Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 77 of 190
Found at i:12554303 original size:26 final size:26
Alignment explanation
Indices: 12554266--12554318 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12554256 GTTGACTTAG
* *
12554266 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12554292 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12554318 G
1 G
12554319 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12555154 original size:26 final size:27
Alignment explanation
Indices: 12555118--12555171 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
12555108 GTTGACTTAG
12555118 GCATACGGAGTTC-ATTCCCAGTCTAA
1 GCATACGGAGTTCAATTCCCAGTCTAA
12555144 GCATACGGAGTTCAATTCCCAGTCTAA
1 GCATACGGAGTTCAATTCCCAGTCTAA
12555171 G
1 G
12555172 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCAATTCCCAGTCTAA
Found at i:12556042 original size:25 final size:25
Alignment explanation
Indices: 12556007--12556057 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
12555997 GTTGACTTAG
12556007 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGT-TAA
12556033 GCATA-GGAGTTCATTCCCAGTTAA
1 GCATACGGAGTTCATTCCCAGTTAA
12556057 G
1 G
12556058 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 4 0.16
25 16 0.64
26 5 0.20
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTTAA
Found at i:12557855 original size:26 final size:26
Alignment explanation
Indices: 12557825--12557877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12557815 GTTGACTTAG
* *
12557825 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
12557851 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
12557877 G
1 G
12557878 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:12559415 original size:904 final size:898
Alignment explanation
Indices: 12554378--12566671 Score: 13425
Period size: 901 Copynumber: 13.7 Consensus size: 898
12554368 GCACAATCGC
* ** *
12554378 CGGAGAACCTGACCGACGGCATT-GGGTTCCAGGCGAT--AAGGGGCTGGCGGGGTGTGCGCACA
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCC-GGCGATCGGGGGGGCCGG-GGGGTGTGCGCACA
*
12554440 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGAG
64 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
12554505 AACTCACACCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGT
129 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
12554570 CTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCT-ATT
194 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-A
* * *
12554634 TTTTTTTGTGCAT-CAAACAAAAATACAATGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTT
258 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
12554698 CCAAAAAAA-ATTAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCGTAAAAAATAGAAAACGA
323 CCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * *
12554762 GTCCTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAA
388 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
12554827 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTA-CGATCCAC
453 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *** *
12554891 GGCTTACGCAT-CCGTCTCTCTAGCC-AGCGTAGTGCCCGCCCATTCG----CTCATTTCG-CAG
518 GGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTC-G
* * * * * *
12554949 GTTAGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGC
581 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGT
* * * * ** * * *
12555014 AGGATCGGTAGCATGCAGAGCGAGACCCGGTCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCC
646 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC
* * ** *
12555079 GGCTGAGCACCCACACGCTTGTTTCGCGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
711 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
12555144 GCATACGGAGTTCAATTCCCAGTCTAAGATCAGACCGGTTGGAGGGTTGCGACAGCACATACTGG
776 GCATACGGAGTTC-ATTCCCAGTCTAAGATCGGATCGG-ACGAGGGTTACGGCAGCACATGCTGG
* * * * * *
12555209 GCTCGGGCAT-TTCTTTGTGCCGTATTTTTCTTCGTCGGGCCACCATCGTCGGGGCATCGT
839 GCTCGGGCATGTGC-TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * * * * * **
12555269 CAGACAACCTAACCGGTGGCATTGTGGTTCTGGCGATCGGGGGGGTAGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
*
12555334 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
12555399 CTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCA--A-CCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
12555461 GAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTG
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-
* * * * *
12555526 CTTTT-TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGAGGCCAAAACTCGTTTT
260 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTC
* * *
12555590 GAAAAAAA-TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAG
324 CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
12555654 TCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
389 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
12555719 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACG
454 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * * *
12555784 GCTTGTGCATCCCATCTCTCTGGTCGGCGTAGTGCCCGTCTGCGCGCCGATCCACTCGTTTCATA
519 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-C-CCGC-CCG-CCCACTCGTTTCGTC
** ** * * *
12555849 GGTTGGCTTAGGCATAAAGAG----TTCGGA-TC--AGA-T----CGGATCGAGGGTTGCAGCAG
580 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAG
* * * * * **
12555902 CAGGATAGGCAACACGCAGAGGGGGGCCCGACCGAT-CCTCGTCTTGCGCATCCCATCCCTCTGG
645 TAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGG
* * *
12555966 CCGGCTGA-AAGCCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
709 CCGGCTGAGCA-CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * ** *
12556030 TAAGCATA-GGAGTTCATTCCCAGT-TAAGATCGGATCAGATCAAGGGTTGTGGCAGCAAATGCT
773 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CGAGGGTTACGGCAGCACATGCT
* * * * * *
12556093 GGGCTCGGCCATGTGCTAGTGCCGTATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCAT
837 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * *
12556155 TGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-CCGGGGGGTGTGCGCACAT
* *
12556220 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCGAACCTCGAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
12556285 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGAAG-CAGTTAAACTGT
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGT
* * * *
12556349 CTGAAATGGGGACAATTTTTTCAAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTTGCAGAA
194 CTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
12556414 TTTTTTTGTGCATGCGAATAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTGCTT
258 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
12556479 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACAA
323 CCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
**
12556544 GTTATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
388 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
12556609 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAATCCATCTACCACCCTAACGA-CCAC
453 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
12556673 GGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCTCCCACTCGCTTGTTTCAT
518 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACT--C--GTTTCGT
* ** *
12556738 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCA
579 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCA
* * * * * *
12556803 GTAGGATCGGCAGCATGCAGAGGGGGACCCGACTGATCCCTGTCTTACGCATACTGCCCCTCTGG
644 GTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG
* **
12556868 CCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
709 CCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* *
12556933 AAGCA-ATCGGAGTTCATTCCCAGTCTTAGATCGGATTGGATCGAGGGTTACGGCAGCACATGCT
774 AAGCATA-CGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CGAGGGTTACGGCAGCACATGCT
* * ** * *
12556997 GGGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCGTCGGGGCATACAGAGTTAAGG-G-ACCAT
837 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CCATCG-T-CGGAGCATCAT
* * * * ** ** * * ** * *
12557060 TGTATGAA-TTTACAAGC--CATAAAAATGGCATTGGCAC-ACAGAAATATGAAGATGTGCCTAA
1 CGGA-GAACCTGACCGGCGGCAT-----TGGGGTT--C-CGGC-G--AT-CG--GGGGGGCC--G
***** * * * * * * * * *
12557121 ACCCATCTAC-CACCCT-ATCGAT-CCACGGCTTGTGCATCCCGTCTCTCTGGTCGGCGTAGTGC
49 GGGGGTGTGCGCA-CATGAT-G-TGCGATGG---GTGC-T--GGT-ACT-TGG-C-CCTTA-T--
* * * * * ** * * ** * ***
12557183 CCGTCT-GCGCGCCGATCCACTCGTTTCATAGGTTG-G--CT--TA--GGCATAAAGAGTTCGGA
98 --AT-TGGC-CCCCTATCC-CTC--ATCAAACCTCGAGAACTCACACCCCCTTAAAGAG--CATT
* *** * * * * * * ** * *
12557240 TCAGATCGGATCGAGGGTTGCAGCAGCAGGATAGGCA--ACA-CG-CAG-AGGGGGGCCCGACGA
154 TGAGATTTTA-C-AGGTTTGCTGC--CA-G-TAGCCATTAAAGTGTCTGAAATGGGG-AC-AC-T
** *** ** ** * *** ***** * ** *
12557300 TTCCTCGTCTTGCG-CATC-CCATCCCTCTGGCCGGCTGAAAG-CCCGCGC-G-CTCGTTTCGTG
210 TTTTTC-AAATG-GTCA-CAAAAT--CT-TGTAC-ACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** *** * * * * *
12557360 --GGTTAACTTAGGCATACGGAGTTTATTC-CAGTCT---AAGCATCGGAGGTC---A-T--TTC
268 CATGCCAAC--AAAAATAC-AAG--GA-TCAC-GTCTACCAAG-TTTGG-GGCCAAAACTCCTTC
* * * * * * ** * * **** * * *** * *****
12557413 C------CTTGTATAAGAT--CGAACTGGACGAGGATT-ACGGGTAG-CACATGCTGGCTTGGGC
324 CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA-AAAATAGAAAACG-
* * * * *** ** ** * * * * * *
12557468 ATTTG-CTGGTGCCTTCATTTTTCTTTGTCG-AGGCACCATCGCCGGAGCATCGT-CG----GAG
387 AGTCGTCT--TGCCATGAAACTTC-ACGT-GAAGGC-TTA-AG--GGACCATTGTATGAATTTAC
*** * * * * *
12557526 AA-CC-TGACTGACGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCAACCACCCT
444 AAGCCAT-AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * ** *
12557589 ACCGATCCACAGCTTGCGCATCCCGTCTCTCTAGCCAACGTAGTGCTTGCCCG-CC-CACA-T--
508 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCG
* * * * *
12557649 TTT-GTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATGGACTGGATCAAGGGTT
573 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTT
* * * * * * *
12557713 GCAGTAGCAGGATTGGCAGCACACAGAGGGGGACCCGACCGATTCCC-GGCTTGTGCATCCCGCC
638 ACGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA-TCCCTGGCTTGCGCATCCCGCC
*
12557777 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
702 CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * * * *
12557842 CCAGTCTAAGCATAAGGAGTTCATCCCCAGTCTAAGATTGGACCAGATCAAGGGTTACGGTAGCA
767 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CGAGGGTTACGGCAGCA
** * * *
12557907 CATGCTGGGCTCGACCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGCCGGAGCAT
831 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
*
12557972 CGT
896 CAT
* * * * *
12557975 CAGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATC-GAGGGGTCGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
*
12558039 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
12558104 CTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
12558169 AAAATTGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
12558234 TTTTGTGCATGCCAACAAATATACAAGGATAATGTCTATCAAGTTTGGGGCCAAAAATCCTTCCA
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* ** * *
12558299 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAATATCGTGATAAATAGAAAACGAGTC
326 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
12558364 GTCTTGCCATGAAACTTAACGTG-AGGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
391 GTCTTGCCATGAAACTTCACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
12558428 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACGG
455 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
12558493 CTTGCGCATCCTGTCTCTCTAGTCGGCGTAGTGCCCACCCGCCCGCCCGCCCACTCGTTTCGTCG
520 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGCCCACTCGTTTCGTCG
* * *
12558558 GTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGTAGC
581 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGT
* * * * *
12558623 AGGATCGGCAGCATGTACAGGGGGACCCAACCGATCCCTGTCTTGCGCATCCCGCCCCTCTGGCC
646 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC
* * * ** * *
12558688 GGCTAAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAA
711 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12558753 GCATACGGAGTTCATTCCCACTCTAAGATCGGATTGGACGGAGGGTTACGGCAGCACATGCTGGG
776 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC-GAGGGTTACGGCAGCACATGCTGGG
* * *
12558818 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAAGCATCAC
840 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * **
12558877 CGAAGAACCTGACCGGCGGCATTAGGGTTCCAACGATCGGGGGGGCCGAGGGGGTGTGCGCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACAT
* * *
12558942 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
12559007 ACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
12559072 TGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACGTT-GAGATTTTAGCTGAAT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAAT
* * * *
12559136 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAGAACTCCTTT
259 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * ** * *
12559201 CAAAAAAATTTTAAAAAATCCCAAACGGCAAAAACTTTCAAAAATTATAAAAAATAGAAATCGAG
324 CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * * *
12559266 TCGTCTTGCCATGATAA-TTCATGTGATGGCTTAAGGGACCATTGTATGAATTTATAAACCATAA
389 TCGTCTTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* ** * * *
12559330 AAATGGGATTGGCACATAGAAATATGGAGATGTGCCTAAACCCACCTAGCACCTTATCGATCCAC
453 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
12559395 GGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGCCCACTCGTTTCGT
518 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCGCCCACTCGTTTCGT
* * * * * * *
12559460 CAGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTGGACCGAACTGAGGGTTACAGCT
579 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCA
* * ** * * * * *
12559525 GTAGGATCGACAACACATAGAGGGGGACCCGATCGAT-CCTCGGCTTGCGTATCCCACCCTTCAG
644 GTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTG
* * * * * * *
12559589 GTCGGCTGAGCTCCTGTACGCTCGTTCCATGTGTTGACTTAGGCATACGGAGTTCATTCACAGTC
708 GCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * **
12559654 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGTAGGAGGGTTACGAAAGCACATGCT
773 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACGAGGGTTACGGCAGCACATGCT
* * * * * * * **
12559719 GGGCTTGGTCATGT-ATCGATGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGTATTTT
837 GGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * *
12559781 CAGAGAATCTGACCGTCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
12559845 ATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
12559909 CTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTACCAGTAGCCAATAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
12559974 GAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACGTT-GAGATTTTAGCTGAATT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATT
* * *
12560038 TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAGAAA-TCCTTT
260 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTC
* * * * *
12560102 CAAAAAAATTTTAAAAAATCTC-AAACGTCAAAAACTTTCAAAAATTGTGAAAAATAGAAATCGA
324 CAAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * * *
12560166 GTCGTCTTGCCATGATAA-TTCATGTGATGGCTTAAGGGACCATTGTATGAATTTATAAACCATA
388 GTCGTCTTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* ** * * *
12560230 AAAATGGGATTGGCACATAGAAATATGGAGATGTGCCTAAACCCACCTAGCACCTTATCGATCCA
452 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
12560295 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGCCCGCTCGTTTCG
517 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCGCCCACTCGTTTCG
* * * * *
12560360 TCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGAACTGAGGGTTACAGC
578 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGC
* * * * ** * * * * * *
12560425 TGCAGGATCGACAACACATAGAAGGGGACCCGATCGAT-CCTCGGCTTGCGTATCCCACCCTTCA
643 AGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCT
* * * * * * *
12560489 GGTCGGCTGAGCTCCTGTACGCTCGTTCCATGTGTTGACTTAGGCATACGGAGTTCATTCACAGT
707 GGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
12560554 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGTAGGAGGGTTACGACAGCACATGC
772 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACGAGGGTTACGGCAGCACATGC
* * * * * * * **
12560619 TGGGCTTGGTCATGT-ATCGATGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGTATTTT
836 TGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * *
12560682 CAGAGAATCTGACCGTCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
12560746 ATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
12560810 CTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
12560875 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTAGCTGATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATT
* * * *
12560940 TTTTTATGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCATCC
260 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
12561005 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAACTTTCAAAAATAGTGAAAAATAGAAAACGAGT
325 AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
12561070 CGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAA
390 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
12561135 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCAACCACCCTATCGATCCACGG
455 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
12561199 CTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCAG-CCG-----T--TTT-GTCGATT
520 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-GCCCGCCCACTCGTTTCGTCGGTT
* * ** * * * *
12561255 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAATGGAATGGATCAAGGGTTGCAGCAGTAGG
584 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGTAGG
* * * * * * *
12561320 ATTGGCAGCGCACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCTCCTCTCTGGCCGAC
649 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
12561385 TGGGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCA
714 TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
12561450 TAAGGAGTTC-TTCCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGGCT
779 TACGGAGTTCATT-CCCAGTCTAAGATCGGATCGGA-CGAGGGTTACGGCAGCACATGCTGGGCT
** * * * * *
12561514 CGACCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATTGCCGGAGCATCGT
842 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* ** * *
12561571 CGGAGAACCTGACCGACGGCATTGGGGTTCTAGCGATC-GAGGGGTCGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
12561635 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
12561700 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
12561765 GAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTTAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * **
12561830 TTTTGTGCATGCCAATAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCTT
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
*
12561895 AAAAAATTTTAAAAAAT-TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
326 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
12561959 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
391 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
12562024 TGGCATTGGCAGGCAGAAATATGAGGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGC
456 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
12562089 TTGCACATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCTCCCGCCCGCTCGTTTCGTCAGTT-G
521 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
* * * * * *
12562153 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAAGGTTGCGGCAGCAGGAT
586 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGTAGGAT
* * * * * * ** * *** * * **
12562218 CGACAACACACAGAGAGGGACCC-AGTCGATCCCCGGCTTTTGCTTCCTAACCTTCTAGTTGGCT
651 CGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * ** ** *
12562282 GAGCACCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGCCTAAGCAT
715 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * *
12562347 ACAGAGTTCATTCCCAGTATAAGATCGGATTGGATCGAGGGTTACGGCAGCACATGCTGGGCTCG
780 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CGAGGGTTACGGCAGCACATGCTGGGCTCG
* ** * * *
12562412 AGCATGT-CTGGGTGCCATATTTTTCTTCATCGGGGCACCTTCGTCGGGGCATAATCGTCGGAGC
844 GGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC--GG----A--G-C--ATC
12562476 AT
897 AT
* * * ** * * **
12562478 CGCTGGAGAACCTGATCGACAGCATTATGGTTTCGGCGATC-GGGGGGCCAGGGGGAATGCGCAC
1 --C-GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCAC
* *
12562542 ATGATGTGCGATGGGTGCTGGAATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
63 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
12562607 GAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGTCAGTAGCCATTAAAGTG
128 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
12562672 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAA
193 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
12562736 TTTTTTTTTGCATGCCAACAAAAATACAAGGATCACTGTCTACCAAGTATGGGGCCAAAA-TGCC
258 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACT-CC
* * ** *
12562800 TTCCGAAAAAATTCTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
321 TTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* *
12562865 GAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGACTTTACAAGCCAT
386 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
12562930 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTG-CTAAAACCCATCTACCACCCTATCGATC
451 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATC
* ** * *
12562994 CACGGCTTGCGCGTCCCGTCTCTCTGGCCGGTGTAGTGCCTGCCCGTCTGCCCGTCCGCCCGCTC
515 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TG-CC--C-GCCCGCCCGCCCACTC
* * * * **
12563059 ATTTTGTCGGTTGGCTTAGGTATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGT
572 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGT
* * ** * * * * *
12563124 TACAGTAGTAGGATCGATAGCACACAGAGGTGGACCCGACTGAT-CCTCGGCTTGTGCATCCTGC
637 TACGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGC
* * * *
12563188 CCCTCTGGCCAGCTGAGCACCCGCACGCTCATTTCATGGTTTGACTTAGGTATACGGAGTTCATT
701 CCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* ** * * *
12563253 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTAGA-CTGGACCAAGGGTTACGGTAA
766 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGA-CGAGGGTTACGGCAG
* * * * *
12563317 CACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCATCGTCGCCGGAGC
829 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
12563382 ATCAT
894 ATCAT
* * ** * * *
12563387 CGGAGAACCTGACCGACGGCATTGGGGTTTCAACGAT--AGGGGGACAGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
12563450 ATGTGAGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
12563515 CTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTTT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
12563580 GAAATGGGGACACTGTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAA-TT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
12563644 TTTTGTGCATGCCAACAAAAATACAAGGATAATGTCTACCAAGTTTGGGGCCAAAACTCTTTTCG
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* * * *
12563709 AAAAAATTTTAAAAAATCTCGAACCGCAAAAGGTTTTCGAAAATCGTGAAAAATAGAAAACGAGT
326 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
12563774 CGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
390 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
12563839 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
455 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * *
12563904 CTTGCGCATCCTGTCTCTCTGGTTGACATAGTGCCCGCCCGCCCG----CTCATTTCGTCGGTTG
520 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTG
** * * * * *
12563965 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGTAGTTGGA
585 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGTAGGA
** ** * * * * * *
12564030 TCGATAGCACATAGAGGGGGACCTGACTGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCAGCT
650 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
12564095 GAGCACTCGCATGCTCATTTCATGGTTTGACTTATGTATACGGAGTTCATTCCCAGTCTAAGCAT
715 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
12564160 ACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAACACATGCTAGGCTCG
780 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CGAGGGTTACGGCAGCACATGCTGGGCTCG
* * * * * * *
12564225 GGCATGTGTTGGTGCCGTATTTTTCTTCGCCGGGGCATCATTGCCGGAGCATCGT
844 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * *
12564280 CGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGG-CAGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
*
12564343 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
12564408 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
12564473 GAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTTGCTGAA-TT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
12564537 TTTTGTGCATGCCAACAAAAATACAAGGATAATGTCTACTAAGTTTGGGGCCAAAACTCCTTTCG
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* *
12564602 AAAAAATTTTAAAAAAT-------C----------TCGAAAATCGTAAAAAATAGAAAACGAGTC
326 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
12564650 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
391 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
12564715 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
456 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
12564780 TTGCGCATCCCATCTCTCTGGTCGGCGTAGT----GCCCGCCCGCCCACTCGTTTCGTCGGTTGG
521 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
* * ** ** *
12564841 CTTAGGCATACGGAGTTCATTCCCAGTATAAGATCGGATTGGACTAAGGGTTTCGGCAGTAGGAT
586 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGTAGGAT
** * * * * * *
12564906 CGGCAGCACATAGAGAGGGACCTGACCAATCCCCGGCTTGCACATCCC-CCCCTCTGGCTGGCTG
651 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
12564970 AGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATA
716 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
** * ** **
12565035 CGGAGTTCATTTGCAGTCTAAGATCGGATCAGACTGAGGGTTGTGGCAGCACATGCTGGGCTCAA
781 CGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC-GAGGGTTACGGCAGCACATGCTGGGCTCGG
* * * * *
12565100 GCATGTGTTGGTGCCACATTTTTATTCGTCGGGGCACCGTCGTCGAAGCATCAT
845 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * **
12565154 CGGAGAGCCTGACCGGCGGCATTGGGGCTCTAGCGATC-GGGGGGCCGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
12565218 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
12565283 CTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTACCAGTAGCCATTAAATTATCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
12565348 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
12565413 TTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAAATCCTTCCA
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
*
12565478 AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
326 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * ** *
12565543 GTGTTGCCATGATACTTTTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAA
391 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
12565608 TGGCATTGGCACGCAGAAATATGAAGATGTGCTTAAACCCACCAACCACCCTATCGATCCACGGC
456 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * *
12565673 TTGCGCATCCCGTCTCTCTGGTCGACGTAGT----ATCCGCCTGCCCACTCGTTTCGTTGGTTGG
521 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
** * * * * *
12565734 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTATGACAGTAGGAT
586 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGTAGGAT
* * * ** *
12565799 CGGCAACACGCAGAGGGGGACCCGACTGAT-CCTCGACTTGCGCATCTTGCCCCTCTGGCCGACT
651 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
12565863 GAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
715 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* ** * * *
12565928 ATGGAGTTCATTCTTAGTCTAAGATCAGA-CTGTACCGAGGGTTGCGGCAGCACATGCTGGGCTC
780 ACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGA-CGAGGGTTACGGCAGCACATGCTGGGCTC
* * * ** * * ** *
12565992 GGCCATGTGCTGTTGTCGCATTTTTCTTCACCGGGCCACCGTCACCGGAGCAACAT
843 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * * * *
12566048 CGGAGAACCTGACCGGCAGTATTGGGGTTCCGACGATCGGCGGGGCCGGGGGGGTCTGCGCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACAT
* * ** *
12566113 GATGTGCGATGGGTGCAGGTACTAGGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTTGAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
12566178 ACTCACACCCCCTTAAAGAGCATTTTGAGATTTTATAGGCTTGTTGCCAGTAGCCATTAAAGTGT
130 ACTCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
12566243 CTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAAT
194 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
12566308 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
259 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
12566373 CGAAAAAATTTTAAAAAATCCCAAACC-TAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAG
324 CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
12566437 TCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
389 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
12566502 AATTGCTTTGGCACCCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
454 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
12566567 GCTTGCGCATCCCGTCTCTCT-GCTCGACGTAGTGCCCGCCCGCCCGTCCGCCCACTCCTTGCAT
519 GCTTGCGCATCCCGTCTCTCTGGC-CGACGTAGTGCCCGCCCG--C--CCGCCCACTCGTTTCGT
12566631 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
579 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
12566672 CAAATCAGAC
Statistics
Matches: 9767, Mismatches: 1313, Indels: 633
0.83 0.11 0.05
Matches are distributed among these distances:
871 9 0.00
873 1 0.00
874 205 0.02
875 494 0.05
876 75 0.01
877 5 0.00
878 8 0.00
879 8 0.00
880 8 0.00
881 20 0.00
882 13 0.00
883 14 0.00
884 10 0.00
885 21 0.00
886 136 0.01
887 146 0.01
888 164 0.02
889 716 0.07
890 309 0.03
891 472 0.05
892 250 0.03
893 954 0.10
894 218 0.02
895 17 0.00
896 538 0.06
897 219 0.02
898 10 0.00
899 2 0.00
900 11 0.00
901 1114 0.11
902 708 0.07
903 43 0.00
904 946 0.10
905 421 0.04
906 48 0.00
907 8 0.00
908 7 0.00
909 51 0.01
910 270 0.03
911 194 0.02
912 6 0.00
913 5 0.00
914 6 0.00
915 14 0.00
916 273 0.03
917 21 0.00
918 4 0.00
919 25 0.00
920 248 0.03
921 3 0.00
923 4 0.00
924 13 0.00
925 71 0.01
926 52 0.01
927 17 0.00
928 3 0.00
929 9 0.00
930 1 0.00
931 16 0.00
932 9 0.00
933 24 0.00
934 8 0.00
935 16 0.00
936 21 0.00
937 10 0.00
938 10 0.00
939 10 0.00
940 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGTAGGAT
CGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGATCGGACGAGGGTTACGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
Found at i:12559660 original size:26 final size:26
Alignment explanation
Indices: 12559631--12559683 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12559621 GTTGACTTAG
12559631 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
12559657 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
12559683 G
1 G
12559684 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:12560561 original size:26 final size:26
Alignment explanation
Indices: 12560532--12560584 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12560522 GTTGACTTAG
12560532 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
12560558 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
12560584 G
1 G
12560585 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:12561451 original size:26 final size:26
Alignment explanation
Indices: 12561421--12561473 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12561411 GTTGACTTAG
* *
12561421 GCATACGGAGTTCATT-CCCAGTTTAA
1 GCATAAGGAGTTC-TTCCCCAGTCTAA
12561447 GCATAAGGAGTTCTTCCCCAGTCTAA
1 GCATAAGGAGTTCTTCCCCAGTCTAA
12561473 G
1 G
12561474 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCTTCCCCAGTCTAA
Found at i:12562369 original size:26 final size:26
Alignment explanation
Indices: 12562317--12562369 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12562307 GTTGACTTAG
*
12562317 GCATACAAAGTTCATTCCCAGCCTAA
1 GCATACAAAGTTCATTCCCAGCATAA
* *
12562343 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAAAGTTCATTCCCAGCATAA
12562369 G
1 G
12562370 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGCATAA
Found at i:12563269 original size:26 final size:26
Alignment explanation
Indices: 12563239--12563289 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12563229 TGACTTAGGT
*
12563239 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
12563265 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
12563290 ATTAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:12564162 original size:26 final size:26
Alignment explanation
Indices: 12564132--12564182 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12564122 TGACTTATGT
*
12564132 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
12564158 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
12564183 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:12565034 original size:26 final size:26
Alignment explanation
Indices: 12565005--12565055 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12564995 TTGACTTAGG
12565005 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
**
12565031 CATACGGAGTTCATTTGCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
12565056 GATCGGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:12565934 original size:26 final size:26
Alignment explanation
Indices: 12565898--12565950 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12565888 GTTGACTTAG
12565898 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* **
12565924 GCATATGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12565950 G
1 G
12565951 ATCAGACTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12566793 original size:11 final size:11
Alignment explanation
Indices: 12566756--12566787 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
12566746 GCATCGTCGT
12566756 TGGAGCATCGC
1 TGGAGCATCGC
12566767 TGGAGCATCGC
1 TGGAGCATCGC
12566778 TGGAGCATCG
1 TGGAGCATCG
12566788 TCGGAGAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.19, C:0.25, G:0.38, T:0.19
Consensus pattern (11 bp):
TGGAGCATCGC
Found at i:12567172 original size:26 final size:26
Alignment explanation
Indices: 12567143--12567195 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12567133 GTTAACTTAG
*
12567143 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
12567169 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
12567195 G
1 G
12567196 ATTGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:12569082 original size:912 final size:905
Alignment explanation
Indices: 12566988--12570536 Score: 4278
Period size: 912 Copynumber: 3.9 Consensus size: 905
12566978 CGTGTTCGAA
* * * * * * * *
12566988 ACGGGGTTCATTCCCAGTCTAAGATCATATCGGACCGAGGGTTATAGTAGTAGGATCGACAGCAC
1 ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTAGAGTAGCAGGATCGGCAGCAC
* * * * *
12567053 ACAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCTCGT
66 ACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGC
* * * *
12567118 ATGCTCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCA
131 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
* * * *
12567183 TTCCCAGTCTAAGAT-TGAACTAGACTGAGGGTTACGACAGCACATGCTGGGCTC-GAGCATGTG
196 TTCCCAGTCTAAGATCAGCACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAG-GCATGTG
* * * * **
12567246 CTGGTGCCACATTTTTCTTC-ACTGGGG---C-T--CC--ATCAT---CGGAGAACTTGACCGGT
260 CTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGAC
* * *
12567299 GGCATTGGGGTTCTGGCGAAT-GGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCT
324 GGCATTGGGGTTCCGACG-ATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
12567363 GGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAA
387 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
12567428 GAGCATTTGAGATTTTACA-GATTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTT
452 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
12567492 TTTCAAATGGTCACAAAATCTTGTACACATT-GAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
517 TTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTAAATTTTTTTATGCATGCCAA
* * *
12567556 CAAAAATACAAGGATCACGTCTACCAACTTTGTGG-CAAAACTCCTTCCGAAAAAATTTTAAAAA
581 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * ** * *
12567620 GTCTC-AA-C-C-----GTTTTGAAAATCA-TGAAAAATAAAAAACGAGTCGTCTTGCCGTGAAA
646 ATCCCGAACCACAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
12567676 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGT
710 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
* *
12567741 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTA
775 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CC-TA
** * * *
12567806 TCTCTGGCTTGCGTAGTGCCCGCCCCCTCGCCC-AC-CCG--CTCGTTTCATCGGTTGGCTTAGG
838 TCTCTGGCCGGCGTAGTGCCCGCCCCCCCGCCCGTCGCCGCCCTCGTTTCATCGATTGGCTTAGG
12567867 CAT
903 CAT
* * * * *
12567870 ACGGAGTTCATTCCCAATCTAAAATCAGACCAGATCGAGGGTT-GTAGCAGCAGGATCAGTAGCA
1 ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTAG-AGTAGCAGGATCGGCAGCA
* * * * * * *
12567934 CGCAGAGGGGGACCCAACCGATCCCCAGCTTGGGCATCTCGCCCTTCTGGCCAGTTGAGCGCCCG
65 CACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCG
* * * * * *
12567999 CACACTCGTTCCGTGGGTTGACTTAGGCTTACAGAGTTCATTCCCAGTCTAAGCAAACGGAGTTC
130 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
* * * ** * * **
12568064 ATTCCTAGTCTAAGATC-GAACTGGACCGAGGGTTGCGGTAACACATGCTAGGCTTGGGCATGTG
195 ATTCCCAGTCTAAGATCAGCACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTG
* ** *
12568128 CTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGATG
260 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACG
* * * *
12568193 GCATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGT
325 GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
12568258 ACTTGGCCCTTATATTGG-CCCCTATTCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
390 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
12568322 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTT
455 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
12568387 CAAATGGTAACAAAATCTTGTACACTTCTATTTTTTAGCTAAATTTTTTTATGCATGCCAAAAAA
520 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCATGCCAAAAAA
* * *
12568452 AATACAGGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
585 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
** * *
12568517 CGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAGTTCA
650 CGAACCACAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
12568582 CGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATCAAAATGGCATTGGCACATAGAAA
715 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAA
* *
12568647 TATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCTATCTCTTT
780 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATCTC--T
* *
12568712 GGCCGGCGT-GTGCCCGCCCGCCCCCCCGCCCGTTCGCCTGCCCACTCGTTCCGTCGATTGGCTT
843 GGCCGGCGTAGT----GCCCGCCCCCCCGCCCG-TCGCC-G-CC-CTCGTTTCATCGATTGGCTT
12568776 AGGCAT
900 AGGCAT
* * * *
12568782 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGA-TAGTAGGATTGGCAGCA
1 ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTA-GAGTAGCAGGATCGGCAGCA
** *
12568846 CGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GACTAAGCGCCC
65 CACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAG-CTGAGCGCCC
* *
12568910 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTT
129 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * *
12568975 CATTCCCAGTCTAAGATCAG-ATTAGACTGAGGGTTGTGGCAGCACAAGCTGGGCTCAGG-ATTG
194 CATTCCCAGTCTAAGATCAGCACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCA-TG
* * * ** * *
12569038 TGTTGGTGTCGCATTTTTCTTCGTCGAGGTGCCATCACCGGAGCATCGCCGGAGAACCTAACCGG
258 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGA
*
12569103 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTG
323 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
12569168 GTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACA-CCCCTTAAAG
388 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
12569232 AGTATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
453 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
12569297 TTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGTTGAAA-TTTTTTATGCATGCCAAA
518 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTTTATGCATGCCAAA
** ** *
12569361 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGGCCTAAC-AAAAAATTTTGAAAAA
582 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
12569425 TCTCGAACCACAAAAAGTTTCAAAAAT-CTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
647 TCCCGAACCACAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
12569489 TCATGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGTATTGGCATGCA-
712 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CAT
* * * **
12569553 A-AAATATGAAGAGGTGCCTAAACCAACCCACCACCCTATCGATCCACGGCTTTGCGCATCCCGT
775 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCCTAT
* **
12569617 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGATCG-C-CCGCCCTCGTTTCATCGATTGGCTTAGGC
839 CTCTGGCCGGCGTAGTGCCCGCCCCCCCGCCCGTCGCCGCCCTCGTTTCATCGATTGGCTTAGGC
12569680 AT
904 AT
* * *
12569682 ACAGAGTTCATTCCCAATCTAAGATTAGACCAGACCGAGGGTT-GCAGTAGCAGGATCGGCAACA
1 ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTAG-AGTAGCAGGATCGGCAGCA
* * * *** *
12569746 CACAGAGGGGGACCC-AGTCGATCCTC-GATT-TATATCCCGCCCCTCTGGTC-GACTGA--GCC
65 CACAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAG-CTGAGCGCC
* * * * *
12569805 CGCACGCTCGTTTCGTGGGTTGACTTATGAATACGGAGTTTATTCCTAGTCTAAGCATACGGAGT
