Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 78 of 190
Found at i:12675485 original size:26 final size:26
Alignment explanation
Indices: 12675434--12675486 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12675424 CTGGTCCGAT
*
12675434 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
12675460 CTTAGCCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12675486 C
1 C
12675487 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12676368 original size:26 final size:26
Alignment explanation
Indices: 12676332--12676384 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12676322 CCAGTCTGAT
*
12676332 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12676358 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12676384 C
1 C
12676385 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12677641 original size:902 final size:901
Alignment explanation
Indices: 12674684--12682576 Score: 10111
Period size: 902 Copynumber: 8.9 Consensus size: 901
12674674 GGATGCGCAA
* * * * * *
12674684 GCCGATCCTACTGCCGCAACCGTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCC
1 GCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* *
12674749 TAAGCCAACCGACGAAACGAGCGTGCGGGC--G-GGTGGGCACTACGCCGGCCAGAGAGACGGGA
66 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *
12674811 TGCGCAATCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCATGCC
131 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* *
12674875 AATGCCATTTTTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATG
196 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
12674940 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATGTTTTAAA
261 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAA
**
12675005 ATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
326 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
12675070 CAGAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCC
391 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
12675135 CCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAG
456 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * * * *
12675200 GTGTGCGTTCTCAAGGTTTGATGAGGGATAGGGGGCAAACATAAGGGCCGAGTACTAGCACCCAT
521 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
12675265 CGCACATCATGTGCGCACACCCCCCCAGGCCCCT-GATCGACGGAACCCCAATGTCACCGGTCAG
586 CGCACATCATG-GTGCACA--CCCCC-GGCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAG
* * *
12675329 GTTCTCCGACGATGCTCC-AGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCC
647 GTTCTCTGATGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * * * **
12675393 AAGCCCAGCATGTGCTACTGTAACCCACGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTATA
711 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
*
12675458 TGCTTAGCCTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
776 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * *
12675523 GCT-GGCCAGAGGGGCAGGATGCACAAGCCGGGGATC-GGCCGGGTCCCCCTCTACGTGCT
841 GCTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCCGGGTCCCCCTCTACGTGCT
* * * * * * * * * *
12675582 GCTGGTCCTGTTACTACAATCCTCGATTCAGTCTGATCTTAGATTGCGAATGAACTCCGTACGCC
1 GCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
12675647 TAAGCCAACCGACAAAACGAGCGGGCGGGC--G-GGCGGGCACCATG-CGGCCAGAGAGACGGGA
66 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * *
12675708 TGTGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTT-GGCACATCTTCATTTTTCTACATGCC
131 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* *
12675772 AATGCCATTTTTATGGCTTGTAAATTCA-GCAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATG
196 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * ** *
12675836 GCAACACGACTCGTTTTTTATTTTTCATAATTTTTGAAA-TTTTTGTGGTTCGAGATTTTTTAAA
261 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAA
* * *
12675900 ATTTTGTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGCGATCCTTGTATTTTTCTTGGCATG
326 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
12675965 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACTATTTAAAAAAAAGTGTC
391 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTC
* *
12676030 CCCATTTCAGACACTTTAATTGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GG
455 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
12676094 GGTGTGAGTTCTCGAGGTTTGATGAGGCATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCA
520 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * **
12676159 TTGCACATCATGTGCGCACACCCTCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCAAT
585 TCGCACATCATG-GTGCACA-----CCCCCGGCCCCTCGATCGCCGGAACCCCAATGCCGCCGGT
* * * * * ** *
12676224 CAGGTTCTCCGACGATTCTCCGACGGTGGTGCTCCGGTGAAGAAAAATGCGGCACCAACACATGC
644 CAGGTTCTCTGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * *
12676289 CTGAGCCTAGCATGTGCTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCG
709 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* *
12676354 TATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCA-CAGAACGAGCGTGCGGGCGC
774 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA-AACGAGCGTGCGGGCGC
* * * * *
12676418 TCAGC-CGGCCAGAGGGGTGGGTTGCACAAGCCGGGGATC-GACCGGGTCCCCCTCTGCGTGCT
838 TCAGCTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCCGGGTCCCCCTCTACGTGCT
* * * * * *
12676480 GTCGATCCTGTTGCCATAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCC
1 GCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
12676545 TAAGCCAACCGATGAAACGAGCGGGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
66 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGG
***
12676610 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGC
130 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
**
12676675 CAATGATATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT-AATGTTTCA
195 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA-GTTTCA
* ** *
12676739 TGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTCA
259 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTA
* * *
12676804 AAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTGGTGGCA
324 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
12676869 TGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
389 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
12676934 CCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACTTGTTAAATCTCAAATGCTCTTTAAGG
454 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
12676999 GGGTGTGAGTTCTCGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACC
519 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* ** *
12677064 ATCGTACATCATGCGTGCACACCCCCTGGCCCCTCGATCATCGGAACCCCAATGCCACCGGTCAG
584 ATCGCACATCATG-GTGCACACCCCC-GGCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAG
* **
12677129 GTTCTCTGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC-GACACATGCTT
647 GTTCTCTGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG-CACATGCCC
* * * * * *
12677193 GAGCCCAGCATATGCTGCCACAACCCTCGATCCGGTCCGATCTTACACT-GGAATGAACTCCATT
711 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
12677257 TGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGTGCGTGAGGGGCGCTC
776 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG-CGGGCGCTC
* * *
12677322 AGCT-GGCCAGAGGGGCGGGATGCGCAAGCTGGGGATC-GTCTGGGTCCCCCTCTGCGTGCT
840 AGCTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCCGGGTCCCCCTCTACGTGCT
* * * * *
12677382 GCCGATCCTGCTACCACAACCCTCAATCCGGTTTGATCTTAGACTAGGAAGGAACTCCGTGTGCC
1 GCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
12677447 TAAGCCAACCGACGAAATGAGCGCGCGGGCGGGCAGGCGGGCACTACGCCGACCAGAGAGGCGGG
66 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * *
12677512 ATGCGCAAGCCTTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCATGT
130 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * *
12677577 CAATGCCATTTTTATGGCTGGTAAATTCATACAATAGTACCTTAAGCCTTCACGTGAAGTTTCAT
195 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
*
12677642 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTCTGGTTCGGGATTTTTTAA
260 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAA
* *
12677707 AA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGCAT
325 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
12677771 GCACAAAAAAATTCAGCTAAAAAATCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTC
390 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
12677836 CCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
455 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
12677901 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCA
520 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
12677966 TCGCCCATCAT-GT--ACGCACAC--CCCC-CGA-CTGCCGGAACCCCAATGCCGCCGGTTAGGT
585 TCGCACATCATGGTGCACACCCCCGGCCCCTCGATC-GCCGGAACCCCAATGCCGCCGGTCAGGT
* * * ** * * * * *
12678024 TCTCTGGTGATACTCTGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGTATATGCTCGAA
649 TCTCTGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * *
12678089 ACCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATTC
714 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
** * * *
12678154 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCACTCA-AT
779 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCT
* * *
12678218 CGGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCGGT-CGGGTCCCCCTCTACGTGCT
844 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCCGGGTCCCCCTCTACGTGCT
* * * *
12678275 GTCGATCCTGCTACCACAACCCTCCATCCGGTCTGATCTTAGACTGGCAATCAACTCCGTATGCC
1 GCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
12678340 TAAGCCAACCGACGGAAATGAGTGGACGGGCGGACGTGCGGGCACTGCGCCGGCTAGAGAGACGG
66 TAAGCCAACCGAC-GAAACGAGCGGGCGGGCGGGCG-GCGGGCACTACGCCGGCCAGAGAGACGG
* * **
12678405 GATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGTGTG
129 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* ** * *
12678470 TCAACACCATTTTTATGGGTTGTAAATTCA-ACAATGGTCCCCTAAGCCTTCACGTGAAG-TTCA
194 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * * *
12678533 TGGCGACACAACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTA
259 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTA
* * *
12678598 AAATTTTTTCGAAAGGAGTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCA
324 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* *
12678663 TGCACAAAAAAATTCAGCTAAAAACTCAAAGTATACAA-ATTTTGTGACCATTTGAAAAAAGTGT
389 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
12678727 CCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
454 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
12678792 GGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
519 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
12678857 ATCGCACATCAT-GTG--CGCGCAC--CCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGG-
584 ATCGCACATCATGGTGCACACCCCCGGCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
* * *
12678915 --T-T--T--T--T-CGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAG
649 TCTCTGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * ** *
12678970 CCCAGGATGTGCAGCCACAACCCTCCATCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGC
714 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
12679035 TTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATAAAACGACCGTGCGGGTGCTCAG-T
779 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCT
** * * *
12679099 CGGCCAGAGGGGCAAGATGCGCAAGTCGGGGATCGGT-TGGGTCCCCCTCTACGTGCT
844 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCCGGGTCCCCCTCTACGTGCT
* * * *
12679156 GCCGATCCTGCTACTACAACCCTCCATCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCC
1 GCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * **
12679221 TAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGTGGGCACTATGCCGGCCAGAGAGGTGGG
66 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGG
* *
12679286 ATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGC
130 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
12679351 CAATGCCATTTTTAAT-GCTTGTAAATTCACACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCA
195 CAATGCCATTTTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * *
12679415 TGGTAAGACGACTCGTTTTTTATTTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
259 TGGCAAGACGACTCGTTTTCTA-TTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTT
* * *
12679480 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTTTTGGG
323 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
12679545 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
388 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * *
12679610 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACGTGTAAAATTTCAAATGCTCTTTAAA
453 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
12679675 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACG
518 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
12679740 CATC-TACATCAT-GTGCACACAGCCCCATCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCG
583 CATCGCACATCATGGTG--CACA-CCCC--CGG-CCCCTCGATCGCCGGAACCCCAATGCCGCCG
*
12679803 GTCA-G------G-T--T-CTCCGACGA---TGCTCCGACGAAGAAAAATGCGGCACCAGCACAT
642 GTCAGGTTCTCTGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * * ** *
12679854 GCCTGAGCCTC-GCATGTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTACGAATGAACA
707 GCCCGAGCC-CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
12679918 CTGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGC
771 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
* * *
12679983 GCTCAG-TCGGCCATAGGGCCGGGATGCGCAAGCCGGGGATCAG-CCGGGTCCCCCTCTGCGTG-
836 GCTCAGCTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCCGGGTCCCCCTCTACGTGC
12680045 T
901 T
* ** ** * *
12680046 GGCCGATCCTGCAACCGTAACCCTC-AGTCCAATTTGATCTTAGACTGGGAATGAACTTCGTATG
1 -GCCGATCCTGCTACCACAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
12680110 CCTAAGCCAACCGAAGAAACGAGCGGACGGGTGGGCGAGCGGGCACTACGTCGGCCAGAAAGGCG
64 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG-GCGGGCACTACGCCGGCCAGAGAGACG
* * * *
12680175 GCATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTTAAATTTCTGCAT
128 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* * *
12680240 GCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTACCTTAAGCCATCACGTGAAGTTTC
193 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
12680305 ATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTAGTGGTTCGGGATTTTTT
258 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTT
** * * *
12680370 AAAATTTTTTCAAAAGGGGTTTTGGCCCCAAACTTGGTAGACATGATCCTTATATTTTTGTTGGC
323 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
12680435 ATGCACAAACAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
388 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * *
12680500 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACGTGTAAAATTTCAAATGCTCTTTAAA
453 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
12680565 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACG
518 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
12680630 CATCGTACATCAT-GTGCACA---CAGCCCCCTCG---GCC----CCCCAATGCCACCGGTCA-G
583 CATCGCACATCATGGTGCACACCCCCGGCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * **
12680683 ------G-T--T-CTCCGACGA---TGCTCCGGCGAAGAAAAATATGGCACCAGCACATGCCCGA
648 TTCTCTGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * * * * * ** *
12680735 GCCTAGGATGCGTTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTACGAATGAACACCGTATG
713 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
12680800 GTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAG-
778 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
12680864 TCGGCCAGAGGGCCAGGATGCGAAAGCCGGGGATCAAT-CGGGTCCCCCTCCACGTGCG
843 TCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCCGGGTCCCCCTCTACGTGCT
* * ** * * * *
12680922 GTCGATCCTGCAACCGTAACCCTC-AGTCCGATTTGATCTTAGACTGGGAATGAACTTCATATGC
1 GCCGATCCTGCTACCACAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
12680986 CTAAGCCAACCGAAGAAACGAGCGGGCGGGCGGGCGGGCGAGCGGGCACTACGTCAGCCAGAGAG
65 CTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGCG-GCGGGCACTACGCCGGCCAGAGAG
* * * *
12681051 GCGGGATGCGCAAGCCGTGGATCGATGGGGCGGTAGGTGGGTTTAGGCACATCTTTATATTTCTG
125 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* *
12681116 CATGCCAATGCCATTTTTTATGGCCTGTAAATGT-ATACAATGGTACCTTAAGCCTTCACGTGAA
190 CATGCCAATGCCA-TTTTTATGGCTTGTAAAT-TCATACAATGGTCCCTTAAGCCTTCACGTGAA
* *
12681180 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGTGGTTCAGGAT
253 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGAT
* * *
12681245 TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTT
318 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
12681310 TTGGCATGCACAAACAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
383 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
12681375 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
448 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
12681440 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCA
513 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
12681505 GCA--C--CG---ATCA---T----------------T--A------GAACCCCAATGCCGCCGG
578 GCACCCATCGCACATCATGGTGCACACCCCCGGCCCCTCGATCGCCGGAACCCCAATGCCGCCGG
* * *
12681536 TTAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG
643 TCAGGTTCTCTGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* ** *
12681601 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGAGAATGAACTCC
708 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * * **
12681666 TTATGCTTAGACCGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTAC
773 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
* * * * * * **
12681731 TCAGC-CGACCAGAGGGGCGGGATGCGCAAGTCGGGGATC-GGCCCGATCCTCCTCTGTGTGCT
838 TCAGCTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCCGGGTCCCCCTCTACGTGCT
* * * * * ** *
12681793 ACCGATCCTACTGCCGCAACCCTCGGTCCGGTCCCATCTTAGACTGGGAATGAACTCTGTATGCC
1 GCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * *
12681858 TACGCCAACCGACAAAATGAGCGGGCAGGCAGGTG-GGTGGGCACTATGCTGGCCAGAGAGACGG
66 TAAGCCAACCGACGAAACGAGCGGGCGGGC-GG-GCGGCGGGCACTACGCCGGCCAGAGAGACGG
* * *
12681922 GATGCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCTG
129 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* * * *
12681987 CCAATGCCATTTTTATGGCTAGTAAATTCATACAACGGTCCCTTAAGCCTGCACGTGAAGTTTTA
194 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
12682052 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTATGATTCGGGATTTTTTA
259 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTA
* ** * *
12682117 AAATTTTTTTGGAATAAGTGTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
324 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
12682182 TGTACAAAAAAATTCAGCTAAAAACTC-AATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
389 TGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
12682246 TCCCAATTTCTGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
453 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
12682311 GGGGTGTGAGTTCACGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
518 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* *
12682376 CATCGCACATCATGAGCGCACACCCCACCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGG
583 CATCGCACATCATG-GTGCACA--CC-CCCGG-CCCCTCGATCGCCGGAACCCCAATGCCGCCGG
* * * ** * *
12682441 TCAGGTTCTC-CATCGATGCTCCGGCAATGGTGCCCCGGTGAAGAAAAATGCAGCACCAACACAT
643 TCAGGTTCTCTGAT-GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * ** *
12682505 GCCTGAGCCCAGTATGTGCTGCCGTAACCCTCGGTCTAGTCCGATTTTAGACTGGGAATGAACTC
707 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
12682570 CGTATGC
772 CGTATGC
12682577 CTAAGCCAAC
Statistics
Matches: 6195, Mismatches: 663, Indels: 267
0.87 0.09 0.04
Matches are distributed among these distances:
857 16 0.00
858 2 0.00
864 1 0.00
865 3 0.00
866 349 0.06
867 100 0.02
868 13 0.00
869 1 0.00
870 2 0.00
871 253 0.04
873 8 0.00
875 313 0.05
876 2 0.00
878 1 0.00
879 114 0.02
880 482 0.08
881 305 0.05
882 29 0.00
883 148 0.02
884 152 0.02
885 1 0.00
886 1 0.00
887 1 0.00
888 3 0.00
889 5 0.00
890 298 0.05
891 443 0.07
892 272 0.04
893 373 0.06
894 229 0.04
895 207 0.03
896 138 0.02
897 97 0.02
898 437 0.07
899 4 0.00
900 1 0.00
901 318 0.05
902 488 0.08
903 55 0.01
904 52 0.01
905 270 0.04
906 208 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAA
ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGGTGCACACCCCCGGCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
TCTGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTCG
GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTCCGGGTCCCCCTCTACGTGCT
Found at i:12679037 original size:26 final size:26
Alignment explanation
Indices: 12679008--12679060 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12678998 CCGGTCCGAT
*
12679008 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12679034 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12679060 C
1 C
12679061 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12679949 original size:26 final size:26
Alignment explanation
Indices: 12679900--12679950 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
12679890 CAGTCCGATC
*
12679900 TTAGACTACGAATGAACACTGTATGG
1 TTAGACTACGAATGAACACCGTATGG
** *
12679926 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTACGAATGAACACCGTATG
12679951 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTACGAATGAACACCGTATGG
Found at i:12680039 original size:891 final size:887
Alignment explanation
Indices: 12671902--12682576 Score: 12173
Period size: 866 Copynumber: 12.1 Consensus size: 887
12671892 GCCAATCCTA
* ** * *
12671902 CTGCCGCAACCTTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGA
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * *
12671967 ATAAACTCCGTATGCC-AAGGTCAACCCATGAAACGAGCGTACGGGTGCTCA-ACTAGCCAGAGG
66 ATGAACTCCGTATGCCTAA-GTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTC-GGCCAGAGG
* * * * **
12672030 GGCGGGATGCGCAAGTCGAGGATCGGTCGGGTCCCCCTCTACGTG-TCGTCGATCCTGCTACTGC
129 GGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCT-GCCGATCCTGCTACCAC
* * * * * * *
12672094 AA-CCTTCAGCCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCAAAGCCAACCGACGAA
193 AACCCTCCATCC-CGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
* * * * *
12672158 ACGA--------ACGAGCGGGAGGGCACTACGCCGGCC-GAGAGATGGGATGCGCAAGGCGTGGA
257 ACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
12672214 TCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCT-AAGTGCCAATGCCATTTTTAT
322 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTAT
* * *
12672278 GGCTTGTAAATTCATACAACGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTCGT
386 GGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * * *
12672343 TTTCTATTTTTCACGA-TTTTCAAACCTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTTGAAAA
450 TTTCTATTTTTCACGATTTTTGAAA-CTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * * *
12672407 GCGTTTTGGCCCCAAACTTGGTAGACATGATCCCTGTATTTTTTTTGGCATGCACAAAAAAATTC
514 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
12672472 AGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACAC
579 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
12672536 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTGG
644 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
** * *
12672601 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAATACCCATCGCACATCATATG
709 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTG
* * ** * *
12672666 CGCACACCCCCCTCGCCCCCCGATCATCGGAACCGCAATGCCGCCGGTCAGGTTCTCCGGTGATG
774 C-CACACCCCAC-GGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCC---GA--
* * * * *
12672731 CTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGGACCAACACATGCCCGAGCCCAGCATGTG
832 ---C---GA--GTGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
* * *
12672795 ATGCCGCAA-CC-C--T-C-G---G-TC-----C-----A-G---TCC-AAT-CTTAGATTGGGA
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* ** * * * *
12672834 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGTGCTCAGTTGGCCAGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
* * * * * * * * * * *
12672899 CAGGATACGCAAGACGGGGATCGGTCGGGTCCCTCTCTGCGTGTTGTCGATCCTACTTCCGCAAC
131 CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAAC
** ** * * * * * * *
12672964 CCTCGGTCTGGTCCGATCTTATACTGCGAATGAACTCCGTATGCCTAAGCCAATCTATGAAACGA
196 CCTCCATCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA
* * * * * *
12673029 GCGGGCGGACGGGCGGGCGGTCATTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATTGA
261 GCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
12673094 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
326 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
** * *
12673159 GTAAATTCATACAATGGTCCTTTAAAACTTCACGTGATGTTTCATGGCAAGACGACTTGTTTTCT
391 GTAAATTCATACAATGGTCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * * * *
12673224 ATTTTTCATAATTGTTGAAA-GTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTT
455 ATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
** * *
12673288 TGGAACCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAA
520 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
12673353 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAAT
585 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
12673418 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTAAGTTCTCGAGGTTT
650 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
12673483 GATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGTACATCATGTGCGCACA
715 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGC-CACA
* * * *
12673547 CCTCCCCCTCCGGCCCCCCCGATCGCCAGAACCCCAATGCCTCCGGTCAGGTTCTCCGGCGATGC
779 ----CCCC-ACGG-CCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGA-G-
* * * * *
12673612 TCTGGCGATGGTACCCTGGCGAAGAAAAATGCAGTACCAACACATG-CTCGAGCCCAGCATGTT
836 --T-GC-----T--CC-GACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTG
* * * * * * * *
12673675 TTGCCACAACCCTCGGTCCAGTCCAATCCTAGACTGGGAATGAACTCTGTATACTTAGACTAGGA
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * * *
12673740 ATGAGCTCCATATGCCTAAGTCAACCCACAGAATGAGCGTACGGGTGCTCAG-CAGGCCAGAGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTC-GGCCAGAGGG
* * * ** * * *
12673804 GTGGGATGCGCAAGTCGAGGATCGATCGGGACCCCCTTTACGTGCT---G-T-C-GC-A--A-GA
130 GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAA
* * * * * *
12673859 --CT-CAGTTCGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCCCAAGCCAACTGACGAAAC
195 CCCTCCA-TCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC
* * * * *
12673921 GAGCGGGCGGGCGGACGAGCGGGCACTATGCCGACCAGAGAGACGGGATGCGTAAGCCGTGGATC
259 GAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
12673986 GATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
324 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
12674051 TTG------C---C--T--T-C---A-----C-C-TGAAGTTTCATGGCAAGACGACTCGTTTTC
389 TTGTAAATTCATACAATGGTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** ** * *
12674092 TATTTTTCATGATTTTTGAAACTTTTTACGG-TCTATGATTTTTTAAAATTTTTTCGAAAGGATT
454 TATTTTTCACGATTTTTGAAACTTTTTGTGGTTC-GGGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
12674156 TTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
518 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * * * *
12674221 ACAAACTCGAAGTGTAGAAGATTTTGGGACCATTAGAAAAAAGTGTCCCTATTTCAGACACTTTA
583 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
12674286 ATAGCTACTGGCAGGAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
648 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
12674351 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATGATGTGCGCA
713 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGC-CA
* * * * *
12674416 TACCCCCCGACCCACCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCC
777 CACCCCACGGCCC-CCCGATCGCCGGAACCCCAATGCCACCGGTCAGG-----T-----T-CTCC
* * * * * *
12674481 GACGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCCGAGCCTAGCATGTG
830 GACGA--GTGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
* ** *
12674541 CTGCCGCAACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGA
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
12674606 ATGAACTCCGTATGCCGAAGTCAACCCATGAAAACGAGCGTGCGGGTGCTCAG-CTGGCCAGAAG
66 ATGAACTCCGTATGCCTAAGTCAACCCAT-AAAACGAGCGTGCGGGCGCTCAGTC-GGCCAGAGG
* *
12674670 GACAGGATGCGCAAGCC---GA---------T----C-CTA----CT---G--CC-G------CA
129 GGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACA
* * * *
12674702 ACCGTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC
194 ACCCTCCATCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC
* * *
12674767 GA----GCGTGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAATCCGTGGATC
259 GAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
*
12674828 GATA-GGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
324 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* *
12674892 TTGTAAATCCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
389 TTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * **
12674957 CTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATGTTTTAAAATTTTTTCAAAAGGAGT
453 CTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
12675022 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAGAAAACAATTCAGCT
518 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
12675087 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTA
583 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
12675152 ATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGCGTTCTCAAGGT
648 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * * *
12675217 TTGATGAGGGATAGGGGGCAAACATAAGGGCCGAGTACTAGCACCCATCGCACATCATGTGCGCA
713 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGC-CA
* * * *
12675282 CACCCCCCCAGG-CCCCTGATCGACGGAACCCCAATGTCACCGGTCAGGTTCTCCGACGATGCTC
777 CA-CCCCAC-GGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGA-G-T-
**
12675346 CAGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTG
837 --GC-----T--CC-GACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
* * * * * ** *
12675407 CTACTGTAACCCACGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGCCTGGGA
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
*
12675472 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CTGGCCAGAGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTC-GGCCAGAGGG
* * * * * *
12675536 GCAGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGGTCCTGTTACTACAA
130 GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAA
* * * * * * * *
12675601 TCCTCGATTCAGTCTGATCTTAGATTGCGAATGAACTCCGTACGCCTAAGCCAACCGAC-AAA--
195 CCCTCCATCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACG
* * * * *
12675663 A-CGAGCGGGCGGGCGGGCGGGCACCATG-CGGCCAGAGAGACGGGATGTGCAAGCCGTGAATCG
260 AGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
12675726 ATAGGGTGGTAGGTGGGTTT-GGCACATCTTCATTTTTCTACATGCCAATGCCATTTTTATGGCT
325 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * *
12675790 TGTAAATTCA-GCAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTT
390 TGTAAATTCATACAATGGTCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
** * *
12675854 TATTTTTCATAATTTTTGAAA-TTTTTGTGGTTCGAGATTTTTTAAAATTTTGTCGGAAGGAGTT
454 TATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
12675918 TTGGCCCCAAACTTGGTAGACGCGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTA
519 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
12675983 AAAACTCGAAGTGTATAAGATTTTGTGACTATTTAAAAAAAAGTGTCCCCATTTCAGACACTTTA
584 AAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
12676048 ATTGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGT
648 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * *
12676112 TTGATGAGGCATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
713 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGC-CA
* * *
