12448494 ATCGCACATCATGTGCGCACACCCCCCAG-CCTCCCTGATCGTCGGAACCCCAATGCCGTCGGTC
584 ATCGCACATCATGTGCGCACACCCCCCCGACC-CCCCGATCGTCGGAAACCCAATGCCGTCGGTC
*
12448558 AGGTTCTCCGGCGATGGTGCCCGGACGAAGAAAAATGCAGCACCAACACATGCCCCAGCCCAGCA
648 AGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCCAGCCCAGCA
* * * * *
12448623 TGTGCTGCCGCAACCCTCCGTCTGGTCTGATCTTAGATTGGGAATCAGCTTCA-CCTTAGATTGG
713 TGTGCAGCCGCAACCCTCCGTCCGGTCTGATCTTAGACTGGGAATCAACTTCATCCTTAGACTGG
* * *
12448687 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGGGGGTGCTCAACCGGCCAGACA
778 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGCCAGACG
* * **
12448752 GGTGGGATACGCAAGTTGGGGATCGGTCGGGTCCCCCTCTAC
843 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTAC
* ** **
12448794 GTGCTGTCGATCTTGCGGCCGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCAT
1 GTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCAT
* * * *
12448859 ATGCCTAATCCAACCGATGAAATGAGCGAGCAGGTAGGCGGGCAGGCACTACGTTGGCCAGAGAG
66 ATGCCTAAGCCAACCGACGAAA--A-CGAGCA-G--GGCGGGCGGGCACTACGCTGGCCAGAGAG
* *
12448924 ACGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
125 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
** *
12448989 TGTGCCAATGCTGTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGT
190 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * *
12449054 TTCATGGCAAGACGACTAGTTTTCTATTTTTCATGATTTTTGAAACTTGTTGCGGTTCGGGATTT
255 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTT
* *
12449119 TTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTT
320 TTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
12449184 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
385 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * *
12449249 GTGTCCCCATTTTAGGCACTTTAATGGCTACTAGCAGTAAACCTATAAAATCTTAAATGCTCTTT
450 GTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
12449314 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
515 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
12449379 ACCCATCGCACATGATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAAACCCAATGCCGTCG
580 ACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAAACCCAATGCCGTCG
*
12449444 GTCAGCTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCCAGCCCA
645 GTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCCAGCCCA
* * * * * * *
12449509 GCTTGTGCAGCCGCAACCCTCCATCCAGTCTGATGTTAGATTGGGAATCAGCTTC-GCCTTAGAC
710 GCATGTGCAGCCGCAACCCTCCGTCCGGTCTGATCTTAGACTGGGAATCAACTTCATCCTTAGAC
* * *
12449573 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGGGGGTGCTCAGCCGACCAG
775 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGCCAG
* * * *
12449638 ACGGGTGGGATGCGCAAGCTGGGGATCGGTTGGGTCCTCCTCTAC
840 ACGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTAC
* * * * ** *
12449683 GTGCTGCCAATCTTGCTGCCGCAACCCTC-GATTTGGTCTGATCTTAGACTAGGAATGAACTCCA
1 GTGCTGTCGATCCTGCTACCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCA
* * * * *
12449747 TATGCCTAATCCAACTGATGAAACGAGCGAGCAGGCAGGCGGGCAGGCACTACGTTGGCCAGAGA
65 TATGCCTAAGCCAACCGACGAAA--A-CGAGCA-G--GGCGGGCGGGCACTACGCTGGCCAGAGA
*
12449812 GACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
124 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
12449877 GTGTGCCAATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
189 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
** * *
12449942 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGAGATT
254 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
12450007 TTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGT
319 TTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
12450072 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
384 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
12450137 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTT
449 AGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
* * *
12450202 TAAGGGGGCGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCGATATAAGGGCCAAGTACCAG
514 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
12450267 CACCCATCCCACATCATGTGCGCACACCCCCCCGACCCCCTGATCGTC-GAAACCCCAATGCCGT
579 CACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAAA-CCCAATGCCGT
** * **
12450331 CGGTCAGGTTCTCCGGTGATGCTCCAACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGTAC
643 CGGTCAGGTTCTCC---G--G------CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACAC
* * * * *
12450396 ATGCCCGAGCCCAGCATGTGCTA-TCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAA
697 ATGCCCCAGCCCAGCATGTGC-AGCCGCAACCCTCCGTCCGGTCTGATCTTAGACTGGGAATCAA
* * * * *
12450460 CTTTGTATGCGTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
761 C-TT-CATCCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGG
* * * * ** *
12450525 GTGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCTAGTCCCCCTCTGC
824 GTGCTCAGCCGGCCAGACGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTAC
* * * * * * *
12450586 ATGCTGTCGATCCTACTACCGCAACCCTCGGTCCAGACCGATCTTAGACTGGGAATGAACTCCGT
1 GTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCAT
* *
12450651 ATGCCTAAGCCAACCGACG-AAATGAGC-GGGCGGGCGGGCACTACGCTAGCCAGAGAGACGGGA
66 ATGCCTAAGCCAACCGACGAAAACGAGCAGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGA
* * * **
12450714 TGTGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTGCATGCC
131 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCC
*
12450779 AATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
196 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * ** *
12450844 GCAAGATGACTCGTTTTTGTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGGTTTTTTAA
261 GCAAGACGACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* * * *
12450909 AATTTTTTCGTAAGGAGTTTTGGCCCCAAACTTGGCAGACATGATCCTTGTATTTTTGTTGGCTT
325 AATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
12450974 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTC
390 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
12451039 CCTATTTTGAGGCACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGG
455 CCCA-TTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGG
* * *
12451104 GGGTGTGAGTTCTCAACGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCC
519 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
12451169 ATTGTACAT-ATGTGCGCACACCCCCCCGACCCCCCCGATCG-CCGAAACCCTAATGCCG-CTGG
584 ATCGCACATCATGTGCGCACACCCCCCCGA-CCCCCCGATCGTCGGAAACCC-AATGCCGTC-GG
12451231 TCAGG-TCTCCG
646 TCAGGTTCTCCG
12451242 TTATGGCTTG
Statistics
Matches: 2996, Mismatches: 286, Indels: 93
0.89 0.08 0.03
Matches are distributed among these distances:
879 169 0.06
880 4 0.00
882 81 0.03
883 6 0.00
884 1 0.00
885 2 0.00
887 199 0.07
888 75 0.03
889 1076 0.36
890 2 0.00
892 43 0.01
893 12 0.00
894 195 0.07
895 238 0.08
896 476 0.16
897 155 0.05
899 4 0.00
900 86 0.03
901 3 0.00
902 2 0.00
903 166 0.06
904 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
GTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCAT
ATGCCTAAGCCAACCGACGAAAACGAGCAGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
ATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGG
TTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCCAGCCCAGCATGT
GCAGCCGCAACCCTCCGTCCGGTCTGATCTTAGACTGGGAATCAACTTCATCCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGCCAGACGGGC
GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTAC
Found at i:12450493 original size:26 final size:26
Alignment explanation
Indices: 12450445--12450495 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12450435 GGTCTGATCT
**
12450445 TAGACTGGGAATGAACTTTGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
*
12450471 TAGACTGGTAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
12450496 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:12453029 original size:26 final size:26
Alignment explanation
Indices: 12453000--12453052 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12452990 CCGGTCCAAT
* * *
12453000 CTTAGACTGTGAATTAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
*
12453026 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
12453052 C
1 C
12453053 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:12454006 original size:891 final size:876
Alignment explanation
Indices: 12451382--12454018 Score: 3150
Period size: 891 Copynumber: 3.0 Consensus size: 876
12451372 TGCTATCAAT
* * * * * **
12451382 CCTCTGTGTGCTATCGATCATGCTACCGCAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGA
1 CCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAATCCGGT-CGATCTTAGACTGGGAATGA
* * ** * * * * * * *
12451447 ACTTCGTATGCCTAAGCCAATCGACGAAACGAGCAGACAAGCGGGTGGGCGGGCGCTATGTCGGC
65 ACTCCGTATGCCTAAGCCAACCGACGAAAAAAACAGGCAGGCGGGCGGGCGGGCACTACGCCGGC
**
12451512 CAGAGAGACGGGATGCGTAA-AAAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
130 CAGAGAGACGGGATGCGTAAGCCA-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
12451576 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
194 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* **
12451641 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCATGATTTTTGAAACTTTTTGTGGTT
259 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTT
* *
12451705 CGAGATATTTT-AAAATTTTTTCGTAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
323 CGAGATTTTTTAAAAATTTTTTCGGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
12451769 ATTTTTGTTGGCATGCAGAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCAT
388 ATTTTTGTTGGCATGCACAAAAAAATTCTGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
12451834 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAGAATCTCGA
453 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
12451899 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCA
518 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
*
12451964 AGTACCAGCACCCATC-TCACATCATGTGCGCACACCCCCCGGCCCCCCCGA-TCGCGAGA-AC-
583 AGTACCAGCACCCATCGT-ACATCATGTGCGCACACCCCCCGACCCCCCCGATTCG-GA-ACACA
* **
12452025 -T--C-CAA-T--G-TCTCCGGTGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
645 ATGCCGCAATTAGGTTCTCCGGTGATGCTCCGACGATGGTG-CCCGGTGAAGAAAAATGCGGCAC
* *
12452082 CAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGA
709 CAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-TCTGATCTTAGACTGGGA
* * *
12452147 ATGAACTCCGTATGCCTAAGTCAACCCACG-AAAC-G-A-GC-GTC-CAGGCGCTCAGCCAGCCA
773 ATGAACTCCGTATGCCTAAGTCAACCGACGAAAACAGCAGGCAGGCGCGGGCGCTCAGCCAGCCA
*
12452206 GAGGGACGGGAT-CTGCAAGCCGGGGATCGACCGAGTCCC
838 GAGGGACGGGATGC-GCAAGCCGGGGATCGATCGAGTCCC
*** ** * *
12452245 CCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTTGGTCTAGTGCAATCTTAGAATGGGAATGA
1 CCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAATCCGGT-CGATCTTAGACTGGGAATGA
* * * * * * *
12452310 AATCCATATGCCTAAGCCAACCGATGAAAAAAACAGGCTGACGGGCGGACGGGCACTGCGCCGGC
65 ACTCCGTATGCCTAAGCCAACCGACGAAAAAAACAGGCAGGCGGGCGGGCGGGCACTACGCCGGC
*
12452375 CAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
130 CAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *** *
12452440 CTTTCTATGTGCCAATGCCATTTTCT-TGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCA
195 ATTTCTGCATGCCAATGCCATTTT-TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
12452504 CATGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAAACTTTTTAGGGTT
259 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTG-AAACTTTTTACGGTT
* * * * *
12452569 TGGGA-TTTTTAAAAATTTTATT-GGAAGTAGTTTTGACCCCAAACATGGTAGACGTGATCCTTG
323 CGAGATTTTTTAAAAATTTT-TTCGGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* **
12452632 TATTTTTGTTGGCGTGTGCAAAAAAATT-TAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
387 TATTTTTGTTGGCATGCACAAAAAAATTCT-GCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
12452696 ATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTC
451 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * ** *
12452761 AAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATAAGGGAT-GGAGGGAAAATATGAGGG
516 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG-GGGCCAATATAAGGG
* * *
12452825 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-AGCCCCCTGATCGTCGGAATC
580 CCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGACCCCCCCGAT--TCGGAA-C
* * * * * *
12452889 CCAAAGCCGCCGATCAGGTTCTCTGGTGA---T--G--G-T-G-GCCCGGTGAAGAAAAATTCGG
642 ACAATGCCG-CAATTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCGGTGAAGAAAAATGCGG
* *
12452944 CACCAGCACATGCCAGAGCCCAGCATGTGTTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTG
706 CACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-G--------T---C--
*
12453009 TGAATTAACTCCATATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AAAC-
757 TG-A-T--CT---TA-G-----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAAACA
* * *** *
12453072 G-A-GCA--TGCGGGCGCTCAGCCAGCCAAAGGGGTAGGACGCGCAAGCCGGGGATCGATCGAGT
809 GCAGGCAGGCGCGGGCGCTCAGCCAGCCAGAGGGACGGGATGCGCAAGCCGGGGATCGATCGAGT
12453133 CCC
874 CCC
* * * * * *
12453136 CCTCTGCGTGTTGCCGATCCTGTTGTCGTAACCCTCAATCCGGTCTGATCTTACACTGGGAATGA
1 CCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAATCCGGTC-GATCTTAGACTGGGAATGA
* **
12453201 ACTCCGTATGCCTAAGCCAACCGACGAAAAAAACGGGCAGGCAAGCGGGCGGGCACTACGCCGGC
65 ACTCCGTATGCCTAAGCCAACCGACGAAAAAAACAGGCAGGCGGGCGGGCGGGCACTACGCCGGC
* *
12453266 CAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCAT
130 CAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
12453331 ATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCAC
195 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
12453396 GTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCACGATTTGTGCAACTTTTTACGGTTC
260 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT-TGAAACTTTTTACGGTTC
* * * *
12453461 GAGATTTTTTAAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTACACATGATCCTTGTA
324 GAGATTTTTTAAAAATTTTTTCGGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
**
12453526 TTTTTGTTGGCATGCACAAAAAAATTCTGCCGCAAAACTCGAAGTGTACAAGATTTTGTGACCAT
389 TTTTTGTTGGCATGCACAAAAAAATTCTG-CTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
12453591 TTGAAAAAAGTGTCCACATTTCATACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAA
453 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
12453656 ATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCA
518 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
** * *
12453721 AGTACCAGCACCCATCGTACATCATGTGCATACGCCCCCCGACCCCCCCGATTTTTGGAACACTA
583 AGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGACCCCCCCGA--TTCGGAACAC-A
12453786 ATGCCGTCAATTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGCGGCA
645 ATGCCG-CAATTAGGTTCTCCGGTGATGCTCCGACGATGGTGCC-CGGTGAAGAAAAATGCGGCA
* * * * *
12453851 CCAGCACATGCCCGAACCCAGCATGTGCTGCCGCAACACTCGGTCCAGTTTGATCTTACACTGGG
708 CCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACTGGG
* * *
12453916 AATGAACTTCGTATGCCTAAGCCAACCGACGAAAAAAACAGGCAGGCAGGCGGGCGGGCACT-AT
772 AATGAACTCCGTATGCCTAAGTCAACCGACG---AAAACA-GCAGGCAGGC--GCGGGCGCTCA-
* * **
12453980 GCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGAT
830 GCCAGCCAGAGGGACGGGATGCGCAAGCCGGGGATCGAT
12454019 AGGGTGGTAG
Statistics
Matches: 1496, Mismatches: 189, Indels: 150
0.82 0.10 0.08
Matches are distributed among these distances:
863 269 0.18
864 285 0.19
865 65 0.04
866 6 0.00
867 1 0.00
868 1 0.00
869 1 0.00
870 1 0.00
872 2 0.00
873 2 0.00
875 1 0.00
876 10 0.01
878 2 0.00
879 35 0.02
880 1 0.00
882 2 0.00
883 4 0.00
885 5 0.00
886 2 0.00
887 3 0.00
888 2 0.00
890 4 0.00
891 417 0.28
892 80 0.05
893 187 0.12
894 37 0.02
896 1 0.00
897 2 0.00
899 1 0.00
901 1 0.00
902 1 0.00
903 1 0.00
904 3 0.00
905 61 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (876 bp):
CCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAATCCGGTCGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGACGAAAAAAACAGGCAGGCGGGCGGGCGGGCACTACGCCGGCC
AGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAACTTTTTACGGTTCGA
GATTTTTTAAAAATTTTTTCGGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTGTTGGCATGCACAAAAAAATTCTGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGACCCCCCCGATTCGGAACACAATGCCG
CAATTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCGGTGAAGAAAAATGCGGCACCAGCACA
TGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCGACGAAAACAGCAGGCAGGCGCGGGCGCTCAGCCAGCCAGAGGGACG
GGATGCGCAAGCCGGGGATCGATCGAGTCCC
Found at i:12454652 original size:25 final size:26
Alignment explanation
Indices: 12454624--12454675 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12454614 CCGGTCCGAT
12454624 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12454649 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12454675 C
1 C
12454676 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12455115 original size:735 final size:731
Alignment explanation
Indices: 12453185--12455384 Score: 3073
Period size: 735 Copynumber: 3.0 Consensus size: 731
12453175 CCGGTCTGAT
12453185 CTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAAAACGGGCAGGCAAGCGGG
1 CTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--AAAAA--GGCAGG---GCGGG
12453250 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
59 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* * *
12453315 TTAGGCACACCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGG
124 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
12453380 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCACGATTTGTG
189 TCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT-TG
*
12453445 CAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGT
253 AAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGT
* * **
12453510 ACACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCTGCCGCAAAACTCGAAGTGTAC
317 AGA-ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-CTAAAAACTCGAAGTGTAC
* *
12453575 AAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCATACACTTTAATGGCCACTGGCAGCAA
380 AAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
12453640 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACG-TTTGGTGAGGGATAGGG
445 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-GGATTTGATGAGGGATAGGG
* *
12453704 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGT--GCATACGCCCCCCGACCCC
509 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACAC-CCCCCCGA-CCC
* * ** * * * *
12453767 CCCGATT-TTTGGAACACTAATGCCGTCAATTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCT
572 CCCGATTCGTCGGAAC-CCCATGCCGTCAATCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
** * *
12453831 CGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCCGCAA-CA-C-T-C
636 CGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCATCGTCC
12453892 GGTC---C-AG--T----T----T--G-AT-
701 GGTCGATCTAGACTGGAATGAACTCCGTATG
*
12453905 CTTACACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAAAAACAGGCAGGCAGGCGGG
1 CTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG---AAAA-AGGCA-G--GGCGGG
*
12453970 CGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
59 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
12454035 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
124 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
12454100 TCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
189 TCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTG
* * * * * **
12454165 AAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTTGGAAGGAGTTTTATCCCCAAACTTGGTA
253 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTA
* *
12454230 GACGA-GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAGAAACTCAAAGTGTACA
318 GA--ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
12454294 AGATTTTGTGACCATTTGAAAAAAGTGTTCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
381 AGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
12454359 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGGGATTTGATGAGGGATAGTGGG
446 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGGGATTTGATGAGGGATAGGGGG
* *
12454424 CCAATATAAGGGCCAAGTACCAGCACCCATCAAACATCATGTGCGCACACCCCCCCGGGCACCCC
511 CCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCCC-GAC-CCCC
* * * *
12454489 C-ATTCGTCGGAACCCCATACCGTCGATCAGGTTCTCCGGCGACGCTCCGGCGTTGGTGCCCCGA
574 CGATTCGTCGGAACCCCATGCCGTCAATCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* * *
12454553 CGAAGAAAAATGTGGCACCAACACATGCCCGAGCCTAGCATGTTCTGCCGCAACCATCAGTCCGG
639 CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCATC-GTCCGG
12454618 TCCGATCTTAGACTGGAATGAACTCCGTATG
703 T-CGATC-TAGACTGGAATGAACTCCGTATG
*
12454649 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAAAGTGC-GGGCGGGCGGGCA
1 CTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAAG-GCAGGGCGGGCGGGCA
* * * *
12454712 CTACGCCGGCCAGGGAGGCGGGATGCGCAAGGCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
65 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
12454777 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
130 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
12454842 AAGCGTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTGAAACTTT
195 AAGCGTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAACTTT
* *
12454907 TTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGAATTGA
260 TTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGAA-TGA
12454972 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
324 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * *
12455037 AGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAA
389 TGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
12455102 ATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCAAGGA-TTGATGAGGGATAGGGGGCCAATAT
454 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GGGATTTGATGAGGGATAGGGGGCCAATAT
* *
12455166 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCGA-TCGCC
518 AAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCCCGACCCCCCGATTCGTC
* ** * * *
12455229 AGAACCCCAATGCCACCAGTCAGGTTCTCCGACGATAC-CCGTGACGATGGTGCCCCGACGAAGA
583 GGAACCCC-ATGCCGTCAATCAGGTTCTCCGGCGATGCTCCG-G-CGATGGTGCCCCGACGAAGA
* * * * * * *
12455293 AAAATACGACAGCAACACATGCCCGAGCCCAGCAGGTGCTGCCGTAACCCTCGATCCGGTTTGAT
645 AAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCATCG-TCCGG-TCGAT
12455358 CTCAGACTGGGAATGAACTCCGTATG
708 CT-AGACT-GGAATGAACTCCGTATG
12455384 C
1 C
12455385 CTAAGTCAAC
Statistics
Matches: 1326, Mismatches: 104, Indels: 85
0.88 0.07 0.06
Matches are distributed among these distances:
717 1 0.00
718 177 0.13
719 170 0.13
720 277 0.21
721 11 0.01
722 1 0.00
723 2 0.00
724 4 0.00
725 1 0.00
728 1 0.00
730 2 0.00
732 20 0.02
733 28 0.02
734 82 0.06
735 305 0.23
736 192 0.14
738 1 0.00
739 2 0.00
740 6 0.00
742 1 0.00
743 2 0.00
744 40 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (731 bp):
CTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAAGGCAGGGCGGGCGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCGTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAACTTTT
TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGAATGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGGGATTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCCCGACCCCCCGATTCGTCGGA
ACCCCATGCCGTCAATCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG
CGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCATCGTCCGGTCGATCTAGACTG
GAATGAACTCCGTATG
Found at i:12456686 original size:884 final size:877
Alignment explanation
Indices: 12454649--12458038 Score: 4431
Period size: 904 Copynumber: 3.8 Consensus size: 877
12454639 ACTCCGTATG
* * *
12454649 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A--GTGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCAGG
* * *
12454710 CACTACGCCGGCCAGGGAGGCGGGATGCGCAAGGC-GTGGATCGATAGGGTGGTAGGTGGGTTTA
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAA-GCTGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
12454774 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
130 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
12454839 CTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGA-TTTTGAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * ** *
12454903 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGAA
260 CTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAACTTGGTAGAC
*
12454968 TTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
12455033 TTTGAGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
12455098 TAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCAAGGATTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
12455163 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCG-
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCGCACACCCCCCCACCCCCCGATCGT
* * *
12455227 CCAGAACCCCAATGCCACCAGTCAGGTTCTCCGACGATAC-CCGTGACGATGGTGCCCCGACGAA
585 CTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATACTCC--GACGATGGTGCCCCGACGAA
* * * * * *
12455291 GAAAAATACGACAGCAACACATGCCCGAGCCCAGCAGGTGCTGCCGTAACCCTCGATCCGGTTTG
648 GAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCTG
*
12455356 ATCTCAGACTGGGAATGAA---C-T-CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGT
713 ATCTTAGACTGGGAATGAACTCCGTACCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGT
* * *
12455416 GCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTACATGTTG
778 GCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC-GGGTCCCCCTCTACATGCTG
* * *
12455481 CCGATCTTG-TTGCCACAACCCTTAGTCTGGTCCAAT
842 TCGATCCTGCTT-CCACAACCCTCAGTCTGGTCCAAT
* * *
12455517 CATAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCTACGAAACGAGCGAGCGGACGGGCAGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCAGG
* * *
12455582 CACTACGTCAGCCAGAGAGAC-GGATGCGTAAGCTGTGGATCGATAGGGTGGCAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** **
12455646 GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGAATTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
12455711 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
12455776 TTTTTACGGTTCGAGATTATTTAAAATTTTTTCAGAAGGAGGTTTGGCCCCAAACTTGGTAGCCG
261 TTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAACTTGGTAGACG
* *
12455841 TGATCCTTGTATTTTTGTTTG-ATGCACAAAAAAATTCAGCTAAAAACTCGTAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
12455905 TTGTGACCATTTG-AAAAAGTTTCCCCATTCCAGATAGTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
12455969 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
12456034 ATAAGGGCCAAGTACCAGCACCCATCGCACATAATTTGCGCACACCCCCTGCCATGCCCCTCCGA
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCGCACACCCCC--CCA--CCCC-CCGA
* * * * * * *
12456099 TC-TCTGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGATGCCCCGATG
581 TCGTCTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATACTCCGACGATGGTGCCCCGACG
* * * *
12456163 AAGAAAAATATGGCACCAACACATGCCCAAGCCCAGCATGTGGTGCCGCAACCCTTGATCCGATC
646 AAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATC
*
12456228 CGATCTTAGACTGGGAATGAACTCCGTACCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
711 TGATCTTAGACTGGGAATGAACTCCGTACCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * ***
12456293 GTGCTTAGCCGGCCAGAGGGGCGGGATGTGCAATCCGGGGGTCAGTCGGGTCCCCCTCTGTGTGC
776 GTGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACGGGTCCCCCTCTACATGC
* ** *
12456358 TATCGATCCTGCTTCTGCAACCCTCAGTCTGGTCTAAT
840 TGTCGATCCTGCTTCCACAACCCTCAGTCTGGTCCAAT
*
12456396 CTTAGACTGGGAATGAAC-TCTGTATGCCTAAGCCAACCGACGAAATGAGCGAGTGAGCGGGCGG
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACG-AA--A-CGAGCGAGCGGGCGG
* * * * * *
12456460 GCGGGCACTACGTCGGCCAGAGAGATGGGATGCACAAGTTGTGGATCGATAGGGCGGTCGGTGGG
61 GCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGG
* * * * *
12456525 TTTGGGCACACCTTCATATTCCTACATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATA
126 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
12456590 GTCCCTTAAGCGTTCACGTGCAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** * * * * *
12456655 AAAACTTTTTGTAGTTCGAGATTTTTTAAAATTTCTTCGGAAGGAGGTTTGGTCCTAAACTTAGA
256 GAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAACTTGGT
* * * *
12456720 AGACGTAATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTTGAAGTGTACA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
12456785 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
12456850 CCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
12456915 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAA-GTGCGTACACCCCCCCGGGCCCCC
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT-AATGTGCGCACACCCCCCC--ACCCCC
* * * *
12456979 TGATCGCCT-GAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATACTCCAACGATGGTGCCCCG
578 CGATCGTCTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATACTCCGACGATGGTGCCCCG
* * * * * * * *
12457043 GCAAAGAAAAATGCGGCACCAACACATGCCCTAGCCCCGCATGTGCTGCCGCCACCCTCGGTTCG
643 ACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCG
*
12457108 GTCTGATCTTAGA-TAGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
708 ATCTGATCTTAGACT-GGGAATGAA---C---T-C-----C---G--T--AC--CGTATGCCTAA
* * *
12457172 GTCAACCCACGAAACGAGCGTGCAGGCG-TTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGG
751 GTCAACCCACGAAACGAGCGTGCGGGTGCTT-AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * ** *
12457236 GATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTGCCACAACCCTCGGTCCAGTCCGAT
815 GATCGA-CGGGTCCCCCTCTACATGCTGTCGATCCTGCTTCCACAACCCTCAGTCTGGTCCAAT
* *
12457300 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAACGAAAGGGCGAGCGGGAGGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACG--A--GCGAGCGGGCGGG
* * * *
12457365 CAGGTACTACGTCGGCCAGAGAGACAGGATGTGCAAGCTGTGGATCGATAGTGTGGTAGGTGGGT
62 CAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGT
*** * *
12457430 TTAGGCACATCTTCATATTTCTGTGTTG-CAATGCCATTTTTATGGCTTGTAAATTCATATAGTG
127 TTAGGCACATCTTCATATTTCT-ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
12457494 GTCCCTTAGGCCTTCACGTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTATCACGATTTTT
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
12457559 TAATCTTTTTACAGTTCGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
256 GAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAACTTGGT
* * *
12457624 AGGCGTCG-TCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAGCTCGTAGTGTAC
321 AGACGT-GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
12457687 AAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCGGCGA
385 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
12457752 ACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
450 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* ** * * * **
12457817 GCCAATATAAGGGACAAGTAGTAGCACCCATCGCACATCATGTGTGCACACCTCCCGGCCCCCTC
515 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCGCACACCCCCCCACCCCC-C
** * * * *
12457882 GATCGTC-AGAACCCCAATGTTGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTCCCCCGG
579 GATCGTCTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATACTCCGACGATGGTGCCCCGA
* *** * * * * * * *
12457946 CGAAGAAAAATATGGTGGCAGCACATGCTCGAGCGCAGCATATGCTGTCGCAACCCTCGGTCTGA
644 CGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGA
* *
12458011 TCTGATCTTAGATTGGGATTGAACTCCG
709 TCTGATCTTAGACTGGGAATGAACTCCG
12458039 CATGCTTAGA
Statistics
Matches: 2190, Mismatches: 265, Indels: 115
0.85 0.10 0.04
Matches are distributed among these distances:
868 42 0.02
870 158 0.07
871 204 0.09
872 117 0.05
874 93 0.04
875 39 0.02
876 2 0.00
877 1 0.00
878 3 0.00
879 154 0.07
880 6 0.00
882 2 0.00
883 162 0.07
884 232 0.11
885 53 0.02
886 156 0.07
887 3 0.00
889 1 0.00
890 2 0.00
895 2 0.00
896 1 0.00
898 1 0.00
899 1 0.00
900 3 0.00
901 7 0.00
902 127 0.06
903 203 0.09
904 411 0.19
905 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (877 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCAGG
CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCGCACACCCCCCCACCCCCCGATCGTC
TAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATACTCCGACGATGGTGCCCCGACGAAGAA
AAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCTGATC
TTAGACTGGGAATGAACTCCGTACCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
TAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACGGGTCCCCCTCTACATGCTGTCGA
TCCTGCTTCCACAACCCTCAGTCTGGTCCAAT
Found at i:12457152 original size:26 final size:26
Alignment explanation
Indices: 12457115--12457167 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12457105 TCGGTCTGAT
12457115 CTTAGATAGGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