128 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGT
*
12569870 TCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGCCTAAGATCGAACCAGACCGAGGGTTGTG
193 TCATTCCCAGTCTAAG-AT-C--AG--------CA--C-----T------AGACCGAGGGTTGCG
* *
12569935 ACAGCACATGCTGGGCT-AGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATC
233 ACAGCACATGCTGGGCTCA-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACC
* * * * * * *
12569999 AGAGCATCACCGGAGAACCTGACCGACGACGTTAGGGTTACGACGATCAGGGGGCCGGGGGGTGT
297 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGT
* * * *
12570064 GCGCACATGATGTGCAATTGGTGCTGGTACCTGCCCCTTATATTGGCCCCCTATCCCTCATCAAA
362 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* ** *
12570129 CCTCGAGAACTCACACCCCCTTAAAAAGCATTTTTGATTTTACAGGTTTGTTGCCAGTAGCCATT
427 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
12570194 AAAGTGTCTGAAATGGGGACACCTTTTTCAAAGTAGTCACAAAATCTTGTACACTTCGAGTTTTG
492 AAAGTGTCTGAAATGGGGACACTTTTTTCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTT
** * * * *
12570259 AGCTGGATTTTTTTACGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGAGGCCAAA
556 AGCTAAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
12570324 ACTTCTTCCGAAAAAA-TTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAAAAG
621 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATAGTGAAAAATAG
* * *
12570388 AAAATGAGTCGTCTTGCCATG-AACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTCACAA
686 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*** * * *
12570452 GCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTACCTAAACACACCTACCACCCTATT
751 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
12570517 GATCCACGGCTTGCGCATCC
816 GATCCACGGCTTGCGCATCC
12570537 CGTCTCTCTA
Statistics
Matches: 2289, Mismatches: 287, Indels: 141
0.84 0.11 0.05
Matches are distributed among these distances:
882 232 0.10
883 2 0.00
885 1 0.00
886 1 0.00
888 1 0.00
890 4 0.00
891 62 0.03
892 178 0.08
893 71 0.03
894 2 0.00
895 1 0.00
896 77 0.03
897 2 0.00
898 23 0.01
899 11 0.00
900 104 0.05
901 165 0.07
902 1 0.00
903 2 0.00
904 16 0.01
906 15 0.01
907 2 0.00
908 1 0.00
909 11 0.00
910 136 0.06
911 55 0.02
912 534 0.23
913 35 0.02
914 1 0.00
916 1 0.00
921 1 0.00
922 196 0.09
923 86 0.04
924 224 0.10
925 35 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (905 bp):
ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTAGAGTAGCAGGATCGGCAGCAC
ACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
TTCCCAGTCTAAGATCAGCACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGC
TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGG
CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCATGCCAAAAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
GAACCACAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTGGC
CGGCGTAGTGCCCGCCCCCCCGCCCGTCGCCGCCCTCGTTTCATCGATTGGCTTAGGCAT
Found at i:12569864 original size:26 final size:26
Alignment explanation
Indices: 12569835--12569911 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
12569825 TGACTTATGA
* *
12569835 ATACGGAGTTTATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
12569861 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
* *
12569887 ATACGGAGTTCACTCCCAGCCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12569912 ATCGAACCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:12570752 original size:26 final size:26
Alignment explanation
Indices: 12570723--12570773 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12570713 TCGGTCCGAT
*
12570723 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
12570749 CTTAAACTGTGAATGAACTTCGTAT
1 CTTAAACTGGGAATGAACTCCGTAT
12570774 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:12571661 original size:26 final size:26
Alignment explanation
Indices: 12571625--12571675 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
12571615 GGTCCGATCA
*
12571625 TAGATTGGGAAAT-AACTCCATATGCT
1 TAGACTGGG-AATGAACTCCATATGCT
*
12571651 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
12571676 CTTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:12573241 original size:26 final size:26
Alignment explanation
Indices: 12573211--12573263 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12573201 GTTGACTTCG
*
12573211 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12573237 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12573263 G
1 G
12573264 ATGGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12574972 original size:26 final size:26
Alignment explanation
Indices: 12574935--12574987 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12574925 GTTGACTTAG
* *
12574935 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTAATTCCCAGTCTAA
12574961 GCATACAAAGTTAATTCCCAGTCTAA
1 GCATACAAAGTTAATTCCCAGTCTAA
12574987 G
1 G
12574988 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTAATTCCCAGTCTAA
Found at i:12575849 original size:26 final size:26
Alignment explanation
Indices: 12575819--12575868 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12575809 TTGACTTAGG
12575819 CATACGAAGTTCATTCCCAGTCTAAA
1 CATACGAAGTTCATTCCCAGTCTAAA
*
12575845 CATACGGAGTTCATTCCCAGTCTA
1 CATACGAAGTTCATTCCCAGTCTA
12575869 TGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAA
Found at i:12577339 original size:890 final size:893
Alignment explanation
Indices: 12574067--12581082 Score: 9140
Period size: 892 Copynumber: 7.9 Consensus size: 893
12574057 GTTGACTTAG
* * * *
12574067 GCATAC-AGAGTTCATTCCCAGTGTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCT-G
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
12574130 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGAGGCACCATCGTCGGAGCATCACCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGA
* * *
12574194 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCGGGGGGTGTGCGCA-AGTGATGTG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGCGCACA-TGATGTG
* *
12574258 CGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12574323 ACCCCCTTAAAGAGCATTTGAGATATTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12574388 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *** * *
12574453 TGCATG-CAAAAAAAATACAAGGATCATGTCTGCCGAGTTTAATGCCAAAAATCC-TTCTGAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTTC-GAAAA
* ** *
12574516 AATTTTAAAAAATCTCGAACCTTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTGT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * **
12574581 TGCCATGAAACTTCACGTGAAGGTTTAAGGGACCAATGTACGAATTTAGAAGATATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12574646 ATCGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
12574710 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCACCGCCCGCCCGCCCACTCGTTTCGTCAGTT-GCT
647 GCATCCCGTCTCTCTGGCCGGCGTAGTG-C-CCGCCCGCCCG----CTCCTTTCGTCAGTTGGCT
* * * * * **
12574774 TAGGCATACGG-GTTCATTTCCAGTCTAAGATTAGATC-GAATCGAGGGTTGCAACAGCAGGATC
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCAGGATC
* * * **
12574837 GGTAGCATGCAGAAGGGGACCCGCCCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGGCTGA
770 GGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
12574902 ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
835 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12574961 GCATACAAAGTTAATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12575026 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT---C---G--T---CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
** * *
12575080 ACCTGACCGGTGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGTATGCGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGCG
12575145 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
12575210 CCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGGCAATAGCCATTAAAGTGTTTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
12575275 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
12575340 CATGCCAAGAAAAATACAAGGATCACGTCCACCAAGTTTCGGGACAAAACTCCTTTCGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTTCGAAAAAAT
* * * *
12575405 TTTAAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
455 TTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
12575470 GCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG-ATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * *
12575534 TGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGC
584 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
12575599 ATCCCATTTCTCTGGTCGGCATAGTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATA
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCCTTTCGTCAGTTGGCTTAGGCATA
* * * * ** ** * *
12575664 CAGAGTTCATTCCCAGTCTAAGAAT-GGATCGGATGGAGGGTTGTGGCAGCAGGATCAGCAGCAC
714 CGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGTAGCAC
* * * * * *
12575728 ACAGAGGGGGACCCGACCGATCCCCGGCTTTCGCATCCTGCCCTTCTGGCCGACTGAGCGCCCGT
778 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
** * *
12575793 ACGCTTATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12575844 ACATACGGAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12575909 CTCGGACATGTGCTGGTGCCGCATTTTTCTTCG-CCGGGCACCATCGCTGGAGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* ** * * *
12575973 ACCTGATCGGTGGCATTGGGGTTCCGGCGATCAGGGGGGCGGGGGGTGTGCGCAAATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGTGTGCGCACATGATGTGCG
*
12576038 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
12576103 CCCCTTAAAGAGCATTTGATATGTTATAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAAT-G
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
12576167 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * *
12576232 CATGCCAAAAAAAATACAAGGATGACATCCACCAAGTTTGGGGCCAAAA-TGCCTTTCGAGAAAA
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACT-CCTTTCGAAAAAA
* *
12576296 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGTGTCGTCATG
454 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
12576361 CCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
12576426 TGGCATGCAGAAATATGAAGATGTAG-CTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
584 TGGCACACAGAAATATGAAGATGT-GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * *
12576490 CATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCAGCTCGTTCCTATCGTCAGTTGGGTTCGGCAT
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCCTTTCGTCAGTTGGCTTAGGCAT
** * * * * * * ** * *
12576555 ACGGAGTTTGTTCCCAGTCTAAGATCAGGCTAGACTGAGGGTCACAGTAGCAGGATTAGCAGCAT
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGTAGCAC
* ** * *
12576620 GCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCTCCTCTGGCTGGCTGAGCGCCCGC
778 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
12576685 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12576736 GCATACAAAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATTCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
12576801 CTCAGGCATGTGCTGGTGCCGCA-TTTTCTTCGTCGGGGCACCATCACCGGAGCATTACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
*
12576865 ACCTGACCGACGGCATTGGGGTTCCG-CGATC-GGGGGCACCGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC-CGGGGGTGTGCGCACATGATGTGCG
* *
12576928 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTCGTGAACTCACA-
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
12576992 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12577057 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
12577122 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCC-TTCTGAAGAAA
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTTC-GAAAAAA
* *
12577186 TTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
12577251 CCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
12577316 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGTTTGCGC
584 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
12577381 ATCCCGTCTCCCTGGCCAGCGTAGTGCCTGCTCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGG
649 ATCCCGTCTCTCTGGCCGGCGTAGTG-C--C-CGCCCGCCCGCTCCTTTCGTCAGTTGGCTTAGG
* * * *
12577446 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACAGTAGCAGGATCGGTAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGTAG
* * * * *
12577511 CACGTAGAAGGGGAACCTGAACGATCCCTGGCTTGCGCAT-CCGCCCCTCTGG-CGGACTGAGCG
775 CACGCAG-AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-CTGAGCG
* * * *
12577574 CCCGTACGCTCGTTTCGTGAGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAA
838 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
12577630 G-AT-CG--G---ATT----G-----G-T---------CCGAGGGTTGCGGCAGCACATGCTTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
12577669 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGTGGCACCATTGCCAGG-GCATCGCAGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC-GGAGCATCGCCGGAG
* * *
12577733 AACCTGACCAACGGCTTTGGGGTTCCGACGAT-GGGAGGGCCGGGGGGTGTGTGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCC-GGGGGTGTGCGCACATGATGTG
* *
12577797 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* **
12577862 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCCACCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12577927 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * * *
12577992 TTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGTGAAAATTCC-TTCTGAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTTC-GAAA
* * * *
12578056 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCATC
451 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12578121 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
12578186 CATTGGCATGCCGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTTA
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
12578251 CGCATCCCGTAC-CTCTGGCCGGCGTAGTGCCCGCCCGTTCGCCTGCCCACTCGCCCGCCGGTTC
646 CGCATCCCGT-CTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-G----CT------CC-TTTC
* * *
12578315 GTTTCATCGGTTGGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
695 G--TCA---GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * * * *
12578380 TGCGGCAGTAGGATCGGTAGCACGTAGAAGGGGACTCGACCGATCCCCGGCTTGTGCATCCCACC
755 TACGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * * * * **
12578445 CCTCTAGCCGGCTGAGTGCCTGCACGCTCGTTTCGCGGGTTGACTTAAGCATACAAAGTTCATTC
820 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
12578510 CCAGTCTAA
885 CCAGTCTAA
* * * * * * * *
12578519 GCATACGGAGTTGATTCCCAGTCTAAGATTGGATCAGTCTGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12578584 CTCGGACATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGGGCATCGCAGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
12578649 ACCTGATC-AGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCG
*
12578713 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
12578778 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
12578843 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTCGCTGAATTTTTTTATG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
12578908 CTTGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGTGAAAATTCCTTTCGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTTCGAAAAAAT
* * * *
12578973 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGC
455 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
12579038 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * * * *
12579103 GGCATGCAGAAATGTGAAGATGTGCCTAAACCCACCTA-CACCTTACCGATCCACAGCTTGCGCA
585 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
12579167 TCCCGTCTCTCTGGCCGACGTAGTGCCCGGCCGCTCGCCCGGCCGCTCGTTTCGTCGGTTGGATT
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCC-G-C-C-CG--C--CCGCTCCTTTCGTCAGTTGGCTT
* * *
12579232 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATTGG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGG
* ** * *
12579297 TAGCACGCAGAGGGGGACCCGGCCGATCCTTGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGC
772 TAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
12579362 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12579419 GCATACGAAGTTCATTCCCAGTCTAGGATCGGATCGGATCGAGGGTTACGGCAGGACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * * *
12579484 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCACCAGGGCACCATCGTCGGGGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
*
12579549 ACCTGACCGACGGCATTCGGGTTCCGACGATCGGGGGGGCCGGGTGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GG-GGGTGTGCGCACATGATGTG
12579614 CGATGGGTGCTGGTACTTGGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 CGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12579679 CACCCCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12579744 TGGGGACACTTTTTTAAAATGGTCACGAAATCTTGTACACCTT-GAGTTTTTTGCTGAATTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTT
* ** * *
12579808 TATGCATGCCAACAAAAATACAACTATCATGTCTACCAAGTTTGGGGT--TAACTCCTTTCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTTCGAAA
* ** * *
12579871 AAAATAGACAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
12579936 CTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12580001 CATTGGCACATAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
12580066 CACATCCCGTCTCTTTGGCCGACGTAGTGCCCACCCGTCCGCTCGCCCGCTCGTTTCATCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCG--C-C-CGCCCGCTCCTTTCGTCAGTTG
* * * *
12580131 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTGCTGCAGCAGGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGA
* * * * * * * * * * *
12580196 TCAGCAGCATGTAGAAGGGGACCCGGCCGATCCTCGGCTTACGCATCCCACCTCTCTGGCTGGCT
768 TCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
12580261 GAGCACCCGCAAGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12580322 GCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-GGCAGCACATGCTGGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12580386 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
12580451 ACCTGACCGACGGCATTGGGGTTCTCG-CGATCAGAGGGCCAGGGGGTGGGCGCACATGATATAC
131 ACCTGACCGACGGCATTGGGGTTC-CGACGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGC
* * * * *
12580515 GATTGGAGCTGGTACTTGGCCCCTATATTGTCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12580580 CCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATC
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
12580645 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTGTGTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
12580710 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTTCGAAAAAA
* * *
12580775 TTTT-AAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
454 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
12580839 CCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
12580904 TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCATGGCTTGCG-
584 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * * *
12580968 ATCCCGTCTCTCT-GTTGGCATAGTACCCGTCCGCCCGCTCCTTTCGCCAGTTGGCTTAGGCATA
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCCTTTCGTCAGTTGGCTTAGGCATA
* * *
12581032 CGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCA
714 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCA
12581083 CATGTTGGGC
Statistics
Matches: 5419, Mismatches: 579, Indels: 252
0.87 0.09 0.04
Matches are distributed among these distances:
868 46 0.01
869 60 0.01
870 10 0.00
871 87 0.02
872 117 0.02
873 272 0.05
874 1 0.00
877 3 0.00
878 1 0.00
881 14 0.00
882 23 0.00
883 235 0.04
884 48 0.01
885 222 0.04
886 129 0.02
887 119 0.02
888 26 0.00
889 211 0.04
890 479 0.09
891 115 0.02
892 534 0.10
893 181 0.03
894 216 0.04
895 69 0.01
896 4 0.00
898 10 0.00
899 209 0.04
900 518 0.10
901 34 0.01
902 271 0.05
903 316 0.06
904 204 0.04
905 9 0.00
906 3 0.00
907 10 0.00
911 1 0.00
912 49 0.01
913 232 0.04
914 209 0.04
915 112 0.02
916 7 0.00
917 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTTCGAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCCTTTCGTCAGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGTAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12578530 original size:26 final size:26
Alignment explanation
Indices: 12578490--12578545 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
12578480 CGGGTTGACT
12578490 TAAGCATACAAAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAGTC
** *
12578516 TAAGCATACGGAGTTGATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAGTC
12578542 TAAG
1 TAAG
12578546 ATTGGATCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAGTC
Found at i:12579208 original size:12 final size:12
Alignment explanation
Indices: 12579191--12579215 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12579181 CCGACGTAGT
12579191 GCCCGGCCGCTC
1 GCCCGGCCGCTC
12579203 GCCCGGCCGCTC
1 GCCCGGCCGCTC
12579215 G
1 G
12579216 TTTCGTCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.56, G:0.36, T:0.08
Consensus pattern (12 bp):
GCCCGGCCGCTC
Found at i:12579430 original size:26 final size:26
Alignment explanation
Indices: 12579393--12579443 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12579383 GTTGACTTAG
*
12579393 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12579419 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
12579444 GGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12580255 original size:903 final size:900
Alignment explanation
Indices: 12574067--12581082 Score: 8679
Period size: 900 Copynumber: 7.9 Consensus size: 900
12574057 GTTGACTTAG
* * * *
12574067 GCATAC-AGAGTTCATTCCCAGTGTAAGAT-TGAACTGGACCGAGGGTTGCGGCAGCACATGCT-
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGATC-GG-TCGAGGGTTGCGGCAGCACATGCTG
* * * * *
12574129 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGAGGCACCATCGTC-GGAGCATCACCGG
63 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCAGG-GCATCGCAGG
* * *
12574193 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGCGGGGGGTGTGCGCA-AGTGATG
127 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGGTGTGCGCACA-TGATG
* * *
12574256 TGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTC
* *
12574321 ACACCCCCTTAAAGAGCATTTGAGATATTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12574386 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTT
* * * * * ** ** *
12574451 TGTGCATG-CAAAAAAAATACAAGGATCATGTCTGCCGAGTTTAATGCCAAAAATCC-TTCTGAA
386 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGTAAAACTCCTTTC-GAA
* * ** * * *
12574514 AAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
449 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCAT
* * * * * * **
12574579 GTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCAATGTACGAATTTAGAAGATATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATG
* *
12574644 GCATCGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
579 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * * *
12574709 G-GCATCCCGTCTCTCTGGCCGGTGTAGTG-CCA-CCGCCCGCCCGCCCACTCGTTTCGTCAGTT
644 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCTCGCCCGCTCGTTTCATCGGTT
* * * * **
12574771 -GCTTAGGCATACGG-GTTCATTTCCAGTCTAAGATTAGATC-GAATCGAGGGTTGCAACAGCAG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAG
* * * * *
12574833 GATCGGTAGCATGCAGAAGGGGACCCGCCCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGG
773 GATCGGTAGCACGTAGAAGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGG
* * *
12574898 CTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 CTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
12574961 GCATACAAAGTTAATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTGCAGTAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATC-GG-TCGAGGGTTGCGGCAGCACATGCTGG
* * ** *
12575025 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT---C---G--T--C-GGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCAGGGCATCGCAGGAG
** * * *
12575079 AACCTGACCGGTGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGTATGCGCACATGATGTGC
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTGC
*
12575144 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACA
* * * *
12575209 CCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGGCAATAGCCATTAAAGTGTTTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12575274 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTAT
* * **
12575339 GCATGCCAAGAAAAATACAAGGATCACGTCCACCAAGTTTCGGGACAAAACTCCTTTCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGTAAAACTCCTTTCGAAAAAA
* * * *
12575404 TTTTAAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
453 TTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTT
* *
12575469 GGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG-ATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCA
** * * *
12575533 TTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTACG
582 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
12575598 CATCCCATTTCTCTGGTCGGCATAGTG----CCCG--C-C-CGCCCGCTCGTTTCATCAGTTGGC
647 CATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCTCGCCCGCTCGTTTCATCGGTTGGC
* * * * ** *
12575655 TTAGGCATACAGAGTTCATTCCCAGTCTAAGAAT-GGATCGGATGGAGGGTTGTGGCAGCAGGAT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * ** * * * * ** * *
12575719 CAGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTTCGCATCCTGCCCTTCTGGCCGACTG
776 CGGTAGCACGTAGAAGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
* * ** * *
12575784 AGCGCCCGTACGCTTATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
841 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
12575844 ACATACGGAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGG-TCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12575909 CTCGGACATGTGCTGGTGCCGCATTTTTCTTCGCCG-GGCACCATCG-CTGGAGCATCACTGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCAGG-GCATCGCAGGAG
* ** * * *
12575972 AACCTGATCGGTGGCATTGGGGTTCCGGCGATCAGG-GGGGCGGGGGGTGTGCGCAAATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGAGGGCCGGGGGGTGTGCGCACATGATGTG
12576036 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACTTCGAGAACTCA
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAAC-TCGAGAACTCA
* * * *
12576100 CACCCCCTTAAAGAGCATTTGATATGTTATAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
12576165 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTT
* * * * * *
12576229 ATGCATGCCAAAAAAAATACAAGGATGACATCCACCAAGTTTGGGGCCAAAA-TGCCTTTCGAGA
387 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-TAAAACT-CCTTTCGAAA
* * * * *
12576293 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGTGTCGTC
450 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATC
* * * *
12576358 ATGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACATGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGG
** *
12576423 CATTGGCATGCAGAAATATGAAGATGTAG-CTAAACCCACCTACCACCCTATCGATCCACGACTT
580 CATTGGCACACAGAAATATGAAGATGT-GCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * **
12576487 GCGCATCCCGTCTCTCTGGCC-AGCATAGTG----CCCG-CCAGCTCGTTCCTATCG--TCA---
644 GCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCACCCGTCC-GCTCG-CCCGCTCGTTTCATCG
* * ** * * * ** * *
12576541 GTTGGGTTCGGCATACGGAGTTTGTTCCCAGTCTAAGATCAGGCTAGACTGAGGGTCACAGTAGC
706 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
** * * * * * * * * * *
12576606 AGGATTAGCAGCATGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCTCCTCTGGCT
771 AGGATCGGTAGCACGTAGAAGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCC
* * * *
12576671 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
836 GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
12576736 GCATACAAAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATTCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATC-GGTCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * ** *
12576801 CTCAGGCATGTGCTGGTGCCGCA-TTTTCTTCGTCGGGGCACCATCACC-GGAGCATTACCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCAGG-GCATCGCAGGAG
*
12576864 AACCTGACCGACGGCATTGGGGTTCCG-CGATCGG-GGGCAC-CGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGC-CGGGGGGTGTGCGCACATGATGTG
* * *
12576926 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTCGTGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCAC
*
12576991 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12577055 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTA
*
12577120 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCC-TTCTGAAGA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGT-AAAACTCCTTTC-GAAAA
* * * *
12577184 AATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCT
* * *
12577249 TGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGC
* * *
12577314 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGTTTGC
581 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * **
12577379 GCATCCCGTCTCCCTGGCC-AGCGTAGTG-CC-TGC-T-CGCCCGCCCGCTCGTTTTGTCGGTTG
646 GCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCACCCGTCCGCTCGCCCGCTCGTTTCATCGGTTG
* * * * *
12577439 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACAGTAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* ** *
12577504 TCGGTAGCACGTAGAAGGGGAACCTGAACGATCC-CTGGCTTGCGCAT-CCGCCCCTCTGG-CGG
775 TCGGTAGCACGTAGAAGGGG-ACCCGGCCGATCCTC-GGCTTGCGCATCCCACCCCTCTGGCCGG
* * * * *
12577566 ACTGAGCGCCCGTACGCTCGTTTCGTGAGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAA
838 -CTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
12577630 G-AT-CG--G---------A---T----T-GG-TC---CGAGGGTTGCGGCAGCACATGCTTGGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGTCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
12577670 TTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGTGGCACCATTGCCAGGGCATCGCAGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCAGGGCATCGCAGGAGAA
* * * *
12577735 CCTGACCAACGGCTTTGGGGTTCCGACGATGGGAGGGCCGGGGGGTGTGTGCACATGATGTGCGA
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
12577800 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACACC
* ** *
12577865 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCCACCAGTAGCCATTAAAGTGTCTGAAATTGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
12577930 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTTTTG
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAA-TTTTTTTATG
* *
12577995 CATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGTGAAAATTCC-TTCTGAAAAAA
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGT-AAAACTCCTTTC-GAAAAAA
* * *
12578059 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCATCTTG
453 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTG
12578124 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
** * * *
12578189 TGGCATGCCGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTTACGC
583 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
12578254 ATCCCGTAC-CTCTGGCCGGCGTAGTGCCCGCCCGTTCGCCTGCCCACTCGCCCGCCGGTTCGTT
648 ATCCCGT-CTCTCTGGCCGACGTAGTGCCCACCCG-T--CC-G----CTCGCCCG-C---TCGTT
* * *
12578318 TCATCGGTTGGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGC
700 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* * * * *
12578383 GGCAGTAGGATCGGTAGCACGTAGAAGGGGACTCGACCGATCCCCGGCTTGTGCATCCCACCCCT
765 GGCAGCAGGATCGGTAGCACGTAGAAGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCACCCCT
* * * * **
12578448 CTAGCCGGCTGAGTGCCTGCACGCTCGTTTCGCGGGTTGACTTAAGCATACAAAGTTCATTCCCA
830 CTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
12578513 GTCTAA
895 GTCTAA
* * * * *
12578519 GCATACGGAGTTGATTCCCAGTCTAAGATTGGATCAGTCTGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGTC-GAGGGTTGCGGCAGCACATGCTGGG
* * * * *
12578584 CTCGGACATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGGGCATCGCAGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCAGGGCATCGCAGGAGA
* * *
12578649 ACCTGATC-AGCAGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTGC
12578712 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACA
*
12578777 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12578842 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTCGCTGAATTTTTTTAT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTAT
* * *
12578907 GCTTGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGTGAAAATTCCTTTCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGT-AAAACTCCTTTCGAAAAAA
12578972 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTG
453 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTG
12579037 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
** * * * *
12579102 TGGCATGCAGAAATGTGAAGATGTGCCTAAACCCACCTA-CACCTTACCGATCCACAGCTTGCGC
583 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * * *
12579166 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGGCCG-CTCGCCCGGCCGCTCGTTTCGTCGGTTGGA
648 ATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTC-CGCTCGCCCGCTCGTTTCATCGGTTGGC
* * * *
12579230 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * ** *
12579295 GGTAGCACGCAGAGGGGGACCCGGCCGATCCTTGGCTTGCGCATCCTGCCCCTCTGGCCGACTGA
777 GGTAGCACGTAGAAGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
12579360 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12579419 GCATACGAAGTTCATTCCCAGTCTAGGATCGGATCGGATCGAGGGTTACGGCAGGACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGG-TCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
12579484 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCACC-AGGGCACCATCGTCGGGGCATCGTCA-GA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGA-GGCACCATCGCCAGGGCATCG-CAGGA
* *
12579547 GAACCTGACCGACGGCATTCGGGTTCCGACGATCGGGGGGGCCGGGTGGGTGTGCGCACATGATG
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGAGGGCCGGG-GGGTGTGCGCACATGATG
*
12579612 TGCGATGGGTGCTGGTACTTGGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 TGCGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACT
* *
12579677 CACACCCCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
12579742 AATGGGGACACTTTTTTAAAATGGTCACGAAATCTTGTACACCTT-GAGTTTTTTGCTGAATTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTTGCTGAATTTT
** * *
12579806 TTTATGCATGCCAACAAAAATACAACTATCATGTCTACCAAGTTTGGGGT-TAACTCCTTTCGAA
384 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAACTCCTTTCGAA
* ** * * * *
12579870 AAAAATAGACAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
449 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCAT
* *
12579935 CCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATG
* *
12580000 GCATTGGCACATAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
579 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
12580065 GCACATCCCGTCTCTTTGGCCGACGTAGTGCCCACCCGTCCGCTCGCCCGCTCGTTTCATCGGTT
644 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCTCGCCCGCTCGTTTCATCGGTT
* * *
12580130 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTGCTGCAGCAGG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * * * *
12580195 ATCAGCAGCATGTAGAAGGGGACCCGGCCGATCCTCGGCTTACGCATCCCACCTCTCTGGCTGGC
774 ATCGGTAGCACGTAGAAGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGC
* * * * * *
12580260 TGAGCACCCGCAAGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
839 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12580322 GCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-GGCAGCACATGCTGGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGG-TCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
12580386 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCGTC-GGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCAGGGCATCG-CAGGAG
* * * * *
12580450 AACCTGACCGACGGCATTGGGGTTCTCG-CGATCAGAGGGCCAGGGGGTGGGCGCACATGATATA
129 AACCTGACCGACGGCATTGGGGTTC-CGACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * * *
12580514 CGATTGGAGCTGGTACTTGGCCCCTATATTGTCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCAC
*
12580579 ACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * * *
12580644 CGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTGTGTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTA
* ** *
12580709 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGTAAAACTCCTTTCGAAAAA
* * *
12580774 ATTTT-AAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTT
* *
12580838 GCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCA
* * *
12580903 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCATGGCTTGCG
582 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * ** *
12580968 -ATCCCGTCTCTCT-GTTGGCATAGT----ACCCGT---C-CGCCCGCTCCTTTCGCCAGTTGGC
647 CATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCTCGCCCGCTCGTTTCATCGGTTGGC
* * * *
12581023 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCA
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
12581083 CATGTTGGGC
Statistics
Matches: 5422, Mismatches: 565, Indels: 274
0.87 0.09 0.04
Matches are distributed among these distances:
868 45 0.01
869 54 0.01
870 9 0.00
871 86 0.02
872 115 0.02
873 271 0.05
874 4 0.00
875 1 0.00
877 1 0.00
878 1 0.00
880 1 0.00
881 21 0.00
882 22 0.00
883 236 0.04
884 41 0.01
885 227 0.04
886 127 0.02
887 116 0.02
888 21 0.00
889 226 0.04
890 484 0.09
891 125 0.02
892 516 0.10
893 184 0.03
894 203 0.04
895 69 0.01
896 2 0.00
897 5 0.00
898 10 0.00
899 206 0.04
900 529 0.10
901 38 0.01
902 272 0.05
903 327 0.06
904 211 0.04
905 4 0.00
908 2 0.00
909 2 0.00
910 2 0.00
911 3 0.00
912 51 0.01
913 231 0.04
914 207 0.04
915 114 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGTCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCAGGGCATCGCAGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTATGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAACTCCTTTCGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCTCGCCCGCTCGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTA
GCACGTAGAAGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12582429 original size:531 final size:533
Alignment explanation
Indices: 12581418--12582470 Score: 1605
Period size: 531 Copynumber: 2.0 Consensus size: 533
12581408 TTTTTTTGTA
* *
12581418 CATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACACCTATCAAAAAAAT
1 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTATCAAAAAAAT
*
12581483 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCATGC
66 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-AGTCGT-ATGC
* *
12581548 CATGAAACTTCACGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCATAAAAATGGCATT
129 CATGAAACTTAACGTGAAGGCTTAAGGGAAAATTGTACGAATTTACAAGCCATAAAAATGGCATT
* *
12581613 GGCACGTAAAAATATCGAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGTTTGCGCA
194 GGCACGCAAAAATATCGAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCA
* * * * * * *
12581678 TCCCGTCTCTCTGGGCGGTGTAGTGCTTGCCTGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTT
259 TCCCGTCTCTCTAGCCGGCGTAGTACCTGCCCGCCCGCCCGCCCACTCGTTTCATCAGTTGGCTT
* * * *
12581743 AGGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCAA
324 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGATCAA
* * *
12581808 CAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGC
389 CA-CACGCAGAGGGGGACCCGATCGATCCCCGACTTGAGCATCCCGCCCCTCTGGCCGGCTAAGC
* * *
12581873 ACACGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
453 ACACGCACGCTCATTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGG
12581938 AGATTTTACAGGTTTG
518 AGATTTTACAGGTTTG
** * *
12581954 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAAT
1 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTATCAAAAAAAT
*
12582019 TTTAAAAATTCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-GTC-T-TGCCA
66 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAGTCGTATGCCA
***
12582081 TGAAACTTAACGTGAAGGCTTAAGGGACCGTTGTACGAATTTACAAGCCATAAAAATGGCATTGG
131 TGAAACTTAACGTGAAGGCTTAAGGGAAAATTGTACGAATTTACAAGCCATAAAAATGGCATTGG
* * *
12582146 CATGCAGAAATAT-GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
196 CACGCAAAAATATCG-AGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCAT
* **
12582210 CCCGTCTCTCTAGCCGGCGTAGTACCTGCCCGCCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTA
260 CCCGTCTCTCTAGCCGGCGTAGTACCTGCCCGCCCGCCCGCCCACTCGTTTCATCAGTTGGCTTA
* * *
12582275 GGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGAATCGAGGGTTGTGACAGTAGGATCGGT
325 GGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGATC---
12582340 AACA-AC-CAGAGGGGGACCCGATCGATCCCCGACTTGAGCATCCCGCCCCTCTGGCCGGCTAAG
387 AACACACGCAGAGGGGGACCCGATCGATCCCCGACTTGAGCATCCCGCCCCTCTGGCCGGCTAAG
* * *
12582403 CCCCCGCACGCTCATTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAACCATACG
452 CACACGCACGCTCATTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACG
12582468 GAG
517 GAG
12582471 TTCAATCCCA
Statistics
Matches: 469, Mismatches: 44, Indels: 13
0.89 0.08 0.02
Matches are distributed among these distances:
530 1 0.00
531 348 0.74
532 2 0.00
533 1 0.00
534 7 0.01
536 110 0.23
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (533 bp):
CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTATCAAAAAAAT
TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAGTCGTATGCCA
TGAAACTTAACGTGAAGGCTTAAGGGAAAATTGTACGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAAAAATATCGAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATC
CCGTCTCTCTAGCCGGCGTAGTACCTGCCCGCCCGCCCGCCCACTCGTTTCATCAGTTGGCTTAG
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGATCAACA
CACGCAGAGGGGGACCCGATCGATCCCCGACTTGAGCATCCCGCCCCTCTGGCCGGCTAAGCACA
CGCACGCTCATTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGA
TTTTACAGGTTTG
Found at i:12582472 original size:26 final size:26
Alignment explanation
Indices: 12582436--12582486 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12582426 TTGACTTAGG
* *
12582436 CATACGGAGTTCATTCCTAGTCTAAC
1 CATACGGAGTTCAATCCCAGTCTAAC