12676177 CACCCTCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCAATCAGGTTCTCCGACGATTC
777 CA----CCCCACGGCCCCCCGATCGCCGGAACCCCAAT---GCC-A-CCGG---T-C-A-GGTTC
* ** * *
12676242 TCCGACGGTGGTGCTCCGGTGAAGAAAAATGCGGCACCAACACATGCCTGAGCCTAGCATGTG
827 TCCGAC-G-AGTGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
* * *
12676305 CTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
12676370 ATGAACTCCATATGCCTAAGTCAACCCACAGAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
* * * * * * * * *
12676435 TGGGTTGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGTTGCCATAAC
131 CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAAC
** * *
12676500 CCTCGGT-CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG
196 CCTCCATCCCG-TCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACG
* *
12676564 AGCGGGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
260 AGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*** **
12676629 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGATATTTTTATGGCT
325 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
*
12676694 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT-AATGTTTCATGGCAAGACGACTCATTTT
390 TGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAA-GTTTCATGGCAAGACGACTCGTTTT
** * *
12676758 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTCAAAATTTTTTCGGAAGGTGT
453 CTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * *
12676823 TTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTGGTGGCATGCACAAAACAATTCAGCT
518 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
12676888 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
583 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
12676953 ATTGCTACTGGCAGCAAACTTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGTGGT
648 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
12677018 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGTACATCATGCGTG-C
713 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCAT--GTGCC
* **
12677082 ACACCCC-CTGGCCCCTCGATCATCGGAACCCCAATGCCACCGGTCAGGTTCTCTGGTGATGCTC
776 ACACCCCAC-GGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCA--------GGT--T-CTC
* * *
12677146 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC-GACACATGCTTGAGCCCAGCATATG
829 CGACGA--GTGCTCCGACGAAGAAAAATGCGGCACCAG-CACATGCCTGAGCCCAGCATGTG
* * * * * *
12677207 CTGCCACAACCCTCGATCCGGTCCGATCTTACACT-GGAATGAACTCCATTTGCTTAGACTAGGA
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
12677271 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGTGCGTGAGGGGCGCTCAG-CTGGCCAGAGG
66 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTG-CGGGCGCTCAGTC-GGCCAGAGG
* * * *
12677335 GGCGGGATGCGCAAGCTGGGGATCGTCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACA
129 GGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACA
* * * * * * * *
12677400 ACCCTCAATCCGGTTTGATCTTAGACTAGGAAGGAACTCCGTGTGCCTAAGCCAACCGACGAAAT
194 ACCCTCCATCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC
* * * * * *
12677465 GAGCGCGCGGGCGGGCAGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCTTGGATT
259 GAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
12677530 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGCATGTCAATGCCATTTTTATGGC
324 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* *
12677595 TGGTAAATTCATACAATAGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
389 TTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
*
12677660 CTATTTTTCACGATTTTTGAAACTTTTTCTGGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGT
453 CTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
12677724 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCT
518 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
12677789 AAAAAATCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
583 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
12677854 ATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
648 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* **
12677919 TTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCCCATCATGT-----
713 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCCAC
* * * * *
12677979 A-CGCAC-ACCCCCCGA-CTGCCGGAACCCCAATGCCGCCGGTTAGGTTCTCTGGTGATACTCTG
778 ACCCCACGGCCCCCCGATC-GCCGGAACCCCAATGCCACCGGTCAGGTTCTC---CG--A--C--
* * * * **
12678041 GTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGTATATG-CTCGAAACCAGCATGTG
833 --GA--GTGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTG
* * * * *
12678100 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATTCTTAGACTGGGA
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
12678165 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCACTCAATCGGCCAGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
* * * *
12678230 TGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAAC
131 CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAAC
* * * * *
12678295 CCTCCATCCGGTCTGATCTTAGACTGGCAATCAACTCCGTATGCCTAAGCCAACCGACGGAAATG
196 CCTCCATCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC-GAAACG
* * * * * * *
12678360 AGTGGACGGGCGGACGTGCGGGCACTGCGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCG
260 AGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* ** * ** *
12678425 ATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGTGTGTCAACACCATTTTTATGGGT
325 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * * * *
12678490 TGTAAATTCA-ACAATGGTCCCCTAAGCCTTCACGTGAAG-TTCATGGCGACACAACTCGTTTTT
390 TGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
12678553 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTT
454 TATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
12678618 TTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
519 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
12678683 AAAACTCAAAGTATACAA-ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
584 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
12678747 TGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATT
649 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
12678812 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG---C-
714 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCCACA
* * ** * * *
12678873 GCGCA---CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTTTTCGACGATGGTGCCCC
779 CCCCACGGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGA--GTGCTCC
* * *
12678935 GATGAAGAAAAATACGGCACCAGCACATG-CTCGAGCCCAGGATGTG
842 GACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTG
* * ** *
12678981 CAGCCACAACCCTCCATCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGA
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
12679046 ATGAACTTCGTATGCATAAGTCAACCCATAAAACGACCGTGCGGGTGCTCAGTCGGCCAGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
** * ** *
12679111 CAAGATGCGCAAGTCGGGGATCGGTTGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTACAAC
131 CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAAC
*
12679176 CCTCCATCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGA
196 CCTCCATCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA
* * ** *
12679241 GCGGGCGGGCGGGCGGGTGGGCACTATGCCGGCCAGAGAGGTGGGATGCGCAAGTCGTGGATCGA
261 GCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
12679306 TAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAAT-GCT
326 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT-ATGGCT
* * *
12679370 TGTAAATTCACACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTT
390 TGTAAATTCATACAATGGTC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
12679435 TATTTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
454 TA-TTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * *
12679500 TTTGGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCT
518 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
12679565 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
583 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * * *
12679630 ATGGCTACTGGCAGGAAACGTGTAAAATTTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGT
648 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
12679695 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATC-TACATCATGTGCACA
713 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGC-CA
12679759 CAGCCCCATCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGA-TGC
777 CA-CCCCA-CGG-CCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGAGTGC
12679823 TCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTC-GCATGTG
839 TCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCC-CAGCATGTG
* * * ** * * *
12679872 CTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTACGAATGAACACTGTATGGTTAGACTGGGA
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
12679937 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCGCTCAGTCGGCCATAGGGC
66 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
* * * **
12680002 CGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTGCGTG-TGGCCGATCCTGCAACCGTAA
131 CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCT-GCCGATCCTGCTACCACAA
** * *
12680066 CCCT-CAGTCCAATTTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGCCAACCGAAGAAA
195 CCCTCCA-TCCCGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAA
* * * * * * *
12680129 CGAGCGGACGGGTGGGCGAGCGGGCACTACGTCGGCCAGAAAGGCGGCATGCGCAAGCCGTGGAT
258 CGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
12680194 CGATGGGGTGGTAGGTGGGTTTAGGCACATCTTTAAATTTCTGCATGCCAATGCCATTTTTATGG
323 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * *
12680259 CCTGTAAATTCATACAATGGTACCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCATTT
388 CTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * ** *
12680324 TCTATTTTTCACAATTTTTGAAACTTTTAGTGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGGG
452 TCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
12680389 TTTTGGCCCCAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCATGCACAAACAAATTCAGC
517 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
12680454 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
582 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * * *
12680519 AATGGCTACTGGCAGGAAACGTGTAAAATTTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGG
647 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
12680584 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGTACATCATGTG-CA
712 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCCA
12680648 CA---CA--G-CCCCC--TCGGCC----CCCCAATGCCACCGGTCAGGTTCTCCGACGA-TGCTC
777 CACCCCACGGCCCCCCGATC-GCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGAGTGCTC
* ** * * * *
12680700 CGGCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCTAGGATGCG
841 CGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
* * * * * ** * *
12680747 TTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTACGAATGAACACCGTATGGTTAGACTGGGA
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
12680812 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAGTCGGCCAGAGGGC
66 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
* * *** * * * * **
12680877 CAGGATGCGAAAGCCGGGGATCAATCGGGTCCCCCTCCACGTGCGGTCGATCCTGCAACCGTAAC
131 CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAAC
* * *
12680942 CCT-CAGT-CCGATTTGATCTTAGACTGGGAATGAACT-TCATATGCCTAAGCCAACCGAAGAAA
196 CCTCCA-TCCCG-TCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAA
* * *
12681004 CGAGCGGGCGGGCGGGCGGGCGAGCGGGCACTACGTCAGCCAGAGAGGCGGGATGCGCAAGCCGT
258 CGAGCGGGCGGGCGGGC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
12681069 GGATCGATGGGGCGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTT
319 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTT
*
12681134 TATGGCCTGTAAATGT-ATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
383 TATGGCTTGTAAAT-TCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
12681198 TCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTCAG
446 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
12681263 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCACAAACAAA
511 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
12681328 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
576 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
12681393 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
641 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
12681458 TCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCA--C--CG---ATCAT
706 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCAT
** * * ** ** * *
12681516 -TAG--A-ACCCCAATG-CCGCCGGT--TAGG-TTCTC--TG--A-C-G--A--TGCTCCGACGA
771 GT-GCCACACCCCACGGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGA
* * *
12681563 TGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG
835 --GTGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
* ** * * * *
12681618 CTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGAGAATGAACTCCTTATGCTTAGACCGAGA
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
** ** * *
12681683 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTACTCAGCCGACCAGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
* * * * ** * * * *
12681748 CGGGATGCGCAAGTCGGGGATCGGCCCGATCCTCCTCTGTGTGCTACCGATCCTACTGCCGCAAC
131 CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAAC
** * ** * * *
12681813 CCTCGGTCCGGTCCCATCTTAGACTGGGAATGAACTCTGTATGCCTACGCCAACCGACAAAATGA
196 CCTCCATCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * *
12681878 GCGGGCAGGCAGGTGGGTGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAAACCGTGGATCGA
261 GCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
12681943 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCTGCCAATGCCATTTTTATGGCTA
326 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * *
12682008 GTAAATTCATACAACGGTCCCTTAAGCCTGCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCT
391 GTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * ** *
12682073 ATTTTTCACGATTTTTCAAACTTTTTATGATTCGGGATTTTTTAAAATTTTTTTGGAATAAGTGT
455 ATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
12682138 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTACAAAAAAATTCAGCTAA
520 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
12682203 AAACTC-AATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCTGACACTTTAA
585 AAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
12682267 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGAGGTT
649 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
12682332 TGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCAC
714 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGC-CAC
*
12682397 ACCCCACCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCATCGATGCTC
778 ACCCCA--CGG-CCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCT-C--CGA-----
* ** * * *
12682462 CGGCAATGGTGCCCCGGTGAAGAAAAATGCAGCACCAACACATGCCTGAGCCCAGTATGTG
832 C-G--A--GTGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
* ** *
12682523 CTGCCGTAACCCTCGGTCTAGTCCGATTTTAGACTGGGAATGAACTCCGTATGC
1 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
12682577 CTAAGCCAAC
Statistics
Matches: 8486, Mismatches: 963, Indels: 654
0.84 0.10 0.06
Matches are distributed among these distances:
841 59 0.01
842 55 0.01
844 1 0.00
846 61 0.01
847 2 0.00
850 3 0.00
851 1 0.00
852 1 0.00
854 2 0.00
855 10 0.00
856 2 0.00
858 2 0.00
859 1 0.00
861 1 0.00
864 3 0.00
865 55 0.01
866 972 0.11
867 313 0.04
868 25 0.00
869 55 0.01
870 243 0.03
871 297 0.03
872 10 0.00
873 14 0.00
874 6 0.00
875 516 0.06
876 270 0.03
877 23 0.00
878 8 0.00
879 109 0.01
880 575 0.07
881 312 0.04
882 30 0.00
883 153 0.02
884 155 0.02
885 9 0.00
886 5 0.00
887 4 0.00
888 1 0.00
889 12 0.00
890 301 0.04
891 445 0.05
892 275 0.03
893 360 0.04
894 412 0.05
895 214 0.03
896 137 0.02
897 98 0.01
898 376 0.04
899 13 0.00
900 2 0.00
901 323 0.04
902 480 0.06
903 62 0.01
904 53 0.01
905 233 0.03
906 308 0.04
907 1 0.00
908 4 0.00
909 11 0.00
910 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAAC
CCTCCATCCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA
GCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCCACACC
CCACGGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGAGTGCTCCGACG
AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
Found at i:12680813 original size:26 final size:26
Alignment explanation
Indices: 12680775--12680825 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12680765 CGGTCTGATC
12680775 TTAGACTACGAATGAACACCGTATGG
1 TTAGACTACGAATGAACACCGTATGG
** *
12680801 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTACGAATGAACACCGTATG
12680826 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACTACGAATGAACACCGTATGG
Found at i:12681682 original size:26 final size:26
Alignment explanation
Indices: 12681645--12681697 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12681635 CTGGTTTGAT
* *
12681645 CTTAGACTGAGAATGAACTCCTTATG
1 CTTAGACCGAGAATGAACTCCGTATG
12681671 CTTAGACCGAGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
12681697 C
1 C
12681698 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:12684076 original size:26 final size:26
Alignment explanation
Indices: 12684040--12684092 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12684030 CTGGTCCCTT
12684040 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12684066 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12684092 C
1 C
12684093 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12684256 original size:26 final size:26
Alignment explanation
Indices: 12684227--12684277 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12684217 GGTCCAATCC
*
12684227 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
12684253 TAGACTAGGAATGAATTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
12684278 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:12684347 original size:185 final size:185
Alignment explanation
Indices: 12684011--12684436 Score: 505
Period size: 185 Copynumber: 2.3 Consensus size: 185
12684001 GCCCAGCAAG
* * ** * *
12684011 TGCTACCGCAACCCTTGGTCTGGTCCCTTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTACCGCAACCCTCGGTCCGGTCCAATCATAGACTGGGAATGAACTCCGTATGCTTAGACTAG
* * ** * *
12684076 GAATGAACTCTGTATGCCTAAGTCAACCCATAGAACGAGCGTACGGGTGCTCAGTCGGGTAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCAGAGAACGAGCGTACGGGTGCTCAACCGGCTAGAAG
* * *
12684141 GGCGGCACGCGCAAGTCGGGGATCAA-TCGGGTCCCCCTCTGTGTGCTACCGATCC
131 GGCGGCACGCACAAATCGGGGATCAACT-GGGTCCCCCTCTGCGTGCTACCGATCC
* *
12684196 TGCTACCGTAACCCTCGGTCCGGTCCAATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
1 TGCTACCGCAACCCTCGGTCCGGTCCAATCATAGACTGGGAATGAACTCCGTATGCTTAGACTAG
* * * * *
12684261 GAATGAATTCCGTATGCCTATGTCAACCCACGA-AACGAGGGTGCGGGTGTTCAACCGGCTAGAA
66 GAATGAACTCCGTATGCCTAAGTCAACCCA-GAGAACGAGCGTACGGGTGCTCAACCGGCTAGAA
* * * * * * *
12684325 GGGTGGGATGCATAAATCGGGGATCGACTGGGTCCCCCTCTGCGTGTTATCGATCC
130 GGGCGGCACGCACAAATCGGGGATCAACTGGGTCCCCCTCTGCGTGCTACCGATCC
* ** * * *
12684381 TACTGTCGCAACCCTCGATCCGGTCCGATCATAGACTAGGAATGAACTCCGTATGC
1 TGCTACCGCAACCCTCGGTCCGGTCCAATCATAGACTGGGAATGAACTCCGTATGC
12684437 CTAAGCCAAC
Statistics
Matches: 203, Mismatches: 36, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
185 201 0.99
186 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (185 bp):
TGCTACCGCAACCCTCGGTCCGGTCCAATCATAGACTGGGAATGAACTCCGTATGCTTAGACTAG
GAATGAACTCCGTATGCCTAAGTCAACCCAGAGAACGAGCGTACGGGTGCTCAACCGGCTAGAAG
GGCGGCACGCACAAATCGGGGATCAACTGGGTCCCCCTCTGCGTGCTACCGATCC
Found at i:12685847 original size:26 final size:26
Alignment explanation
Indices: 12685818--12685870 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12685808 CCGATCCAAT
*
12685818 CTTAGACTAGGAATGAGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
12685844 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12685870 C
1 C
12685871 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12686763 original size:26 final size:26
Alignment explanation
Indices: 12686734--12686786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12686724 CCAATCCGAT
12686734 CTTAGACTGGGAATCAACTCCGCATG
1 CTTAGACTGGGAATCAACTCCGCATG
* *
12686760 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGCATG
12686786 C
1 C
12686787 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGCATG
Found at i:12686923 original size:916 final size:900
Alignment explanation
Indices: 12685106--12689596 Score: 5371
Period size: 916 Copynumber: 5.0 Consensus size: 900
12685096 CGTAACCCTC
* * * * *
12685106 AGACTAGGAATGAACTCTGTATGCCTAGGCCAACTGACGAAACGAGCGGGCGGGC--G-GGCGGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAAAG-GCGGGCGGGCGGGTGGCGGG
*
12685168 CACTATGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
64 CACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
12685233 GCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
129 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * * *
12685298 TTAAGCCTTAACGTGAAGTATCACGGCAAGACGACTCGTTTTATATATTTCATGATTTTTGAAAC
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
12685363 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGCAAGGACTTTTGGCCCCAAACTTGGTAGATG
259 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
12685428 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
324 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
12685493 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGT
389 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
12685558 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTGTGATGAGGGATAGGGTGCCAAT
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
* * ** *
12685623 ATAAGGGACAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCTGGGTCCCCCCGATCG
519 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
*
12685688 TCGGAACACCAATGTCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCTCCCG-CGAAG
584 TCGGAAC-CCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGC-CCCGACGAAG
* * *
12685752 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTCCGTCCGATCCAA
647 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGA
* * *
12685817 TCTTAGACTAGGAATGAGCTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
712 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
12685882 CACGAAATGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
777 CACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATC
* * * * * * *
12685947 GGGTCCCCCTCTACCTGCTGTCGATCTTGCTACCGC-AATCCTCGGTAT-GGTCTGATCTT
842 GGGTCCCCCTCTACATGCTGCCGATCCTACTGCC-CTAACCCTCGGT-TCAGTCTGATCTT
* * *
12686006 AGATTGGGAATTAACTCTGTATGCCTAAGCCAACCGACAAAACTACCGGGCGGGCGGGCGGGCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-----------GGCGGGCGG
* * *
12686071 GCGGGTGAGCGGGCACTATGTCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATTGATAGGGTGG
52 GCGGGTG-GCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
12686136 TAGGTGGGTTTAGGCACATCTTGATATTTCTACGGGCCAATACCATTTTTATGGCTTGTAAATTC
116 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
12686201 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCA
181 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
*
12686266 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCC
246 CGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCC
* * *
12686330 AAACTTGGTAGACGTGATTCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCA
310 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
12686395 AAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAAACACTTTAATGGCTACT
375 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
12686460 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGTGTTCTTGCGGATTGATGAGG
440 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
* * * *
12686525 GATAGCGGGCCAATATAAGGGCCAATTTCCAACACCCATCGCACATCATGTGCGCACACCCCCCC
505 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * ** * * *
12686590 AGCCCCCCCGATCATCGGAAGCCCAATGCCATCGATCAGGTTCTCCGGTAATGCTCCGGTGATGG
570 GGCCCCCCCGATCGTCGGAA-CCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGG
* * * * * *
12686655 TGCCCCGACGAAGAAAAATATAGCACTAGCAAATGCCCAAGCCCGGCATGTGCTGCCGCAACCCT
634 TGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
12686720 CGGTCCAATCCGATCTTAGACTGGGAATCAACTCCGCATGCTTAGACTGGGAATGAACTCCGTAT
699 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * ** * *
12686785 GCCTAATTCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGGCCGGAGGGACAGGATGCGCAAG
764 GCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* ** * *** * *
12686850 TCAAGGATC-AGCTGGGTCCCCCTCTGTGTGCTGCCAATCCTACTGCCCTAAGCCTCGGTTCAGT
829 CCGGGGATCGATC-GGGTCCCCCTCTACATGCTGCCGATCCTACTGCCCTAACCCTCGGTTCAGT
**
12686914 CCAATCTT
893 CTGATCTT
* * * * *
12686922 AGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--CGAGTGGGCGGGT---AGGCA
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAGGCGGGCGGGCGGGTGGCGGGCA
* * *
12686982 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGA
66 CTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * * * * *
12687047 ACATCTTCATA---CAATGGTCCCTTAA-GCC----CTCT--CGTG-AAGTT--T-C-ATGG---
131 ACATCTTCATATTTCTA-CGTGCC--AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * * *
12687094 C--AAGAC--GAC-T--TGTTT--T-------CTA-T--TTTTCATGATTTTTGA-AACTTTTTG
193 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC-T-ATTTTTCACGA-TTTTTG
*** * *** ** **
12687139 --CGGTTTGGGATTTTT--------TAAAATTTTTTCGAAAGGAGTTTTGTTCCCAAACTTGGTA
255 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
12687194 G-CATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAAATTGAAGAGTACAA
320 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
12687258 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGGAAAC
385 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
**
12687323 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
450 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
* * * *
12687388 CAATATAAGGGCCAAGTACCAACACCCATCGCACATCATTTGCGCACACACCCCCGGCCTCCCCG
515 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* ** * ** * * * *
12687453 ATCGCCGGAACCCAATGTTGCCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTTCCTCGACAA
580 ATCGTCGGAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGA
* * * *
12687518 AGAAAAATGTGGCACCATCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCC
645 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
* *
12687583 GATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
710 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * * *
12687648 CCCAAGAAATGAGCGTGCGGGCGCTCAGCATGCCAGAGGGTCGGGATGCGCAAGCCGGGGATCAA
775 CCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA
* * **
12687713 TCGGGT--CCC-CT---T-CTG-C-ATGCTA---CCGTAACCCTC-AATCTAGTCTGATCTT
840 TCGGGTCCCCCTCTACATGCTGCCGATCCTACTGCCCTAACCCTCGGTTC-AGTCTGATCTT
** * * *
12687762 AGACTGGGAATGAACTCCGTATGCCTAAGCCAATTGACGAAACGAGCGGGCGGGTGGGCTGGCAG
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAAAG-GCGGGCGGGCGGG-TGGCGG
*
12687827 GCACTACGTC-AGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
63 GCACTACGTCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * * *
12687891 AGGCACATCTTCAAATTTTTATGTGCCAATGCCATTTTTATGGCTTGTATATTCATACAATGGCC
127 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
12687956 CCTTAAGCCATCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAA
192 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * **
12688021 ACTTTTTGTGGTTCGGGATTCTTTAAAATTTTTTCGAAAGGAGTTTTGGACCCAAACTAAGTAGA
257 ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
12688086 CGTGATCCTTGTAGTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGT
322 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
12688151 TTTTGTGACCGTTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCC
387 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
12688215 GTAAAATCTCAAATGCTCTATAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCA
452 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
*
12688280 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACA-CCCCCCGGCCCCCCCGAT
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
* *
12688344 CGTCGGAACCTCAATGCCGTCAGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAA
582 CGTCGGAACC-CAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAA
* * * * * * * * *
12688409 GAAAAATGCGGCACCAACACATGCTC-AGCCTAGAATGTGCTACCGTAACCCTCGGTCCAATCCA
646 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCG
* * * *
12688473 ATCTTAGACTGGGAATGAACTCTGTCTGCTTAGAGTAGGAATGAACTCCGTATGCCTAAGTCAAC
711 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
12688538 CCACGAAACGAGCGTGCGGGTGCTGAGCCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGAT
776 CCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGAT
* * * * * * **
12688603 CGGGTCCCCCTCTGCATACTGCCGATCCTGCTGCCAC-AACGCTCAG-TCTGGTCCAATCTT
841 CGGGTCCCCCTCTACATGCTGCCGATCCTACTGCC-CTAACCCTCGGTTC-AGTCTGATCTT
* * *
12688663 ATACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGC--G-GGCGGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CAAA-AGGCGGGCGGGCGGGTGGCGGG
* * *
12688725 CACTACGTCGGCCAAAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
64 CACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** * *
12688790 GTACATCTTCATATTTCTGTGTGTCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCC
129 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
12688855 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
12688920 TTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCGAACCTTGGTAGATG
259 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * *
12688985 TGATCCTTGAATTTGTTTTGGCATGGACAAAAATATTCAGCTAAAGACTCGAAGTGTACAAGATT
324 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
12689050 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGT
389 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
12689115 AAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
12689180 ATAAGGGCCAAGTACCAGCTCCCATCACACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCG
519 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
* * * *
12689244 TCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGC-CCGGTGATGGTGCCCCGATGAAGA
584 TCGGAA-CCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGA
** * * * * *
12689308 AAAATACGGCACCAAG-ACATGCCCGAGCCCAACATGTGTTGTCGCAACCCTCGGTCTGGTCCGA
648 AAAATGTGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGA
* * * * *
12689372 TCTTAGACAGGGAATGACCTCCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTTAACC
712 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
12689437 CA-TAGAACGAACGTGCGGTTGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGAC
777 CACGA-AATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGAT
* * * * *
12689501 CGGGTCCCCCTCTACATGCTGTCGATTCTACTGTCGTAACCCTCGGTCCAGTCTGATCTT
841 CGGGTCCCCCTCTACATGCTGCCGATCCTACTGCCCTAACCCTCGGTTCAGTCTGATCTT
* *
12689561 AGATTAGGAATGAACTCCGTAT-CCTAAGCCAACCGA
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
12689597 TGAAACGAGC
Statistics
Matches: 3045, Mismatches: 430, Indels: 235
0.82 0.12 0.06
Matches are distributed among these distances:
839 2 0.00
840 53 0.02
841 2 0.00
843 5 0.00
844 10 0.00
845 4 0.00
846 1 0.00
848 77 0.03
849 5 0.00
850 7 0.00
851 1 0.00
852 212 0.07
853 247 0.08
854 37 0.01
855 4 0.00
856 3 0.00
858 1 0.00
859 1 0.00
860 4 0.00
862 9 0.00
863 3 0.00
864 14 0.00
865 5 0.00
867 1 0.00
868 1 0.00
870 4 0.00
872 2 0.00
874 4 0.00
876 1 0.00
877 2 0.00
879 6 0.00
880 14 0.00
881 3 0.00
882 11 0.00
884 4 0.00
885 1 0.00
886 1 0.00
888 4 0.00
889 178 0.06
890 254 0.08
891 77 0.03
892 2 0.00
893 2 0.00
894 3 0.00
895 3 0.00
896 78 0.03
897 362 0.12
898 400 0.13
899 12 0.00
900 47 0.02
901 65 0.02
912 10 0.00
913 2 0.00
914 1 0.00
915 10 0.00
916 772 0.25
917 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAGGCGGGCGGGCGGGTGGCGGGCA
CTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC
GGAACCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAA
ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGT
CCCCCTCTACATGCTGCCGATCCTACTGCCCTAACCCTCGGTTCAGTCTGATCTT
Found at i:12687615 original size:26 final size:26
Alignment explanation
Indices: 12687586--12687638 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12687576 CTGGTCCGAT
* *
12687586 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12687612 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12687638 C
1 C
12687639 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12689573 original size:898 final size:893
Alignment explanation
Indices: 12687052--12689615 Score: 3555
Period size: 898 Copynumber: 2.9 Consensus size: 893
12687042 TAGGAACATC
* * *
12687052 TTCATACAATGGTCCCTTAAGCCCTCTCGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTT
1 TTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
12687117 TCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGTTC
66 TCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG-GC
*
12687182 CCAAACTTGGTAGCA-TGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAAAT
130 CCAAACTTGGTAG-AGTGATCCTTG-AATTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAAAT
* * *
12687246 TGAAGAGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTA
193 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
12687311 CTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
258 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
12687376 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATTTGCGCACACACCC
323 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCC
* ** * * *
12687441 CCGGCCTCCCCGATCGCCGGAA-CCCAATGTTGCCGGTCAGGTTCTTCGACGATGCTCCGACGAT
388 CCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT
* * * * * *
12687505 GGTTCCTCGACAAAGAAAAATGTGGCACCATCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
452 GGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAACATGTGCTGCCGCAACC
* *
12687570 CTCGATCTGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGT
517 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
12687635 ATGCCTAAGTCAACCCAAGAAATGAGCGTGCGGGCGCTCAGCATGCCAGAGGGTCGGGATGCGCA
582 ATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGTGCTCAGC-GGCCAGAGGGGCAGGATGCGCA
* * *
12687700 AGCCGGGGATCAATCGGGT--CCC-CT--TCTGC-ATGCTAC--CGTAACCCTCAATCTAGTCTG
646 AGCCGGGGATCGATCGGGTCCCCCTCTCATCTGCGATCCTACTGCGTAACCCTCAGTCTAGTCTG
** * *
12687757 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATTGACGAAACGAGCGGGCGGGTGGGCT
711 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGC-
* *
12687822 GGCAGGCACTACGTCAGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGG
775 GG-AGGCACTACGTCAGCCAAAAAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
12687887 GTTTAGGCACATCTTCAAATTTTTATGTGCCAATGCCATTTTTATGGCTTGTATA
839 GTTTAGGCACATCTTCAAATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAA
* * *
12687942 TTCATACAATGGCCCCTTAAGCCATCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTT
1 TTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
12688007 TCACGATTTTTGAAACTTTTTGTGGTTCGGGATTCTTTAAAATTTTTTCGAAAGGAGTTTTGGAC
66 TCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-C
** * * *
12688072 CCAAACTAAGTAGACGTGATCCTTGTAGTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAATT
130 CCAAACTTGGTAGA-GTGATCCTTG-AATTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAAAT
* *
12688137 CGAAGTGTACAAGTTTTTGTGACCGTTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
193 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * * *
12688201 CTGGAAGCAAACCCGTAAAATCTCAAATGCTCTATAAGGGGGTGTGAGTTCTTGAGGTTTGATAA
258 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
12688266 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACA-CCCC
323 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCC
* * * *
12688330 CCGGCCCCCCCGATCGTCGGAACCTCAATGCCGTCAGTCAGGTTCTCCGGTGATGCTCCGGCGAT
388 CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT
* * * *
12688395 GGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCTC-AGCCTAGA-ATGTGCTACCGTAAC
452 GGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA-ACATGTGCTGCCGCAAC
*** * * * *
12688458 CCTCGGTCCAATCCAATCTTAGACTGGGAATGAACTCTGTCTGCTTAGAGTAGGAATGAACTCCG
516 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCG
* * *
12688523 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGGCCAGAGGGGCAGGATGCGT
581 TATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGTGCTCAG-CGGCCAGAGGGGCAGGATGCGC
* ** * *
12688588 AAGCCGGGGATCGATCGGGTCCCCCTCTGCATACTGCCGATCCTGCTGCCACAACGCTCAGTCTG
645 AAGCCGGGGATCGATCGGGTCCCCCTCT-CAT-CTG-CGATCCTACTG-CGTAACCCTCAGTCTA
** * *
12688653 GTCCAATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGC
706 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGC
* *
12688718 GGGC-G-GGCACTACGTCGGCCAAAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
771 GGGCGGAGGCACTACGTCAGCCAAAAAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
12688781 TGGGTTTAGGTACATCTTCATATTTCTGTGTGTCAATGCCATTTTTATGGCTTGTAAA
836 TGGGTTTAGGCACATCTTCAAATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
12688839 TTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
1 TTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
12688904 TCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCC
66 TCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCC
* * * * * *
12688969 CGAACCTTGGTAGATGTGATCCTTGAATTTGTTTTGGCATGGACAAAAATATTCAGCTAAAGACT
131 C-AAACTTGGTAGA-GTGATCCTTGAATTT-TTTTGGCATGCAAAAAAAAATTCAGCTAAAAAAT
*
12689034 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
193 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
12689099 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGA
258 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
12689164 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCACACATCATGTGCGCACACCCCC
323 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCC
* *
12689229 CCGGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGC-CCGGTGATG
388 CCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
* * * * *
12689293 GTGCCCCGATGAAGAAAAATACGGCACCAAGACATGCCCGAGCCCAACATGTGTTGTCGCAACCC
453 GTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAACATGTGCTGCCGCAACCC
* * **
12689358 TCGGTCTGGTCCGATCTTAGACAGGGAATGACCTCCATATGCTTAGACTGGGAATGAACTCCGTA
518 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTA
* * * *
12689423 AGCCTAAGTTAACCCATAG-AACGAACGTGCGGTTGCTCAGTCGGCCAGAGGGGCAGGATGCGCA
583 TGCCTAAGTCAACCCA-AGAAACGAGCGTGCGGGTGCTCAG-CGGCCAGAGGGGCAGGATGCGCA
* * * * *
12689487 AGCCGAGGATCGACCGGGTCCCCCTCTACATGCTGTCGATTCTACTGTCGTAACCCTCGGTCCAG
646 AGCCGGGGATCGATCGGGTCCCCCTCT-CAT-CTG-CGATCCTACTG-CGTAACCCTCAGTCTAG
* * *
12689552 TCTGATCTTAGATTAGGAATGAACTCCGTAT-CCTAAGCCAACCGATGAAACGAGCGGGTGGGCG
707 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCG
12689616 AGATGCACAA
Statistics
Matches: 1467, Mismatches: 181, Indels: 45
0.87 0.11 0.03
Matches are distributed among these distances:
889 170 0.12
890 350 0.24
891 74 0.05
892 2 0.00
895 1 0.00
896 10 0.01
897 374 0.25
898 404 0.28
899 10 0.01
901 72 0.05
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
TTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCC
CAAACTTGGTAGAGTGATCCTTGAATTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAAATCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCCG
GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCG
GTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCAAGAAACGAGCGTGCGGGTGCTCAGCGGCCAGAGGGGCAGGATGCGCAAGCCG
GGGATCGATCGGGTCCCCCTCTCATCTGCGATCCTACTGCGTAACCCTCAGTCTAGTCTGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGAGGC
ACTACGTCAGCCAAAAAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCAAATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAA
Found at i:12690401 original size:26 final size:26
Alignment explanation
Indices: 12690363--12690414 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12690353 CCAGTCTGAT
*
12690363 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
12690389 CTTAGA-TTGGGAATGAACTCCGTATG
1 CTTAGACTT-GGAATGAACTCCGTATG
12690415 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:12691645 original size:26 final size:26
Alignment explanation
Indices: 12691608--12691658 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12691598 CTGATCTGAT
12691608 CTTAGATAGGGAATGAACTCCGTATA
1 CTTAGATAGGGAATGAACTCCGTATA
*
12691634 CTTAGACT-GGGAATGAACTCTGTAT
1 CTTAGA-TAGGGAATGAACTCCGTAT
12691659 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATA
Found at i:12693144 original size:884 final size:886
Alignment explanation
Indices: 12690880--12698658 Score: 4834
Period size: 887 Copynumber: 8.6 Consensus size: 886
12690870 TGTGCTGCCA
* *
12690880 CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAA
* ** * *
12690945 AC-AGCGGGCGGGTAGGCACTACGTCGACCAGAGAGACTGGATGCGCAAGCCGTGGATCGATAGG
66 ACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
12691009 GTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
131 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
* *
12691074 ATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
196 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * * *
12691139 TTAATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGAC
261 TTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
*
12691204 CCCAAACTTGGTAGAT-GTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAA
326 CCCAAACTTGGTAG-TCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
12691268 CTCGAAGTCTACAAGATTTTGTGACAATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGC
390 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
12691333 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGCGGTGTGAGTTCTCGTGGTTTGAT
455 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
*
12691398 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG--CACCC
520 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * *
12691461 CCCCGGCCCGCCCGATCG-CTAGAACCCCAATGCCACCGGTTAGGTTCTCCGACGATGCTCCGAC
585 CCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGATCAGGTTCT-C--CGA-GCT-----
* * * ** * *
12691525 GATGGT-CCCCGGCGAAGAAAAATGCGGCACCAACATATGCCCGAGCCCAGCACATGCTGTCGTA
640 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * * *
12691589 ACCCTCGGTCTGATCTGATCTTAGATAGGGAATGAACTCCGTATACTTAGACTGGGAATGAACTC
705 ACCCTCGGTCCGATCCGATCTTAGA-CGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
* * * ** * *
12691654 TGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAGCGGGCCAGAGGGGCGGGATGC
769 CGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * ** * *
12691719 GCAAGCCAAGGATCGG-CCGGTCCC-CTCTGCGTGCTGTTGATCCTACTGCTG
834 ACAAGCCAGGGATCGGTCGGGTCCCACTCTGCGTGCTGCCGATCCTGCTCCTG
* * * * *
12691770 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTTCTTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAA
* ** * *
12691835 A----CGAGCGGGCGAACACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGCATCGATAGG
66 ACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
12691896 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
131 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
* * * * * *
12691961 ATTCTTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATTGCAAGATGACTTGTTTTCTATTT
196 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * * *
12692026 TTCACGATTTTTGAAACTTTTTGCGGTTCGGGAGTTTTTAAAATTTTTTCGGAAGGCGTTTTGGC
261 TTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
* * * * * *
12692091 CCCAAACTTGGTAGACATGAACCTTTTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAATC
326 CCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * **
12692156 TAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAATGCTTTAATGGCT
391 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
12692221 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATG
456 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
12692286 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
521 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * *
12692351 CCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTCGATCAGGTTCTCCG-G-TGATGGTGCCTC
586 CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAGCTGATGGTGCCCC
* * * *
12692414 AACGAAGAAAAATGTGGCACTAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
651 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
12692479 GATCCGATCTTAGACGAGGAACGAACTCTATATGCTTAGAATGGGAATGAACTCCGTATGCCTAA
716 GATCCGATCTTAGACG-GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** *
12692544 GTCAACCCACGAAACGAACGTACGGGTGCTCAGCCTGCCAGAGGGGCGGGATGGGCTAGCCAGGG
780 GTCAACCCACGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAGGG
*
12692609 ATCGGTCGGGTCCCACTCTGCGTGTTGCCGATCCTGCTCCTG
845 ATCGGTCGGGTCCCACTCTGCGTGCTGCCGATCCTGCTCCTG
* * * * *
12692651 CAACCCTCTGTCCGGTCCCATCTTAGACTGGGAATGAACTTCGTATGCCTGAGCAAACCTACAAA
1 CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAA
* * * * * * *
12692716 ACGGGCAGACGGGCGAGCACTACGCCGACCAGAGATACGGGATGCACAAGCCGTGGATCGATAGG
66 ACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
12692781 GTGGTAAGTGGGTTTAGGCACATCTTAATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
131 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
*
12692846 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTCTATTT
196 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* ** * *
12692911 TTCACGATTTTCAAAAC-TTTTAAGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGC
261 TTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
*
12692975 CCCAAACTTGGTAGTCTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
326 CCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * **
12693040 TCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAGGCTTTAATGGCT
391 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
12693105 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATG
456 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
12693169 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACGCA
521 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * *
12693234 CCCGGCCCCCCCGATCGCCGGAAGCCTAATGCCGCC-AGTCAGGTTCTCCGACGATTGCTCGCGA
586 CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGA-TCAGGTTCT-C--CGA------GC--
* *
12693298 TCCAGCGATGGTGCCCCGACGAAG-AAAATGTGGACACCAGCACATGCTCGAGCCCAGCATGTGC
639 T-----GATGGTGCCCCGACGAAGAAAAATGCGG-CACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
12693362 TGCCACAACCCTCGGTCTGGTTCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAA
698 TGCCGCAACCCTCGGTCCGATCCGATCTTAGA-CGGGAATGAACTCTGTATGCTTAGACTGGGAA
* * * * * * *
12693427 TGAATTTCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCACCCAGCCAGA-GGGC
762 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGC
* * * * *
12693491 -GGATACGCAAGTCAGGGATCGGTCGGGT--CA------------CC-ATCCTGCTACAG
827 GGGATGCACAAGCCAGGGATCGGTCGGGTCCCACTCTGCGTGCTGCCGATCCTGCTCCTG
* ** * * * * *
12693535 CAACCCTCGGTCCTATCCAATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACTGACGAA
1 CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGAC-AA
* * * **
12693600 ACGATCGGGCAGGCGGGTGGGCACTACGCCGGTAAGAGAGGACGGGATGCGCAAGCCGTTGGATC
65 A--A-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGA-GACGGGATGCGCAAGCCG-TGGATC
* * *
12693665 GATACGGTGGTAGGTGGGTTTAGGCA-ATCTTCATATTTCATACGTGCCCAATGCCATTTTTGTG
125 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-TACATG-CCAATGCCATTTTTATG
* *
12693729 GCCCTGCTAAA-TCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAG-CGACTCG
188 G-CTTG-TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *** ***
12693792 TTTCTCTATTTTTCACGATTTTTGAAAC-TTTTAGGGTTCGAGATGTTTTGGTGGCA--TGCAC-
251 TTT-TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGAT-TTTT--TAAAATTTTTTCG
* ** * *** * ** ** *
12693853 AAA-AACCTTTAGCTAAAAAC-T--CA-AAGTGA--CAAG-A-TTTTG-TGACCATTTG-A-AAA
312 AAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTG-GCA--TGCACAAA
* * * ** * **** ** *
12693906 AATATGTCCCCATGC-AGACACTTTAA-TGGCTAC-TG-GCCAGCAAACC-TGT-AAAATCTCAA
374 AAAAT-T---CA-GCTAAAAACTCGAAGT-G-TACAAGATTTTG-TGACCATTTGAAAA----AA
* *** * * *** * * ** * * *
12693965 ATGCTCTTTAAGTTCTTGA-GGGTTGATGAGGGTCAGGGGCCGCCAA--TATAAGGGCCAA-CTA
427 GTG-TC-CCCATTTC-AGACACTTTAAT--GGCT-ACTGGCAGCAAACCTGTAA-----AATCT-
* * * * * * *** *** ******* ** * ***
12694026 CCAGCACCCATCGCACATCATGTGCG-CACACCCCTTCG-GCCCCCCCGATCGCT-GGAACCCCA
480 -CA--A---AT-GCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGG-GGGCCA
* ** * * * * * * * * ****** *
12694088 ATACCACTGGTCAGGTTCTCCG-A-CGAT-GCTCCAACGATGGTGCCCCGACGAAGAAAAATACA
536 ATA-TAAGGGCCAAGTAC-CAGCACCCATCGC-ACATC-AT-GTG---CG-C--ACACCCCCCCG
* * * * * * *** * * **
12694150 GCACCAGCAC-AT-GCTC-GAGTCCAGCATGTGCTGCC-A-CAACCCTCGGTCCGATCCGATTTT
590 GC-CC-CCCCGATCG-TCGGA-ACC-CCA-ATGCCGCCGATC-AGGTTC--TCCGAGCTGATGGT
* * * * * ** * * * * **
12694210 AG-ACTGA-AAATGAACTCCATATGCTTAG-ACTGGGA-AT----GAACTCC-GTATG-CCT-AA
646 -GCCCCGACGAA-GAA----AAATGC--GGCACCAGCACATGCCCGAGC-CCAGCATGTGCTGCC
* *** * * * * ** *** * * ** *
12694264 GTCAACCCACGAAACGAGCGTGCAGGTGCTCAG-CTAGCCA-GAGGGGCGGGATGCGCA-AGTCG
702 G-CAACCCTCGGTCCGA---T-CCGAT-CTTAGAC-GGGAATGA-ACTCTGTATGCTTAGACT-G
* * ** * * * * * * *
12694326 GGGATCG-GCTGGGTCCCCATCCTGCTATCG-CAACCCTCGGTCCGATCTGATCTTAGACTGGG-
758 GGAAT-GAAC----TCCGTATGC--CTA-AGTCAACCCAC-G---AAAC-GAACGT--AC-GGGC
** * * * * * * * ** *
12694388 AATGAACTCCG-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATTAG
807 GCTCAGC-CGGCCA------GA--GGG---G----CGGGATG-C--A--CAAGCCA-GGGA-TCG
* * * ** ** * *** * **
12694452 TGTGCGGGTGCTCAGTCGGCCAGGGGGCG-GGATGCACAAG
849 -GT-CGGGT-CCCACTCTGCGTGCTGCCGATCCTGCTCCTG
**** * * * * * * * *
12694492 TCAGGGATC-GGCCGGGTCC-ACCTCTACGTGCTGCCGATCCTG--CTGTCGTA-ACACTCGATC
1 -CAACCCTCAGTCC-GGTCCGATCT-TA-G-ACTG-GGA--ATGAACT-TCGTATGC-CT-AAGC
** * * * * *** ** ** * * ** * *
12694552 CAGTTCTATCTTAGACTGG-GAATGAACTCTGTA-TACCTAAGCCAACCGACGAAACGAGTAGGT
55 CA-ACCGA-C-AAAACGGGCGGGCGGGC-GGGCACTACGTCGGCC-A--GA-GAGACG-G--GAT
* * * * * * ** * * **
12694615 GGGC-GGACGGGTGGGCACTACG-TCGGCCAGAGAGACAGGAT--GCATAAGC-CGTGGATCGAT
109 GCGCAAG-C-CGT-GG-A-T-CGATAGG---GTG-G-TAGG-TGGGTTTAGGCACAT-CTTC-AT
* ** ** *** * * * * ** * ** *
12694675 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTATTATGG--CT
160 A--TTTCTACAT--GCCAATGC-CAT-TT--T-TAT-GGCTTGTAAAT-TCA-TACAATGGTCCC
* * * * * *** * **** * **
12694738 TGTAAATTCATACAATGCTC-CCTTAAGCCTTCACGTG-AA-ATTTCATGGCAAGACGACTCGTT
213 T-T-AA-GC---C--T--TCACGTGAAG-TTTCATG-GCAAGACGAC-TCG-TTTTCTA-TTTTT
* * * *
12694800 C-TCTATTTTTCATAATTTTTGAAAC-TTTTACGATTTGAGATTTTTTAAAATTTTTTCGATAGG
263 CAT-GA-TTTT---------TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG
* * * *
12694863 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCGCAAAAAACTTCA
317 AGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
12694928 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
382 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * *
12694993 TTTATGGCTATTGGCAGCAAAGCTGTAAAATCTCAAATGCTCATTAA-GGGGTGTGAGTACTCGA
447 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
12695057 GGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGGACCCATCGCACATCATGTGC
512 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
12695122 GCACACACCCCCCTGG-CCCCTCG-TCG-CCGAACCCCAATACTGCCCGATCAGGTT-TCGGCGA
577 GCACAC-CCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCG-CCGATCAGGTTCTC--CGA
* * * * *
12695183 TGTTCCG-TACGTGCCCCGACG-AGAAAAATGCAGCACCAACACATGCCTTTGAGCCCAGCATGT
637 -G--CTGAT-GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC--CGAGCCCAGCATGT
* ** * * * * *
12695246 GCTACCATAACCC-CAGTCACCGGTGCTGATCTTA-ACTGGAATGAACTCTGTATGCTTTGA-TG
696 GCTGCCGCAACCCTCGGT--CCGAT-CCGATCTTAGACGGGAATGAACTCTGTATGCTTAGACTG
* * * * * *
12695308 GGAATGAACTCCGCATGCCTAAGTCAACCCATGAAA-TAATCAGTGATCGGGCACTCAGTCAGCC
758 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAA-C-GT-A-CGGGCGCTCAGCCGGCC
* * * * **
12695372 AGA-GGGC-GGATGCAC-AGTCAGAGGATCGGCCGAGTCCC-CTCTGCGGGCTGTTGATCCT-CT
819 AGAGGGGCGGGATGCACAAGCCAG-GGATCGGTCGGGTCCCACTCTGCGTGCTGCCGATCCTGCT
12695432 ACC--
883 -CCTG
* * * * * * *
12695435 AAACCCTTA-TCCAGTCC-ATC-TA-ACTTGAAATGAACTTCGTATGCCTAAGCCAAACTGACGA
1 CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC-AACCGACAA
* * * *
12695496 CACGAGCAGGG-GGCATGCATGCGTGCACTATGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGG
65 AACGGGC-GGGCGG---GC--G-G-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * *
12695560 ATCGATAAGAT-GTATGTGGGTTTA-G-ACATCGTCATATTTTGCCTAC-CGCCAATGCCA-TTT
122 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTT--CTACATGCCAATGCCATTTT
12695620 TATGGCTTGGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT-AAGTTTCAT-GCAAGACGAC
184 TATGGCTT-GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** * * *
12695683 TCGTTTTCT-TTTTTCATGATTTTCAAAACTTTTTACTGTTCG-GATTTTTTAAAA-TTTTTAGG
248 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA
* *
12695745 AAGGAGTTTTGACCCCAAACCTT--TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
313 AAGGAGTTTTGGCCCCAAA-CTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
12695808 ATTCAGCTAAAATCTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAATATCCCCATTTCAG
377 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
12695873 ACACTATAATAGCTACTGGCAGC-AA-CTATAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTT
442 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
12695936 ATCGAGGTTTGAATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG--CATC
507 CTCGAGGTTTG-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
12695998 ATATGCG--CA-CCCCCTGGCCCCCCTGATCGTCGGAACCCTAATGCCGCCGGGTCAGGTTCTTC
571 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCC-GATCAGGTTC-TC
* * * * *
12696060 GGTGATGCTCCGACGATGTGGCCCGACG-A-ACAAATGCTCGCACCAGCA-ATGCCC-ATGCCCA
634 --CGA-GCT--GATG--GTGCCCCGACGAAGAAAAATGC-GGCACCAGCACATGCCCGA-GCCCA
*
12696121 GCATGTGCTACCGCAA-CC-C--T-CG----G-TC-----C--G---G---TCTG-AT-CTTAGA
690 GCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACGGGAATGAACTCTGTATGCTTAGA
* * * **
12696161 CTAGGAATGAACTCCGTATGACTAAGTCAACCCCCGAAAC-AAGCGTACGGGCGCTCAGTAGGCC
755 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAA-CGTACGGGCGCTCAGCCGGCC
* * * * * * * * *
12696225 AGAGGGGC-AGATGCACAAGCCGGGGATCGGTCGGTTCCCCCTCTACATGCTACCGATCTTGCTG
819 AGAGGGGCGGGATGCACAAGCCAGGGATCGGTCGGGTCCCACTCTGCGTGCTGCCGATCCTGCTC
12696289 CTG
884 CTG
* * *
12696292 CAACCCTC-GATCCGGT-CTATCTTAGACT-GGAATGGAACTCCGTATGCCTAAGCCAACCAACG
1 CAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAAT-GAACTTCGTATGCCTAAGCCAACCGAC-
* * *
12696354 AAACGAGCGGGCGGGCGGCGAAGCGGGCACTTCGATCGGCCAGACAGATGGGATGCGCAAGCCGT
63 AAA--A-CGGGCGGGC-G-G--GCGGGCACTACG-TCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * ***
12696419 GGATCGATAGAGGTGGTAGGTGGCTTTTATGCACATCTTCATATTTCTGTGTGCCAATGCCA-TT
120 GGATCGATAG-GGTGGTAGGTGG-GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* * * *
12696483 TTATGGC-TGTAAATTCATACAATGGTCCTTTAAAGCCCTTCACATTAAGTTTCATCGCAAGACG
183 TTATGGCTTGTAAATTCATACAATGGTCCCTT-AAG-CCTTCACGTGAAGTTTCATGGCAAGACG
* * *
12696547 ACTCTGTTTTTCTTATTTTTCATGATTTTCG-AACTTTTTACAGTTTCGGGA-TTTTTAAAATTT
246 ACTC-G-TTTTC-TATTTTTCATGATTTTTGAAACTTTTTAC-GGTTCGAGATTTTTTAAAA-TT
*
12696610 TTTTCGAAAGGAGTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTGTTGGCATGC
306 TTTTCGAAAGGAG-TTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTA-TTTTTGTTGGCATGC
* * *
12696675 ATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTAGAAAAAA-TGTCCC
369 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CC
*
12696739 CCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTAGTAAAATTCTCAAATGCTCTTTTAAG
433 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT-GTAAAA-TCTCAAATGCTC-TTTAAG
* * *
12696804 AGGGTGTGGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCAC
495 GGGGTGT-GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * ** * *
12696869 CCATCGCGCATCATGTACGCACA-CCCCCCGACCCCCTCGATCACCGGAACCCTAATGCCGCCGG
559 CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGA
*** *
12696933 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTAAAGAAAAATGTGGCACCAGCACATG
624 TCAGGTTCT-C--CGA-GCT-----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * *
12696998 CCCGAGCCAAGCATGTGCTACCGCAACCCTCGATCC-AGTCCGATCTTAGACTGGGAATGAACTC
680 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGAC-GGGAATGAACTC
* * ** * * *
12697062 CGTATACTTAGACTGGGAATGAACAACATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
743 TGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGCG
*** * * * * *
12697127 CTCAATTGGCTAGAGGGGTGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGC
808 CTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCGGTCGGGTCCCACTCTGCGTGCTGC
* * *
12697192 CAATCCTACTGCC-A
873 CGATCCTGCT-CCTG
* * *
12697206 CAACCCTCAGTCCGAGTCAGATCTTAGACTGGGAATGAAC-TCTGTATACCTAAGCCAACCGACG
1 CAACCCTCAGTCCG-GTCCGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACA
* * * * *
12697270 AAATGAGCGGGCGGGCGTGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGAT-GATA
64 AAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*** * **
12697334 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCGATTTTTATCACTTGT
129 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
* * * *
12697399 AAATTCATGCAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAGGACAACTCGTTTTCTAT
194 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* *
12697464 TTTTCACGA-TTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
259 TTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTT
*
12697527 AGCCCCAAACTTGGTAGAT-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
323 GGCCCCAAACTTGGTAG-TCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
12697591 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAAT
387 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
12697656 GGCTACTGGCAGCGAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
452 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
** *
12697721 GATGAGGGATAACGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
517 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-
* * * * *
12697786 ACCCCCCC-GTCCCCCCGATCATCGGAACCTCAATGTCGCCGGTCAGGTTCTCCGGTGATGCTCT
581 ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCC---GA-G--CT
* *
12697850 GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCGAACACATGCCCGAGCCCAGGATGTGCTGC
640 ---GATGGTGCCCCGACGAAGAAAAATGCGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * * *
12697915 CGCAACCCTTGGTTCGATCAGATCTTAGGCTGGGAATGAACTCCGTATCCTTAGACTGGGAATGA
701 CGCAACCCTCGGTCCGATCCGATCTTAGAC-GGGAATGAACTCTGTATGCTTAGACTGGGAATGA
* * * * * *
12697980 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGGCCAGAGGGCCGGG
765 ACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * * * *
12698045 ATGCACAAGCCGGGGATCAGTCGGG-CCCCCTCTGATAGTGCTACTGGAGTCCTACGTGCCATA
830 ATGCACAAGCCAGGGATCGGTCGGGTCCCACTCTG--CGTGCTGC-CGA-TCCTGC-T-CC-TG
* * * *
12698108 CAACCCTCAGTCTGGTCTGATCTTAGACTGGAAATGAAC-TCAGTATGCCTAAGCCAACCGACGA
1 CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACAA
* * * * * *
12698172 AACGAGTGGGCGGGCGGGCACTACG-CTGGCTAGAGAGACTGGATGCGTAAGCCATGGATCGATA
65 AACGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
**
12698236 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATCACTTGT
129 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
* * * * *
12698301 AAATTCATCCAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGTAGGACCACTCGTTTTTTCT
194 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG--TTTTCT
*
12698366 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTC-AGAAGGAGTT
257 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA-AAGGAGTT
12698430 TTGGCCCCAAACTTGGTAGAT-GTGATCCTTGTATTTTTGTTGGGCATGCAC-AAAAAATTCAGC
321 TTGGCCCCAAACTTGGTAG-TCGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGC
* *
12698493 TAAAAACTCGAAGTATA-AAGATTGTGTAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
384 TAAAAACTCGAAGTGTACAAGATTTTGT-GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
12698557 TAATGGCT-TTGG-TGCGAACCTGTAAAATCTCAAATG-TC-TTAAGGGGTGTGTGAG-GCTCGA
448 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTGAGTTCTCGA
*
12698617 CCGGTTTGAT-AGGGATA-GGGGCCAATAGAAGGGCCAAGTACC
512 --GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
12698659 NNNNNNNNNN
Statistics
Matches: 5351, Mismatches: 1028, Indels: 1009
0.72 0.14 0.14
Matches are distributed among these distances:
853 17 0.00
854 25 0.00
855 25 0.00
856 40 0.01
857 11 0.00
858 8 0.00
859 11 0.00
860 30 0.01
861 37 0.01
862 29 0.01
863 18 0.00
864 35 0.01
865 15 0.00
866 22 0.00
867 1 0.00
868 5 0.00
869 13 0.00
870 29 0.01
871 2 0.00
872 15 0.00
873 12 0.00
874 19 0.00
875 101 0.02
876 2 0.00
877 4 0.00
878 23 0.00
879 188 0.04
880 56 0.01
881 148 0.03
882 22 0.00
883 186 0.03
884 357 0.07
885 366 0.07
886 41 0.01
887 533 0.10
888 46 0.01
889 77 0.01
890 100 0.02
891 47 0.01
892 94 0.02
893 14 0.00
894 80 0.01
895 94 0.02
896 186 0.03
897 26 0.00
898 111 0.02
899 80 0.01
900 62 0.01
901 320 0.06
902 164 0.03
903 55 0.01
904 122 0.02
905 206 0.04
906 43 0.01
907 37 0.01
908 11 0.00
909 12 0.00
910 12 0.00
911 10 0.00
912 26 0.00
913 78 0.01
914 69 0.01
915 17 0.00
916 39 0.01
917 12 0.00
918 4 0.00
919 1 0.00
920 3 0.00
921 5 0.00
922 7 0.00
923 4 0.00
925 2 0.00
927 2 0.00
928 4 0.00
929 1 0.00
930 2 0.00
931 6 0.00
932 9 0.00
933 11 0.00
934 10 0.00
935 10 0.00
936 5 0.00
938 8 0.00
939 9 0.00
940 2 0.00
941 8 0.00
942 9 0.00
944 8 0.00
945 6 0.00
946 4 0.00
947 1 0.00
948 3 0.00
949 4 0.00
950 1 0.00
952 1 0.00
954 1 0.00
955 4 0.00
956 1 0.00
957 12 0.00
958 9 0.00
959 1 0.00
960 3 0.00
961 11 0.00
962 12 0.00
963 9 0.00
964 6 0.00
965 5 0.00
966 3 0.00
967 7 0.00
968 3 0.00
969 1 0.00
970 4 0.00
971 10 0.00
972 7 0.00
973 2 0.00
974 7 0.00
975 7 0.00
976 13 0.00
977 4 0.00
978 13 0.00
979 7 0.00
980 11 0.00
981 5 0.00
982 16 0.00
983 22 0.00
984 22 0.00
985 28 0.01
986 10 0.00
987 9 0.00
988 4 0.00
989 1 0.00
991 6 0.00
992 22 0.00
993 36 0.01
994 11 0.00
995 5 0.00
996 4 0.00
997 1 0.00
999 2 0.00
1000 2 0.00
1001 2 0.00
1002 2 0.00
1003 8 0.00
1004 9 0.00
1005 27 0.01
1006 18 0.00
1007 3 0.00
1008 4 0.00
1009 6 0.00
1010 19 0.00
1011 4 0.00
1012 8 0.00
1013 2 0.00
1014 12 0.00
1015 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAA
ACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
CCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAGCTGATGGTGCCCC
GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
GATCCGATCTTAGACGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAGGGA
TCGGTCGGGTCCCACTCTGCGTGCTGCCGATCCTGCTCCTG
Found at i:12694247 original size:26 final size:26
Alignment explanation
Indices: 12694208--12694259 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12694198 CGATCCGATT
12694208 TTAGACTGAAAATGAACTCCATATGC
1 TTAGACTGAAAATGAACTCCATATGC
** *
12694234 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGAAAATGAACTCCATATGC
12694260 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
TTAGACTGAAAATGAACTCCATATGC
Found at i:12694406 original size:26 final size:26
Alignment explanation
Indices: 12694377--12694429 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12694367 CCGATCTGAT
12694377 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12694403 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12694429 C
1 C
12694430 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12697977 original size:896 final size:890
Alignment explanation
Indices: 12696155--12698658 Score: 3121
Period size: 905 Copynumber: 2.8 Consensus size: 890
12696145 CCGGTCTGAT
* * * *
12696155 CTTAGACTAGGAATGAACTCCGTATGACTAAGTCAACCCCCGAAACAAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
* ** * * * * *