*
12457141 CTTAGACT-GGGAATGAACTTCGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
12457167 C
1 C
12457168 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:12458444 original size:26 final size:26
Alignment explanation
Indices: 12458408--12458458 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12458398 GGTCCGATCC
12458408 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
12458434 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
12458459 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:12458532 original size:389 final size:392
Alignment explanation
Indices: 12457797--12458552 Score: 884
Period size: 389 Copynumber: 1.9 Consensus size: 392
12457787 GAGTTCTCGA
* * **
12457797 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTAGTAGCACCCATCGCACATCATGTGT
1 GGTTTGATGAAGGAGAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCA-GTGT
** *
12457862 GCACACCTCCCGGCCCCCTCGATCGTCAGAACCCCAATGTTGCTGGTCAGGTTCTCCGACGATGC
65 GCACACCT--C-GCCCCCTCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * *** * *
12457927 TCCGACGATGGTCCCCCGGCGAAGAAAAATATGGTGGCAGCACATGCTCGAGCGCAGCATATGCT
127 TCCGACGATGGTCCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATATGCT
* * * * * * *
12457992 GTCGCAACCCTCGGTCTGATCTGATCTTAGATTGGGATTGAACTCCGCATGCTTAGACTAGGAAT
192 ATCGCAACCCTCAGTCTGATCCGATCCTAGACTGGGAATGAACTCCACATGCTTAGACTAGGAAT
* * * ** *
12458057 GAACACGATATGCCTATGTCAACCCATGGAACGAGCGTGCGAGCGCTTAGCCGGCCAGAGGGGAG
257 GAACACGATATGCCTAAGTCAACCCACGAAAAAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGAG
* * **
12458122 GGATGTTCAAGCCAAGGATCGGCCGGGTCACCCTCTGCGTGCTGTTGATCCTGCTATTGCAACCC
322 GGATGGTCAAACCAAGGATCGG-CAAGTCACCCTCTGCGTGCTGTTGATCCTGCTATTGCAACCC
12458187 TCGGTCT
386 TCGGTCT
* *
12458194 GGTTTGATGAAGGAGAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCA-TGTG
1 GGTTTGATGAAGGAGAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCAGTGTG
*
12458258 CACA-CT-GCCCCC-CGATCGTC-GAAACCCCAATGCCGCCGGTCAGGTTCTCC-AGTGATGCTC
66 CACACCTCGCCCCCTCGATCGTCAG-AACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTC
* * * * * *
12458318 C-AGTGATGGTGCCCCGGCAAAGAAAATTACGGCACCAGCACATGCCCGAGCCCAGCTTGTGTTA
129 CGA-CGATGGTCCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATATGCTA
* * * *
12458382 TGGCAACCCTCAGTCTGGTCCGATCCTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATG
193 TCGCAACCCTCAGTCTGATCCGATCCTAGACTGGGAATGAACTCCACATGCTTAGACTAGGAATG
* * *
12458447 AACTCCG-TATGCCTAAGTCAGCCCACGAAAAAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA
258 AAC-ACGATATGCCTAAGTCAACCCACGAAAAAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGG-A
* ** *
12458511 -GGATGCGT-AAATCGGGGATCGGCAAGTCCCCCTCTGCGTGCT
321 GGGATG-GTCAAACCAAGGATCGGCAAGTCACCCTCTGCGTGCT
12458553 ACCAATCCTG
Statistics
Matches: 302, Mismatches: 51, Indels: 21
0.81 0.14 0.06
Matches are distributed among these distances:
388 20 0.07
389 208 0.69
390 10 0.03
394 2 0.01
395 8 0.03
397 54 0.18
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (392 bp):
GGTTTGATGAAGGAGAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCAGTGTG
CACACCTCGCCCCCTCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
ACGATGGTCCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATATGCTATCG
CAACCCTCAGTCTGATCCGATCCTAGACTGGGAATGAACTCCACATGCTTAGACTAGGAATGAAC
ACGATATGCCTAAGTCAACCCACGAAAAAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGAGGGAT
GGTCAAACCAAGGATCGGCAAGTCACCCTCTGCGTGCTGTTGATCCTGCTATTGCAACCCTCGGT
CT
Found at i:12459311 original size:26 final size:26
Alignment explanation
Indices: 12459272--12459324 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12459262 CTGGTCTGAT
12459272 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
**
12459298 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
12459324 C
1 C
12459325 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:12460182 original size:26 final size:26
Alignment explanation
Indices: 12460143--12460195 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12460133 CTGGTCTGAT
12460143 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
**
12460169 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
12460195 C
1 C
12460196 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:12460240 original size:871 final size:873
Alignment explanation
Indices: 12458269--12461741 Score: 4752
Period size: 871 Copynumber: 4.0 Consensus size: 873
12458259 ACACTGCCCC
* * * *
12458269 CCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCAGTGATGGTGCCCCG
1 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCA-CGATGCTCCGGTGATGGTGCCCCG
* * * * *
12458334 GCAAAG-AAAAT-TACGGCACCAGCACATGCCCGAGCCCAGCTTGTGTTA-TGGCAACCCTCAGT
65 ACGAAGAAAAATGTA--GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGG-AACCCTCAGT
* ** *
12458396 CTGGTCCGATCCTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCT
127 CTGGTCCGATCTTAGACTACGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* ** * * **
12458461 AAGTCAGCCCACGAAAAAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAATCGG
192 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* ** * * * ** ** **
12458526 GGATCGG-CAAGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCACAACCCTTTGTCTGGTCTGAT
257 GGATCGGCCGAGTCCCCCTCCACGTGCTGCCAATCCTACTACCGTAACCCTCGGTCTGGTCCAAT
* * *
12458590 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GAGGGTGGG
322 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGG
* * * *
12458647 CGGGCACTACGCCGACCAGAGAGATGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
387 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGG
* *
12458712 TTAGGCACATCTTCATATTTCTACATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGG
452 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * * *
12458777 TCCCTTAGGCCTTCACGTAAAGTTCCATGGCAAGATGACTCGTTTTCTATTTTTCATAATTTTTG
517 TCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTG
* * * * * *
12458842 AAACTTTTTATGGTTCA-GGATTTTTTAAAATTTTTTGGGAAGTAGTTTTGGCCCCAAACTTGGT
582 AAACTTTTTACGGTTTAGGGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCCCCAAACCTAGC
* * ** * *
12458906 AGACGTGATCCTTGCATTTTCATTGGCATGCACAAAAAACATCAGCTAAAAACTCAAAGTGTACA
647 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACA
* * * *
12458971 AGATTTTGTGACCATTTG-AAAAAGCGTCCCCATTTCATACATTTTAATGGCTACTGCCAGCAAA
711 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
12459035 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
776 CCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
12459100 CCAATATAAGGTCCAAGTGCACCCCCCCGACCCT
841 CCAATATAAGGTCCAAGTGCA-CCCCCCGACCCT
**
12459134 CCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTT
1 CC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-ACGATGCTCCGGTGATGGTGCCCC
* * *
12459199 GACGAAGAAAAATGTAGCACCAGCGCATTCCCGAGCCCAGCATGTGCTACCGGAACCCTCGGTCT
64 GACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGGAACCCTCAGTCT
*
12459264 GGTCTGATCTTAGACTACGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
129 GGTCCGATCTTAGACTACGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
12459329 GTCAACCCACGGAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGG-GGGATGCGCAAGCCAGGG
194 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
*
12459393 ATCGGCCGAGTCCCCCTCCACGTGCTGCCGATCCTACTACCGTAACCCTCGGTCTGGTCCAATCT
259 ATCGGCCGAGTCCCCCTCCACGTGCTGCCAATCCTACTACCGTAACCCTCGGTCTGGTCCAATCT
*
12459458 TAGACTAGGAATGAACTCCGTATGCCTAAGCCATCCGACGAAACGAGTGGGCGGGCGGGCGGGCG
324 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCG
12459523 GGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGGTT
389 GGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGGTT
*
12459588 AGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
454 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
12459653 CCTTAAGTCTACACGTGAAGTTTCATGGGAAGACCGACTCGTTTTCTATTTTTCACGATTTTTGA
519 CCTTAAGCCTACACGTGAAGTTTCATGGCAAGA-CGACTCGTTTTCTATTTTTCACAATTTTTGA
*
12459718 AACTTTTTACGGTTTAGGGATTTTTT-AAATTTTTTTGGAAGTAGTTTTGGCCCGAAACCTAGCA
583 AACTTTTTACGGTTTAGGGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCCCCAAACCTAGCA
12459782 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAAGTGTACAA
648 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCG-AAGTGTACAA
*
12459847 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GCTATTGGCAGCAAAC
712 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
12459911 CTGT-AAATTTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
777 CTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
12459975 CAATATAAGGTCCAAGTGCACCCCCCGACCCT
842 CAATATAAGGTCCAAGTGCACCCCCCGACCCT
* *
12460007 CCGATCGCCGGAA-CCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTCG
1 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-ACGATGCTCCGGTGATGGTGCCCCG
* * *
12460071 ACGAAGAAAAATGTAGCACCAGCGCATTCCCGAGCCCAGCATGTGCTACCGGAACCCTCGGTCTG
65 ACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGGAACCCTCAGTCTG
*
12460136 GTCTGATCTTAGACTACGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
130 GTCCGATCTTAGACTACGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
12460201 TCAACCCACGAAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGG-GGGATGCGCAAGCCGGGGA
195 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * *
12460265 TCAGCCGAGTCCCCCTCCATGTGCTGCCGATCCTACTACCGTAACCCTCGGTCTGGTCCAATCTT
260 TCGGCCGAGTCCCCCTCCACGTGCTGCCAATCCTACTACCGTAACCCTCGGTCTGGTCCAATCTT
*
12460330 AGACTAGGAATGAACTCCGTATGCCTAAGCCATCCGACGAAACGAGTGGGCGGGCGGGCGGGCGG
325 AGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCGG
12460395 GCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGGTTA
390 GCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGGTTA
*
12460460 GGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
455 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
12460525 CTTAAGTCTACACGTGAAGTTTCATGGGAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
520 CTTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAA
* * *
12460590 CTTTTTACGG-TTAGGGATTTTTTTGAAATTTTTTTGGAAGCAGTTTTGGCCCGAAACCTAGCAG
585 CTTTTTACGGTTTAGGGA-TTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCCCCAAACCTAGCAG
12460654 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
649 ACATGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
12460719 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACC
713 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
12460784 TGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
778 TGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* *
12460849 AATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCACACACCCCACCGGCCCC
843 AATATAA--G----GT--------------C-CA--A-GTG----CACCCC-CCGACCCT
12460909 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C-CGA-----C---GATGGTGCCCCGA
1 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCACGATGCTCCGGTGATGGTGCCCCGA
** * *** *
12460964 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATCTGCTGTTGCAACCCTCAGTCTGG
66 CGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGGAACCCTCAGTCTGG
* * ** *
12461029 TCCGTTCTTAGTCTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCC-AAGT
131 TCCGATCTTAGACTACGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
12461093 CAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGGGGTGGGATGCGTAAGACGGGGAT
196 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * * *
12461158 CGGTCGGGTCCCCCTCTATGTGCTGCCAATCTTGCTACCGTAACCATCAGTTTGGTCCAATCTTA
261 CGGCCGAGTCCCCCTCCACGTGCTGCCAATCCTACTACCGTAACCCTCGGTCTGGTCCAATCTTA
* * * * * * * ** *
12461223 GACTGGGAAAGAACTCAGTATGCCTAAACCAACCGATGAAATGAGTAGGCGGGCAAGAGGGCGGG
326 GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCGGG
* * * *
12461288 CACTATG-CTAGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGAT-AGAGTGGTAGGTGGGTTT
391 CACTACGCCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAG-GTGGTAGGTGGGGTT
* * *
12461351 AGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATTGTC
454 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
12461416 CCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCATAATTTTTGAA
519 CCTTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAA
* * * * * * *
12461481 ACTTTTTGCGGTTT-GAGATTTTTTAAAA-TTTTTTCGAATGGAGTTTTGGCCCCAAACTTGGTA
584 ACTTTTTACGGTTTAGGGATTTTTTAAAATTTTTTTGGAA-GTAGTTTTGGCCCCAAACCTAGCA
* * *
12461544 GACGTGAT-CTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
648 GACATGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
** *
12461608 GATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
712 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
12461673 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGATGGATACGGGGC
777 CTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
12461738 CAAT
842 CAAT
12461742 CTAGGGGCCA
Statistics
Matches: 2375, Mismatches: 174, Indels: 93
0.90 0.07 0.04
Matches are distributed among these distances:
865 20 0.01
866 289 0.12
867 8 0.00
868 2 0.00
869 7 0.00
870 48 0.02
871 659 0.28
872 52 0.02
873 81 0.03
874 251 0.11
875 154 0.06
876 36 0.02
879 2 0.00
890 188 0.08
891 84 0.04
892 433 0.18
893 3 0.00
894 2 0.00
895 1 0.00
896 1 0.00
897 3 0.00
900 3 0.00
901 6 0.00
902 19 0.01
903 23 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (873 bp):
CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCACGATGCTCCGGTGATGGTGCCCCGA
CGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGGAACCCTCAGTCTGG
TCCGATCTTAGACTACGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
CGGCCGAGTCCCCCTCCACGTGCTGCCAATCCTACTACCGTAACCCTCGGTCTGGTCCAATCTTA
GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCGGG
CACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGGTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC
TTTTTACGGTTTAGGGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCCCCAAACCTAGCAGAC
ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGTCCAAGTGCACCCCCCGACCCT
Found at i:12461065 original size:26 final size:26
Alignment explanation
Indices: 12461035--12461087 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12461025 CTGGTCCGTT
* *
12461035 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12461061 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12461087 C
1 C
12461088 CAAGTCAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12461453 original size:892 final size:902
Alignment explanation
Indices: 12460049--12461977 Score: 2702
Period size: 892 Copynumber: 2.1 Consensus size: 902
12460039 TTCTCCGACG
** * * * *
12460049 ATGCTCCGGTGATGGTGCCTCGACGAAGAAAAATGTAGCACCAGCGCATTCCCGAGCCCAGCATG
1 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * ** *
12460114 TGCTACCGGAACCCTCGGTCTGGTCTGATCTTAGACTACGAATGAACTCCGTATGCTTAGACTGG
66 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
* * *
12460179 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGG
131 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGG
* *
12460244 GGGGGATGCGCAAGCCGGGGATCAGCCGAGTCCCCCTCCATGTGCTGCCGATCCTACTACCGTAA
196 GGGGGATGCGCAAGACGGGGATCAGCCGAGTCCCCCTCCATGTGCTGCCAATCCTACTACCGTAA
* * * * * *
12460309 CCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCATCCGACGAAACG
261 CCATCAGTCTGGTCCAATCTTAGACTAGGAAAGAACTCAGTATGCCTAAACCAACCGACGAAACG
* ** * *
12460374 AGTGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
326 AGTAGGCGGGCAAGAGGGCGGGCACTACGCAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
12460439 ATAAGGTGGTAGGTGGGGTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
391 ATAAGGTGGTAGGTGGGGTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
12460504 TGTAAATTCATACAATGGTCCCTTAAGTCTACACGTGAAGTTTCATGGGAAGACGACTCGTTTTC
456 TGTAAATTCATACAATGGTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * *
12460569 TATTTTTCACGATTTTTAAAACTTTTTACGGTTAGGGATTTTTTTGAAATTTTTTTGGAA-GCAG
521 TATTTTTCACAATTTTTAAAACTTTTTACGGTTAGAGA-TTTTTT-AAAATTTTTTCGAATGCAG
* *
12460633 TTTTGGCCCGAAACCTAGCAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
584 TTTTGGCCCCAAACCTAGCAGACATGAT-CTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGC
**
12460698 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
648 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTCAGACACTTT
*
12460763 AATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGG
713 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGG
12460828 TTTGATGAGGGATA-G-GGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGC
778 TTTGATGAGGGATAGGAGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGC
* * * *
12460891 ACACACCCCA-CC-GG-CCCCCCGATCGTCGGAACCCCAAT-GCC-GTC-GG-TC-AGGT
843 ACACACACCACCCTGGCCCCCCCGATAGCCAGAACCCCAATGGCCGGTCAGGTTCTAGGT
* *
12460943 -T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATC
1 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
** * * *
12461006 TGCTGTTGCAACCCTCAGTCTGGTCCGTTCTTAGTCTGGGAATGAACTCCGTATGCTTAGACTAG
66 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
*
12461071 GAATGAACTCCGTATGCC-AAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGG
131 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGG
* * * * * * *
12461135 GGTGGGATGCGTAAGACGGGGATCGGTCGGGTCCCCCTCTATGTGCTGCCAATCTTGCTACCGTA
196 GG-GGGATGCGCAAGACGGGGATCAGCCGAGTCCCCCTCCATGTGCTGCCAATCCTACTACCGTA
* * * *
12461200 ACCATCAGTTTGGTCCAATCTTAGACTGGGAAAGAACTCAGTATGCCTAAACCAACCGATGAAAT
260 ACCATCAGTCTGGTCCAATCTTAGACTAGGAAAGAACTCAGTATGCCTAAACCAACCGACGAAAC
* *
12461265 GAGTAGGCGGGCAAGAGGGCGGGCACTATGCTAG-CTAGAGAGACGGGATGCGCAAGCCGTGGAT
325 GAGTAGGCGGGCAAGAGGGCGGGCACTACGC-AGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
12461329 CGAT-AGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTCTG
389 CGATAAG-GTGGTAGGTGGGGTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * *
12461393 GCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTT
453 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
12461458 TTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGAATGGA
518 TTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTAGAGATTTTTTAAAATTTTTTCGAATGCA
* * * *
12461523 GTTTTGGCCCCAAACTTGGTAGACGTGATCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGC
583 GTTTTGGCCCCAAACCTAGCAGACATGATCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGC
* *
12461588 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTTAGACACTTT
648 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTCAGACACTTT
*
12461653 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
713 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGG
* * *
12461718 TTTGATGATGGATACGGGGCCAATCTAGGGGCCAATCTAAGGGCCAAGTACCAGCACCCATCGCA
778 TTTGATGAGGGATA---GG-------AGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCA
* *
12461783 TATCATGTGCGCACACACCACCCTGGCCCCCCCGATAGCCAGAACCCCAATGGCGCCGGTCAGGT
833 CATCATGTGCACACACACCACCCTGGCCCCCCCGATAGCCAGAACCCCAAT-G-GCCGGTCAGGT
*
12461848 TCTTCGGT
896 TC-TAGGT
* * * *
12461856 GATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGTACCAACACATGCCCAAGCCCAGCAT
1 -ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
12461921 GTTCTGCCGCAACCGTCGGTCTGGTCCGATCTTAGACTGGGAATGAAATCCGTATGC
65 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
12461978 CTAAGTCAAC
Statistics
Matches: 902, Mismatches: 103, Indels: 38
0.86 0.10 0.04
Matches are distributed among these distances:
890 184 0.20
891 78 0.09
892 441 0.49
893 2 0.00
894 1 0.00
902 53 0.06
903 2 0.00
904 2 0.00
905 21 0.02
908 3 0.00
909 3 0.00
910 2 0.00
911 2 0.00
913 3 0.00
915 1 0.00
916 104 0.12
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (902 bp):
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGG
GGGGGATGCGCAAGACGGGGATCAGCCGAGTCCCCCTCCATGTGCTGCCAATCCTACTACCGTAA
CCATCAGTCTGGTCCAATCTTAGACTAGGAAAGAACTCAGTATGCCTAAACCAACCGACGAAACG
AGTAGGCGGGCAAGAGGGCGGGCACTACGCAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAAGGTGGTAGGTGGGGTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACAATTTTTAAAACTTTTTACGGTTAGAGATTTTTTAAAATTTTTTCGAATGCAGTT
TTGGCCCCAAACCTAGCAGACATGATCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTT
GATGAGGGATAGGAGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCACA
CACACCACCCTGGCCCCCCCGATAGCCAGAACCCCAATGGCCGGTCAGGTTCTAGGT
Found at i:12461750 original size:12 final size:12
Alignment explanation
Indices: 12461733--12461764 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
12461723 TGATGGATAC
12461733 GGGGCCAATCTA
1 GGGGCCAATCTA
12461745 GGGGCCAATCTA
1 GGGGCCAATCTA
*
12461757 AGGGCCAA
1 GGGGCCAA
12461765 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.28, C:0.25, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATCTA
Found at i:12462617 original size:26 final size:26
Alignment explanation
Indices: 12462581--12462639 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
12462571 CTCGGTCCAG
12462581 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
12462605 TCCGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
12462631 TCCGTATGC
1 TCCGTATGC
12462640 CTAAGTCAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 26 0.79
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:12463525 original size:25 final size:24
Alignment explanation
Indices: 12463484--12463536 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
12463474 CTCGGTCTGG
* *
12463484 TCCGATCTTAGATTGGGAATGAAC
1 TCCGATCTTAAACTGGGAATGAAC
12463508 TCCGATTCTTAAACTGGGAATGAAC
1 TCCGA-TCTTAAACTGGGAATGAAC
12463533 TCCG
1 TCCG
12463537 TATGCCTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
TCCGATCTTAAACTGGGAATGAAC
Found at i:12464428 original size:26 final size:26
Alignment explanation
Indices: 12464377--12464429 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12464367 CTGGTCCAAT
* * *
12464377 CTTAGACTTGGATTGAACTTCGTATG
1 CTTAGACTTGGAATGAACTCCCTATG
12464403 CTTAGA-TTGGGAATGAACTCCCTATG
1 CTTAGACTT-GGAATGAACTCCCTATG
12464429 C
1 C
12464430 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCCTATG
Found at i:12464892 original size:893 final size:889
Alignment explanation
Indices: 12462523--12467608 Score: 6379
Period size: 876 Copynumber: 5.7 Consensus size: 889
12462513 CAGCGTAGAG
* * * ** *
12462523 AAATGTGGCACCAACACATGCTCGAGCCCAGCATGTGCTGTAGTAACCCTCGGTCCAGTCCGATG
1 AAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG--CTAACCCTCGGTCTGGTCCGATC
*
12462588 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
64 TTAGA-TTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
12462653 CGAAACGAGCGTACGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACCA
128 CGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGA
* * * * * * * *
12462717 GGTCCCCCTCTGCGTGCTGCCAATCTTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGG
193 -GTCCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGG
* * * *
12462782 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGAGCGGGCAGGCACTAC
257 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTAC
*
12462847 GCCGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGGTAGGTGGG-TTGGGCACAT
322 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
12462910 CTTTATATTTCTATGTGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
387 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* ** * *
12462975 CTTCAAGTGAAGTTTCATGGTGAGACGACTCATTTTCTATTTTTCACTATTTTTGAAACTTTTTA
452 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* ** * *
12463040 CGGTTTGGGATTTTTTAAAATTTTTTCAGAAA-GAGTTTTGGAACCAAACTTGGTAGACGTGACC
517 CGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATC
* * * *
12463104 CTTTTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
581 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAG
* *
12463169 ACCATTTGAAAAAATTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
646 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
12463234 CTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAG
711 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
12463299 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCACCCCTGCCCCCCCGATCACCGG
776 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCC-GGCCCCCCGATCGCCGG
* * *
12463364 AACCCCAATGCCG-CCAGTCAGGTTCTCCGACGATGCTCCGGCGATGATTCTCTGGCGAAGAA
839 AACCCCAATGCCGTCGA-TCAGGTTCTCCGACGA---T---G-G-TG--CCTC-GACGAAGAA
* * *
12463426 AAATGTGGCACCAAAACATGCCCGAGCCCAGAATGTGCTGCCGTAACCCTCGGTCTGGTCCGATC
1 AAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG-C-TAACCCTCGGTCTGGTCCGATC
* *
12463491 TTAGATTGGGAATGAACTCCG-ATTCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
64 TTAGATT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * *
12463555 CGAAACGAGCGTGCGGGTGCTCAGCCGGCCCGAGGGG-GGGATGCGCAAGCCAGGGATCGGTCGG
128 CGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGA
* * * ** * * *
12463619 GTCCCCCTCTGCATGCTGCCGATCGTGCTGCCACAACCCTC-GATCTGGTCTGATCATATATTGG
193 GTCCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCCAATCTTAGACTGG
* * * * *
12463683 GAATAAACTCTGTATGCCTAAGCCAACCGATG----GAACGAGCGGGCGGGCGGGCAGGCACTAC
257 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTAC
*
12463744 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACAT
322 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
12463809 CTTCATATTTTTGTGTGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGC
387 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * **
12463874 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACAATTTTCAAAACTTTTTA
452 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
** * * * * * *
12463939 CGGTTCAAGAATTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTAGAAGACGTGATCA
517 CGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCC
*
12464004 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGA
582 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGA
* *
12464069 CCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATC
647 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
12464134 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAACATAAGG
712 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
12464199 GCCAAGTACCAGCACCCATCGCACATCATGTCCGGACACCCCCCCGGCCCCCCCGATCGTCGGAA
777 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAA
*
12464264 CCCCAATGCCGTCGATTAGGTTCTCCGACGATGGTGCCTCGACGAAGAA
841 CCCCAATGCCGTCGATCAGGTTCTCCGACGATGGTGCCTCGACGAAGAA
* *
12464313 TAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTATAACCCTCGGTCTGGTCCAATC
1 AAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGC--TAACCCTCGGTCTGGTCCGATC
* * * *
12464378 TTAGACTTGGATTGAACTTCGTATGCTTAGATTGGGAATGAACTCCCTATGCCTAAGTCAACCCA
64 TTAGA-TTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
12464443 CGAAACGAGCGTGCGGGTACTCAGCCGGCCAGAGGGGCGGGATACGCAAGCCAGGGATCGGTTGG
128 CGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGA
* * * * **
12464508 GTCCCCCTCTGCATGCTACCGATCCTACTGCCGCAAACCACAGTCTGGTCCAATCTTAGGCAAGG
193 GTCCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGG
* * * *
12464573 AATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGCGGGTGGGCGGCCGGGCACAACG
258 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACG
** *
12464638 CCGGCCAGAGAGACGGGATGCGCAAGCTATGGATCGATAGGGTCGTAGGTGGGTTTAGGCACATC
323 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
12464703 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
388 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
12464768 TTCGCGTGAAGTTTCATGGCAAGACGACAT-GTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
453 TTCACGTGAAGTTTCATGGCAAGACGAC-TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * *
12464832 CGATTTGGGATTTTTTAAAATTTTTACGAAAGGATTTTTGGCCCCAAACTTAGTAGACGTGATCC
517 CGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCC
* *
12464897 TTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAGAACTCGAAGTGTACAAGATTTT-ATG
582 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGA-G
* * * *
12464961 ACCCTTTGAAAAAAGTATCCCCATTTTAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
646 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
12465026 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
711 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
12465091 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCGCCCCGATGGCCGGAA
776 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAA
* *
12465156 CCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTTCGACGATGGTGCCCCGACGAAGAA
841 CCCCAATGCCGTCGATCAGG---TT---C--T-C--CGACGATGGTGCCTCGACGAAGAA
* * ** *
12465216 AAATACGGCACCAACACATGCCCGAGCCCAG--TATG-TGCT-A--C-C-G-C--AACC--T-TC
1 AAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTAACCCTCGGTCTGGTCCGATCTT
** * * * *
12465267 AG--T---CCG-A-TCC-AAT-CTTAGAATGGGAATGAACTCCGTATGACTAATTCAACCCACGA
66 AGATTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * *
12465323 AAC-AGGCGTGCGGGTGCTCAACCGACCAGAGGGGCGAGATGCGTAAGCCAAGGATTGGTCGAGT
131 AACGA-GCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGAGT
* * * * *
12465387 ACCCCTCTG--TGTCTACCGATCCTGCTACCGTAACCCTCAAT-TCGGTCCAATCTTAGACTGAG
195 CCCCCTCTGCATG-CTACCGATCCTGCTGCCGCAACCCTCAGTCT-GGTCCAATCTTAGACTGGG
* ** * * ** * * *
12465449 AATGAACTCCATATGCCTAATACAACCAACAAAACGAGTGGGTGGGCAGGCGGGTGGGCACTACG
258 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACG
* * *
12465514 TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATC
323 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
12465579 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
388 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
** * * * *
12465644 TTCACGTGAAGTTTCATAACAAGACGAATCGTTTTATATTTTTCACGATTTTTGAAA-ATTTTGC
453 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * *
12465708 GGTTCGGTATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATTCT
518 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCT
*
12465773 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
583 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGAC
*
12465838 CATTTGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
648 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
12465903 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
713 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
12465968 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACGCCCCGATCGCCGGAACC
778 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACC
* * *
12466033 CCAATGCCGCCGGTCAGGTTCTTCGGTGATGCTTCGACGATGGTGCCCCGACGAAGAA
843 CCAATGCCGTCGATCAGG---TTC-----T-C--CGACGATGGTGCCTCGACGAAGAA
* * ** *
12466091 AAATACGGCACCAACACATGCCCGAGCCCAG--TATG-TGCT-A--C-C-G--T-AACC---CTC
1 AAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTAACCCTCGGTCTGGTCCGATCTT
* * * *
12466142 AG-TT----CG-A-TCC-AAT-CTTAGAATGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
66 AGATTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * *
12466198 AACAAGCGTGCGAGTGCTCAACCGACCAGAGGGGCGAGATGCGTAAGCC-GAGGATTGGTCGAGT
131 AACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGGTCGAGT
* ** * * **
12466262 ACCCCTCTGTGTGCTACCGATCCTGCTACCGTAACCCTCAGT-TCGGTCTGATCTTAGACTGGGA
195 CCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCAGTCT-GGTCCAATCTTAGACTGGGA
* * * * *
12466326 ATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCAGGCGGGCGGGCACTACGT
259 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGC
* * * *
12466391 CGGCCAGAGAGGCAGGATGCGCAAGCCGTAGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCT
324 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
12466456 TCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCT
389 TCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
12466521 TCACGTGAAGTTTCACGGCAAGACGACTAGTTTTCTATGTTTCACGATTTTTGAAACTTTTTGCG
454 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * *
12466586 GTTCGAGATTTTTTAAAATTTTTACGAAAGGATTTTTGGCCCCAAACTTAGTAGACGTGATCCTT
519 GTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTT
* *
12466651 GTATTTTTGTTGGCATGCACAAAATAATTCAGCCAAAAACTCGAAGTGTACAAGATTTT-ATGAC
584 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGA-GAC
* * * * * *
12466715 CCTTTGAAAAAATTATCCCCATTTCAGATACTTTAATGGCTACTGGCAGGAAACCTATAAAATCT
648 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
12466780 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
713 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
12466845 CCAAGTACCAGCACCCAACAG-ACATCATGTGCGCACACCCACCCCGGCCCCCCGATCGTCGGAA
778 CCAAGTACCAGCACCCATC-GCACATCATGTGCGCACACCC-CCCCGGCCCCCCGATCGCCGGAA
* * *
12466909 CCCTAATGCCG-CCAGTCAGGTTCTCCGACGATGCTTCAGCGATGGTGCCTGGACGAAGAA
841 CCCCAATGCCGTCGA-TCAGGTTCT-C--C---G----A-CGATGGTGCCTCGACGAAGAA