12582462 CATACGGAGTTCAATCCCAGTCTAA
1 CATACGGAGTTCAATCCCAGTCTAA
12582487 GATCAGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCAATCCCAGTCTAAC
Found at i:12583376 original size:26 final size:26
Alignment explanation
Indices: 12583340--12583392 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12583330 GTTGACCTAG
*
12583340 GCATACGGAGTTCATTCTCC-GTCTAA
1 GCATAAGGAGTTCATTC-CCAGTCTAA
12583366 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12583392 G
1 G
12583393 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:12584274 original size:26 final size:26
Alignment explanation
Indices: 12584244--12584296 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12584234 GTTGACTTAG
12584244 GCATACTA-AGTTCATTCCCAGTCTAA
1 GCATAC-AGAGTTCATTCCCAGTCTAA
12584270 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12584296 G
1 G
12584297 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12584297 original size:904 final size:901
Alignment explanation
Indices: 12581952--12589154 Score: 9281
Period size: 905 Copynumber: 8.1 Consensus size: 901
12581942 TTTACAGGTT
* * *
12581952 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCAAAAA
* *
12582017 ATTTTAAAAATTCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG-AAA--A--CGTCTT
65 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
12582077 GCCATGAAACTTAACGTGAAGGCTTAAGGGACCGTTGTACGAATTTACAAGCCATAAAAATGGCA
130 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12582142 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
195 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
12582207 CATCCCGTCTCTCTAGCCGGCGTAGTACCTGCCCGCCCGCCCGCCCGCTCGTTTTGTCAGTTGGC
260 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
12582272 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATC-GAATCGAGGGTTGTGACAGTAGGAT
325 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTGCGACAGCAGGAT
* * * * *
12582336 CGGTAACAAC-CAGAGGGGGACCCGATCGATCCCCGACTTGAGCATCCCGCCCCTCTGGCCGGCT
389 CGGCAGC-ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
12582400 AAGCCCCCGCACGCTCATTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAACCAT
453 AAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * **
12582465 ACGGAGTTCAATCCCAGTCTAAGATCAGATCGGACCGAGCGTTGCGACAGCACATGCTGGGCTCG
518 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCG
* * ** * *
12582530 GGCATGTGTTGGTGCCGCT-TTTTTCTTCGCCTAGGCACCATCGTCGGAGCATCGTCGAAGAACC
583 GGCATGTGCTGGTGCCG-TATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACC
* * *
12582594 TGACCGGCGGCATTGGGGTTTCGGCGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
647 TGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGTGAT
* *
12582659 GGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCC
711 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
12582724 CCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGG
776 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
12582789 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
841 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
12582850 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* *
12582915 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTTGAAAAATCATGAAAAATAAAAAACGAGTCGTC
65 ATTTTAAAAAATCCCGAACCGTAAAAAG--TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12582980 CTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
128 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12583045 CATTGGCACACAGAGATATGAAGTTGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTG
193 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * ** * * * *
12583110 TGCATCCCGTTTCTTTGGCCGACATAGTGCCCGGCCATCCGTCCGACCGCTCGTTTTGTCGGTCG
258 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * ** *
12583175 GCGTAGGCATACAGAGTTCATT-CCATGTCTAAGATCGGACCGGATTGAGGGTTGTGGTAGCAAG
323 GCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGG
* * * * * * * * *
12583239 ATTGACAGCACACAGAGGGGGACCTGGCCGATCCCCGACCTACGCATCCCGCCCCTCTGGTCGG-
387 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
** * * * *
12583303 TAGAGTACCCGCAGGCTTGTTTTGTGGGTTGACCTAGGCATACGGAGTTCATTCTCC-GTCTAAG
452 TA-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CCAGTCTAAG
* *
12583367 CATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGGGC
515 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGC
* * * *
12583432 TCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCATCAGA-AG
580 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA-
* * *
12583496 ACCTAACCGGCGGCATTGGGGTTTCGACGATCGGGCCGGCCGGGTGGGTGTGCGCACATGATGTG
644 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGG-GGGTGTGCGCACATGATGTG
*
12583561 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
707 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12583626 ACCCCCTTGAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
772 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12583691 GGGAACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
837 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
12583756 TGCATGCCAACAAAAATACAAGGATCACATCTATTAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
*
12583821 TTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
66 -TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
12583886 GCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCA
130 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
12583951 TTGTCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATTGATCCACGGCTTGTG
195 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
12584016 CATCCCGTCTCTCTAGCCGACGTAGTGCCCACCCACCCGCCCACCCGCTCATTTCGTCGGTTGGC
260 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
12584081 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGCAGCAGGATT
325 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGATC
* * * * *
12584146 GGTAGGACGCAGAGGGGGACTCGACC-ATTCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTA
390 GGCAGCACGCAGAGGGGGACCCGACCGA-TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTA
* * * **
12584210 AACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACTAAGTTCATTCCCAGTCTAAGCATA
454 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* ** *
12584275 CAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCT-GCACTTGCTGGGCTCG
519 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG-TAGCACATGCTGGGCTCG
* * * ** *
12584339 GGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGACCATCACCGGAGAACTT
583 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
** *
12584404 GACCGGCGGCATTGGGGTTCAAACGATC-GGGGGCCGGGGGGTGTGCGCACTTGATGTGTGATGG
648 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGG
* *
12584468 GTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCACTCATCAAACCTCAAGAACTCACACCCCC
713 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
12584532 TTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGAC
778 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
12584597 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
843 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
12584656 TGCATGCCGTA-AAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAAAA
1 TGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAA
* * * * *
12584720 AATTTAAAAAAATCTCAAACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
64 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12584785 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGC
129 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12584850 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
194 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * ** * * *
12584915 GCATCCTGTCTCTCTAGCCGGCGTAGT----GCTCGCCCGCCTGTCCATTTGTTTCATCGGTTGC
259 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * * *
12584976 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAATGAGTGTTACGAAAGTAGGGT
324 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGAT
* * * * ** * * *
12585041 CGGCAGCACGAAGAGGGGAACCCAATCGATCCTTGGCTTGCACATCCTGCCCCTCTGGCCGGCTG
389 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTA
* * * *
12585106 AGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTAAGCATA
454 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
12585171 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
519 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGG
* **
12585236 TCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTTGGAGCAACGTCGGAGCATCGT
584 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC------G---C--CGGAGCATCGT
* * * *
12585301 CGGAGAACCTGACCGGCGGTATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGGGTGGGCACAT
638 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACAT
*
12585366 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGA
701 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
12585431 ACTCACACCCCCTTGAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
766 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
12585496 TGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTAAGCTGAATT
831 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
12585561 TTTTTG
896 TTTTTG
12585567 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC--AAAA
* * * * * * *
12585632 AATTTTAACAAATCCCTAATCGCAAAATGTTTCTAAAATCATGAAAAATAGAAAACGAGTTGTCT
64 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
12585697 TCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
129 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12585762 ATTGGTACGTAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
194 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
12585827 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCACCCGCCCGCCTGTACGTTCATTTCGTCGA
259 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC----CGCTCGTTTCGTCGG
* * ** *
12585892 TCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGC-AGTAGC
320 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGA-CAGC
* * * * * * ** * *
12585956 AGGATCGGCAAG-ATGCA-AAGGGGACCCGATCGATTCTCGCCTTATGCATCTCGCCCCTCTGAC
384 AGGATCGGC-AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
12586019 CGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
448 CGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
12586084 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCACATACTGG
513 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGG
* * * *
12586149 GCTCGGGCATGTGCTGGTGTCGTATTTTTC--C-TC---G---C-T----TGAGCATCGCCGAAG
578 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * *
12586200 AACCTGACCGACGGCACTGGGGTTCCGACTATCGGGGGGGCCGAGGAGGTGTGCACAAATGATGT
643 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGT
* * * *
12586265 GCGATGGGTTCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCA
706 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12586330 CACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCTGTTGCCATTAAAGTGTCTGAAA
771 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12586395 TGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACATCGAGTTTTTAGCTGAACTTTTTT
836 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
12586460 A
901 G
* * * * * ** **
12586461 TGCCTGCCAATAAAAATACATGGATCACGGCTACCAAGTTTGGAGCCAAAACTAATTTTGAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAA
*
12586526 ATTTTAAAAAATCCCGAACC-TCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
65 ATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
12586590 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
129 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
12586655 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
194 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
12586720 GCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCTCGCCCCCCCGCCCGCTCGTTTCGTCGATTGG
259 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
12586785 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGAT
324 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGAT
* * * * * * * * ** *
12586850 CAGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTACGCATACCACCCCTCTAGTCAACTG
389 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTA
* * * *
12586915 AGCGCCCGCATGCTCGTTTCATGGGTTAACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
454 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * *
12586980 CGGAATTCATTCTCAGTCTAAGAT-TGAACCAGACCAAGGGTTTCCGGTAGCACATGCTGGGCTC
519 CGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGG-TTGCGGTAGCACATGCTGGGCTC
* * *
12587044 AGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCG-CTGGAGAAC
582 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAGAAC
* * *
12587108 CTGACCGGCGGCATTGGGGTCCCGACGATCTGGGGAGCCGGGGGGGTGTGCTCACATGATGTGTG
646 CTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGTG
* *
12587173 ATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACAT
709 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
12587237 CCCCTTAAAGCGCGTTTGAGATTTTCCAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
774 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
** *
12587302 GGACACTTTTTTCAAAATGGTCACAAAATCTTACACACTTCGAGTTTTTAGCTAAATTTTTTTG
839 GGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
12587366 TGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGG-------------C------
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
12587412 ---TAAAAAATCCTGAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCATCTTG
66 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
12587474 CTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCAT
131 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
12587539 TGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATTCACAGG-TTGCG
196 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGCTTGCG
* * *
12587603 CATCCCGTCTCTCTGGTCGGTGTAGT--------GCCTGCCCGCCCGCTCGTTTCGTCGGTTGGC
260 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * * * *
12587660 CTAGGCATATGGAGTTCATTCTGAGTCTAAGATTGGACCGGACCGAGAGTTGCGACAGCAGCATC
325 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGATC
* * * * *
12587725 AGCAGCACGCAGAGGGGGACCCGACCGATACCCGACTTGCGCATCCCGCCCTTCTGGTCGGCTAA
390 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAA
* * * *
12587790 GCGCCTGCACGCTCATTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAG--T---C-TA-
455 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* *
12587848 --AG---------A-TC---G---A-ACCAGACCGAGGGTTGCGGTAGCACATGTTGGGCTCAGG
520 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGG
* * ***
12587894 CATGTGCTGGTGCTGCATTTTTCTTCGTCAAAGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
585 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
* * * * *
12587959 CCGGCAGCATTAGGGTTCTGACGATCGAGGGGGCCGGGGGGTGTTCACACATGATGTGTGATGGG
650 CCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGG
* * * *
12588024 GGCTGGTACTTAGCCCTTATAGTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCCT
714 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
12588089 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTTAAGAGTTTGAAATGGGGACA
779 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
12588154 CCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
844 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
12588212 TGCATGCCAACAAAAATACAAGTATCATGTCAACCAAGTTTGGGGGCAAAAATCCTTCCAAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * ** * *
12588277 ATTTTAAAAAATCCCGATCCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTT
65 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
12588342 GCCATGAAACTTCA-GAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
130 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
12588406 TTGACATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCTTATCGATCCACGACTTGCG
195 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12588471 CATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCATAGGTTGGC
260 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
12588532 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGA-TCGAGGGTTGCGACAGCAAGAT
325 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTGCGACAGCAGGAT
* * * * *
12588596 CTGCAGCATGCAGATGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTG
389 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTA
* * * * * * *
12588661 AGCGCCTGTACACTCGTCTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCGTA
454 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
12588726 CGGAGTTCATT-CCAGTCTAAGATCAGACTAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGG
519 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGG
* * * *
12588790 GCATGTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCTCTGGAGCATCGTCGGAGAACTTG
584 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
* * * *
12588855 ACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGG
649 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGG
** *
12588920 GTGCTTTTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
713 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
12588985 TTAAAAAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
778 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
12589050 ACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTT
843 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
12589109 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
12589155 ATACGGAGTT
Statistics
Matches: 5491, Mismatches: 673, Indels: 283
0.85 0.10 0.04
Matches are distributed among these distances:
846 137 0.02
847 212 0.04
848 13 0.00
852 1 0.00
855 2 0.00
856 1 0.00
859 1 0.00
865 1 0.00
867 1 0.00
868 129 0.02
869 64 0.01
872 184 0.03
874 181 0.03
877 1 0.00
878 2 0.00
881 2 0.00
882 196 0.04
883 2 0.00
888 2 0.00
889 80 0.01
890 134 0.02
891 44 0.01
893 228 0.04
894 296 0.05
895 2 0.00
896 280 0.05
897 366 0.07
898 82 0.01
900 425 0.08
901 65 0.01
902 8 0.00
903 6 0.00
904 606 0.11
905 658 0.12
906 290 0.05
907 41 0.01
909 8 0.00
910 57 0.01
911 203 0.04
912 211 0.04
913 1 0.00
916 11 0.00
917 1 0.00
919 183 0.03
920 71 0.01
921 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGATCG
GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
Found at i:12585169 original size:26 final size:26
Alignment explanation
Indices: 12585140--12585192 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12585130 GTTGACTTAG
* *
12585140 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12585166 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12585192 G
1 G
12585193 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12586095 original size:26 final size:26
Alignment explanation
Indices: 12586059--12586111 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12586049 GTTGACTTAG
12586059 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12586085 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12586111 G
1 G
12586112 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12586979 original size:26 final size:26
Alignment explanation
Indices: 12586949--12587001 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12586939 GTTAACTGAG
*
12586949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
12586975 GCATACGGAATTCATTCTCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
12587001 G
1 G
12587002 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:12589205 original size:26 final size:26
Alignment explanation
Indices: 12589155--12589205 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12589145 AGTTTGGGGC
*
12589155 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGGAGTTCATTCCAAGTCTAAGG
* *
12589181 ATACGGAGTTCATTCTAAGTTTAAG
1 ATACGGAGTTCATTCCAAGTCTAAG
12589206 ATCAAACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCAAGTCTAAGG
Found at i:12590960 original size:26 final size:26
Alignment explanation
Indices: 12590909--12590961 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12590899 GTTGACTTAG
* * *
12590909 GCATACGAAGTTCTTTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
*
12590935 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
12590961 G
1 G
12590962 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:12591070 original size:185 final size:185
Alignment explanation
Indices: 12590750--12591148 Score: 455
Period size: 185 Copynumber: 2.2 Consensus size: 185
12590740 GTTGGCTTAG
* * * *
12590750 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACATGACTAAGGGTTGCAACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGCCTAAGATTGGACATGACCAAGGGTTACAACAGCAAGATCGACA
* * * * *
12590815 GCACCCAGAGGGGGACCTGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTAGGCGC
66 GCAACCAGAGGGGGACCTGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCAGCTAGGCAC
* * *
12590880 CCGCACGCTCATTCCGTGGGTTGACTTAGGCATAC-GAAGTTCTTTCCCT-GTCTAA
131 CCGCACGCTCATTCCATCGGTTGACTTAGGCATACAG-AGTTCATT-CCTAGTCTAA
* ** * **
12590935 GCATACGGAGTTCATTCCCAGCCTAAGATTGGACCA-GACCGAGGGTTACGGCAGTAAGATCGGT
1 GCATACGGAGTTCATTCCCAGCCTAAGATTGGA-CATGACCAAGGGTTACAACAGCAAGATCGAC
* ** * **** * *
12590999 GGCAAGTAGAGGGGGACCTGACCGATCCCCGACTTGCACATCTCGTTTTTCTGGCC-GGTTGAGC
65 AGCAACCAGAGGGGGACCTGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCAGCTAG-GC
* *
12591063 ACCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
129 ACCCGCACGCTCATTCCATCGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
*
12591120 GCATACGGAGTTCATTCCCAGGCTAAGAT
1 GCATACGGAGTTCATTCCCAGCCTAAGAT
12591149 CAGACTGGAT
Statistics
Matches: 179, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
184 6 0.03
185 170 0.95
186 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGCCTAAGATTGGACATGACCAAGGGTTACAACAGCAAGATCGACA
GCAACCAGAGGGGGACCTGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCAGCTAGGCAC
CCGCACGCTCATTCCATCGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
Found at i:12591124 original size:26 final size:26
Alignment explanation
Indices: 12591094--12591146 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12591084 GTTGACTTAG
* *
12591094 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGGCTAA
*
12591120 GCATACGGAGTTCATTCCCAGGCTAA
1 GCATACAGAGTTCATTCCCAGGCTAA
12591146 G
1 G
12591147 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGGCTAA
Found at i:12592713 original size:26 final size:26
Alignment explanation
Indices: 12592683--12592735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12592673 ATTGACTTAG
*
12592683 GCATACGGAGTTCATTCCTAGGCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
*
12592709 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
12592735 G
1 G
12592736 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:12593228 original size:26 final size:26
Alignment explanation
Indices: 12593192--12593244 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12593182 GTTGATTTAG
12593192 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
* *
12593218 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
12593244 G
1 G
12593245 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:12594115 original size:26 final size:25
Alignment explanation
Indices: 12594085--12594136 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
12594075 GTTGACTTAG
12594085 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCC-GTCTAA
12594111 GCATACGGAGTTCATTCCCGTCTAA
1 GCATACGGAGTTCATTCCCGTCTAA
12594136 G
1 G
12594137 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCGTCTAA
Found at i:12595024 original size:25 final size:26
Alignment explanation
Indices: 12594973--12595024 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12594963 GTTGACTTAG
12594973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12594999 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12595024 G
1 G
12595025 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12595103 original size:888 final size:879
Alignment explanation
Indices: 12593072--12595176 Score: 2746
Period size: 888 Copynumber: 2.4 Consensus size: 879
12593062 CTAGCAGGAT
* * * * * * * * *
12593072 CAAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCTACCGATCCCTGACTTGTGCA
1 CAAGGGTTATGGCTGCAGGATAGGAAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGTGCA
* *
12593137 TCCCACCCCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGATTTAGGCATACGGAG
66 TCCCGCCCCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
12593202 TTCACTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACTG-GACGTTG
131 TTCATTCCCAGTCTAAGCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAG-GGTTG
12593266 CAACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCTGCATTGTTCTTCACCGGGGCACTATCGC
194 C-ACAGCACATGCTGGGCTTGGGCATGTGCTGGTGC-GCATTGTTCTTCACCGGGG--C-A----
* * * **
12593331 CGGAGCATCGTCGGAGAACCTGTCCGACGGCATTAGGGTTCTGGCGATCGGAGGGGCCGGGGGGG
250 C----CATCGTCCGAGAACCTGACCGACGGCATTAGGGTTCCGAAGATCGGAGGGGCCGGGGGGG
*
12593396 TTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCAT
311 TTGTGCGCACATGATGTACGATGGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCAT
12593461 CAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTAAAGGTTTGCTACCAGTAGC
376 CAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTAAAGGTTTGCTACCAGTAGC
* * * *
12593526 CATTAAAGTGTTTAGAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
441 CATTAAAGTGTCTAAAATAGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
12593591 TTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC
506 TTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCC
*
12593656 AAAACTCCTTCCGAAAAAATTTTAAAAAATATCGAACCAGAAAAAGTTTCAAAAATCATGAAAAA
571 AAAACTCCTTCCGAAAAAATTTTAAAAAATATCGAACCACAAAAAGTTTCAAAAATCATGAAAAA
*
12593721 TAAAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGAATGAATTTA
636 TAAAAAACGAGTCACCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGAATGAATTTA
**
12593786 CAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACT
701 CAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACACT
* * * *
12593851 ATCGACCCACGGCTTACGCATCTCGTCTCTCTGGCTGGCATAGTGCCTGCCCGCTTGTTTCGTCG
766 ATCGACCCACGACTTACGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCGCTCGTTTCGTCG
* *
12593916 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAAGCTGAAC
831 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAACCAGAAC
** * * *
12593965 CAAGGGTTACAG-TAGCAGGATTGGTAGCACGCAGAGGGGGACTCGA-TCGATCCCCGGCTTGTG
1 CAAGGGTTATGGCT-GCAGGATAGGAAGCACGCAGAGGGGGACCCGACT-GATCCCCGGCTTGTG
* *
12594028 CATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
64 CATCCCGCCCCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
12594093 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCGTCTAAGATCAGACTGGACCGAGGGTTG
129 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTG
* * *
12594158 CCACAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCATTGTTCTTCATCGGGGCACCATTG-
194 -CACAGCACATGCTGGGCTTGGGCATGTGCTGGTG-CGCATTGTTCTTCACCGGGGCACCATCGT
** *
12594222 CCGAGAACCTGACCGGTGGCATTAGGGTTCCGAAGATCGG-GGGTCCGGGGGGG-TGTGCGCACA
257 CCGAGAACCTGACCGACGGCATTAGGGTTCCGAAGATCGGAGGGGCCGGGGGGGTTGTGCGCACA
* * * **
12594285 TGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTTGAG
322 TGATGTACGATGGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAG
* * * *
12594350 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGT
387 AACTCACACCCCCTTAAAAAGCATTTGAGATTTTAAAGGTTTGCTACCAGTAGCCATTAAAGTGT
* *
12594415 CTAAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAAT
452 CTAAAATAGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
12594480 T-TTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAA-TCCTTT
517 TGTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACTCCTTC
* * * * * * *
12594543 TGAAAAAATTTTAAAAAAT-CCTGAACCACAAAAAGTTTTAGAAATCGTGAAAAATAGAGAACGA
582 CGAAAAAATTTTAAAAAATATC-GAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGA
* * **
12594607 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAA
646 GTCACCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGAATGAATTTACAAGCCATAA
* * *
12594672 AAATGGTATTGGCACACAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
711 AAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGACCCAC
* * * *
12594737 GACTTGCGCATCCCGTCTCTTTGG-TCGACGTAGTGGCTGCCCGCCCACCCGCCCGCTCGTTTCG
776 GACTTACGCATCCCGTCTCTCTGGCT-G--GCA-TAG-T----G----CCCGCCCGCTCGTTTCG
*
12594801 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-AC
828 TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA-ACCAGAAC
** * *
12594853 TGAGGGTTATGGCTGCAGGATAGGAAGCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCA
1 CAAGGGTTATGGCTGCAGGATAGGAAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGTGCA
** * * * * * * *
12594918 TTTCGCCCCTCTGGCTGTCTGAGCACCCGTATGCCCGTTTTGTGGGTTGACTTAGGCATACGGAG
66 TCCCGCCCCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
12594983 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTA
131 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCA
* * * * * *
12595048 GTAGTACATGCTGGGCTCGGGCATGTGCTGGCGACGCATTTTTCTTCACCGGGGCACCATC-ACC
196 -CAGCACATGCTGGGCTTGGGCATGTGCTGGTG-CGCATTGTTCTTCACCGGGGCACCATCGTCC
* * * * * ** * * *
12595112 AAACAACCTGACCGACGACAATGGGGTTCCGTCGATCAG-GGGGCC-AGGGGG-TGCGCGCACAT
259 -GAGAACCTGACCGACGGCATTAGGGTTCCGAAGATCGGAGGGGCCGGGGGGGTTGTGCGCACAT
12595174 GAT
323 GAT
12595177 TTATTGCCAT
Statistics
Matches: 1060, Mismatches: 127, Indels: 55
0.85 0.10 0.04
Matches are distributed among these distances:
875 2 0.00
876 200 0.19
877 53 0.05
878 192 0.18
879 14 0.01
880 34 0.03
881 4 0.00
884 1 0.00
885 1 0.00
887 1 0.00
888 298 0.28
889 39 0.04
890 1 0.00
892 73 0.07
893 147 0.14
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (879 bp):
CAAGGGTTATGGCTGCAGGATAGGAAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGTGCA
TCCCGCCCCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCA
CAGCACATGCTGGGCTTGGGCATGTGCTGGTGCGCATTGTTCTTCACCGGGGCACCATCGTCCGA
GAACCTGACCGACGGCATTAGGGTTCCGAAGATCGGAGGGGCCGGGGGGGTTGTGCGCACATGAT
GTACGATGGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACT
CACACCCCCTTAAAAAGCATTTGAGATTTTAAAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAA
AATAGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATATCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCAC
CTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGAATGAATTTACAAGCCATAAAAATG
GTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGACCCACGACTT
ACGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGAAGTTCATTCCCAGTCTAAGATCAACCAGAAC
Found at i:12596459 original size:26 final size:26
Alignment explanation
Indices: 12596429--12596481 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12596419 GTTGACTTAG
*
12596429 GCATATGGAGTTCA-TTCCCAGTCTAA
1 GCATATGGAGTT-ATTTCCCAATCTAA
12596455 GCATATGGAGTTATTTCCCAATCTAA
1 GCATATGGAGTTATTTCCCAATCTAA
12596481 G
1 G
12596482 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTATTTCCCAATCTAA
Found at i:12597383 original size:26 final size:26
Alignment explanation
Indices: 12597333--12597383 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12597323 TGACTTAGGT
*
12597333 ATACGGAGTTCATTCCCAATTTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
*
12597359 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
12597384 ATCGGACCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:12598267 original size:26 final size:26
Alignment explanation
Indices: 12598231--12598309 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
12598221 GTTGACTTAG
12598231 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12598257 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12598283 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12598309 G
1 G
12598310 ATTGGACAGG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12599196 original size:26 final size:26
Alignment explanation
Indices: 12599162--12599212 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12599152 GTTGACTTAG
12599162 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12599188 GCATGCGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
12599213 GATCGGATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12599618 original size:902 final size:901
Alignment explanation
Indices: 12595180--12600504 Score: 7006
Period size: 900 Copynumber: 5.9 Consensus size: 901
12595170 ACATGATTTA
*
12595180 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
12595245 CATTGGCATGCAGAAATATGAAGATGTGCGTAAATCGACCTACCACCCTATCGATCCACGGCTTG
66 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
12595310 CGCATCTCGTCTCTCTGGCCGGCGTAGTG--C-CCC-CCTGCCCGCCCGCTCGTTTCCTCGGTTG
131 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * * * * *
12595371 GCTTAGGCATACGGAGTTCATTCTTAGTCTAAGATCAGATCTGACTGAGGGTTACGATAGCAGGA
196 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGA
* * * * * * *
12595436 TCAGCAACACGCAGAGAGGGACCCGACCGATCCCCGACATGCGCATCCCGCCCCTCTGGCCGGTT
261 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCGGCT
* * * *
12595501 GAGTGCCCTCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAA
326 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * *
12595566 ACGGAGTTCATTCCCAGTCTAAGGTTGAATTGGACCGAGGGTTGTGACAGCACATGCTGGGCTCG
391 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
* * *
12595631 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCTGAGCATCGTCGGAGAAACT
456 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCT
* *
12595696 GACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGAGTGGCGGTCTGCGCACATGATGTGTGA
521 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-AG-GG-GGTGTGCGCACATGATGTGTGA
*
12595761 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACC
583 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
12595826 CCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
648 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
12595891 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGC
713 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGC
* *
12595956 ATGCCAACAAAAATGCAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCCTTTCGAAAAAATT
777 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
* * * * * * *
12596021 TTAAAAAGTCCCGAATCGTAAAAAGTTTCAAAAATCGTGACAAGTAGAAAACAAGTCGTC
842 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12596081 TTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
12596146 CATTCGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
66 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * *
12596211 CGCATCCCGTCTCTCTGGAGGGCGTAGTGCCCGCCCGCCCGCCCACCCGTTCGTTTCGTCGGTTG
131 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * *
12596276 GCTTCGGCATACGAAATTCATTCCCAGTCTAAGATCAGGCCGGATCGA-----A-GGTTGC---A
196 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGA
** * * *
12596332 ---GCAGCACGCAGAGGGGGACCCGATTGATCCTCTGCATGCGCATCCAGCCCCTCTGGCCGGCT
261 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCGGCT
* * * *
12596394 GAGTGCCCGCATGCTCGTATCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCAT
326 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
12596459 ATGGAGTT-ATTTCCCAATCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTC
391 ACGGAGTTCA-TTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
** * * **
12596523 GGGCATGTGCTGGTG--GTACTTTTTTCTTCACCGGGGCACCATCGCCGGAGCATTGCCAAAGAA
455 GGGCATGTGCTGGTGCCGTA--TTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAA
* * * * * * *
12596586 CCT-AGCCGACGGCATTGCGGCTCTGGCGATCGGGGGGGCCGGGGGGTGTACGCACAAGATGTGT
518 CCTGA-CCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGTGTGCGCACATGATGTGT
* *
12596650 GATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACA
581 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
12596715 CCCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATG
646 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12596780 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATGTTTTTGT
711 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGT
* *
12596845 GCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
775 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* *
12596910 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTC
840 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
**
12596972 TTGCCATGAAACTTCAC-TGAAGGCTTAAGGGACCATTACATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12597036 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGTTCCACGGCTTG
66 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * * *
12597101 CGCAACCTGTCTCTCTGGCCGACGCAATGCCCACCTGCCCGCCCGGCCACTCATTTCATCGGTTG
131 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** * * **
12597166 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCAAGGGTTACGACAGCAGGA
196 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGA
* * * * *
12597231 TTGGCAGCACGTAGAGGAGGACTCGACCGATCCCCGGCTTCCGCATCCCA-CCCCTCTGGCCGGC
261 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCAGCCCCTCTGGCCGGC
* * *
12597295 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGTATACGGAGTTCATTCCCAATTTAAGCA
325 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* ** * * * * *
12597360 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGCTT-CCAGTAGAACATGCTGGGCT
390 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCT
* * * *
12597424 CGGGCATGTACTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGCCGGAGAAC
454 CGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAAC
* * * * * * *
12597489 CTAATCGATGGCATTAGGGTTCCGATGATCGGGGGG-CTGGGGGTGTGTGCACATGATGTGTGAT
519 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGTGAT
* * ** * *
12597553 GGGTGCTGGTACTCGACCCTTACGTTGGCCCCCTATCCCTCATCAAACCTTGAGAAGTCACACCC
584 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
12597618 CCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTACAAGTAGCCATTAAAGTGTCTGAAATGGGG
649 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
12597683 ACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGA-TTTTGTAGCTGAATTTTTTGTGCA
714 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT-TAGCTGAATTTTTTGTGCA
* * * *
12597747 TGCCAACAAAAATACAGGGATCACAGCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
778 TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
** *
12597812 TAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTC
843 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12597871 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
12597936 CATTGGCACATAGAAAGATGAAGATGTGCCTATAA-CCACCTACCACCCTATCAATCCA-GGACT
66 CATTGGCACACAGAAATATGAAGATGTGCCTA-AACCCACCTACCACCCTATCGATCCACGG-CT
* * * *
12597999 TACGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGT
129 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
12598064 TGGCTTATGCATATGGAGTTCATTCCCAGTCAAAGATCAGACCAGACCGAGGGTTGTGGTAGCAG
194 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAG
** * * * * * *
12598129 GATCGGCAGCATACAGAGGGGCACCCAACCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCAG
259 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCGG
* *
12598194 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
324 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*
12598259 ATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACAGGATCG
389 ATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A-TC-------GGAC-----CG
* * * *
12598324 AGGGTTGCGGCAGCACATGTTGGGCTCGAGCATGTGCTGGAGCC-TCATTTTTCTTCGTCGGGGC
428 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT-ATTTTTCTTCGTCGGGGC
* * * * ** * *
12598388 ACCATCGTCGGAGCATCACCGGAGAACATGACCGGTGACATTGGGGTTCCGACGATCGGGGGGGT
492 ACCATCGCCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGC
* * *
12598453 CGGGGAGGTGTGCGCACATAATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTAT
556 CAGGG-GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
12598518 CCCTCATCAAAACTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
620 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
12598583 CAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTAAACA
685 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
12598648 TC-ATGTTTTTAGCTGACTTGTTTTGTGCATGCCAACAAGAAA-ACAAGGATCACGTCTACCAAG
750 TCGA-GTTTTTAGCTGAATT-TTTTGTGCATGCCAACAA-AAATACAAGGATCACATCTACCAAG
* * *
12598711 TTTGGGGCCAAAAATCCTTTCGAAAAACTTTTAAACAAATCTCGAACTGTAAAAAGTTTCAAAAA
812 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA-AAATCTCGAACCGTAAAAAGTTTCAAAAA
*
12598776 TCATGAAAAATAGAAAAGGAGTCGTC
876 TCATGAAAAATAGAAAACGAGTCGTC
* *
12598802 TTGCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
12598867 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTG
66 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
**
12598932 CGCATCTTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
131 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
12598997 GCTTAGGCATATGGAGTTTATTCCCAGTTTGAGATCAGATCAGACTGAGGGTTATGGTAGCAGGA
196 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGA
* * * *
12599062 TCGACAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
261 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCGGCT
* *
12599127 GAGTGCCCGCACGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
326 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * *
12599192 GCGGAGTTCATTCCCAGTCT-AGATCGGATTGGACCTAGGGTTGCGATAGCGCATGCTGGGCTCG
391 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
* * * *
12599256 AGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGTCAGAGCATCGCTGGAGAACCT
456 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCT
* * * * * * * *
12599321 GACCTG-CTGCATTGGAGTTTCGACGATCGGAGGGCCCGTGGGTGTGCACACATGATGTGCGATG