12696220 AGGCCAGAGGGGCAGATGCACAAGCCGGGGATCGGTCGGTTCCCCCTCTACATGCTACCGATCTT
66 CGGCCAGAGGGGGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* ** * *
12696285 GCTGCTGCAACCCTC-GATCCG-GTCTATCTTAGACT-GGAATGGAACTCCGTATGCCTAAGCCA
131 ACTGCCACAACCCTCAG-TCCGAGTCGATCTTAGACTGGGAAT-GAACTCTGTATGCCTAAGCCA
* * * * *
12696347 ACCAACGAAACGAGCGGGCGGGCGGCGAAGCGGGCACTTCGATCGGCCAGACAGATGGGATGCGC
194 ACCGACGAAACGA----GCGGGC-G-G--GCGTGCACTACG-TCGGCCAGAGAGACGGGATGCGC
* * *
12696412 AAGCCGTGGATCGATAGAGGTGGTAGGTGGCTTTTATGCACATCTTCATATTTCTGTGTGCCAAT
250 AAGCCGTGGATCGATAG-GGTGGTAGGTGG-GTTTAGGCACATCTTCATATTTCTGTATGCCAAT
* * * *
12696477 GCCA-TTTTATGGC-TGTAAATTCATACAATGGTCCTTTAAAGCCCTTCACATTAAGTTTCATCG
313 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AAG-CCTTCACGTAAAGTTTCATGG
* *
12696540 CAAGACGACTCTGTTTTTCTTATTTTTCATGATTTTCG-AACTTTTTACAGTTTCGGGA-TTTTT
376 CAAGACGACTC-G-TTTTC-TATTTTTCATGATTTT-GAAACTTTTTAC-GGTTCAGGATTTTTT
*
12696603 AAAATTTTTTTCGAAAGGAGTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTGTT
436 AAAA-TTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTT
* * *
12696668 GGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTAGAAAAAA
498 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
12696733 -TGTCCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTAGTAAAATTCTCAAATGCTC
563 GTGT-CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT-GTAAAA-TCTCAAATGCTC
* * *
12696797 TTTTAAGAGGGTGTGGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
625 -TTTAAGGGGGTGT-GAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTA
* * * * *
12696862 CTAGCACCCATCGCGCATCATGTACGCACACCCCCCGACCCCCTCGATCACCGGAACCCTAATGC
688 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCATCGGAACCCTAATGC
* * *
12696927 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTA-AAGAAAAATGTGGCACCA
752 CGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-G-ACGAGAAAAATGCGGCACCA
* * * * *
12696991 GCACATGCCCGAGCCAAGCATGTGCTACCGCAACCCTC-GATCCAGTCCGATCTTAGACTGGGAA
815 ACACATGCCCGAGCCCAGCATGTGCTACCGCAACCC-CGGTTCGA-TCTGATCTTAGACTGGGAA
*
12697055 TGAACTCCGTATA
878 TGAACTCCGTATG
** * * *
12697068 CTTAGACTGGGAATGAACAACATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
* * * *
12697133 TGGCTAGAGGGGTGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCC
66 CGGCCAGAGGGG-GGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
*
12697198 TACTGCCACAACCCTCAGTCCGAGTCAGATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCA
130 TACTGCCACAACCCTCAGTCCGAGTC-GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* * *
12697263 ACCGACGAAATGAGCGGGCGGGCGTGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGG
194 ACCGACGAAACGAGCGGGCGGGCGTGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
12697328 AT-GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCGATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTAT
** * * *
12697392 CACTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAGGACAACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGT
*
12697457 TTTCTATTTTTCACGATTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGA
389 TTTCTATTTTTCATGATTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGA
* *
12697522 GTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
454 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
12697587 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTT
519 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
12697652 TAATGGCTACTGGCAGCGAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
584 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
12697717 GTTTGATGAGGGATAACGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
649 GTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
12697782 CACAACCCCCCCGTCCCCCCGATCATCGGAA-CCTCAATGTCGCCGGTCAGGTTCTCCGGTGATG
714 CAC-A-CCCCCCGGCCCCCCGATCATCGGAACCCT-AATGCCGCCGGTCAGGTTCTCCGGCGATG
* * *
12697846 CTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCGAACACATGCCCGAGCCCAGGATGTG
776 CTCCGACGATGGTGCCCCGACG-AGAAAAATGCGGCACC-AACACATGCCCGAGCCCAGCATGTG
* * * * *
12697911 CTGCCGCAACCCTTGGTTCGATCAGATCTTAGGCTGGGAATGAACTCCGTATC
839 CTACCGCAACCC-CGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
12697964 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
* * * * *
12698029 CGGCCAGAGGGCCGGGATGCACAAGCCGGGGATCAGTCGGG-CCCCCTCTGATAGTGCTACTGGA
66 CGGCCAGAGGG-GGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTG--CGTGCTGC-CGA
* * *
12698093 GTCCTACGTGCCATACAACCCTCAGTCTG-GTCTGATCTTAGACTGGAAATGAACTCAGTATGCC
127 -TCCTAC-TGCC--ACAACCCTCAGTCCGAGTC-GATCTTAGACTGGGAATGAACTCTGTATGCC
* * * * *
12698157 TAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCACTACG-CTGGCTAGAGAGACTGGATGCGTA
187 TAAGCCAACCGACGAAACGAGCGGGCGGGCGTGCACTACGTC-GGCCAGAGAGACGGGATGCGCA
* **
12698221 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
251 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCC
** * * * * *
12698286 ATTTTTATCACTTGTAAATTCATCCAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGTAGGA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGA
* *
12698351 CCACTCGTTTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTT
381 CGACTCG--TTTTCTATTTTTCATGA-TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTT
* *
12698416 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGGCATGCAC
443 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCAC
* *
12698481 -AAAAAATTCAGCTAAAAACTCGAAGTATA-AAGATTGTGTAGACCATTTGAAAAAAGTGTCCCC
507 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT-GACCATTTGAAAAAAGTGTCCCC
* * *
12698544 ATTTCAGACACTTTAATGGCT-TTGG-TGCGAACCTGTAAAATCTCAAATG-TC-TTAAGGGGTG
571 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-G
* *
12698605 TGTGAG-GCTCGACCGGTTTGAT-AGGGAT-AGGGGCCAATAGAAGGGCCAAGTACC
635 TGTGAGTTCTCGA--GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACC
12698659 NNNNNNNNNN
Statistics
Matches: 1419, Mismatches: 137, Indels: 82
0.87 0.08 0.05
Matches are distributed among these distances:
893 1 0.00
894 75 0.05
895 90 0.06
896 181 0.13
897 16 0.01
898 108 0.08
899 42 0.03
900 27 0.02
901 165 0.12
902 151 0.11
903 31 0.02
904 90 0.06
905 183 0.13
906 36 0.03
907 30 0.02
908 10 0.01
910 1 0.00
911 1 0.00
912 6 0.00
913 66 0.05
914 60 0.04
915 4 0.00
916 40 0.03
917 5 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (890 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
CGGCCAGAGGGGGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
ACTGCCACAACCCTCAGTCCGAGTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGTGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCCGATCATCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG
ACGATGGTGCCCCGACGAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGC
AACCCCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:12700918 original size:26 final size:26
Alignment explanation
Indices: 12700888--12700940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12700878 GTTGACTTAG
*
12700888 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12700914 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12700940 G
1 G
12700941 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12701794 original size:902 final size:899
Alignment explanation
Indices: 12700048--12702447 Score: 3507
Period size: 902 Copynumber: 2.7 Consensus size: 899
12700038 CTAAGATCGA
* * * * * * *
12700048 ACCGAGGGTTACGACTGCACATGCTGGGCTCGAGCATGAGTTGGTACCACATTTTTCTTCAAT-G
1 ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ATCG
* * * *
12700112 GGGCACCATCGCTGGAGCATCGCCAGAGAACCTGA-TCGACGGCATTAGGGTTCCGACGATCGAG
65 GGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACT-GGCGGCATTGGGGTTCCGACGATCGGG
* * *
12700176 GGGGCCAGGGGTGGTGTGCGCACATGATATGCGATGGGTACTGGTACTTGGCCCCTATATTGGCC
129 GGGGCC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCC
*
12700241 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
192 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
12700306 TGCTGCCAGTAGCCATTAAAGTCTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTT
257 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
12700371 TACACTTTGAGTTTTTAGCTGAA-TTGTTTGTGCATGCCAACAAAAATACAAGGATCAAGACTAC
322 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * **
12700435 CAAGTTTGGGGCTAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCA-CAAAAGTTTTGA
387 CAAGTTT-GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAA
* *
12700499 AAATCGTGAAAAATAGAAAATGAGGCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCA
451 AAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
12700564 TTCTATGAATTTACAAGCCATAAAAATGGCATTGG-A-ATGCAGAAATATGAAGATGTGCCGAAA
516 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT--AGAAATATGAAGATGTGCCAAAA
* * *
12700627 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTGGCCGGCGTAGCGCTCGC
579 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATATCTCTAGCCGGCATA-CGCTCGC
* * * *
12700692 CCGTCTGCTCGGCCACTCGTTTCGTGGGTTGGCTTAGGCATACGTAGTTCATTCCCAATCTAAGA
643 CCGTCTGCCCGGCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGA
* * * *
12700757 TCAGACCGGACCAAGGGTTACGGTAGCGGGATCAACAGCACATAGAGGGGGACACAACCGATCCC
708 CCAGACCAGACCAAGGGTTA--GTAGCAGGATCAACAGCACACAGAGGGGGACACAACCGATCCC
* **
12700822 CGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTA
771 CAGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTA
* **
12700887 GGCATACGGAGTTCATTTCC-AGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGATTGG
836 GGCATACGGAGTTCA-TTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * *
12700951 ATCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGG
1 ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
* *
12701016 GGCACCATCGCCAGAGCATCGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGG
66 GGCACCATCGCCGGAGCATCGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGG
* * *
12701081 GGCCGGGTGGGAGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCC
131 GGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCC
* *
12701146 TATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCAATTGAGATTTTACAGGTTTGC
195 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
12701211 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTAC
260 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
** * * * *
12701276 ACTTCGAGTTTCAAGTTGAATTTTTTTGTGCATGCCAACAAGAATACAAGGATCACGTTTACCAG
325 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
12701341 GTTTGGGCCAAAACTCCTTACGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAAT
390 GTTTGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAAT
* *
12701406 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
455 CGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
12701471 ATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTG-CAAAACCCACC
520 ATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCAAAACCCACC
* * *
12701535 TACCACCCTATCTATCCACGGCTTGCGCATCTCATCTCTCTAGCCGGCATA-G-T-GCCCGTCTG
585 TACCACCCTATCGATCCACGGCTTGCGCATCCCATATCTCTAGCCGGCATACGCTCGCCCGTCTG
** *
12701597 CCCGCCCGCGTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCA
650 CCCG---GC-CACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGACCA
** ** * * * *
12701662 GGACCAGACTGAGGGTT-GTCAAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTA
711 -GACCAGACCAAGGGTTAGT--AGCAGGATCAACAGCACACAGAGGGGGACACAACCGATCCCCA
* * * *
12701726 GCTTGTGCATCCCACCCTTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
773 GCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGG
*
12701791 CATACGGAGTTCATTCCTGGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
838 CATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* *
12701853 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTT-AGTCG
1 ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-TCG
* * * * *
12701917 GGGCACCATCACCGGAGCATTCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGG
65 GGGCACCATCGCCGGAGCA-TCGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGG
* *
12701982 GGGGCCAGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCATATATTGGCCCC
129 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCC
*
12702047 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
194 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
12702112 CTGCCAGTAGCCATTAAAGTGTTTTAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTA
259 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
12702177 CACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAACAAAAATAAAAGGATCACGTCTACCA
324 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
*
12702242 AGTTTGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCTCGAA--ATGCAAAAAGTTTCAAA
389 AGTTTGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCAT--AAAAAGTTTCAAA
12702305 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
452 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* ** * *
12702370 TGTATTAATTTACAAGCCATAAAAATATCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
517 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCAAAACCC
12702435 ACCTACCACCCTA
582 ACCTACCACCCTA
12702448 AGATCGGACC
Statistics
Matches: 1348, Mismatches: 129, Indels: 40
0.89 0.09 0.03
Matches are distributed among these distances:
898 12 0.01
899 1 0.00
900 5 0.00
901 7 0.01
902 961 0.71
903 358 0.27
904 2 0.00
905 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (899 bp):
ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
GGCACCATCGCCGGAGCATCGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGG
GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATC
GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCAAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCATATCTCTAGCCGGCATACGCTCGCCCGTCTGC
CCGGCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGACCAGACCA
GACCAAGGGTTAGTAGCAGGATCAACAGCACACAGAGGGGGACACAACCGATCCCCAGCTTGCGC
ATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGA
GTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
Found at i:12701826 original size:26 final size:26
Alignment explanation
Indices: 12701790--12701842 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12701780 GTTGACTTAG
**
12701790 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12701816 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12701842 G
1 G
12701843 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12704206 original size:26 final size:26
Alignment explanation
Indices: 12704170--12704221 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
12704160 TGACTTAGGC
12704170 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
12704196 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
12704222 TCGGACTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:12705101 original size:26 final size:26
Alignment explanation
Indices: 12705071--12705123 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12705061 GTTGACATAG
* *
12705071 GCATACGGAGTTCGTTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
12705097 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12705123 G
1 G
12705124 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12705185 original size:903 final size:895
Alignment explanation
Indices: 12703296--12706301 Score: 3869
Period size: 903 Copynumber: 3.4 Consensus size: 895
12703286 GACATAGGCT
** *
12703296 TACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCAAGGGTTGCGGCAGCACATACTGGGCT
1 TACGGAGTTCATTCCCAGTCTAAGATCGA-ACTGGACCAAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * * * * *
12703360 CGAGCATGTGTCGGTGGCACATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCACCGGAGAACC
65 CGGGCATGTGTTGGTGCCGCATTTTTCTTC-AC-CGG-ACCATCATCGAGCAACGCCGGAGAACC
* * * * * *
12703425 TAACCGGTGGCATTAGGGTTT-CGACGATCGGGGGAG-CCGGGGGGTATGCGTACATGATGTTCG
127 TGACCGGCGGCATT-GGGTTTCCGACGATCGGGGGGGTCAGGGGGGT-TGCGCACATGATGTGCG
* ** * *
12703488 CTGGGCACTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTTGAGAACTCACAC
190 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
12703553 CCCCTTATAGAGCCTTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
255 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12703618 GGACAC-TTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGGTTTTTAGCTGAA-TTTTTTGT
320 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AAGTTTTTAGCTGAATTTTTTTGT
* * *
12703681 GCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAA
384 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAACCTCCTTCTGAAAAAA
* * *
12703746 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTTG
449 TTTTAAAAAATCCTGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
12703811 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCAT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCAT
* * *
12703876 TGGCATGCAGAAATATGAAGATCTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
579 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
* * * *
12703941 ATCCTGTCTCTCTGGCCGGCGTAGTGCCTGCCCG-TCCGCCATCCCGCTCGTTTCGTCGGTAGGC
644 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGAT-CGCC--CCCGCTCGTTTAGTCGGTTGGC
* *
12704005 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCA-GACCAAGGGTTGC-AGTAGCAGGA
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTGCGA-TAGCAGGA
* * * * * **
12704068 TCGACAGCACGTAGAGGTGGACCTGATCGATCCCCGGCTTGCGCATGCCACCCCTCTAGCCAGCT
769 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCACCCCTCTGGCTGGCT
*
12704133 GAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAA
833 GAGCA-CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
12704197 TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCAAGGGTTGCGGCAACACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
12704262 AGGCATGTATTGGTGCCGTATTTTTCTTCACCGAGGCACCATCATCGGAGCAACGCCGGAGAACT
66 GGGCATGTGTTGGTGCCGCATTTTTCTTCACC--GG-ACCATCATC-GAGCAACGCCGGAGAACC
* ** *
12704327 TGACTCGGCGGCTTTGGGGTTTCCGGTGATCGAGGGGGTCAGGGGGG-TGCCGCACATGATGTGC
127 TGAC-CGGCGGCATT-GGGTTTCCGACGATCGGGGGGGTCAGGGGGGTTG-CGCACATGATGTGC
* *
12704391 AATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCACA
189 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
12704455 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
254 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
12704520 GGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
* *
12704585 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCACCTTCTG-AAAAA
384 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAACCTCCTTCTGAAAAAA
* *
12704649 TTTTAAAAAATCCTGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
449 TTTTAAAAAATCCTGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
12704714 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTG-CA
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGCCA
* * **
12704778 TTGCCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTTG
578 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
* *
12704843 CATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCGATCGCCCGCCCGCTCGTTTAATCGGTTGGC
643 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGATCG-CC-CCCGCTCGTTTAGTCGGTTGGC
* ** *
12704908 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACAGGATTGAGGGTTGCGATAGCAAGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGATAGCAGGATC
* * *
12704973 GGCAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTACCCCTCTGGCTGGCTGA
771 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC-ACCCCTCTGGCTGGCTGA
* * * * * * *
12705038 GCACTTGCACGTTTGCTTCGTGAGTTGACATAGGCATACGGAGTTCGTTCCCAATCTAAGCA
835 GCAC-CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
12705100 TACAGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
12705165 GGGTATGTGTTGGTGCCGTATTTTTCTT---C-G----TC--GGGGCATCGCCGGAGAACCTGAC
66 GGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGACCATCATCGAGCAACGCCGGAGAACCTGAC
* * * *
12705220 AGGCGGCATTTGGG-TTCCTACGATCGGGGGGGCCGGGGGGAGGTGTGCGCACATGATGTGCGAT
131 CGGCGGCA-TTGGGTTTCCGACGATCGGGGGGGTC-AGGGG-GGT-TGCGCACATGATGTGCGAT
** * *
12705284 GGGTGCTGGTACTTGGCCCTTATATTTACCTCCTATCCCTCATCAAACCTCGAGAACTCATACCC
192 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
12705349 CCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATGGGG
257 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
12705414 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCA
* *
12705479 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTGAACCTCCTT-TCGAAAAAATT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAACCTCCTTCT-GAAAAAATT
** ** *
12705543 TTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCC
451 TTAAAAAATCCTGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
12705608 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTG
516 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTG
* * ** * *
12705673 GCACACAGAAATATGAGGATGTGCCTGAAA--CTGCTACCACCCTATCGGTCCACGGCTTGCGCA
581 GCACGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
* * *
12705736 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-A---------CTCATTTTGTCAGTTGGCTTAG
645 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGATCGCCCCCGCTCGTTTAGTCGGTTGGCTTAG
* * * ** *
12705791 CGCATACGGAGTTAATTCCCAATCTAAGATCAGACCGGAACCGAGGGTCACGATAGTAGGATCGA
710 -GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGG-ACCGAGGGTTGCGATAGCAGGATCGA
* ** * * * *
12705856 CAGCACGCAGAGGGGGTCCCGACTAATCCCCGACTTACGCATCCCGCCCCTCTGG-TCGACTGAG
773 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCACCCCTCTGGCT-GGCTGAG
* **
12705920 CACCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
836 CACCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
12705980 TACGGAATTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTACGACAGCACATGCTGGGCT
1 TACGGAGTTCATTCCCAGTCTAAGATCGAACT-GGACCAAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
12706044 CGGGCATGTGTTGGTGCTGCACTTTTCTTTACCGGAGCATCAT----C-A-----GAGAACCTGA
65 CGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGACCATCATCGAGCAACGCCGGAGAACCTGA
** * * * * *
12706099 CCGATGGCATTAGGATT-CTAGCGATCGGGGGGGTTAGGGGGGTTATACGCACATGATGTGCGAT
130 CCGGCGGCATTGGGTTTCCGA-CGATCGGGGGGGTCAGGGGGG-T-TGCGCACATGATGTGCGAT
* *
12706163 GGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCC
192 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
12706228 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
257 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
12706293 ACACTTTTT
322 ACACTTTTT
12706302 CCCCGACTTG
Statistics
Matches: 1854, Mismatches: 206, Indels: 112
0.85 0.09 0.05
Matches are distributed among these distances:
878 2 0.00
879 179 0.10
880 192 0.10
881 72 0.04
882 2 0.00
883 1 0.00
884 1 0.00
886 1 0.00
887 15 0.01
888 15 0.01
889 23 0.01
890 50 0.03
891 266 0.14
892 151 0.08
893 3 0.00
897 1 0.00
900 2 0.00
901 91 0.05
902 23 0.01
903 602 0.32
904 155 0.08
905 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
GGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGACCATCATCGAGCAACGCCGGAGAACCTGAC
CGGCGGCATTGGGTTTCCGACGATCGGGGGGGTCAGGGGGGTTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAACCTCCTTCTGAAAAAATTTTAAA
AAATCCTGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCACG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGATCGCCCCCGCTCGTTTAGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCACCCCTCTGGCTGGCTGAGCACCGCACGC
TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
Found at i:12705990 original size:26 final size:26
Alignment explanation
Indices: 12705951--12706003 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12705941 GTTGACTTAG
*
12705951 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
12705977 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
12706003 G
1 G
12706004 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:12706408 original size:26 final size:26
Alignment explanation
Indices: 12706371--12706423 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12706361 GTTGACTTAG
*
12706371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* *
12706397 GCATACGTAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
12706423 G
1 G
12706424 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:12706726 original size:433 final size:419
Alignment explanation
Indices: 12705882--12706734 Score: 1115
Period size: 433 Copynumber: 2.0 Consensus size: 419
12705872 TCCCGACTAA
* * *
12705882 TCCCCGACTTACGCATCCCGCCCCTCTGGTCGACTGAGCACCGCACACTCATTTCGTGGGTTGAC
1 TCCCCGACTTACGCATCCCACCCCTCTGGCCGACTGAGCACCACACACTCATTTCGTGGGTTGAC
*
12705947 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCGGATC
66 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCAATCCCAGTCTAAGATCGGATC
* * * *
12706012 GGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCACTTTTCTTTACC
131 AGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGCGTTGGTGCCGCACTTTTCTTTACC
* * * * *
12706077 GGAGCATCATCAGAGAACCTGACCGATGGCATTAGGATTCTAGCGATCGGGGGGGTTAGGGGGGT
196 GGAGCATCACCAGAGAACCTGACCGACGGCATTAGGATTCTAGCGATCGGGGGAGTCAGGCGGGT
* **
12706142 TATACGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
261 TAGACGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
12706207 AAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
326 AAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
12706272 ATTAAAGTGTCTGAAATGGGGACACTTTT
391 ATTAAAGTGTCTGAAATGGGGACACTTTT
* ** * *
12706301 TCCCCGACTTGCGCATCCCACCCCTCTGGCCGGTTGAGTGC-CCACACGCTCGTTTCGTGGGTTG
1 TCCCCGACTTACGCATCCCACCCCTCTGGCCGACTGA--GCACCACACACTCATTTCGTGGGTTG
* * *
12706365 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGTAGTTCAATCCTAGTCTAAGATCGGA
64 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCAATCCCAGTCTAAGATCGGA
* * * *
12706430 TCAGTCCGAGGGTTGCGATAGCACATGCTAGGG-TCAGGCATGCGTTGGTGCCGCATTTTTCTTC
129 TCAGACCGAGGGTTACGACAGCACATGCT-GGGCTCAGGCATGCGTTGGTGCCGCACTTTTCTT-
* * * * *
12706494 ACTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTT-TCGGTGAT
192 --T--------A-C--CGGAGCATCACCAGAGAACCTGACCGACGGCATTAGGATTCT-AGCGAT
* * * *
12706558 CGGGGGAG-CCGGACGGG-TGGGCGCACATGATGTGCGATTGGTACTGGTACTTGGCCCTTATAT
243 CGGGGGAGTCAGG-CGGGTTAGACGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATAT
* *
12706621 TGGGCCCCTATCCCTTATCAAACCTCGAGAACTCAAACCCCCTTACAA-AGCATTTGAGATTTTA
307 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTA-AAGAGCATTTGAGATTTTA
12706685 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
371 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
12706734 T
1 T
12706735 TCAAATGGTC
Statistics
Matches: 373, Mismatches: 41, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
419 32 0.09
420 132 0.35
421 5 0.01
423 1 0.00
431 1 0.00
432 1 0.00
433 150 0.40
434 51 0.14
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (419 bp):
TCCCCGACTTACGCATCCCACCCCTCTGGCCGACTGAGCACCACACACTCATTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCAATCCCAGTCTAAGATCGGATC
AGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGCGTTGGTGCCGCACTTTTCTTTACC
GGAGCATCACCAGAGAACCTGACCGACGGCATTAGGATTCTAGCGATCGGGGGAGTCAGGCGGGT
TAGACGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTT
Found at i:12708183 original size:26 final size:26
Alignment explanation
Indices: 12708147--12708199 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12708137 GTTGACTTAG
12708147 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12708173 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12708199 G
1 G
12708200 ATGGACTGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12708595 original size:881 final size:877
Alignment explanation
Indices: 12706301--12709066 Score: 3406
Period size: 882 Copynumber: 3.1 Consensus size: 877
12706291 GGACACTTTT
* * ** *
12706301 TCCCCGACTTGCGCATCCCACCCCTCTGGCCGGTTGAGTGCCCACACGCTCGTTTCGTGGGTTGA
1 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGATGAGCACCCGCACGCTCGTTTCGTGGGTTGA
*
12706366 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGTAGTTCAATCCTAGTCTAAGATCGGA-
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC-ATCC-AGTCTAAGAT-GGAC
* * ** *
12706430 TCAGTCCGAGGGTTGCGATAGCACATGCTAGGG-TC-AGGCATGCGTTGGTGCCGCATTTTTCTT
128 TGA-TCAG-GGGTTGCGGCAGCACATGCT-GGGCTCGA-GCATGTGTTGGTGCCGCATTTTTCTT
* * * **
12706493 CACTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGGTGAT
189 CGCTGGGGCACCA---TC---G-----CCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * * * *
12706558 CGGGGGAGCCGGACGGGTGGGCGCACATGATGTGCGATTGGTACTGGTACTTGGCCCTTATATTG
243 CGGGGG-GTCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
12706623 GGCCCCTATCCCTTATCAAACCTCGAGAACTCAAACCCCCTTACAA-AGCATTTGAGATTTTACA
306 GCCCCCTAT-CCTCATCAAACCTCGAGAACTCACACCCCCTTA-AAGAGCATTTGAGATTTTACA
*
12706687 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
369 GGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
12706752 GTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGT
434 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * ** * **
12706817 CTACTAAGTTTGGAGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCGAACCACAAAAAGTT
499 CTACAAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * * * *
12706882 TCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGTCGTGAAACTTCACATGAAGGCTTAAGGG
564 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
12706947 GCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
629 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * * *
12707012 AACCCACCTACCACCCTATTGA-TCTGCGACTTGTACATCCCGTCTCTCTGGCAGACGTAGTGCC
694 AACCCACCTACCACCCTATCGATTC-ACGACTTGTGCATCCCGTCTCTCTGGC-GGCGTAGTG--
* *
12707076 CACCCGTCCACCCGCCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTGCCAA
755 --CCCG--C-CCCG-CCGTC-G-T--TTT-GTCGGTTGGCTTAGGCATACGAAGTTCATT-CCAG
* * * * *
12707141 TCTAAGATCAGACCGGA--TGGAGGGTTGCGGTAGC-AGGATCGACAGCATGTAGAGCGGGACCC
808 TCTAAGATCGGACCGGACCT-GAGGGTTGCGGCAGCAAGGATCGACAGCACGTGGAGAGGGACCC
**
12707203 GAAAGA
872 GGCAGA
* ** * * * *
12707209 TCCCCGGCTTGCTTATCCCTCCCCTCTGGCTGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGA
1 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGATGAGCACCCGCACGCTCGTTTCGTGGGTTGA
12707274 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG-------A-TC------GGACTG-
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATCCAGTCTAAGATGGACTGA
* *
12707320 --A-GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGCTGGG
131 TCAGGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGCTGGG
*
12707382 GCACCATCGCCGGAGCATCATCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGAGGG
196 GCACCATCGCC---G----A----AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGG
* *
12707447 GTCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTT
249 GTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
12707512 ATCTCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCT
313 ATC-CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
12707577 ACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTATACA
377 ACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
12707642 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTTA-AAA
442 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-TACAAA
* *
12707706 GCTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
506 GTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
12707771 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
571 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
12707836 TATGAGTTT-CAAAGCCATAAAAATGGCATTGGTAGGCAGAAATAT-AGAGATGTGCCTAAACCC
636 TATGAATTTAC-AAGCCATAAAAATGGCATTGGCACGCAGAAATATGA-AGATGTGCCTAAACCC
* *
12707899 ACCTACCACCCTATCGATTCACGACTTGCGCATCCCGTCTCTTTGGTCGGCGTAGTGCCCG-CCC
699 ACCTACCACCCTATCGATTCACGACTTGTGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCC
* * * *
12707963 G-C-TCGTTTTGTCGGTTGGCTTAGGCATACGCAGTTCATTCTTAGTCTAAGATTGGATCGGACC
763 GCCGTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTC-CAGTCTAAGATCGGACCGGACC
* * * * *
12708026 TAAGGGTTACGGCAGCAAGGATTGATAGCACGTGGAGAGGGACCCGGCCGA