* * * * * * *
12466969 AAATGCTGCACCAACTCATACCCAAGCCTAGCATGTGCTACCGC-AAGCCTCGGTCTGATCCGAT
1 AAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT---GCTAACCCTCGGTCTGGTCCGAT
* * *
12467033 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCG
63 CTTAGA-TTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
** ** * * * *
12467098 ACGAAACGAATGTGCAAGTGCTCAGCCGGCCCGAGGGGCGGGATGCACAAGCCGGGGATCGGTCG
127 ACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCG
* * ** *
12467163 AGTCTCCCT-T-CACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCAGTCCAATCTTAGATT
192 AGTCCCCCTCTGCA--TGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACT
* * * * *
12467226 GGGAACGAACTCTGTATGCCTAAGCCAACCGATGAAACG-A---GCAGGCGGGCAGGCGGGCACT
255 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACT
* * *
12467287 ACGTCGACCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
320 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
12467352 ATCCTCATATTTCTACT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
385 ATCTTCATATTTCTA-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * **
12467416 AGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTTTATTTTTCACGATTTTCAAAACTTT
449 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * *
12467481 TTAAGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGCAGACGTGA
514 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGA
*
12467546 TCCTTTTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
579 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
12467609 ATGACCCCAG
Statistics
Matches: 3716, Mismatches: 376, Indels: 186
0.87 0.09 0.04
Matches are distributed among these distances:
870 3 0.00
872 1 0.00
873 1 0.00
875 537 0.14
876 548 0.15
877 387 0.10
878 82 0.02
879 2 0.00
880 4 0.00
881 2 0.00
884 4 0.00
886 2 0.00
887 85 0.02
888 81 0.02
889 102 0.03
890 6 0.00
891 4 0.00
892 35 0.01
893 488 0.13
894 6 0.00
895 4 0.00
896 1 0.00
897 54 0.01
898 76 0.02
899 432 0.12
900 280 0.08
901 109 0.03
902 81 0.02
903 129 0.03
904 169 0.05
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (889 bp):
AAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTAACCCTCGGTCTGGTCCGATCTT
AGATTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGAGTC
CCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCG
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
TCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCA
ATGCCGTCGATCAGGTTCTCCGACGATGGTGCCTCGACGAAGAA
Found at i:12467062 original size:26 final size:26
Alignment explanation
Indices: 12467033--12467085 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12467023 CTGATCCGAT
*
12467033 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12467059 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12467085 C
1 C
12467086 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12467789 original size:26 final size:26
Alignment explanation
Indices: 12467760--12467812 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12467750 CCAGTCTGAT
*
12467760 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12467786 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12467812 C
1 C
12467813 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12468287 original size:729 final size:728
Alignment explanation
Indices: 12466885--12468344 Score: 2004
Period size: 729 Copynumber: 2.0 Consensus size: 728
12466875 GCGCACACCC
* * * *
12466885 ACCCCGGCCCCCCGATCGTCGGAACCCTAATGCCGCCAGTCAGGTTCTCCGACGATGCTTCAGCG
1 ACCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTTCTCCGACGATGCTCCAGCG
** * ** * * *
12466950 ATGGTGCCTGGACGAAGAAAAATGCTGCACCAACTCATACCCAAGCCTAGCATGTGCTACCGCAA
66 ATGGTGCCCAGACGAAGAAAAATACTGCACCAACAAATACCCAAGCCCAGCATGTACTACCACAA
* * *
12467015 GCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
131 CCCTCGATCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * *
12467080 ATATGCCTAAGTCAACCGACGAAACGAATGTGCAAGTGCTCAGCCGGCCCGAGGGGCGGGATGCA
196 ATATGCCTAAGTCAACCCACGAAACGAACGTGCAAGTGCGCAGCCGGCCCAAAGGGCGGGATGCA
* * *
12467145 CAAGCCGGGGATCGGTCGAGTCTCCCTTCACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCC
261 CAAGCCGGGGATCGGCCGAGTCTCCCTTCACATGCTACCGATCCTGCTGCCGCAACCCTCGATCC
* ** * **
12467210 AGTCCAATCTTAGATTGGGAACGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGG
326 AGTCCAATCTTAGACTGGGAACGAACTCCATATGCCTAAGCCAACCAACAAAACGAGCAGGCGGG
* * * * *
12467275 CAGGCGGGCACTACGTCGACCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
391 CAGGCGGGCACTACGCCGACCAGAGAGACGGGATATACAAGCCGTGGATCGATAGGGCGATAGGT
12467340 GGGTTTAGGCACATCCTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
456 GGGTTTAGGCACATCCTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
12467405 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTTTATTTTTCACGATT
521 ATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACCCATTTTCTATTTTTCACGATT
12467470 TTCAAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTT
586 TTCAAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTT
** *
12467535 GGCAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGT
651 GGCAGACGTGATCCTCATATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGT
12467599 ACAAGATTTTATG
716 ACAAGATTTTATG
* * *
12467612 ACCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCC-GATCAAGTTCTCTGACGATGCTCCGGT
1 ACCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCAG-TCAAGTTCTCCGACGATGCTCCAGC
* * * *
12467676 GATGGTGCCCAGACGAAGAAAAATAC-GACACCAACAAATGCCCGAGCCCAGCATGTACTGCCAT
65 GATGGTGCCCAGACGAAGAAAAATACTG-CACCAACAAATACCCAAGCCCAGCATGTACTACCAC
* *
12467740 AACCCTCGATCCAG-TCTGATCTTAGACTGGGAATGATCTCCGTATGCTTAGACTGGGAATGAAC
129 AACCCTCGAT-CAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * **
12467804 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCGCAGCCGG-CCAAAGGGCGGGAT
193 TCCATATGCCTAAGTCAACCCACGAAACGAACGTGCAAGTGCGCAGCCGGCCCAAAGGGCGGGAT
* * * * ** *
12467868 GCGCAAGCCGGGGAT-GGCCGGGTC-CCCTTCTACATGCTGCCGATCTTGCTGTGGCAACCCTCT
258 GCACAAGCCGGGGATCGGCCGAGTCTCCCTTC-ACATGCTACCGATCCTGCTGCCGCAACCCTCG
* * *
12467931 ATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACGAGC-GT
322 ATCCAGTCCAATCTTAGACTGGGAACGAACTCCATATGCCTAAGCCAACCAACAAAACGAGCAG-
* *
12467995 GCGGGCGGTTGGGCGGGCACTACGCC-AGCCGGAGAGACGGGATATACAAGCCGTGGATCGATAG
386 GCGGGC----AGGCGGGCACTACGCCGA-CCAGAGAGACGGGATATACAAGCCGTGGATCGATAG
* * ** *
12468059 GGCGATAGGTGTGTTTAGGCACATCTTCATATTT-TTGTGTTCCAATGCCATTTTTATGGCTTGT
446 GGCGATAGGTGGGTTTAGGCACATCCTCATATTTCTACT-TGCCAATGCCATTTTTATGGCTTGT
* *
12468123 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGATGACTCATTTTCTAT
510 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACCCATTTTCTAT
** *** * * *
12468188 TTTTCACGATTTTTGAAACTTTTTGTTGTTGGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTG
575 TTTTCACGATTTTCAAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTA
* *
12468253 GCCCCAAACTTGGTAGACGTGATCCTCATATTTTTGTTGGCATGCACAAAACATTTCAGCTAAAA
640 GCCCCAAACTTGGCAGACGTGATCCTCATATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAA
*
12468318 ACTCAAAGTGTACAAGATTTTGTG
705 ACTCAAAGTGTACAAGATTTTATG
12468342 ACC
1 ACC
12468345 ATTTGAAAAA
Statistics
Matches: 638, Mismatches: 83, Indels: 21
0.86 0.11 0.03
Matches are distributed among these distances:
724 7 0.01
725 91 0.14
726 28 0.04
727 204 0.32
728 5 0.01
729 266 0.42
730 37 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (728 bp):
ACCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTTCTCCGACGATGCTCCAGCG
ATGGTGCCCAGACGAAGAAAAATACTGCACCAACAAATACCCAAGCCCAGCATGTACTACCACAA
CCCTCGATCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
ATATGCCTAAGTCAACCCACGAAACGAACGTGCAAGTGCGCAGCCGGCCCAAAGGGCGGGATGCA
CAAGCCGGGGATCGGCCGAGTCTCCCTTCACATGCTACCGATCCTGCTGCCGCAACCCTCGATCC
AGTCCAATCTTAGACTGGGAACGAACTCCATATGCCTAAGCCAACCAACAAAACGAGCAGGCGGG
CAGGCGGGCACTACGCCGACCAGAGAGACGGGATATACAAGCCGTGGATCGATAGGGCGATAGGT
GGGTTTAGGCACATCCTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACCCATTTTCTATTTTTCACGATT
TTCAAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTT
GGCAGACGTGATCCTCATATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGT
ACAAGATTTTATG
Found at i:12468698 original size:26 final size:26
Alignment explanation
Indices: 12468662--12468714 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12468652 CCGGTCCGAT
*
12468662 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
12468688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
12468714 C
1 C
12468715 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:12469351 original size:885 final size:892
Alignment explanation
Indices: 12467613--12469572 Score: 2737
Period size: 885 Copynumber: 2.2 Consensus size: 892
12467603 GATTTTATGA
* * * * * *
12467613 CCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAAGTTCTCTGACGATGCTCCGGTGA
1 CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGA
* * * **
12467678 TGGTGCCCAGACGAAGAAAAATACGACACCAACAAATGCCCGAGCCCAGCATGTACTGCCATAAC
66 TGGTGCCC-GGCGAAGAAAAATACG-CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * *
12467743 CCTCGATCCAGTCTGATCTTAGACTGGGAATGATCTCCGTATGCTTAGACTGGGAATGAACTCCG
129 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* *
12467808 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCGCAGCCGGCCAAAGGGCGGGATGCGCA
194 TATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCGCAGCCGGCCAAAGGGCGAGATGCGCA
* *
12467873 AGCCGGGGATGGCCGGGTCCCCTTCTACATGCTGCCGATCTTGCTGTGGCAACCCTCTATCCGGT
259 AGCCGAGGATGGCCGGGTCCCC-TC-ACATGCTGCCG---TTGC-GTGGCAACCCTCGATCCGGT
* * * * *
12467938 CCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACGAGCGTGCGGGCGG
318 CCGATCGTAGACTAGGAATGAACTCCATATGACTAAGCCAACCAACAAAACAAGCGTGCGGGCAG
* * *
12468003 TTGGGCGGGCACTACGCCAGCCGGAGAGACGGGATATACAAGCCGTGGATCGATAGGGCGATAGG
383 TTGGGCGGGCACTACGCCAGCCAGAGAGACGGGATACACAAGCCGTGGATCGATAGGACGATAGG
** * ** * *
12468068 TGTGTTTAGGCACATCTTCATATTTTTGTGTTCCAATGCCATTTTTATGGCTTGTAAATTCATAC
448 TCAGTTTAGGCACATCTTCATATTTCTGTGAGCCAATGCCATTTCTATGGCTTGTAAAGTCATAC
*
12468133 AATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGATGACTCATTTTCTATTTTTCACGAT
513 AATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
*** ** * * *
12468198 TTTTGAAACTTTTTGTTGTTGGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
578 TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGCTTTGGCCCCAAACT
* * * * *
12468263 TGGTAGACGTGATCCTCATATTTTTGTTGGCATGCACAAAACATTTCAGCTAAAAACTCAAAGTG
643 TGGTAGACGTGATCCTCATATTTTTGTTGGCAGGAACAAAAAAATTCACCTAAAAACTCAAAGTG
* *
12468328 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAG
708 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAG
* *
12468393 CAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAG
773 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTCATGAGGGATAG
*
12468458 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCATACCC
838 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGC-CACACCC
* **
12468514 CCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACG
1 CCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTG
* * * *
12468579 ATGGTGCCTCGGCGAAGAAAATTGCAGCACCAACACATGCCCGAACCCAGCATGTGTTGCCGCAA
65 ATGGTGCC-CGGCGAAGAAAAATAC-GCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * *
12468644 CCCTTGGTCCGGTCCGATCTTAAACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
128 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * *
12468709 GTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGTGCTCAGTCGGCCAGAAGGGCGAGATGCG
193 GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCGCAGCCGGCCA-AAGGGCGAGATGCG
* *
12468774 CAAGTCGAGGATCGGCCGGGT-CCC-C-C-T-CTG-CG-TGC-T-GCAACCCTCGGTCCGGTCCG
257 CAAGCCGAGGAT-GGCCGGGTCCCCTCACATGCTGCCGTTGCGTGGCAACCCTCGATCCGGTCCG
* * * **
12468830 ATCGTAGACTAGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACAAGCG-G-TTG-AG-TG
321 ATCGTAGACTAGGAATGAACTCCATATGACTAAGCCAACCAACAAAACAAGCGTGCGGGCAGTTG
* * * * *
12468891 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGATGGTAGGTCA
386 GGCGGGCACTACGCCAGCCAGAGAGACGGGATACACAAGCCGTGGATCGATAGGACGATAGGTCA
12468956 GTTTAGGCACATCTTCATATTTCTGTGAGCCAATGCCATTTCTATGGCTTGTAAAGTCATACAAT
451 GTTTAGGCACATCTTCATATTTCTGTGAGCCAATGCCATTTCTATGGCTTGTAAAGTCATACAAT
* *
12469021 GGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAGACGACT-AGTTTTCTATTTTTCACGATTT
516 GGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCA-TTTTCTATTTTTCACGATTT
12469085 TTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGCTTTGGCCCCAAACTTG
580 TTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGCTTTGGCCCCAAACTTG
* ** * * *
12469150 GTGGACGTGATCCTTGTATTTTTTTTGGCAGGAATAAAAAAATTCAACCT-AAAACTCGAAGTGT
645 GTAGACGTGATCCTCATATTTTTGTTGGCAGGAACAAAAAAATTC-ACCTAAAAACTCAAAGTGT
12469214 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGC
709 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGC
* *
12469279 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTTGAGGTTTGATGAGGGATAGG
774 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTCATGAGGGATAGG
*
12469344 GGGCCAATATAAGGGCCCAGTACCAGCACCCATTGCACATCATGTGCCACACCC
839 GGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCCACACCC
* * * * *
12469398 CCCCGACCCCCCCGATCG-CTAGAACCCTAGTGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGT
1 CCCCG-GCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGT
* * * *
12469462 GATGGTGCCCCGGCAAAGAAAAATACGGCACCAACACATGCCTGAGCCCAACATGTGCTGCTGCA
64 GATGGTG-CCCGGCGAAGAAAAATAC-GCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
12469527 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
127 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
12469573 CTAAGTCAAC
Statistics
Matches: 938, Mismatches: 111, Indels: 37
0.86 0.10 0.03
Matches are distributed among these distances:
883 1 0.00
884 148 0.16
885 460 0.49
886 4 0.00
887 1 0.00
888 1 0.00
889 64 0.07
890 1 0.00
892 3 0.00
896 2 0.00
897 3 0.00
898 1 0.00
899 1 0.00
901 12 0.01
902 200 0.21
903 28 0.03
904 8 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGA
TGGTGCCCGGCGAAGAAAAATACGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCGCAGCCGGCCAAAGGGCGAGATGCGCAAG
CCGAGGATGGCCGGGTCCCCTCACATGCTGCCGTTGCGTGGCAACCCTCGATCCGGTCCGATCGT
AGACTAGGAATGAACTCCATATGACTAAGCCAACCAACAAAACAAGCGTGCGGGCAGTTGGGCGG
GCACTACGCCAGCCAGAGAGACGGGATACACAAGCCGTGGATCGATAGGACGATAGGTCAGTTTA
GGCACATCTTCATATTTCTGTGAGCCAATGCCATTTCTATGGCTTGTAAAGTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGCTTTGGCCCCAAACTTGGTAGAC
GTGATCCTCATATTTTTGTTGGCAGGAACAAAAAAATTCACCTAAAAACTCAAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCCACACCC
Found at i:12470403 original size:26 final size:26
Alignment explanation
Indices: 12470367--12470419 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12470357 CCGGTCCGAT
*
12470367 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
12470393 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
12470419 C
1 C
12470420 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:12476027 original size:26 final size:26
Alignment explanation
Indices: 12475975--12476027 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12475965 GTTGACTTAT
* *
12475975 GCATACGGAGTTCATTCCCATTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12476001 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12476027 G
1 G
12476028 ATAGCACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12477361 original size:26 final size:26
Alignment explanation
Indices: 12477331--12477383 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12477321 GTTGACTTAG
*
12477331 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
12477357 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
12477383 G
1 G
12477384 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:12479161 original size:25 final size:26
Alignment explanation
Indices: 12479112--12479163 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
12479102 GTTGACTTAG
*
12479112 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12479138 GCATACGGTGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12479163 G
1 G
12479164 ATCAGATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12480932 original size:26 final size:26
Alignment explanation
Indices: 12480896--12480948 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12480886 GATGACTTAG
12480896 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12480922 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12480948 G
1 G
12480949 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12482733 original size:26 final size:26
Alignment explanation
Indices: 12482697--12482749 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12482687 GTTGACTTAG
12482697 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12482723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12482749 G
1 G
12482750 ATCATACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12483891 original size:872 final size:872
Alignment explanation
Indices: 12476465--12491342 Score: 16287
Period size: 872 Copynumber: 16.9 Consensus size: 872
12476455 TTTTAAAAAA
* * * * **
12476465 TCCCAGTCTAGGATCCGA-CAGGACCGAGGGTTGTGGCAGCACATGCTAGGCTTAGGCATGTGTT
1 TCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTT
* ** ** * * * *
12476529 GGTGCCACATTTTTCTTCGTCGGGGCACCATCATCATAGCATCG-CGAAGAGCCTGACCTGCGGC
65 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGC
* * * *
12476593 ATTGGGGTTCTGACGATCGAGTGGGCCGGGGAAAGGGGTGTGCACACATGATGTGCGATGGGAG-
130 ATTGGGGTTCCGACGATCG-GGGGGCC--GG---GGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
12476657 TCGGTACTTGGCCCTTATTTTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTA
189 T-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
12476722 AAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAATTGCCTGAAATGGGGACACT
253 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
12476787 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
318 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
12476852 ACAAAAATACAAGGATCCCGTCTACCAAATTTGGGGCCAAAA-TAGCTTTCGAAAAAATTTAAAA
383 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTTCGAAAAAATTTTAAA
* *
12476916 AAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
447 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
12476981 GCTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
512 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
12477046 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
577 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * * ***
12477111 CTTTCTGGTCGGTGTAGTGCCCGCCCACTCGCCTGCTCGTTCGTTTCGTCGGTTCAATTAGGCAT
642 CTCTCTGGCCGGCGTAGTGCCCG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * **
12477176 ATC-AAGTTCATTCCCAGCCTAAGATCAG-CTCAGATCGAGGGTTGCGGTAGTAGGATCAACAGC
703 A-CGGAGTTCATTCCCAGTCTAAGATCAGAC-CAGACCGAGGGTTGTGGCAGCAGGATCGGCAGC
* * ** * * * *
12477239 ATGCAGAGGGGGACTCGGTCGATCCCTGGCTTGTGCATCTCGCCCCTCTGGCTGGCTGAGCACCC
766 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * * *
12477304 GCATGCTTGTTTCATGAGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAAGCATACAGAGTT
831 GCACGCTCGTTTCGTG-G--G--TT--G-------A---C--T--TAG-----GCATACGGAGTT
12477369 CAT
870 CAT
* *
12477372 TCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGTT
1 TCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTT
* * * * ** * *
12477436 GGTGTCGTATTTTTTTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGATCGGCGGC
65 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGC
* * *
12477501 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGTGTGCACAGGATGTCCGATGGGTGCTGG
130 ATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * *
12477566 TACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACATCGGGAACTCACACACCCTTAAAGA
192 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
12477631 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTG
257 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
12477696 TCAAATGGTCACAAAATCTTGTACGCTTCAAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAA
322 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * *
12477761 AAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCATATCCAAAAAATTTTAAAAAATC
387 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
* *
12477826 CCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
452 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
12477891 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
517 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
12477956 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
582 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * * *
12478021 TGGACGGCATAGTGCCCGCCTGCCCGCTCGCTCGTTTCGTCAGTTGGCTTACGCATGCAGAGTTC
647 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** * * * * * *
12478086 ATTCCCAGTCTAAGATTGGACCGGACCAAAGGTTGTGGCAGCAGGATCGGTAGCATGCAGAGGGT
712 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * **
12478151 GACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCT-TGGCCTACTGAGCACCCGCACGCTTC-T
777 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC-TCGT
* *
12478214 TTCGTGGGTTGACTTAGACGTACGGAGTTCAT
841 TTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
12478246 TCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCACATGTTGGGCTCGGGCATGTGTTG
1 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * * * **
12478311 GTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCAT-GGAGAGCCTGACCTACGGCA
66 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGCA
* * *
12478375 TTGGGGTTCCGACGATCGAGCGGGCCGGGGAAAGGGGTGTGCGCACATTATGTGCGATGGGTGTT
131 TTGGGGTTCCGACGATCG-GGGGGCC--GG---GGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
12478440 GGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
190 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
12478505 GAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
255 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
12478570 TTTCAAACGGTCGA-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAA
320 TTTCAAATGGTC-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
12478634 AAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTGCGAAAAAATTTTAAAAA
384 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
* * * *
12478699 ATCCTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
449 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
12478764 TTCACATGAATGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
514 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
12478829 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCACATCCCGTCT
579 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * **
12478894 CTCTGGCCAGCGTAGTGCCCGGCCTTCCGGCCGACCGCTCATTTAATCGGTTGGCTTAGGCATAC
644 CTCTGGCCGGCGTAGTGCCC-G-C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * ** * * * * *
12478959 GGAGTTCATTCCTAGTCTAAGATCAAAGCAAATTGAGGGGTGTGGTAGCAAGATCGACAGCATGC
705 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGC
* * * ** * ** *
12479024 AGAGGGGGACTCGGCCGATCCTCGGCTTGCATATCCCGCCCCTCTAGCCAACTGAGCACTCGCAC
770 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
*
12479089 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
835 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
12479127 TCCCAGTCTAAGCATACGGTGTTCATCCCAGTCTAAGATCAGATTAGACTGAGGGTTACGGTAGT
1 TCCCAGTCTAAG-AT-C--AG---A---C---C--AGA-C--------C-GAGGGTTGCGGCAGC
** * * * *
12479192 ACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCTGGGCGCCATCGTCGGAGCA
41 ACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA
** * ** * * * * *
12479257 TCACCGGAGAACCTGACCGATGGCATTGGGGTTCCGGCAATTGGGGGGCCCGGGGGTGTACGCAC
106 TCGTCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC
* *
12479322 ATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGA
171 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
12479387 GAACTCACA-CCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
236 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
12479451 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGA
301 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGA
*
12479515 ATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
365 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * * * *
12479580 TTTG-AAAAATTTTAAAAAATCTCGAATCGCAAAAAGATTCGAAAATCATGAAAAATAGAAAATG
430 TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
12479644 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATA
495 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* ** * * *
12479709 AAAATGGAATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCATATTGATCCA
560 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
12479774 CGACTTACGCATCTCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCG
625 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG--C--TCGTTTCG
* *
12479839 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACC-GAACTGAGGGTTGTGG
686 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGTGG
* * * *
12479903 CAGCAGGATCAGCAGCACACAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCT
750 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* *
12479968 GGCCAGCTGAGCACCCG-A--------T--TGGGTTGACTTAGGCATACAGAGTTCAT
815 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
12480015 TCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTGTAAGATCGAGGGTTGCGGCAGCAAATGCTGG
1 TCCCAGTCTAAG-AT-C--AG---A---CC------AGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
12480080 GCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAATCGCCGGAG
50 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * *
12480145 AACCTAATCGACGGCATTAGGGTTCTGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTA
115 AACCTAACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
12480210 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCAAGAACTCAC
179 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12480275 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAAT
244 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12480340 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
309 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
12480405 TGCATGCCAACAAAAATATAAGGATCATGTCTACCAGGTTTGGGGCC-AAAGTGCCTTCCAAAAA
374 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTTCGAAAA
** **
12480469 AATTTTAAAAAATCCCGAACCACAAAATCTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
438 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12480534 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
503 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
12480599 ATTGGTGTGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGC
568 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * *
12480664 ACATCCCATCTCTCTGGCCGATGTAGTGCCCGCCCGACCACCCACCCACCCGTTCGTTTCGTCGG
633 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--------CCCGCCCGCTCGTTTCGTCGG
* * * * * *
12480729 TTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGAAT-GGATCGGACCGAAGGTTGTGACAGC
690 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGC
* * *** ** * *
12480793 AAGATCGGTAGCAAATAGAGGGGGACCCGACCGATCCCCACCTTGCGCATCCC-ACCCTCTGACC
754 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
12480857 GGCTGAGCACCCGCACGTTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCAT
819 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
12480911 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGCCGAGGGTTGCGGCAG
1 TCCCAGTCTAAG-AT-C--AG---------A--C------C--A--GA-CCGAGGGTTGCGGCAG
* * *
12480976 CACATGCTGGGCTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
40 CACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
* * * * **
12481041 ATCATCGAAAAACCTAACCGGTGGCATTGGGGTTCCGGTGA-CGGGGGGGCCGGAGGGGTGTGCG
105 ATCGTCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGG-GGGGTGTGCG
* *
12481105 CACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCTCTCATCAAACCT
168 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
12481170 CGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
233 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
12481235 GTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
298 GTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
12481299 TGAATTCTTTTGTGCATGCCAACAAAAATAAAAGGCTCATGTCTACCAAGTTTGGGGCCAAAACC
362 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * ** *
12481364 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
427 CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
12481429 ACGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-C
492 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
12481493 ATAAAAATGGCATTGGCATGCA-AAATTATGAAGATGTGGCCTAAACCCACCTACCACCCTTATC
557 ATAAAAATGGCATTGGCATGCAGAAA-TATGAAGATGT-GCCTAAACCCACCTACCACCC-TATC
* *
12481557 CATCCACGGCCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGCCCGCGCGCCCGTATCCCTGC
619 GATCCACGG-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-GCCCGCCCGCCCG---CCC-GC
* * * *
12481622 TCGTTCCGTTCGGTTGGCTTAGGCCATACGGAGTTCATT-CCAGTCTAAGCTCGGACCAGACTGT
678 TCGTTTCG-TCGGTTGGCTTAGG-CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG-
* * * * * * * *
12481686 GGGGTTGCGGCAGCATGATCGACAGTATTGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGTAT
740 AGGGTTGTGGCAGCAGGATCGGCAGCA-CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * * *
12481751 CCC-ACCCTCTAGCCAGCTGAGGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAT
804 CCCGCCCCTCTGGCCGGCTGA-GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-
12481815 GTTCAT
867 GTTCAT
* **
12481821 TCCCAGTCTAAGCATATGGAGTTCGATTCCCACTAAGATCAAATTAGAACCGTAGGGTT-CAACA
1 TCCCAG--T---C-TA---A----GA-T----C--AGA-C----CAG-ACCG-AGGGTTGCGGCA
* * **
12481885 GCACATGCTAGGGCTCAGGCATGTGGTTGGTG-C-CATATTTTCTTCGTCGGGGCACCCGTCGTT
39 GCACATGCT-GGGCTCGGGCATGT-GTTGGTGCCGCAT-TTTTCTTCGTCGGGGCA-CCATCGCC
* ** *
12481948 GGAGCATCGTCGGAGAAACCTTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGCAAGGTGGG
100 GGAGCATCGTCGGAG-AACC-TAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC----CGGG
* *
12482013 GGGTGTCCGCAC-T-ATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
159 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
12482076 ACCAAACCTTGAGAAC-CACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
224 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
12482140 GCCATTAAAGTGTCTGAAATTGGGAACATTTTTTTCAAATGGTCACATAATCTTGTACACTTCGA
289 GCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
12482205 G-TTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAAATACAAGGATCATGTCTACCAAGTTTGG
353 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
12482268 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGA
417 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
*
12482333 AAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
482 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
12482398 TTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCGACCA
547 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
12482463 CCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCAGGCCGACGTAGTGGCCGCCCACCCGCCCG
612 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * * *
12482528 CTCGTTTTGTCGGTTGGCTTAGGGATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG
677 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * *
12482593 GG-T-T---A-C--GA----CAGCACACAGAGGAGGACCCGACCGCTCCTCGGCTTGCGCATCCC
742 GGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * * * * *
12482646 GCCCCTTTGCCCGTCTAAGCTCCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCA
807 GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
12482711 T
872 T
*
12482712 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACTGAGGGTTGTGGCAG
1 TCCCAGTCTAAG-AT-C--AG---A----C---C--AG-----A-C---C-GAGGGTTGCGGCAG
* * * * *
12482777 CACATGCTGGGCTCTGGCATGTGTTTGTTGCTGC-TTATTTCTTCGTCGGGGCACCATCGTCTGA
40 CACATGCTGGGCTCGGGCATGTG-TTGGTGCCGCATT-TTTCTTCGTCGGGGCACCATCGCCGGA
** * * * *
12482841 TTATTGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGAGCCGGGGGGTGTGCG
103 GCATCGTCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCG
* *
12482906 CACATGATGTACGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
168 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
12482971 -TAGGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
233 CGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
12483035 AGTGTCTGAAATGGGGATAATTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGC
297 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
12483100 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAAAT
362 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
12483164 CCTTTCGAAAAAATTTTAAAAAAATCCCG-ACCGTAAAAAGTTT-TAAAATCGTGAAAAATAGAA
427 CCTTTCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * *
12483227 AA-TAGTTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAATGTATTTA-GA
491 AACGAG-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-ATGAATTTACAA
* * *
12483290 GCCATAAAAAATGGCATTGGCATGCAAAAATATGAAGTATGTTGCTTAAA-CCACATACCA-CCT
554 GCCAT-AAAAATGGCATTGGCATGCAGAAATATGAAG-ATG-TGCCTAAACCCACCTACCACCCT
* * * * * *
12483353 ATTCGATCCAACCGCTTTCACA-CCCATCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCAGCACGC
616 A-TCGATCC-ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCCCGC
* * * **
12483417 TTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCATTCTAAGATTGGACCAGACCGAGG
678 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * * * * *
12483482 GTTGTAGAAACAGGATTGGCAGCATGCAGAGGGGGACCCGACCGATCCCCAGC-TGCACATCCTG
743 GTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * *
12483546 CCCCTCTGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCAT
808 CCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
12483611 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGGGGCAGCACATGCTGGGCTCAGGCATGTGCTG
1 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * * * * * **
12483676 GTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCAGAGAACTTAACTGGTGATA
66 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGCA
* *
12483741 TTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGTTGGGTGCTGGTACT
131 TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
** *
12483806 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTTAGAACTCACACCCCCATAAAGAGCAT
196 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
12483871 TTGAGATTCTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGTCATTTTTTTCAA
261 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
12483936 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
326 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
12484001 ACAAGTATCGCGTCTACCATGTTT-AGGCCTAAAA---C-TTC---------TT------T----
391 ACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
*
12484042 ---CG----AA-----AAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACG
455 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
12484095 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
520 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * ** * *
12484160 TGAAGATGTACCTAAACGCACCTACCACCCTACCGATCCACGGCTTATGCATCCCATATCTCTGG
585 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * ** * *
12484225 CTGGCGTAGTGCCCGTCCGCCTACCCACCAGCTCGTTTCGTTTGTTAGCTTAGGCATAGGGAGTT
650 CCGGCGTAGTGCCCGCCCGCC--CGC-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
12484290 CATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAACAGGATCGACAGCATGTAGAGGG
711 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGG
** ** * * * * *
12484355 GGATAC-AGCCGATCCCCAACTTACGCATCTCGCCCCTTTGGCCGGCTGAGCACCCGCATGCTCA
776 GGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
* *
12484419 TTTCATGAGTTGACTTAGGCATACGGAGTTCAT
840 TTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
12484452 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGAATGTGCTG
1 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* *
12484517 GTGCCGTATTTTTCTTCGTCGGGGCACCAT--------CA---TCGGAGAACCTAACCGACGGCA
66 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGCA
* * * * * * * *
12484571 TTGGGGTTTCGGCGATCGGGGTG-TGGGGGGTTGTGCGCACAAGATGTGGGATGGGTGGTGGTAG
131 TTGGGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
12484635 ATGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
195 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
12484700 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCA
260 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * **
12484764 AATGGTCACAAAATCTTGTACACTTTGAGTTTCTAGCTGAATTTTTTTGTGAATGCCAAGAAGGA
325 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * *
12484829 TACAAGGATCACGTCTACCAAGTTTGGGACCAAAATTCCTTCCAAAAAAATTTAAAAAAATCCCG
390 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
* ** *
12484894 AATCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCCTGAAACTTCACG
455 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * *
12484959 TCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACGTAGAAATA
520 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
12485024 TGAAGACGTGCCTAAACCCACCTACCACCCTAACGATCCATGGCTTGCGCATCCCGTCTCTCTGG
585 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
12485089 CCGACGTAGTGCCTGCCCGTCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT
650 CCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * *
12485154 CCCAGTCTAAGATC-GAACCAGATC-ATGGGTAGCGGCAACAAGATCAGTAGCACGTAGAGGGGG
715 CCCAGTCTAAGATCAG-ACCAGACCGA-GGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * *
12485217 ACCC-AGCCGATCCCCGGCTTGCCCATCCCACCACTCTGGCCGGCTGAGCACCCGCATGCTCGTT
778 ACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
*
12485281 TCGTGGGTTGACATAGGCATACGGAGTTCAT
842 TCGTGGGTTGACTTAGGCATACGGAGTTCAT
* ** *
12485312 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAAAGCACATGCTGGGCTCAGGCATGTGTTG
1 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * * * * * *
12485377 GTGTCGTATTTTTCTTCGTCGGGGAACCATCACCGGAGCATCGTCGGAAAACCTGAGCGGCAGCA
66 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGCA
* *
12485442 TTGGGGTTTCGACGATCGGGGGGACC-GGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTAC
131 TTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
12485506 TTGGCCCTTATATTGCCCCCCTATCCCTCATTAAAACCTTGAGAACTCACACCCCCTTAAAGAGC
195 TTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
12485571 ATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTC
259 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* **
12485635 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAGG
324 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
*
12485700 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCC-TTCTGAAAAAA-TTTAAAAAAGTC
389 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAA-TC
* * * * *
12485763 TCGAACCGCAAAAAGTTTCAAAAATAATGAAAAATAGAGAACGAGTCGTCTTGCCCTGAAACTTC
452 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
12485828 ACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACAT--AG
517 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG--CATGCAG
*
12485891 AAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
580 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
12485956 TCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
645 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * * * * *
12486021 TCATTCCCAGTCGAAGATTAGACCAGATCAAGGGTAGTAGCAACAAGATCGGCATCACGTAGAGG
710 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * * * *
12486086 GGGACCCGGCCGATCCTCGGCTTGCGCATCCCACCACTCTGGCTGACTGAGCACCCGCATGCTCG
775 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
12486151 TTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
840 TTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* ** * ** *
12486184 TCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGAAAGCACATGCTGGGCTCAGGCATGTGTTG
1 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * * * * * *
12486249 GTGCCGTATTTTTCTTCGTCAGGGCACCATCGCCAGAGCATCATCGGAAAACCTGAGCGGCAGCA
66 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGCA
* * * *
12486314 TTGGGGTTTCGGCGATCGACGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTAC
131 TTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
12486379 TTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
195 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
12486443 TTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGTACACTTTTTTCA
260 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
12486508 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCAAGCCAACAAAAA
325 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * **
12486573 TACAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGGAAAAATTTTAAAAAATCCTA
390 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
* *
12486638 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACG
455 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* ** *
12486703 TGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATTTCATTGGCATGTAGAAATA
520 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
12486768 TGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTGCGCATCCCGTCTCTCTGG
585 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * * *
12486833 TCGACGTAGAGCCCGCCTGCCTGCCCACCCGTTCGTTTCGTTGGTTGCCTTAGGCATACGAAGTT
650 CCGGCGTAGTGCCCG-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *
12486898 CATTCCCAGTCTAATATCGGACCATACCAAGGG-T-T---A-C--GA----CAACACGCAGAGGG
711 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * * *
12486951 TGACCCGATCGATCCTCGGCTTGC-CATCCCGCCCTTCTGGCCGGCTAAGTACCTGCACGCTCAT
776 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC--
* * * *
12487015 TTTATGGGTTGACCTAGGCATACTAAGTTGATTCCCAGTCTAAAGCATACGAAGTTCAT
839 -------GTT-TCGT-GG--------GTTGA----C--T-T-AGGCATACGGAGTTCAT
* * * ** *
12487074 TCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGATAGCACATGCTAGGCTCGGGCATGTGTTG
1 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
** * ** *
12487139 GTGCCATATTTTT-TTGCGTCGGGGCACCATCGCCGGAGCATCG-CTAGAGAACCTGGCCGGTGG
66 GTGCCGCATTTTTCTT-CGTCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTAACCGGCGG
* ** * *
12487202 CATTGGGGTTCTGGTGATCGAGGGGGCCGGGGGGTGTGCCCACATGATGTACGATGGGTGCTGGT
129 CATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
12487267 TCTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAACAGA
193 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA-AGA
*
12487332 GCATTTGAGA-TTTACAGG-TTGCTACCAGTAGCCATTAACAGTGTCTGAAATGGGGACACTTTT
257 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA-AGTGTCTGAAATGGGGACACTTTT
** * * *
12487395 TTACAAATGGTCGTAAAATCTTGTACACTTCAGATTTTTTAGCTGAATGTCTTTTGTGGATGCC-
321 TT-CAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCA
* * * * * *
12487459 ACAAAAATACAAAGGATCACGTCTTCCAAGTTTGGGGGCAAAAAATCC--ACTAAAAAATTTTTA
383 ACAAAAATAC-AAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTTCGAAAAAATTTTAA
* ** *
12487522 AAAAT--CAAACCACAAAAAGTTTCAAAAATTATG-AAAATAGAAAACGAGTCGTCTTGCCATG-
446 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
12487583 AACTTC-CGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCCA
511 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG-CA
* * ** * * *
12487647 TGTAGAAATATAAAGATGCACCTAAACCCAGCTACCGACCGTAATCGATCCACCAGCTTGCGCCA
575 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCCT-ATCGATCCA-CGGCTTGCG-CA
* * *
12487712 T-CCGTCTCCTCCTGGCCGGACGTAGTG-CCG-CC-CCCGCTC-ATC--TTCGTCGGATGGCTTA
636 TCCCGTCT-CT-CTGGCCGG-CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
12487770 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGGTAGCAGGATCGGC
698 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * ** * * * * *
12487835 AGCACGCAGAGGAGGATCTGGTCGATCCCCGGCTTGCCCATCCTGTCCGTCTGGTCGGCTGAGCA
763 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * *
12487900 CCCGTACGCTCATTTCATGGGTTGACTTAGGCATATGGGGTTCATTCCCAGTCTAAGCACACAGA
828 CCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA---GG--CA-T---A--C---G------GA
12487965 GTTCAT
867 GTTCAT
* * * * * *
12487971 TCCTAGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCACATGCTGGGCTCTGGCATGTGTTG
1 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* ** * * * *
12488036 GTGCCACATTTTTCTTCACCGGGGCACCATCGCAGGAGCATCGTCGGAGAACCTGACTGACGGCA
66 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGCA
* *
12488101 TTGGGGTTTCGACGATCGGGGGGCCAGGGGGGTGTGTGCGCACATGATGTGTGATGGGTGCTGGT
131 TTGGGGTTCCGACGATCGGGGGGCC--GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
12488166 ACTTGGCCTTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
193 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
12488231 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
12488296 CAAATGGTCACAAAATCTTGTACACCTCAAGTTTCTAGCTG-ATTTTTTTGTGCATGCCAACAAA
323 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
*
12488360 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
388 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCC
* *
12488425 CGAA-CGACAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTC
453 CGAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* ** *
12488489 ACGTGAAGGCTTAGGGGACTGTTGTATGAATTTACAAGCCATAAAAATGGCATTTGCATGCAGAA
517 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * *
12488554 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGTGCATCCCATCTCTC
582 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* ** * * *
12488619 TGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCATCGGTTTTCCTAGGCATACAGAGCTC
647 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* *** * *
12488680 ATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTCCAGCAGCAGGATCGACAGCACACAGAGGGG
712 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * ** *
12488745 GACCCGAACGATGCTCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCACCGGCACGAACATT
777 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG--C---
** * * *
12488810 TTATCGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTTTAAGCATATGGAGTTCAT
837 ---TC-G-T---TT---C--GTGG-GTTGA----C---TTAGGCATACGGAGTTCAT
* * * * *
12488867 TCCCAGTCTAAGATCAAACTAGACCGAGGCTTGTGGCAGCACATTCTGGGCTCGGGCATGTGTTG
1 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * ***
12488932 GTGCCGCATTTTTCTTC-ACTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGATAGC
66 GTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGC
** * * *
12488996 ATTGGGGTTCCGGGGATCGGGAGGGCCGTGGGCGGTGTGCACACATGATGTGCAACGGGTGCTGG
130 ATTGGGGTTCCGACGATCGGG-GGGCCG-GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
12489061 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGA
192 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
12489126 GTATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
257 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
12489191 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATGTTTTTGTGCATGCCAAAAA
322 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
12489256 AAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATC
387 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
* ** *
12489321 TCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
452 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
12489386 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGTAGAA
517 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* *
12489451 ATATGAAGATGTGCCTAAACCCACCTATCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTC
582 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
12489516 TGGACAGCGTAGTGCCCGCCAGCCCGCCCGCCCGTTCGTTTCTTCGGTTGGCTTAGGTATACGGA
647 TGGCCGGCGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
*
12489581 GTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGG-T-T---------AT-GGCAGCACGCAGA
708 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGA
* * * * * *
12489634 GGGGGACCCGACCAATCTCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGAT
773 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT
12489699 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
838 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
12489734 TCCCAGTCTAAGATC-GCACCGGACCTAGGGTTGAGGCAGCACATGCTGCGCTCGGGCATGTGTT
1 TCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTT
** ** * * *
12489798 GGTGTAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAA-CTGACCGACGGC
65 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGC
* * * * *
12489862 ATTGGGGTTCCGGCAATCGGGGGGGCTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAAC
130 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
12489927 TTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
195 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
** *
12489992 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATACGGACACTTTTTGCA
260 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
12490057 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAA
325 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
*
12490122 TACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAAATTTTAAAAAATCCC
390 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAAAATTTTAAAAAATCCC
* * **
12490186 GAACTGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
454 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
***
12490251 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
519 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
12490316 ATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTG
584 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
12490381 GCCGGCGTAGT------------GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
649 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * * * *
12490434 TCCCAGTCTAAGATCAGACCGGATGGAGGGTTGCGGCAGCAGGATCAGTAGCATGCAGAGGGGGA
714 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * * * * *
12490499 CCTGACCGATCCCCTGCTTGTGCATCCCACCCCTCTTGTCGGCTGAGCGCTCGCACGCTCGTTTC
779 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* *
12490564 GTGGGTTGACTTGGGCATACAGAGTTCAT
844 GTGGGTTGACTTAGGCATACGGAGTTCAT
*
12490593 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCCAAGATCAGACCGGACCGAGGGTTGCGACAG
1 TCCCAGTCTAAG-AT-C--AG---------A---C-----C--A---GACCGAGGGTTGCGGCAG
** *
12490658 CACATGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT--------C
40 CACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
* * * *
12490715 A-C--CGGAGAACCTGACAGACGGCATTGGGGTTCCGATGAT--------CGGGGGGTGTGCGCA
105 ATCGTCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCA
* *
12490769 CATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
170 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
12490834 AGAACTCACA-CCCC--------C----------TTA-A-----------AG-A---ATTAAAGT
235 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
12490864 GTCTGAAATGGGGACACTTTTTTCAAATGGTTAGAAAATCTTGTACACTTCGAGTTTTTAGCTGA
300 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
12490929 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTT-GGGCCAAAAAT-CT
365 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
** * ** *** *
12490992 CCCGAAAAACTTAAAAAAAATTTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
430 TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * **
12491057 AGTCGTCTTGCCAGGAAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGGTAT
495 AGTCGTCTTGCCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
12491122 GAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
559 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
12491187 ACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT----GCCAGCCCGCCTGCTCGTTTCGTCG
624 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* ** * * **
12491248 GTTGGCTTAGGCTTAC-GATGTTCATTCCCTA-TCTAAGATCAGACTGGACTGAGGGTTGCGATA
689 GTTGGCTTAGGCATACGGA-GTTCATTCCC-AGTCTAAGATCAGACCAGACCGAGGGTTGTGGCA
* *
12491311 GCAGGATTGGCAGCACACAGAGGGGGACCCGA
752 GCAGGATCGGCAGCACGCAGAGGGGGACCCGA
12491343 TTGATCCTCA
Statistics
Matches: 12095, Mismatches: 1389, Indels: 1042
0.83 0.10 0.07
Matches are distributed among these distances:
829 104 0.01
830 237 0.02
831 150 0.01
832 115 0.01
833 4 0.00
835 1 0.00
836 16 0.00
837 47 0.00
838 43 0.00
839 167 0.01
840 103 0.01
841 150 0.01
842 1 0.00
843 2 0.00
847 68 0.01
848 5 0.00
853 1 0.00
855 2 0.00
858 3 0.00
859 112 0.01
860 255 0.02
861 3 0.00
862 4 0.00
863 489 0.04
864 218 0.02
865 4 0.00
866 33 0.00
867 204 0.02
868 5 0.00
869 3 0.00
870 6 0.00
871 185 0.02
872 1373 0.11
873 158 0.01
874 125 0.01
875 36 0.00
876 530 0.04
877 7 0.00
878 6 0.00
879 111 0.01
880 217 0.02
881 233 0.02
882 222 0.02
883 6 0.00
884 17 0.00
885 217 0.02
886 297 0.02
887 171 0.01
888 245 0.02
889 58 0.00
890 298 0.02
891 151 0.01
892 126 0.01
893 135 0.01
894 64 0.01
895 75 0.01
896 543 0.04
897 469 0.04
898 113 0.01
899 563 0.05
900 285 0.02
901 247 0.02
902 5 0.00
903 2 0.00
904 11 0.00
905 606 0.05
906 642 0.05
907 180 0.01
908 123 0.01
909 49 0.00
910 31 0.00
911 50 0.00
912 57 0.00
913 34 0.00
914 288 0.02
915 143 0.01
916 10 0.00
917 13 0.00
918 2 0.00
919 2 0.00
921 2 0.00
922 1 0.00
923 2 0.00
926 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGCA
TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGA
ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCAT
Found at i:12487070 original size:27 final size:27
Alignment explanation
Indices: 12487032--12487084 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
12487022 GTTGACCTAG
* *
12487032 GCATACTAAGTTGATTCCCAGTCTAAA
1 GCATACGAAGTTCATTCCCAGTCTAAA
12487059 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12487085 GATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (27 bp):
GCATACGAAGTTCATTCCCAGTCTAAA
Found at i:12488865 original size:896 final size:891
Alignment explanation
Indices: 12485297--12491351 Score: 7097
Period size: 896 Copynumber: 6.9 Consensus size: 891
12485287 GTTGACATAG
* *
12485297 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAAAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * ** ** * ** *
12485362 CTCAGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGAACCATCACCGGAGCATCGTCGGAAA
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
12485427 ACCTGAGCGGCAGCATTGGGGTTTCGACGATCGGGGGGACC-GGGGGTGTACGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGC
* * *
12485491 GATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCCTATCCCTCATTAAAACCTTGAGAACTCAC
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCAC
* *
12485556 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
*
12485621 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
* ** * *
12485685 TGCATGCCAAGAAGGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
12485750 A-TTTAAAAAAGTCTCGAACCG-CAAAAAGTTTCAAAAATAATGAAAAATAGAGAACGAGTCGTC
454 ATTTTAAAAAA-TCCCGAA-CGACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
12485813 TTGCCCTGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** *
12485878 CATTGGAACATAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
12485943 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
12486008 AGGCATACAGAGTTCATTCCCAGTCGAAGATTAGACCAGATCAAGGGTAGTAGC-AACAAGATCG
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT--T-GCGAGCAGGATC-
* * * * * * * * *
12486072 GCATCACGTAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCACCACTCTGGCTGACTGAG
769 ACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
12486137 CACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
12486195 G-AT-C-G-G---------A--C-----T------GGACCGAGGGTTGTGAAAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* ** ** * * * * *
12486234 CTCAGGCATGTGTTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCGCCAGAGCATCATCGGAAA
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
12486299 ACCTGAGCGGCAGCATTGGGGTTTCGGCGATCGACGGGGCCGGGGGGTGTACGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
12486364 GATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
12486428 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
* * *
12486493 GGTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGC
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
* * * *
12486558 GCAAGCCAACAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGGAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** * * *
12486623 TTTTAAAAAATCCTAAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTT
455 TTTTAAAAAATCCCGAA-CGACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* **
12486687 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATTTCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12486752 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTGCG
584 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
12486817 CATCCCGTCTCTCTGGTCGACGTAGAGCCCGCCTGCCTGCCCACCCGTTCGTTTCGTTGGTTGCC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C--CC-G----CCCGCTCGTTTCGTCGGTTGGC
* * * * *
12486882 TTAGGCATACGAAGTTCATTCCCAGTCTAATATCGGACCATACCAAGGGTT---A-C--GA-CA-
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAGCAGGATCAC
* * * * * *
12486939 A-CACGCAGAGGGTGACCCGATCGATCCTCGGCTTG-CCATCCCGCCCTTCTGGCCGGCTAAGTA
771 AGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * ** *
12487002 CCTGCACGCTCATTTTATGGGTTGACCTAGGCATACTAAGTTGATTCCCAGTCTAAA
836 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AA
* * * *
12487059 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGATAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* ** * *
12487124 CTCGGGCATGTGTTGGTGCCATATTTTT-TTGCGTCGGGGCACCATCGCCGGAGCATCG-CTAGA
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTT-CACCGGGGCACCATCGTCGGAGCATCGTC-GGA
* ** * *
12487187 GAACCTGGCCGGTGGCATTGGGG-TTCTGGTGATCGAGGGGGCCGGGGGGTGTGCCCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTTC-GGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATG
* * * *
12487251 TACGATGGGTGCTGGTTCTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
12487316 ACACCCCCTTAACAGAGCATTTGAGA-TTTACAGG-TTGCTACCAGTAGCCATTAACAGTGTCTG
257 ACACCCCCTTAA-AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA-AGTGTCTG
** *
12487379 AAATGGGGACACTTTTTTACAAATGGTCGTAAAATCTTGTACACTTCAGATTTTTTAGCTGAATG
320 AAATGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCA-AGTTTTTAGCTGAAT-
* * * * *
12487444 TCTTTTGTGGATGCC-ACAAAAATACAAAGGATCACGTCTTCCAAGTTTGGGGGCAAAAAATCC-
382 TTTTTTGTGCATGCCAACAAAAATAC-AAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCT
* * * * * *
12487507 -ACTAAAAAATTTTTAAAAAT--CAAACCACAAAAAGTTTCAAAAATTATG-AAAATAGAAAACG
445 TCCGAAAAAATTTTAAAAAATCCCGAACGACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
12487568 AGTCGTCTTGCCATG-AACTTC-CGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATA
510 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* ** * *
12487631 AAAATGGCATTGGCCATGTAGAAATATAAAGATGCACCTAAACCCAGCTACCGACCGTAATCGAT
575 AAAATGGCATTGG-CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCCT-ATCGAT
* *
12487696 CCACCAGCTTGCGCCAT-CCGTCTCCTCCTGGCCGGACGTAGTG-CCG-CC-CCCGCTCATCTTC
637 CCA-CGGCTTGCG-CATCCCGTCT-CT-CTGGCCGG-CGTAGTGCCCGCCCGCCCGCTCGT-TTC
* * *
12487757 GTCGGATGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGG
696 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-G
* * * * ** * ** * * *
12487822 TAGCAGGATCGGCAGCACGCAGAGGAGGATCTGGTCGATCCCCGGCTTGCCCATCCTGTCCGTCT
760 -AGCAGGATC-ACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCT
* * * *
12487887 GGTCGGCTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATATGGGGTTCATTCCCAGT
823 GGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
12487952 CTAA
888 CTAA
* * * *
12487956 GCACACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTAC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGA-CAGCACATGCTGG
*
12488020 GCTCTGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCG-CAGGAGCATCGTCGGA
65 GCTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTC-GGAGCATCGTCGGA
* *
12488084 GAACCTGACTGACGGCATTGGGGTTTCGACGATCGGGGGGCCAGGGGGGTGTGTGCGCACATGAT
129 GAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGCC--GGGGG-GTGTGCGCACATGAT
* * * *
12488149 GTGTGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
12488214 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
* *
12488279 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCAAGTTTCTAGCTG-ATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
12488343 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
12488408 AAAATTTTAAAAAATCCCGAACGACAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACGACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* **
12488473 CTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACTGTTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
12488538 GCATTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTT
581 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** *
12488603 GTGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTTTCCTAGG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
12488668 CATACAGAGCTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTCCAGCAGCAGGATCGACAG
711 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-G-AGCAGGATC-ACAG
* * * *
12488733 CACACAGAGGGGGACCCGAACGATGCTCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCACC
773 CACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACC
* ** * * * *
12488798 GGCACGAACATTTTATCGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTTTAA
838 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * ** * *
12488852 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGCTTGTGGCAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* *
12488917 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
** * * *
12488982 ACCTGACCGATAGCATTGGGGTTCCGGGGATCGGGAGGGCCGTGGGCGGTGTGCACACATGATGT
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGG-GGGCCG-GGG-GGTGTGCGCACATGATGT
* * *
12489047 GCAACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12489112 CACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
* * *
12489177 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATGTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* *
12489242 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
12489307 AATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
453 AATTTTAAAAAATCCCGAACGACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
12489372 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12489437 ATTGGTATGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCAATCCACGGCTTGC
583 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
12489502 GCATCCCGTCTCTCTGGACAGCGTAGTGCCCGCCAGCCCGCCCGCCCGTTCGTTTCTTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCG--C--TCGTTTCGTCGGTTGG
* * *
12489567 CTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTT---A--TGG----
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAGCAGGATCA
*
12489623 CAGCACGCAGAGGGGGACCCGACCAAT-CTCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
770 CAGCACGCAGAGGGGGACCCGACCGATCCTC-GGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
12489687 CACCCGTACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
834 CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12489741 -C-TA---AG---------A-TC---G--C--ACCGGACCTAGGGTTGA-GGCAGCACATGCTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-ACGACAGCACATGCTGG
*
12489783 GCTCGGGCATGTGTTGGTG-TAGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGA
65 GCTCGGGCATGTGTTGGTGCCA-CATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * *
12489847 GAA-CTGACCGACGGCATTGGGGTTCCGGCAATCGGGGGGGCTGGGGGTGTGCGCACATGATGTG
129 GAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
12489911 CGATGGGTGCTGGAACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12489976 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
** * *
12490041 ACGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
*
12490106 TGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
**
12490170 AATTTTAAAAAATCCCGAACTGA-AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AATTTTAAAAAATCCCGAAC-GACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
12490234 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
12490299 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGACTTG
582 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
12490364 CGCATCCCATCTCTCTGGCCGGCGTAGT--------GCCCGCTCGTTTCGTCGGTTGGCTTAGGC
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* ** *
12490421 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTGCGGCAGCAGGATCAGTAGC
712 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-G-AGCAGGATCA-CAGC
* * * * * * * * *
12490486 ATGCAGAGGGGGACCTGACCGATCCCCTGCTTGTGCATCCCACCCCTCTTGTCGGCTGAGCGCTC
774 ACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * * *
12490551 GCACGCTCGTTTCGTGGGTTGACTTGGGCATACAGAGTTCATTCCCAGTCTAA
839 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12490604 GCATACGGAGTTCATTCCCAGCCCAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