521 GACC-GACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATG
* * **
12599385 GGTGCTGGTACTTGGCCCTTATATTGGCACCGTATCCCTCATCAAACCTTAAGAACTCACACCCC
585 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * * *
12599450 CTTTAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATAGGAA
650 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
12599515 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTTCAA
715 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCAT
12599580 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
779 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
12599645 AAAAAATCTCGAACC-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
844 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12599702 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
12599767 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGACTTG
66 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * * * * * *
12599832 CGCAACCTATCTCTCTAGCCGACGCAGTGCCCACCTGCCCACCCGCCCACTCATTTCGTCGGTTG
131 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
12599897 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGG---TCGCAACAGCA
196 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGA
* * * ** * *
12599959 --GGCAGCACGCAGAGGGGGACCTGGCCAATCCCCTACTTACGCATCCAGCCCCTCTGGCCGGTT
261 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCGGCT
* * * * ** *
12600022 GAGCACCCGTACGCTCGTTTCGTGAGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAAGCAT
326 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* ** * * *
12600087 ACGGAGTTCATTCCCAGTCTAATATCAAACCAGACCGAGGGTTACAGTA-A-CACATGCTGGGCT
391 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC-G-ACAGCACATGCTGGGCT
* * * * *
12600150 CGGGCATCTGTTGGTGCCGTATTTTTCTTC-ACTGGGGCACCATCGTCAGAGCATCGTCGGAGAA
454 CGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGGCACCATCGCCAGAGCATCGCCGGAGAA
* *
12600214 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCACACATGATGTGCG
518 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-AGGGGGTGTGCGCACATGATGTGTG
** *
12600279 ATCAGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
582 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
12600344 CCCCTTAAAGAGCATTTGAGATTTTACTGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGG
647 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
12600409 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTGTTTTGTG
712 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTG
*
12600474 CATGCCAACAAAAATACAAGGATCACGTCTA
776 CATGCCAACAAAAATACAAGGATCACATCTA
12600505 AACCAGCGGG
Statistics
Matches: 3865, Mismatches: 476, Indels: 170
0.86 0.11 0.04
Matches are distributed among these distances:
890 196 0.05
891 336 0.09
892 4 0.00
893 242 0.06
894 8 0.00
895 129 0.03
896 122 0.03
897 236 0.06
898 1 0.00
899 155 0.04
900 784 0.20
901 172 0.04
902 484 0.13
903 17 0.00
904 109 0.03
905 64 0.02
909 4 0.00
913 1 0.00
914 1 0.00
916 1 0.00
917 1 0.00
921 2 0.00
926 98 0.03
927 8 0.00
928 6 0.00
929 185 0.05
930 75 0.02
931 422 0.11
932 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGA
TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCGGCT
GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCT
GACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGC
CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAA
AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
Found at i:12601216 original size:25 final size:26
Alignment explanation
Indices: 12601182--12601233 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
12601172 CCGGTTCGAT
12601182 CTTAGACTGGGAATGAACTC-GTATG
1 CTTAGACTGGGAATGAACTCTGTATG
12601207 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
12601233 C
1 C
12601234 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12602863 original size:26 final size:26
Alignment explanation
Indices: 12602825--12602877 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12602815 CCTATCCGAT
*
12602825 CTTAGATTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
12602851 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
12602877 C
1 C
12602878 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12603104 original size:902 final size:899
Alignment explanation
Indices: 12601207--12603419 Score: 3251
Period size: 902 Copynumber: 2.5 Consensus size: 899
12601197 AACTCGTATG
* * *
12601207 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCTGGCGGG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGC-GG-GGG
* * * * *
12601272 CAGGCACTACCCCT-GCTAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGCTAGGTGTG
64 CAGGCACTA-CGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
12601336 TTTAGGCACATCTTCATATTTTCTGCCTGCCAATGCCATTTTTATGGCTTGTGAATTCATACAAT
128 TTTAGGCACATCTTCATATTTT-TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
12601401 CGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTT
192 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * *
12601466 TGAAACTTTTTGTGGTTCGGAGATTTTTTAAATTTTTTC-GGAAGAAGTTTTGGTCTCAAACT--
257 TGAAACTTTTTGCGGTTCGG-GATTTTTTAAA-ATTTTCACGAAGGAGTTTTGGCCCCAAACTGG
*
12601528 TAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTAC
320 TAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
12601593 AAGATTTTGTGACTATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAA
385 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAA
* *
12601658 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATATGGG
450 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
12601723 GCCAATATAAGGGGCAAGCACCAGCACCAATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
515 GCCAATATAAGGGCCAAGCACCAGCACCAATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * * **
12601788 GATCATCGTAACCCTAATGTCGTCGGTCAGGTTCTCAGACGATGCTCTGACGATGGTGCCCCGAC
580 GATCATCGGAACCCCAATGCCGCCGGTCACATTCTCAGACGATGCTCTGACGATGGTGCCCCGAC
* * * * * * *
12601853 GAAGAAAAATGCGGCACCAGCACATGCCCTAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGT
645 GAAGAAAAATGCAGCACCAACACATGCCCAAGCCCAGCATGTGCTACCGCAACACTCGGTCTGAT
* * *
12601918 CCGATCGTAGGCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
710 CCGATCGTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
**
12601983 AACCCATGAAACGAGCGTACGGGCACTCAGTTGACCAGAGGGGCGGGATGCCCAAATCAGGGATC
775 AACCCATGAAACGAGCGTACGGGCACTCAGCAGACCAGAGGGGCGGGATGCCCAAATCAGGGATC
* * ** * * * * * ** * *
12602048 GGTTGGGTCCCCCTCTGTGTGTTGTCGATCCTGCTGCTGCAACCCTCGGTCCGATCCGAT
840 GATCGGGTCCCCCTCTACGTGCTGCCAATCCTACTACCACAACCCTCAGTCCGATCCAAT
12602108 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGG-GGC
* *
12602173 TTGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 -AGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
12602238 TTAGGCACATTTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
12602303 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTG
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
12602368 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTCACGTAAGGAGTTTTGGCCCCAAACTTGGTA
259 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTCACG-AAGGAGTTTTGGCCCCAAAC-TGGTA
* *
12602433 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAGGTGTACAA
322 GACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
12602498 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAAC
12602563 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
12602628 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCTCGGGCCCCCCGA
517 CAATATAAGGGCCAAGCACCAGCACCAATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGA
* * * **
12602692 TCGTCGGAACCCCAATGCCGCCGGTCACATTCTCCGGCGATGCT-TCGACGATGGTGCCCCGGTG
582 TCATCGGAACCCCAATGCCGCCGGTCACATTCTCAGACGATGCTCT-GACGATGGTGCCCCGACG
*
12602756 AAGAAAAATGCAGCACCAACACATGCCCAAGCCCAGCATGTGCTACTGCAACACTCGGTCCT-AT
646 AAGAAAAATGCAGCACCAACACATGCCCAAGCCCAGCATGTGCTACCGCAACACTCGGT-CTGAT
* * * *
12602820 CCGATCTTAGATTAGGAATGAACTCCATATGCTTAGACTGGGAATTAACTCCGTATGCCTAAGTC
710 CCGATCGTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
** * * * *
12602885 AACCCACT-AAACGAGCGTACGGGTGCTCAGCAGGCCAGAGGGGTGGGATGCGCAAGTC-GGGTA
775 AACCCA-TGAAACGAGCGTACGGGCACTCAGCAGACCAGAGGGGCGGGATGCCCAAATCAGGG-A
* * *
12602948 TCGATCGGGTCCCCCTCTACGTGCTGCCAATCCTACTACCACAACCCTCAGTCTGGTTCAAT
838 TCGATCGGGTCCCCCTCTACGTGCTGCCAATCCTACTACCACAACCCTCAGTCCGATCCAAT
* * * *
12603010 CTTAGACCGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAACGAGCAGGCGGGCAGGTGGG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGC-GG-GGG
* * *
12603075 CGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGAAGGTGGGT
64 CAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
12603140 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
12603205 TCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
12603270 AAACTTTTTGCGGCTT-GGGATTTTTTAAAATTTTTTCA-GAAGGATTTTTGGCACCAAACGTGG
259 AAACTTTTTGCGG-TTCGGGATTTTTTAAAA--TTTTCACGAAGGAGTTTTGGCCCCAAAC-TGG
* * * *
12603333 TAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAACAAATTCAGCTAAAAACTCAAAGTGTAC
320 TAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
12603398 AAGATTTTGTGACCATTTGAAA
385 AAGATTTTGTGACCATTTGAAA
12603420 GTTTCATGGC
Statistics
Matches: 1186, Mismatches: 109, Indels: 33
0.89 0.08 0.02
Matches are distributed among these distances:
898 5 0.00
899 13 0.01
900 144 0.12
901 134 0.11
902 639 0.54
903 244 0.21
904 7 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGGGCA
GGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTCACGAAGGAGTTTTGGCCCCAAACTGGTAGACA
TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGCACCAGCACCAATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCAT
CGGAACCCCAATGCCGCCGGTCACATTCTCAGACGATGCTCTGACGATGGTGCCCCGACGAAGAA
AAATGCAGCACCAACACATGCCCAAGCCCAGCATGTGCTACCGCAACACTCGGTCTGATCCGATC
GTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCA
TGAAACGAGCGTACGGGCACTCAGCAGACCAGAGGGGCGGGATGCCCAAATCAGGGATCGATCGG
GTCCCCCTCTACGTGCTGCCAATCCTACTACCACAACCCTCAGTCCGATCCAAT
Found at i:12603736 original size:359 final size:359
Alignment explanation
Indices: 12603072--12603778 Score: 1132
Period size: 359 Copynumber: 2.0 Consensus size: 359
12603062 GCGGGCAGGT
* *
12603072 GGGCGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGAAGGTG
1 GGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGAAGGTG
12603137 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
66 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
12603202 TGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
131 TGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATAT
* * * *
12603267 TTGAAACTTTTTGCGGCTTGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCACCAAACGTG
196 TCGAAACTTTTTACGGCTTAGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCACCAAACGTC
* * * *
12603332 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAACAAATTCAGCT-AAAAACTCAAAGTGT
261 GTAGACGTGATCCTTGTATGTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAAA-TCAAAGTGT
12603396 ACAAGATTTTGTGACCATTTGAAAGTTTCATGGCC
325 ACAAGATTTTGTGACCATTTGAAAGTTTCATGGCC
* * *
12603431 GGGCTGGCACTATGCCGGCCAGAGAGACGGGATGCGCCAGCCATGGATCGATAGGGTGGTAGGTG
1 GGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGAAGGTG
* * ** *
12603496 GGTTTTGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCCTACAA
66 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
12603561 TGGTCCCTTAAGCCTTTACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATAT
131 TGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATAT
** * *
12603626 TCGAAGA-TTTTTACGG-TTCAGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACT
196 TCGAA-ACTTTTTACGGCTT-AGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCACCAAACG
*
12603689 TCGTAGACGTGATCCTTGTATGTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAAATCGAAGTG
259 TCGTAGACGTGATCCTTGTATGTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAAATCAAAGTG
12603754 TACAAGATTTTGTGACCATTTGAAA
324 TACAAGATTTTGTGACCATTTGAAA
12603779 AAACTGTCCC
Statistics
Matches: 319, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
358 2 0.01
359 311 0.97
360 6 0.02
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (359 bp):
GGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGAAGGTG
GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATAT
TCGAAACTTTTTACGGCTTAGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCACCAAACGTC
GTAGACGTGATCCTTGTATGTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAAATCAAAGTGTA
CAAGATTTTGTGACCATTTGAAAGTTTCATGGCC
Found at i:12605861 original size:26 final size:26
Alignment explanation
Indices: 12605825--12605877 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12605815 CCAGTCTGAT
12605825 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12605851 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12605877 C
1 C
12605878 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12606745 original size:26 final size:26
Alignment explanation
Indices: 12606706--12606758 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12606696 ACGGTCTAAT
12606706 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
**
12606732 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
12606758 C
1 C
12606759 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:12606947 original size:881 final size:879
Alignment explanation
Indices: 12603430--12609283 Score: 6700
Period size: 881 Copynumber: 6.6 Consensus size: 879
12603420 GTTTCATGGC
* * ** * *
12603430 CGGGCTGGCACTATGCCGGCCAGAGAGACGGGATGCGCCAGCCATGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTACGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
12603495 GGGTTTTGGCACATCTTCATATTT-TTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCCTAC
66 GGGTTTAGGCACATCTTCATATTTCTT-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
12603559 AATGGTCCCTTAAGCCTTTACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
130 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * **
12603624 ATTCGAAGA-TTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAAC
195 -TTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAAC
* *
12603688 TTCGTAGACGTGATCCTTGTATGTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAAA-TCGAAG
259 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAG
*
12603752 TGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
323 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
12603817 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
388 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
12603882 AGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCC
453 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * * **
12603947 CCCTCAATCGTCGGAACCCAAATGTCGTCGGTCAGGTTCTCTGACGATGCTCCAATGATGGTGCC
518 CCC-CGATCGTCGGAACCC-AATGCCGTCGGTCAGGTTCTCCGACGATG-TGC--TTCTGGT---
* * * * * *
12604012 CCGACGAAGAAAAATACGGCACCAACACATGACCAAGCCCAGCATGTGCTGTCGCAACCCTCGAT
575 --GAC---GAAAAATGCGGCAACAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
12604077 CC-G--ATC-----C-------G-A-T-C--A-G---AGACTGGGAATGAACTCTC-TATGCCTA
635 CCGGTCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC-CGTATGCCTA
* * * * *
12604117 AGTCAACCCATAAAATGAGCTTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCATAAGCC-AG
699 AGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGA-
* * ** * * ** * * ** * *
12604181 GGAATGA-TCGGTTTGCCCTTTGCGTACTGTGGATCCTGCTGCCATAACCCTCACTCCGGTCTGA
763 GG-ATCAGTCGGGTCCCCCTCTGCATGTTGT-GATCCTGCTACCACAACCCTCGGTCTGGTCTAA
* *
12604245 TCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAAGAGCGGGCAGGTGGG
826 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--AA-A-C--G-A-GTGGG
* * * ** * * *
12604307 TGTGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTACGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
12604372 GGGTTTAGGCACATCTTCATA-TT-TTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
66 GGGTTTAGGCACATCTTCATATTTCTTTG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
12604435 CAATTGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
129 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
12604500 TTTTTG-AAACCTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGGTTTCGCCCCAAA
194 -TTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAA
* * *
12604564 CATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTTGAAG
258 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
12604629 TGTACAAGATTTTGTGGCAATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTTCTGGC
323 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
12604694 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTATGATGGGGGAT
388 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
12604759 AGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCCCCCGGCC
453 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * * **
12604822 ACCCCGTTCGTCGGTACCACAATGCCG-CTGGTCAGGTTCTCCGACGATACTCCAACGATGGTGC
518 -CCCCGATCGTCGGAACC-CAATGCCGTC-GGTCAGGTTCTCCGACGAT-GTGCTTC--TGGTG-
* * ** * * * *
12604886 CCCAACGAAGAAAAATGCAGCACCAACACATGTTCGAGCCCAGCTTGTGCTGCTGAAACCCTTGG
576 ----AC---GAAAAATGCGGCAACAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * ** * *
12604951 TCCAGTCCAATCTTAGACTGGGAATGAGCTCCAAATGCTTAGACTGAGAATGAACTCTGTATGCC
634 TCCGGT-C-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * *
12605016 TAAGTCAACCCATGAAACGAGTGTACGGTTGCTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCCG
697 TAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCG
* * * ** * *
12605081 GGGATC-GATCGGGTCCCCCTCTGCATGCTGTCAGTCCTGCTACCGTAACCCTTGGTCTGGTCTG
762 AGGATCAG-TCGGGTCCCCCTCTGCATGTTGTGA-TCCTGCTACCACAACCCTCGGTCTGGTCTA
* *
12605145 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
825 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGG
* * * * * *
12605200 GGGGCGAGCTCTA---C-ATC---G-G-C----T-----A---G-AGA--GA-CGGGTGGTAGGT
1 CGGGCGGGCACTACGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* ***
12605240 GGGTTTAGGCACAACTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
12605305 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGCTT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * **
12605370 TTCAGAAA-TTTTTACGGTTCGGGATTTTTTAAAATTTTTT-TGAATGGATTTTTTTGG-CCCAA
196 TTGA-AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GGA--GGTTTGGCCCCAA
* * * * * *
12605432 ACTTGGTATATGTGGTCCTTGTATTTTTTTTGGCATGCACAAGAAAATTCAGCTAAAATCTCGAA
257 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * *
12605497 GTGTACAAGATTTAGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACCTCAATGGCTACTGG
322 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
12605562 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
387 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
12605627 TAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCCCATCATGTGCGCACACCCACCCCC
452 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA--CACCCCC
* * * **
12605692 CGGCCCCCCGATCGTCGGAACCCCAATGCCG-CTGGTCATGTTCTCCGACGATGGTGC-CCCGAC
513 CGGCCCCCCGATCGTCGGAA-CCCAATGCCGTC-GGTCAGGTTCTCCGACGAT-GTGCTTCTGGT
* ** * * *
12605755 GAAGAAAAATTAGGC-ACGAACACATGCCCGAACCCAGCATGTGCTGCCGAAACCCTCGGTCCAG
575 GACGAAAAATGCGGCAAC-AACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
12605819 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
639 TC--ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
12605884 CAACCCACGAAACAAGCGCGAGGGTGCTCAGCC-GACCAGAAGGGCAGGATGCGCAAGCC-AGGG
702 CAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAG-CCAGAGGGGCGGGATGCACAAGCCGA-GG
* * * * * * ** * * *
12605947 GTCGGTCGGGTCCCCCTCTACGTGCTATCGATCCTGCTACTGCAACCCTCGGTCTGATCAAATCA
765 ATCAGTCGGGTCCCCCTCTGCATGTTGT-GATCCTGCTACCACAACCCTCGGTCTGGTCTAATCT
** * ** * *
12606012 TAGACTATGAATGAACTCCATATGCCTAAGCCAACTAACGAAACGTGCGGG
829 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGG
***
12606063 CGGGCGGGCACTACGCTTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTACGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
**
12606128 GGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGAATTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
12606193 ATGGTCCCTTAAGCCTTC-CATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
12606257 TTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAACTT
196 TTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAACTT
* * *
12606322 GGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAATATTTAGCTAAAAACTCGAAGTGT
261 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * *
12606387 ACAACATTTTGTGGCCATTTGAAAAAAGTCTCCCTATTTCAGACACTTTAATGGCTACTGGCAGC
326 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
12606452 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGCTTTGATGGGGGATAG
391 AAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
12606517 GGGGCCAATACAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCC
455 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* *
12606582 GCCGATTGTCGGAATCCCAATACCGTCGGTCAGGTTCTCCGACG-T-TGCTTCT-GTGACGAAAA
520 -CCGATCGTCGGAA-CCCAATGCCGTCGGTCAGGTTCTCCGACGATGTGCTTCTGGTGACGAAAA
* * *
12606644 ATGCGACAACAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTACGGTCTAATCTT
583 ATGCGGCAACAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC--ATCTT
**
12606709 AGACTAAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
646 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
* * * *
12606774 AAACGAGCGTGCGGGTGCTCAGCCAACCAGAGGGGCTGGATGCGCAAGCCGAGGATTAGTCGGGT
711 AAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAGTCGGGT
* * *
12606839 CCCCCTCTGCGTGTTGCTGATCCTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAA
776 CCCCCTCTGCATGTTG-TGATCCTGCTACCACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAA
*
12606904 TGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGGG
840 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGG
*** * * * *
12606944 CGGGCGAATACTATGTCAACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTTGGT
1 CGGGCGGGCACTACGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* **
12607009 GGGTTTAAGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
12607074 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-T
12607139 TTTG-AAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCC-AACT
195 TTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAACT
*
12607201 TGGTAAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGT
260 TGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
12607266 GTACAAGATTTTGTG-CCAATTTGAAAAAAGTGTCCTCATTTTAGACACTTTAATGGCTACTGGC
324 GTACAAGATTTTGTGACC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
12607330 AGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
388 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
12607394 AGGGGGCCAATATAAGGGCC-AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
453 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-C
*
12607458 CCCCCGATCG-CGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
517 CCCCCGATCGTCGGAA-CCCAATGCCGTCGGTCAGGTTCTCCGACGATG-T--G-C--T--T---
* * * *
12607522 CCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
570 CTGGTGACGAAAAATGCGGCAACAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
12607587 CCGATCCGATCTTAGACTGGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCC
635 CCGGT-C-ATCTTAGACTGGG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
12607651 TAAGTCAACCCACGAAACGAGCATGCGAGCGCTCAGCCAGCCAAAGGGGCGGGATGCACAAGCCG
697 TAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCG
* * * * ** * *
12607716 GGGATCAGTCGGGTCCCCATCTACATGCTATG-GATCCTGCTGCCACAAAACTTGGT-TCGGTCC
762 AGGATCAGTCGGGTCCCCCTCTGCATG-T-TGTGATCCTGCTACCACAACCCTCGGTCT-GGTCT
* * *
12607779 AATATTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGTGGG
824 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GTGGG
* *
12607843 CGGTCGGGCACTACGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGT
1 CGGGCGGGCACTACGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
12607908 GGGTTTAGGCACATCTTCATA-TT-TTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
66 GGGTTTAGGCACATCTTCATATTTCTTTG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATA
** * * * *
12607971 CAACAGTCCCTTAAGCCTTCATGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCATGA
129 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * *
12608036 TTTTTAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTTGCAAGG-GGTTTTGGCCCCAAA
194 TTTTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGG-TTTGGCCCCAAA
** * *
12608100 CATTTCTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAA
258 C--TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
12608165 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAATGGCTACTG
321 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
12608230 GCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGACGAGGG
386 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
12608295 ATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCGTCACACATCATGTGCGCACAACCCCCTC
451 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCC-C
* * * * * * *
12608360 GGCCCCCCCGATCATTGGAACCCTAATGGCGCCGGTTAGGTTCTCCGACGATGCTTCGGTGATGG
514 GG-CCCCCCGATCGTCGGAACCC-AATGCCGTCGGTCAGGTTCTCCGACGATG--T-GCT--T-C
* * * * **
12608425 TGCCCCGATGAAGAGAAATGCGGC-ACTAGCACATGCCCGAGCCCAACATGTGCTGTTGCAA-CC
571 TG----G-TGACGAAAAATGCGGCAAC-AACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
12608488 T---T-CGGTC--C----A----G--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATG
630 TCGGTCCGGTCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * ** *
12608530 CCCAAATCGACCCATGAAACGAGCGTACGGGCCCTCAGCCAGCCAGA-GGGTGGGATGCACAAGC
695 CCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGC
* * * * *
12608594 CGGGGATCGGTCGGGTCCCCCTCTGCATGTTGGTGATCTTGCTACCACATCCCTTGGTCTGGTCT
760 CGAGGATCAGTCGGGTCCCCCTCTGCATGTT-GTGATCCTGCTACCACAACCCTCGGTCTGGTCT
* *
12608659 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGTGGACGGG
824 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGT----GGG
* * *
12608723 CGGACGGGCACTACGCCAACCAAAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGT
1 CGGGCGGGCACTACGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** * *
12608788 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATACCATTTTTGTGGCTTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
12608853 ATGGTCCCTTAAGCCTTCACGTCAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-T
** *** * *
12608918 TTTG-AAACTTTTTGTGGTTC-CTCTTTTTTAAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAAC
195 TTTGAAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGAGGTTTGGCCCCAAAC
* * * *
12608981 ATGGCAGACGTGATCCTTGTATTTTTTTTGGCATCCACAAAAAAATTCAGCTAAAAACTCGAAGT
259 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* ** * *
12609046 GTACAAGATTTTGTGACCATTCGGGAAAAGTGTCCCCGTTTCAGAAACTTTAATGGCTACTGGCA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
12609111 GCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
389 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
12609176 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGTACACCCCCCTGGCC
454 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GG-C
* *
12609241 CCCCCGATCATCGGAACGCCAATGCCGCCGGTCAGGTTCTCCG
517 CCCCCGATCGTCGGAAC-CCAATGCCGTCGGTCAGGTTCTCCG
12609284 GTGATGCTCC
Statistics
Matches: 4318, Mismatches: 483, Indels: 352
0.84 0.09 0.07
Matches are distributed among these distances:
862 3 0.00
863 257 0.06
864 2 0.00
866 1 0.00
867 8 0.00
868 158 0.04
869 236 0.05
870 7 0.00
871 5 0.00
872 1 0.00
873 1 0.00
874 44 0.01
875 124 0.03
876 20 0.00
877 522 0.12
878 276 0.06
879 61 0.01
880 357 0.08
881 639 0.15
882 68 0.02
883 22 0.01
884 43 0.01
885 13 0.00
886 156 0.04
887 162 0.04
888 91 0.02
889 1 0.00
890 4 0.00
891 231 0.05
892 37 0.01
893 15 0.00
894 3 0.00
895 2 0.00
897 4 0.00
898 9 0.00
899 193 0.04
900 35 0.01
901 164 0.04
902 150 0.03
903 55 0.01
904 34 0.01
905 6 0.00
906 21 0.00
907 76 0.02
908 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (879 bp):
CGGGCGGGCACTACGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTGAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CGATCGTCGGAACCCAATGCCGTCGGTCAGGTTCTCCGACGATGTGCTTCTGGTGACGAAAAATG
CGGCAACAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
AGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGAGGATCAGTCGGGTCCCCC
TCTGCATGTTGTGATCCTGCTACCACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCGACGAAACGAGTGGG
Found at i:12607627 original size:27 final size:25
Alignment explanation
Indices: 12607597--12607649 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 25
12607587 CCGATCCGAT
12607597 CTTAGACTGGGAAATGAACTCCGTATG
1 CTTAGACTGGG-AATGAACT-CGTATG
12607624 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
12607649 C
1 C
12607650 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 7 0.27
26 8 0.31
27 11 0.42
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:12609873 original size:591 final size:595
Alignment explanation
Indices: 12608746--12609929 Score: 1883
Period size: 591 Copynumber: 2.0 Consensus size: 595
12608736 CGCCAACCAA
*
12608746 AGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
12608811 TCTACGTGCCAATACCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTC
66 TCTACGTGCCAATACCATTTTTATGGCTTGGAAATTCATACAATGGTCACTTAAGCCTTCACGTC
* ** ** ***
12608876 AAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCCTC
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGA
*
12608941 TTTTTTAAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACATGGCAGACGTGATCCTTGTATTTT
196 TTTTTTAAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACATGGCAGACGAGATCCTTGTATTTT
* * **
12609006 TTTTGGCATCCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGGG
261 TGTTGGCATCCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAA
*
12609071 AAAAGTGTCCCCGTTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCT
326 AAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCT
*
12609136 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
391 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * * * * *
12609201 CAGCACCCATCGCATATCATGTGCGTACACCCCCCTGGCCCCCCCGATCATCGGAACGCCAATGC
456 CAACACCCATCGCACAACATGTGCGCACACCCCCCCGGCCCCCCAGATCACCGGAACCCCAATGC
* * * *
12609266 CGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCAAATAAAAATGCGGCACCAG
521 CGCCGGTCAAGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCAGCACCAG
12609331 CACATGCCCG
586 CACATGCCCG
* *
12609341 AGAGACGGGATGTGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
12609406 TTTACGTGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGT-ACTTAAGCCTTCACGTG
66 TCTACGTGCCAATACCATTTTTATGGCTTGGAAATTCATACAATGGTCACTTAAGCCTTCACGTC
12609470 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC-TTTTACGGTTCGAG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-AG
* * *
12609534 ATTTTTTAAAAA-TTTTT-GGAGGGAGTTTTGGCCCCAAACATGGTAGACGAGATCCTTGTATTT
195 ATTTTTTAAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACATGGCAGACGAGATCCTTGTATTT
* *
12609597 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
260 TTGTTGGCATCCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTCGA
* * *
12609662 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCT-TTGGCAGCAAACCTGTAAAATCTCAAATGC
325 AAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGC
12609726 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTA
390 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTA
* *
12609791 CCAATACCCATCGCACAACATGTGCGCACACCCCCCCGGCCCCCCAGATCGCCGGAACCCCAATG
455 CCAACACCCATCGCACAACATGTGCGCACACCCCCCCGGCCCCCCAGATCACCGGAACCCCAATG
* * *
12609856 CCGCTGGTCAAGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCCCCA
520 CCGCCGGTCAAGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCAGCACCA
12609921 GCACATGCC
585 GCACATGCC
12609930 TTAGCCTAGC
Statistics
Matches: 539, Mismatches: 49, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
591 214 0.40
592 133 0.25
593 14 0.03
594 73 0.14
595 105 0.19
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (595 bp):
AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTACGTGCCAATACCATTTTTATGGCTTGGAAATTCATACAATGGTCACTTAAGCCTTCACGTC
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGA
TTTTTTAAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACATGGCAGACGAGATCCTTGTATTTT
TGTTGGCATCCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAA
AAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTAC
CAACACCCATCGCACAACATGTGCGCACACCCCCCCGGCCCCCCAGATCACCGGAACCCCAATGC
CGCCGGTCAAGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCAGCACCAG
CACATGCCCG
Found at i:12610007 original size:26 final size:26
Alignment explanation
Indices: 12609971--12610023 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12609961 TCGGTCCGAT
12609971 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
12609997 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
12610023 C
1 C
12610024 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12612500 original size:26 final size:26
Alignment explanation
Indices: 12612464--12612515 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
12612454 TGGTCTAATT
12612464 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGATTGGGAATGAACTCCGTATGC
12612490 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGATTGGGAATGAACTCCGTATGC
12612516 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGATTGGGAATGAACTCCGTATGC
Found at i:12613419 original size:26 final size:26
Alignment explanation
Indices: 12613361--12613420 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
12613351 CCTAGGTCTG
*
12613361 CTCCA-AT-CTTAGACTGGGAATGGA
1 CTCCATATGCTTAGACTGGGAATGAA
*
12613385 CTCTATATGCTTAGACTGGGAATGAA
1 CTCCATATGCTTAGACTGGGAATGAA
*
12613411 CTCCGTATGC
1 CTCCATATGC
12613421 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.07
26 24 0.80
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
CTCCATATGCTTAGACTGGGAATGAA
Found at i:12615201 original size:26 final size:26
Alignment explanation
Indices: 12615165--12615217 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12615155 CTGGTTGAAT
12615165 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12615191 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12615217 C
1 C
12615218 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12615636 original size:903 final size:901
Alignment explanation
Indices: 12610852--12628529 Score: 21943
Period size: 902 Copynumber: 19.8 Consensus size: 901
12610842 CATGTGCGAT
*
12610852 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGACG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* *** * * * * *
12610917 AAACGAGCGTGCGAGCGACCGGGCGAGCACTACGCTGGCCAGAGAGACGGGATGTGCAATCCATG
66 AAACGAGCGGGCG-GCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
12610982 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGGCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* *
12611047 TGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
12611112 TTTTCTATTTTTCACGA-TTTTGAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGAAA
260 TTTTCTATTTTTCACGATTTTTG-AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
*
12611176 GGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
12611240 CAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTCCAGACA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
12611305 CTTTAATGGCTAATGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTT
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
12611370 GAGGTTTGATCAGGGATAGGGGGCCAATATAAGGGCCAAGTCCCAGCACCCATCACACAACATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * ** *
12611435 GTGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATACCGTTGGTCAGGTTCTCCGACGA
584 GCGCACA-CCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
** * *
12611500 TGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGT
647 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
12611565 GCTGCCGTAA-CC-C--TC--G---G-TC-----C-------G-A-TCCG-AT-CTTAGACTGGG
712 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
12611604 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGGCTTAGCCGACGAGAGGG
777 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* ** * * *
12611669 GCAGGATGCTTAAGCCGGGGATCGATCGGGTCTCCCTCTGCGTGCTGCCAATCCTACTACC
842 GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA-C
* * * * * *
12611730 CGTAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCAACG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
12611795 AAACGAGCAGGTG-GGCGGGCGGGTGGGCACAACGTCGGCTAGAGAGACGGGATGCGCAAGTCGT
66 AAACGAGC-GG-GCGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
12611859 GGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATATTT
129 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
**
12611924 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTGTGGCAAGACGACTC
194 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
12611989 GTTTTCTATTTTACACGATTTTTGAAACTTTTTACGGTTGGGGGTTTTTTAAAATTTTTTCGAAA
259 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* *
12612054 GGATTTTTGGCCCCCAACTTGGTAGACGTGATCCTTGTATTGTTT-TTGGCATGCACAAAAAAAT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAAT
* * *
12612118 TCAGCTAAAAACTCGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAAAC
388 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
12612183 ACTTTAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCT
453 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
12612247 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATG
518 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
12612312 TGTGCACACCCCCCTTTCAGCCCTCCCGATCGTCGGAACCCCAATGCCGCTGGTCACGTTCT-C-
583 TGCGCACA-CCCCC---CGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * *
12612375 -CGA-----C-A--ATGGTGCCCCGACGAAGAAAAATATGGTACCAGCACATGCCCGAGCGCATC
643 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
12612431 ATGTGCTGTCGCAACCCTCGGTCTGGTCTAATTTTAGATTGGGAATGAACTCCGTATGCTTAGAT
708 ATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
12612496 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCAG
773 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * * * *
12612561 AGGGGCAGGATACGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTGCATGTTGTCGATCCTGCTAC
838 AGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* *
12612625 CGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
12612690 AAACGAACGGGCAGGCGGGCA-GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGT
66 AAACGAGCGGGC-GGCGGG-AGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
12612754 GGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGACATTTTT
129 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* * *
12612819 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGTCAAGTCGACTT
194 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
12612884 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTTCGGAA
259 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
** * *
12612949 GGAGTTTTGATCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
12613014 TAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
12613079 CTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTC
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
**
12613144 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACAAATCGCACATCATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** ** * *
12613209 GCGCACACCCCCGCTGGCCCCCCCGATCGTCGGAACTTCAATGCCATCGGTCAGGTTCTCTGGTG
584 GCGCACACCCCC-C-GG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
* * * * * *
12613274 ATGATCAGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCTAGCATG
646 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * ** * **
12613339 TGCTGCCGCAACCCTAGGTCTGCTCCAATCTTAGACTGGGAATGGACTCTATATGCTTAGACTGG
711 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * ** *
12613404 GAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAACGTAAGGGAGCTCAGCCGGCCAGAGG
776 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
* * * * * * *
12613469 GGCGGGATGCACAAG-CGGAGGATTGCTTC-GGTCCCCCTCTACGTGCTGGCAATCCCGCTAC
841 GGCGGGATGCGCAAGCCGG-GGATCG-ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* * * *
12613530 TGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
12613595 AAACGAACGGGCTAGCGGGCA-GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGT
66 AAACGAGCGGGC-GGCGGG-AGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
12613659 GGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGACATTTTT
129 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
*
12613724 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTA
194 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** ** * *
12613789 GTTTTCTATTTTTCATGATTTTCCAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAA
259 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* *
12613854 GGAGTTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAACAATT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
12613919 CAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
12613984 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
12614049 AAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTTCCAACACCCATCACACATCATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
12614113 GCGCACACCCCCCGGCCACCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGG---T-------T
584 GCGCACACCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * * *
12614168 -CTCCGACGATGGTGCCCCGACGAA-AAAAATTACGGCACCAGCACATGCCTGAGCCTAGCTTGT
648 GCTCCGACGATGGTGCCCCGACGAAGAAAAA-TGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * ** * * **
12614231 GCTGACGCAA-CTTTGGTCCAGTCTGATCCTAGACTGGGAATGAACTCTGTATGCTTAGACTACG
712 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * * *
12614295 AATGAACTCCATATGCCTAAGTCAACCAATGAAACGAGTGTGCGGGCGCTTAGCCGGCCAGAGGG
777 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
** * * ** * * *
12614360 AAGGGATGCGCAATCCGAGGATCGATCGGGTCCCCCTCTATGTGCTGCTGATCTTGCTAT
842 GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* ** *
12614420 CGCAACCCTCGGTCCGGTCTGATCTTAGA-TAGGGAACAAACTCCGTATGCCTAAGCCAACCGAT
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
12614484 GAAACGAGCGGGTGGGCGAACAGGTGGGCGGGCACTACACCGGCCCGAGAGACGGGATGCGTAAG
65 GAAACGAGCGGG-CGGCG----GGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * **
12614549 CCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGAACATCTTCATATTTCTGTGTGCCAATGCCAT
125 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* *
12614614 TTTGATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACG
190 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** * * *
12614679 ACTCATTTTCTATTTTTCATTATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTT
255 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
12614744 GGAAGGAG-ATTGCACCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAA
320 GGAAGGAGTTTTG-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
12614808 AAATTCAGCTCAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTC
384 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
12614873 AAACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
449 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
12614938 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
514 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * *
12615003 CATGTGCGCACACGCCCCTGGCCCCCCGATCG-CAGGAAGGCCAATGCCGTCGGTCTGGTTCTCC
579 CATGTGCGCACAC-CCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
12615067 GGCGATGCTCTGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
642 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* ** * * *
12615132 CACGTGCTATCGCAACCCTTGATCTGGT-TGAATCTTAGACTGGGAATGAACTCCATATGCTTAG
707 CATGTGCTGCCGCAACCCTCGGTCTGGTCTG-ATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
12615196 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCTGCC
771 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * * * * * *
12615261 AGAAGGGTGGGATGCACAAGCCAGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCCTGCTA
836 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA
12615326 C
901 C
* * * *
12615327 CGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGTCTAAGCCAACAGACG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
** * * *
12615392 AAACGAGCAAGCAGGTGGGAGGGCAGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTG
66 AAACGAGCGGGC-GGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
**
12615457 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* * *
12615522 TGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCA
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
12615587 TGTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAA
260 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* ** * *
12615652 GAGTTTTTGCCTTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAATTC
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
12615717 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGACAC
390 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* **
12615782 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATTATCTTTAAGGGGGTGTGAGTTCTCG
455 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
12615847 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTG
520 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
12615912 CGCACATCCCCCTAGTCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCTGACGAT
585 CGCACA-CCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
** * * *
12615977 GCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGTATGTG
648 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * * * * * *
12616042 CTGTAGTAACCCTCGGTCCGGTCCGATCTTACATTGGGAATGAACTCCGTATACTTAGACTGGGA
713 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
12616107 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCAGGTGCTCAGTCGGCCAGAGGGG
778 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGG
* * * * * ** *
12616172 CAGGATGCGCAAGTCGTGGATCG-GCTAGGTCCCCCT-TCGCAAGCTGCTGATCCTGCTAC
843 CGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCT-GCGTGCTGCCGATCCTGCTAC
* * * * ** **
12616231 CACAACCCTCGATCTGATCTGATCTAAGACTGGGAATGAGTTCCGTATGCCTAAGCCATTCGACG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
12616296 AAACGAGCGGGCGGGCGGGCGGTCGGGCTCTACGCCGACCAGAGAGACGGGATGCGTAAGCGGTG
66 AAACGAGCGGGC-GGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
12616361 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTCTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* * * *
12616426 TGGCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGGAAGATGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
12616491 TGTTCTATTTTTCACAATTTTTGAAACCTTTTACGATTC-AGGATTTTTTAAAATTTTTTCGAAA
260 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAA
* *
12616555 GGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCAAGCACAAAAAAATT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
12616619 CAGCTAAAAATTC-AATGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
389 CAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
12616683 ACTTTGATGGCTACTGGCAGTAAACTTGTAAAATCTCAAATGCTCGTTAAGGGGGTGTGAGTTCT
453 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
12616748 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
518 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * *
12616813 TGCACACACCCCCCGGCCCCCCGATTG-CTAGAACCTCAATGCCGCCGGCTCA-GTTTTGCGGTG
583 TGCGCACACCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCGG-TCAGGTTCTCCGGCG
* * *
12616876 ATGCTCCGACGATGGTGCCCCTACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCATG
646 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
12616941 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAATTCGTATGCTTAGACTGG
711 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
12617006 GAATGAACTCCATATGCCTAAGTCAACCCAAGAAATGAGTGTGCGGGTGCTCAGTCGGCCAGAAG
776 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
* * *
12617071 GGCGGGATGCACAAGCCAGGGATCGATCGAGTCCCACTCTGCATGCTATCGATCTGGCTGCTGCA
841 GGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CC-C-C--C-T-C--T-G--C--G-TGCTG--
*
12617136 ACCCTCAGGTCCCCCTCTGTGTGCTACCGATC
889 ---C-C-GAT----C-C----TGCT----A-C
* * * * *
12617168 TTGCTGTCGTAGCCCTCGGTCTGGTCCGATCATAGACTCGGAGTGAACTCCGTATGCCTAAGCCA
1 ---C-G-C--AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
12617233 ACCGACGAAACGAGCGGGCGAGCAAGAGGGCGGACGCTACGCCGGCCAGAGAGACGGGATGCACA
59 ACCGACGAAACGAGCGGGCG-GCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ** *
12617298 AGCCGTGGATCAATAGGGTGAAAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
123 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
*
12617363 ATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
188 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
12617428 CGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTCAAAATTTTT
253 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
12617493 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGGATGCACAAA
318 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
12617558 AAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTT
383 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
12617622 CAGACACTTTAATGGCTACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
448 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
12617687 GTTCTCGAGGTTTGATGATGGATACGGAGCCAATATAAGGGCCATGTACCAGCAGCCATCGCACA
513 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
12617752 TCATGTGCACACACCCCCTCGGCCCCCCGATCGTCGGAACGCCAATGCCGTCGGTTAGGTTCTCC
578 TCATGTGCGCACACCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * *
12617817 AGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGACACCAACACATGCCCGAGCCCAG
642 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * **
12617882 CATGTGCTGCTGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCTATATGCTTAGA
707 CATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
12617947 CTGGGAATGAACTCCATCTGCCTAAGTCAACTCATGAAACGAGTGTGCGGGTGCTCAGCCGGCCA
772 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * * ** * * *
12618012 GAGGGGCAGCATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTGC
837 GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* * ** * *
12618077 CGCAACCTTCGATCAAGTCTGATCTTATACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
12618142 AAACGAGCGGGCGG-GCGAGCAGGTGGGCACTACGCCGGCCAGAGTGACGGGATGCGCAAGCCGT
66 AAACGAGCGGGCGGCGGGAG--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
12618206 GGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
129 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
*
12618271 ATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
194 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** *
12618336 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTGAAAATTTTTT-GCGA
259 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG-GA
** * * *
12618400 AGGAGTTTTGGCATCAAACTTGGTTGACATGATCCTTGTATTTTTGTTGTCATGCAC-AAAAAAT
323 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
12618464 TCAGCTAAAAACTCGAACTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
388 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
12618529 ACTTTGATGGCTACTGGTAGCAAACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
453 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * * *
12618594 CGAGGTTTGATGAGCGATATGTGGCTAATATAAGGGCCAAGTACCAGCTCCCATCGCACATCATA
518 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * * * * *
12618659 CGCGTACACCCCTCCGGCCCCCCCGATCGCCAGAACCCTAACGTCGCTGGTCAGGTTCTCTGGCA
583 TGCGCACACCCC-CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
* * ** * *
12618724 ATGCTCCGGC-ATGGTGCCTCGGTGAAGAAAAATGCGGCACCAACACATGTCCGAGCCCTA-CAT
646 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-AGCAT
* * * * * * * * *
12618787 GTGCTACTGCAACCCCCGGTCTGATCCGATCTTAAACTTGGAATGAACTCCGGTCTGATCTTAAA
710 GTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC-GTATG--CTTAGA
* * * * *
12618852 CTTGGAATGAACTCC----G-----GT-----C-TG----GA-C---C-GGT-CTGATCTGGCCA
772 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * * ** * * * *
12618892 AAGGGGCTGGTTGCGCAAGTTGGGGATCGA-CTGGGTCACCCTCTGTGTGCTACCGATCCTGCTG
837 GAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA
12618956 C
901 C
* ** ** ** * * *
12618957 TGCAACCCTTAGTCCAGTCCAATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACA
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
12619022 AAACGAGC--G-GGCGGGCGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGG
66 AAACGAGCGGGCGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
12619084 ATTGATAAGGTGGTA-GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* * *
12619148 GGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
12619213 TTTATATTTTTCACGATTTTTGAAAC-TTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGGAAGG
261 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * *
12619277 AGTTTTGGCCCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCA
326 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
12619342 GCTCAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
391 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
12619407 TTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
456 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
12619472 GCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
521 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
12619537 GCACACCCCTCCCGGCCCCCCCGATCGCCGGAACCCCAAGGCCGCCGGTCAGGTTCTCCGGCGAT
586 GCACA-CCC-CCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* ** * * * * *
12619602 CCTCCGGTGATGGTGCCCCGACGAAGAAAAATGAGGCACCAACAAATGCCCGAGCCTAGCATCTG
648 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * *
12619667 CTGCTGTAACCCTTGGCCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
713 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* **
12619732 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCAACCAGAGGGG
778 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGG
* * * * * * * *
12619797 CGAGATTCGCAAGTCGGGGATCGACCGGGTCCCTCTCTGCATGCTGCCGATCCTACTGC
843 CGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* ** ** * * *
12619856 TGCAACCCTCAATCCAGTCCT-ATCTTATACTGGAAATGAACTCCGTATGCCTAAGCCAATCGAC
1 CGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
12619920 GAAATGA--GTG-GGCGGGCGGGCGGGCACTATGCCGGCCATAGAGACGGGATGCGCAAGCCGTG
65 GAAACGAGCGGGCGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
12619982 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCGTGCCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
*
12620047 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
12620112 TTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCCG-A
260 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAA
* * * * * * **
12620175 TGCGTTTTGGCACTAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGTGTGCACAAAAAAATT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
12620240 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCACCATTTCAAACA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
12620305 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTG
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
12620370 GAGGTTTCATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * * **
12620435 GAACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCAACGAT
584 GCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
** ** * * * * *
12620500 GCTCCGGTGATGGTATCCCGACGAAGAAAAATGTGACACCAACACATGTCTGAGCCCAGCATGTG
648 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * ** * * *
12620565 CTGCCGCAACCCTCGATCCGATCCAATCTTAGATTGGGAGTGAACTCCGTATGCTTAGACTCGGA
713 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
12620630 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCTGGCCAGAGGGG
778 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGG
* * * * *
12620695 CGGGATGCGCAAGCCGGGGATCG-GCTGGGTCCCCCTCTGTGTGCTACTGATCCTGCTGC
843 CGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* * * *
12620754 CGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * ** * * *
12620819 AAACGACCGGACGGCGGGCGGTTGGGCACTATGCCGGCCAGAGAGACGGGATGTGTAAGCCGTGG
66 AAACGAGCGGGCGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
12620884 ATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATTCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
** * * ** *
12620949 TTCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGAAGCAT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
** * * *
12621014 TTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAATG
261 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* *
12621079 AGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGAATTTTT-TTGGCATGCACAAAAAAATTCA
326 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
12621143 GCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACT
391 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
12621207 TTAATGGCTACTGGCAGCAAACTTGTAAAATCTCACATACTCTTTAAGGGGGTGTGAGTTCTCGA
456 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
12621272 GGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
521 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
12621337 GCTCACCCCCCTCGGCCCCCCCGATC-TCTGGAACCCTAATGCCGTCAGTCAGGTTCTCCGGCGA
586 GCACA-CCCCC-CGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
** * * *
12621401 TGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCATCACATGCCCAAGCCCAGCATGT
647 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* ** *
12621466 GCTGTCATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
712 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
12621531 AATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAAAAGG
777 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * * * ** *
12621596 GCGGGATGCACAAGCCGGAGATCGACCGGGTCCCTCTCTGCGTGCTATCAATCCTGCTAC
842 GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* * ** ** *
12621656 CACAACCCTCAGTCTGGT-TCGATCTTAGACTAAGAGCGAACTCCGTATGCCTAAGCCAACCGAT
1 CGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* *** *
12621720 GAAACGAGCGGCCAGGC-GGA---CGGGCACTACGTTAGCCAGAGAGACTGGATGCGCAAGCCGT
65 GAAACGAGCGGGC-GGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
12621781 GGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGACATTTTT
129 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
*
12621846 ATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
194 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
12621911 GTTTTCTATTTTTCACGATCTTCGAAACTTTTTACGATTC-AGAATTTTTTAAAATTTTTTCAGA
259 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTCGGA
* ** * * *
12621975 AGGAGTTTTGGTCCCAAACTTCATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAGT
323 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
12622040 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTTAAAAAAGTGTCCCCATTTCAGAC
388 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* **
12622105 ACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCAGGTGTGAGTTCT
453 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
12622170 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
518 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
12622235 TGCGCTCACCCCCCTCGGCCCCCCCGATC-TCTGGAACCCTAATGCCGTCAGTCAGGTTCTCCGG
583 TGCGCACA-CCCCC-CGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
** * * *
12622299 CGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCATCACATGCCCAAGCCCAGCA
644 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* ** *
12622364 TGTGCTGTCATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
709 TGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
12622429 GGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGACCAAA
774 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
* ** * * ** *
12622494 AGGGCGGGATGCGCAAGCCGAAGATCGACCGGGTCCCTCTCTGCGTGCTATCAATCCTGCTAC
839 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* * ** ** *
12622557 CACAACCCTCAGTCTGGT-TCGATCTTAGACTAAGAGCGAACTCCGTATGCCTAAGCCAACCGAT
1 CGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* *** *
12622621 GAAACGAGCGGCCAGGC-GGA---CGGGCACTACGTTAGCCAGAGAGACTGGATGCGCAAGCCGT
65 GAAACGAGCGGGC-GGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
12622682 GGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGACATTTTT
129 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
*
12622747 ATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
194 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* **
12622812 GTTTTCTATTTTTCACTATTTTCAAAACTTTTTA-----CG-G--------------TTT--G--
259 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * *
12622853 GGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGAATGCACAAAACAATT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
12622917 CAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
12622982 CTTTAAGGGATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGTGTGTGAGTTCTC
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
12623046 GAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATTGCACATCATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* ** * * * *
12623111 GCGCACACACCCTAGCCCCCCGATCGTCGAAACCGCAATGCTGCCGGTCAGGTTCTCCGGGGATG
584 GCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * * *
12623176 CTCCGATGATGGTGCCCCGACGAAGAAAAATACAGCACCAACACATGCCCGAGCCCAGCATGTGC
649 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
12623241 TACCGCAACCCTCGGTCTGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
714 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
12623306 TTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCAGACGGGC
779 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC
* * * * *
12623371 GGGATGCGCAAGCCGAGGATCGATCGGGTCTCCCTCTGTGTGTTGCCGATCCTGCTAT
844 GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* * * * *
12623429 CGCAACCCTCGGTCCGATATGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGATG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
12623494 AAACGA--GTG-GGC----GGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGG
66 AAACGAGCGGGCGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
12623552 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
**
12623617 GGCTTGTAAATTCATACAATGGTCTTTTAA-----CACGTGAAGTTTCATGGCAAGACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
12623677 TTCCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAAG
261 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* *
12623742 AGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCA
326 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
12623807 GCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
391 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
12623872 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTG-
456 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
12623936 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCACACATCATGTGC
521 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** * * *
12624001 GCTCACCCCCCCAGCCTCCCCGATCGTCGGAACCGTAAAGCCGCCGGTCAGGTTCTCTGGAGATG
586 GCACA-CCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* ** * *
12624066 CTCCGGCGATGGTGCCCCGTTGAAGAAAAATGTGGCACCAGCACATGCCCTAGCCCAGCATGTGC
649 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
12624131 TAG-CGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGAGA
714 T-GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
12624195 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-CTATGGGGGCGCTCAGCTGGCCAGAGGG
778 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGTGCTCAGCCGGCCAGAGGG
* * * * ** **
12624259 GCGGGTTGCGCAAGCCGGGGATCGGTCGGGTCCTCCTTTGCGTGCTGCTAATCCTGCTGT
842 GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* * * * * * * *
12624319 TGTAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
12624384 AAACGAACGGGCGGACGGGTGGGCGGGCATTACGCCGGCCAAAGAGACGGGATGCGCAAGTCGTG
66 AAACGAGCGGGCGG-CGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
12624449 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTACCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
*
12624514 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * * * * *
12624579 TTTTCTATTTTTCACGATCTTCGAAACGTTTTATGATTCAAAATTTTTTAAAATTTTTTCAGAAG
260 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
** * *
12624644 GAGTTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAACAGTTC
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
12624708 AGCTAAAAACTCGAAGTGTACAATATTTTGTGATCATTTGAAAAAAGTGTCCCTATTTCAGACAC
390 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
12624773 TTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
455 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
12624838 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTG
520 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * *
12624903 CGAACACCCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGTGAT
585 CG--CACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* *
12624968 GCT-CTAGCGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATG-CCAAGCCCAGCATG
648 GCTCCGA-CGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
*
12625030 TGCTGCCGCAA-CC-C--T-T-G---G---TT---C--GG--T---CT--G-AT-CTTAGATTGG
711 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
** ** *
12625069 GAATGAACTCCACATGCCTAAGTCAACCCACGAAACGAGTATGGGGGTGCTCAGCCGGCCAGAGG
776 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
* * * * * * ** **
12625134 GGCGGGTTGCGTAAGTCAGGGATCGA-CAGGGTCCTCCTTTGCGTGCTGCTAATCCTGCTGT
841 GGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* * * * * *
12625195 TGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCATACGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* *
12625260 AAACGAGC--G-GGC-GAACGGGC-GG----ACG--GGCCAGAGAGACGGGATGCGTAAGCCGTG
66 AAACGAGCGGGCGGCGGGA-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
12625314 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTATGTGCCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* * *
12625379 TGGCTTGCAAATTCATACAATGG-CCCTGAAGCCTTCACGAGAAGTTTCATGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
12625443 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTGAAAATTTTTTTGGAAA
260 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG-AA
* *
12625508 GGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCA-AAAACAAAT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAAT
*
12625572 TCAGC-AGAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
388 TCAGCTA-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
12625636 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTC
452 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
12625701 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATGAT
517 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * * *
12625766 CTGCGCACACCGCCCCGGCCCCCCGATTGCCGAAATCCCAATGCCGCCAGTTAGGTTCTCTGGCG
582 GTGCGCACACC-CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
* *
12625831 ATG-TGCC--C-A--G-G---C-A--ATGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCAT
646 ATGCT-CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
** * * *
12625883 GTGCTGGTGCAACCCTCAGTCTGGT-TCGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACA
710 GTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
12625947 GGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGCGTGTGCGGGTGCTCAGTCGGCCAGA
774 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
* * * * * * ** *
12626012 AGGGCGGGATGCACAAGCCAGGGATCGATCGAGTCCCACTCTGCATGCTATCGAT-CTAGCTGC
839 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT-GCTAC
* * * ** ** * * * *
12626075 TGCAACCCTCAGTTTCATCCAATCCTAGTCTGGGAATGAACTCCTTATGCCTAAGCCAACCGAGG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * * *
12626140 AAACGAGCGGGCGAGCAGGCGGGCAGGCACTACGTCGGCCAAAGAGATGGGATGTGCAAGCCGTG
66 AAACGAGCGGGCG-GCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
12626205 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
*
12626270 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
12626335 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTATAATTTTTTC-GACA
260 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA-A
* * * *
12626399 AGAGTTTTGGCGCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
12626464 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACA
389 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * * *
12626529 CTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAGGGGTGTGAGTTTTT
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
12626594 GAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGACAAGTACTAGCACCCATCGCA-ATCATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
12626658 GCGCACACCCCCCGGCCCCCTCGATCGCCAGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGAT
584 GCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * * * *
12626723 GCTCCGACGATGGTGCCCCGGCAAAGGAAAATGTGGCACCAGCACATGCCGGAGCCCAGCATGTG
648 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
12626788 CCGCCGTAACCCTCGGTCTGATCCT-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
713 CTGCCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
12626852 AATGAACTTCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
777 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
* * * * * * * *
12626917 GCGGGATGTGCAAGCTGAGGATCGGTCGGGTCCGCCTCTGCATGCTGTCGATCCTGCTAT
842 GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* * * * * *
12626977 CACAACCCTTGGTCTGGTCTGATCTTAGATTGGGAATGTACTCCGTATGCCTAAGCCAACCAACA
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * ** * *
12627042 AAATGAGTGGGCGGGCAGGCGGGCGGGCACTACGTCAACCAGGGAGACGGGATGCGTAAGCCGTG
66 AAACGAGCGGGC-GGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * *
12627107 GATCGATAGGGTGGCAAGTGGGTTTAGGCACATCTTCATATTTATACATGCCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
12627172 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * * * * **
12627237 TTTTCTATTTTTCACGATTTTCAAAAATTTTTGCGGTTTGAGATTTTTTCAAATTTTTTCAAAAG
260 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* *
12627302 GAGATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
12627367 AGCTAAAAACTC-AGAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTCCAGACA
390 AGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
12627431 CTTTAATGGCTACTGGCAGCAAACCTATAAAATATCAAATGCTCTTTAAGCGGGCGTGAGTTCTC
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
12627496 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA-ATTATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
12627560 GCGCACACCCCCCGGCCCCCTCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTTTCCGGTGAT
584 GCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
*
12627625 GCT-CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
648 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * ** *
12627689 CTGCCGTAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATTCACTTCGTATGCTTAGACTGGGA
713 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * * *
12627754 ATGAACTCCGTATGCCTATGTCAACCCATGAAATGAGCGTGTGAGCGTTCAGCCGGCCAGAGGGG
778 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGG
* * *
12627819 CGGGATGCGCAAGCCGAGGATCAATCGGGTCCCCCTCTCCGTGCTGCCGATCCTGCTAC
843 CGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
* ** * * * * *
12627878 CACAAAACTCGATCAGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAA-CCAATCGACG
1 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
12627942 AAACGA--GTG-GGC---A-GGCGGGCACTATGCCGGCCAGAGAGACGAGATGTGCAAGCCATGG
66 AAACGAGCGGGCGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
12628000 ATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* *
12628065 GGCTTCTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
**
12628130 TTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTC-ATGATTTTTTAAAATTTTTT-GGAAG
261 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAG
* *
12628193 GATTTTTGGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTC
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
12628258 AGTTAAAAACTC-ATAGTGTACAAGATTTTGTGACTATTTGAAAAAAAGTGT---C---GC--A-
390 AGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGAC
12628313 AC---AA-----A----CAG-------GTAAAA-CTCAAATGCTCTTTAAGGGGG-GTGAGTTCT
453 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * * * * **
12628357 CAAAGTTTGATGA-GGATATGGCG-CAATA-AAGGTCCAGGTACTAGTGCCCATCGCACATCATG
518 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
12628419 TGCACACACCACCCCCGGCCCTCCGATCGTCGAAACCTCAATGCCGCCAGTCAGGTTCTCCGGCT
583 TGCGCACA-C-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
* * * *
12628484 ATGCTTCGACGATGGTACCCCGACGAAGAAAAATACAGCACCAGCA
646 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
12628530 TGTGCTGCCG
Statistics
Matches: 14762, Mismatches: 1685, Indels: 722
0.86 0.10 0.04
Matches are distributed among these distances:
853 23 0.00
854 22 0.00
855 2 0.00
856 3 0.00
858 1 0.00
859 24 0.00
860 19 0.00
861 48 0.00
862 69 0.00
863 77 0.01
864 100 0.01
865 204 0.01
866 201 0.01
867 3 0.00
868 132 0.01
869 2 0.00
870 57 0.00
871 10 0.00
872 329 0.02
873 8 0.00
874 106 0.01
875 405 0.03
876 470 0.03
877 91 0.01
878 452 0.03
879 101 0.01
880 295 0.02
881 43 0.00
882 2 0.00
883 9 0.00
884 7 0.00
885 6 0.00
886 3 0.00
887 3 0.00
888 231 0.02
889 42 0.00
890 586 0.04
891 502 0.03
892 318 0.02
893 12 0.00
894 458 0.03
895 525 0.04
896 242 0.02
897 6 0.00
898 466 0.03
899 429 0.03
900 602 0.04
901 1624 0.11
902 1909 0.13
903 1002 0.07
904 656 0.04
905 728 0.05
906 63 0.00
907 219 0.01
908 1 0.00
909 1 0.00
911 3 0.00
913 1 0.00
914 3 0.00
916 4 0.00
918 1 0.00
919 1 0.00
921 1 0.00
923 3 0.00
924 1 0.00
925 1 0.00
927 1 0.00
928 1 0.00
930 5 0.00
931 1 0.00
932 4 0.00
933 1 0.00
935 1 0.00
936 2 0.00
937 1 0.00
938 1 0.00
939 1 0.00
940 2 0.00
942 2 0.00
943 2 0.00
944 465 0.03
945 301 0.02
946 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGGCGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
Found at i:12616098 original size:26 final size:26
Alignment explanation
Indices: 12616069--12616119 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12616059 CCGGTCCGAT
*
12616069 CTTACATTGGGAATGAACTCCGTATA
1 CTTACACTGGGAATGAACTCCGTATA
*
12616095 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
12616120 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATA
Found at i:12617021 original size:26 final size:26
Alignment explanation
Indices: 12616970--12617022 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12616960 CCGGTCCGAT
* *
12616970 CTTAGACTGGGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
*
12616996 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
12617022 C
1 C
12617023 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:12618856 original size:29 final size:29
Alignment explanation
Indices: 12618814--12618872 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
12618804 GGTCTGATCC
12618814 GATCTTAAACTTGGAATGAACTCCGGTCT
1 GATCTTAAACTTGGAATGAACTCCGGTCT
12618843 GATCTTAAACTTGGAATGAACTCCGGTCT
1 GATCTTAAACTTGGAATGAACTCCGGTCT
12618872 G
1 G
12618873 GACCGGTCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (29 bp):
GATCTTAAACTTGGAATGAACTCCGGTCT
Found at i:12619723 original size:26 final size:26
Alignment explanation
Indices: 12619694--12619746 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12619684 CCGGTCTGAT
*
12619694 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12619720 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12619746 C
1 C
12619747 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12621148 original size:901 final size:901
Alignment explanation
Indices: 12618887--12628309 Score: 12067
Period size: 901 Copynumber: 10.6 Consensus size: 901
12618877 GGTCTGATCT
* * * ** * * *
12618887 GGCCAAAGGGGCTGGTTGCGCAAGTTGGGGATCGACTGGGTCACCCTCTGTGTGCTACCGATCCT
1 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTACTGATCCT
* * * * * *
12618952 GCTGCTGCAACCCT-TAGTCCAGTCCAATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAA
66 GCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
12619016 CCGACAAAACGAGC-G-GGCGGGCGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGAAAGC
130 CCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
12619079 CGTGGATTGATAAGGTGGTA-GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
195 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
12619143 TTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
260 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
12619208 CTTGTTTTATATTTTTCACGATTTTTGAAAC-TTTTGCAGTTCGAGATTTTTTAAAATTTTTTTG
325 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
* * *
12619272 GAAGGAGTTTTGGCCCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAACAA
390 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
12619337 ATTCAGCTCAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
455 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
12619402 ACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
520 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
12619467 CTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
585 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
12619532 TGTGCGCACACCCCTCCCGGCCCCCCCGATCGCCGGAACCCCAAGGCCGCCGGTCAGGTTCTCCG
650 TGTGCGCACA-CCC-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** * * * * *
12619597 GCGATCCTCCGGTGATGGTGCCCCGACGAAGAAAAATGAGGCACCAACAAATGCCCGAGCCTAGC
713 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
* * * * * *
12619662 ATCTGCTGCTGTAACCCTTGGCCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
778 ATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
*
12619727 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGCC
843 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
** * * * * * * * *
12619786 AACCAGAGGGGCGAGATTCGCAAGTCGGGGATCGACCGGGTCCCTCTCTGCATGCTGCCGATCCT
1 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTACTGATCCT
* * * * * * * *
12619851 ACTGCTGCAACCCTCAATCCAGTCCTATCTTATACTGGAAATGAACTCCGTATGCCTAAGCCAAT
66 GCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
12619916 CGACGAAATGAG-TG-GGCGGGCGGGCGGGCACTATGCCGGCCATAGAGACGGGATGCGCAAGCC
131 CGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
12619979 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCGTGCCAATGCCATTT
196 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
*
12620044 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAAC
261 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
12620109 TCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCC
326 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCG
* * * * * * **
12620173 G-ATGCGTTTTGGCACTAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGTGTGCACAAAAAA
390 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
12620237 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCACCATTTCAA
455 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
12620302 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTT
520 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
12620367 CTGGAGGTTTCATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCA
585 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** * **
12620432 TGTGAACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCAAC
650 TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
** ** * * * *
12620497 GATGCTCCGGTGATGGTATCCCGACGAAGAAAAATGTGACACCAACACATGTCTGAGCCCAGCAT
715 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCAT
* * * * * * *
12620562 GTGCTGCCGCAACCCTCGATCCGATCCAATCTTAGATTGGGAGTGAACTCCGTATGCTTAGACTC
780 GTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* *
12620627 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCT
845 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* *
12620684 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGTGTGCTACTGATCCT
1 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTACTGATCCT
* * *
12620749 GCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCAAC
66 GCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * *
12620814 CGACGAAACGACCGGACGGCGGGCGGTTGGGCACTATGCCGGCCAGAGAGACGGGATGTGTAAGC
131 CGACGAAACGAGCGG-CGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
12620879 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATTCCATT
195 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
** * *
12620944 TTTATTTCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGA
260 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** * ** *
12621009 AGCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCG
325 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
* * *
12621074 GAATGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGAATTTTT-TTGGCATGCACAAAAAA
390 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
12621138 ATTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAG
455 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
12621202 ACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCACATACTCTTTAAGGGGGTGTGAGTT
520 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
12621267 CTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
585 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
12621332 TGTGCGCTCACCCCCCTCGGCCCCCCCGATCTCTGGAACCCTAATGCCGTCAGTCAGGTTCTCCG
650 TGTGCGCACA-CCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * *
12621397 GCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCATCACATGCCCAAGCCCAGC
713 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
* * *
12621462 ATGTGCTGTCATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
778 ATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
*
12621527 TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
843 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * * * *
12621586 GACCAAAAGGGCGGGATGCACAAGCCGGAGATCGACCGGGTCCCTCTCTGCGTGCTA-TCAATCC
1 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTACT-GATCC
* * * * ** **
12621650 TGCTACCACAACCCTC-AGTCTGGTTCGATCTTAGACTAAGAGCGAACTCCGTATGCCTAAGCCA
65 TGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *** *
12621714 ACCGATGAAACGAGCGGC--CAGGCGGACGGGCACTACGTTAGCCAGAGAGACTGGATGCGCAAG
129 ACCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
12621777 CCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGACAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
*
12621842 TTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
259 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
12621907 ACTCGTTTTCTATTTTTCACGATCTTCGAAACTTTTTACGATTC-AGAATTTTTTAAAATTTTTT
324 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAG-ATTTTTTAAAATTTTTT
* * ** *
12621971 CAGAAGGAGTTTTGGTCCCAAACTTCATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
388 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