827 TGAGGGTTGCGGCAGCAAGGATCGACAGCACGTGGAGAGGGACCCGGCAGA
* * * * *
12708077 TCCCCGGCTTGTGCATCTCGCCCCTCTAGCCGGATGAGCACCCGCACGCTCGTTTTGTGGGTTGA
1 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGATGAGCACCCGCACGCTCGTTTCGTGGGTTGA
12708142 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGACT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-T-CCAGTCTAAGATGGACT
* *
12708207 GGATCAGGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGTATTTTTCTTCGCT
129 -GATCAGGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGCT
* * *
12708272 GGGGCACCATCGCCGAAGAACCTGACCGGCGACATTAGGGTTCCGACGATCGAGGGGGTCGGGGG
193 GGGGCACCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGTCGGGGG
*
12708337 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCGTCAT
257 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC-TCAT
* *
12708402 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGC
321 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGC
* *
12708467 CATTAAAGTGTGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTT
386 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
12708532 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
451 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCC
* * *
12708597 AAAAATCCTT-TCGAAAAAA-TTTAAAAAATCTCGAACTGTAAAAAGTTTCCAAAATCGTGAAAA
516 AAAAATCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* *
12708660 ATAGAAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
580 ATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
12708725 TACAAGCCATAAAAGTGGCATTGGCATGCAAAAATATGAAGATGTTACCTAAACCCACTTACCAC
644 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG-TGCCTAAACCCACCTACCAC
* * *
12708790 CCTATCGATCCCACG-CTTGTGCAT-CCGTCTCTCTGCCGGCGTAGTGCCCTGCCCGCAGCCCTT
708 CCTATCGAT-TCACGACTTGTGCATCCCGTCTCTCTGGCGGCGTAGTGCCC-GCCC-C-G-CCGT
* * * *
12708853 CGTTTCGTCGATTAGCTTAGGCATACGAAGTTCATTCCCAGTTTAAGATCGGACCGGACC-GAGG
768 CGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATT-CCAGTCTAAGATCGGACCGGACCTGAGG
* * * *
12708917 GTTGCAGCAGCAA-GATCGGCAGCACG-GAGAGGGGGACCCGGCTGA
832 GTTGCGGCAGCAAGGATCGACAGCACGTG-GAGAGGGACCCGGCAGA
* * * *
12708962 TCCCCGACTTGCGCATCCCGCCCCTTTGGCC-GACTAAGCACCCGCACGCTCATTTCATGGGTTG
1 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGA-TGAGCACCCGCACGCTCGTTTCGTGGGTTG
12709026 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
65 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
12709067 CCGAACCGAT
Statistics
Matches: 1632, Mismatches: 155, Indels: 165
0.84 0.08 0.08
Matches are distributed among these distances:
865 1 0.00
866 44 0.03
867 15 0.01
868 114 0.07
869 3 0.00
870 2 0.00
871 4 0.00
872 3 0.00
874 5 0.00
876 1 0.00
878 4 0.00
879 2 0.00
880 62 0.04
881 376 0.23
882 614 0.38
883 16 0.01
884 4 0.00
885 118 0.07
886 16 0.01
887 54 0.03
888 7 0.00
889 1 0.00
890 1 0.00
892 1 0.00
893 68 0.04
894 2 0.00
895 1 0.00
904 2 0.00
906 1 0.00
907 2 0.00
908 88 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (877 bp):
TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGATGAGCACCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATCCAGTCTAAGATGGACTGA
TCAGGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGCTGGG
GCACCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAA
TCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TTCACGACTTGTGCATCCCGTCTCTCTGGCGGCGTAGTGCCCGCCCCGCCGTCGTTTTGTCGGTT
GGCTTAGGCATACGAAGTTCATTCCAGTCTAAGATCGGACCGGACCTGAGGGTTGCGGCAGCAAG
GATCGACAGCACGTGGAGAGGGACCCGGCAGA
Found at i:12709136 original size:161 final size:159
Alignment explanation
Indices: 12708868--12709248 Score: 441
Period size: 161 Copynumber: 2.4 Consensus size: 159
12708858 CGTCGATTAG
* * *
12708868 CTTAGGCATACGAAGTTCATTCCCAGTTTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCAAGAT
* * *
12708933 CGGCAGCACGGAGAGGGGGACCCGGCTGATCCCCGACTTGCGCATC-CCGCCCCTTTGGCCGACT
66 CGACAGCACGCAGAGGGGGACCCGGCTGATCCCCGACTTGCGCATCGCCGCCCCTCTGGCCGACT
12708997 AAG--CACCCGCACGCTCATTTCATGGGTTGA
131 AAGCACACCCG-AC-CTCATTTCAT-GGTTGA
* ** *
12709027 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACCGAACCGATGGTTGTGGCAGCAGG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGACCGAACCGAGGGTTGCAGCAGCAAG
* * *
12709092 ATCGACAGCATGCAGAGGGGGACCC-GATCGATCCCCGGCTTGCGCATCGCCGCCCCTCTGGCCG
64 ATCGACAGCACGCAGAGGGGGACCCGGCT-GATCCCCGACTTGCGCATCGCCGCCCCTCTGGCCG
** * * *
12709156 GTTGAGCACACCCGACCTCGTTTCGTGGTTGA
128 ACTAAGCACACCCGACCTCATTTCATGGTTGA
* * * * *
12709188 CTATA-GCATAC-GAGTTCATTCCCAGTCTAAAAATCAGATCGGACCGAGGGTTGCGGCAGCA
1 CT-TAGGCATACGGAGTTCATTCCCAGTCT-AAGATCGGACCGAACCGAGGGTTGCAGCAGCA
12709249 CATGCTAGGC
Statistics
Matches: 190, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
159 52 0.27
160 23 0.12
161 80 0.42
162 27 0.14
163 2 0.01
164 6 0.03
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.20
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCAAGAT
CGACAGCACGCAGAGGGGGACCCGGCTGATCCCCGACTTGCGCATCGCCGCCCCTCTGGCCGACT
AAGCACACCCGACCTCATTTCATGGTTGA
Found at i:12711053 original size:162 final size:159
Alignment explanation
Indices: 12710773--12711170 Score: 478
Period size: 161 Copynumber: 2.5 Consensus size: 159
12710763 CCTGCCAGCC
* * * * **
12710773 CGCTCGTTTCATCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTTTAAGATA-GGACCGGATT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTTTAAGATATGGACCAGACC
** * *
12710837 GAGGGTTGCAGCAACAAGATCGGCAGCATGGAGAGGGGGACCCGGCTAATCCCCGACTTGCGCAT
65 GAGGGTTGTGGCAACAAGATCGGCAGCACGCAGAGGGGGACCCGGCTAATCCCCGACTTGCGCAT
* * * *
12710902 CCCGGCCCCTTTGGTCGGCTAAGCACTCGCA
130 CCC-GCCCCTCTGGCCGACTAAGCACCCGCA
* * *
12710933 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGACCAAAG
1 CGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTTTAAG-ATATGGACCAGAC
* ** * * * *
12710998 CGAGGGTTGTGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCC-GATCGATCCCCGGCTTGCGC
64 CGAGGGTTGTGGCAACAAGATCGGCAGCACGCAGAGGGGGACCCGGCT-AATCCCCGACTTGCGC
*
12711062 ATCCCGCCCCTCTGGCCGACTGAGCACCCGCA
128 ATCCCGCCCCTCTGGCCGACTAAGCACCCGCA
* *
12711094 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGAT-TGGATCAGACC
1 CGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTTTAAGATATGGACCAGACC
12711158 GAGGGTTGTGGCA
65 GAGGGTTGTGGCA
12711171 GCACATGCTG
Statistics
Matches: 203, Mismatches: 31, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
159 20 0.10
160 47 0.23
161 76 0.37
162 60 0.30
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CGCTCGTTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTTTAAGATATGGACCAGACCG
AGGGTTGTGGCAACAAGATCGGCAGCACGCAGAGGGGGACCCGGCTAATCCCCGACTTGCGCATC
CCGCCCCTCTGGCCGACTAAGCACCCGCA
Found at i:12712025 original size:26 final size:26
Alignment explanation
Indices: 12711989--12712041 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12711979 GTTGACTTAG
*
12711989 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12712015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12712041 G
1 G
12712042 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12713014 original size:13 final size:14
Alignment explanation
Indices: 12712990--12713018 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
12712980 TTTTCTTCGT
12712990 CGGGGTACCATCGC
1 CGGGGTACCATCGC
12713004 CGGGG-ACCATCGC
1 CGGGGTACCATCGC
12713017 CG
1 CG
12713019 AGCATCGCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.14, C:0.38, G:0.38, T:0.10
Consensus pattern (14 bp):
CGGGGTACCATCGC
Found at i:12713026 original size:10 final size:10
Alignment explanation
Indices: 12713011--12713035 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
12713001 CGCCGGGGAC
12713011 CATCGCCGAG
1 CATCGCCGAG
12713021 CATCGCCGAG
1 CATCGCCGAG
12713031 CATCG
1 CATCG
12713036 TCGGAGAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.40, G:0.28, T:0.12
Consensus pattern (10 bp):
CATCGCCGAG
Found at i:12713501 original size:900 final size:881
Alignment explanation
Indices: 12710933--12713672 Score: 3399
Period size: 897 Copynumber: 3.1 Consensus size: 881
12710923 AGCACTCGCA
* * * *
12710933 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT-ATGGACCAAA
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCA--GACCAGA
* ** * * * * * * * *
12710997 GCGAGGGTTGTGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
63 CCGAGGGTTGCCGCAGCAGAATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGACATGCAC
* * * *
12711062 ATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTC-G-TG-GG-T-T-GA-C-TT-AG
128 ATCCCGCCCCTCTGACCGACTGAGCACCCACAAGCTCATTTCTGTTGAGGATATGGATCATTCAG
** * * * **
12711118 -GCATACGGAGTTCATTCCCAGTTTAAGATTGGATCAGACCGAGGGTTGTGGCAGCACATGCTGG
193 AGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGG
* * * * * *
12711182 GCTCGGGCATGTGTTGGTGTCACATTTTTCTTCGCC-GAGGCACCATCGTCGGAGCATCGTCAGA
258 GCTAGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCAG-GGCACCAGCATCGGAGCATCGTCGGA
* * **
12711246 GAAGCTGACCGACAGCATTGGGGTTCAGATGATCGGAGGGGTCGGGGGGTGTGCGCACATGATGT
322 GAACCTGACCGACGGCATTGGGGTTC-GGCGATC-GAGGGGTCGGGGGGTGTGCGCACATGATGT
12711311 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
385 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12711376 CATCCCCTTAAAGAGC-TATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
450 CACCCCCTTAAAGAGCAT-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * ** * *
12711440 ATGGGGACACTTTTTTTAAATATTCACAAAATCTTGTACACGTT-GATTTTTTAGCTGAATTTTT
514 ATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTAC-CCTTCGAGTTTTTAGCTGAATTTTT
** * *
12711504 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCACTAAAATTCCTTTCGAA
578 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCC-TCCGAA
* * *
12711569 AAAATTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
642 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
12711634 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
707 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
12711699 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
772 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
12711764 GCGCATCCCGTCTCTTTGGTCGGCGTAGTGC-CCGCCCACCCGCC
837 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGCCCGCCCGCC
** * * * *
12711808 CGCTCGTTTCATATGTTGGCTTAGG-ATACGGAGTTCATTCCAAGTCCAAGATTAGACCGGACCG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
** * * ** ***
12711872 AGGGTTGTGGCAGTAGAATCGACAGCACATAGAGGGGGACCCGATCGATCCCCGATTTGTGTATC
66 AGGGTTGCCGCAGCAGAATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGACATGCACATC
* * * * *
12711937 CCGCCCCTCTGACTGGCTTAGCTCCCGCAAGCTCATTTCTTGGTTGACTTAGGCATATGGAGTTC
131 CCGCCCCTCTGACCGACTGAGCACCCACAAGCTCATTTC-T-GTTG----AGG-ATATGGA--TC
** *
12712002 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGT
187 ATT--CAG----AGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGC
* *
12712067 AGCACATGCTGGGCTAGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCATCGAA
246 AGCACATGCTGGGCTAGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCAGGGCACCAGCATCGGA
* * * * *
12712132 GCATCGTCGGAGAACCTGACCGGCGGTATTGGGGTTCGGCGATCGGGGGGGCGGGGGGTGTGCGG
311 GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCGGCGATCGAGGGGTCGGGGGGTGTGCGC
*
12712197 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTC
376 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
12712262 GAGAACTCACACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCAATTAAA
441 GAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
12712327 GTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCT
505 GTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCT
* * * *
12712392 GAATTTTTTTTTTGCATGTCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCTAAAACT
570 GAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACT
* * * *
12712457 CCTCGTGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAA
634 CCTC-CGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * *
12712522 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTGCAAGCC
698 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * * *
12712587 ATAAAAATGGCATTGGTC-CGCAGAAATATGAAGATGTGCCTAAACCCACTTAGCATCCTATTGA
763 ATAAAAATGGCATTGG-CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
12712651 TACACGGCTTACGCATCCCATCTCTCTGACCGGCGTAGTGCCCATCCGCCCGCCCGCC
827 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-TCCGCCCGCCCGCC
*
12712709 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGCCAGACCG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * * *
12712774 AGGGTTGCCGTAGCAGGATCGACAGCACGCAGAGGGGGA-CCGGTCGATCCTCGGCATGCACATC
66 AGGGTTGCCGCAGCAGAATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGACATGCACATC
* * *
12712838 CCGCCCTTCTGGCCGACTGAGCACCCACACGCTCATTTC-G-TG-GG-T-T-GA-C-TT-AG-GC
131 CCGCCCCTCTGACCGACTGAGCACCCACAAGCTCATTTCTGTTGAGGATATGGATCATTCAGAGC
*
12712893 ATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACGTGCTGGGCT
196 ATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCT
* *
12712958 CGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGTACCATCGCCGGGGACCATCGCCGAGCA
261 AGGGCATGTGTTGGTGCCGCATTTTTC-T--TC---G--CCA------GGG--CA---CC-AGCA
*
12713023 TCGCCGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCTGGCGATCGAGCGGGTCCGGG
306 TCG--GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTC-GGCGATCGAG-GGGT-C-GG
12713088 GGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
365 GG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * *
12713153 TAATCAAACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCTG
429 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
12713218 TAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCAAATGGTCAC-AAATCTTGTACCCTTCG
494 TAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCG
*
12713282 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCCAGTTTGG
559 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
* * *
12713347 GGCCAAAACTCCATCCGAAAAAATTTTAAAAGATCTCAAACCGTAAAAAGTTTCAAAAATCGTGA
624 GGCTAAAACTCC-TCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGA
* * *
12713412 AAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGCATGAA
688 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
12713477 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCAACCTACCA
753 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
12713542 CCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCTGACGTA--G-T--GCCCGCCCGCC
818 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGCCCGCCCGCC
* *
12713601 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACC
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACC
*
12713665 AAGGGTTG
65 GAGGGTTG
12713673 TGACAGCACA
Statistics
Matches: 1617, Mismatches: 180, Indels: 119
0.84 0.09 0.06
Matches are distributed among these distances:
872 95 0.06
873 2 0.00
874 23 0.01
875 23 0.01
876 90 0.06
877 1 0.00
879 2 0.00
881 4 0.00
882 1 0.00
883 1 0.00
884 6 0.00
885 3 0.00
888 3 0.00
889 3 0.00
890 4 0.00
891 1 0.00
892 83 0.05
894 1 0.00
895 97 0.06
896 117 0.07
897 400 0.25
898 39 0.02
899 11 0.01
900 258 0.16
901 115 0.07
902 153 0.09
903 81 0.05
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (881 bp):
CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
AGGGTTGCCGCAGCAGAATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGACATGCACATC
CCGCCCCTCTGACCGACTGAGCACCCACAAGCTCATTTCTGTTGAGGATATGGATCATTCAGAGC
ATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCT
AGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCAGGGCACCAGCATCGGAGCATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCGGCGATCGAGGGGTCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
TACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCCTCCGAAAAAATTTTA
AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCTCCGCCCGCCCGCC
Found at i:12714450 original size:710 final size:710
Alignment explanation
Indices: 12713021--12715092 Score: 3544
Period size: 710 Copynumber: 2.9 Consensus size: 710
12713011 CATCGCCGAG
* * *
12713021 CATCGCC-GAGCATCGTCGGAGAACCTGACCGACGGCATTAGG-G-TTCTGGCGATCGAGCGGGT
1 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT-GGTGTTTC-GACGATCG-GGGGGG
*
12713083 CCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
63 CCGGGGG-GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
12713148 ATCCCTAATCAAACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
127 ATCCCTAATCAAACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
12713213 ACCTGTAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCAAATGGTCACAAATCTTGTACCC
192 ACCTGTAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCAAATGGTCACAAATCTTGTACCC
12713278 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCCAGT
257 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCCAGT
12713343 TTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAGATCTCAAACCGTAAAAAGTTTCAAAAATC
322 TTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAGATCTCAAACCGTAAAAAGTTTCAAAAATC
12713408 GTGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGCA
387 GTGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGCA
12713473 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCAACCT
452 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCAACCT
12713538 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCTGACGTAGTGCCCGCCCGCCCG
517 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCTGACGTAGTGCCCGCCCGCCCG
12713603 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAG
582 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAG
12713668 GGTTGTGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCAC
647 GGTTGTGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCAC
12713732 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGTGTTTCGACGATCGGGGGGGCCG
1 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGTGTTTCGACGATCGGGGGGGCCG
12713797 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
66 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
12713862 CTAATCAAACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCT
131 CTAATCAAACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCT
12713927 GTAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCAAATGGTCACAAATCTTGTACCCTTCG
196 GTAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCAAATGGTCACAAATCTTGTACCCTTCG
12713992 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCCAGTTTGG
261 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCCAGTTTGG
12714057 GGCCAAAACTCCATCCGAAAAAATTTTAAAAGATCTCAAACCGTAAAAAGTTTCAAAAATCGTGA
326 GGCCAAAACTCCATCCGAAAAAATTTTAAAAGATCTCAAACCGTAAAAAGTTTCAAAAATCGTGA
12714122 AAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGCATGAA
391 AAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGCATGAA
12714187 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCAACCTACCA
456 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCAACCTACCA
12714252 CCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCTCG
521 CCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCTCG
12714317 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTT
586 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTT
12714382 GTGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCAC
651 GTGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCAC
* *
12714442 CATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGTGTTTCGACAATCGGGGGGGCC-
1 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGTGTTTCGACGATCGGGGGGGCCG
*
12714506 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCC
66 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * ** * * *
12714571 CTCATTAAACCTTGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
131 CTAATCAAACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCT
* * * *
12714636 CTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
196 GTAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCAAATGGTCAC-AAATCTTGTACCCTTC
* * * **
12714701 GAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACAGAGTTTG
260 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCCAGTTTG
* * * * * * *
12714766 GGGCTAAAACTCCTTTCAAAAAAATTTAAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCGT
325 GGGCCAAAACTCCATCCGAAAAAATTTTAAAAGATCTC-AAACCGTAAAAAGTTTCAAAAATCGT
* * * * *
12714830 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCACTGTATG
389 GAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGCATG
* *
12714895 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
454 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCAACCTAC
* * * * * * * * ** *
12714960 CACCTTATCGATCCACGACATGTGCATCCTGTCTCTTTGGCCGGTGTAGTGCCCGCCCGCCTGCT
519 CACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCT
* * * * * * *
12715025 CGTTTTGTAGATTTGCTCAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGACCGGA-CAGAGG
584 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCA-AGG
12715089 GTTG
648 GTTG
12715093 CGGGAGCAGG
Statistics
Matches: 1300, Mismatches: 55, Indels: 13
0.95 0.04 0.01
Matches are distributed among these distances:
709 170 0.13
710 1067 0.82
711 20 0.02
712 40 0.03
713 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (710 bp):
CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGTGTTTCGACGATCGGGGGGGCCG
GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTAATCAAACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCT
GTAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCAAATGGTCACAAATCTTGTACCCTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCCAGTTTGG
GGCCAAAACTCCATCCGAAAAAATTTTAAAAGATCTCAAACCGTAAAAAGTTTCAAAAATCGTGA
AAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGCATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCAACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCTCG
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTT
GTGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCAC
Found at i:12716131 original size:26 final size:26
Alignment explanation
Indices: 12716095--12716145 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12716085 TGACTTAGGC
12716095 ATACAGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
*
12716121 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
12716146 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:12720537 original size:26 final size:26
Alignment explanation
Indices: 12720501--12720553 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12720491 GTTGACTTAG
12720501 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12720527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12720553 G
1 G
12720554 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12720925 original size:892 final size:887
Alignment explanation
Indices: 12718530--12722287 Score: 4239
Period size: 900 Copynumber: 4.2 Consensus size: 887
12718520 TCCCGCCCAC
* * * *
12718530 CCGCTCGTTTCATCGGTTGACTTAGG-ATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
** * ** * * *
12718594 GGGGGTTGCAGTAGTA-GAATCGACAGCACATAGAGGGGGACCCGATCGATCCTCGGCTTGCGCA
66 -GAAG-TG--GT--TACGCA--G-CAGCACGCAGAAGGGGACCCGATTGATCCCCGGCTTGCGCA
* * * *
12718658 TCCTGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTCCATGGGTTAACTTAGGCTTACGGAG
122 TCCTGCCCCTCTGGCCG-CTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
* * * * * *
12718723 TTCATTCCTAGTCTCAGCATATGGAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTGT
186 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC
* * * * * *
12718788 GACAACACATGTTGGGCACGGGCATGT-CTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCAC
251 GGCAGCACATGCTGGGCTCGGGCATGTGC-TGGTGCCACATTTTTCTTCGTCGGGGCACCATCAC
** * *
12718852 CAGG-GCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGG
315 C-GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG
*
12718916 TGTGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATC
379 TGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
12718980 AAACCTCGAGAACT-ACA-CCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
444 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
12719043 ATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
509 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
* * * * **
12719108 TTAGCTGAATATTTTTGTCCATGCCAAAACAAATTCAAGGATCACATCTACCAAGGTTCAGGCCA
574 TTAGCTGAAT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA-GTTTGGGCCA
* * * ** *
12719173 AAACTCCTTCCGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
637 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * *
12719238 AGAAAACGAGTCTTCTTGCCATGAAATTTCACGTGAAGGCTT-AGGGACCATTGTTATAAATTTA
702 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-TATGAATTTA
* *
12719302 CAAGCCATAAAATGGCATTGGCACACAAGAAATATGAAGATGTACCTAAACCCACCTACC-CCCT
766 CAAGCCATAAAATGGCATTGGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-
* * * **
12719366 ACTCGATCCACGGCTTGCGGCAT-CCGTC-CTTTTGGCGCGACGTAGTCCGCCCGCCCGCGCCCG
829 AATCGATCCACGGCTTGC-GCATCCCGTCTC-TCTGGC-CGGCGTAGT--G-CCGCCCGTACCCG
* * ** *
12719429 CCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATTGGACCGGAC
1 -CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* ** * * * * *
12719494 TGAACGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
65 CGAA-G-TG-GTTA-C--G--CAGCAGCACGCAGAAGGGGACCCGATTGATCCCCGGCTTGCGCA
* * *
12719559 TGCTGCCCCTCTGGCCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
122 TCCTGCCCCTCTGGCC-GCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
* * * * * * *
12719624 TTCATTCCCACTCTAAGTAGACAGAGTTCATTCCCAGTCTAAGATTGGATCGAACCAAGGGTTGC
186 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC
* * * * *
12719689 -GCAGCACATTCTGGGCT-GAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
251 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACC
* ** *
12719752 GGAGCATCACCGGAGAACCTGACTGACGGCATTGATGTTCC-AGCGACCGGGGGGGCC---GGGG
316 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGG
* * *
12719813 TGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
379 TGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
12719878 AAACCTCGAGAACTCACACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCC
444 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
12719943 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAAACTTGTACACTTTGAATTT
509 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
* *
12720008 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTATCGAGTTTGGGTCCA
574 TTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCA
* * **
12720073 AAACTCCTTCCGAAAAAATTTTAAAGAATCCCGAACCGCCAAAAGTTTCAAAAATTGTGAAAAAT
637 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * *
12720138 AGAAAACGAGTCGTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATATAC
702 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
12720203 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAA
767 AAGCCAT-AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAA
**
12720268 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTTGGCGTAGTGCCTGCCCGTCCACCCG
831 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCGT--ACCCG
* * *
12720328 CGCGCTCGTTTCGTCAGTTGGCTTAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGACTAGAC
1 C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * *
12720393 CG-AG-GGTTAC-C-GCAGCATGCAGAAGGGGACCCGATTGATCCCCGACTTGCGCATCCCGCCC
65 CGAAGTGGTTACGCAGCAGCACGCAGAAGGGGACCCGATTGATCCCCGGCTTGCGCATCCTGCCC
* * **
12720454 CTCTGGCATGCTGAGCGCCCGCACGCTCATTTTTTGGGTTGACTTAGGCATACGGAGTTCATTCC
130 CTCTGGC-CGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
12720519 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAC
194 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAC
* * ** *
12720584 ATGCTGGGGTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGAGAAACCATCGCCGGAGCAT
259 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG-GGCACCATCACCGGAGCAT
* * * ** * *
12720649 CATCGAAGAACTTGACCGACAACATT-GGGTTCCGACGATCGGGGAGGCCGGGGGTGTGTGCGTA
323 CACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGGTGTGCGCA
*
12720713 AATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
387 AATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
12720778 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCAGTAGCCATTAAAGT
452 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
12720843 GTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACTCTTTGAGTTTTTAGTTGA
517 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
* * * * *
12720908 ATTGTTTTTTGCATGCCAACAAAAATACAAGGATCATGCCTACCAAGTTTGGGAACAAAACTCCT
582 ATT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCT
* * * *
12720973 TTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACA
645 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
12721038 AGTCATCTTGCCATGAAACTTCATGAGAAGGCTTAAGGGACCATTGTATG-------AAG-----
710 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
12721091 --AT-G--TT--C-C---------T-AA-A-----CT-----CACCTACCACCCTATCGGTCCAC
775 AAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCAC
*
12721127 GGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT---G-CC-TACCCG
840 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGTACCCG
* * * **
12721170 CCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTAGA-TTGAAC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-AC
* * * * * * * * *
12721234 TGAGGCTTACGGTAGTA-GGATTGGCAGCACGCAGAGGGGGACCC-AGCTGCTCCCTGACTTGCT
65 CGAAG--T--GGT--TACGCA---GCAGCACGCAGAAGGGGACCCGA-TTGATCCCCGGCTTGCG
* ** * * *
12721297 CATCCTGTCCCTCTGGCCGACTGAGTGCCCGCACGCTCATTTTGTGGGTTCACTTAGGCATACAG
120 CATCCTGCCCCTCTGGCCG-CTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
** * *
12721362 AGTTCATTCCCAGTCTAAGCATGTGGAGTTGATTCCCAGTCTAAGATCGGATTGGACCGAGGGTT
184 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT
* * * **
12721427 GCGGCAGCACATGCTAGGCTCGGGCATGTGCTAGTGCCATATTTTTCTTCGTTAGGGCACCATCA
249 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA
* *
12721492 CCGGAGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTCCGATGATCGAGGGGGCCGGGAGG
314 CCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGG-GG
* * * *
12721557 GGTGTGCGCACATGATGTGCGATGGGTGCTGGAAATTGGCCCTTATATTGGCCCGCTATCCCTCA
377 GGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * * *
12721622 TCAATCCTC-AAAAATACACTCCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTA
442 TCAAACCTCGAGAACT-CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
12721686 GCCATTAAAGTGTTTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
506 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
* * * *
12721751 TTTTTAGCTAAATTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTAGCAAGTTTGGGGC
571 TTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGC
* *
12721816 CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAA
635 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* * *
12721881 ATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTCTGAATTT
700 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*** *
12721946 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTCAACCCACCTACCACCC
765 ACAAGCCAT-AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
12722011 TATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCG--CCCG
829 AATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGTACCCG
* * *
12722069 TCCGCTCGTTTCGTCGGTTGGCTTAAGCATATGGAGTTAATTCCCAGTCTAAGATCAGACCAGAC
1 -CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * *
12722134 CG-AG-GGTTGCTGCAACAGGATCGGCAACACGTAGAGGGGGACCAGACTGGTCCCCGGCTTGCG
65 CGAAGTGGTTAC-GCAGCAGCA-C-G---CA-G-A-A-GGGGACCCGATTGATCCCCGGCTTGCG
* * *
12722197 CATCCCGTCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
120 CATCCTG-CCCCTCTGGCC-GCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
*
12722262 AAGTTCATTCCCAGTCTAAGCATACG
183 GAGTTCATTCCCAGTCTAAGCATACG
12722288 AGATTTTACA
Statistics
Matches: 2423, Mismatches: 313, Indels: 243
0.81 0.11 0.08
Matches are distributed among these distances:
840 2 0.00
841 55 0.02
842 7 0.00
844 1 0.00
845 2 0.00
846 1 0.00
847 3 0.00
849 2 0.00