** ** **
12490669 CTCGGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCA---T-----CA-C--CGGAGA
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** *
12490723 ACCTGACAGACGGCATTGGGG-TTC--CGAT-----GATCGGGGGGTGTGCGCACATGATGTGTG
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
12490780 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
12490844 CCCC--------C----------TT--A--------A--AG-A---ATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
12490875 GGACACTTTTTTCAAATGGTTAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
* * * *
12490940 CATGCCAACAAAAATACAAGGATCACGTCTACCATGTTT-GGGCCAAAAAT-CTCCCGAAAAACT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** *** * *
12491003 TAAAAAAAATTTTGAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTAAAAAATCCCGAA-CGACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * ** *
12491067 CCAGGAAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGGTATGAAAATGGCA
520 CCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12491132 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
12491197 CATCCCGCCTCTCTGGCCGACGTAGTGCCAGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCTT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
** * **
12491262 AC-GATGTTCATTCCCTA-TCTAAGATCAGACTGGACTGAGGGTTGCGATAGCAGGATTGGCAGC
714 ACGGA-GTTCATTCCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCG--AGCAGGA-TCACAGC
* **
12491325 ACACAGAGGGGGACCCGATTGATCCTC
774 ACGCAGAGGGGGACCCGACCGATCCTC
12491352 AACTTGCACA
Statistics
Matches: 4491, Mismatches: 494, Indels: 403
0.83 0.09 0.07
Matches are distributed among these distances:
830 65 0.01
831 151 0.03
832 114 0.03
835 1 0.00
836 2 0.00
838 3 0.00
839 97 0.02
840 2 0.00
846 1 0.00
847 62 0.01
848 2 0.00
849 1 0.00
851 5 0.00
852 1 0.00
854 2 0.00
858 1 0.00
859 99 0.02
860 2 0.00
861 1 0.00
862 2 0.00
863 527 0.12
864 38 0.01
865 9 0.00
866 34 0.01
867 174 0.04
868 10 0.00
869 2 0.00
870 2 0.00
871 84 0.02
872 446 0.10
873 65 0.01
874 12 0.00
875 19 0.00
876 62 0.01
877 4 0.00
878 2 0.00
879 1 0.00
881 1 0.00
882 1 0.00
883 2 0.00
884 10 0.00
885 122 0.03
887 2 0.00
888 52 0.01
889 46 0.01
890 212 0.05
891 107 0.02
892 55 0.01
893 148 0.03
894 60 0.01
895 65 0.01
896 544 0.12
897 476 0.11
898 153 0.03
899 150 0.03
900 61 0.01
901 59 0.01
903 1 0.00
905 59 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACGACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAGCAGGATCACAGCACGCAGA
GGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT
CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12492127 original size:26 final size:27
Alignment explanation
Indices: 12492086--12492139 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
12492076 GTTGACTTAG
* * *
12492086 GCATACGGAGGTTCATTCCTAGTCTAA
1 GCATACAGAGGTTCATTCCCAATCTAA
12492113 GCATACAGA-GTTCATTCCCAATCTAA
1 GCATACAGAGGTTCATTCCCAATCTAA
12492139 G
1 G
12492140 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (27 bp):
GCATACAGAGGTTCATTCCCAATCTAA
Found at i:12494780 original size:26 final size:26
Alignment explanation
Indices: 12494751--12494803 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12494741 GTTGACTTAG
*
12494751 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12494777 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12494803 G
1 G
12494804 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12495661 original size:891 final size:898
Alignment explanation
Indices: 12492980--12496033 Score: 4273
Period size: 902 Copynumber: 3.4 Consensus size: 898
12492970 GTTGACTTAG
* *
12492980 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGATAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGTAGCACATGCTGG
*** * * *
12493044 GCTCGGGCATGTGCTGGTTCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGG-TCAACATTTTACTTCACCGGGGCACCATCGCCAGAGCATCACCGGAG
* * * * * *
12493109 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTG
129 AACCTGACCAGCAGCATTAGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
12493174 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
12493239 ACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGAGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12493304 GGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
12493369 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTTAT-GAAAA
389 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAA
* *
12493433 AATTATAAAAAATCTCAAACCGCAAAAAGTTTTC-AAAATTGTGAAAAATAGAAAACGAGTCGTC
453 AATTATAAAAAATCCCAAACCGCAAAAAG-TTTCAAAAATTATGAAAAATAGAAAACGAGTCGTC
12493497 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCAATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC-ATTGTATGAATTTACAAGCAATAAAAATGG
12493562 CATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGTCTTG
581 CATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CACGTCTTG
* * *
12493627 CGCATCCCGTCTCTCTGGCCGGCATAGTGCTCGCCCGCCCGCCTGCCCGCTCATTTCGTCGGTTG
645 CGCATCCCGTCTCTCTGGCTGGCATAGTGCTCGCCCGCCCACCTGCCCGTTC-TTTC-TCGGTTG
* * *
12493692 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGCAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGA
* * * * * *
12493757 TTGGCAGCACATAGAGGGGGACCCCGATGATCCCCGACTTGCGCATCCCCGCGCCTC-GG-CGTC
773 TCGACAGCACATAGAGGGGGACCCGGTTGATCCCCGACTTGCGCAT-CCCGCCCCTCTGGCCGGC
* * *
12493820 TTAGCG-CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGCAGTTCATTCCCAGTCTAA
837 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12493881 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCAAGGGTTACGGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGTAGCACATGCTGGG
*** * * ***
12493946 CTCGGGCATGTGCTGGTGCAACATTTTACTTTGTCAGGGCACCATCGCCAAAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGT-CAACATTTTACTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGA
* * * *
12494011 ACCTGACCGGCAGCGTT-GCGGTT-TCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATG
130 ACCTGACCAGCAGCATTAG-GGTTCT-GACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATG
** **
12494074 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGATCCCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
12494139 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAGGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
12494204 ATGTGTACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
12494269 TGTGCATGCCAAGAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* ** * * * * *
12494334 AAATTTTTAAAAAATCCTGAACTGTAAAAA-TTTAAAAAATCATGAAAAATAGAAAATGAGTCGT
452 AAA-TTATAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGT
* * * *
12494398 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTAAAAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA-CATTGTATGAATTTACAAGCAATAAAAATG
* * * * * *
12494463 GCATTGGCATGTAGAAATATCAAGATGTGCCTAAACCCACTTGCCACCCTATCGATTCACGGCTT
580 GCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCACGTCTT
* * * ** * *
12494528 ACGCATCTCGTCTCTCTGGCTGACGCAGTGCCCGCCTGCCCA-CT---CGTT-TTGT-T-GGTTG
644 GCGCATCCCGTCTCTCTGGCTGGCATAGTGCTCGCCCGCCCACCTGCCCGTTCTT-TCTCGGTTG
* *
12494586 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCGAGGGTTGTGGCAGCAGG
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGTAGCAGG
* * * *
12494650 ATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGC
772 ATCGACAGCACATAGAGGGGGACCCGGTTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* *
12494715 TGAGCGCCTGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
12494777 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACAGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGTAGCACATGCTGGG
* * * * * * * *
12494842 CTCGGGTATGTGCTTGGT-ATCGTATTTTTCTTCACTGGGGCACCATTGTCGGAGCATCACCGAA
66 CTCGGGCATGTGC-TGGTCAAC--ATTTTACTTCACCGGGGCACCATCGCCAGAGCATCACCGGA
* * *
12494906 GAACCTGACCAACGGCATTAGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCAAATGATGT
128 GAACCTGACCAGCAGCATTAGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
12494971 GCGATCGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
12495036 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
**
12495100 TGGGGA-AC-TTTTTCAAATGGTCATGAAATC-TGTACACTTCGAG-TTTTAGCTGAA-TTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
12495160 GTGCATGCCAAACAAAAATACAAGGATCACATCTTCCAAGTTTGGGG-CAAAACTCCTTTCGAAA
388 GTGCATGCC-AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
12495224 AAATTATAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTC
452 AAATTATAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTC
*
12495289 TTGCCATGAAACTTCACGTGAA-GCTTAAGGGACATTGTATGAATTTACAA-TAAT-AAAA-GGC
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCAATAAAAATGGC
* * * *
12495350 ATT-GAATGCAAAAATATGAAGATGTACCTAAACCCACCTACCATCCTATCGATCACGTCTTGTG
582 ATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCACGTCTTGCG
12495414 CATCCCGTCTCTCTGGCTGGCATAGTGCTCGCCCGCCCACCTGCCCGTTCGTTTCATCGGTTGGC
647 CATCCCGTCTCTCTGGCTGGCATAGTGCTCGCCCGCCCACCTGCCCGTTC-TTTC-TCGGTTGGC
**
12495479 TTAGTG-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAACAT
710 TTAG-GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGAT
* * *
12495543 CAACAGCACACAGAGGGGGACCCGGTTGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTG
774 CGACAGCACATAGAGGGGGACCCGGTTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * **
12495608 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAACCTAA
839 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
12495668 GCATACGGAGTTCACTCCCAGTCTAAGATCGGACCGGATCGAGAGTTATGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGTAGCACATGCTGGG
* * **
12495733 CTCAGGCATGTGCTGGTGCAACATTTTACTTCACCGGGGCACCATCGCCAGAACATCGTCGGAGA
66 CTCGGGCATGTGCTGGT-CAACATTTTACTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGA
* * *
12495798 ACCTGACCAGCAGCATTACGGTTCTGATGATCGGGGGGGTCGAGGGGGTGTGCGCACATGATGTG
130 ACCTGACCAGCAGCATTAGGGTTCTGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * * *
12495863 CGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCTCTATCCCTCACCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
12495928 -TCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12495992 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
12496034 TGACTGGTGT
Statistics
Matches: 1889, Mismatches: 224, Indels: 87
0.86 0.10 0.04
Matches are distributed among these distances:
883 42 0.02
884 43 0.02
885 6 0.00
886 4 0.00
887 6 0.00
888 16 0.01
889 33 0.02
890 203 0.11
891 393 0.21
892 18 0.01
893 49 0.03
894 115 0.06
895 33 0.02
896 251 0.13
897 64 0.03
898 5 0.00
900 2 0.00
901 147 0.08
902 437 0.23
903 22 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTCAACATTTTACTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGAA
CCTGACCAGCAGCATTAGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TATAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCAATAAAAATGGCATTG
GAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCACGTCTTGCGCATC
CCGTCTCTCTGGCTGGCATAGTGCTCGCCCGCCCACCTGCCCGTTCTTTCTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCGACAGC
ACATAGAGGGGGACCCGGTTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCT
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12497063 original size:62 final size:62
Alignment explanation
Indices: 12496966--12497083 Score: 175
Period size: 62 Copynumber: 1.9 Consensus size: 62
12496956 GTTGGCTTAG
* *
12496966 GCATACGGAGTTCATTCCATGTCTAAGATTAGACCAGACCGAGGGTTACGGTAGCAGAATCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGAATCA
* * *
12497028 GCATACGGAGTTTATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTCCGGCAGCA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCA
12497084 CATGCTGGGC
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
62 47 0.94
63 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (62 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGAATCA
Found at i:12497923 original size:26 final size:26
Alignment explanation
Indices: 12497893--12497945 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12497883 GTTAACTTAG
12497893 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
*
12497919 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12497945 G
1 G
12497946 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12498061 original size:185 final size:185
Alignment explanation
Indices: 12497734--12498133 Score: 563
Period size: 185 Copynumber: 2.2 Consensus size: 185
12497724 GTTGGCTTAG
** *
12497734 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAAACCGAGGGTTGTGGTAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAAACCGAGGGTTGTGACAGTAGGATCGACA
* * **
12497799 GCACGTAGAGGGGGACCCGACCGATCCCCGGATTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGATTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGC
* *
12497864 TCGCATGCTCGTTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAATCTAA
131 CCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAATCTAA
* * * * * *
12497919 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA-TCGAACCTAGTGTTGTGACAGTAGGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AAACCGAGGGTTGTGACAGTAGGATCGAC
* *
12497983 AGCACGCAGTGGGGGACCCGACCGATCCCC-GACTTGCGCATCTCGCCCCTCTGGCCAGCTGAGC
65 AGCACGCAGAGGGGGACCCGACCGATCCCCGGA-TTGCGCATCCCGCCCCTCTGGCCAGCTGAGC
* * * * *
12498047 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
129 GCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAATCTAA
12498104 GCATACGGAGTTCATT-CCAGTCTAAGATCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA
12498134 AATCGGACTG
Statistics
Matches: 189, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
184 16 0.08
185 173 0.92
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAAACCGAGGGTTGTGACAGTAGGATCGACA
GCACGCAGAGGGGGACCCGACCGATCCCCGGATTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAATCTAA
Found at i:12498129 original size:25 final size:26
Alignment explanation
Indices: 12498078--12498129 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12498068 GTTGACTTAG
12498078 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12498104 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12498129 G
1 G
12498130 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12500955 original size:26 final size:26
Alignment explanation
Indices: 12500917--12500969 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12500907 GTTGACTTAG
* *
12500917 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12500943 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12500969 G
1 G
12500970 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12501842 original size:26 final size:26
Alignment explanation
Indices: 12501806--12501858 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12501796 GTTGACTTAG
* *
12501806 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12501832 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12501858 G
1 G
12501859 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12502743 original size:26 final size:26
Alignment explanation
Indices: 12502706--12502758 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12502696 GTTGACTTAG
12502706 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12502732 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
12502758 G
1 G
12502759 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12503541 original size:903 final size:899
Alignment explanation
Indices: 12500516--12505767 Score: 5962
Period size: 956 Copynumber: 5.8 Consensus size: 899
12500506 AAAAGTTTCA
* * *
12500516 AACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACG
1 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
12500581 TGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
66 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
12500646 TGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTGG
131 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
12500711 CCGGCGTAATGCCCG--CCCGCCCGCACGCTCTTTTCGTCAGTTGGCTTAGGCATACGAAGTTCA
196 CCGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
* * * *
12500774 TTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCT-GCAGCAAGATCGGCAGCA--CTGAGGGG
261 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG-TGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * *
12500836 GACCCGACCGAT-CTCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCACGCGCTCGT
325 GACCCGACCGATCCT-CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
** * *
12500900 TTAATGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCGCAGT
389 TTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACA-AGTTCATTCCCAGT
* * * * * *
12500965 CTAAGATTGAACCAGACCAAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
452 CTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCAC
** * * * * **
12501030 ATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGATCGGCGGCATTATGGT
517 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
**
12501095 TCCGGGGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
582 TCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
12501160 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTGAGA
647 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
12501225 TTTTACAGGTTTGCTGTCAGTAGCCATTGAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
712 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
12501290 ACAAAATCTTGTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
777 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * *
12501354 ATCATGTCTACCAAGTTTGGGGACAAACCTGCTTCTGAAAAAATTTTAAAAAATCCCG
842 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTG
* ** * *
12501412 AACCACAAAAAGTTTCAAAAATTGTGAATAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
1 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * *
12501477 TGAGGGCTTAAAGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
66 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
12501542 TAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA---------TCTGG
131 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * *
12501598 GCGGCGTAGTGCCCG--CTCGCCTGTCTGCTCGTTTCATCAGTTGGGTTAGGCATACGGAGTTCA
196 CCGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * *
12501661 TTCCCAATCTAAGATCAAACCAAACAGAGGGTTATAGTAGCAGGATCGGCAGCATGCAGAGGGGG
261 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * * *
12501726 ACTCGACTGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTAAGCACCCGCACACTCGTTT
326 ACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
12501791 CGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCT
391 CGTGGGTTGACTTAGGCATA-CGAGTTCATTCCCAGTCTAAGCATAC-AAGTTCATTCCCAGTCT
* *
12501856 AAGATCGGACCGGACCGAGGGTTGCGGCAACACATGCTGGGCTCAGGCATGTGCTGGTGCCACAT
454 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACAT
* * * * *
12501921 TTTTCTTCGTCGGGGCTCCATTGCCGGAGCATCG-CTGGAGAACCTGACCGACGACATTGAGGTT
519 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTT
* * * *
12501985 TCGACAATCGGGGTTGCGG-GGGGGGGTGTG-GCACATGA-GTGCGATGGGGTTCTGGTACTTGG
583 CCGACGATCGGGG--G-GGCCGGGGGGTGTGCGCACATGATGTGCGAT-GGGTGCTGGTACTTGG
* * *
12502047 -CCTTATATTGG-CCCCTAT-CCTCAT-AAACCTTGACGAACTCACA--CCCTTCAAGAGCATTT
644 CCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAAGAACTCACACCCCCTTAAAGAGCATTT
* *
12502106 GAGA-TTTATAGGTTTTGCTGCC-GTAG-CATCTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
708 GAGATTTTACAGG-TTTGCTGCCAGTAGCCAT-TAAAGTGTCTGAAATGGGGACACTTTTTTCAA
12502168 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
771 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
** * *
12502233 ACAAGGATCATCGTCTACCAAGTTTGGGGATAAAACTCCTT-TCAAAAAAATTTTAAAAAATCCC
836 ACAAGGATCA-CGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCT
*
12502297 A
899 G
* ** *
12502298 AACGGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACCAGTCGTCTTGCCATGAAACTTCACG
1 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
12502363 TGAAGGCTATAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
66 TGAAGGCT-TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * * * *
12502428 ATGAAGTTGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCATGCGCATCCTGTTTCTCTA
130 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * *
12502493 GCCGACGTAGTGCCCGCCCGCCCGGCCGCTCGCTCGTTTCGTCAGTTAGCTTACGCATACGGACT
195 GCCGGCGTAGTGCCCG-CC-CCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGT
* * *
12502558 TCACTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCAGCAGCACGCAGAGG
258 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGG
* * ** *
12502623 AGCACCCGGTCGATCC-CTGGCTTGCGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTC
323 GGGACCCGACCGATCCTC-GGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
12502687 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
387 GTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATAC-AAGTTCATTCCCA
* * * * * * * *
12502752 GTCTAAGATCAGATCAGACCGAGGGTTACGGTAACACTTTCTGGGATCAGGCATGTGCTGGTGCC
450 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCC
* * * * * *
12502817 GCATATTTCTTCGTCGAGGCACTATCGCCAGAGCATCGTCGGAGAACCTAACCGGCGGCATTGGG
515 ACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* ** * *
12502882 GTTCCGACGATCCGGCAGGCCGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGAC
580 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
12502947 TCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
645 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
12503012 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTGT-AAATG
710 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT-TCAAATG
*
12503076 GTCACTAAATCTTGTACACTTCGAGTTTTTTA-CTGAATTTTTTTGTGCATGCCAACAAAAATAC
774 GTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* *
12503140 AAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAACTCCTG
838 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTG
*
12503202 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACG
1 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * **
12503267 TAAAGGCTTAAGGGACCATTGTATGAATTTACTAGCCATAAAAATGATATTGGCATGCAGAAATA
66 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
12503332 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCCTGCGCATCCCGTCTCCCTGG
131 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
12503397 CCGGCGTAGTGCCCGCCCGGTCGCCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATATGGAGTT
196 CCGGCGTAGTGCCCGCCC--CCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
** * *
12503462 CATTCCCAGTCTAAGATTGGACCTGACTGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGAGGG
259 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * *
12503527 GGACCCGATCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCAGATGAGCGCCCGCACGCTCGT
324 GGACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
12503592 TTCGTGGGTTGACTTAGGCATAC--G----------G----AG--T----G--CATTCCTAGTCT
389 TTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACAAGTTCATTCCCAGTCT
** *
12503633 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTAGTGCCACAT
454 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACAT
* * * ** *
12503698 TTTTCTTCGGCGGGGCACCATCGCCGGAGCATCAT-GGAGAACGTGACTAGTGGCATTGGGGTTC
519 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
** *
12503762 CGGTGATC-GGGGGGCCGGGGGGGCGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGC
584 CGACGATCGGGGGGGCC---GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * **
12503826 CCTTATATTAGCCCCCTATCCCTCATCAAACCCCGAGAACTTGCACCCCCTTAAAGAGCATTTGA
645 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
12503891 GATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAATTGG
710 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
12503956 TCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAA
775 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
12504020 GGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCAGAAAAAATATTAAAAAATCTTG
840 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTG
* * *
12504080 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCCCG
1 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
12504145 TGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAAAAATA
66 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
12504210 AGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCTCGTCTCTCTGG
131 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * *
12504275 CCGACGTAGTGCCCGCTCGCCCACCCGCCTGCTCATTTTGTCGGTTGGCTTAGGCATACAGAGTT
196 CCGGCGTAGTGCCCGC-C-CCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* * * ** * * * * * *
12504340 CATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGTAGGATCGACAACACGTAGAGGA
259 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGG
** * * ** * * * * *
12504405 GGACCTAACTGATCCTCGGCTTGTGCATCCCACCTATCTGGCTGGGTTGTGCATCCCGC-CCCTT
324 GGACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGC-CGGCTGAGC-GCCCGCACGC-T
* * * * * *
12504469 TGGTTGGTTTGCGTATCCCACCCCTCT-GGCCAACTGAACGCCCGCACGCTCATTTCGTGAGCTG
386 CGTTTCG--TGGGT-T--GA---CT-TAGG-C-A-T--A----CG-A-GTTCA-TTC-----C--
*
12504533 ACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
423 -C--AGTC-TA---AG--------C-A--T-A-C--A---AGTTCATTCCCAGTCTAAGATCGGA
* * *
12504598 CCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGAGCCAAATTTTTCTTCG
463 CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCG
* * * * * **
12504663 TCGGGGCACCATCACTGGAGCATCGCCGGAGAACCTAACCGACGGCATCAGGGTTCCGACGATCG
528 TCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * * *
12504728 GGGGGGCTGGGGGAGGTGTGTGCACATGATGTGTGATGGGTGCCGGTACTTGGCCCTTATATTGG
593 GGGGGGC-CGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
12504793 CCCCCTGTCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
656 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
12504858 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
721 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
12504923 TGTACACTTCAAGTTTTTAGCTGAATTTTATTGTGCATGCCAACAAAAAATACAAGGACCACATC
786 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTC
* * *
12504988 TACTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-TTG
850 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTG
* * * * *
12505037 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCATG
1 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
12505102 TGAAGACTTAAGGTACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAGAAATA
66 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
12505167 TGAAGATATGCCTAAACCCACCTACCA-TCAATCGATCCATGGCTTGCGCATCCCGTCTCTCTGG
131 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * * * *
12505231 TTGGCATAGTGCCCGCCCGCCTGCCAGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
196 CCGGCGTAGTGCCCGCCC-CC-GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* * * ** * * * * *
12505296 TATTCCCAATCTAAGATCGGACTGGA-TCGAGGGTTGCGAG-AGCAGGATCGGCACCATGCAAAA
259 CATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGTG-GCAGCAGGATCGGCAGCACGCAGAG
* * * * * * * * *
12505359 GGGGACCTGGCCGATCCCCGGCTTGCACA-CCCTGCCCCTTTGGCCAGCTGAGCGCCCGTACTCT
322 GGGGACCCGACCGATCCTCGGCTTGCGCATCCC-ACCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
12505423 CATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T--G--T--AAG---------A
386 CGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACAAGTTCATTCCCA
* ** * *
12505471 -TC----A---GACCGGACCGAGGGTTATGGTAGCACATGCTGGGCTCGGGCA-GTG-TGGGTGC
450 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCT-GGTGC
** ** * * * * *
12505526 CGTATTTTTCTTTATTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAGCAGCAGCATTGG
514 CACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * *
12505591 GGTTCCGATGATCGGGGGGGCCGAGGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTT
579 GGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
12505656 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
642 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
* * *
12505721 TGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAATGTCTGAAAT
707 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12505768 TTCATACAAT
Statistics
Matches: 3715, Mismatches: 486, Indels: 329
0.82 0.11 0.07
Matches are distributed among these distances:
875 6 0.00
876 31 0.01
877 308 0.08
878 430 0.12
879 213 0.06
880 11 0.00
881 1 0.00
882 4 0.00
883 4 0.00
884 68 0.02
885 80 0.02
886 118 0.03
887 218 0.06
888 12 0.00
889 252 0.07
890 27 0.01
891 12 0.00
892 2 0.00
893 1 0.00
895 2 0.00
896 181 0.05
897 3 0.00
898 10 0.00
899 23 0.01
900 339 0.09
901 10 0.00
902 18 0.00
903 303 0.08
904 142 0.04
905 108 0.03
906 10 0.00
917 1 0.00
922 2 0.00
925 2 0.00
927 1 0.00
930 3 0.00
935 3 0.00
936 4 0.00
937 3 0.00
941 1 0.00
943 2 0.00
944 1 0.00
945 2 0.00
946 4 0.00
949 1 0.00
951 1 0.00
952 4 0.00
954 9 0.00
955 13 0.00
956 468 0.13
957 176 0.05
958 67 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGG
ACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACAAGTTCATTCCCAGTCTAA
GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTT
TTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
ACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTG
Found at i:12504575 original size:26 final size:26
Alignment explanation
Indices: 12504539--12504591 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12504529 GCTGACTTAG
12504539 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12504565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12504591 G
1 G
12504592 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12507236 original size:26 final size:26
Alignment explanation
Indices: 12507185--12507237 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12507175 CCAATCTGAT
* * *
12507185 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
12507211 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
12507237 C
1 C
12507238 ATAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:12508935 original size:14 final size:14
Alignment explanation
Indices: 12508916--12508952 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
12508906 CAACGATGCT
*
12508916 CCGACGATGGTGCC
1 CCGACGAAGGTGCC
12508930 CCGACGAAGGTGCC
1 CCGACGAAGGTGCC
12508944 CCGACGAAG
1 CCGACGAAG
12508953 AAAAATACGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.22, C:0.35, G:0.35, T:0.08
Consensus pattern (14 bp):
CCGACGAAGGTGCC
Found at i:12509734 original size:26 final size:26
Alignment explanation
Indices: 12509683--12509735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12509673 CCGGTCCGAT
*
12509683 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
*
12509709 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
12509735 C
1 C
12509736 CTAACAACCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:12510430 original size:26 final size:26
Alignment explanation
Indices: 12510391--12510443 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12510381 TCGATCTGAT
*
12510391 CTTAGACTGTGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
12510417 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
12510443 C
1 C
12510444 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:12511332 original size:26 final size:26
Alignment explanation
Indices: 12511296--12511346 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12511286 GGTTTGATCA
*
12511296 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
12511322 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
12511347 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:12511557 original size:903 final size:902
Alignment explanation
Indices: 12509806--12513118 Score: 4512
Period size: 903 Copynumber: 3.7 Consensus size: 902
12509796 TTGCGCAAGC
*** * * *
12509806 CACATCTTCATATTTCTATGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGATCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
12509871 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* *
12509936 TTTTACGGTTTGAGATTTTTTAAAATTTTTTTGGAA--AATGTTTTGGCCCCAAACTTGGTAGAC
131 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAA--TTTTGGCCCCAAACTTGGTAGAC
* *
12509999 GTGATCCTTGTATTTTTTTTTGGCATGCAC-AAAATAATTCAGCTAAAAACTCAAAGTGTACAAG
194 GTGATCCTTGTATTTTTTGTTGGCATGCACAAAAAT-ATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
12510063 ATTTTATGACCTTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC
258 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
12510128 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