12622036 CAGTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTTAAAAAAGTGTCCCCATTTC
453 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* **
12622101 AGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCAGGTGTGAG
518 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
12622166 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
583 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
12622231 CATGTGCGCTCACCCCCCTCGGCCCCCCCGATCTCTGGAACCCTAATGCCGTCAGTCAGGTTCTC
648 CATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * *
12622296 CGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCATCACATGCCCAAGCCCA
711 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCA
* * *
12622361 GCATGTGCTGTCATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
776 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
12622426 ACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCC
841 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * ** * * *
12622487 GACCAAAAGGGCGGGATGCGCAAGCCGAAGATCGACCGGGTCCCTCTCTGCGTGCTA-TCAATCC
1 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTACT-GATCC
* * * * ** **
12622551 TGCTACCACAACCCTC-AGTCTGGTTCGATCTTAGACTAAGAGCGAACTCCGTATGCCTAAGCCA
65 TGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *** *
12622615 ACCGATGAAACGAGCGGC--CAGGCGGACGGGCACTACGTTAGCCAGAGAGACTGGATGCGCAAG
129 ACCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
12622678 CCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGACAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
*
12622743 TTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
259 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** *
12622808 ACTCGTTTTCTATTTTTCACTATTTTCAAAAC-TTTT----TACG-G--------------TTT-
324 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* * *
12622852 -G--GGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGGAATGCACAAAAC
389 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
12622913 AATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
454 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
12622978 GACACTTTAAGGGATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGTGTGTGAGT
519 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
12623042 TCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATTGCACATC
584 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** * * * *
12623107 ATGTGCGCACACACCCTAG-CCCCCCGATCGTCGAAACCGCAATGCTGCCGGTCAGGTTCTCCGG
649 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * *
12623171 GGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATAC-AGCACCAACACATGCCCGAGCCCAGC
714 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGC
* * * * *
12623235 ATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCTTAGAC
778 ATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
12623300 TGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
843 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * * * *
12623359 AGCCAGACGGGCGGGATGCGCAAGCCGAGGATCGA-TCGGGTCTCCCTCTGTGTGTTGCCGATCC
1 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCGTGCTACTGATCC
** * * ** *
12623423 TGCTATCGCAACCCTCGGTCCGATATGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
65 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
12623488 CCGATGAAACGA------GTGGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGC
130 CCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
12623547 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
195 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
**
12623612 TTTATGGCTTGTAAATTCATACAATGGTCTTTTAA-----CACGTGAAGTTTCATGGCAAGACGA
260 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
12623672 CTCGTTTCCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCA
325 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
* * *
12623737 GAAAGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAA
390 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
12623802 ATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
455 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
12623867 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTT
520 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
12623932 CTTG-GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCACACATCA
585 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * ** * *
12623996 TGTGCGCTCACCCCCCCAGCCTCCCCGATCGTCGGAACCGTAAAGCCGCCGGTCAGGTTCTCTGG
650 TGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * ** * * *
12624061 AGATGCTCCGGCGATGGTGCCCCGTTGAAGAAAAATGTGGCACCAGCACATGCCCTAGCCCAGCA
714 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
* *
12624126 TGTGCTAG-CGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
779 TGTGCT-GCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
12624190 TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-CTATGGGGGCGCTCAGCT
843 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGTGCTCAGCC
* * * * * *
12624249 GGCCAGAGGGGCGGGTTGCGCAAGCCGGGGATCG-GTCGGGTCCTCCTTTGCGTGCTGCTAATCC
1 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCGTGCTACTGATCC
** * * * *
12624313 TGCTGTTGTAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAA
65 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
12624378 CCGACGAAACGAACGGGCGGACGGGTGGGCGGGCATTACGCCGGCCAAAGAGACGGGATGCGCAA
130 CCGACGAAACGAGC-GGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
12624443 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTACCAATGCCA
193 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
*
12624508 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
258 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * ** * * *
12624573 GACTCGTTTTCTATTTTTCACGATCTTCGAAACGTTTTATGATTCAAAATTTTTTAAAATTTTTT
323 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* **
12624638 CAGAAGGAGTTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAA
388 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
12624702 CAGTTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGATCATTTGAAAAAAGTGTCCCTATTTC
453 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
12624767 AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
518 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
12624832 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACAT
583 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
12624897 CATGTGCGAACACCCCCCCCGG-CCCCCCGATCACCGGAACCCCAATGCTGCCGGTCAGGTTCTC
648 CATGTGCG--CACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
12624961 CGGTGATGCT-CTAGCGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATG-CCAAGCC
711 CGGCGATGCTCCGA-CGATGGTGCCCCGA-CGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
*
12625023 CAGCATGTGCTGCCGCAACCCT---T---G---G---TT---C--GG--T---CT--G-AT-CTT
774 CAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* ** ** *
12625062 AGATTGGGAATGAACTCCACATGCCTAAGTCAACCCACGAAACGAGTATGGGGGTGCTCAGCC
839 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * * * * *
12625125 GGCCAGAGGGGCGGGTTGCGTAAGTCAGGGATCGACAGGGTCCTCCTTTGCGTGCTGCTAATCCT
1 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTACTGATCCT
** * * * *
12625190 GCTGTTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCATACGCCTAAGCCAAC
66 GCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
** *
12625255 CGACGAAACGAGC-G-GGCGAACGGGC-GG----ACG--GGCCAGAGAGACGGGATGCGTAAGCC
131 CGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
12625311 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTATGTGCCAATGCCATTT
196 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* * *
12625376 TTATGGCTTGCAAATTCATACAATGG-CCCTGAAGCCTTCACGAGAAGTTTCATGGCAAGACGAC
261 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
12625440 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTGAAAATTTTTTTGG
326 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGG
* *
12625505 AAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCA-AAAACA
391 -AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-A
*
12625569 AATTCAGC-AGAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
454 AATTCAGCTA-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
12625633 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
518 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
12625698 CTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACAT
583 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * * *
12625763 GATCTGCGCACACCGCCCCGG-CCCCCCGATTGCCGAAATCCCAATGCCGCCAGTTAGGTTCTCT
648 CATGTGCGCACACC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
*
12625827 GGCGATG-TGCC--C-A--G-G---C-A--ATGAAAAATGCGACACCAGCACATGCCCGAGCCCA
712 GGCGATGCT-CCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCA
** * * * * *
12625879 GCATGTGCTGGTGCAACCCTCAGTCTGGTTCGATCTTAGACAGGGAATGAACTCCGTATGCTTAG
776 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
12625944 ACAGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGCGTGTGCGGGTGCTCAGTC
841 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * *
12626005 GGCCAGAAGGGCGGGATGCACAAGCCAGGGATCGA-TCGAGTCCCACTCTGCATGCTA-TCGAT-
1 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCGTGCTACT-GATC
* * * * * * * *
12626067 CTAGCTGCTGCAACCCTCAGTTTC-ATCCAATCCTAGTCTGGGAATGAACTCCTTATGCCTAAGC
64 CT-GCTGCCGCAACCCTC-GATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
12626131 CAACCGAGGAAACGAGCGGGCGAGCAGGCGGGCAGGCACTACGTCGGCCAAAGAGATGGGATGTG
127 CAACCGACGAAACGAGC-GGCG-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
12626196 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATT
190 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
12626261 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
255 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * *
12626326 GATGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTATAATTT
320 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
* * *
12626391 TTTC-GACAAGAGTTTTGGCGCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC
385 TTTCGGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
12626455 AAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCA
449 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
12626520 TTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAGGGGTG
514 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * *
12626585 TGAGTTTTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGACAAGTACTAGCACCCATCGC
579 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
12626650 A-ATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCAGAACCCCAATGCTGCCGGTCAGGTTC
644 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * *
12626714 TCCGACGATGCTCCGACGATGGTGCCCCGGCAAAGGAAAATGTGGCACCAGCACATGCCGGAGCC
709 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
* * * *
12626779 CAGCATGTGCCGCCGTAACCCTCGGTCTGATCCTATCTTAGACTGGGAATGAACTCCGTATGCTT
774 CAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
12626844 AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTCAGCC
839 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * * *
12626907 GGCCAGAGGGGCGGGATGTGCAAGCTGAGGATCG-GTCGGGTCCGCCTCTGCATGCT-GTCGATC
1 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCGTGCTACT-GATC
** * * * * * * *
12626970 CTGCTATCACAACCCTTGGTCTGGTCTGATCTTAGATTGGGAATGTACTCCGTATGCCTAAGCCA
64 CTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * ** * *
12627035 ACCAACAAAATGAGTGGGCGGGCAGGCGGGCGGGCACTACGTCAACCAGGGAGACGGGATGCGTA
129 ACCGACGAAACGAG-CGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
12627100 AGCCGTGGATCGATAGGGTGGCAAGTGGGTTTAGGCACATCTTCATATTTATACATGCCAATGCC
192 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
12627165 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
257 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * * *
12627230 CGACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTGCGGTTTGAGATTTTTTCAAATTTTT
322 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
** * *
12627295 TCAAAAGGAGATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
387 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
12627360 AAAATTCAGCTAAAAACTC-AGAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATT
452 AAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
12627424 CCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATATCAAATGCTCTTTAAGCGGGCGTG
516 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
12627489 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA-
581 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
12627553 ATTATGTGCGCACACCCCCCGGCCCCCTCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTTTC
646 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
12627618 CGGTGATGCT-CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCA
711 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCA
* ** *
12627682 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATTCACTTCGTATGCTTAG
776 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * *
12627747 ACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAATGAGCGTGTGAGCGTTCAGCC
841 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * *
12627808 GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-AATCGGGTCCCCCTCTCCGTGCTGCCGATCC
1 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCGTGCTACTGATCC
* * ** * * * *
12627872 TGCTACCACAAAACTCGATCAGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAA-CCAA
65 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
12627936 TCGACGAAACGA------GTGGGCAGGCGGGCACTATGCCGGCCAGAGAGACGAGATGTGCAAGC
130 CCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
12627995 CATGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATT
195 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
12628060 TTTATGGCTTCTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
260 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
12628125 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTC-ATGATTTTTTAAAATTTTTT-
325 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTC
* *
12628188 GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAA
389 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
12628253 AATTCAGTTAAAAACTC-ATAGTGTACAAGATTTTGTGACTATTTGAAAAAAAGTGTC
454 AATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTC
12628310 GCAACAAACA
Statistics
Matches: 7541, Mismatches: 828, Indels: 317
0.87 0.10 0.04
Matches are distributed among these distances:
853 23 0.00
854 26 0.00
856 2 0.00
857 1 0.00
859 1 0.00
860 2 0.00
862 1 0.00
863 53 0.01
864 99 0.01
865 204 0.03
866 201 0.03
867 3 0.00
868 135 0.02
869 2 0.00
871 5 0.00
872 325 0.04
873 4 0.00
874 5 0.00
875 80 0.01
876 354 0.05
877 5 0.00
878 2 0.00
879 6 0.00
880 167 0.02
881 6 0.00
882 1 0.00
883 5 0.00
884 7 0.00
885 5 0.00
887 3 0.00
888 230 0.03
889 30 0.00
890 378 0.05
891 440 0.06
892 319 0.04
893 2 0.00
895 1 0.00
896 5 0.00
897 1 0.00
898 465 0.06
899 435 0.06
900 598 0.08
901 1326 0.18
902 1302 0.17
903 267 0.04
904 7 0.00
905 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTACTGATCCT
GCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
Found at i:12621523 original size:26 final size:26
Alignment explanation
Indices: 12621494--12621546 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12621484 CCGGTCTGAT
12621494 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12621520 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12621546 C
1 C
12621547 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12622424 original size:26 final size:26
Alignment explanation
Indices: 12622395--12622447 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12622385 CCGGTCTGAT
12622395 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12622421 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12622447 C
1 C
12622448 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12624196 original size:26 final size:26
Alignment explanation
Indices: 12624157--12624209 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12624147 CTGGTCCGAT
* *
12624157 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12624183 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12624209 C
1 C
12624210 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:12625949 original size:26 final size:26
Alignment explanation
Indices: 12625913--12625965 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12625903 CTGGTTCGAT
12625913 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
12625939 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
12625965 C
1 C
12625966 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:12626851 original size:26 final size:26
Alignment explanation
Indices: 12626815--12626867 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12626805 CTGATCCTAT
12626815 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12626841 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12626867 C
1 C
12626868 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12627765 original size:26 final size:26
Alignment explanation
Indices: 12627716--12627768 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12627706 CCGGTCCGAT
* ** *
12627716 CTTAGATTGGGAATTCACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12627742 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12627768 C
1 C
12627769 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12630057 original size:26 final size:26
Alignment explanation
Indices: 12630021--12630073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12630011 CTGGTGTGAT
* *
12630021 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
12630047 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
12630073 C
1 C
12630074 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:12630953 original size:26 final size:26
Alignment explanation
Indices: 12630917--12630969 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12630907 CTGGTGTGAT
* *
12630917 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
12630943 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
12630969 C
1 C
12630970 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:12631446 original size:896 final size:897
Alignment explanation
Indices: 12629620--12637943 Score: 10557
Period size: 897 Copynumber: 9.4 Consensus size: 897
12629610 NNNNNNNNNN
* * *
12629620 ACTTGGTAGACGTGGATCCCTTGTATTTTTGTCGGCATGCACAAAATAATTCAGCTAGAAACTCG
1 ACTTGGTAGACGT-GAT-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
12629685 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
64 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
12629750 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGGGGTTTGATGAGG
129 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
12629815 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCCG
194 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * * * *
12629879 GCCCGCTGATCGCCGAAACCCCATGCTGTCGGTCATGTTCTCCGGCGATGCTCTGGCAATGGTGC
259 GCCCCCTGATCGTCGGAACCCCATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG-
* * * * * * *
12629944 CCCCGGCGAAGAAAAATGCGACACCAACACATGCTCGAGCCTAGCATGTGCTACCACAACCCTCA
323 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
12630009 GTCTGGTGTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAATGGGAATGAACTCCGTATGC
388 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
** * * *
12630074 CTAAGTCAACTAACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGTGGGATGCACAAGCC
453 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * *
12630139 GGGGATCGGTTGGGTCCCCCTCTGCGTGCTGCTGATTCGGTTACCACAACCCTCGGTCCGGTCCA
518 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTCGGTCCGGTCCA
* *
12630204 ATCTTAGACTGGGAATAAAGTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCG
583 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCG
* * *
12630269 GGCACTACGTCAGCCAGAGAGGCGGGATGCGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTT
648 GGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
12630334 AGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTTGTAAATTCATACAATGG-
713 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC-TTGTAAATTCATACAATGGT
12630398 CCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
777 CC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
12630463 AAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCGA
841 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
* *** *
12630520 ACTTGGTAGATGTGATCCTTGTATTTTT-TTTTTATGCCCAAAAAAATTCAGCTAAAAACTCGAA
1 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
12630584 GTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
66 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
12630649 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
131 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
12630714 TAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCCGGC
196 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * * *
12630778 CCGCTGATCGCCGAAACCCCATGCTGTCGGTCATGTTCTCCGGCGATGCTCTGGCAATGGTGCCC
261 CCCCTGATCGTCGGAACCCCATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
* * * * * * *
12630843 CGGCGAAGAAAAATGCGACACCAACACATGCTCGAGCCTAGCATGTGCTACCACAACCCTCAGTC
326 CGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
12630908 TGGTGTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTA
391 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
** * * *
12630973 AGTCAACTAACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGTGGGATGCACAAGCCGGG
456 AGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * *
12631038 GATCGGTTGGGTCCCCCTCTGCGTGCTGCTGATTCGGTTACCACAACCCTCGGTCCGGTCCAATC
521 GATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTCGGTCCGGTCCAATC
* *
12631103 TTAGACTGGGAATAAAGTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGGC
586 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGGC
* * *
12631168 ACTACGTCAGCCAGAGAGGCGGGATGCGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
651 ACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
12631233 CACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTTGTAAATTCATACAATGG-CCT
716 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC-TTGTAAATTCATACAATGGTCC-
12631297 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTCTATTTTTCACGATTTTTGAA
779 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTTGAA
*
12631362 ACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
843 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
* ***
12631417 ACTTGGTAGATGTGATCCTTGTATTTTT-TTTTTATGCAC-AAAAAATTCAGCTAAAAACTCGAA
1 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
12631480 GTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
66 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
12631544 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
131 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
12631609 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCAG-ACACCCCCCGG
196 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACACCCCCCGG
* * * **
12631673 CCATCCCCTAAT--TCCGGAACCCCAATGCCG-C---C-GG---T-CAGC-AT-CTTCGATGATG
260 -C--CCCCTGATCGT-CGGAACCCC-ATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
* * * *
12631725 GTGCCCCGATGAAGAAAAATACGACACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC
320 GTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
12631790 TC-GTC----C-GATC-----C---------A------AT-CTTAGACTGGGAATGAACTCCGTA
385 TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * **
12631828 TGCCAAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGAAGGATGCGCAA
450 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * *
12631893 GCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCTACAACCCTCGGTCCGAT
515 GCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTCGGTCCGGT
* * *
12631958 CCAATCTTAGACTGGGAATGAACTCTGTATGCCT-AGCCAACCAACGAAAAGAGCGGGCGGATGG
580 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-TGG
* * * * *
12632022 GCGGGCTGGCACTATGCCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGG
641 GCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * ** * *
12632087 TGGGTTTTGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTAAGGCTTGTAAATTCCTAC
706 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
12632152 AATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCATTTTCTGTTTTTCACGA-
771 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
12632216 TATTCAAAGCTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
836 TTTTGAAA-CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
* * *
12632279 ACTTCGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAA
1 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
12632344 GTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGG
66 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
12632409 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
131 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
12632474 TAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCACACA-CCCCCGGC
196 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * ***
12632538 CCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCAATGATGGTGCC
261 CCCCTGATCGTCGGAACCCC-ATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* * *
12632603 CCGACGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTGTCACAA--C-C---
325 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
12632662 C---TC-GA---T---C------TG-A-TCCG-AT-CTGAGACTGGGAATGAACTCCGTATGCCT
390 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
12632707 AAGTCAACCCACAAAATGAGCTTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCAG
455 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * ** ** * **
12632772 GGAACGGTCGGGTCCCCCTCTACGTACTG-TGAATCCTGCTGCCGTAACCCTCACTCTGGTCTGA
520 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCTG-ATCCTGCTACCACAACCCTCGGTCCGGTCCAA
* * *
12632836 TCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGTGG
584 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGC----GG
* * *
12632901 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGG
645 GCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
12632966 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
710 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
12633031 GTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
775 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
12633096 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAA
840 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
* * * * *
12633154 ACATGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTTAGCTAAAAACTTGAA
1 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
12633219 GTGTACAAGATTTTGTGGCCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGG
66 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
12633284 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTATGATGGGGGA
131 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
12633349 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGGC
196 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * *
12633413 CACCCCGATCGTCGGTACCACAATGCCGTCGGTCAGGTTCTCCGACGATACTCCGACGATGGTGC
261 C-CCCTGATCGTCGGAACC-CCATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* ** * * * *
12633478 CCCGACGAAGAAAAATGCAGCACCAACACATGTTCGAGCCCAGCTTGTGCTGCTGAAACCCTTGG
324 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
** * **
12633543 TCTGGTCCAATCTTAGACTGGGAGTGAACTCCAAATGCTTAGACTGGGAATGAACTCCGTATGCC
389 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
12633608 TAAGTCAACCCACGAAATGAGCGTACGGTTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCG
454 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * **
12633673 GGGATCGGTCGGGTCCCCCTCAGCATGCTG-TCAATCCTGCTGCTACAACTCTCGGTCCGGTCTG
519 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCACAACCCTCGGTCCGGTCCA
12633737 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GGG-GGGCG
583 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCG
* *
12633798 GG--CT-C-T-----------AC---AT-CG---G-C-TAGA--GAGACGGGTGGTAGGTGGGTT
648 GGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGGTGGTAGGTGGGTT
* * *
12633837 TAGGCACAACTTTATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
712 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
12633902 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGCTTTTCAG
777 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-TG
* * ** *
12633967 AAA-TTTTTACGGTTCGGGATTTTTTTAAA-TTTTTTCAAATGGATTTTTGGCCCCAA
841 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAA-GGAGTTTTGGCCCCAA
* * *
12634023 ACTTGGT--ATGTGGTCCTTGTATTTTTGTTGGCATGCACAAGAAAATTCAGCTAAAAACTCGAA
1 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
12634086 GTGTACAAGATTTAGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTCAATGGCTACTGG
66 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
12634151 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
131 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
12634216 TAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCCCATCATGTGCACACACCCACCCCC
196 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--CGCA--CA-CCCC
* *
12634281 CCGGCCCCCCGATCGTCGGAAACCCCAATGCCGTCGGTCATGTTCT-C--CGA--------CGAT
256 CCGGCCCCCTGATCGTCGG-AACCCC-ATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT
* ** * * *
12634335 GGTGCCCCGGCGAAGAAAAATTAGGCGCGAACACATGCCCGAACCCAGCATGTGCTGCCGCAACC
319 GGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
** *
12634400 CTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
384 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * *
12634465 ATGCCTAAGTCAACCCACGAAACGAGCGCGAGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCA
449 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * ** *
12634530 AGCCGGGGGTCGGTCGGGTCCCCCTTTACGTGCT-ATCGATCCTGCTACCGCAACCCTCATTCTG
514 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCACAACCCTCGGTCCG
* * * * * ** *
12634594 ATCAAATCATAGACTGTGAATGAACTCCATATGCCTAA-CCAACTAACGAAACGTGC----GGGC
578 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGC
*
12634654 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
643 GGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *** **
12634719 GGTTTAGGCACATCTTCATTTTTCTTTGTGCCAATGCCATTTTTATGAATTGTAAATTCATACAA
708 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
12634784 TGGTCCCTTAAGCCTTC-CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
773 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *
12634848 TTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGGTTTGGCCCCAA
838 TTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
* *
12634908 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTTAGCTAAAAACTCGAA
1 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
12634973 GTGTACAAGATTTTGTGGCCATTTGAAAAAAGTCTCCCTATTTCAGACACTTTAATGGCTACTGG
66 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
12635038 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGGGGGA
131 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
12635103 TAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGC
196 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* ** ** *
12635168 CCCCTCGATCGTCGGTACCATAATAACGTTGGTCAGG-T-T----C--T-CT--GGCGATGGTGC
261 CCCCT-GATCGTCGGAACC-CCATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
*
12635222 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGG
324 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
12635287 TCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
389 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
12635352 TAAGTCAACTCACGAAACGAGCGTGCGGGTGCTCAACCGACCAGAGGGGCGGGATGCGCAAGTCG
454 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * * *
12635417 GGGACCGATCGGGTCCCCATCTGCATGCTG-TCGATCCTACTACCGCCACCCTCAGTCCGGTCCA
519 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCACAACCCTCGGTCCGGTCCA
* * *
12635481 ATCTTAGACTGGGAATGAACTCCATATTCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
583 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGTGGGCG
* * *
12635546 GGCGGGCACTACGTCGGCTAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
644 GGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
12635611 GTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
709 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
12635676 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTTAC------
774 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * *
12635735 ---AA-TTTTTACGGTTCGGGA-TTTTTAAAATTTTTTCGAAAGGAGGTTTGGCCCCAA
839 TGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
* * * *
12635789 ACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTTAGCTAAAAACTCAAA
1 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
12635854 GTGTACAAGATTTTGTG-CCAATTTGAAAAAAGTCTGCCCATTTTAGACACTTTAATGGCTACTG
66 GTGTACAAGATTTTGTGACC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
12635918 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGGGGG
130 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
12635982 GTAGGGGGCCAATATAA--G----GTTCCAGCA-CCATCACACATCATGTGCGTACAACCCCCTC
195 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCC-C
* * * * ** *
12636040 GACCCCCCTGATCATCGGAACACCAATGCCGTCGGTTAGGTTCTCCGATGATGCTCCGACGATGG
258 G-GCCCCCTGATCGTCGGAAC-CCCATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGG
* * *
12636105 TGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGTCCAGCATGTGCTGCCGTAACCCT
321 TGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * *
12636170 TGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTACGTAT
386 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * *
12636235 GCCTAAGTCAACCCATGTAACGAACATGCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCACAAG
451 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* ** * * * * * ** * ** *
12636300 CCGGGGATCTGTCGGGTCCCTATCTACATGCTACGGATCCTGCTGCCACAAAACTCAGTTTGATC
516 CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTCGGTCCGGTC
* * * * * *
12636365 CGATCTCAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAATGAATGGGCGAGTGGG
581 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---GCGGGTGGG
* * * *
12636430 TGGTCGGGCACTACGTC-GACTAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGG
642 CGGGCGGGCACTACGTCAG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
12636494 TGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCCTGTAAATTCATAC
706 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
** * * * *
12636559 AACAGTCCCTTAAGCCTTCATGTTAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTCCACGAT
771 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* ** * *
12636624 TTTTAAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTTGCAAGGAGTTTTGGCCCCAA
836 TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
** *
12636686 ACATTTCTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
1 AC--TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
12636751 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAATGGCTATT
64 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
12636816 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGACGAGG
129 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
12636881 GATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACAACCCCCT
194 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCC-
* * * * * * * *
12636946 CGACCCCCCCGATCATTGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
257 CG-GCCCCCTGATCGTCGGAACCC-CATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
* * * * * ** *
12637011 GCGCCCCGACGAAGAGAAATGCGGCACTAGCACATGCCCGAGCCCAACATGTGCTGTTGCAACCT
320 GTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* ** *
12637076 TTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGGGAATGAACTCCGTA
385 TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * * *
12637141 TGCCTAAATCGACCCATGAAACGAGCGTGTGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCACAA
450 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * *
12637206 GTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACTGATCTTGCTACCACATCCCTTGGTCTGGT
515 GCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTCGGTCCGGT
** *
12637271 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGT----GG
580 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGG
* * * * * * *
12637332 GTGGGCACTACGCCAACCAAAGAGACGGGATGCGCAAGTCGTGGATCGATAGAGTGATAGGTGGG
645 GCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
** * * *
12637397 TTTAGGCACATCTTCATATTTCTATATGCCAATACCATTTTTGTGGCTTGTAAATTCATACATTG
710 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
12637462 GTCCCTTAAGCCTTCACGTCAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
775 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
** **** ** *
12637527 GAAACTTTTTGTGGTTCCTCTTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAA
840 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
* * * *
12637585 ACATGGCAGACGTGATCCTTGAATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
1 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
12637650 GTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGG
66 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
12637715 CAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
131 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
12637780 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCAC-CCCCCTGGC
196 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-
* * * * * *
12637844 CCCCCCGATCATCGGAACGCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
260 CCCCCTGATCGTCGGAAC-CCCATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * *
12637909 CCC-AGCAAATAAAAATGTGGCACTAGCACATGCCC
324 CCCGA-CGAAGAAAAATGCGGCACCAACACATGCCC
12637944 AAGAGACGGG
Statistics
Matches: 6628, Mismatches: 613, Indels: 372
0.87 0.08 0.05
Matches are distributed among these distances:
860 21 0.00
861 198 0.03
862 364 0.05
863 70 0.01
864 163 0.02
865 154 0.02
866 1 0.00
867 224 0.03
868 13 0.00
869 188 0.03
870 13 0.00
871 10 0.00
872 20 0.00
873 120 0.02
874 179 0.03
875 512 0.08
876 121 0.02
877 3 0.00
878 2 0.00
879 5 0.00
880 49 0.01
881 189 0.03
882 315 0.05
883 28 0.00
884 6 0.00
885 101 0.02
886 557 0.08
887 228 0.03
888 65 0.01
889 3 0.00
890 4 0.00
891 144 0.02
892 41 0.01
893 1 0.00
894 96 0.01
895 144 0.02
896 585 0.09
897 666 0.10
898 23 0.00
899 388 0.06
900 61 0.01
901 2 0.00
902 186 0.03
903 5 0.00
906 11 0.00
907 349 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
CCCCTGATCGTCGGAACCCCATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
CGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
GATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTCGGTCCGGTCCAATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGGC
ACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
TTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
Found at i:12634454 original size:26 final size:26
Alignment explanation
Indices: 12634416--12634468 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12634406 CCAGTCTGAT
12634416 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12634442 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12634468 C
1 C
12634469 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12635334 original size:26 final size:26
Alignment explanation
Indices: 12635298--12635350 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12635288 CCGGTCCGAT
12635298 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12635324 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12635350 C
1 C
12635351 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12636213 original size:26 final size:26
Alignment explanation
Indices: 12636184--12636236 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12636174 CTGGTCCGAT
12636184 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTAC-GTATG
*
12636210 CTTAGATTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
12636236 C
1 C
12636237 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:12637125 original size:26 final size:26
Alignment explanation
Indices: 12637092--12637142 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
12637082 CAGTCTGATC
12637092 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
12637118 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
12637143 CCTAAATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:12637536 original size:899 final size:897
Alignment explanation
Indices: 12633821--12637943 Score: 5396
Period size: 886 Copynumber: 4.6 Consensus size: 897
12633811 CTAGAGAGAC
* * *
12633821 GGGTGGTAGGTGGGTTTAGGCACAACTTTATATTTTTGCATGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
12633886 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * * *
12633951 TTTTCATGCTTTTCAGAAA-TTTTTACGGTTCGGGATTTTTTTAAA-TTTTTTCAAATGGATTTT
131 TTTTCATGATTTTTA-AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAA-GGAGTTT
* * *
12634014 TGGCCCCAAACTTGGT--ATGTGGTCCTTGTATTTTTGTTGGCATGCACAAGAAAATTCAGCTAA
194 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
12634077 AAACTCGAAGTGTACAAGATTTAGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTCAAT
259 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
12634142 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
324 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
12634207 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCCCATCATGTGCACACA
389 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* ** * *
12634272 CCCACCCCCCCGGCCCCCCGATCGTCGGAAACCCCAATGCCGTCGGTCA-----T-----G-TTC
454 CCC-CCTCGAC--CCCCCCGATCATCGG-AA-CCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* ** * * *
12634326 TCCGACGATGGTGCCCCGGCGAAGAAAAATTAGGCGCGAACACATGCCCGAACCCAGCATGTGCT
514 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT
* *
12634391 GCCGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAAT
579 GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
12634456 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGAGGGTGCTCAGCCGACCAGAGGGGCG
644 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCG
* * * * * *
12634521 GGATGCGCAAGCCGGGGGTCGGTCGGGTCCCCCTTTACGTGCTA-TCGATCCTGCTACCGCAACC
709 GGATGCACAAGCCGGGGATCGGTCGGGTCCCCATCTACATGCTACTCGATCCTGCTACCACAACC
* * * * ** *
12634585 CTCATTCTGATCAAATCATAGACTGTGAATGAACTCCATATGCCTAA-CCAACTAACGAAACG-T
774 CTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAG
* *
12634648 GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
839 GCGGGCGGGCGGGCACTACGTCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *** **
12634707 GGGTGGTAGGTGGGTTTAGGCACATCTTCATTTTTCTTTGTGCCAATGCCATTTTTATGAATTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
12634772 AAATTCATACAATGGTCCCTTAAGCCTTC-CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
*
12634836 TTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGGTTTG
131 TTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTG
* *
12634901 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTTAGCTAAAA
196 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
12634966 ACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTCTCCCTATTTCAGACACTTTAATGG
261 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
12635031 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGA
326 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
12635096 TGGGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
391 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * * ** *
12635161 CCC-CGGCCCCCTCGATCGTCGGTACCATAATAACGTTGGTCAGGTTCT----C--TG----G-C
456 CCCTCGACCCCCCCGATCATCGGAACC-CAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGAC
*
12635214 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTA
520 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCA
* *
12635279 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
585 ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* *
12635344 CGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGTGCTCAACCGACCAGAGGGGCGGGATGC
650 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGC
* * * * * * * * *
12635409 GCAAGTCGGGGACCGATCGGGTCCCCATCTGCATGCT-GTCGATCCTACTACCGCCACCCTCAGT
715 ACAAGCCGGGGATCGGTCGGGTCCCCATCTACATGCTACTCGATCCTGCTACCACAACCCTCAGT
* * *
12635473 CCGGTCCAATCTTAGACTGGGAATGAACTCCATATTCCTAAGCCAACCGACGAAACGAGCGGGCG
780 CTGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA-------
* *
12635538 GGCGGGCGGGCGGGCACTACGTCGGCTAAAGAGACGGGATGCGCAAGCCGTGGATCGATA
838 GGCGGGCGGGCGGGCACTACGTCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
12635598 GGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
*
12635663 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG-----T-T
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
12635722 TTTT-AT--TTTTTACAA-TTTTTACGGTTCGGGA-TTTTTAAAATTTTTTCGAAAGGAGGTTTG
131 TTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTG
* * *
12635782 GCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTTAGCTAAAA
196 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * * *
12635847 ACTCAAAGTGTACAAGATTTTGTG-CCAATTTGAAAAAAGTCTGCCCATTTTAGACACTTTAATG
261 ACTCGAAGTGTACAAGATTTTGTGACC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
12635911 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTG
325 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * * *
12635975 ATGGGGGGTAGGGGGCCAATATAA--G----GTTCCAGCA-CCATCACACATCATGTGCGTACAA
390 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A
* * *
12636033 CCCCCTCGACCCCCCTGATCATCGGAACACCAATGCCGTCGGTTAGGTTCTCCGATGATGCTCCG
454 CCCCCTCGACCCCCCCGATCATCGGAAC-CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* *
12636098 ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGTCCAGCATGTGCTGCCG
518 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCG
* * ** * *
12636163 TAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAAC
583 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * * *
12636228 TACGTATGCCTAAGTCAACCCATGTAACGAACATGCGGGCGCTCAACCGGCCAAAGGGGCGGGAT
648 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGAT
* * * * **
12636293 GCACAAGCCGGGGATCTGTCGGGTCCCTATCTACATGCTAC-GGATCCTGCTGCCACAAAACTCA
713 GCACAAGCCGGGGATCGGTCGGGTCCCCATCTACATGCTACTCGATCCTGCTACCACAACCCTCA
* * * * *
12636357 GTTTGATCCGATCTCAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAATGAATGGG
778 GTCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACG-A--GG
* * * *
12636422 CGAGTGGGTGGTCGGGCACTACGTCGACTAGAGAGACGGGATGCGCAAGCCGTGGATCAATA
840 CG-G-GCG-GG-CGGGCACTACGTCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
12636484 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCCTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
** * * *
12636549 AAATTCATACAACAGTCCCTTAAGCCTTCATGTTAAGTTTCATGGCAAGACGACTCGTTTTTTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * ** * *
12636614 TTTCCACGATTTTTAAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTTGCAAGGAGTTTTG
131 TTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTG
**
12636679 GCCCCAAACATTTCTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
196 GCCCCAAAC--TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
12636744 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAAT
259 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
12636809 GGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTT
324 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
12636874 GACGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACA
389 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-
* *
12636939 ACCCCCTCGACCCCCCCGATCATTGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
453 ACCCCCTCGACCCCCCCGATCATCGGAACCC-AATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
* * * * * **
12637004 GACGATGGCGCCCCGACGAAGAGAAATGCGGCACTAGCACATGCCCGAGCCCAACATGTGCTGTT
517 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCC
* * * *
12637069 GCAACCTTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGGGAATGAA
582 GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * *
12637134 CTCCGTATGCCTAAATCGACCCATGAAACGAGCGTGTGGGCGCTCAGCC-AGCCAGAGGGGTGGG
647 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGA-CCAGAGGGGCGGG
* * * * *
12637198 ATGCACAAGTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACT-GATCTTGCTACCACATCCCT
711 ATGCACAAGCCGGGGATCGGTCGGGTCCCCATCTACATGCTACTCGATCCTGCTACCACAACCCT
** * ** * *
12637262 TGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA-GC
776 CAGTCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGGC
* * * * *
12637326 GGGTGGGTGGGCACTACGCCAACCAAAGAGACGGGATGCGCAAGTCGTGGATCGATA
841 GGGCGGGCGGGCACTACGTCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * ** * *
12637383 GAGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTATATGCCAATACCATTTTTGTGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * *
12637448 AAATTCATACATTGGTCCCTTAAGCCTTCACGTCAAGTTTCATTGCAAGACGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* ** **** * *
12637513 TTTTCATGATTTTTGAAACTTTTTGTGGTTCCTCTTTTTTTAAAA-TTTTTTCAGAAGGATTTTT
131 TTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGA-AAGGAGTTTT
* * * *
12637577 GGCCCCAAACATGGCAGACGTGATCCTTGAATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
195 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
12637642 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGAAACTTTAATG
260 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
12637707 GCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
325 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
12637772 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCAC-C
390 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * **
12637836 CCCCT-GGCCCCCCCGATCATCGGAACGCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGA
455 CCCCTCGACCCCCCCGATCATCGGAAC-CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
* * * * *
12637900 CGATGGTGCCCC-AGCAAATAAAAATGTGGCACTAGCACATGCCC
519 CGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAACACATGCCC
12637944 AAGAGACGGG
Statistics
Matches: 2862, Mismatches: 304, Indels: 134
0.87 0.09 0.04
Matches are distributed among these distances:
873 21 0.01
874 14 0.00
875 33 0.01
876 1 0.00
878 1 0.00
880 46 0.02
881 192 0.07
882 300 0.10
883 37 0.01
884 5 0.00
885 100 0.03
886 539 0.19
887 231 0.08
891 145 0.05
892 30 0.01
893 2 0.00
894 89 0.03
895 16 0.01
896 12 0.00
897 266 0.09
898 6 0.00
899 363 0.13
900 47 0.02
901 2 0.00
902 2 0.00
903 3 0.00
906 11 0.00
907 348 0.12
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCTCGACCCCCCCGATCATCGGAACCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACG
ATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCA
CAAGCCGGGGATCGGTCGGGTCCCCATCTACATGCTACTCGATCCTGCTACCACAACCCTCAGTC
TGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGGCGGGCG
GGCGGGCACTACGTCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATA
Found at i:12638460 original size:591 final size:593
Alignment explanation
Indices: 12637351--12638533 Score: 1806
Period size: 591 Copynumber: 2.0 Consensus size: 593
12637341 ACGCCAACCA
12637351 AAGAGACGGGATGCGCAAGTCGTGGATCGATAGAGTGATAGGTGGGTTTAGGCACATCTTCATAT
1 AAGAGACGGGATGCGCAAGTCGTGGATCGATAGAGTGATAGGTGGGTTTAGGCACATCTTCATAT
* * * * *
12637416 TTCTATATGCCAATACCATTTTTGTGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGT
66 TTCTACATGCCAATACCATTTTTATGGCTTGGAAATTCATACAATGGTCACTTAAGCCTTCACGT
* * * ** **
12637481 CAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCCT
131 CAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCACGATTTTCAAAACTTTTTACGGTTCCT
* * * *
12637546 CTTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACATGGCAGACGTGATCCTTGAATTT
196 CATTTTTTAAAATATTTTCAGAAGGAGTTTTGGCCCCAAACATGGCAGACGAGATCCTTGAATTT
* * *
12637611 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
261 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGAACAAGATTTTGTGACCATTTGA
12637676 GAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGC
326 GAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGC
* *
12637741 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
391 TCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
12637806 CCAGCACCCATCGCATATCATGTGCGCACCCCCCTGGCCCCCCCGATCATCGGAACGCCAATGCC
456 CCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCC
* *
12637871 GCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC-CCC-AGCAAATAAAAATGTGGCACTA
521 GCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGT-CACCCGA-CAAAGAAAAATGTGGCACCA
12637934 GCACATGCCC
584 GCACATGCCC
* * * *
12637944 AAGAGACGGGATGTGC-AGGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AAGAGACGGGATGCGCAAGTC-GTGGATCGATAGAGTGATAGGTGGGTTTAGGCACATCTTCATA
* * *
12638008 TTTTTACGTGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGT-ACTTAAGCCTTCACG
65 TTTCTACATGCCAATACCATTTTTATGGCTTGGAAATTCATACAATGGTCACTTAAGCCTTCACG
* * *
12638072 TGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTCCACGATTTTCAAAACTTTTTACGGTT-T
130 TCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCACGATTTTCAAAACTTTTTACGGTTCC
* * * * * *
12638136 TGGATTTTTTAAAA-ATTTTCGGAGGGAGTTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTAT
195 T-CATTTTTTAAAATATTTTCAGAAGGAGTTTTGGCCCCAAACATGGCAGACGAGATCCTTGAAT
12638200 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGAACAAGATTTTGTGACCATTT
259 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGAACAAGATTTTGTGACCATTT
* *
12638265 GA-AAACAGTGTCCCCATTTCAGACACTTTAATGGCT-TTGGCAGCAAACCTGTAAAATCTCAAA
324 GAGAAA-AGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
12638328 TGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAA
388 AGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAA
*
12638393 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAA
453 GTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGGCCCCCCCGATCACCGGAACCCCAA
* * *
12638458 TGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTCACCCGACGAAGAAAAATGTGGCCC
517 TGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTCACCCGACAAAGAAAAATGTGGCAC
12638523 CAGCACATGCC
582 CAGCACATGCC
12638534 TTAGCCCAGC
Statistics
Matches: 534, Mismatches: 50, Indels: 14
0.89 0.08 0.02
Matches are distributed among these distances:
590 123 0.23
591 231 0.43
592 82 0.15
593 98 0.18
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (593 bp):
AAGAGACGGGATGCGCAAGTCGTGGATCGATAGAGTGATAGGTGGGTTTAGGCACATCTTCATAT
TTCTACATGCCAATACCATTTTTATGGCTTGGAAATTCATACAATGGTCACTTAAGCCTTCACGT
CAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCACGATTTTCAAAACTTTTTACGGTTCCT
CATTTTTTAAAATATTTTCAGAAGGAGTTTTGGCCCCAAACATGGCAGACGAGATCCTTGAATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGAACAAGATTTTGTGACCATTTGA
GAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGC
TCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCC
GCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTCACCCGACAAAGAAAAATGTGGCACCAGC
ACATGCCC
Found at i:12639412 original size:118 final size:119
Alignment explanation
Indices: 12639212--12639430 Score: 334
Period size: 118 Copynumber: 1.8 Consensus size: 119
12639202 ATCAGGCGAT
*
12639212 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACC
1 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTACCGCAACC
*
12639277 CTGGGTCTGCTCCAATCTTAGACTGGGAATGGACTCTAGTGATGCTCCAGTGAC
66 CTGGGTCTGCTCCAATCTTAGACTGGGAATGAACTCTAGTGATGCTCCAGTGAC
** * *
12639331 GGTGCCCCGGTGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCTAGCATGTGCTACC-CTAAC
1 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTACCGC-AAC
* * *
12639394 CTTGGGTCTGGTCTAATCTTAGACTGGGAATGAACTC
65 CCTGGGTCTGCTCCAATCTTAGACTGGGAATGAACTC
12639431 CGTATGCTTA
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
117 1 0.01
118 68 0.76
119 21 0.23
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (119 bp):
GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTACCGCAACC
CTGGGTCTGCTCCAATCTTAGACTGGGAATGAACTCTAGTGATGCTCCAGTGAC
Found at i:12639447 original size:26 final size:26
Alignment explanation
Indices: 12639411--12639489 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
12639401 CTGGTCTAAT
12639411 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12639437 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12639463 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12639489 C
1 C
12639490 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12640417 original size:27 final size:27
Alignment explanation
Indices: 12640356--12640418 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 27
12640346 TGGAAGGAAT
12640356 TCCGTATGCTTAGACTGGCGAAGAAAC
1 TCCGTATGCTTAGACTGGCGAAGAAAC
*
12640383 TCCCTATGCTTAGACTGG-GAATTG-AAC
1 TCCGTATGCTTAGACTGGCGAA--GAAAC
12640410 TCCGTATGC
1 TCCGTATGC
12640419 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 3 0.09
27 28 0.88
28 1 0.03
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (27 bp):
TCCGTATGCTTAGACTGGCGAAGAAAC
Found at i:12641293 original size:26 final size:26
Alignment explanation
Indices: 12641255--12641307 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12641245 TCGGTTCAAT
12641255 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12641281 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12641307 C
1 C
12641308 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12642188 original size:26 final size:26
Alignment explanation
Indices: 12642152--12642204 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12642142 CTGCTCCAAT
*
12642152 CTTAGACTGGGAATGGACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
12642178 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
12642204 C
1 C
12642205 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:12643088 original size:29 final size:29
Alignment explanation
Indices: 12643046--12643111 Score: 116
Period size: 29 Copynumber: 2.3 Consensus size: 29
12643036 TAACCCTCGA
12643046 TCCGGTCTGATCTTAAACTT-AGAATGAAC
1 TCCGGTCTGATCTTAAACTTGA-AATGAAC
12643075 TCCGGTCTGATCTTAAACTTGAAATGAAC
1 TCCGGTCTGATCTTAAACTTGAAATGAAC
12643104 TCCGGTCT
1 TCCGGTCT
12643112 AGACCGGTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 35 0.97
30 1 0.03
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (29 bp):
TCCGGTCTGATCTTAAACTTGAAATGAAC
Found at i:12643970 original size:26 final size:26
Alignment explanation
Indices: 12643934--12643986 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12643924 CCCATCCGAT
*
12643934 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12643960 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12643986 C
1 C
12643987 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12645740 original size:26 final size:26
Alignment explanation
Indices: 12645711--12645763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12645701 CCGGTCCGAT
*
12645711 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12645737 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12645763 C
1 C
12645764 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12646662 original size:26 final size:26
Alignment explanation
Indices: 12646612--12646664 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12646602 CCTGTCCGAT
* **
12646612 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12646638 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12646664 C
1 C
12646665 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12647547 original size:26 final size:26
Alignment explanation
Indices: 12647511--12647563 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12647501 CTGGTCTGAT
12647511 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12647537 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12647563 C
1 C
12647564 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12650220 original size:26 final size:26
Alignment explanation
Indices: 12650184--12650236 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12650174 CCAGCCCGAT
12650184 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12650210 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12650236 C
1 C
12650237 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12651107 original size:902 final size:896
Alignment explanation
Indices: 12644682--12651321 Score: 8631
Period size: 901 Copynumber: 7.4 Consensus size: 896
12644672 ACATCATCGA
* * * * * *
12644682 AACCCCAATGTCGTCGGTCAGGTTCTCCAGCGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAA
* * * * *
12644747 TGTGACACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTA
66 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* * * *
12644812 GACTGGGAGTGAACTCCGTATGCTTAGACTCGAAATGAACTCTGTATGCCTAAGTCAACCCACGG
131 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-G
* * *
12644877 AAACGAGCGTGTGGGTGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CTGGG
195 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGG
* * * * *
12644941 TCCCCCTCTGTGTGCTACTGATCCTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGA
259 TCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * * * ** *
12645006 ATTAACTCCGTATGCCTAAGCCAACCAATGAAATGACCGGACGGGCAGGCGGTCGGGCACTACGC
324 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGAC--G-A-GCGGGCGGGCACTACGC
* *
12645071 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCT
385 CGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * ** *
12645136 TCATATTTCTACATGCCAATTCCATTTTTATTTCATGTAAATTCATACAATGGTCCCTTAAGCCT
450 TCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* ** *
12645201 TCACGTGAAGTTTCATGGCGAGACGAAC-CACTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
515 TCACGTGAAGTTTCATGGCAAGACG-ACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAC
* * * * *
12645265 AGTTCGAGATTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCCAAACATGGTAGACGTGATCCT
579 GGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCT
* ** *
12645330 TGTATTTTTTTGGCATGCACAAAAAAATTTGGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACC
644 TGTATTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
12645395 ATTTG-AAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
709 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
12645459 ACATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGC
774 AAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
12645524 CAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCACCGG
838 CAAGTACCAGCACCCATCGCACATCATGT--GCACACCCCCC-CGGCCCCCCCGATCGCCGG
* **
12645586 AACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAA
* * * *
12645651 TGCGACACCATCACAT-CCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCCGGTCCGATCTTA
66 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* *
12645715 GATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGA
131 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* ** * * **
12645780 AACGAGCGTGCGGGTGCTCAATCGGCCAAAAGGGCGGGATGAACAAGCCGGGGATCGATCGGGTC
196 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* * * * * * ** **
12645845 CCTCTCTGCGTGCTATCGATCCGGCTACCACAACCCTCAGTCCGGTTTGATCTTAGACTGGGAGC
261 CCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * * * *
12645910 GAACTCCATATGCCAAAGCCAACCGACGAAACGAGCGG-CCAG-GTGGACGGGCACTACGTC-AG
326 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGACGAGCG-GG-CGGGCACTACGCCGA-
* * *
12645972 CTAGAGAGACTGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
388 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
12646037 TATTTTTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
453 TATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
12646102 CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG-TTCTTCGAAACTGTTTACGAT
518 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT-TTCGAAACTTTTTACGGT
*** *
12646166 TCAAAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCATAGACGTGATCCTTGT
582 TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGT
* * * *
12646231 GTTTTTTTTGGCATGCACAAAACAGTTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGATCAT
647 -ATTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
12646296 TTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTCGCAGCAAACCTGTAAAATCTCA
711 TT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
12646361 AATGCTCTATAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCC
775 AATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
12646426 AAGTACCAGCACCCATCGCACATCAAGTGCACACACCCCCCCGGCCCCCCCGATCGCCGG
839 AAGTACCAGCACCCATCGCACATCATGTG--CACACCCCCCCGGCCCCCCCGATCGCCGG
* * *
12646486 AACCCCAATGCCGTCGGTCAGGTTCTCCGGTCATGCTCCGATGATGGTGACCCGACGAAGAAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAA
* * * * * * *
12646551 TGCGGCACTAACACATGCCCGAGCCCAACATGTGCTACTGCAACCCTCGATCCTGTCCGATCTTA
66 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* **
12646616 GATTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
131 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * ** *
12646681 AACGAGCATGCGGGTGCTCAACCGGCCAGAGGGGCAAGATGTGCAAGCCGGGGATCGATCGGGTC
196 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* ** * * * * * ** * *
12646746 CCCCTCTGCGTACTGGCAATCCTGCTACTGCAACCTTCAGTTTGGTCCAATCTTAGA-TCGAGAA
261 CCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGGAA
* * * *
12646810 TGAACTCCGTATGCCTAACCCAACCGACAAAACGAG-CGAGCGGATGGGTGGGCGGGCACTACGC
325 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGA-C-GA---GCGGGCGGGCACTACGC
* * *
12646874 ATG-CCAGAGAGACGGGATGCGCAAGTCGTGGATCGATA-GGTAGTAGGTGGGTTTAGGCACATC
385 -CGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
12646937 TTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
449 TTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
12647002 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTCAAAACTTTTTAC
514 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAC
* *
12647067 GGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCT
579 GGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCT
* * * *
12647132 TCTATTGTTGTTGGTATGCACAAAACAATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGAC
644 TGTATT-TTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
12647197 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
708 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
12647262 CAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGCCCAATATAAGGGC
773 CAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * * *
12647327 CAAGTACCAGCACCCATTGCACATCATGTGCGCACACACCCCAG-CCCCCCAATCGTCGG
838 CAAGTACCAGCACCCATCGCACATCATGTGCACAC-CCCCCCGGCCCCCCCGATCGCCGG
*
12647386 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGATGAAGAAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAA
* * * *
12647451 -GCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTA
66 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
*
12647515 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGA
131 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * **
12647580 AACGAGCGTACGGGCGCTCAGCCAGCCAGACGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTC
196 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* * * * * ** * * * ** *
12647645 CCCCTCTGTGTGTTGCTGATCTTGCTATCACAACCCTCGATCCGATATGATGTTAGACTGGGAAT
261 CCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* *
12647710 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGT-G--G-GCGGGCGGGCACTACGTCGGCCA
326 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGACGAGCGGGCGGGCACTACGCCGACCA
* *
12647771 AAGAGACGGGATGCGGAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
391 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** *
12647836 TTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGT
456 TTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * *
12647901 GAAGTTTCATGGCAAGACGACTCGTTTCCTATTTTTCATGATTTTATGAAACTTTTTGCGGTTCG
521 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-CGAAACTTTTTACGGTTCG
* * * * *
12647966 AGATTTTTTTAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATT
585 GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATT
* *
12648031 TTTGTTGGCATGCACAAAA-ACATTCAGCTAGAAACTCGAAGTGTATAAGATTTTGTGACCATTT
650 TTT-TTGGCATGCACAAAACA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
12648095 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAAT
713 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
12648160 GCTCTTTAAGGGGGTGTCAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAG
778 GCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * ** * *
12648225 TACCAGCACACATCACACATCATGTGCGCACACCCCACAAGCCTCCCCGATCGTCGG
842 TACCAGCACCCATCGCACATCATGT--GCACACCCCCCCGGCCCCCCCGATCGCCGG
* * ** * *
12648282 AACCCCAAAGCCGCCGGTCAGGTTCTCTGAAGATGCTCCGACGATGGTGCCCC-ATTGAAGAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGA-CGAAGAAAA
* ** * *
12648346 ATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGTAACCCTCGGTCTGGTCCGATCTT
65 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* * *
12648411 AGACTGGGAATGAACTCCATTTGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACG
130 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * *
12648476 AAACGA-CTATGGGGGCGCTCAGCCGGCCAGAGGGGTGGGTTGCACAAGCCGGGGATCGACCGGG
195 AAACGAGC-GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGG
* * * * ** * ** * * *
12648540 TCCTCCTTTGCGTCCTGCTAATCTTGCTGTTGCAACCCTTGATCCGGTCCGATCTTAGACTAGGA
259 TCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * *
12648605 ATGAACTTCATATGCCTAAGCCAACCGACGAAACGATCGGGTGGACGGGCGGGCGGGCACTACGC
324 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GTGGACGAGCGGGCGGGCACTACGC
12648670 C-AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
385 CGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
12648734 TTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
449 TTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
12648799 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAATTTTCACGATCTTCGAAACTTTTTAC
514 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAC
* * * * *
12648864 GATTCAGAATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCATAGACGTGATCCT
579 GGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCT
* * * *
12648929 TGTAATTTTTTTGGCATGCGCAAAACAGTTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGAT
644 TGT-ATTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
12648994 CATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTCGCAGCAAACCTGTAAAATCT
708 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
12649059 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
773 CAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
** * ** *
12649124 CCAAGTTTCAGCATCCATCGCACATCATGTGCGA-ACACCCCCCGG-TTCCCCGATCACC-G
837 CCAAGTACCAGCACCCATCGCACATCATGTGC-ACAC-CCCCCCGGCCCCCCCGATCGCCGG
** * ** * *
12649183 AACCCCAATGCTACCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCTCCGGCGAAGAAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAA
* *
12649248 TGCGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G---TT-
66 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* *
12649300 --C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGA
131 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
** * * * * * *
12649352 AACGAGTATGGGGGCGCTCAGCCGGCCAGAGGGGCGGGTTGCGCAAGTCAGGGATCGACCGAGTC
196 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* ** ** * *
12649417 CCCCTTTGCGTGCTACTAATCCTGCTGTTGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAAT
261 CCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * * * *
12649482 GAACTTCATACGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCG
326 GAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GTGGACGAGCGGGCGGGCACTACGCCG
* * *
12649547 GCCAGAGAGATGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-TC
387 ACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
12649611 ATATTTTTACGTGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
452 ATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
12649676 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATCTTCGAAACTTTTTACGAT
517 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGT
* * *
12649741 TCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCATAGACATGATCCTTGT
582 TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGT
* * * *
12649806 ATTTTTTTTGGCATGCATAAAACAGTTCAACTAAAAACTCGAAGTGTACAAAATTTTGTGACCAT
647 A-TTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
12649871 TTG-AAAAAGTGTCCCAATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAA
711 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
12649935 ACGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
776 ATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
12650000 AGTACTAGCACCCATCGCACATCAAGTGCACACACCCCCCGGCCCCCCCGATCACCGG
840 AGTACCAGCACCCATCGCACATCATGTGCACAC-CCCCCCGGCCCCCCCGATCGCCGG
* * * * * * * **
12650058 AACCCCAATGCTGCTGGTCAGGTTCTCTGATGATGCTCTGGTGATGGAGCCCCGGTGAAGAAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAA
* * ** * ** * *
12650123 TGTGGAACCAGCACATGGTCGAGCCCAGCATGTGCTCCCGTGACCCTCGGTCCAGCCCGATCTTA
66 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
12650188 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTACA
131 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-AC-
* * * ** * * *
12650253 AAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCATAAGCCGAGGATTGGTCGGG
194 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGG
* * * * * * * *
12650318 TCCCCCTTTGCATTCTGCCGATCCTGTTGCCACAACCCTCGGTCCGGACCGATCTTAGACTGGCA
259 TCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * *
12650383 ATGAACTCCGTGTGCCTAAAGCCAACCGACGAAATGAGTGGACGAGCGGGCAGGCACTACGCCGA
324 ATGAACTCCGTATGCCT-AAGCCAACCGACGAAACGAGTGGACGAGCGGGCGGGCACTACGCCGA
* *
12650448 CCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCA
388 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
12650513 TACTTCTGCGTGCCAATGCCATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCA
453 TATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
12650578 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGACTTTCGAAACTTTTTACGGTT
518 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTT
* * * * *
12650643 TGGGACTTTGTAAAATTTTTTCAGAATGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
583 CGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTA
* *
12650708 TTTTTATTGGCATGCACAAAA-ATATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTTACCAT
648 TTTTT-TTGGCATGCACAAAACA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
12650772 TTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
711 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
12650837 ATGCTCTTTAAGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
776 ATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * **
12650902 GTACCAGCCCCCATCGTACATCTTACGTGCACACCCCCCCGGCCCCCCCGATCTTCGG
841 GTACCAGCACCCATCGCACATC--ATGTGCACACCCCCCCGGCCCCCCCGATCGCCGG
* ** *
12650960 AACCCCAATGTCGCCGG-CTAGGTTCTCCAATGATGCTCCGGTGATGGTGCCCCGACGAAGAAAA
1 AACCCCAATGCCGCCGGTC-AGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAA
* * * *
12651024 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCAGTCCGGTCCGATCTT
65 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* * * *
12651089 AGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCATG
130 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * * * *
12651154 AAATGAGCGTGCGGGCGCTCAGTCGACCAGAGTGGTGGAATGCGTAAGTCTGGGG-TCGGTCGGG
195 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGGATCGATCGGG
* * * ** *
12651218 TCCCCCTCTGCGTGCTATCGATCTTGCTGCTGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGA
259 TCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * *
12651283 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTG
324 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTG
12651322 TGCGGGTGCT
Statistics
Matches: 5060, Mismatches: 578, Indels: 201
0.87 0.10 0.03
Matches are distributed among these distances:
872 2 0.00
873 156 0.03
874 260 0.05
875 368 0.07
876 3 0.00
877 4 0.00
879 1 0.00
880 2 0.00
881 1 0.00
883 1 0.00
884 1 0.00
886 1 0.00
887 2 0.00
889 2 0.00
890 2 0.00
891 47 0.01
892 140 0.03
893 202 0.04
894 74 0.01
895 8 0.00
896 79 0.02
897 261 0.05
898 244 0.05
899 329 0.07
900 377 0.07
901 839 0.17
902 487 0.10
903 307 0.06
904 620 0.12
905 236 0.05
906 3 0.00
907 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
CCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGACGAGCGGGCGGGCACTACGCCGACCA
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGG
GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTT
TTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCATCGCACATCATGTGCACACCCCCCCGGCCCCCCCGATCGCCGG
Found at i:12651115 original size:26 final size:26
Alignment explanation
Indices: 12651086--12651141 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
12651076 CCGGTCCGAT
* *
12651086 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12651112 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12651138 CTTA
1 CTTA
12651142 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12652671 original size:26 final size:26
Alignment explanation
Indices: 12652642--12652694 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12652632 CTGGTCCGAT
**
12652642 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
12652668 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
12652694 C
1 C
12652695 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:12653581 original size:26 final size:26
Alignment explanation
Indices: 12653545--12653597 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12653535 CTGATCCTAT
*
12653545 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
12653571 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
12653597 C
1 C
12653598 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:12653976 original size:902 final size:890
Alignment explanation
Indices: 12652030--12654597 Score: 3598
Period size: 891 Copynumber: 2.9 Consensus size: 890
12652020 CGGAACCCCA
* * **
12652030 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGC
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCT-AATGC
* * *
12652095 CAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTGAAGCCTTCACGAGAAGTTTCAT
65 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * *
12652160 GGCAAGACGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTGAC
130 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAA
* * *
12652225 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTATTTTTCTTGGCGT
195 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCAT
*
12652290 GCAAAAAAAAATTCAGC-AGAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
260 GCACAAAAAAATTCAGCTA-AAAACTC-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
12652354 CCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGG
323 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAG
* *
12652419 GGGTGTGAGCTCTT-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACC
388 GGGTGTGAG-TTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
12652483 CATTGCACA-CGATGTGCGCACACCCCCCGGCCACC-CGAAT-GCCGAAATCCCAATGCCGCCGG
452 CATCGCA-ATC-ATGTGCGCACACCCCCCGGCCCCCTCG-ATCGCCGAAACCCCAATGCCGCCGG
* * * *
12652545 TTAGG-T-T-CT-CTTGCGAT-GTGCCCAGGCAATGAAAAATGCGGCACCAGCACATGCTCGAGC
514 TCAGGTTCTCCTGCTTGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGC-CGAGC
* * * *
12652605 CCAGCATGTGCTGGCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
578 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTTCGTATGCT
** * * * * *
12652670 TAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGTGTGCGGGTGCTCAGTCG
643 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCG
* * ** * * * *
12652735 GCCAGAAGGGCGGGATGCGCAAGCCAGGGATCGACCGAGTCCCACTCTGCATGCTATCGATCCGG
708 GCCAGAGGGGCGGGATGCGCAAGCGA-GGATCGGTCGGGTCCC-CTCTGCGTGCTGTCGATCCTG
** *
12652800 CTGCTGCAACCCTCAGTTTGATCCAATCCTAGTCTGGGAATGAACTCCTTATGCCTAAGCCAACC
771 CTGCTGCAACCCTCAGTCCGATCCAATCCTAGTCTGGGAATGAACTCCATATGCCTAAGCCAACC
** * * ** *
12652865 GAGGAAATGAGTGGGCGAGCAGGCGGGCAGGCACTACGCCGGCCAGAGAGATGGG
836 GAACAAACGAGTGAGCGAGCAGGCGGGCAGGCACTACGCCAACCAGAGAGACGGG
* *
12652920 ATGCGCAAGCGGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTGAATGC
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCT-AATGC
12652985 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
65 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
12653050 GGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAT
130 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAA
* *
12653115 AA-TTTTTTCGACAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
195 AATTTTTTTGGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCA
* *
12653179 TGCACAAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTA
259 TGCACAAAAAAA-TTCAGCTAAAAACTC-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
12653244 TCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAA
322 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAA
* *
12653309 GGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGTACC
387 GGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
12653374 CATCGCAATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCC-AGAACCCCAATGCCGCCGGTC
452 CATCGCAATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGA-AACCCCAATGCCGCCGGTC
*
12653438 AGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCC
516 AGGTTCT-C--C--TGCTT-G-CGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCC
** * *
12653503 GGAGCCCAGCATGTGCCACCGTAACCCTCGGTCTGATCCTATCTTAGACTGGGAATGAACTTCGT
574 -GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTTCGT
* * *
12653568 ATGCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCATGGAATGAGCGTGCGGGCGCTC
638 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTC
* *
12653633 AGCCGGCCAGAGGGGCGAGATGTGCAAGCTGAGGATCGGTCGGGTCCACCTCTGCGTGCTGTCGA
703 AGCCGGCCAGAGGGGCGGGATGCGCAAGC-GAGGATCGGTCGGGTCC-CCTCTGCGTGCTGTCGA
* * ** * ** * *
12653698 TCTTGCT-ATCGCAACCCTTGGTCCGGTCTGATCTTAGAT-TGGGAATGTACTCCATATGCCTAA
766 TCCTGCTGCT-GCAACCCTCAGTCCGATCCAATCCTAG-TCTGGGAATGAACTCCATATGCCTAA
* * *
12653761 GCCAACC-AACAAACGAGTGAGCGGGCAGGCGGGCGGGCACTACGTCAACCAGAGAGACGGG
829 GCCAACCGAACAAACGAGTGAGCGAGCAGGCGGGCAGGCACTACGCCAACCAGAGAGACGGG
* *
12653822 ATGCGCAAGCCGTGGATCGATAGGGTGGCAAGTGGGTTTAGGCACATCTTCATATTTATACATGC
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTA-ATGC
*
12653887 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTAT
65 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* **
12653952 GGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAA
130 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAA
* * *
12654017 AATTTTTTTGGAAGGAGATTTGGCCTCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
195 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCAT
*
12654082 GCACAAAAAAATTCAGCTAAAAACTCAGAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTC
260 GCACAAAAAAATTCAGCTAAAAACTCA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
12654147 CCCA-TTCTAGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTT-AAG
324 CCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAG
* * *
12654210 CGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACC
388 -GGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
12654275 CATCGCAATCATGTGCACACACCCCCCCGGCCCCCTCGATCGTCGAAACCCGAATGCCGTCGGTC
452 CATCGCAATCATGTGCGCACA-CCCCCCGGCCCCCTCGATCGCCGAAACCCCAATGCCGCCGGTC
12654340 AGGTTCTCC-G---GCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
516 AGGTTCTCCTGCTTGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCC-GAGCCC
* *
12654401 AGCATGTGCTGCCGCAACCCTTGGTCTGGT-CTGATCTTAGATTGGGAATGAACTTCGTATGCTT
580 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCT-ATCTTAGACTGGGAATGAACTTCGTATGCTT
*
12654465 AGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAATGAGCGTTG-GGGCGCTCAGCCG
644 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCG-TGCGGGCGCTCAGCCG
* * * *
12654529 GACAGAGGGGCGGGATGCGCAAGCCGAGGATCAGTCGGGTCCCCCTCTCCGTGCTGCCGATCCTG
708 GCCAGAGGGGCGGGATGCGCAAG-CGAGGATCGGTCGGGT-CCCCTCTGCGTGCTGTCGATCCTG
12654594 CTGC
771 CTGC
12654598 CACAAAACTC
Statistics
Matches: 1502, Mismatches: 139, Indels: 72
0.88 0.08 0.04
Matches are distributed among these distances:
889 8 0.01
890 273 0.18
891 413 0.27
892 8 0.01
893 1 0.00
896 1 0.00
897 1 0.00
899 2 0.00
900 10 0.01
901 184 0.12
902 340 0.23
903 258 0.17
904 3 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (890 bp):
ATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTAATGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAA
ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG
TGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCAATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTT
CTCCTGCTTGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGCGAGGATCGGTCGGGTCCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAAC
CCTCAGTCCGATCCAATCCTAGTCTGGGAATGAACTCCATATGCCTAAGCCAACCGAACAAACGA
GTGAGCGAGCAGGCGGGCAGGCACTACGCCAACCAGAGAGACGGG
Found at i:12654472 original size:26 final size:26
Alignment explanation
Indices: 12654436--12654488 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12654426 CTGGTCTGAT
* *
12654436 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12654462 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12654488 C
1 C
12654489 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12654659 original size:26 final size:26
Alignment explanation
Indices: 12654621--12654673 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12654611 CAGATCTGAT
12654621 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12654647 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12654673 C
1 C
12654674 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12654826 original size:185 final size:185
Alignment explanation
Indices: 12654430--12654787 Score: 531
Period size: 185 Copynumber: 1.9 Consensus size: 185
12654420 CTTGGTCTGG
* * *
12654430 TCTGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
12654495 CAACCCATGAAATGAGCGTTGGGGCGCTCAGCCGGACAGAGGGGCGGGATGCGCAAGCCGAGGAT
66 CAACCCACGAAACGAGCGTTGGGGCGCTCAACCGGACAAAAGGGCGGGATGCGCAAGCCGAGGAT
* * *
12654560 CAGTCGGGTCCCCCTCTCCGTGCTGCCGATCCTGCTGCCACAAAACTCGATCAGA
131 CAGCCGGGTCCCCCTCTCCGTGCTACCGATCCTGCTACCACAAAACTCGATCAGA
*
12654615 TCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
12654680 CAACCCACGAAACGAGCG-TGCGGGTGCTCAACCGGCCAAAAGGGCGGGATGCGCAAGCCGAGGA
66 CAACCCACGAAACGAGCGTTG-GGGCGCTCAACCGGACAAAAGGGCGGGATGCGCAAGCCGAGGA
* * *
12654744 TC-GACCGGGTCCCTCTCTGCGTGCTATCGATCCTGCTACCACAA
130 TCAG-CCGGGTCCCCCTCTCCGTGCTACCGATCCTGCTACCACAA
12654788 CCCTCAGTCC
Statistics
Matches: 154, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
184 3 0.02
185 151 0.98
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (185 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTTGGGGCGCTCAACCGGACAAAAGGGCGGGATGCGCAAGCCGAGGAT
CAGCCGGGTCCCCCTCTCCGTGCTACCGATCCTGCTACCACAAAACTCGATCAGA
Found at i:12655555 original size:26 final size:26
Alignment explanation
Indices: 12655519--12655571 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12655509 CCTGTCCTAT
* *
12655519 CTTAGATTGGGAATAAACTTTGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
*
12655545 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
12655571 C
1 C
12655572 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:12656425 original size:902 final size:898
Alignment explanation
Indices: 12654615--12657881 Score: 4543
Period size: 906 Copynumber: 3.6 Consensus size: 898
12654605 CTCGATCAGA
* *
12654615 TCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * *
12654680 CAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAAAAGGGCGGGATGCGCAAGCCGAGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * ** *
12654745 CGACCGGGTCCCTCTCTGCGTGCTATCGATCCTGCTACCACAACCCTCAGTCCGGTTCGATCTTA
131 CGACCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACTGCAACCCTCAGTCCGGTCCGATCTTA
** * * * * *
12654810 GACTGGGAGCGAACTCCATATGCCTAAGCGAACCGACGAAACGAGCG-GCCA-GGCGGACGGGCA
196 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGAGCGAGGGCGGGCGGGCA
* * *
12654873 CTACGTCAGCCAGAGAGACTGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
261 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
** * *
12654938 ACATCAGCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
326 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTC
12655003 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATCTTT-GAAACT
391 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT-TTTCGAAACT
* * **
12655067 TTTTACGATTCAGAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCATAGACGT
455 TTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
12655132 GATCCTTGTATTTTTTTTGGCATGCACAAAATAGTTCAGCTAAAAACTCGAAGTGTACAAGATTT
520 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * *
12655197 TGTGATCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTCGCAGGAAACCTGTA
585 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
12655262 AAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
650 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
12655327 TAAGGGCCAAGTACCAGCACCCAT-GCACATCAAGTGCACACACCCCCCGGCCCCCCCGATCGTC
715 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGTC
* *
12655391 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAA
780 GGAA-CCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * * *
12655456 AATGCGGCACTAACACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTCGGTCCTG
844 AATGCGGCGCCAGCACATGCCCGAGCCCAGCATGTGCTGC-GCAACCCTCGGT-CGG
* * ** * *
12655513 TCCT-ATCTTAGATTGGGAATAAACTTTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAG
1 T-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* * * * **
12655577 TCAACCCATGAAGCGAGCATGCGGGTGCTCAACCGGCCAGAGGGGCACGATGCGCAAGCCGGGGA
65 TCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * *
12655642 TCGATCGGGTCCCACTCTGCGTGCTGCCAATCCTGCTACTGCAACCTTCAGTTCGGTCCAATCTT
130 TCGACCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACTGCAACCCTCAGTCCGGTCCGATCTT
* *
12655707 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGTGAGCAGATGGGTGGGCGG
195 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGAGC-GA-GGGCGGGCGG
* * *
12655772 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGGGTAGTAGGTGGGTTTA
258 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
12655837 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
323 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
12655902 CTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTCAAAA
388 CTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
** * *
12655967 CTTTTTACGGTTTGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
453 CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * *
12656032 GTGATCCTTCTATTTTTTTTGGTATGCACAAAATAATTCAGTTAAAAACTCGAAGTGTACAAGAT
518 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
12656097 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
583 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
12656162 TAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAC
648 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
12656227 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCTCTGATCG
713 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCG
* *
12656292 TCGGAACACCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAACAATGGTGCCCCGACGAAGA
778 TCGGAAC-CCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
12656357 AAAATGCGGCGCCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTC-GTCGG
842 AAAATGCGGCGCCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCC-TCGGTCGG
* *
12656415 TCTGATCTTAGACTGGGACTGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * ** * *
12656480 GAACCCATGAAACAAGCGTGCCTGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * ** * * *
12656545 CGAATGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCTGCAACCCTC-GATTCGGTTCGATCTT
131 CGACCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACTGCAACCCTCAG-TCCGGTCCGATCTT
* * * * *
12656609 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGGGCAG
195 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA--CAA-AA-CGAGCGAGC--GAGGGCGG
* * * *
12656674 GCGGGCACTACGTCGGCCAGAGATACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGG
254 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
12656739 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
319 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * ** *
12656804 GTCCCTCAAGCCTTCAAGTGAAGTTTCATGGCATGTTGACTCGTTTTCTATTTTTCACGATTTTT
384 GTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * *
12656869 GAAACTTTTTGCGGTT-TGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGG
449 GAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
12656933 TAGACATGATCCCTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAATCTTGAAGTGTAC
513 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
12656998 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
578 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
12657063 ACCTGCAAAATCACAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
643 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
12657128 GCCAATATAAGGGCAAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCCGGCCCATCC
708 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCC
** * * * * *
12657193 GATCACCGGAACCCTAATGCTGTCGGTCAGGTTCTCCAGCGTTGCTCCGGCGATGGTGCTCCGAC
773 GATCGTCGGAACCC-AATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
* ** *
12657258 GAAGAAAAATGCAGCGCCAGCACATGTTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGA
837 GAAGAAAAATGCGGCGCCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCCTCGGTCGG
* * * *
12657321 TCCGGTCTTAGACTGTGACTGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * *
12657386 GAACCCACGAAACGAGCGTG-GGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * ** * * *
12657450 CGGCCAGGTCCCCCTCTACGTGCTACCAATCCTACTGTTGTAACCCTCGGTCCGGTCTGATCTTA
131 CGACCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACTGCAACCCTCAGTCCGGTCCGATCTTA
* * * * *
12657515 GACTAGGAATGAACTCCGTATGCCTAAGGCAACAGAC-GAA--A-CGAGC--GGGTGGGCGGGCA
196 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGAGCGAGGGCGGGCGGGCA
* * ** * *
12657574 CTACACCGGCCAGAAAGACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGTGTGTTTTGGC
261 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
12657639 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGTTTGTAAATCCATACAATGGTCCTTT
326 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTC
* *
12657704 AAGCCTTCACGTGAAGTTTCGTGGCTAGACGACTCGTTTTCTATTTTTCACGA-TTTCTGAAACT
391 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC-GAAACT
** *
12657768 TTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGTAGG-GTTTCTGGCCCCAAACTTGGTAGACG
455 TTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTT-TGGCCCCAAACTTGGTAGACG
* *
12657832 TGATCCTTGTCTTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTC
519 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
12657882 CTAGTCAACC
Statistics
Matches: 2105, Mismatches: 240, Indels: 53
0.88 0.10 0.02
Matches are distributed among these distances:
892 6 0.00
893 273 0.13
894 1 0.00
897 4 0.00
898 208 0.10
899 4 0.00
900 1 0.00
901 8 0.00
902 653 0.31
903 138 0.07
904 5 0.00
905 129 0.06
906 674 0.32
907 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
CGACCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACTGCAACCCTCAGTCCGGTCCGATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGAGCGAGGGCGGGCGGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTC
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTT
TTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGTCG
GAACCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
TGCGGCGCCAGCACATGCCCGAGCCCAGCATGTGCTGCGCAACCCTCGGTCGG
Found at i:12657356 original size:26 final size:26
Alignment explanation
Indices: 12657327--12657379 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12657317 TCGATCCGGT
*
12657327 CTTAGACT-GTGACTGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
12657353 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12657379 C
1 C
12657380 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12660660 original size:849 final size:852
Alignment explanation
Indices: 12658097--12662269 Score: 4508
Period size: 902 Copynumber: 4.8 Consensus size: 852
12658087 CGCCAACTAC
* * * *
12658097 AGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTATATCTTCATATT
*
12658162 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTG
66 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* ** ** *
12658227 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCAGG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTGCGGTTCGGG
* * *
12658292 ATTTTTTTAAAATTCTTTCGGAAGGAGTTTCGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
196 A-TTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
12658357 TTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATGTTGTGACCATTTGA
260 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
*
12658422 AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
325 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * ** *
12658487 TGTTTAACGGGGTGTGATTTCTAAAGGTTTGATGAGGCATAGTGGG-CCAATATAAGGGCCAAGT
390 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGACCAATATAAGGGCCAAGT
*
12658551 ACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCTGCCCCCCCGATCGTCGGAACCCCAAT
454 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * * *
12658614 G---CC-GT-AGG---T-C-A-GGTTCTTCGACGATGGTGCCCC-AGTGAAGAAAAATGCGGCAC
519 GCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATACGGCAC
* * * * *
12658667 CAGCACATGCCCAAGCCCAGCATGTGCTGCCGCCACACTCGATTCGATTCGATCTTAGACTGGGA
583 CAGCACATGCCCGAGCCCAGCATGTGCAGCCGCAACCCTC-A---G-TCCGATC-----C---G-
* * * *
12658732 ATGAACTTCATATGCTTGACTAGGAATAAAGTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
634 AT---C--C-TA-----GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * *
12658797 ACGGGCGCTCAGCCGGCCATAGGGGCGGGATGC-CGAGCCGGGGATC-AGTCGAGTACCCTTCTA
688 GC-GGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGA-TCGGGTCCCCCTCTA
* * * * * * *
12658860 CGTGCTATCGATCCTGCTGTC-GCAACCCCCGATCCTG-TCTGATCTTAGACTAGGAATAAACTT
751 CGTGCTGT-GATCCTAC--TCAGCAACCCTCGATCCGGTTCTGATCTTAGACTGGGAATGAACTC
* * * *
12658923 TGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCAGCTAG
813 CGTATGCCTAAGCCACCCGATG-AA--A-----------------CGGG-ACTACG---GCCAG
* * * *
12658987 AGAGACAGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCATGTCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTATATCTTCATATT
* *
12659052 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGTCTTCACGTG
66 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * * * *
12659117 AAGTTTAAAGGCAAGGCAACTCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTGCGGTTCGGG
* * * * * *
12659182 ATTTTTTAAAATTTTTTTGAAAAGTGTTTTGGCCCCGAACTTGGAAGACGTGATCCTTGTATTAT
196 ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* *
12659247 TGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAA
261 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
* * ** *
12659312 AAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTACAAAATC-CAAAATTC
326 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGC
*
12659376 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTA
390 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTA
* * *
12659441 CCAGCACGCATCGCACATCATGTGCACACACACCCCCCCGGCCCCCCCGATCGACGGAACCCCAA
455 CCAGCACCCATCGCACATCATGTG--CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAA
* * * *
12659506 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCTG-CGATGGTGCCCCGATGAAGAAAAATGCGGCC
518 TGCCACCGGTCAGGTTCTCCGACGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAATACGGCA
* * * * * * *
12659570 CCAGCACATGCCCGAGCCCAGCATCTGCTGCCCCAACCCTCGGTCGGGTCCGATCTTAGACTGGG
582 CCAGCACATGCCCGAGCCCAGCATGTGCAGCCGCAACCCTCAGTCCGATCCGATCCTAGACTGGG
* * * * *
12659635 AATGAACTCCGTATGCCTAAGTGAACTCACAAAACGAGCGTGCGAGTGCTCAGCCGGCCAGATGG
647 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG-GCGCTCAGCCGGCCAGAGGG
* * *
12659700 GCAGGATGCGTAAGTCGAGGATCGATCGGGTCCCCCTCTATGTGCTGTCGATCCTACTATCA-CA
711 GCAGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGT-GATCCTAC--TCAGCA
* *
12659764 ACCCTCGATCCGG-TCTGATCTTAGACTGGGAATGAACTCCATATGCCTAATCCACCCGATGAAA
773 ACCCTCGATCCGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCACCCGATGAAA
*
12659828 CGAG-C-A-GG-CAG
838 CGGGACTACGGCCAG
* * *
12659839 AGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGCTGGGTTTAGGTATACCATCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTATATCTTCATATT
* *
12659903 TCTACATGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
66 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * ** *
12659968 AAGTTTCATGGCAAGACGACCCGTTTTCTATTTGTCATGATTTTTTAAACTTTTTGCGGTTCGGG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTGCGGTTCGGG
* * * *
12660033 ATTTTTGAAAATTTTTTCG-AAGGAATTCTGGCCCCAACCTTGGTAGACGTGATCCTTGTATTTT
196 ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* **
12660097 TGTTGGCATGCACAAAATAATTTGGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
261 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
12660162 AAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTAGCAGCAGACCTGTAAAATCTCAAATGCT
326 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
12660227 CTTTAAGGAGGTGTGAGTTCTCGTGGTTTGATG-GGGATAGGGGACCAATATAAGGGCCAAGTAG
391 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTAC
* *
12660291 CAGCACCCATTGCACATCATGTGCGCACACCCTTCCCCAGCCCCCCCGATCGTCGGAACCCCAAT
456 CAGCACCCATCGCACATCATGTGCGCACACCC--CCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * ** *
12660356 GTCATCGGTCAGGTTCTTCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACG
519 GCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACC
* * * *
12660421 AACACATGCCCAAGCCCAACATGTGCAGCCGCAACCCTCAGTCCGATCTGATCCTAGACTGGGAA
584 AGCACATGCCCGAGCCCAGCATGTGCAGCCGCAACCCTCAGTCCGATCCGATCCTAGACTGGGAA
* * * *
12660486 TGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCAGGCGCACAGCTGGCTAGAGGGGC
649 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGC
* * * * *
12660551 AAGATGCACAAGCCGAGGATCGACCGGG-CCCCTCTCTGCGTGCTGCTGATCCTACTGCAGTAAC
713 AGGATGCGCAAGCCGAGGATCGATCGGGTCCCC-CTCTACGTGCTG-TGATCCTACT-CAGCAAC
* *
12660615 CCTC-AGTCCGGTTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGGAAC
775 CCTCGA-TCCGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCACCCGAT-GAA-
**
12660678 GAGCGGGCGGGCGGGCACTACCTCGGTTAG
837 -A---------CGGG-ACTA---CGGCCAG
* *
12660708 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTATATCTTCATATT
* *
12660773 TCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCGTTCACGTG
66 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * *
12660838 AAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGGG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTGCGGTTCGGG
* * * * *
12660903 ATTTTTAAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTAGTAGACGCGATCTTTGTATTT
196 ATTTTT-TAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
12660967 TTTTTCGCCTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
260 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
12661032 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
325 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * ** * *
12661097 TGTTTAAGGGGGTGTGAGTTCTCGAGGTTTTATGGGGGATAGTTG-CCAATATAATGGCCATGTA
390 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTA
* * *
12661161 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCTCAATCGTCGGAACCCCAATG
455 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG
* * *
12661226 CCACCGATCAGGTTCTCCGACGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATACGACACG
520 CCACCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATACGGCACC
* *
12661290 AGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTC-GTTCCGGTCTGATCTTAGACTGAGA
584 AGCACATGCCCGAGCCCAGCATGTGCAGCCGCAACCCTCAG-T-C---C-GATC-----C-----
12661354 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
633 --G-A-T-C-----C-TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * *
12661419 TGCGGACGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCGCCCTCTA
687 TGCGG-CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTA
* * * * *
12661484 CATGCTGTTGATCCTGCTCCGCAACCCTCGAT-CTGTTCTGATCTTAGACTGGGAATGAACTTCG
751 CGTGCTG-TGATCCTACTCAGCAACCCTCGATCCGGTTCTGATCTTAGACTGGGAATGAACTCCG
**
12661548 TATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGTTGGCGGGCACTACGTCGGCCAG
815 TATGCCTAAGCC-ACC--CG--ATGA---------------AACGGG-ACTA---CGGCCAG
* * *
12661610 AGAGACGGGATGCGCAAGCCATGGTTCGATAGGGTGGTAGGTGGGTTTAGGCT-CATCTTCATAT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-TATATCTTCATAT
* * * *
12661674 TTTTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTAAGGT
65 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* ** * * *
12661739 GAGGTTTCATGGCAAGACGACTTATTTTCTATTTTTCACAATTTTAAAAAGTTTTTACGGTTCGG
130 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTGCGGTTCGG
* *
12661804 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTACTT
195 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * * *
12661869 TTATTGGCATGCACAAAAAAATACAGCAAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTG-
260 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
* * *
12661933 AAAAAGCGTCCCCATTTCAGACAATTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGC
325 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * *
12661998 TCTTTAAGGGGGTGTGAGTTGTCTAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
390 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTA
* * ** * **
12662063 CTAGCACCCATCGCACATCATCTGCGCACACCCCCTTGGCCCCCTCGATCG-CTGGAACCTTAAT
455 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAAT
* * * * * * * ***
12662127 GTCGCCAGTCAAGTTCTCCGGCGACGCTCCGGC-ATGGTGCCCCGACGAAGAAAAATGTAGCACC
519 GCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACC
* *
12662191 AGCACATGCCCGAGCCCAGCATGTGCTA-CCGCAACCGTCAGTCCGATCCGATCTTAGACTGGGA
584 AGCACATGCCCGAGCCCAGCATGTGC-AGCCGCAACCCTCAGTCCGATCCGATCCTAGACTGGGA
* *
12662255 ATCAACTCTGTATGC
648 ATGAACTCCGTATGC
12662270 TTAAAAACTC
Statistics
Matches: 2822, Mismatches: 344, Indels: 249
0.83 0.10 0.07
Matches are distributed among these distances:
847 9 0.00
848 8 0.00
849 334 0.12
850 189 0.07
851 161 0.06
852 32 0.01
853 1 0.00
856 1 0.00
857 1 0.00
858 1 0.00
860 3 0.00
861 3 0.00
863 1 0.00
864 1 0.00
868 4 0.00
869 152 0.05
870 155 0.05
871 246 0.09
872 8 0.00
873 1 0.00
874 4 0.00
875 23 0.01
877 1 0.00
878 1 0.00
879 69 0.02
880 91 0.03
881 2 0.00
882 1 0.00
883 1 0.00
884 3 0.00
886 1 0.00
887 2 0.00
888 5 0.00
889 255 0.09
890 180 0.06
891 7 0.00
893 36 0.01
894 49 0.02
895 114 0.04
896 9 0.00
897 5 0.00
898 5 0.00
899 6 0.00
900 2 0.00
901 175 0.06
902 391 0.14
903 2 0.00
904 69 0.02
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (852 bp):
AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTATATCTTCATATT
TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTGCGGTTCGGG
ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
CACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAG
CACATGCCCGAGCCCAGCATGTGCAGCCGCAACCCTCAGTCCGATCCGATCCTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCAGG
ATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTGATCCTACTCAGCAACCCTCGA
TCCGGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCACCCGATGAAACGGGACTA
CGGCCAG
Found at i:12661371 original size:26 final size:26
Alignment explanation
Indices: 12661342--12661394 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12661332 CCGGTCTGAT
12661342 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
12661368 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12661394 C
1 C
12661395 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:12663551 original size:26 final size:26
Alignment explanation
Indices: 12663512--12663564 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12663502 TCGGTCCGAT
*
12663512 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12663538 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12663564 C
1 C
12663565 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12664207 original size:901 final size:891
Alignment explanation
Indices: 12662271--12665083 Score: 3135
Period size: 892 Copynumber: 3.2 Consensus size: 891
12662261 TCTGTATGCT
* *
12662271 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGATAAAAGTGTCCCCATTTCAGACACTTT
1 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
12662336 AATGGCTACTGGCATCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGG
66 AATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
* * *
12662401 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCAC
131 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * ***
12662466 AAACCCCCCCGGCCACCCCAATCGTCGAAACCACAAAGCTGTCGGTCAGGTTCTCCGACGATGCT
196 ACACCCCCCCGGCCCCCCCAATCGTCGGAACCCCAAAGCCACCGGTCAGGTTCTCCGACGATGCT
* ** * * * * *
12662531 TCGACGATGGTGCCTTGACGAAGAAAAATGCAACACCAGCACATGCCCAAGCCTAGCATGTGCTA
261 CCGACGATGGTGCCCCGACGAAGAAAAATACAACACCAACACATGACCAAGCCCAGCATGTGATA
*
12662596 CCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
326 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * *
12662661 AACTCCGTCTGCCTAAGTCAACCCACGAAATGAGTGCGCAGGTGCTCAGTCGGCCAGTGGGGCGG
391 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGTACG-AGGTGCTCAGCCGGCCAGAGGGGCAG
***
12662726 GATGCGCAAGCCGGGGATCGGTTCGGTCCCCCTCTGTGTGCTACCGATCCCGCTGCTGCAACCCT
455 GATGCGCAAGCCGGGGATCGAACCGGTCCCCCTCTGTGTGCTACCGATCCCGCTGCTGCAACCCT
* *
12662791 CGATCCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCG
520 CGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACAAGCG
* *
12662856 GACGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
585 GACGGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
12662921 GTTTAGGCACATCTTCATATCTCTACTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATG
650 GTTTAGGCACATCTTCATATCTCTACTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
12662986 GACCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGATGACTCGCTTTCTATTTTTTCATGATTTT
715 GACCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGACGACTCGCTTTCTATTTTTTCACGATTTT
* ** *
12663051 TGAAACTTTTTGTGGTTCAGCATTTTTAAAAAAATTTTCGACTGGAGTTTGGGCCCCAAACTTGG
780 GGAAACTTTTTACGGTTCAGCATTTTTAAAAAAATTTTCGAATGGAGTTTGGGCCCCAAACTTGG
12663116 TAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
845 TAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
12663163 CAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
1 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
12663228 AATGGCTA-TAGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTTGAG
66 AATGGCTACTA-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
* * **
12663292 GTTTGATGAGGGATAGGGGGCCAAAATAATGGCCCTGTACCAGCACCCATCGCACATCATGTGCG
130 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
12663357 CACACCCCTCCGGCCCCCCCATTCGTCGGAACCCCAATGCCACCGGTTAGGTTCTCCGGCGATGC
195 CACACCCCCCCGGCCCCCCCAATCGTCGGAACCCCAAAGCCACCGGTCAGGTTCTCCGACGATGC
* **
12663422 TCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAACACAT-ACCAGAGCCCAGCATGTGA
260 TCCGACGATGGTGCCCCGACGAAGAAAAATACAACACCAACACATGACCA-AGCCCAGCATGTGA
* * * * *
12663486 TGCCGCAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGTGAA
324 TACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
12663551 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACG-GGTGCTCAGCCGGCCAGAGGGG
389 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG--TACGAGGTGCTCAGCCGGCCAGAGGGG
* * *
12663615 CAGGATGCGCAAGCC-GGGATC-AACCGGGTCCGCCTCTGTG-GCTGCCGATCCTGCTG-TCGCA
452 CAGGATGCGCAAGCCGGGGATCGAACC-GGTCCCCCTCTGTGTGCTACCGATCCCGCTGCT-GCA
** * * *
12663676 ACCC-CGAT-TTGATCTGATGTTAGACTGGGAATGAACTCCATATGCCTGAGCCAACTGACGAAA
515 ACCCTCGATCCAG-TCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACG-AA
* **
12663739 CGAGCGAAAGAGCGGGCGGGCGGGCACTACGCC-AGTTAGAGAGACGAGATGCGCAAGCCGTGGA
578 --A-C---A-A----GCGGACGGGCACTACGCCGA-CCAGAGAGACGAGATGCGCAAGCCGTGGA
* *
12663803 TCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTA-TGTTCCAATGCCATTTTTAT
631 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTACTG--CCAATGCCATTTTTAT
* * *
12663867 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
694 GGCTTGTAAATTCATACAATGGACCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGACGACTCGC
* *** *
12663932 TTTCTA-TTTTTCACGATTTTGGAAACTTTTTACGGTTTGAG-ATTTTTTAAAATTTTTTTGGAA
759 TTTCTATTTTTTCACGATTTTGGAAACTTTTTACGG-TTCAGCA-TTTTTAAAAAAATTTTCGAA
* * * *
12663995 T-GAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTACTTTTT-TTGGCATGCACAACAAAA
822 TGGAGTTTGGGCCCCAAACTTGGTAGACGTGATCCATGTA-TTTTTGTTGGCATGCACAAAAAAA
12664058 TTCAGC
886 TTCAGC
* * *
12664064 TAAAAACTTGAAGTGTACAAGATTTTATGACTATTTGAAAAAAAGTGTCCCCATTTCAGACACTT
1 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTT
*
12664129 TAATGGCTACTAGCAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTG-GAGTTCTCT-A
65 TAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-TGA
12664192 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
129 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* ** ** ** *
12664257 GCACACACCCCCCTCGG-CCCCCC-GTCGTCGGAACCCCAGCGCTGCCGGTCAGGTTCTCTAATG
194 G--CACACCCCCC-CGGCCCCCCCAATCGTCGGAACCCCAAAGCCACCGGTCAGGTTCTCCGACG
*
12664320 ATGCTCCGGCGATGGTG---C--C---------T------------C--G----AGCCCAGCATG
256 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACAACACCAACACATGACCAAGCCCAGCATG
* * * * * * *
12664353 TGCTATCGCAAACCTCGGTCCGGTTCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGG
321 TGATACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
12664418 GAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGTGTACG-GGTGCTCTGCCGGCTAGAG
386 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA--GTACGAGGTGCTCAGCCGGCCAGAG
* * * * * * ** * ** * *
12664482 GGG-TGAGATGCGTAAGTCGGGGATC-AGTCGGGTCTCCCTCTACGTGCTATCGATCCTACTACC
449 GGGCAG-GATGCGCAAGCCGGGGATCGA-ACCGGTCCCCCTCTGTGTGCTACCGATCCCGCTGCT
* * *
12664545 GTAACCCTCG-GCCTGATCTGATCTTAGACTGTCGGAATG--CT-C---TG--T---------G-
512 GCAACCCTCGATCCAG-TCTGATCTTAGACTG--GGAATGAACTCCATATGCCTAAGCCAACCGA
* * * * * ***
12664591 TG---C-A-C-TAC--G---T-TG--G-CCTGAGAGACGGGATGCGCAAATTGTGGATCGATAGG
574 CGAAACAAGCGGACGGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGG
* * *
12664641 TTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
639 GTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTAC-TGCCAATGCCATTTTTATGGCTTGTAA
* * * * *
12664706 ATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA-TT
703 ATTCATACAATGGACCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGACGACTCGCTTTCTATTT
** * ** * *** * *
12664770 TTTCATTATTTTTGAAACTTTTTGGGGTTCAGGATTTTTTAAAATTTTTTTGGAAT-GAGTTTTG
768 TTTCACGATTTTGGAAACTTTTTACGGTTCAGCA-TTTTTAAAAAAATTTTCGAATGGAGTTTGG
* * *
12664834 GCCCCAAACTTGGTAGACGTGATCCTTGTACTTTT-TTGGCATGCACAAAAAAATTTAGC
832 GCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
12664893 TAAAAACTCGAAGAGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTT
1 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * * *
12664958 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGTTATGAGTTCTCGAGG
66 AATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
* *
12665023 TTTGATGAGGGATAGGGGGCCAATATAACGACCAAGTACCAGCACCCATCGCACATCATGT
131 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
12665084 ATTTTTGTTG
Statistics
Matches: 1689, Mismatches: 183, Indels: 161
0.83 0.09 0.08
Matches are distributed among these distances:
828 74 0.04
829 132 0.08
830 232 0.14
832 2 0.00
833 1 0.00
834 1 0.00
837 1 0.00
839 1 0.00
840 1 0.00
845 1 0.00
850 1 0.00
857 1 0.00
858 1 0.00
867 1 0.00
869 3 0.00
870 135 0.08
871 17 0.01
872 21 0.01
873 21 0.01
875 6 0.00
876 1 0.00
888 2 0.00
889 48 0.03
890 24 0.01
891 23 0.01
892 408 0.24
893 1 0.00
894 3 0.00
896 1 0.00
897 2 0.00
899 1 0.00
900 3 0.00
901 270 0.16
902 229 0.14
903 17 0.01
904 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (891 bp):
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGGCCCCCCCAATCGTCGGAACCCCAAAGCCACCGGTCAGGTTCTCCGACGATGCT
CCGACGATGGTGCCCCGACGAAGAAAAATACAACACCAACACATGACCAAGCCCAGCATGTGATA
CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAATGAGTACGAGGTGCTCAGCCGGCCAGAGGGGCAGG
ATGCGCAAGCCGGGGATCGAACCGGTCCCCCTCTGTGTGCTACCGATCCCGCTGCTGCAACCCTC
GATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACAAGCGG
ACGGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATCTCTACTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
ACCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGACGACTCGCTTTCTATTTTTTCACGATTTTG
GAAACTTTTTACGGTTCAGCATTTTTAAAAAAATTTTCGAATGGAGTTTGGGCCCCAAACTTGGT
AGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
Found at i:12664433 original size:26 final size:26
Alignment explanation
Indices: 12664382--12664434 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12664372 CCGGTTCAAT
* *
12664382 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12664408 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12664434 C
1 C
12664435 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12665256 original size:223 final size:221
Alignment explanation
Indices: 12664860--12665306 Score: 759
Period size: 223 Copynumber: 2.0 Consensus size: 221
12664850 ACGTGATCCT
*
12664860 TGTACTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGAGTACAAGATTTTGTGACC
1 TGTACTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTTTGTGACC
*
12664925 ATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
66 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
12664990 AAATGCTCTTTCAGGGGTTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAACGAC
131 AAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAACGAC
12665055 CAAGTACCAGCACCCATCGCACATCA
196 CAAGTACCAGCACCCATCGCACATCA
* **
12665081 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAATTGTACAAGATTTTGTGAC
1 TGTACTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTTTGTGAC
12665146 CATTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
65 CA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
12665211 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGG
129 TCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAACG
* *
12665276 GCCAAGTACCAGCACCCATTGCACATCA
194 ACCAAGTACCAGCACCCATCGCACATCA
12665304 TGT
1 TGT
12665307 GCGCACACCC
Statistics
Matches: 211, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
221 8 0.04
222 54 0.26
223 149 0.71
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (221 bp):
TGTACTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAACGAC
CAAGTACCAGCACCCATCGCACATCA
Found at i:12665494 original size:26 final size:26
Alignment explanation
Indices: 12665465--12665517 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12665455 CTGGTCCGAT
12665465 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12665491 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12665517 C
1 C
12665518 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12666628 original size:159 final size:159
Alignment explanation
Indices: 12666339--12666633 Score: 394
Period size: 159 Copynumber: 1.9 Consensus size: 159
12666329 GCCCAGCATG
* * *
12666339 TGCTACCGTAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGACTAAGTCAA
1 TGCTACCGCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAA
* * * * * * *
12666404 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGA
66 CCAACGAAACGAGCGGGCGGGCACTCAGCCGACCAGAGAGACGAGATGCGCAAGCCGGGGATCGA
*
12666469 TCGGGTCCCCCTCTGTGTGCTGCTGATCC
131 TAGGGTCCCCCTCTGTGTGCTGCTGATCC
* * ** *
12666498 TGCTACCGCCACCCTTGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAA
* * * *
12666563 CCAACGAAACGAGCGGGCGGGCACT-ATGTCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCG
66 CCAACGAAACGAGCGGGCGGGCACTCA-GCCGACCAGAGAGACGAGATGCGCAAGCCGGGGATCG
12666627 ATAGGGT
130 ATAGGGT
12666634 GGTAGGTCAG
Statistics
Matches: 115, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
158 1 0.01
159 114 0.99
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.19
Consensus pattern (159 bp):
TGCTACCGCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAA
CCAACGAAACGAGCGGGCGGGCACTCAGCCGACCAGAGAGACGAGATGCGCAAGCCGGGGATCGA
TAGGGTCCCCCTCTGTGTGCTGCTGATCC
Found at i:12669075 original size:26 final size:26
Alignment explanation
Indices: 12669039--12669091 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12669029 CTGGTCTGAT
*
12669039 CTTACACTGGGAAAGAACTCCATATG
1 CTTAAACTGGGAAAGAACTCCATATG
* *
12669065 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAAAGAACTCCATATG
12669091 C
1 C
12669092 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAAAGAACTCCATATG
Found at i:12669976 original size:26 final size:26
Alignment explanation
Indices: 12669940--12669992 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12669930 CCGGTCCGAT
12669940 CTTACACTGGGAAAGAACTACGTATG
1 CTTACACTGGGAAAGAACTACGTATG
* * *
12669966 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAAAGAACTACGTATG
12669992 C
1 C
12669993 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAAAGAACTACGTATG
Found at i:12670868 original size:26 final size:26
Alignment explanation
Indices: 12670839--12670891 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12670829 CTGGTCCGAT
* *
12670839 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12670865 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12670891 C
1 C
12670892 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12671773 original size:26 final size:26
Alignment explanation
Indices: 12671744--12671796 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12671734 CCGGTCTGAT
12671744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12671770 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12671796 C
1 C
12671797 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12671967 original size:26 final size:26
Alignment explanation
Indices: 12671929--12671981 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12671919 TTGGTCTGAT
* *
12671929 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
12671955 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
12671981 C
1 C
12671982 CAAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:12672061 original size:185 final size:185
Alignment explanation
Indices: 12671736--12672140 Score: 555
Period size: 185 Copynumber: 2.2 Consensus size: 185
12671726 CCCTTGGTCC
* *
12671736 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATAAACTCCGTATGCCTAA
* * * * *
12671801 GTTAACCCACGAAACGAGCATGCGGGTGCTCAGCCTGCCAGAGGGGCGGGATGTGCAAGCCGGGG
66 GTCAACCCACGAAACGAGCATACGGGTGCTCAGACTGCCAGAGGGGCGGGATGCGCAAGCCGAGG
* * * * **
12671866 ATCAGTCGGGTCCTCCTCTGCGTG-CTGCCAATCCTACTGCCGCAACCTTCGGTTT
131 ATCAGTCGGGTCCCCCTCTACGTGTC-GCCAATCCTACTACCGCAACCTTCAGCCT
12671921 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATAAACTCCGTATGCC-AA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATAAACTCCGTATGCCTAA
* * *
12671985 GGTCAACCCATGAAACGAGCGTACGGGTGCTCA-ACTAGCCAGAGGGGCGGGATGCGCAAGTCGA
66 -GTCAACCCACGAAACGAGCATACGGGTGCTCAGACT-GCCAGAGGGGCGGGATGCGCAAGCCGA
* * * * *
12672049 GGATCGGTCGGGTCCCCCTCTACGTGTCGTCGATCCTGCTACTGCAACCTTCAGCCT
129 GGATCAGTCGGGTCCCCCTCTACGTGTCGCCAATCCTACTACCGCAACCTTCAGCCT
* *
12672106 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
12672141 CAAAGCCAAC
Statistics
Matches: 194, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
184 4 0.02
185 189 0.97
186 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (185 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATAAACTCCGTATGCCTAA
GTCAACCCACGAAACGAGCATACGGGTGCTCAGACTGCCAGAGGGGCGGGATGCGCAAGCCGAGG
ATCAGTCGGGTCCCCCTCTACGTGTCGCCAATCCTACTACCGCAACCTTCAGCCT
Found at i:12674604 original size:26 final size:26
Alignment explanation
Indices: 12674568--12674620 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12674558 CCAATCCGAT
*
12674568 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12674594 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12674620 C
1 C
12674621 CGAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.