850 52 0.02
852 38 0.02
853 375 0.15
854 192 0.08
855 2 0.00
860 4 0.00
861 2 0.00
862 1 0.00
868 2 0.00
869 1 0.00
871 3 0.00
872 1 0.00
873 1 0.00
874 2 0.00
876 1 0.00
877 2 0.00
883 1 0.00
884 2 0.00
885 4 0.00
887 149 0.06
888 19 0.01
889 43 0.02
890 40 0.02
891 6 0.00
892 348 0.14
893 2 0.00
894 7 0.00
895 53 0.02
896 4 0.00
897 55 0.02
898 38 0.02
899 161 0.07
900 450 0.19
901 285 0.12
902 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (887 bp):
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
GAAGTGGTTACGCAGCAGCACGCAGAAGGGGACCCGATTGATCCCCGGCTTGCGCATCCTGCCCC
TCTGGCCGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCAC
CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCAAATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGG
CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGTACCCG
Found at i:12723306 original size:26 final size:26
Alignment explanation
Indices: 12723267--12723319 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12723257 GTTGACTTAG
*
12723267 GCATACGGAATTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
12723293 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
12723319 G
1 G
12723320 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:12723447 original size:185 final size:185
Alignment explanation
Indices: 12723108--12723533 Score: 523
Period size: 185 Copynumber: 2.3 Consensus size: 185
12723098 GTTGGCTTAG
* * * *
12723108 GCATACGGAGTTCATTCCTAGTCTATGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGATA
* * * * * **
12723173 ACACGCAGAGGGGGACCCAGTCGATCCCCGACTTGCACATCCAACCCTTCTGGCCGGCTGAACAC
66 ACACACAGAGAGGGACCCAATCGATCCCCGACTTGCACATCCAACCCCTCTGCCCAACTGAACAC
* * * * *
12723238 TCGCACCCTCGTTTCGTAGGTTGACTTAGGCATACGGAATTCATTCCTAGTCTAA
131 CCGCACCCTCGTTCCATAGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAA
* * * *
12723293 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTATGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGATA
* * * * * *
12723358 GCACATAGAGAGGGACCCGAAT-GATCCCCGACTTGCGCGTGCC-GCCCCTCTGCCCAACTGAGC
66 ACACACAGAGAGGGACCC-AATCGATCCCCGACTTGCACAT-CCAACCCCTCTGCCCAACTGAAC
* * *
12723421 ACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
129 ACCCGCACCCTCGTTCCATAGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAA
* * * *
12723478 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCA
12723534 CTTACTGGGC
Statistics
Matches: 203, Mismatches: 36, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
185 199 0.98
186 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGATA
ACACACAGAGAGGGACCCAATCGATCCCCGACTTGCACATCCAACCCCTCTGCCCAACTGAACAC
CCGCACCCTCGTTCCATAGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAA
Found at i:12723481 original size:26 final size:26
Alignment explanation
Indices: 12723452--12723504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12723442 GTTGACTTAG
12723452 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12723478 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12723504 G
1 G
12723505 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12725055 original size:713 final size:718
Alignment explanation
Indices: 12724207--12725697 Score: 2240
Period size: 715 Copynumber: 2.1 Consensus size: 718
12724197 ATTCCCAGTC
* * * *
12724207 TAAGCAAACGGAGTTCATTCCCATTCCAAGATCGGACCGGACCGAGGGTTCCGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTACGGCAGCACATGCT
*
12724272 GGGCTCGAGCATGTGTTGGTGCTGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGG
65 GGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGG
* *
12724337 AGAACCTGACCGACGACATTGAGGTTCCGGGGATCGGTGGGGCC-AGGGGGTAG-GCGCACACGA
130 AGAACCTGACCGACGACATTGAGGTTCCGGCGATCGGGGGGGCCGAGGGGGT-GTGCGCACACGA
12724400 TGTGCGATGGGTGCTGGTACTTGGCCCCTATATT-GTCCCTCTATCCCTCATCAAACCTC-TAGA
194 TGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGTCCC-CTATCCCTCATCAAACCTCGT-GA
* * *
12724463 ACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTC
257 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTGTGCTACCAGTAGCCATTAAAGTGTC
*
12724527 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAAT
322 AGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATT-GAGTTTTTAGCTGAAT
* * * *
12724591 -TTTGTTGTGCATGCCAAAAAAAATACAAGGATTACATTTACCAAGTTTAGGGCCAAAAC-TCTT
386 GTTT-TTGTACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACACCTT
* *
12724654 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACG
450 T-CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACG
* *
12724719 GGTCGTCTTGCCATCAAACTTCAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
514 AGTCGTCTTGCCATCAAACTTC-ACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCAT
12724784 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCC
578 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCC
* ** ** * *
12724849 ATGGCTTG-TGATCCCGTCCCTCT-GCCGGTGTGGTGCCCGCCCGCCCCGCCCG-CT-C-C-TTT
643 ACGGCTTGCACATCCCGTCCCTCTGGCCGACGTAGTGCCCACCCG-CCCGCCCGCCTGCTCATTT
*
12724908 CGTCGGTTGGCT
707 CATCGGTTGGCT
* *
12724920 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTACGGCAGCACATGCT
* *
12724985 GGGCTC-AGGCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCACCATTGCCGGAGCATCG-CT
65 GGGCTCGA-GCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTC-
* * * * * * *
12725048 GGAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCTCATG
128 GGAGAACCTGACCGACGACATTGAGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACACG
*
12725113 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGTGAA
193 ATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGTCCCCTATCCCTCATCAAACCTCGTGAA
12725178 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTGTGCTACCAGTAGCCATTAAAGTGTCA
258 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTGTGCTACCAGTAGCCATTAAAGTGTCA
*
12725243 GAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATTGAGTTTTTAGCTGAATGT
323 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATTGAGTTTTTAGCTGAATGT
* * * * *
12725308 TTTTGTACATGCCAAGAAAAATACAAGGATCACGTCTACCGAGTTTGGGGCTAAAACACCTTTCA
388 TTTTGTACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACACCTTTCA
* *
12725373 AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
453 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTC
* *
12725438 GTCTTGCCATGAAACTTCACGTTAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAA
518 GTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAA
** *
12725503 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
583 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGC
* *
12725568 TTGCACATCCCGTCTCTCTGGGCGACGTAGTGCCCACCCGCCCGCCCGCCTGCTCATTTCATCGG
648 TTGCACATCCCGTCCCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCCTGCTCATTTCATCGG
12725633 TTGGCT
713 TTGGCT
* * *
12725639 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCA
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTACGGCAGCA
12725698 GGATCAGCAA
Statistics
Matches: 701, Mismatches: 60, Indels: 28
0.89 0.08 0.04
Matches are distributed among these distances:
712 2 0.00
713 155 0.22
714 212 0.30
715 237 0.34
716 26 0.04
717 1 0.00
718 2 0.00
719 66 0.09
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (718 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTACGGCAGCACATGCTG
GGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGA
GAACCTGACCGACGACATTGAGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACACGATG
TGCGATGGGTGCTGGTACTTGGCCCCTATATTGGTCCCCTATCCCTCATCAAACCTCGTGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTGTGCTACCAGTAGCCATTAAAGTGTCAGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATTGAGTTTTTAGCTGAATGTTTT
TGTACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACACCTTTCAAAA
AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
TTGCCATCAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTG
CACATCCCGTCCCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCCTGCTCATTTCATCGGTTG
GCT
Found at i:12726327 original size:536 final size:536
Alignment explanation
Indices: 12725315--12726369 Score: 1563
Period size: 536 Copynumber: 2.0 Consensus size: 536
12725305 TGTTTTTGTA
* * * * *
12725315 CATGCCAAGAAAAATACAAGGATCACGTCTACCGAGTTTGGGGCTAAAACACCTTTCAAAAAAAT
1 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAAT
**
12725380 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
66 TTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
12725445 CATGAAACTTCACGTTAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATT
131 CATGAAACTTCACGTGAAGGCTTAAAGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
12725510 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
196 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
** * * * *
12725575 TCCCGTCTCTCTGGGCGACGTAGTGCCCACCCGCCCGCCCGCCTGCTCATTTCATCGGTTGGCTT
261 TCCCGTCTCTCTAAGCGACGGAGTGCCCACCCGCCCACCCGCCCGCTCATTTCATCAGTTGGCTT
* *
12725640 AAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCAG
326 AAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTCCGGCAGCAGGATCAG
* * * *
12725705 CAACACGCAGAGGGGAACCCGACCAATCCCCGACTTGCGTATCCCGCCCCTCTGGTCGGTTGAGC
391 CAACACGCAGAGGGGAACCCGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGC
12725770 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
456 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
12725835 AGATTTTATAGGTTTG
521 AGATTTTATAGGTTTG
* ** *
12725851 CATGCCAACAAAAATACAAGGATCTCATCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAAT
1 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAAT
*
12725916 TTT-AAAAATCCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
66 TTTAAAAAAT-CCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
12725980 CCATGAAACTTCACGTGAAGGCTTAAAGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCAT
130 CCATGAAACTTCACGTGAAGGCTTAAAGGAACATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
12726045 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
195 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
* * * * * ** * *
12726110 ATCCCGTCTCTCTAATCGGCGGAGTGCCCGCCTGCCCATCCGCCCGCTTGTTTCGTCAGTTGGGT
260 ATCCCGTCTCTCTAAGCGACGGAGTGCCCACCCGCCCACCCGCCCGCTCATTTCATCAGTTGGCT
* * * * ** * * *
12726175 TAGGCATATAGAGTTCATTCCTAGTCTAAGATCGGACTGAATTGAGGGTTCCGGTAGTAGGATCG
325 TAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTCCGGCAGCAGGATCA
* * * * * * *
12726240 GTACCATGCAGAGGGGGACCCGATCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
390 GCAACACGCAGAGGGGAACCCGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
* * *
12726305 CCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACG
455 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
12726370 AAGTTCATTC
Statistics
Matches: 459, Mismatches: 59, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
535 6 0.01
536 453 0.99
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (536 bp):
CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAAT
TTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAAGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
TCCCGTCTCTCTAAGCGACGGAGTGCCCACCCGCCCACCCGCCCGCTCATTTCATCAGTTGGCTT
AAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTCCGGCAGCAGGATCAG
CAACACGCAGAGGGGAACCCGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGC
ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
AGATTTTATAGGTTTG
Found at i:12726374 original size:26 final size:26
Alignment explanation
Indices: 12726337--12726389 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12726327 GTTGACTTAG
* *
12726337 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12726363 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12726389 G
1 G
12726390 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12727276 original size:26 final size:26
Alignment explanation
Indices: 12727240--12727292 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12727230 GTTGACTTAG
* *
12727240 GCATACGGAGTTAATTCTCAGTCTAA
1 GCATAAGGAGTTAATTCCCAGTCTAA
*
12727266 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTAATTCCCAGTCTAA
12727292 G
1 G
12727293 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTAATTCCCAGTCTAA
Found at i:12728137 original size:26 final size:26
Alignment explanation
Indices: 12728107--12728157 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12728097 TTGACTTAGG
12728107 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
* **
12728133 CATACGGTGTTCATTCGTAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
12728158 GATCAGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:12729614 original size:26 final size:26
Alignment explanation
Indices: 12729578--12729630 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12729568 GTTGACTTAG
*
12729578 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12729604 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12729630 G
1 G
12729631 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12731275 original size:896 final size:893
Alignment explanation
Indices: 12728395--12734086 Score: 6925
Period size: 896 Copynumber: 6.4 Consensus size: 893
12728385 AAAGAGCATT
* * *
12728395 TGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
12728460 TCAGCGTAGTGCCCGCCCGCCCGCCCGCCCACGCTCTCATTTTGTCGGTTGGCTTAGGCATACGG
66 CCGGCGTAGT-------CGCCCGCCCG-CC-CG--CTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * *** * * *
12728525 AGTTCCTACCCAGTCTAAGATCAAACCGGTTCGAGGGTTACGGCAGCAGGATCGGCAGCACATAG
120 AGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAG
* * * *
12728590 AGGGGGACCCGGAT-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCCTCAC
185 AGGGGGACCC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGATTGAGC-ACCCGCAC
* * * *
12728654 GCACATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAACAGAGGTCATT
248 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
* * * * *
12728719 -CCAGTCTACGATCGGACCGGATCGAGGGTTACGGCAACACATGCTGGGCTTGGGCATGTGTTGG
313 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGG
* * *
12728783 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCAT
378 TGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCAT
* *
12728848 TGGGGTTCCGGT-GATCGGGGGGCCGGGGGGTGTGCACACATGATGTACGATGGGTGCTGGTACT
443 TGGGGTTCC-GTCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
12728912 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTTGAGAACTCACACCCCCTTAAAGAGCAT
507 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
12728977 TTGAGATTTAACAAGTATGCTGCTAGTAGCCATTAAAGTGTCTAAAATCGGGACACTTTTTTCAA
572 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGACACTTTTTTCAA
* *
12729042 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCACCCAAAAT
636 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
12729107 ACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTGAAAAATCCCGA
701 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGA
* * *
12729172 ACCGTAAAAAGTTTCAAAAACCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACATTACGT
766 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TTACGT
* ** *
12729237 GAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATATCATTGGCACATAGAAATA
830 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
* * * *
12729301 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCTTCTCTCTTG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * **
12729366 CTGACGTAGTGCCCGCCCGCTCACCCGCCCGCTTGTTTCATCGGTTAGCTTAGGCATATAGAGTT
66 CCGGCGTAGT---CGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
12729431 CATTCCTAGTCTAAGATCAGATCGAACTAAGGGTTGTGGCAACAGGATTGGCAGCACGCAGAGGG
124 CATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGG
* ** * * * ** * * *
12729496 GGACCCGGTCGATCCCTAGCTTGTGAAACCAACCCCTCTGGCCGACTGAGCGCCCGCACGCTC-A
189 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGATTGAGCACCCGCACGCTCGT
12729560 TTCTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
254 TTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * * * * *
12729625 TCTAAGATCGGACTGGACCAACGATTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGTCG
318 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG
* * * ** * ** *
12729690 CATTTTTCTTCACCGGGGCACCATCGCCGTAGAATCGTCGGAGAACCTGATCGATGGCATTAGGG
383 CATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGG
* * *
12729755 TTCCGACGATCGGGGGGGCC---GGGTGTGCGCACATGATGTGCAATGAGTGCTGGTACTTGGCC
448 TTCCGTCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
12729817 CTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
512 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * * *
12729882 ATTTTACAGGTTCGCTGGCAGTAGCAATTAAAGTGTCTAAAATGGGACACTTTTTTTAAATAGTC
577 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGACACTTTTTTCAAATGGTC
* * *
12729947 ACAAAATCTTATACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGG
642 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * *
12730012 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGACAAAATTCTAAAAAATCTCGAACCACA
707 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCA
* *
12730077 AAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGC
772 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-ACGTGAAGGC
* ** *
12730142 CTAAGGGACCATTGT-TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATA
836 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
*
12730199 TGAAGATGTGCC-AAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
12730263 CC-GCATGGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATT
66 CCGGCGTAGT---CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * ** * * * * *
12730327 CCCAATCTAAGATCAGACTGAACTGAGGGTTGTGGTAACAGGACCAGCAGCACGTAGAGGGGGAC
128 CCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGAC
* * * * * * *
12730392 CCGATCGATCCCCGACTGGTGCATCCTGCCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCG
193 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGATTGAGCACCCGCACGCTCGTTTCG
* *
12730457 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGGCTAAGCATATAGAGTTCATTCCCAGTCTAA
258 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * *
12730522 GATTGGACCAGACCGTGGGTTACAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTT
323 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTT
*** * * *
12730587 TTCTTCGTTAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGTGACATTGGGGTTCCG
388 TTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * * *
12730652 TCGATCAGGGGCCCGAGGGAGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTCGGCCCTTA
453 TCGATCGGGGGGCCG-GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * *
12730717 TGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCACTTAAAGAGCATTTGATATTT
516 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
12730782 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCAAATGGTCACA
581 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGACACTTTTTTCAAATGGTCACA
* * *
12730847 AAATCTTGTACACTTTGAGTTTTTAGTTGAATTGTTTTT-TGCATGCCAACATAAATACAAGGAT
645 AAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGAT
*
12730911 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAA
709 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
* *
12730976 AAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGACGGCTT
774 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-ACGTGAAGGCTT
* * * **
12731041 AAGGAACTATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
838 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
**
12731097 TGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
12731162 CCGGCGTAGT-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
66 CCGGCGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* *
12731226 AATCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCC-
131 AGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCG
* * *
12731290 AGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-AGCTGAGCACCCGCACGCACGTTTCGT
196 A-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-TTGAGCACCCGCACGCTCGTTTCGT
*
12731354 GGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATAC-GAAGTTCATTCCCAGTCTAA
259 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAA
** * * * *
12731418 GATCGGATTGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGTTGGTGCAGTATTT
323 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTT
* * ** * *
12731483 TTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCTG
388 TTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * * *
12731548 GCGATCGGGTGGGTCGGGGGGTATGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
453 TCGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
12731613 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGATATTTT
517 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
12731678 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTGACAA
582 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGACACTTTTTTCAAATGGTCACAA
* * * *
12731743 AATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACGTACCAACAAAAATACAAGGATCA
646 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * **
12731808 CGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTAAAAAAATCTTGAACCGCAAAAA
711 CGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
*
12731873 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-C--G--GG--T---
776 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTACGTGAAGGCTTAAG
12731928 -GA--A--G---G------CAAGCCATAAAAATGGCATTGGCACACAGAAATA
841 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
* ** *
12731967 TGAAGATGTGCCTGAACCCAAGTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
12732032 TCGGCATAGTGCCCACCCGTCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTGGGCATACGGAGTT
66 CCGGCGTAGT---CGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * ** *
12732097 CATTCCCAGTCTAAGAT-----CGAACC--GGACTG-AG--GCTTG-T-GGCAGCACGTAAAGGG
124 CATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGG
* ** * * *
12732150 GGTCCCGGCCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCTG-TTGAGCACCCGTATGCTC-
189 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GATTGAGCACCCGCACGCTCG
* * * * * * *
12732213 ATTCTGTAGGTTGACTTAAGCATATGGAGCTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA
253 TTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
* * * * * *
12732278 GTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTAGGCTCAGGCATGTGTTGGTACT
317 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCC
* * * ** * *
12732343 GCATTTTTCTTTGCCGGGGCGCCATCGCCAGAGCATCGTCGGAGAACCTGACCGGAGGCATTGGA
382 GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGG
* * * * **
12732408 GTTCCGGCAATCGGGGGGGCCGGAGGGGGAGGTGTTCGCACATGATATATGATGGGTGCTGGTAC
447 GTTCCGTCGATC-GGGGGGCC----GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
12732473 TT-GCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACAACCCCTTAAGGAGCA
506 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
12732537 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGAGACACTTTTTGCA
571 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG-GACACTTTTTTCA
* *
12732602 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAA
635 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * ** *
12732667 TACAAGGATCAGGTCTACCAGGTTTGGTTCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCG
700 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
* * *
12732732 AACCGCAAAAAGGTTT-GAAAATCGTGAAAAATAGAAAATGAGTCGTATTGCCATGAAACTTAAC
765 AACCGCAAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-AC
* *
12732796 GTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
828 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
12732861 A
893 A
* * *
12732862 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTAG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * *
12732927 CCGATGTAATGACTGCCCGCCCGCCCGCCCGCTCGTTTCGTTGATTGGCTTAGGCATACGGAGTT
66 CCGGCGT-A-G--T---CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * *
12732992 CATTCCCAGTATAAGA-AATGACC-AGACCAAAGGTTGCGGCAGTAGGATCGACAACACGCAGAA
124 CATTCCCAGTCTAAGATCA-GACCGA-ACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAG
** * * * * *
12733055 GGGGACCCGATCGATCCCAAGCTTGCGCATCCCACCCTTCTAGCCGGTTGAGCACCCGCATGCTC
187 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGATTGAGCACCCGCACGCTC
12733120 GTTTCGTGGGTTGAC-T-----TA--G-G--CA-T---A---T--G------GAGTTCATTCCCA
252 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
* * * * *
12733159 ATCTAAGATTGGACTGGACCGAGGGTTGCGGCATCACATTCTGGGCTCGGGCATGTGTTGGTGCC
317 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCC
* * * * **
12733224 GTATTTTTCTTCGCTGGGGCACCGTCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTACG
382 GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGG
* * *
12733289 GTTCCGAT-GATCGGGGGGGCGGGGGGGTGTGCGCATATGATGTGCGATGGGTGTTGGTACTTGG
447 GTTCCG-TCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * * *
12733353 CCCTTATATTGGCCCCCTATCCCTCATCGAACCTCAAGAACTCAAACCCGCTTGAAGAGCATTTG
510 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
**
12733418 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGACACTTTTTTCAAATGG
575 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGACACTTTTTTCAAATGG
* * *
12733483 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTCATGCCAAAAAAAATACAG
640 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
12733548 GGATTATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCG
705 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCG
* * *
12733613 CAAAAAGGTTT-GAAAATCGTGAAAAATAGAAAATGAGTCGTATTGCCATGAAACTTAACGTGAA
770 CAAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-ACGTGAA
* *
12733677 GGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
833 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
* *
12733738 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCATCTCTCTGG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
12733803 CTGGCGTAAT-GCCCTCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
66 CCGGCGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
** * * * *
12733867 AGTCTAAGATCAGACC-AGACTGAGGGTTGCAGTAGCAGGATCGGTAGCACGTAGAAGGGGACCC
131 AGTCTAAGATCAGACCGA-ACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC
* * * * *
12733931 GACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCC-AGTTGAGCACCCGTACGCTCGTTTCAT
195 GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-TTGAGCACCCGCACGCTCGTTTCGT
* * *
12733995 GGGTTGACTTTGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
259 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
* ** *
12734060 ATCAGACCAAACCGAGGGTTGAGGCAG
324 ATCGGACCGGACCGAGGGTTGCGGCAG
12734087 TAGGATCGGC
Statistics
Matches: 4147, Mismatches: 517, Indels: 256
0.84 0.11 0.05
Matches are distributed among these distances:
865 3 0.00
866 247 0.06
867 5 0.00
868 162 0.04
869 4 0.00
870 386 0.09
871 41 0.01
872 2 0.00
873 6 0.00
874 7 0.00
875 1 0.00
876 361 0.09
877 107 0.03
878 58 0.01
879 3 0.00
880 1 0.00
881 139 0.03
882 2 0.00
883 2 0.00
886 2 0.00
887 2 0.00
888 1 0.00
889 4 0.00
891 7 0.00
892 317 0.08
893 4 0.00
894 44 0.01
895 481 0.12
896 487 0.12
897 259 0.06
898 105 0.03
899 273 0.07
900 148 0.04
901 68 0.02
902 248 0.06
903 9 0.00
904 2 0.00
905 4 0.00
906 71 0.02
907 71 0.02
908 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCG
ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGATTGAGCACCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
TTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGTCG
ATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
Found at i:12731395 original size:26 final size:26
Alignment explanation
Indices: 12731366--12731418 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12731356 GTTGACTTAG
* *
12731366 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12731392 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12731418 G
1 G
12731419 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12732258 original size:26 final size:26
Alignment explanation
Indices: 12732229--12732284 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
12732219 TAGGTTGACT
* *
12732229 TAAGCATATGGAGCTCATTCCTAGTC
1 TAAGCATACGGAGCTCATTCCCAGTC
*
12732255 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGCTCATTCCCAGTC
12732281 TAAG
1 TAAG
12732285 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGCTCATTCCCAGTC
Found at i:12732717 original size:870 final size:874
Alignment explanation
Indices: 12728395--12734086 Score: 6093
Period size: 895 Copynumber: 6.4 Consensus size: 874
12728385 AAAGAGCATT
* * *
12728395 TGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
12728460 TCAGCGTAGTGCCCGCCCGCCCGCCCGCCCACGCTCTCATTTTGTCGGTTGGCTTAGGCATACGG
66 -CGGCGTAGTGCCCGCCCG-CC-CCCG-CC-CG--CTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * *
12728525 AGTTCCTACCCAGTCTAAGATCAAACCGG-TTCGAGGGTTACGGCAGCAGGATCGGCAGCACATA
124 AGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGCTT---------GGATAGGCAGCACGTA
** * *
12728589 GAGGGGGACCCGGATGATCCCCGGCTTGCGCATCCCA-CCCCTCTGGCCGGTTGAGCGCCCCTCA
179 GAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCAGCCCCTCTGGCC-GTTGAGC-ACCCGCA
* * * *
12728653 CGCACATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAACAGAGGTCAT
241 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
12728718 T-CCAGTCTACGATCGGACCGGATCGAGGGTTACGGCAACACATGCTGGGCTTGGGCATGTGTTG
306 TCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* *
12728782 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC-GACGGC
371 GTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGA-GGC
* * *
12728846 ATTGGGGTTCCGGTGATC-GGGGGGCCGGGGGGTGTGCACACATGATGTACGATGGGTGCTGGTA
435 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
12728910 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTTGAGAACTCACACCCCCTTAAAGAGC
500 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGC
* * * * *
12728975 ATTTGAGATTTAACAAGTATGCTGCTAGTAGCCATTAAAGTGTCTAAAATCGGGACACTTTTTTC
565 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTC
* *
12729040 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCACCCAAA
630 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
12729105 ATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTGAAAAATCCC
695 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCC
* * *
12729170 GAACCGTAAAAAGTTTCAAAAACCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACATTAC
760 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TTAC
* * ** *
12729235 GTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATATCATTGGCACATAGAAAT
824 G-G-AGGC-T-A--G---A---TATG--TGT-CAAGCCATAAAAATGGCATTGGCACACAGAAAT
12729300 A
874 A
* * * *
12729301 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCTTCTCTCTTG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * **
12729366 CTGACGTAGTGCCCGCCCGCTCACCCGCCCGCTTGTTTCATCGGTTAGCTTAGGCATATAGAGTT
66 C-GGCGTAGTGCCCGCCCGC-C-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
12729431 CATTCCTAGTCTAAGATCAGATCGAACTAAGGGTTGTGGCAACAGGATTGGCAGCACGCAGAGGG
128 CATTCCCAGTCTAAGATCAGACCGGACTGA-GGCT-T-------GGATAGGCAGCACGTAGAGGG
* ** * * * * * *
12729496 GGACCCGGTCGATCCCTAGCTTGTGAAACCAACCCCTCTGGCCGACTGAGCGCCCGCACGCTCA-
184 GGACCCGGCCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCG-TTGAGCACCCGCACGCTCAT
*
12729560 TTCTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
248 TTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
12729625 TCTAAGATCGGACTGGACCAACGATTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGTCG
312 TCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG
* * * ** * *
12729690 CATTTTTCTTCACCGGGGCACCATCGCCGTAGAATCGTCGGAGAACCTGATC-GATGGCATTAGG
377 CATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGA-GGCATTGGG
* * *
12729754 GTTCCGACGATCGGGGGGGCC---GGGTGTGCGCACATGATGTGCAATGAGTGCTGGTACTTGGC
441 GTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
12729816 CCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
506 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGA
* * * * *