323 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* * * * *** *
12510193 AATATAAGGGCCAAGTACCCGTACCCTTCGCACATGATGTGCGCACACCCCCCCGGTTGCCCGAA
388 AATATAAGGGCCAAGTA-CCATACCCATCGCACATCATGTGCGCACA-CCCCCTGGCCCCCCGAT
** * * * * *
12510258 CGCCGGAACCCAAATGTCACCGGTTAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCTG-CAA
451 CATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC-GACAA
** * * *
12510322 AGAAAAATGC-AGCACCAGCACATGCCCGAGCAAAGCTTGTGCTGCCCGCAACCCTCGGTTCGAT
515 AGAAAAATGCGAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CCGCAACCCTCGGTCCGGT
* * * *
12510386 CTGATCTTAGACTGTGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTT
579 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * ** * *
12510451 AACCCACGAAACGAGCGTGCGGGCGCTTAGCTGGCCAGAGGGGCAGGATGCCCAAGCCGGGGATT
644 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATC
* ** ** * * **
12510516 TACCGACTCCCCCTCTGCGTGCTGTTGATCCTGCTACCGTAACCCTCAATCCAGTCTGATCTTAG
709 GACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAG
* ** * * *
12510581 ACTGGGAATGAACTCTGTATGCCTAAGCCAACCGTTGAAACGAGCAGGCGGGCGGGCGAGCGACC
774 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGCG-GC
* * * * * *
12510646 ATTACGCCGGCCAGAGATACGGGATGTGCAAGTCGCGGATCGATAGGGTTGTAGGTGGGTTTAGG
838 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
12510711 CACATCTTCATATTTCTGCATGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
12510776 TAAGCCTTCACGTGAAATTTCATGGCAGGACGACTCCTTTTCTATTTTTCACTATTTTTGAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * * *
12510841 TTTTACGATTCAAGATTTTTTAAAATTTTTTCGTAAGGAATTTTGGCCTCAAACTTGGTAGACTT
131 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGT
* * * * *
12510906 GATCCTGGTA-TTTTTGTTGGTAGGCA-AAAAATAGTCAGCTAAAAACTTGAAGTGTACAAGATT
196 GATCCTTGTATTTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
12510969 TTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGT
261 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
**
12511034 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
326 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
12511099 ATAAGGGCCAAGTACCATCACCCATCGCACATCATGTGCGCACACCCTCCTGGCCCCCCCGATCA
391 ATAAGGGCCAAGTACCAT-ACCCATCGCACATCATGTGCGCACACCC-CCTGG-CCCCCCGATCA
* * * * * * *** ***
12511164 TCAGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGCTGCTCCGGTGATGGCAACCCGGTGAAGA
453 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGA
* * * **
12511229 AAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCTGGTTTGA
518 AAAATGCGAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* *
12511293 TCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
583 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * ** **
12511358 CATGAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGTGCAAGCCTAGGATCGGTC
648 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACC
* * * * * *
12511423 GGGTCCCCCACTGCGTGTTGCCGATCCTACTGTCGTAACCCTCAGTCTGGTCTGACCTTAGGCTG
713 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTG
* * * *
12511488 GGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACAAGTGGGTGGGCGGGCGCGCAGGCACTA
778 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGC-GGCACTA
* * *
12511553 CGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGG
842 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
12511614 CACATCTTCATATTTCTGCATGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCCT
*
12511679 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * * * *
12511744 TTTTGCGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAATCTTGGTAGCCGT
131 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGT
* *
12511809 GATCCTTGT-TTTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTTCG-AGTGTACAATAT
196 GATCCTTGTATTTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAAC-TCGAAGTGTACAAGAT
* *
12511872 TTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
12511937 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
12512001 TATAAGGGCCAAGTACCAGTAGCCATCGTACATCATGTGCGTACACTCCCTGGTCCCCCGATCAT
390 TATAAGGGCCAAGTACCA-TACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCAT
* * * *
12512066 CGGAACCCCAATGCCGTCGGTCAGGTTCTCTGATGATGCTCCGGTGATGGTGCCCCGACAAAGAA
454 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGAA
* * *
12512131 AAATACGA-CACTAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
519 AAATGCGAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* *
12512195 CTTAGA-TAGGGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
584 CTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
12512259 CACGAAACGAGCGTACAGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGACC
648 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACC
* * * * * *
12512324 GGGTCCCCCTCTGCGTCCTACCGATCCCGCTGCCGTAACCCTC-GATCTGGGTC-AATGTTAAAC
713 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCAG-TCT-GGTCTGATCTTAGAC
* *
12512387 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACAGGC-GG-GCG-GGCACT
776 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGCGGCACT
* *
12512449 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
841 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** * ** *
12512511 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATATCTTCTAAATTCATACAATGGTCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
12512576 TAAGCCTTCATGTGAAGTTACATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * *
12512641 TTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCCCCAAACTTGGTAGACGT
131 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGT
* *
12512706 GATCCTCG-ATTTTTTGTTGGCATGCACAAAACA-ATTAAGCTAAAAACTCGAAGTGTACAAGAT
196 GATCCTTGTATTTTTTGTTGGCATGCACAAAA-ATATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
12512769 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAACAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
12512834 TAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* * * * * *
12512899 CATAAGGGCCAAGAACCA-GCACCTTCACACATCATGTGCGCACACCCCCTGGCCCCCCCTATCA
390 TATAAGGGCCAAGTACCATAC-CCATCGCACATCATGTGCGCACACCCCCTGG-CCCCCCGATCA
* * * * * *
12512963 TC-GAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTACGACGATGGTGCCCCAACGAAGA
453 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGA
* * * *
12513027 AAAATG-TAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCCA
518 AAAATGCGAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
12513091 TCTTAGACTGGGAATGAACTCCGTATGC
583 TCTTAGACTGGGAATGAACTCCGTATGC
12513119 CTAAGTCAAC
Statistics
Matches: 2118, Mismatches: 266, Indels: 56
0.87 0.11 0.02
Matches are distributed among these distances:
896 4 0.00
897 572 0.27
898 32 0.02
899 3 0.00
900 4 0.00
901 322 0.15
902 15 0.01
903 722 0.34
904 258 0.12
905 184 0.09
907 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (902 bp):
CACATCTTCATATTTCTGCATGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCATACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCATCG
GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGAAAA
ATGCGAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGG
TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGCGCGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
Found at i:12513821 original size:26 final size:26
Alignment explanation
Indices: 12513785--12513837 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12513775 CCAGTTTGAT
*
12513785 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
12513811 CTTAGACTGGGAATGAACATCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
12513837 C
1 C
12513838 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCGTATG
Found at i:12516175 original size:26 final size:26
Alignment explanation
Indices: 12516146--12516198 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12516136 GTTGACTTAG
* *
12516146 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGCCTAA
12516172 GCATACGGAGTTCATTACCAGCCTAA
1 GCATACGGAGTTCATTACCAGCCTAA
12516198 G
1 G
12516199 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGCCTAA
Found at i:12517956 original size:26 final size:26
Alignment explanation
Indices: 12517927--12517979 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12517917 GTTGACTTAG
12517927 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12517953 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12517979 G
1 G
12517980 ATTGGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12518822 original size:907 final size:899
Alignment explanation
Indices: 12515472--12519781 Score: 5886
Period size: 905 Copynumber: 4.8 Consensus size: 899
12515462 TGCCGTCGGA
* *
12515472 GCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
12515536 AAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
66 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
12515601 TTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCC
131 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * * *
12515666 AAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTTAA
196 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAA
* * * ** * *
12515731 AAATCTCGAACCGTAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAA
261 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
12515796 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
326 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
12515861 TAGAAATATGAAGATGTGCCTAAACCCACCGACCACTCTATCGATCTACGGCTTTCGCATCCCGT
391 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
12515926 CTCTCTAGCCGGCGTAGTGCCCGTCCGCCCGTCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
456 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
12515991 ACGGAGTTCATTCCCAGTCTAACATCAGATCAGACCGAGGGTGGCGGTAGCAGGATCGGCAGCAT
520 ACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAT
* * *
12516056 GCAGAGGGGGACCCGACCGAT-CCCTGCGTCGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCG
585 GTAGAGGGGGACCCGACCGATCCCCGGC-TTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCG
* * *
12516120 CATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
649 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
* ** * * * * * *
12516185 ATTACCAGCCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCTTGTGT
714 ATTCCCAATCTAAGATCGGA-CGAACTGAGGGTAGCGGCAGCACATGCTGGGCTCGGGCATGTGT
** * ** * * ** *
12516250 TGGTACCGCACTTTTCTTCGCCATGGCACCGTCG-CTGGAGCATAATCGGAGAACCTGACCGACG
778 TGGTGTCGCATTTTTCTTCGCCGGGGCA-CATCGTC-AGAGCATCGTCGGAGAACCTGACCGGCG
* * * * *
12516314 GTATTGGGGTTCCGGCGATCGAGGGGGTCGGGGGGGGCTGTACGCACATGTTGTGCGATGGGT
841 GCATTGAGGTTCCGACGATCG-GGGGGTC--GGGGGG-TGTGCGCACATGATGTGCGATGGGT
* * *
12516377 GCTAGTACTTGGCCCTTATATTGG-CCCCTGTCCATCATCAAACCTCGAGAACTCACACCCCCTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
12516441 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
66 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
12516506 TTTTTTCAAATGGTCATAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
131 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* ** * * *
12516571 AACAAAAATACATGGATCACATCTACCAAGTTTGGGGTAAAAAATCCTTCTGAAAAAATTTTAAA
196 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAA
* * * *
12516636 AAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTACCATGAA
261 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * **
12516701 ACTTCTCGTGAAGACTTAAGGGACCATTGCATGAATTTACAAGTGATAAAAATGGCATTGGCACG
326 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
12516766 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGT
391 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
12516831 CTCTCTGGCCGACATAGTGCCCGCCCGCCCGCTCGCCCGCTAGTTTCATCGGTTGGCTTAGGCAT
456 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * *
12516896 ACGGAGTTCATTCCCAGGCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATTGGCAGCAC
520 ACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAT
* * *
12516961 GCAGAGGGGGACCCGACCGATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
585 GTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGC
* ** * *
12517026 AAGCTTATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAG-AT-CG--G----
650 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* * *
12517083 ------A-C------C-G--G-ACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGACATGTGTTG
715 TTCCCAATCTAAGATCGGACGAACTGAGGGTAGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * * *
12517131 GTGCCGCATTTTTCTTCACCGGGGCACCATCGTCAGAGCACCGCCGGAGAACTTGACCGGCGGCA
780 GTGTCGCATTTTTCTTCGCCGGGGCA-CATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCA
12517196 TTGAGGTTCCGACGATCTGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
844 TTGAGGTTCCGACGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
12517253 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
12517318 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
66 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
12517383 TTTTTTCAAATGGTCACAAAATCTTGTACGCTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
131 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* ** *
12517448 AA-AAAAATACAGGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAA
196 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAA
** *
12517512 AAATCTGGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
261 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
12517577 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
326 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
12517642 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTTCGCATCCCGT
391 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* ** * *
12517707 CTCTCTAGCCGGGGTAGTGCCCGTCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
456 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
12517772 ACGGAGTTCATTCCCAGTCTAACATCAGATCAGACCGAGGGTGGCGGTAGCAGGATCGGCAGCAT
520 ACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAT
* * *
12517837 GCAGAGGGGGACCCGACCGAT-CCCTGCGTCGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCG
585 GTAGAGGGGGACCCGACCGATCCCCGGC-TTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCG
* * *
12517901 CATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
649 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
* * * ** * * * *
12517966 ATTCCCAGTCTAAGATTGGATCGAACCGAGGGTAGCGGCATTACAGGCTGGGATCGGGCGTTTGT
714 ATTCCCAATCTAAGATCGGA-CGAACTGAGGGTAGCGGCAGCACATGCTGGGCTCGGGCATGTGT
* * * *
12518031 TGGTGTAGCATTTTTCTTCGTCGGGGCAACATCGTCAGAGCATCGTTGGAGAACCTGACCGACGG
778 TGGTGTCGCATTTTTCTTCGCCGGGGC-ACATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGG
* * * * *
12518096 CATTGGGGTTTCGATGATCGGGGGGTCGGGGGGTGGGTGTGCAAACATGATGTGCAATGGGT
842 CATTGAGGTTCCGACGATCGGGGGGTCGGGGGGT--GTGCGC--ACATGATGTGCGATGGGT
12518158 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
12518223 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGACAC
66 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
12518288 TTTTTTCAAATGGTCATAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
131 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* ** * * *
12518353 AACAAAAATACATGGATCACATCTACCAAGTTTGGGGTAAAAAATCCTTCTGAAAAAATTTTAAA
196 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAA
* * * *
12518418 AAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCCTACCATGA
261 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT-CTTGCCATGA
* * * **
12518483 AACTTCTCGTGAAGACTTAAGGGACCATTGCATGAATTTACAAGTGATAAAAATGGCATTGGCAC
325 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
12518548 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCG
390 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
12518613 TCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCTCGCCCGCTAGTTTCATCGGTTGGCTTAGGCA
455 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* *
12518678 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCA
519 TACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
* * ** * *
12518743 TGTAAAGGGGGACCCGATCGATCCCCGGCTTAAGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCG
584 TGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCG
* * * * *
12518808 TACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTC
649 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
* *
12518873 ATTCCCAATCTAAGATCGGACTAGACTAAGGGTTA-CGGCAGCACATGCTGGGCTCGGGCATGTG
714 ATTCCCAATCTAAGATCGGACGA-ACTGAGGG-TAGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * *
12518937 TTGGTGTCGTATTTTTGTTCGCCGGGG--CA----C----CATCGTCGGAGAACCTGACCGGTGG
777 TTGGTGTCGCATTTTTCTTCGCCGGGGCACATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGG
* *
12518992 CATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCCCATGATGTGCGATGGGT
842 CATTGAGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
12519050 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGACCTCACACCCCCTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
12519115 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACAC
66 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
12519180 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTC-AGTTTTTAGCTGAATTTTTTTGTGCATAC
131 TTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
12519244 GAACAAAAATACAAGGATCACTTCTACCAAGTTTTGGACCAAAACTTCTTCCGAAAAACTTTTAA
195 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAA
* ** * ** *
12519309 AAAATCCCGAACCGTAAAAAGTTTCAAAAATTTTTAAATGTAGAAAACGAGTCGTCTTGTCATGA
260 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
12519374 AACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
325 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
12519439 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
390 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
12519504 TCTCTCTGGCC-AGCGTGGTACCCGCCCGTCGGCCTG-TCGCTCGTTTCGTCAGTTGGCTTAGGC
455 TCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
12519567 ATACGGAGTTCATTCCCAATCTAAGATC-GAACTGCACCGAGGGTTGTGGCAGCAGGATCGACAG
518 ATACGGAGTTCATTCCCAGTCTAAGATCAGAACAG-ACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * * * *
12519631 TACGTAGAGGGGGAACCGGCCGATCCTCGGCGTGCGGATCCCGCCCCTCTGGCCTATTGAGCACC
582 CATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACC
*
12519696 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGT
647 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGT
* *
12519761 TCATTCCCAGTTTAAGATCGG
712 TCATTCCCAATCTAAGATCGG
12519782 GGGACAGGGT
Statistics
Matches: 3021, Mismatches: 336, Indels: 111
0.87 0.10 0.03
Matches are distributed among these distances:
875 5 0.00
876 492 0.16
877 174 0.06
878 2 0.00
879 108 0.04
880 4 0.00
883 1 0.00
884 1 0.00
889 4 0.00
890 208 0.07
891 156 0.05
892 300 0.10
893 3 0.00
894 5 0.00
896 52 0.02
898 1 0.00
900 1 0.00
901 17 0.01
902 101 0.03
903 8 0.00
904 5 0.00
905 834 0.28
906 110 0.04
907 422 0.14
908 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAA
AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCGGCAGCAGGATCGACAGCATG
TAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
TCCCAATCTAAGATCGGACGAACTGAGGGTAGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGG
TGTCGCATTTTTCTTCGCCGGGGCACATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATT
GAGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
Found at i:12518870 original size:26 final size:26
Alignment explanation
Indices: 12518834--12518886 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12518824 GTTGACTTAG
12518834 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
12518860 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12518886 G
1 G
12518887 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12519754 original size:26 final size:26
Alignment explanation
Indices: 12519724--12519776 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12519714 GTTGACTTAG
*
12519724 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12519750 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12519776 G
1 G
12519777 ATCGGGGGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12520222 original size:26 final size:26
Alignment explanation
Indices: 12520185--12520237 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12520175 GTTCACTTAG
*
12520185 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12520211 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12520237 G
1 G
12520238 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12522017 original size:26 final size:26
Alignment explanation
Indices: 12521979--12522031 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12521969 GTTGACTTAG
**
12521979 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12522005 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12522031 G
1 G
12522032 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12524639 original size:26 final size:26
Alignment explanation
Indices: 12524603--12524655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12524593 GTTGACTTAG
12524603 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12524629 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12524655 G
1 G
12524656 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12525400 original size:45 final size:45
Alignment explanation
Indices: 12525333--12525423 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
12525323 CCGAGGGTTG
* *
12525333 CGGCAGCACATGCTGGGTTCGAGCATGTGTTGGTGCCGTATTTTT
1 CGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTT
*
12525378 CGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTT
1 CGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTT
12525423 C
1 C
12525424 TTCATCGGGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.13, C:0.22, G:0.33, T:0.32
Consensus pattern (45 bp):
CGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTT
Found at i:12525853 original size:26 final size:26
Alignment explanation
Indices: 12525817--12525869 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12525807 GTTCACTTAG
12525817 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
*
12525843 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
12525869 G
1 G
12525870 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:12529264 original size:26 final size:26
Alignment explanation
Indices: 12529228--12529280 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12529218 GTTGACTTAG
12529228 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12529254 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12529280 G
1 G
12529281 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12532255 original size:424 final size:417
Alignment explanation
Indices: 12531463--12532299 Score: 1034
Period size: 424 Copynumber: 2.0 Consensus size: 417
12531453 TTCAAAAATT
** * * *
12531463 GTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACCTCATGTGGAGGCTTAAGTGACCATTGTA
1 GTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTA
*
12531528 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
66 TGAATTTACAAGCCAT---AA--GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCT
* ** *
12531593 ACCCTCTATCGATCCGCGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGC
126 ACCCTCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCAC
* *
12531658 TCATTTCGTCCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCGAAGATCAGATCAGATCGAAC
191 TCATTTCGTCCGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCGAAGATCAGACCAGATCGAAC
**** * * * * *
12531723 GTTGTGGTAGCAAGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCA
256 GTTGCAACAGCAAGATAGATAGCACGCAAAGGGGGACCCGACCAATCCCCGACTTGCGAATCCCA
* * * **
12531788 CCCCTCTGGCCAGCTAAGCGCCCGTACGCTCTTTTTGTGGGTTGACTTAGGCATACAAAATTCAT
321 CCCCTCTGGCCAGCTAAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAAAATTCAT
*
12531853 TCCCAGTCTAAGCATACGGAGTTTTGAAGATC
386 TCCCAGTCTAAGCATACAGAGTTTTGAAGATC
* *
12531885 GTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTA
1 GTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTA
*
12531950 TGAATTTACAAGCCAT-A-CATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
66 TGAATTTACAAGCCATAAGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACC-C
**
12532013 -CGTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTTGGCGTAGTGCCCGCCCGCCCGTCCG
130 TC-TATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG-CC-T--G
* * * * * * *
12532077 CCCACTCGTTTCGTCGGTTGGCTTAGGCGTATGAAGTTCATTCCCAGTCTAAGATCGGACCGGAT
186 CCCACTCATTTCGTCCGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCGAAGATCAGACCAGAT
** * *
12532142 CGAGGGTTGCAACAGCAGGATTAG-TAGCACGCAAAGGGGGACCCGATCAATCCCCGACTTGCGA
251 CGAACGTTGCAACAGCAAGA-TAGATAGCACGCAAAGGGGGACCCGACCAATCCCCGACTTGCGA
* * * * * * **
12532206 ATCCCGCCCCTCTGGTCGGTTGAGCTCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGA
315 ATCCCACCCCTCTGGCCAGCTAAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAAA
*
12532271 GTTCATTCCCAGTCTAAGCATACAGAGTT
380 ATTCATTCCCAGTCTAAGCATACAGAGTT
12532300 CATTCCCAGT
Statistics
Matches: 352, Mismatches: 52, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
415 43 0.12
416 41 0.12
418 1 0.00
420 5 0.01
421 2 0.01
422 75 0.21
424 183 0.52
425 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (417 bp):
GTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCCT
CTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCACTCATT
TCGTCCGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCGAAGATCAGACCAGATCGAACGTTGC
AACAGCAAGATAGATAGCACGCAAAGGGGGACCCGACCAATCCCCGACTTGCGAATCCCACCCCT
CTGGCCAGCTAAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAAAATTCATTCCCA
GTCTAAGCATACAGAGTTTTGAAGATC
Found at i:12532292 original size:26 final size:26
Alignment explanation
Indices: 12532262--12532314 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12532252 GTTGACTTAG
*
12532262 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12532288 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12532314 G
1 G
12532315 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12533202 original size:29 final size:29
Alignment explanation
Indices: 12533136--12533202 Score: 107
Period size: 29 Copynumber: 2.3 Consensus size: 29
12533126 CAGATCGGAC
12533136 CAGACCGGAGTTCATTCCAAGTTTAAGAT
1 CAGACCGGAGTTCATTCCAAGTTTAAGAT
* *
12533165 CGGACCGGAGTTCATTCTAAGTTTAAGAT
1 CAGACCGGAGTTCATTCCAAGTTTAAGAT
*
12533194 CAGATCGGA
1 CAGACCGGA
12533203 CCGAGGGTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (29 bp):
CAGACCGGAGTTCATTCCAAGTTTAAGAT
Found at i:12534705 original size:900 final size:898
Alignment explanation
Indices: 12531886--12544611 Score: 13428
Period size: 902 Copynumber: 14.3 Consensus size: 898
12531876 TTGAAGATCG
* *
12531886 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
12531951 GAATTTACAAGCCAT----A---CATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * **
12532009 CCACCGTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTTGGCGTAGTGCCCGCCCGCCCGT
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGT
* * * * * *
12532074 CCGCCCACTCGTTTCGTCGGTTGGCTTAGGCGTATGAAGTTCATTCCCAGTCTAAGATCGGACCG
196 -CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
** ** * * * *
12532139 GATCGAGGGTTGCAACAGCAGGATTAGTAGCACGCAAAGGGGGACCCGATCAATCCCCGACTTGC
260 GA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGC
* * * * * *
12532204 GAATCCCGCCCCTCTGGTCGGTTGAGCTCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACG
324 GCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
12532269 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGAGCAAGGGT
388 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACGGACCGAGGGT
* * * * * * * *
12532334 TGCAGCAGTAGATGCTGGGCTTGGGCATTTGTTGGTGCCTCATTTTTCTTCATCGGGGCACCATC
452 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * *
12532399 GCCGGAGGATCGCCAGAGAACCTAACCGGCGGCCTTGGGGTTCCGACGATCGGGGGGGCCGGGAG
517 GTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GG-G
*
12532464 GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
579 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
12532529 ATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTA
644 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
12532594 GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
709 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * *
12532659 TTTTGAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGCTTAGGG
774 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
12532724 CCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCGAACTGC-AAAAGTTTCAAAAATCG
839 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * *
12532783 TGAAAAATATAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
12532848 GAATTTACAAGCCATAGAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCA-CTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * * *
12532912 CCACCTTATCGATCCACGGCTTTCGCATCCCTTCTCTCTAGTCGACTTAGTGCCCACCCG-CC--
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGT
* * * * * **
12532974 CGCCCGTTCATTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCATACTGG
196 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * *
12533039 ACTAAGGGTTGCGGTAGCAGGATTGGCAGCACACATAGGGTGACCC-AGTCGATCCCC-AGCTTG
261 AC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGA-CTTG
* * *
12533102 CGCATCCAGCCCCTCTGG-C--C--A------G-A---TCAG-ATC----G--GAC-CA-G-A-C
323 CGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATA
* * ** * *
12533141 CGGAGTTCATTCCAAGTTTAAG-ATCGGACCGGAGTTCATTCTAAGTTTAAGATCAGATCGGACC
386 CGGAGTTCATTCCCAGTCTAAGCAT---A-CGGAGTTCATTCCCAGTCTAAGATC-GAACGGACC
* * * * * * * ** *
12533205 GAGGGTTGCAGTAGCACTTGCAGGGCTCGGACATGTGTTGGTGCCGTATTTTTCTTCACCGAGGC
446 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * *
12533270 ACCAT-GCCGGAGCATCGCCAGAGAACCTGACC-AGCGGCGTTAGGGTTCTGGCGATCGGGGGGG
511 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGG
* * * * *
12533333 CCGGGGGGGTGTACGCATATGATCTGTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTA
574 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
12533398 TCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
638 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
12533463 CCAGTAGCCATCAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCAG
703 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
12533528 TTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGACAACAAAAATACAAGGATCATGTCAACCAAGT
768 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** * * * **
12533592 TTGATGCCAAAACTCCTT-CGCAAAAAATTTTCAAAAATCTCGAACCGTAAAAAGTTTTGAAAAT
833 TTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
12533656 CA
897 CA
*
12533658 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
12533723 GAATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
12533788 CCACCCTATCGATCCACGGCATGTGCATCCCGTCACTCTGGCCGGCGTAGTGCCCACCCGCCCGT
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGT
* * *
12533853 CGGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTATAAGATCAGACTA
196 C-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * *
12533918 GATCGATGGTTGCGGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGC
260 GA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGC
* * * * * * *
12533983 GCATGCCGCCCCTCTGGCCGGCTGAGCACTCACACGCTCGTTCCGTGAGTTGACTTAGGCAGATG
324 GCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
12534048 GAGTTTATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACGAGACCGAGGGT
388 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACG-GACCGAGGGT
* * * * **
12534113 TGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCACATTTTTCTTCGTCGGGGCGTCATC
452 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * *
12534178 GTCGGAGCATCACCGGAGAACCTAACCGACGGCACTGGGGTTCCGACGATCGGGGGGCCGAGGGG
517 GTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGG
* * * * * *
12534243 GTGTGCGCACATGATGTACGTTGGGTGCTGGTACATGGCCCTTATATTGGCTCCGTATCCATCAT
581 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
12534308 CAAACCTCGAGAACTCA-AACCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
646 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
12534372 CATTAAAGTGTCTGAAAT-GGGACAC-TTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTT
711 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
12534435 TTTAGCTAAATTTTTTTTTGCATCCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
776 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * ** *
12534500 AAAACTCCGTCCAAAAAAATTTTGAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCA
841 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* *
12534558 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
12534623 GAATTTACAAGCCACAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTT
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
12534688 CCACCCTATTGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTTCCCGCCCGCCTGC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-
* * * * * *
12534753 TCGCCCGCTCATTTCGTCGGTTGGCTTAAGCATACGGAGTTCACTCCAAGTCTATGATCGGACCA
195 TCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
** ** * * * ** * ** *
12534818 GACTGAGGGTTATGATAGCAAGATCAGTAGCACATAGAGGGGGACCCAACCGATCCTTGGCTTGC
260 GAC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGC
* * *
12534883 GCATCCTGCCCCTCTAGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATG
324 GCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * * *
12534948 GAGTTCATTCCCAATCTAAGCATACGAATTTCATTCTCAGACTAAGATCGGACCAGACCGAGGGT
388 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACGGACCGAGGGT
* *
12535013 TGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
452 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
** ** * * * * ** * * * *
12535078 GTCAAAGCATCGCCATAAAACCTAATCGGCGGCATTGAAGTTCTGCCAATCGAGGGGGTCGGGGG
517 GTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGG
12535143 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
581 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
** * *
12535208 CAAACCTCGAGAACTCACACCCCCTTAATCAGCATTTGAGATTTTACAAGTTTACTGCCAGTAGC
646 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
12535273 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACATT-GAAT
711 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGT
* * *
12535337 TTTTAGCTGAATTTTTTTTTGCTTGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTAGGGC
775 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
12535401 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
840 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * * * *
12535460 TGAAAAATAGAACACGAGTCATCTTCCCATGAACCTTGACGTGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* **
12535525 GAATTTACAAGCCATAGAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * *
12535590 CCACCCTATCGATCCACCGCTTACGCATCCCATCTCTCTGGCCGGCGTAGCGCCCGACGGCCCAC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-G
* ** ** **
12535655 CCGCCCGCTCGTTTCGTCGAATGGCTTAGGCATACGGAACTCATTCCCAGTCTAAGATCAGATTA
195 TCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * ** * * *
12535720 GACCGAGGGTTGTGGTAGCAGGATCAGG-AGCTTGCAGAGGGGGACCTGGCCGATCCTCGACTTG
260 GA-CGAGGGTTGCGGCAGCAGGATC-GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTG
* ** *
12535784 CGCATCCTGCCCCTCTGGCCAGCTGAGCAACCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC
323 CGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
12535849 GGAGTTCATTCCCAG--T--G--TA---A---C--T-----TC--AGA-C---CGGACCGAGGGT
387 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACGGACCGAGGGT
* * * * *
12535889 TGCGGCAGCACATACTGGGCTCAGGCATTTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATC
452 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
** * * * *
12535954 ACCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCTGGGGG
517 GTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGG
* *
12536019 GATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCATCA
581 G-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
12536084 TCAAACCTCGATAACTCACACCCCCTTAAAGAGCATTTTAGATGTTACAGGTTTGCTACCAGTAG
645 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
12536149 CCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGT
710 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
12536214 TTTTAGCTGAATTTTTTTGGGCACGCCAACAAAAATACAAGGATCACGTTTACCAAATTTGGGGT
775 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
12536279 AAAAACTCTTTTCGAAAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCA
840 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * *
12536338 TGAAAAATAGAACATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
12536403 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCCA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
12536468 CCACCCTATAGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCACAC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-C-C
* *** **
12536533 CT-GTTTGCTCGTTTCGTTTG-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
194 GTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * *
12536596 AGACCGAGGGTTGC-GTAGCAGGATCGGACAACATGCCGAGGGGGACCCGGCTGATCCCTGGCTT
259 AGA-CGAGGGTTGCGGCAGCAGGATCGG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTT
* * * * **
12536660 GTGCATCCCGCCCTTCTGGCAGGCTGAGCACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATA
322 GCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
12536725 CAGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATTC-AACCAGACCGAG
386 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGAA-CGGACCGAG
* * * *
12536789 GGTTGCGGTAGCACGTACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACC
449 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * ** * *
12536854 ATCGTCGGAGCATCGCCGGAGAACCAGACCGACGGTATTGGCCTTCGGGCGATCGGGGGGGCCGG
514 ATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGG
*
12536919 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCT
578 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
12536984 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGT
643 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
12537049 GGCCACTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGA
708 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
12537114 GTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
773 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
12537179 G-TAAAATATCCTTCC-AGAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAAT-A
838 GCCAAAA-CTCCTTCCGA-AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* *
12537239 GTGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
1 -TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * **
12537304 TGAATTTACAAGTCATCAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
65 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
12537369 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-
130 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* *
12537431 T----C-AT--TTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCTCTA-TCTAAGATCAGACC
195 TCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC-CCAGTCTAAGATCAGACC
* * * * ** * * * *
12537487 GGACTGAGGGTT-CGACAGCAAGATCAGCAGCACATAGAGGGAGACTCGGCCGATCCTCGGA-TT
259 AGAC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CCGACTT
* * * * *
12537550 ACGCATCC-CTTCCCTCTGGCCGACTGAGCGCCCACACACTCGTTTCGTTGGTTGACTTAGGCAT
322 GCGCATCCGC--CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* ** * * * *
12537614 ATGGAGTTCATTCGTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAGGATCAGACCGGACCGAA
385 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACGGACCGAG
* * * * * * *
12537679 GGTTGTGTCAGCACAAGCTAGGCTCGGGCATGTGCTGGTGTCGTAATTTTCTTCGTCGGGGCACC
449 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
12537744 A---T-----C--C-CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCTCGG
514 ATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC-CGG
* * * ** *
12537798 GGGGTATGCGCACATTATATGTAATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTAT-CCT
578 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
12537862 CATCAAACCTTGAGAGCTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGT
643 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
12537927 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGA
708 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
12537992 GTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGG
773 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* **
12538057 GCCAAAACTCCTTCCGAAAATATTTTAAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCA
838 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* *
12538118 TGAAAAATAGAAAACTAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
12538183 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATTAAGATGTGCCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
12538248 CCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTAGCCAGCATAGTGCCCGCCCG-CC--
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGT
* * *
12538310 CACCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
196 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * * *
12538375 ACTGA-GGTTGCGGCAGCGGGATCGCCAGCACGCAAAGGGGGA-CCGAAGCAATCCTCGGCTTGT
261 AC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-ACCGATCCCCGACTTGC
** * ** * *
12538438 GCATCCCGCTGCTCTGGCCGGCTAAGCGCCCATACGTTCATTTCGTGGGTTGACTTAGGCATACG
324 GCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* ** * * * *
12538503 GAGTTCATTCCCAATCTAAGCATATAGAGTCCATTCCCAGTCTAAGATTGGAGCAGACCGAGGGT
388 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGAACGGACCGAGGGT
** *
12538568 TGCGGCAGCACATGCTGGGCTCTAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
452 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * *
12538633 GCCTGATCATCACCGGAGAACCTGACCGACGGCATTGAGGTTCCGATGATCGGGGGGCCGGCGGG
517 GTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-G-GGG
** *
12538698 GGTGTGCGCACATGATGTGCGATTTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCA
580 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
12538763 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTTCAGGTTTGCTGCCAGTAG
645 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
12538828 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
710 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
12538893 TTTTAGCTAAATTTTTTTGTGAATGCCAA-AAAGAATACAAGGATCATGTCTACCAAGTTTGGGA
775 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * *
12538957 TCAAATCT-CTTCTGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAATTCA
839 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* *
12539016 TGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
12539081 GAAATTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCGCCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
12539146 CCACCCTATCGATCCATGGCTTGTGCATCACGTCTCTCTGGCCGACGTAGTG-CCGGCCGCCCG-
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGT
* * *
12539209 -G-CCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACCAG
196 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * *
12539272 ACTGAGGGTTGTGACAGCAGGATCGGCAGCATGTAGAGGGGGACCCGGCCGATTCCC-ATCTTGT
261 AC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGA-CTTGC
* * * * *
12539336 GCATCCTGCCCCTCTGGCCAGCTGAGCGCCTGCACGTTCATTTCGTGGGATGACTTAGGCATACG
324 GCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
12539401 GAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGAACCCAGGGT
388 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA-CGGACCGAGGGT
* * * *
12539466 TGTGGCAGGACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATATTTT-TTCG-CGAGGCACCGT
452 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT-TTTTCTTCGTCGGGGCACCAT
* *
12539528 CGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGCCGGGGG
516 CGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGG
12539592 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
581 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
12539657 CAAACCTCGAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAG
646 CAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
12539722 CCATTAAAGTGTCCT-AAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAG
710 CCATTAAAGTGT-CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
12539785 TTTTTAGTTGAATTTTTTTGTGCATGCCTACAAAAATACAAGGATAACGTCTAACAAGTTTGGGG
774 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
12539850 CCAAAACACCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTA
839 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * *
12539910 TTAAAAATAGAAAACGAGTTGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
12539975 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATTAAGATGTGCCTAAGCCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
12540040 CCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTTTGGCCGACGTAGT--------G-CC--
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGT
* *
12540094 CGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAG
196 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * *
12540159 ATCGAGGGTTGCGACAGCAGGATCAGTAGCACGCAGAGGGGGACCTGATCAATCCCC-AGCTTGT
261 A-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGA-CTTGC
* * * * *
12540223 TCATCCTACCCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACG
324 GCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
12540288 GAGTTCATTCCCAGTCTAAGCATAGGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCA
388 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G------------
*
12540353 ATCTAAGATCAGATCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
438 -----A-A-C-G----GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** * * * *
12540418 ATATTTTTCTTCG-CTGGGGCACCATCGCCGGAGCATCACTGGAGAACCTGATCGACGGCATTGG
491 GCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGG
* *
12540482 GGTT-CTACCGATTGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
555 GGTTCCGA-CGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
12540546 GGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGTATT
617 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
12540611 TGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
682 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
12540676 TGGTCACGAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATA
747 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * ** *
12540741 CAAGGATCACGTCTACCAACTTTAGGGTCAAAAAT-CAT--G-AAAAA-TAGAAAACGAGT--CG
812 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA--AATCCCG
* * * *
12540799 -TCTTGCCAAGAAA-CTTC----A-CG
875 AAC-CG-CAA-AAAGTTTCAAAAATCA
*** * * * * * ** *
12540819 TGAAGGCT---TAA-GGGAC--CATTG-TATG-AATTTACAAGCAAGAAAAATGGCATT--GGCA
1 TGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAACTT-C-A-C--G-TGAA-GGC-TTAAGGGA
* * * *** ** * *** ** *
12540874 -CATAGAAACATGAA--GATGTGCC-T--AAA-CCCA---CCTAC-CA-CCCTATCGATCCACG-
57 CCATTG---TATGAATTTACAAGCCATAAAAATGGCATTGGC-ACGCAGAAATAT-GA-AGATGT
* * * *** * * * ** * * *
12540926 GCTTACGCATCCCGTCTCT-CTGGCCGA-CGTAGTGCC-TGGC-CGC-CCGCCCG-CTTGTTTTG
116 GCCTA---AACCC-AC-CTACCACCCTATCG-A-T-CCACGGCTTGCGCATCCCGTC-TCTCTGG
* ** * * ** * * * * ** * * ** *
12540985 TC-G-GT--TG---GCTTAG-GCATACG-GAGTTCATTCCCAATC--TAAGATCGAACCAAACCG
172 CCGGCGTAGTGCCCGC-CCGCCCGT-CGCCCGCTCGTT-TC-GTCGGTTGGCT-TAGGCATA-CG
* * ** * *** * * *
12541039 AAGCTT--GTGACAG--TAAGATTGGCAGCACACAGA-GGGGGACCCGGTCGATCCCCA-GCTTG
231 GAG-TTCATTCCCAGTCTAAGA-T--CAG-AC-CAGACGAGGGTTGCGG-C-A---GCAGGATCG
* * **** ** * * * * ** ** *
12541098 TGCATCCCACCCCTCTGGCTAGCTGAGC-A--CCCG-C--ACGC-T-CG--TTTCATGGGTTGAC
285 -GCA--GCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCGCCCCTC-T-GGCCGGC
* * * * * * * * * **
12541153 TTAG-GCATACGGA-G-T-TTATTCCT-AGTCTAAACATACGG-AGTTC--A-TTCCCATTCTAA
345 TGAGCGC--CCGCACGCTCGT-TTCGTGGGT-T-GACTTA-GGCA-TACGGAGTT--CATTCCCA
* * * * * * *
12541209 G-CATATGGAGTTC--A-T----TCCCAGTCTAAGATTAGATCGGACCCAGGGTTAG-GGTAGCA
401 GTC-TAAGCA-TACGGAGTTCATTCCCAGTCTAAGA-TCGAACGGACCGAGGGTT-GCGGCAGCA
* * ** * *
12541265 CATGCTGGGCTCGAGCATGTGCTGGTG-CGTATTTTTCTTCACCGGGGCACCGTCG-CTGAAGCA
462 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCA
* * * ** * * *
12541328 TCACCAGAGAACCTGACCGGCCACAATGGAGTTCC-AGCGATCGGGGGGTCGGGGGGTGTGCGCA
526 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCA
* *
12541392 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCA
590 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
12541457 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGT
655 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
12541522 GTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCA
720 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
12541587 A-TTTTTTGTGCATGCCTACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCT
785 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
** * **
12541651 TTTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATTG
850 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * *
12541700 TGAAAAATAGAGAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
12541765 GAATTTACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATTAAGATGTGCCTAAGCCAACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
12541829 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTTTGGCCGGCGTAGTGCCAGCCTGCCCGC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CC-GCCCGC
* * ** *
12541894 CCGACCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAT
192 CCG-TCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * *
12541959 ACCAGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAAAGGGGGACCCGACCGATCCCCAAC
256 ACCAGA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGAC
* * * *
12542024 TTGTGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCAAGCTCGTTTCGTGGTTTGACTTAGGCA
320 TTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *
12542089 TACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGA
384 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACGGACCGA
* * * * ** *
12542154 GAGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCTC
448 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
** *
12542219 TGTCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCA------TT------A----------GG
513 CATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGG
* * *
12542262 GGGGTGTGCGCACATCATGTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCTGC
578 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CC
* * *
12542327 -CATCGAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGTTGCCAG
642 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
12542391 TATCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-
707 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* ** * *
12542455 -G-----A-C-------TTTT-T--A-GCCTACAAAAATACAAGGATCACGTCTAAAAAGTTCGA
772 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
** * *
12542502 GGAAAAAACTCCTGCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCA
837 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
*
12542564 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** *
12542629 GAATTTACAAGCCATAAAAATGGCATTGGCTGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * * * **
12542694 CTACCGTATCGATCCACGGCTTGCGCGTGCCGTCTCTCTGACCGGCATACTGCCCACCTACCCGT
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGT
* * * *
12542759 CCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCACTCTAAGATCGG
196 -CG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * * *
12542824 ATCGGACCACGGGTTGCGGCAGCAGGATCGGTAGCATGCAGTGGGGGACCCGATCGATTCCCGGC
256 ACCAGACGA-GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGAC
* * * *
12542889 TTGCGTATCCCACCCCTCTGGCCGGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCA
320 TTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * * *
12542954 TACAGAGTTCATTCTCAGTCGAAGCATACGAAGTTCATTCCCAATCTAAGATCGGATCGGACCGA
384 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACGGACCGA
* * * * **
12543019 GGGTTGCGGCAGCACATGCTGGACTCGGGCATGTGTTGGTGTCGCAATTTTCTTCACCGGGGCAC
448 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * * * *
12543084 CATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAATGATCAAGGGGGCCG
513 CATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-
*
12543149 GAGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTAT
576 G-G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
12543214 CTCTCATCAAACCTCGAGAACTCACACCCCTTTAAATAGAATTTGAGATTTTACAGGTTTGCTGC
639 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
12543279 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
704 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
12543344 TCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTT
769 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * * *
12543409 TGGGGCCAAAACTCCTTTCAAAAAAATTTAAAAAAATCCCCAACCGTAAAAAGTTTTAAAAATTA
834 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
** **
12543474 TGAAAAATAGAAAACGAGTCGTCTTGCCACAAAACTTCACGCAAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
12543539 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCAACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * ** * * * *
12543604 CCACCCTATCGATCCATGGCTTGCACATCCTATCTCTCTGGCCGACGTTGTGCCCACCCCCCCGC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-
* * * * * * *
12543669 CCGCCTGCTCGTTTCGTTGGTTGGCTTAGGCATACGAAGTTCATTCTCAGTCTAAGATCGGACCG
195 TCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * * * * ** **
12543734 GATCGAGAGTTGCTGCTGTAGGATTGGCAGCACGTAGAGGGAGACCCGATCAATCCCCGGTTTAA
260 GA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGC
*
12543799 GCATCCTGCCCCTCT----GGC----CG---GCACGCTCGTTTTGTGGGTTGACTTAGGCATACG
324 GCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
12543853 GAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G----A-A-C---CGGACCGAGGGTT
388 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACGGACCGAGGGTT
* * * * *
12543893 ACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGGACCATCG
453 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * * * *
12543958 TCGGAGCATCGTCGGAGAACCTGACCGACGGCAATGGGGTTCTGGCAATCGGGGGGGCCAGGGGG
518 TCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG
* * *
12544023 TGTGCGCACATGATGTGTGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTGATC
582 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
12544088 AAACCTCGAGAAATCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCC
647 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
12544152 ATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
712 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
12544217 TTAGCTGTA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
777 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
12544281 AAACACCTTTCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTTAAAAATCA
842 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * * * *
12544338 TGAAAAACAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGACGACTTAAGGGACCTTTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
12544403 GAATTTACAAGCCATAAAAATGGCATTGCCACGTAGAAATATGAAGATGTGCCTAAACCCACCAA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * **
12544468 CCGCCCTATCGATCCATGGATTGCACATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCCGGTCGC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-
* * * * *
12544533 TCGCACGCTCGTTTTGTCGGTTGGCATAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCG
195 TCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
12544598 GACTGAGGGTTGCG
260 GAC-GAGGGTTGCG
12544612 ACAGAACATT
Statistics
Matches: 9987, Mismatches: 1407, Indels: 903
0.81 0.11 0.07
Matches are distributed among these distances:
861 8 0.00
862 2 0.00
863 1 0.00
864 510 0.05
865 508 0.05
866 81 0.01
867 2 0.00
868 4 0.00
869 116 0.01
871 2 0.00
872 53 0.01
873 206 0.02
874 107 0.01
875 398 0.04
876 298 0.03
877 448 0.04
878 691 0.07
879 101 0.01
880 135 0.01
881 20 0.00
882 198 0.02
883 20 0.00
884 17 0.00
885 35 0.00
886 246 0.02
887 224 0.02
888 30 0.00
889 15 0.00
890 190 0.02
891 251 0.03
892 5 0.00
893 198 0.02
894 282 0.03
895 85 0.01
896 68 0.01
897 237 0.02
898 480 0.05
899 365 0.04
900 674 0.07
901 158 0.02
902 1091 0.11
903 342 0.03
904 110 0.01
905 35 0.00
906 135 0.01
907 28 0.00
908 42 0.00
909 29 0.00
910 279 0.03
911 6 0.00
912 6 0.00
913 55 0.01
914 24 0.00
915 53 0.01
916 13 0.00
917 74 0.01
918 196 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGT
CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
ACGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGC
ATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACGGACCGAGGGTTGCG
GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
Found at i:12537646 original size:26 final size:26
Alignment explanation
Indices: 12537610--12537660 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12537600 GTTGACTTAG
* *
12537610 GCATATGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12537636 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATTCCTAGTCTA
12537661 GGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12539430 original size:26 final size:26
Alignment explanation
Indices: 12539394--12539446 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12539384 GATGACTTAG
12539394 GCATACGGAGTTCATT-CTCAGTCTAA
1 GCATACGGAGTTCATTCCT-AGTCTAA
12539420 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12539446 G
1 G
12539447 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12540317 original size:26 final size:26
Alignment explanation
Indices: 12540281--12540359 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
12540271 GTTGACTTAG
12540281 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12540307 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12540333 GCATACGGAATTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12540359 G
1 G
12540360 ATCAGATCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12541235 original size:26 final size:26
Alignment explanation
Indices: 12541157--12541235 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
12541147 GTTGACTTAG
* *
12541157 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12541183 ACATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12541209 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12541235 G
1 G
12541236 ATTAGATCGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12542123 original size:26 final size:26
Alignment explanation
Indices: 12542086--12542138 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12542076 TTTGACTTAG
12542086 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12542112 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
12542138 G
1 G
12542139 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12543081 original size:865 final size:868
Alignment explanation
Indices: 12535843--12540699 Score: 3703
Period size: 898 Copynumber: 5.4 Consensus size: 868
12535833 GTTGACTTAG
* * ** * * *
12535843 GCATACGGAGTTCATTCCCAGTGTAACTTCAGACCGGACCGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * ** *
12535908 CTCAGGCATTTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
12535973 ACCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCTGGGGGGATGTGCGCACATGATGTG
131 ACCTGACCGACGGCAAT-A---T---A--A-------GG--AGGGGG-TGTGCGCACATGATGTG
* *
12536038 CGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATC-CATCATCAAACCTCGATAACTCA
177 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTC--CATCAAACCTCGAGAACTCA
* * * *
12536102 CACCCCCTTAAAGAGCATTTTAGATGTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
240 CACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12536167 TGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
305 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-------T-G-T--A-TCTTTT
* * * * ** * *
12536232 GGGCACGCCAACAAAAATACAAGGATCACGTTTACCAAATTTGGGGTAAAAACTCTTTTCGAAAA
358 -GTCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAA
* * * *
12536297 AATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAACATGAGTCATCT
422 AATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12536362 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
487 TGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
12536427 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATAGATCCACGGCTTGC
552 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *** * **
12536492 GCATCTCGTCTCTCTGGCCGGCGTAGTG-CC-CGCCCG-CACACCTGTTTGCTCGTTTCGTTTG-
617 ACATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCCCGTC-CGCCCGCCCGCTCGTTTTGTCGGT
* * *
12536553 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GTAGCAG
681 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACC-AGGGTTGCGGCAGCAG
* * * * * * *
12536617 GATCGGACAACATGCCGAGGGGGACCCG-GCTGATCCCTGGCTTGTGCATCCCGCCCTTCTGGCA
745 GATCGG-CAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGAGCATCCCGCCCCTCTGGC-
* * ** *
12536681 GGCTGAGCACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
807 CGCTGAG-GCCC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCTCAGTC-AA
* * * * * * *
12536746 GCATATGAAGTTCATTCCCAGTCTAAGATTC-AACCAGACCGAGGGTTGCGGTAGCACGTACTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGA-TCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** *
12536810 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
* ** ** *
12536875 AACCAGACCGACGGTATTGGCCTTCGGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGAC------GGCAAT------AT----AAGG--AGGGGGTGTGCGCACATGATGTG
* *
12536940 CGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
177 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTC-CATCAAACCTCGAGAACTCAC
* * * * *
12537005 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTGGCCACTAAAGTGTTTGAAAT
241 ACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12537070 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTG
306 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC------T--G-T--A-TCTTTTG
* * * * *
12537135 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-TAAAATATCCTTCCAGAAA
359 T-CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTTCAAAAA
* * *
12537199 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAAT-AGTGAAAAATAAAAAACGAGTCGTC
422 AATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTC
* * * *
12537263 CTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATCAAAATGG
486 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
12537328 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
551 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTG
* * *
12537393 CGCATCCCGTCTCTCTGGCCGGC---GT----A-----GT--GCCCGCCCGCTCATTTTGTCGGT
616 CACATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCCCGTCCGCCCGCCCGCTCGTTTTGTCGGT
* * * *
12537444 TGGCTTAGGCATACGGAGTTCATTCTCTA-TCTAAGATCAGACCGGACTGAGGGTT-CGACAGCA
681 TGGCTTAGGCATACGAAGTTCATTC-CCAGTCTAAGATCAGACCGGAC-CAGGGTTGCGGCAGCA
* * ** * * ** * * **
12537507 AGATCAGCAGCACATAGAGGGAGACTCGGCCGATCCTCGGATT-ACGCATCCCTTCCCTCTGGCC
744 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGA-GCATCCCGCCCCTCTGGCC
* * **
12537571 GACTGAGCGCCCACACACTCGTTTCGTTGGTTGACTTAGGCATATGGAGTTCATTCGT-AGTCTA
808 G-CTGAG-GCCC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC-TCAGTC-A
12537635 A
868 A
* * * * * * * * * *
12537636 GCATACGGAGTTCATTCCTAGTCTAGGATCAGACCGGACCGAAGGTTGTGTCAGCACAAGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** ** * *
12537701 CTCGGGCATGTGCTGGTGTCGTAATTTTCTTCGTCGGGGCACCATCCCCGGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAG---C--ATCGTC
** ***** * * * * **
12537766 GGCATTGGGGTTCC-GA-CGATCGGGGGGCT--CG-GGGGGTATGCGCACATTATATGTAATGGG
126 GG-A-----GAACCTGACCGA-CGGCAATATAAGGAGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
12537826 TGCTGGAACTTGGCCCTTATATTGGCCCCCTATC-CTCATCAAACCTTGAGAGCTCACACCCCCT
184 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTC-CATCAAACCTCGAGAACTCACACCCCCT
* *
12537890 TAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
248 TAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
12537955 CTTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
313 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-------T-G-T--A-TCTTTTGT-CATGC
* * * *
12538020 CAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATATTTTAA
365 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAA
* ** * *
12538085 AAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGA
430 AAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAA
* *
12538150 AATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
495 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * * *
12538215 GCAAAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCG
560 GCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCACATCCCA
* * * * * * *
12538280 TCTCTCTAGCCAGCATAGTG------CCCGCCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTAGG
625 TCTCTCTGGCCGGCGTAGTGCCCACCCCCGTCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGG
* * * * * *
12538339 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CTGAGGTTGCGGCAGCGGGATCGCCAG
690 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAG-GGTTGCGGCAGCAGGATCGGCAG
* * * * * ** *
12538403 CACGCAAAGGGGGA-CCGAAGCAATCCTCGGCTTGTGCATCCCGCTGCTCTGGCCGGCTAAGCGC
754 CACGCAGAGGGGGACCCG-ATCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCC-GCTGAG-GC
* * * * * *
12538467 CCATACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
816 CC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCTCAGTC-AA
* * * * *
12538522 GCATA-TAGAGTCCATTCCCAGTCTAAGATTGGAGCAGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
** * * * * **
12538586 GCTCTAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCTGATCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
12538651 AACCTGACCGACGGCATTGAGGTTCCGATGATCGGGGGGCCGGCGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCA---A---T---AT-A---------AGGAGGGGGTGTGCGCACATGATGT
** *
12538716 GCGATTTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGC-CTCATCAAACCTTGAGAACTC
176 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CTC-CATCAAACCTCGAGAACTC
*
12538780 ACACCCCCTTAAAGAGAATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
239 ACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12538845 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
304 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-------T-G-T--A-TCTTT
* * ** * *
12538910 TGTGAATGCCAA-AAAGAATACAAGGATCATGTCTACCAAGTTTGGGATCAAATCT-C-TTCTGA
357 TGT-CATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AA
* * * *
12538972 AAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAATTCATGAAAAATAGAAAACGAGTCG
419 AAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * * *
12539037 CCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAAATTACAAGCCATAAAAAT
484 TCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** *
12539102 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCATGGCT
549 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCT
** * * * * * *
12539167 TGTGCATCACGTCTCTCTGGCCGACGTAGTG-------CCGGCCGCCCGGCCGCTCATTTTGTCG
614 TGCACATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCCCGTCCGCCCGCCCGCTCGTTTTGTCG
* * * *
12539225 GTTGGCTTAGGCATACGGAA-TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAG
679 GTTGGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCGGAC-CAGGGTTGCGGCAG
* * ** * ** * *
12539289 CAGGATCGGCAGCATGTAGAGGGGGACCCGGCCGATTCCCATCTTGTGCATCCTGCCCCTCTGGC
742 CAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGC
* * * * *
12539354 CAGCTGAGCGCCTGCACGTTCATTTCGTGGGATGACTTAGGCATACGGAGTTCATTCTCAGTCTA
807 C-GCTGAG-GCC-CCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCTCAGTC-A
12539419 A
868 A
* * * * * * * *
12539420 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGAACCCAGGGTTGTGGCAGGACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12539485 CTCGGGCATGTGCTGGTG-CGCATATTTT-TTC-GCGAGGCACCGTCGTCGGAGCATCG-CTGGA
66 CTCGGGCATGTGCTGGTGCCGCAT-TTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTC-GGA
* * * *
12539546 GAACCTGACCGGCGGCATTGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
129 GAACCTGACCGACGGCAAT---AT---A--A------GG--AGGGGGTGTGCGCACATGATGTGC
*
12539611 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
178 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTC-CATCAAACCTCGAGAACTCACA
* *
12539676 CCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCCT-AAA
242 CCCCC-TTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAA
* *
12539740 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGTTGAATTTTTTT
305 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA---C----TTCT-G-T--A-TCTTTT
* * * * *
12539804 GTGCATGCCTACAAAAATACAAGGATAACGTCTAACAAGTTTGGGGCCAAAACACC-TTCTGAAA
358 GT-CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAA
* * * * *
12539868 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTATTAAAAATAGAAAACGAGTTGTC
421 AAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
12539933 TTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
486 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12539998 CATTGGCACGCAGAAATATTAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCATGGCTTG
551 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTG
* ** * * * *
12540063 CGCATCCTGTCTCTTTGGCCGAC---GT----A-----GT--GCCCGCCCGCTCGTTTCGTCTGT
616 CACATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCCCGTCCGCCCGCCCGCTCGTTTTGTCGGT
* * * * *
12540114 TGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAG
681 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA-CCAGGGTTGCGGCAGCAG
* * * * * ** ** *
12540179 GATCAGTAGCACGCAGAGGGGGACCTGATCAATCCCCAGCTTGTTCATCCTACCCCTCTAGCCAG
745 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCC-G
* * *
12540244 CTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
809 CTGAG-GCCC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCTCAGTC-AA
* *
12540307 GCATAGGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAATCTAAGATCAGATCAGAC
1 GCATACGAAGTTCATTCCCAGTCTAAG-AT-C-G------------------GATC-G----GAC
* ** * *
12540372 CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCTGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * * * *
12540437 CACCATCGCCGGAGCATC-ACTGGAGAACCTGATCGACGGCATTGGGGTTCTACCGATTGAGGGG
105 CACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCA----------A--TA-T-A---A
* *
12540501 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCT
152 G--GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
12540566 ATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGCT
215 ATCTC-CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCT
*
12540631 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACA
279 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
12540696 CTTC
344 CTTC
12540700 GAGTTTTTAG
Statistics
Matches: 3332, Mismatches: 452, Indels: 332
0.81 0.11 0.08
Matches are distributed among these distances:
875 3 0.00
876 5 0.00
877 3 0.00
878 385 0.12
879 65 0.02
880 1 0.00
881 7 0.00
882 1 0.00
883 1 0.00
884 2 0.00
885 9 0.00
886 257 0.08
887 210 0.06
888 4 0.00
889 5 0.00
890 204 0.06
891 62 0.02
892 6 0.00
893 180 0.05
894 268 0.08
895 9 0.00
896 39 0.01
897 75 0.02
898 449 0.13
899 199 0.06
900 5 0.00
901 13 0.00
902 439 0.13
903 129 0.04
904 2 0.00
908 2 0.00
909 6 0.00
911 3 0.00
912 1 0.00
913 46 0.01
914 8 0.00
915 40 0.01
916 2 0.00
917 53 0.02
918 129 0.04
920 1 0.00
923 2 0.00
924 1 0.00
925 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (868 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCAATATAAGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCTCCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCTGTATCTTTTGTCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
CAACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGGCGTAGTGCCCACC
CCCGTCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
ATCAGACCGGACCAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
CGGCTTGAGCATCCCGCCCCTCTGGCCGCTGAGGCCCCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACAGAGTTCATTCTCAGTCAA
Found at i:12543096 original size:865 final size:869
Alignment explanation
Indices: 12535843--12544611 Score: 6563
Period size: 865 Copynumber: 9.8 Consensus size: 869
12535833 GTTGACTTAG
* * ** * *
12535843 GCATACGGAGTTCATTCCCAGTGTAACTTCAGACCGGACCGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * * * *
12535908 CTCAGGCATTTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
12535973 ACCTGACCGACGGCATTGAGGTTCCGACGATCGGGGGGGCTGGGGGGATGTGCGCACATGATGTG
131 ACCTGACCGACGGC----A--TT-----GA--------G--GGGGGG-TGTGCGCACATGATGTG
* *
12536038 CGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGATAACTCAC
174 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC-TCATCAAACCTCGAGAACTCAC
* * *
12536103 ACCCCCTTAAAGAGCATTTTAGATGTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
238 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12536168 GGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
303 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-----TGTAGC------TTTTTG
* * * * ** * *
12536233 GGCACGCCAACAAAAATACAAGGATCACGTTTACCAAATTTGGGGTAAAAACTCTTTTCGAAAAA
357 TG-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
12536298 ATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAACATGAGTCATCTT
421 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
12536363 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
486 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12536428 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATAGATCCACGGCTTGCG
551 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *** * **
12536493 CATCTCGTCTCTCTGGCCGGCGTAGTGC-CC-GCCCG-CACACCTGTTTGCTCGTTTCGTTTG-T
616 CATC-CGTCTCTCTGGCCGGCGTACTGCACCTACCCGTC-CGCCCGCCCGCTCGTTTTGTCGGTT
*
12536554 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GTAGCAGG
679 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AGGGTTGCGGCAGCAGG
* * * * * *
12536618 ATCGGACAACATGCCGAGGGGGACCCG-GCTGA-TCCCTGGCTTGTGCATCCCGCCCTTCTGGCA
743 ATCGG-CAGCACGCAGAGGGGGACCCGATC-GATTCCC-GGCTTGTGCATCCCGCCCCTCTGGCC
* * ** *
12536681 GGCTGAGCACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
805 GGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12536746 GCATATGAAGTTCATTCCCAGTCTAAGATTC-AACCAGACCGAGGGTTGCGGTAGCACGTACTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGA-TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** *
12536810 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
* *
12536875 AACCAGACCGACGGTATTGGCCTTCGGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGAC------GGCATT-----GA--------G--GGGGGGTGTGCGCACATGATGTG
*
12536940 CGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
174 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCAC
* * * *
12537005 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTGGCCACTAAAGTGTTTGAAAT
238 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12537070 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTG
303 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC----TGT-AGC------TTTTTG
* * *
12537135 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-TAAAATATCCTTCC-AGAA
357 TG-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTCCGA-AA
* *
12537198 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAAT-AGTGAAAAATAAAAAACGAGTCGT
419 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGT
* * *
12537262 CCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATCAAAATG
483 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**
12537327 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
548 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
12537392 GCGCATCCCGTCTCTCTGGCC-G-G--C-G----TA---GT--GCCCGCCCGCTCATTTTGTCGG
613 GCGCAT-CCGTCTCTCTGGCCGGCGTACTGCACCTACCCGTCCGCCCGCCCGCTCGTTTTGTCGG
* * * *
12537443 TTGGCTTAGGCATACGGAGTTCATTCTCTA-TCTAAGATCAGACCGGACTGAGGGTT-CGACAGC
677 TTGGCTTAGGCATACGGAGTTCATTC-CCAGTCTAAGATCAGACCAGAC-CAGGGTTGCGGCAGC
* * ** * * ** * ** **
12537506 AAGATCAGCAGCACATAGAGGGAGACTCGGCCGA-TCCTCGGATTACGCATCCCTTCCCTCTGGC
740 AGGATCGGCAGCACGCAGAGGGGGACCCGATCGATTCC-CGGCTTGTGCATCCCGCCCCTCTGGC
* * * * **
12537570 CGACTGAGCGCCCACACACTCGTTTCGTTGGTTGACTTAGGCATATGGAGTTCATTCGTAGTCTA
804 CGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
12537635 A
869 A
* * * * * * * * *
12537636 GCATACGGAGTTCATTCCTAGTCTAGGATCAGACCGGACCGAAGGTTGTGTCAGCACAAGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
12537701 CTCGGGCATGTGCTGGTGTCGTAATTTTCTTCGTCGGGGCACCATCCCCGGAGAACCTGACC-GA
66 CTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGCCGGAGCATC-G-CCGGA
* * * * *** * * * * **
12537765 CG-GCATTGGGGTTCCGACGATCGGGGGGCTCGGGGGGTATGCGCACATTATATGTAATGGGTGC
129 -GAAC-CT---G-ACCGACG-GCATTGAG---GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
12537829 TGGAACTTGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTTGAGAGCTCACACCCCCTTAAA
184 TGGTACTTGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
12537894 GAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
249 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
12537959 TTTCAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAC
314 TTTCAAATGGTCACAAAATCTTGTACACTTC-----TGTAGC-----T-TTTTGTG-ATGCCAAC
* *
12538024 AAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATATTTTAAAAAA
367 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
** * *
12538089 TCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGAAATT
432 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
12538154 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAA
497 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
12538219 AAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTC
562 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTC
* * * * * * * *
12538284 TCTAGCCAGC--A-T--A-GTGCCCGCCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTAGGCATA
626 TCTGGCCGGCGTACTGCACCTACCCGTCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATA
* * * *
12538343 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CTGAGGTTGCGGCAGCGGGATCGCCAGCACG
691 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAG-GGTTGCGGCAGCAGGATCGGCAGCACG
* * * ** *
12538407 CAAAGGGGGA-CCGA-AGCAATCCTCGGCTTGTGCATCCCGCTGCTCTGGCCGGCTAAGCGCCCA
755 CAGAGGGGGACCCGATCG-ATTCC-CGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCA
* * * *
12538470 TACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
818 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12538522 GCATA-TAGAGTCCATTCCCAGTCTAAGATTGGAGCAGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
** * * * * *
12538586 GCTCTAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCTGATCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
12538651 AACCTGACCGACGGCATTGAGGTTCCGATGATCGGGGGGCCGGCGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGC----A---T----TGA----------GG-GGGGGTGTGCGCACATGATGT
** *
12538716 GCGATTTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTTGAGAACTCA
173 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCA
* *
12538781 CACCCCCTTAAAGAGAATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
237 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12538846 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
302 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-----TGTAGC------TTTTT
* ** * *
12538911 GTGAATGCCAA-AAAGAATACAAGGATCATGTCTACCAAGTTTGGGATCAAATCT-CTTCTGAAA
356 GTG-ATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
12538974 AAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAATTCATGAAAAATAGAAAACGAGTCGCC
419 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
12539039 TTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGG
484 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
12539104 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCATGGCTTG
549 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
12539169 TGCATCACGTCTCTCTGGCCGACGTA--G----T-GCCGGCCGCCCGGCCGCTCATTTTGTCGGT
614 CGCATC-CGTCTCTCTGGCCGGCGTACTGCACCTACCCGTCCGCCCGCCCGCTCGTTTTGTCGGT
* * * *
12539227 TGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAG
678 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-CAGGGTTGCGGCAGCAG
* * ** ** * *
12539292 GATCGGCAGCATGTAGAGGGGGACCCGGCCGATTCCCATCTTGTGCATCCTGCCCCTCTGGCCAG
742 GATCGGCAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGTGCATCCCGCCCCTCTGGCCGG
** * * * *
12539357 CTGAGCGCCTGCACGTTCATTTCGTGGGATGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
807 CTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
12539420 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGAACCCAGGGTTGTGGCAGGACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12539485 CTCGGGCATGTGCTGGTG-CGCATATTTT-TTC-GCGAGGCACCGTCGTCGGAGCATCGCTGGAG
66 CTCGGGCATGTGCTGGTGCCGCA-ATTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
*
12539547 AACCTGACCGGCGGCATTGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
130 AACCTGACCGACGGCA-----TT-----GA-------G--GGGGGGTGTGCGCACATGATGTGCG
12539612 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
176 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCACAC
*
12539677 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCCT-AAAT
240 CCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAAT
* **
12539741 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGTTGAATTTTTTTG
303 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA---C----TTCT-G-T--AGCTTTTTG
* * * * *
12539805 TGCATGCCTACAAAAATACAAGGATAACGTCTAACAAGTTTGGGGCCAAAACACCTTCTGAAAAA
357 TG-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
12539870 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTATTAAAAATAGAAAACGAGTTGTCTT
421 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12539935 GCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
486 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
12540000 TTGGCACGCAGAAATATTAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCATGGCTTGCG
551 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12540065 CATCCTGTCTCTTTGG-C--CG-AC-G----TA---GT--GCCCGCCCGCTCGTTTCGTCTGTTG
616 CATCC-GTCTCTCTGGCCGGCGTACTGCACCTACCCGTCCGCCCGCCCGCTCGTTTTGTCGGTTG
* * *
12540116 GCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGA
680 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCAGGGTTGCGGCAGCAGGA
* * * * * * * ** * *
12540181 TCAGTAGCACGCAGAGGGGGACCTGATCAATCCCCAGCTTGTTCATCCTACCCCTCTAGCCAGCT
744 TCGGCAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCT
* *
12540246 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
809 GAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12540307 GCATAGGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAATCTAAGATCAGATCAGAC
1 GCATACGAAGTTCATTCCCAGTCTAAG-AT-CGG------------A-C------C-G----GAC
* ** * * *
12540372 CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCTGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGG
* * *
12540437 CACCATCGCCGGAGCATCACTGGAGAACCTGATCGACGGCATTGGGGTTCTACCGATTGAGGGGG
105 CACCATCGCCGGAGCATCGCCGGAGAACCTGA-C--C-G-A---CGG------C-ATTGA-----
*
12540502 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTA
150 --GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
12540567 TCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGCTG
213 T-CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
12540632 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACAC
277 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
12540697 TTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAACT
342 TTC-----TGTAGC------TTTTTGTG-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * ** * * * *
12540762 TTAGGGTCAAAAAT-CAT--G-AAAAA-TAGAAAACGAGT--CG-TCTTGCCAAGAAA-CTTC--
395 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA--AATCCCGAAC-CG-CAA-AAAGTTTCAA
* *** * * * * * **
12540816 --A-CGTGAAGGCT---TAA-GGGAC--CATTG-TATG-AATTTACAAGCAAGAAAAATGGCATT
455 AAATCATGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAACTT-C-A-C--G-TGAA-GGC-TT
* * * * ** * *
12540870 --GGCA-CATAGAAACATGAAGATGTGCCTA-AACCCACCTACCACCCTATCG-A-T-CCACGGC
511 AAGGGACCATTG---TATG-A-AT-T---TACAAGCCA--TA--A--AAATGGCATTGGCAC-GC
** *** *** * ** * * *** ** * * * **** *
12540928 TTACGCATCCCG-TCT-CTCT-GGCCGACGTA-GTGCCTGGCCG-CCCGCCCGCTTGTTTTGTCG
560 AGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCT-ATCGATCC-ACGGCTTG-CGCATCC
* * * * ** *** ** *
12540988 GT-TGGCT-TAGGCATACGGAGTTCATTC-CCAATCTAAGAT-CGAACCAAACCG-AAGCTTGTG
621 GTCT--CTCT-GGC---CGGCGTAC-TGCACCTA-C-CCG-TCCG--CCCGCCCGCTCG-TTTTG
* * ** * * * * *** * * ** *
12541048 ACAGTAAGATTGGCAGCACACAGAGGGGGA--CCCGGTC---GATC--CCCAG--C-TTG-TGCA
673 TCGGTTGGCTTAG--GCATACGGA-GTTCATTCCCAGTCTAAGATCAGACCAGACCAGGGTTGCG
* * *** * *** * * * ** * *
12541102 TC-CCACCCCTCTGGCTAGC-TG-AGCA-CCCG-CACGCTCGTTTCATGGGTTGACTTAGGCATA
735 GCAGCA-GGATC-GGC-AGCACGCAG-AGGGGGACCCGATCGATTCCCGGCTTG---T--GCATC
* **** * * * * * *** ** * * *** * *
12541162 CGGAGTTTAT-TCCTAGTCTAAACATACGGA-GTTC-ATTC--CCATT--C-TAAGCATATGGAG
791 CCGCCCCTCTGGCC--GGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
12541219 TTCATTCCCAG--T--
854 TTCATTCCCAGTCTAA
*
12541231 -C-T---AAG---------A-T-T-AGATCGGA-C---CC-AGGGTTAG-GGTAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-GCGGCAGCACATGCTGG
* * * * * * * *
12541273 GCTCGAGCATGTGCTGGTG-CGTATTTTTCTTCACCGGGGCACCGTCGCTGAAGCATCACCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
12541337 AACCTGACCGGCCACAATGG-AGTTCCAGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACC-G--AC---GGCA-TT-----GA-------G--GGGGGGTGTGCGCACATGATGTG
* *
12541401 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCAC
174 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCAC
* *
12541466 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTTAAAT
238 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12541531 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTGT
303 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-----TGTAG--C---TTTTTGT
* * **
12541596 GCATGCCTACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAA
358 G-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * *
12541661 TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAGAACGAGTCATCTTG
422 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
12541726 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCAT
487 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
12541790 TGGCATGCAGAAATATTAAGATGTGCCTAAGCCAACCTACCACCCTATCGATCCACGGCTTGCGC
552 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
12541855 ATCCCGTCTTTTTGGCCGGCGTAGTGCCAGCCTGCCCGCCCGACCGCCCGCTCGTTTTGTCGGTT
617 AT-CCGTCTCTCTGGCCGGCGTACTG-CA-CCTACCCGTCCGCCCGCCCGCTCGTTTTGTCGGTT
** * *
12541920 GGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCATACCAGACCGAGGGTTGCGACAGCAGG
679 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AGGGTTGCGGCAGCAGG
* * * ** *
12541985 ATCGGCAGCACGCAAAGGGGGACCCGACCGATCCCCAACTTGTGCATCCCGCCCCTCTGGCCAGC
743 ATCGGCAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGC
* * * *
12542050 TGAGCGCCCGCAAGCTCGTTTCGTGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
808 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12542112 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGAGTTGCAGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
12542177 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCTCTGTCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
12542242 ACCTGACCGACGGCATT-A-GGGGGGTGTGCGCACATCATGTGCGATGGGTGCAGGTACTTGGCC
131 ACCTGACCGACGGCATTGAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
12542305 CTTATATTGGCCCCCTAT-CTGCCATCGAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGA
196 CTTATATTGGCCCCCTATCCT--CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
12542369 GATTTTACAGGTTTGTTGCCAGTATCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
259 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
12542434 TCACAAAATCTTGTACACTTC-G-A-C-TTTT-T-A-GCCTACAAAAATACAAGGATCACGTCTA
324 TCACAAAATCTTGTACACTTCTGTAGCTTTTTGTGATGCCAACAAAAATACAAGGATCACGTCTA
** * * ** * *
12542492 AAAAGTTCGAGGAAAAAACTCCTGCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCA
389 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
*
12542557 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACC
454 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** *
12542622 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTGGCAAAAATATGAAGATGTGCCTAAAC
519 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
12542687 CCACCTACTACCGTATCGATCCACGGCTTGCGCGTGCCGTCTCTCTGACCGGCATACTGCCCACC
584 CCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGGCCGGCGTACTG--CACC
* * *
12542752 TACCCGTCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCACTCTA
646 TACCCGTCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
12542817 AGATCGGATCGGACCACGGGTTGCGGCAGCAGGATCGGTAGCATGCAGTGGGGGACCCGATCGAT
711 AGATCAGACCAGACCA-GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT
* * * *
12542882 TCCCGGCTTGCGTATCCCACCCCTCTGGCCGGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGAC
775 TCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGAC
* * *
12542947 TTAGGCATACAGAGTTCATTCTCAGTCGAA
840 TTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12542977 GCATACGAAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12543042 CTCGGGCATGTGTTGGTGTCGCAATTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
*
12543107 ACCTGACCGGCGGCATTGGGGTTCCAATGATCAAGGGGGCCGGAGTGGGGTGTGCGCACATGATG
131 ACCTGACCGACGGCA-------T----TG----A-------GG-G-GGGGTGTGCGCACATGATG
*
12543172 TGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTC
172 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CTCATCAAACCTCGAGAACTC
* * *
12543237 ACACCCCTTTAAATAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
236 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
**
12543302 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTT
301 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-------T-G-T--AGCTTTT
* * *
12543367 TGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTTCAAAA
355 TGTG-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
12543432 AAATTTAAAAAAATCCCCAACCGTAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTC
419 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
** **
12543497 TTGCCACAAAACTTCACGCAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
484 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12543562 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCATGGCTTG
549 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** ** * * *
12543627 CACATCCTATCTCTCTGGCCGACGTTGTGC-CC-ACCCCCCCGCCCGCCTGCTCGTTTCGTTGGT
614 CGCATCC-GTCTCTCTGGCCGGCGTACTGCACCTACCCGTCCGCCCGCCCGCTCGTTTTGTCGGT
* * * * * * * * *
12543690 TGGCTTAGGCATACGAAGTTCATTCTCAGTCTAAGATCGGACCGGATCGAGAGTTGCTGCTGTAG
678 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCAGGGTTGCGGCAGCAG
* * * * * * ** *
12543755 GATTGGCAGCACGTAGAGGGAGACCCGATCAATCCCCGGTTTAAGCATCCTGCCCCTCTGG-C--
742 GATCGGCAGCACGCAGAGGGGGACCCGATCGATTCCCGGCTTGTGCATCCCGCCCCTCTGGCCGG
*
12543817 C---G-G----CACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
807 CTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
12543868 -C-T---AAG---------A-TC---GA----ACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
12543911 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGGACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
*
12543976 ACCTGACCGACGGCAATGGGGTTCTGGCAATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGACGGC-A------T-T-G--A-------GG---GGGGGTGTGCGCACATGATGTGC
* * *
12544041 GATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTGATCAAACCTCGAGAAATCACA
175 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCACA
*
12544106 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAATG
239 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12544170 GGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGTATTTTTTGTG
304 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-----TGTAGC-----TTTTTGTG
* * *
12544235 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCAAAAAAAT
359 -ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
12544300 TTTAAAAAATCTCGAACTGCAAAAAGTTTTAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGC
423 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
12544365 CATAAAACTTCACGTGACGACTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATT
488 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * * *
12544430 GCCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCGCCCTATCGATCCATGGATTGCACA
553 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
12544495 TCCCATCTCTCTGGCCAGCGTAGTGC-CC-GCCCGGT-CGCTCGCACGCTCGTTTTGTCGGTTGG
618 T-CCGTCTCTCTGGCCGGCGTACTGCACCTACCC-GTCCGCCCGCCCGCTCGTTTTGTCGGTTGG
* * * *
12544557 CATAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCG
681 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-CAGGGTTGCG
12544612 ACAGAACATT
Statistics
Matches: 6423, Mismatches: 1016, Indels: 893
0.77 0.12 0.11
Matches are distributed among these distances:
859 1 0.00
861 1 0.00
863 7 0.00
864 512 0.08
865 526 0.08
866 101 0.02
867 7 0.00
868 20 0.00
869 107 0.02
870 22 0.00
871 28 0.00
872 85 0.01
873 215 0.03
874 11 0.00
875 65 0.01
876 64 0.01
877 36 0.01
878 382 0.06
879 71 0.01
880 14 0.00
881 12 0.00
882 189 0.03
883 6 0.00
884 9 0.00
885 16 0.00
886 267 0.04
887 218 0.03
888 7 0.00
889 7 0.00
890 209 0.03
891 248 0.04
892 12 0.00
893 177 0.03
894 265 0.04
895 51 0.01
896 44 0.01
897 79 0.01
898 453 0.07
899 197 0.03
900 11 0.00
901 14 0.00
902 443 0.07
903 188 0.03
904 51 0.01
905 7 0.00
906 132 0.02
907 12 0.00
908 8 0.00
909 15 0.00
910 249 0.04
911 3 0.00
912 4 0.00
913 55 0.01
914 17 0.00
915 44 0.01
916 12 0.00
917 75 0.01
918 193 0.03
919 11 0.00
920 7 0.00
921 3 0.00
922 2 0.00
923 3 0.00
924 1 0.00
925 3 0.00
926 1 0.00
928 22 0.00
929 14 0.00
930 11 0.00
931 6 0.00
932 4 0.00
933 4 0.00
934 9 0.00
935 12 0.00
936 1 0.00
937 5 0.00
938 1 0.00
939 15 0.00
940 5 0.00
941 7 0.00
942 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (869 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCTGTAGCTTTTTGTGATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCGTCTCTCTGGCCGGCGTACTGCACCTACCC
GTCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCAGACCAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATTCCCGG
CTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAA
Found at i:12545462 original size:26 final size:26
Alignment explanation
Indices: 12545432--12545484 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12545422 GTTGACTTAG
*
12545432 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12545458 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12545484 G
1 G
12545485 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12546372 original size:26 final size:26
Alignment explanation
Indices: 12546332--12546387 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
12546322 TGGGTTGACT
*
12546332 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAATC
*
12546358 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGAAGTTCATTCCCAATC
12546384 TAAG
1 TAAG
12546388 ATCGGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAATC
Found at i:12547263 original size:26 final size:26
Alignment explanation
Indices: 12547233--12547285 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12547223 GTTGACTTAG
*
12547233 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12547259 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12547285 G
1 G
12547286 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12548163 original size:26 final size:26
Alignment explanation
Indices: 12548127--12548179 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12548117 GTTAACTTAG
12548127 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12548153 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12548179 G
1 G
12548180 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12549015 original size:26 final size:26
Alignment explanation
Indices: 12548979--12549039 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
12548969 GTTGACTTAG
*
12548979 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATTTGGAGTTCATTCCCAGTCTAA
12549005 GCATTTGGAGTTCATTCCCAGTCTAA
1 GCATTTGGAGTTCATTCCCAGTCTAA
12549031 G-A-TTGGAGT
1 GCATTTGGAGT
12549040 GGACCAAGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 7 0.21
25 1 0.03
26 26 0.76
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (26 bp):
GCATTTGGAGTTCATTCCCAGTCTAA
Found at i:12551653 original size:26 final size:26
Alignment explanation
Indices: 12551617--12551669 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12551607 GTTGACTTAG
12551617 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12551643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12551669 G
1 G
12551670 ATCAGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12552539 original size:26 final size:26
Alignment explanation
Indices: 12552502--12552554 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12552492 GTTGACTTAG
* *
12552502 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12552528 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12552554 G
1 G
12552555 ATCACACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Done.