12729881 GATTTTACAGGTTCGCTGGCAGTAGCAATTAAAGTGTCTAAAAT-GGGACACTTTTTTTAAATAG
571 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGG
* * *
12729945 TCACAAAATCTTATACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAA
636 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * * *
12730010 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGACAAAATTCTAAAAAATCTCGAACCA
701 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCG
* *
12730075 CAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAG
766 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-ACG-G-AG
* ** *
12730140 GCCTAAGGGACCATTGTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATA
828 G-CT-A--GA-TA-TG-TG----T-CAAGCCATAAAAATGGCATTGGCACACAGAAATA
*
12730199 TGAAGATGTGCC-AAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
12730263 CCGCATGGTGCCCGCCCG--CCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCAT
66 CGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
12730326 TCCCAATCTAAGATCAGACTGAACTGAGGGTTGTGGTAACAGGACCAGCAGCACGTAGAGGGGGA
131 TCCCAGTCTAAGATCAGACCGGACTGA-GGCT-TGG--ATA-G----GCAGCACGTAGAGGGGGA
** * * * * * * * *
12730391 CCCGATCGATCCCCGACTGGTGCATCCTGCCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTC
187 CCCGGCCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCG-TTGAGCACCCGCACGCTCATTTC
* **
12730456 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGGCTAAGCATATAGAGTTCATTCCCAGTCTA
251 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* ** * * * * *
12730521 AGATTGGACCAGACCGTGGGTTACAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATT
316 AGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATT
*** * * *
12730586 TTTCTTCGTTAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGTGACATTGGGGTTCC
381 TTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGAGGCATTGGGGTTCC
* * * * *
12730651 GTCGATC-AGGGGCCCGAGGGAGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTCGGCCCT
446 GGCGATCGGGGGGGCCG-GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
12730715 TATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC-ACCCACTTAAAGAGCATTTGATA
509 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCC-CTTAAAGAGCATTTGAGA
* *
12730779 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCAAATGGTC
573 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTC
* * *
12730844 ACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTGTTTTT-TGCATGCCAACATAAATACAAG
638 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAG
*
12730908 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCAC
702 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGC
*
12730973 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGACGG
767 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-ACG-GA-GG
**
12731038 CTTAAGGAACTATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
829 C-T-A-G-A-TA-TG--T-G---T-CAAGCCATAAAAATGGCATTGGCACACAGAAATA
**
12731097 TGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
12731162 CCGGCGTAGT----GCCCG--CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
66 -CGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * ** *
12731221 TTCCCAATCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGG
130 TTCCCAGTCTAAGATCAGACCGGA-C------TGAGGC--TTGGATAGGCAGCACGTAGAGGGGG
* * * * *
12731286 ACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCACGTTT
186 ACCCGGCCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCC-GTTGAGCACCCGCACGCTCATTT
* *
12731351 CGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
250 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * *
12731416 AAGATCGGATTGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGTTGGTGCAGTAT
315 AAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCAT
* * ** * *
12731481 TTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTC
380 TTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGAGGCATTGGGGTTC
* * * * *
12731546 TGGCGATCGGGTGGGTCGGGGGGTATGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTT
445 CGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
12731611 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGATATT
510 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATT
* *
12731676 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTGAC
575 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCAC
* * * *
12731741 AAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACGTACCAACAAAAATACAAGGAT
640 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * **
12731806 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTAAAAAAATCTTGAACCGCAAA
705 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
*
12731871 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-C-G-GG-T-GA-
770 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTACGGAGGCTAGAT
12731930 A-G-G-CAAGCCATAAAAATGGCATTGGCACACAGAAATA
835 ATGTGTCAAGCCATAAAAATGGCATTGGCACACAGAAATA
* ** *
12731967 TGAAGATGTGCCTGAACCCAAGTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
12732032 TCGGCATAGTGCCCACCCGTCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTGGGCATACGGAGTT
66 -CGGCGTAGTGCCCGCCCG-CC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* *
12732097 CATTCCCAGTCTAAGATC-GAACCGGACTGAGGCTT-G-T-GGCAGCACGTAAAGGGGGTCCCGG
128 CATTCCCAGTCTAAGATCAG-ACCGGACTGAGGCTTGGATAGGCAGCACGTAGAGGGGGACCCGG
* * *
12732158 CCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCTGTTGAGCACCCGTATGCTCA-TTCTGTAG
192 CCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCC-GTTGAGCACCCGCACGCTCATTTC-GTGG
* * * *
12732222 GTTGACTTAAGCATATGGAGCTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
255 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
12732287 CGGACTGGACCGAGGGTTGCAGCAGCACATGCTAGGCTCAGGCATGTGTTGGTACTGCATTTTTC
320 CGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
* * * ** * *
12732352 TTTGCCGGGGCGCCATCGCCAGAGCATCGTCGGAGAACCTGACCGGAGGCATTGGAGTTCCGGCA
385 TTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGAGGCATTGGGGTTCCGGCG
* * **
12732417 ATCGGGGGGGCCGGAGGGGGAGGTGTTCGCACATGATATATGATGGGTGCTGGTACTT-GCCCTT
450 ATCGGGGGGGCC----GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
12732481 ATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACAACCCCTTAAGGAGCATTTGAGATT
510 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATT
*
12732546 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGAGACACTTTTTGCAAATGGTCA
575 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGG-GACACTTTTTTCAAATGGTCA
* *
12732610 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGA
639 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * ** *
12732675 TCAGGTCTACCAGGTTTGGTTCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGCAA
704 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAA
* * *
12732740 AAAGGTTT-GAAAATCGTGAAAAATAGAAAATGAGTCGTATTGCCATGAAACTTAACGTGAAGGC
769 AAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-ACG-G-AGGC
* *
12732804 TTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
830 -T-A--GA------TATG--TGT-CAAGCCATAAAAATGGCATTGGCACACAGAAATA
* *
12732862 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTAG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-G
* ** * * * * *
12732927 CCGATGTAATGACTGCCCGCCCGCCCGCCCGCTCGTTTCGTTGATTGGCTTAGGCATACGGAGTT
65 GCGGCGTAGTGCCCGCCCG-CC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * * *
12732992 CATTCCCAGTATAAGAAATGACCAGACCAAAGG-TTGCGGCAGTAGGATCGACAACACGCAGAAG
128 CATTCCCAGTCTAAG--AT---CAGACC---GGACTGAGGC--TTGGATAGGCAGCACGTAGAGG
** ** * * *
12733056 GGGACCCGATCGATCCCAAGCTTGCGCATCCCA-CCCTTCTAGCCGGTTGAGCACCCGCATGCTC
183 GGGACCCGGCCGATCCCCGGCTTGCGCAT-CCAGCCCCTCTGGCC-GTTGAGCACCCGCACGCTC
*
12733120 GTTTCGTGGGTTGAC-T-----TA--G-G--------CA---T----AT--GGAGTTCATTCCCA
246 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
12733159 ATCTAAGATTGGACTGGACCGAGGGTTGCGGCATCACATTCTGGGCTCGGGCATGTGTTGGTGCC
311 GTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCC
* * * * * **
12733224 GTATTTTTCTTCGCTGGGGCACCGTCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTACG
376 GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGAGGCATTGGG
** * * *
12733289 GTTCCGATGATCGGGGGGGCGGGGGGGTGTGCGCATATGATGTGCGATGGGTGTTGGTACTTGGC
441 GTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
12733354 CCTTATATTGGCCCCCTATCCCTCATCGAACCTCAAGAACTCA-AACCCGCTTGAAGAGCATTTG
506 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCC-CTTAAAGAGCATTTG
**
12733418 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAAT-GGGACACTTTTTTCAAATG
570 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATG
* *
12733482 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTCATGCCAAAAAAAATACA
635 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * *
12733547 GGGATTATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACC
700 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACC
* * *
12733612 GCAAAAAGGTTT-GAAAATCGTGAAAAATAGAAAATGAGTCGTATTGCCATGAAACTTAACGTGA
765 GCAAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-ACG-G-
* *
12733676 AGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
826 AGGC-T-A--GA------TATG--TGT-CAAGCCATAAAAATGGCATTGGCACACAGAAATA
* *
12733738 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCATCTCTCTGG
1 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
12733803 CTGGCGTAAT----G-CC-CTCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
66 C-GGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
12733862 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGCAGGATCGGTAGCACGTAGAAGGGG
130 TTCCCAGTCTAAGATCAGACCGGACTGAGGCTTG--G-A-TAGG--C---AGCACGTAGAGGGGG
* * * * * *
12733927 ACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCAGTTGAGCACCCGTACGCTCGTTT
186 ACCCGGCCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCC-GTTGAGCACCCGCACGCTCATTT
* * *
12733992 CATGGGTTGACTTTGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCT
250 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* *** *
12734057 AAGATCAGACCAAACCGAGGGTTGAGGCAG
315 AAGATCGGACTGGACCGAGGGTTGCGGCAG
12734087 TAGGATCGGC
Statistics
Matches: 4122, Mismatches: 511, Indels: 318
0.83 0.10 0.06
Matches are distributed among these distances:
859 2 0.00
860 1 0.00
861 5 0.00
862 1 0.00
863 7 0.00
865 4 0.00
866 255 0.06
867 3 0.00
868 128 0.03
869 4 0.00
870 385 0.09
871 44 0.01
872 2 0.00
874 7 0.00
875 3 0.00
876 366 0.09
877 106 0.03
878 64 0.02
879 1 0.00
881 140 0.03
882 2 0.00
883 3 0.00
884 1 0.00
885 3 0.00
887 3 0.00
888 2 0.00
889 3 0.00
890 2 0.00
891 7 0.00
892 307 0.07
893 5 0.00
894 47 0.01
895 486 0.12
896 471 0.11
897 258 0.06
898 98 0.02
899 253 0.06
900 151 0.04
901 72 0.02
902 237 0.06
903 18 0.00
904 4 0.00
905 5 0.00
906 80 0.02
907 70 0.02
908 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGGACTGAGGCTTGGATAGGCAGCACGTAGAGGGGGACCCGGCCGA
TCCCCGGCTTGCGCATCCAGCCCCTCTGGCCGTTGAGCACCCGCACGCTCATTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCC
GGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGAGGCATTGGGGTTCCGGCGATCGGG
GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTACGGAGGCTAGATATGTGTCAAGC
CATAAAAATGGCATTGGCACACAGAAATA
Found at i:12733603 original size:876 final size:871
Alignment explanation
Indices: 12732258--12734033 Score: 2598
Period size: 876 Copynumber: 2.0 Consensus size: 871
12732248 CCTAGTCTAA
12732258 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTAGG
* * * * **
12732323 CTCAGGCATGTGTTGGTACTGCATTTTTCTTTGCCGGGGCGCCATCGCCAGAGCATCGTCGGAGA
66 CTCAGGCATGTGTTGGTACCGCATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCACCGGAGA
* * *
12732388 ACCTGACCGGAGGCATTGGAGTTCCGGCAATCGGGGGGGCCGGAGGGGGAGGTGTTCGCACATGA
131 ACCTGACCGGAGGCATTCGAGTTCCGACAATCGGGGGGGCC-G-GGGGGAGGTGTGCGCACATGA
* *
12732453 TATATGATGGGTGCTGGTACTTGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
194 TATACGATGGGTGCTGGTACTTGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
12732518 TACAACCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
259 CACAACCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCAA
*
12732583 AATGGAGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTT
324 AATGGAGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTT
* * **
12732648 TTGTGCATGCCAACAAAAATACAAGGATCAGGTCTACCAGGTTTGGTTCCAAAACTCCTTTTGAA
389 TTGTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAA
12732713 AAAATTTTAAAAAATCCCGAACCGCAAAAAGGTTTGAAAATCGTGAAAAATAGAAAATGAGTCGT
454 AAAATTTTAAAAAATCCCGAACCGCAAAAAGGTTTGAAAATCGTGAAAAATAGAAAATGAGTCGT
12732778 ATTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
519 ATTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
*
12732843 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
584 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * *
12732908 GCGCATCCTGTCTCTCTAGCCGATGTAATGACTGCCCGCCCGCCCGCCCGCTCGTTTCGTTGATT
649 GCGCATCCCATCTCTCTAGCCGACGT-A--A-T----GCCCGCCCGCCCGCTCGTTTCGTCGATT
* *
12732973 GGCTTAGGCATACGGAGTTCATTCCCAGTATAAGA-AATGACCAGACCAAAGGTTGCGGCAGTAG
706 GGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATAA-GACCAGACCAAAGGTTGCAGCAGCAG
* * * *
12733037 GATCGACAACACGCAGAAGGGGACCCGATCGATCC-CAAGCTTGCGCATCCCACCCTTCTAGCCG
770 GATCGACAACACGCAGAAGGGGACCCGACCGATCCTC-AGCTTACGCATCCCACCCCTCTAGCCA
* *
12733101 GTTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAG
834 GTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * * *
12733139 GCATATGGAGTTCATTCCCAATCTAAGATTGGACTGGACCGAGGGTTGCGGCATCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTAGG
* * * * * *
12733204 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGCTGGGGCACCGTCACCGGAGCATCACCGGAGA
66 CTCAGGCATGTGTTGGTACCGCATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCACCGGAGA
* ** *
12733269 ACCTGACCGGCGGCATTACG-GTTCCGATGATCGGGGGGG-C-GGGGG-GGTGTGCGCATATGAT
131 ACCTGACCGGAGGCATT-CGAGTTCCGACAATCGGGGGGGCCGGGGGGAGGTGTGCGCACATGAT
* * * * *
12733330 GTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCAAGAACT
195 ATACGATGGGTGCTGGTACTT-GCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
12733395 CA-AACCCGCTTGAA-GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCC
259 CACAACCC-CTT-AAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCC
* * *
12733458 GAAATGG-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
322 AAAATGGAGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTT
* * * *
12733522 TTTTGTTCATGCCAAAAAAAATACAGGGATTATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTG
387 TTTTGTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTTTG
12733587 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGGTTTGAAAATCGTGAAAAATAGAAAATGAGTC
452 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGGTTTGAAAATCGTGAAAAATAGAAAATGAGTC
12733652 GTATTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAA
517 GTATTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAA
12733717 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
582 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
12733782 TTGCGTATCCCATCTCTCTGGCTGGCGTAATGCCCTCCCGCCCGTTCGTTTCGTCGGTTGGCTTA
647 TTGCGCATCCCATCTCTCTAGCCGACGTAATGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTA
* * ** * * **
12733847 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGCAGGATCGGT
712 GGCATACGGAGTTCATTCCCAGTATAAGATAAGACCAGACCAAAGGTTGCAGCAGCAGGATCGAC
* * * * *
12733912 AGCACGTAGAAGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCAGTTGAGCA
777 AACACGCAGAAGGGGACCCGACCGATCCTCAGCTTACGCATCCCACCCCTCTAGCCAGTTGAGCA
* *
12733977 CCCGTACGCTCGTTTCATGGGTTGACTTTG
842 CCCGCACGCTCGTTTCATGGGTTGACTTAG
*
12734007 GCATACGGAGTTCATTCCTAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
12734034 CATACGGAGT
Statistics
Matches: 804, Mismatches: 85, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
868 187 0.23
869 2 0.00
872 1 0.00
873 1 0.00
875 1 0.00
876 362 0.45
877 103 0.13
878 2 0.00
880 1 0.00
881 143 0.18
882 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (871 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTAGG
CTCAGGCATGTGTTGGTACCGCATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCACCGGAGA
ACCTGACCGGAGGCATTCGAGTTCCGACAATCGGGGGGGCCGGGGGGAGGTGTGCGCACATGATA
TACGATGGGTGCTGGTACTTGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
CAACCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCAAAA
TGGAGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTT
GTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAA
AATTTTAAAAAATCCCGAACCGCAAAAAGGTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTAT
TGCCATGAAACTTAACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCATCTCTCTAGCCGACGTAATGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCA
TACGGAGTTCATTCCCAGTATAAGATAAGACCAGACCAAAGGTTGCAGCAGCAGGATCGACAACA
CGCAGAAGGGGACCCGACCGATCCTCAGCTTACGCATCCCACCCCTCTAGCCAGTTGAGCACCCG
CACGCTCGTTTCATGGGTTGACTTAG
Found at i:12734037 original size:26 final size:26
Alignment explanation
Indices: 12734007--12734059 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12733997 GTTGACTTTG
*
12734007 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12734033 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12734059 G
1 G
12734060 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12734228 original size:26 final size:26
Alignment explanation
Indices: 12734192--12734244 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12734182 GTTAACTTAG
*
12734192 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
12734218 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
12734244 G
1 G
12734245 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:12734261 original size:185 final size:185
Alignment explanation
Indices: 12733848--12734265 Score: 581
Period size: 185 Copynumber: 2.3 Consensus size: 185
12733838 GTTGGCTTAG
* * *
12733848 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCA
* * *
12733913 GCACGTAGAAGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCAGTTGAGCAC
66 GCACGCAGAAGGGGACCCGACCGATCCTCGGCTTACACATCCCGCCCCTCTGGCCAGCTGAGCAC
** * * *
12733978 CCGTACGCTCGTTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCTAGTCTAA
131 CCACACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12734033 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTG-AGGCAGTAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCA-GCAGCAGGATCGGC
* * * *
12734097 AGCACGCAG-AGGAGGACCCGACCGATCC-CTGGCTTGCACATCCTGCCCTTCTGGCCGGCTGAG
65 AGCACGCAGAAGG-GGACCCGACCGATCCTC-GGCTTACACATCCCGCCCCTCTGGCCAGCTGAG
* *
12734160 CACCCACATGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
128 CACCCACACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
12734218 GCATACGGAGTTCAATCCCAGTCTAAGATCAAACTGGACCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
12734266 TGACAGCACA
Statistics
Matches: 206, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
184 5 0.02
185 201 0.98
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCA
GCACGCAGAAGGGGACCCGACCGATCCTCGGCTTACACATCCCGCCCCTCTGGCCAGCTGAGCAC
CCACACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12735126 original size:26 final size:26
Alignment explanation
Indices: 12735090--12735140 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12735080 TTTACTTAGG
*
12735090 CATATGGAGTTCATTCCCAGTCTAAA
1 CATATGGAGTTCATTCCCAGCCTAAA
12735116 CATATGGAGTTCATTCCCAGCCTAA
1 CATATGGAGTTCATTCCCAGCCTAA
12735141 GATCGGACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATATGGAGTTCATTCCCAGCCTAAA
Found at i:12735765 original size:896 final size:896
Alignment explanation
Indices: 12734033--12740067 Score: 5452
Period size: 897 Copynumber: 6.7 Consensus size: 896
12734023 CCTAGTCTAA
**
12734033 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGA-GGCAGTAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-ACGGCAGTAGGATCGGC
* * * * * *
12734097 AGCACGCAGAGGAGGACCCGACCGATCCCTGGCTTGCACATCCTGCCCTTCTGGCCGGCTGAGCA
65 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGTCTGAGCA
* * *
12734162 CCCACATGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* ** ** * * *
12734227 GTTCAATCCCAGTCTAAGATCAAACTGGACCGAGGGTTGTGACAGCACATGCTAGGCTCGGGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * * * *
12734292 GTATTGGTGCCGCATTTCTCTTTGTCGGGGCACCGTCGCCGGAGCATCGTCGAAGAAACTGATCA
260 GTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * * * *
12734357 ATGGCAATGGGGATCCGACGATTGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCAATGGGTG
325 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
12734422 CTGGTACTTCGG-CCTGTATATTAGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCGC
390 CTGGTACTT-GGCCCT-TATATT-GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* * *
12734485 TTAAAGAGTATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
452 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
12734550 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
517 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
12734615 CCAACAAAAATACAAGGATCACGTCTCCCAAGTTTGGGGCCAAAAATCCCTCCGAAAAAATTTTA
582 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* ** * *
12734680 AAAAATCTGGAACCATAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCATCTTGCAAT
647 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
12734744 GAAACTTCTCGTGAAGGCTTAAGGGACAATTGGT-TGAATTTACAAGCCATAAAAATGGCATTGG
711 GAAACTTCACGTGAAGGCTTAAGGGACCATT-GTATGAATTTACAAGCCATAAAAATGGCATTGG
** *
12734808 CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
775 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
*
12734873 CCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
840 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *** * * *
12734930 GCATACGGAGTTCATTCCCAGTCTAATAAGGGACTGGACCGAGAGTTACGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATCGGCA
* * * *
12734995 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCTTCCCGCCCATCTAGCCGTCTGAGCAC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGTCTGAGCAC
** * * * *
12735060 ATGCACGCTCGTTTCGTGGGTTTACTTAGGCATATGGAGTTCATTCCCAGTCTAAACATATGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
12735125 TTCATTCCCAGCCTAAGATCGGACTAGACCAAGGGTTGTGGCAGCACATGCTGGGCTAGGGCATC
196 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
12735190 TGTTGGTGCCGCATTTTTTTTCGTCGGGGCACCATCGCCTGAGCATCGTTGGAGAACCTAACCGA
261 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA
* * * *
12735255 CGGCATTGCGGTTCCGACGATCGTGTGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGTGTGC
326 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
12735320 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTTGAGAACTCACACCCCCTTAA
391 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
*
12735385 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACTCTT
456 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
12735450 TTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAA
521 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
** *
12735515 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTGAAACTCCTTCCGAAAAAATTTTAAAAA
586 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
** * * *
12735580 ATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAAGAGAAAACAAGTTGTCTTGCCATGAAAC
651 ATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
12735645 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
716 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
*
12735710 GAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
781 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
** * * **
12735775 CTCTGGTTGGCGTAGTGCCCGCTCGCCCGCCCACTCGTTTCGTTAGTTGGCTTAG
846 CTCTGGCCGACGTAGTG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
12735830 GCATACGGTGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATCGGCA
* * * * * * *
12735895 ACACGTC-GAGGGGGACCC-AGTCAATCCCCGGCTTACGCATCCCGCCCCCCCGGCCGGCTGAGC
66 GCACG-CAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGTCTGAGC
* *
12735958 ACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGG
129 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
12736023 AGTTCTTTCCCAGTGTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
194 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** * *
12736088 TGTGTTGGTGCCGCATTTCTCTTCACCGGGGCACCATCGCTGGAGCGTCGTCGGAGAACCTGACC
259 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
* *
12736153 GACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGAGCGCACATGATGTGCGATGGGC
324 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
** * *
12736217 GCTGGTACTTGGCCCTTATATTGTTCCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTG
389 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
* *
12736282 AAACAACATTTGAGATTTTACAGG-TT--T-CC---AGCC-----A--G--T---A----G-C-C
454 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * *
12736322 --ATTACAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTATCTGAATTTTTTTGTGCTTGCC
519 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
12736385 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAA
584 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
* *
12736450 AAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAATCGAGTCGCCTTGCCATGAA
649 AAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
12736515 ACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
714 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
12736580 CAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
779 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* *
12736645 CTCTCTGGCCGACTTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
844 CTCTCTGGCCGACGTAGT--------GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
12736706 GAATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTATGGC-GCTAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAG-TAGGATCGGC
* ** * * *
12736770 AGCACGTAGAGGCAGACCC-AGTCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGAT-TGAG
65 AGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG-TCTGAG
* * * * *
12736833 CGCCAGCACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACG
128 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * *
12736898 GAGTTCTTTCCCAGTGTAAGATCGGACCAGACCGAAGGTTACGGTAGCACATGCTGGGCTCGAGC
193 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * ** * * * *
12736963 ATGTCTTGGTGCAGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCGTCGCCGAAGAACCTAAC
258 ATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * *
12737028 CGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGAGCGCACATGATGTGCGGTGGG
323 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
12737093 CGCTGGTACTTGGCCCTTATAATGGCCCCTTATCCATCATCAAACCTTGAGAACTCACACCCCCT
388 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
* * *
12737158 TAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACA
453 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
12737223 CTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAATTTTTAGCTGAACTTTTTTGTGCATGC
518 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* **** ** *
12737288 CAATAAAAATACAAGGATCATGTGTCGGTGCTGCACTTTTCTTCACTGGGG-C-ACCAT-C-GCC
583 CAACAAAAATACAAGGATCA-----C-GT-CT--AC-CAAGTT---TGGGGCCAAAAATCCTTCC
** * *** * * **** * *** * *
12737349 G-AAGCATCATCGGAGAACCT-G-ACCGGTGGCATTGGGGTTCCAGCGATCGGGCAGGCCAGGGG
635 GAAAAAAT-TTTAAAAAATCTCGAACC----GCA-AAAAGTTTCAAAAAT----CATG--A---A
*** * * ** ** * * *
12737411 CTGTGTGCACAAATGATGTGCGATGGGTG-C-TGGTACTTGGCCCTTAGATTGGCCCCCTATCCC
685 AAAT-AG-A-AAACGA-GT-CG-T-CTTGCCATGAAACTT--CACGT-GA-AGG----C--T---
**** * * * ** * * *** * ** *
12737474 TCATCAAACC-TCG-A-GAACTCACACCCCCT-TAAA-GAGCATTTGAG-ATTTTACAGGTATGC
730 T-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATG-GCA-TTG-GCA-CGCAGAAATATGA
* * * ** ** *** * *** * * * * *
12737533 TGCTAGTAGCCATTATAGTGTCTGAAATGGGGACACT-TTTTTCAAATGGTCATTG-GCATGCAG
790 AGAT-GT-GCC--TA-A---ACCCACCT-ACCACCCTATCGATC-CA-CGAC-TTGCGCATCCCG
*** * ** * * * * * ***
12737596 -AAATAT-GAAGA--T-GTGCCTAAACCCACCGACCAC-CCTATCGATC-CACGGCTT-G
843 TCTCTCTGGCCGACGTAGTGCC----CGC-CCGCCCGCTCGTTTCG-TCGGTTGGCTTAG
* * ** * * * * * * ** *
12737648 CGCATCCTGTCTCTC-TTACC-GACGT-AG-TGCCCGCCCGCCTGGCCGCCCGCTCATTTCGTCG
1 -GCATACGGAGT-TCATTCCCAGTC-TAAGAT--CAGACCG---GACCG--AG---GGTT--ACG
* *** * * *
12737709 GTCGGCTTAGGCATACGG-AGTTCATTC-CTAGTCTAAGATCAGATCAAACCGAGGGTTGCGGTA
51 G-CAG--TAGG-AT-CGGCAG--CA--CGC-AG----AG-GGGGA-C---CCGA-----CCGATC
* * * * * * * * * * *
12737772 GCAGGATCGGTAGCACATAGAGGCAGACCCGTCTGATCCCTGGCTTGCGCATCCCGC-CCCTC-T
92 CCCGG--C--TTGCGCAT----CCCG-CCCCTCTG--GCC-GTC-TGAGCA-CCCGCACGCTCGT
** * *** * * ** *
12737835 GGCCGACAGAGCACCCGCACGCT-GGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
143 -TTCG--TG-G--GTTG-AC-TTAGG---CATACG--GAGTT---CAT-----------TCCCAG
* * * * * *
12737899 TCTAAGCATACAGAGTTCATTCACAGACTAAGATCGGAACAGACCGAGGGTTGCAGCAACACATG
181 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
*
12737964 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCAT--------C-TC--C
246 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC
* * * *
12738018 GGAGAACCTGA-CTAGTGGCATTAGGGTTTCGAC-ATCGGGGGGGCC-GGGGGGTGTGCGCACAT
311 GGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
12738080 GATGTGC-ACTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTTCGA
375 GATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-GA
12738143 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
438 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
12738208 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
503 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * * * * *
12738273 TTTTTTTGTACAAGCTAACAAAAATACAAGGGTCATGACCATCAAGTTTGGGGCCAAAAATCCTT
568 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
* * * * * *
12738338 CCCAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCATGGAAAATAAAAAACGA
633 CCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
12738403 GTCGTCTTGCCATGAATCTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAA
698 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * *
12738468 AAATGACATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAT
763 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
12738533 GGCTTGCACATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCCACCCGCCCGTTCGTTTCGT
828 GACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--------CCCGCCCGCTCGTTTCGT
*
12738598 CGATTGGCTTAG
885 CGGTTGGCTTAG
* * * * ** *
12738610 ACATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAACAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATCGGCA
* * *** * * * *
12738675 GCACGCAGAAGGGGACCTGGTTGATCCTCGGCTTGTGCATCCCGCCCCTCTGG-CTTGCTAAGCA
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGT-CTGAGCA
* * *
12738739 CCCGCATGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAATCTAAGCATACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
12738804 GTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
195 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * *
12738869 GTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCAGAGGATCG-CAGAGAACCTGACCG
260 GTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * * * * * *
12738933 GCGGCAATGGGGTTTCGACGATCGGAGGAGCC-AGGGGGTGTGCGCACATAATGTGAGATGGGTG
325 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
** *
12738997 CTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTA
390 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* * * *
12739061 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATAAAATGGGCACAAT
455 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
12739126 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTCTGTGCATGCCA
520 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
12739191 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
585 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* *
12739256 AATCACGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
650 AATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * *
12739321 CTTCACGTGAAGGCTTCAGTGAACATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCATGC
715 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* *
12739386 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATC
780 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* *
12739451 TCTCTGGCCGACGTGGTGCCCGCCCGGCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
845 TCTCTGGCCGACGTAGTGCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
12739507 TCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAGCAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATCGGCA
** *
12739572 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCAC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGTCTGAGCAC
* *
12739637 CCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
12739693 ---A-T--C---C----A----ACCAGACCCAGGGTTGCGGCAACACATGCTGGGCTCGGGCATA
196 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* ** *
12739741 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGATAGG
261 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA
* * **
12739806 TGGCATTGGGGTTCCGAC-AGTC-GGGGGGCCGGGGGGGGTGTGCGCAGATGATGTGTAATGGGT
326 CGGCATTGGGGTTCCGACGA-TCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGT
** ** * * *
12739869 GCTGGTGGTTGGAACTTATATTGGCCCCCTATCCCTCCTCTAACCTCGAGAACTCACACCCCCTT
389 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
* *
12739934 AAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
454 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
12739999 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAAATTTTTTGTGCATGCC
519 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
12740064 AACA
584 AACA
12740068 TTTTTTTTTG
Statistics
Matches: 4144, Mismatches: 724, Indels: 563
0.76 0.13 0.10
Matches are distributed among these distances:
871 90 0.02
872 347 0.08
873 46 0.01
874 162 0.04
875 3 0.00
876 339 0.08
877 112 0.03
878 3 0.00
879 1 0.00
880 3 0.00
881 2 0.00
882 1 0.00
883 1 0.00
884 5 0.00
885 2 0.00
887 1 0.00
888 2 0.00
889 1 0.00
891 111 0.03
892 5 0.00
893 1 0.00
895 9 0.00
896 427 0.10
897 521 0.13
898 4 0.00
899 112 0.03
900 330 0.08
901 438 0.11
902 67 0.02
903 1 0.00
904 73 0.02
905 4 0.00
907 3 0.00
909 2 0.00
910 5 0.00
911 6 0.00
912 5 0.00
913 11 0.00
914 4 0.00
915 11 0.00
916 17 0.00
917 8 0.00
920 10 0.00
921 2 0.00
922 1 0.00
925 6 0.00
926 1 0.00
927 2 0.00
928 4 0.00
929 6 0.00
930 8 0.00
931 1 0.00
932 4 0.00
933 2 0.00
934 4 0.00
937 1 0.00
938 3 0.00
939 5 0.00
940 7 0.00
941 15 0.00
942 14 0.00
943 33 0.01
944 18 0.00
945 2 0.00
946 7 0.00
947 7 0.00
948 5 0.00
950 10 0.00
951 15 0.00
952 15 0.00
953 15 0.00
954 9 0.00
955 1 0.00
956 6 0.00
957 10 0.00
958 8 0.00
959 2 0.00
960 15 0.00
961 32 0.01
962 16 0.00
963 15 0.00
964 6 0.00
965 3 0.00
966 5 0.00
967 1 0.00
970 4 0.00
971 3 0.00
972 5 0.00
973 2 0.00
974 7 0.00
975 7 0.00
976 5 0.00
977 2 0.00
979 7 0.00
983 2 0.00
984 10 0.00
986 2 0.00
987 7 0.00
988 16 0.00
989 9 0.00
990 4 0.00
991 10 0.00
992 4 0.00
993 5 0.00
994 5 0.00
995 1 0.00
997 3 0.00
999 7 0.00
1000 223 0.05
1001 13 0.00
1002 27 0.01
1004 2 0.00
1005 1 0.00
1013 103 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATCGGCA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGTCTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
ATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:12736901 original size:26 final size:26
Alignment explanation
Indices: 12736865--12736917 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12736855 GTTGACTTAG
*
12736865 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
*
12736891 GCATACGGAGTTCTTTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
12736917 G
1 G
12736918 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTGTAA
Found at i:12737914 original size:26 final size:26
Alignment explanation
Indices: 12737878--12737930 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12737868 GTTGACTTAG
* * *
12737878 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGACTAA
12737904 GCATACAGAGTTCATTCACAGACTAA
1 GCATACAGAGTTCATTCACAGACTAA
12737930 G
1 G
12737931 ATCGGAACAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGACTAA
Found at i:12738806 original size:26 final size:26
Alignment explanation
Indices: 12738770--12738821 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
12738760 TTGACTTAGC
12738770 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
12738796 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
12738822 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Found at i:12739384 original size:901 final size:889
Alignment explanation
Indices: 12737576--12740067 Score: 3318
Period size: 901 Copynumber: 2.8 Consensus size: 889
12737566 CACTTTTTTC
*
12737576 AAATGGTCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCA
1 AAATGG-CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
** * *
12737641 CGGCTTGCGCATCCTGTCTCTCTTACCGACGTAGTGCCCGCCCGCCTGGCCGCCCGCTCATTTCG
65 CGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCC-CCCGGCCGCCCGCTCGTTTCG
* * * * * * *
12737706 TCGGTCGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAAACCGAGGGTTGCGGT
129 TCGATTGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGT
* * ** * * *
12737771 AGCAGGATCGGTAGCACATAG-AGGCAGACCCGTCTGATCCCTGGCTTGCGCATCCCGCCCCTCT
194 AGCAGGATCAGCAGCACGCAGAAGG-GGACCGGT-TGATCCC-GGCTTGTGCATCCCGCCCCTCT
* *
12737835 GGCCGAC-AGAGCACCCGCACGCTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
256 GGCCG-CTA-AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA
* * *
12737899 TCTAAGCATACAGAGTTCATTCACAGACTAAGATCGGAACAGACCGAGGGTTGCAGCAACACATG
319 TCTAAGCATAC-GAGTTCATTCCCA-ACTAAGATCAG-ACAGACCGAGGGTTGCGGCAACACATG
* *
12737964 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCATC-TC-----CG-GAG
381 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGATCGCGAG
*
12738022 AACCTGACTA-GTGGCATTAGGGTTTCGACATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
446 AACCTGAC-AGGTGGCATTGGGGTTTCGACATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
12738086 CACTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCAC
509 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12738151 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
574 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
12738216 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
639 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
* * * * * * *
12738281 TACAAGCTAACAAAAATACAAGGGTCATGACCATCAAGTTTGGGGCCAAAAATCCTTCCCAAAAA
703 TGCATGCCAACAAAAATACAAGGATCACGACCACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
* * * *
12738346 ATTTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCATGGAAAATAAAAAACGAGTCGTCTT
768 ATTTTAAAAAATCACAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
* * *
12738411 GCCATGAATCTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAA
833 GCCATGAAACTTCACGTGAAGGCTTAAGGGAACACTGTATGAATCTACAAGCCATAA
* * * *
12738468 AAATGACATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAT
1 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** *
12738533 GGCTTGCACATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCCACCCGCCCGTTCGTTTCGT
66 GGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCC-CCCGGCCGCCCGCTCGTTTCGT
* * *
12738598 CGATTGGCTTAGACATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCA
130 CGATTGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTA
*
12738663 ACAGGATCAGCAGCACGCAGAAGGGGACCTGGTTGATCCTCGGCTTGTGCATCCCGCCCCTCTGG
195 GCAGGATCAGCAGCACGCAGAAGGGGACC-GGTTGATCC-CGGCTTGTGCATCCCGCCCCTCTGG
* * *
12738728 CTTGCTAAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAATCT
258 C-CGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
*
12738793 AAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTG
322 AAGCATAC-GAGTTCATTCCCAA-CTAAGATCAGA-CAGACCGAGGGTTGCGGCAACACATGCTG
* *
12738858 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCAGAGGATCGCAGAG
384 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GA-GATCGC-GAG
* * * * * *
12738923 AACCTGACCGGCGGCAATGGGGTTTCGACGATCGGAGGAGCCAGGGGGTGTGCGCACATAATGTG
446 AACCTGACAGGTGGCATTGGGGTTTCGAC-ATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTG
*
12738988 -AGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCA
509 CA-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
12739051 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATAAAA
573 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
12739116 TGGGCACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTCT
638 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-T
* * *
12739181 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
702 GTGCATGCCAACAAAAATACAAGGATCACGACCACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * *
12739246 AATTTTAAAAAATCACGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
767 AATTTTAAAAAATCACAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
* * *
12739311 TGCCATGAAACTTCACGTGAAGGCTTCAGTGAACATTGTATGAATCTACAAGCCATAA
832 TGCCATGAAACTTCACGTGAAGGCTTAAGGGAACACTGTATGAATCTACAAGCCATAA
12739369 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
1 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
** *
12739434 GGCTTGCGCATCCCATCTCTCTGGCCGACGTGGTGCCCG---CCCGGCCGCCCGCTCGTTTCGTC
66 GGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCCCCGGCCGCCCGCTCGTTTCGTC
* * **
12739496 -AGTTGGCTTAGTCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGA-TCGAGGGTTGCGGT
131 GA-TTGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGT
* *** *
12739559 AGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTATGCATCCCGCCCCTCTG
194 AGCAGGATCAGCAGCACGCAGAAGGGGA-CCGGTTGAT-CCCGGCTTGTGCATCCCGCCCCTCTG
* * * *
12739624 GCCGGCTGAGCACCCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCC-A-G
257 GCC-GCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATC
12739687 T---C-TA--AG---A-T-CCAAC------CAGAC---CC-AGGGTTGCGGCAACACATGCTGGG
321 TAAGCATACGAGTTCATTCCCAACTAAGATCAGACAGACCGAGGGTTGCGGCAACACATGCTGGG
* *
12739731 CTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
386 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAG-ATCG-C-GAGA
* * *
12739796 ACCTGATAGGTGGCATTGGGGTTCCGACAGTCGGGGGGCCGGGGGGGGTGTGCGCAGATGATGTG
447 ACCTGACAGGTGGCATTGGGGTTTCGACA-TCGGGGGGCC--GGGGGGTGTGCGCACATGATGTG
* ** ** * *
12739861 TAATGGGTGCTGGTGGTTGGAACTTATATTGGCCCCCTATCCCTCCTCTAACCTCGAGAACTCAC
509 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12739926 ACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
574 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12739991 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAAATTTTTTG
639 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTG
12740056 TGCATGCCAACA
703 TGCATGCCAACA
12740068 TTTTTTTTTG
Statistics
Matches: 1417, Mismatches: 148, Indels: 88
0.86 0.09 0.05
Matches are distributed among these distances:
870 1 0.00
871 80 0.06
872 34 0.02
873 46 0.03
874 156 0.11
875 8 0.01
876 4 0.00
882 1 0.00
883 4 0.00
884 1 0.00
885 1 0.00
888 2 0.00
890 2 0.00
891 371 0.26
892 16 0.01
895 1 0.00
896 3 0.00
897 179 0.13
898 4 0.00
899 2 0.00
900 5 0.00
901 438 0.31
902 58 0.04
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (889 bp):
AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCCCCGGCCGCCCGCTCGTTTCGTC
GATTGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAG
CAGGATCAGCAGCACGCAGAAGGGGACCGGTTGATCCCGGCTTGTGCATCCCGCCCCTCTGGCCG
CTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC
ATACGAGTTCATTCCCAACTAAGATCAGACAGACCGAGGGTTGCGGCAACACATGCTGGGCTCGG
GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGATCGCGAGAACCTGACAG
GTGGCATTGGGGTTTCGACATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGACCACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
ACAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGAACACTGTATGAATCTACAAGCCATAA
Found at i:12740319 original size:312 final size:314
Alignment explanation
Indices: 12739765--12740380 Score: 916
Period size: 312 Copynumber: 2.0 Consensus size: 314
12739755 TTTTCTTCGT
* * * *
12739765 CGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGATAGGTGGCATTGGGGTTCCGACAGTCGG
1 CGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACAGGCGACATTGGGGTTCCGACAGTCGG
* * * ** **
12739830 GGGGCCGGGGGGGGTGTGCGCAGATGATGTGTAATGGGTGCTGGTGGTTGGAACTTATATTGGCC
66 GGGGCC-GAGGGGGTGTGCGCACAAGATGTACAATGGGTGCTGGTACTTGGAACTTATATTGGCC
* *
12739895 CCCTATCCCTCCTCTAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTT
130 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTT
12739960 TGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
195 TGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
12740025 TACACTTCGTGTTTTTAGCTGAAA-TTTTTTGTGCATGCCAACATTTTTTTTTGC
260 TACACTTCGAGTTTTTAGCTAAAATTTTTTTATGCACGCCAACATTTTTTTTTGC
* * * * *
12740079 CGGGGCACCATCGTCGGAGTATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCTGGC-GATCG
1 CGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACAGGCGACATTGGGGTTCCGACAG-TCG
* ***
12740143 AGGGGGCC-AGGGGGTGTGCGCACAAGAT-TACGATGGGTGCTGGTACTTGTCCCTTATATTGGC
65 -GGGGGCCGAGGGGGTGTGCGCACAAGATGTACAATGGGTGCTGGTACTTGGAACTTATATTGGC
*
12740206 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTAGAGGT
129 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGT
* *
12740271 TTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTT
194 TTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
12740336 GTACACTTCGAGTTTTTAGCTAAAATTTTTTTATGCACGCCAACA
259 GTACACTTCGAGTTTTTAGCTAAAATTTTTTTATGCACGCCAACA
12740381 AAAATACAAG
Statistics
Matches: 270, Mismatches: 29, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
312 175 0.65
313 35 0.13
314 53 0.20
315 7 0.03
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (314 bp):
CGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACAGGCGACATTGGGGTTCCGACAGTCGG
GGGGCCGAGGGGGTGTGCGCACAAGATGTACAATGGGTGCTGGTACTTGGAACTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTT
GCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTAAAATTTTTTTATGCACGCCAACATTTTTTTTTGC
Found at i:12740894 original size:26 final size:26
Alignment explanation
Indices: 12740857--12740909 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12740847 GTTGACTTAG
*
12740857 GCATACGGAGTTCATTCCCTA-TCTAA
1 GCATACGAAGTTCATT-CCTAGTCTAA
12740883 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
12740909 G
1 G
12740910 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:12742395 original size:873 final size:865
Alignment explanation
Indices: 12740106--12743541 Score: 4266
Period size: 873 Copynumber: 3.9 Consensus size: 865
12740096 AGTATCGCCG
* * * * *
12740106 GAGAACCTGACCGGCGACATTGGGGTTCTGGCGATCGAGGGGGCCAGGGGGTGTGCGCACAAGAT
1 GAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* *
12740171 -TACGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
66 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
12740235 CACACCCCTTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGA
131 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * **
12740300 AATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAATTTT
196 AATGGGGACACTTTTTTCAAATGATCACAAAATCCTGTACACTTCGAGTTTTTTGC-CGAATTTT
* * *
12740365 TTTATGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGT-CG
260 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCG
* * * *
12740429 AAAAAATTATAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
324 AAAAAATTTTAAAAAATCTCAAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* *
12740494 GTCTTGCCATGAAACTTCATGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAA
389 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
12740559 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGC
454 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
12740624 TTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCTGCCCGCCTGCTCGCCCGCTCGTTTCCTCGG
519 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-AC-CGCCCGCTCATTTCGTCGG
* * ** ** *
12740689 TTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAGGATTGGATTGAACTGAGGGTTGC-AGCAGT
582 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGA-CAG-
* * * * ** * ** *
12740753 C-GGATCAATAGCATGCAGAGTGGGACTCGGTCGATCCTTGGCTTGCGCATCCCGCCATTTTGGC
645 CAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
12740817 CGACTGAGCACCCGCACACCCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCTA-TCT
710 TGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCT
*
12740881 AAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTGCGCCAGCACATGCTG
774 ----A-A-G-A--TCA---C-A--C------CGGA-C---C-GAGGGTTGCGACAGCACATGCTG
* * *
12740946 GGCTC-AGGCATGTGCTGGTGCCGCATTTTTCATT-GCCTGGGCA-CATC-GCCA
813 GGCTCGA-GCATGTGCTGGTGCCACATTTTTC-TTCACCGGGGCACCATCAGCCA
* * * * * * *
12740997 GAGAACCTAACCGGTGGCATTGGGATTTCGACAATCGGGGGGGCCGGGGGGGTGTGCGCACATCA
1 GAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGA
* * * *
12741062 TGTGCGATGGGTGCTGGTGCTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCAAGAGC
65 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
12741127 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTT
130 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
12741192 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTT
195 AAATGGGGACACTTTTTTCAAATGATCACAAAATCCTGTACACTTCGAGTTTTTTGCCGAATTTT
* * *
12741257 TTTTTGCATGCCAAGAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC-A
260 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* ** * *
12741321 AAAAAGTTTTCAAAAATCTCAAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTC
325 AAAAA-TTTTAAAAAATCTCAAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* *
12741386 ATCTTGCCATGAAACTTCACGTGAAGGCTTCAA-GGACCATTGTATGAATTTGCAAGCCATAAAA
389 GTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
12741450 ATGGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATGCACGG
453 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
12741515 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCG-C-CCGCCCGCTCGTTTCGTCAGT
518 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCACCGCCCGCTCATTTCGTCGGT
* * * * *
12741578 TGGCTTAGGCGTACGGATTTCATTCCCAGTCTAAGATCAGACCGGA-TCAAGGGTTGCGAAAGTA
583 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGACAGCA
* ** * * *
12741642 GGATCGGCAGCATGCAGAGGGGGACTTGGCTGATCCTCGACTTGCGCATCCCGCCCCTCTGG-TC
647 GGATCGACAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCT-
* * * *
12741706 GGCTGAGCATCCACACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAA
711 GGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12741771 GATCACACCGGATCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCTTCTGCTGGTGCCACATTT
776 GATCACACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTT
*
12741836 TTCTTCACCGGGACACCATCGCCGGAGCATTGCTA
841 TTCTTCACCGGGGCACCAT---C--AGC----C-A
* *
12741871 GAGAACCTGACCGGCGGCATTGGGGTTCCCACGATC-GGGGGGCCGGGGGGTGTGCGCACATGAT
1 GAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * * *
12741935 GTGCAATGGGTGCTGGTAGTTGGCCCTTATTTTGTCCCCCTATCCCTCATCAAACTTCGAGAACT
66 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
12742000 CACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
131 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
12742065 AATGGGGACACTTTTTTCAAATGATCACAAAATCCTGTACACTTCGAGTTTTTTGCCGAATTTTT
196 AATGGGGACACTTTTTTCAAATGATCACAAAATCCTGTACACTTCGAGTTTTTTGCCGAATTTTT
* * * * *
12742130 TTGTGGATGCCAAAAAAAAATACATGGATCATGTCTACTAAGTTTGGGGCCAAAATTCCTTCCGA
261 TTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
12742195 AAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATTGTGAAATATAGAAAACGAGTCG
325 AAAAATTTTAAAAAATCTCAAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
12742260 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
390 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
12742325 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAGCCCACCAACCACCCAATTGATACACGGCT
455 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
12742390 TGCGCATGCCGTCTCTCTGGCCCGCGTAGTGCCCGCCCGCCCACCAGCCCGCTCATATCGTCGGT
520 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCACC-GCCCGCTCATTTCGTCGGT
* ** * * * *
12742455 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGACCCGAGGGTTGCGGCTGCA
583 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTGCGACAGCA
* * ** ** * * *
12742520 GGATTGACAGCACGCAGAGGCAGACCCGACCGATATTCGGGTTGCGCATCCCACCGCTCTGGCTG
647 GGATCGACAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCTG
*** * * * *
12742585 GCTGAATGCCCGCACACTTGTTTCGTGGGTTGACTTAAGCATACCGAGTTCATTCCCAATCTAAG
712 GCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
12742650 ATCAGACCGGACCGCGGGTTGCGGCAGCAGATGCTGGGCTCGTGCATGTGCTGGTGCCACATTTT
777 ATCACACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTT
* *
12742715 GCTTCATCGGGGCACCATCA-CC-
842 TCTTCACCGGGGCACCATCAGCCA
* * * *
12742737 GAAGAACCTGACCGGCGACATTGGGGTACTGGCGATCGGGGGGGTCGGGGGGGGGGGTGTGCGCA
1 G-AGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGG-C----CGGGGGGTGTGCGCA
* * *
12742802 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCCTCAAACCTTG
60 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
12742867 AGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
125 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
12742932 GTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCCTGTACACTTCGAGTTTTTTGCCGA
190 GTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCCTGTACACTTCGAGTTTTTTGCCGA
* * * * *
12742997 ATTTTTTTGTGGATGCCAAAAAAAAATACATGGATCATGTCTACTAAGTTTGGGGCCAAAATTCC
255 ATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *
12743062 TTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATTGTGAAATATAGAAAAC
319 TTCCGAAAAAATTTTAAAAAATCTCAAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAC
12743127 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
384 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
12743192 AAAAATGGCATTGGCATGTATAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCC
449 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
12743257 ACGGCTTGCGCATCCCGTCTCTCCGGCCAGCGTAGTGCCCGCCAGCCCGTCCGGCCGTTCATTTC
514 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-ACCGCCCGCTCATTTC
* * * *
12743322 GTCGGTTGGCGTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGA
577 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGA
* ** * ** * **
12743387 TAGCAGGATCGGTAGC-TAGCAGTGGGGGACCCGACCGATCC-AAGCTTGTGCATCATGCCCCTC
642 CAGCAGGATCGACAGCAT-GCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTC
* * *
12743450 TGGCTGGCTGAGCACCCGCACACTCGTTTTGAGGGTTGACTTAGGCATACGGAGTTCATTCCTAG
706 TGGCTGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
12743515 TCTAAGATCAGACCAGACCGAGGGTTG
771 TCTAAGATCACACCGGACCGAGGGTTG
12743542 TGGCAGCAAG
Statistics
Matches: 2235, Mismatches: 267, Indels: 106
0.86 0.10 0.04
Matches are distributed among these distances:
861 2 0.00
862 54 0.02
863 5 0.00
866 2 0.00
867 34 0.02
868 7 0.00
869 3 0.00
871 94 0.04
872 249 0.11
873 813 0.36
874 39 0.02
875 3 0.00
876 3 0.00
877 56 0.03
878 185 0.08
879 4 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 1 0.00
887 2 0.00
888 169 0.08
889 2 0.00
891 44 0.02
892 290 0.13
893 171 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (865 bp):
GAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGATCACAAAATCCTGTACACTTCGAGTTTTTTGCCGAATTTTT
TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCTCAAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCACCGCCCGCTCATTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGAT
CGACAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTG
AGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
CACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTT
CACCGGGGCACCATCAGCCA
Found at i:12743669 original size:159 final size:159
Alignment explanation
Indices: 12743318--12743708 Score: 473
Period size: 159 Copynumber: 2.5 Consensus size: 159
12743308 CGGCCGTTCA
* * * * *
12743318 TTTCGTCGGTTGGCGTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* ** * * * * **
12743383 ACGATAGCAGGATCGGTAGCTAGCAGTGGGGGACCCGACCGATCCAAGCTTGTGCATCATGCCCC
66 GCGGCAGCAAGATCGATAGCTAGCAGAGGGGGACCCGACCGATCCAAGCTTGCGCATCACACCCC
**
12743448 TCTGGCTGGCTGAGCACCCGCACACTCGT
131 TCTGGCCAGCTGAGCACCCGCACACTCGT
* *
12743477 TTT-GAGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * ** *
12743541 GTGGCAGCAAGATTGATAGC-ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACC
66 GCGGCAGCAAGATCGATAGCTA-GCAGAGGGGGACCCGACCGAT-CCAAGCTTGCGCATCACACC
* * *
12743605 CCTCTGGCCAGCTGAGCGCCCGTACGCTC-T
129 CCTCTGGCCAGCTGAGCACCCGCACACTCGT
* * * *
12743635 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
12743700 GCGGCAGCA
66 GCGGCAGCA
12743709 CATGCTGGGC
Statistics
Matches: 196, Mismatches: 33, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 1 0.01
158 91 0.46
159 104 0.53
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
GCGGCAGCAAGATCGATAGCTAGCAGAGGGGGACCCGACCGATCCAAGCTTGCGCATCACACCCC
TCTGGCCAGCTGAGCACCCGCACACTCGT
Found at i:12744713 original size:159 final size:158
Alignment explanation
Indices: 12744352--12744716 Score: 457
Period size: 158 Copynumber: 2.3 Consensus size: 158
12744342 GTCCGGCCGG
* * * *
12744352 TCATTTCGTCGGTTGGCGT-AGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
1 TCATTTCGTGGGTTGACTTAAG-CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * **
12744416 GGTTACGATAGCAGGATCGGTAGCTAGCAGTGGGGGACCCGACCGATCCAAGCTTGTGCATCCTG
65 GGTTACGACAGCAAGATCGATAGCTAGCAGAGGGGGACCCGACCGATCCAAGCTTGCGCATCCCA
* *
12744481 CCCCTCTGGCTGGCTGAGCACCCGCACAC
130 CCCCTCTGGCTGACCGAGCACCCGCACAC
* * * *
12744510 TCGTTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGG
1 TCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * **
12744575 GTTGCGGCAGCAAGATCGATAGC-ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
66 GTTACGACAGCAAGATCGATAGCTA-GCAGAGGGGGACCCGACCGAT-CCAAGCTTGCGCATCCC
* *
12744639 ACCCCTCTGG-TCGACCGAGCGCCCGCACGC
129 ACCCCTCTGGCT-GACCGAGCACCCGCACAC
*
12744669 TCATTTCGTGGGTTGACTTAAGCATACGGAGTTCGTTCCCAGTCTAAG
1 TCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAG
12744717 CATACGGAGT
Statistics
Matches: 175, Mismatches: 28, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
157 1 0.01
158 94 0.54
159 80 0.46
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
TCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
GTTACGACAGCAAGATCGATAGCTAGCAGAGGGGGACCCGACCGATCCAAGCTTGCGCATCCCAC
CCCTCTGGCTGACCGAGCACCCGCACAC
Found at i:12744717 original size:26 final size:26
Alignment explanation
Indices: 12744687--12744742 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12744677 TGGGTTGACT
*
12744687 TAAGCATACGGAGTTCGTTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12744713 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12744739 TAAG
1 TAAG
12744743 ATCGGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:12745627 original size:26 final size:26
Alignment explanation
Indices: 12745591--12745641 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12745581 TGACTTAGGC
12745591 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
*
12745617 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12745642 ATCGGGCTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:12746279 original size:899 final size:900
Alignment explanation
Indices: 12744509--12760511 Score: 17725
Period size: 894 Copynumber: 18.0 Consensus size: 900
12744499 CACCCGCACA
** * *
12744509 CTCGTTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* **
12744574 GGTTGCGGCAGCAAGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
66 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * * * * *
12744639 ACCCCTCTGGTCGACCGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCG
131 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
12744704 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCA
196 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * * * * *
12744769 GCACATGCTAGGCTCAGGCATTTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCAG-CGAA
261 GCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATC-GCCGGA
*** * * ** * * *
12744833 GCATCGTTAGAGAACCTAATCGGTGACATTAGGGTTTCGACGATCGGGGGGGCC-GGGGGGTGTG
325 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
* * *
12744897 CGCGTCA-GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAA
390 CGC-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
12744961 CCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
454 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
** *
12745026 AAAGTGTCTGAAACAGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
519 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
*
12745091 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAA
584 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * * * * ** *
12745156 CTCATTCTGAAAAAATTTTACAAAGTCCCAAACCGTAAAAAGTTTCGAAAGCCGTGAAAAATAGA
649 CTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
*
12745221 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAG
714 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
12745286 CCATAAAAATGGCATTGGCATGCAGAAGTATGAAGATGTGCCTCAACCCACCTACCACCCTATCG
779 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * * *
12745351 ATCCACGGCTTGCGCATCCCGTTTCTCTGGTCGGCGGACTGCCTGCCCACCCGTCCA
844 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCG
* * * *
12745408 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGTCCGGACCGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * *
12745473 GGTTGTGGCAGCAGGATCGGCAGAATGCAAAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCC
66 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
** ** * *
12745538 ATCCCTCTGGCCGGCTGAGCGCCTACACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
131 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * ** *
12745603 TTCCCAGTCTAAGTATACGGAGTTCATTCCTAGTCTAAGATCGGGCTAGACCGAGGGTCACGGGA
196 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * * * *
12745668 GCACATGCTGGGCTCGGCCATGTGCTGGTTCCGTATTTTTCTTCACCGGGGCACCATCGCCAGAG
261 GCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGAG
** * * * *
12745733 CATCATCAGAGAACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGT
326 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* *
12745798 GCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACC
391 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
12745863 TCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATTGCCATTAA
456 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * *
12745928 AGTGTCTAAAATCGGGACAC-TTTTTGAAATGGTCATAAAATTTTGTACACTTCGAGTTTTTAGC
521 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * ** *
12745992 TGAACTATTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTATGAAGTTTAGGGCCAAAACT
586 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
12746057 CCTTCTAAAAAAATTTTAAAAAATCACGAATCGCAAAAAGTTTCGAAGATCGTGAAAAATAGAAA
651 CCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
12746122 ACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
716 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
12746187 ATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACTCTATTGAT
781 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
12746252 CCACAGCTTGCGGATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCGGGTTGCCCGCCCG
846 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCC----CGCCCGCCCG
* * * * *
12746311 CTCATTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCTAGTC-AAGATCAGACCAGATCAGG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCGA
** ** * * * ** *
12746375 GGGTTGCGGTCAATAGGATCGATAGCACGTAGAGGGGGACTCAACCGATCCTTGGCTTGCACATC
65 GGGTTGCGG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * * * * *
12746440 CCGCCCCTCTGGCCGGCTAAGCACCCACACGCTCATTTTGTTGGTTGACTTAGGCATACAGAGTT
129 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
12746505 CATTCCCAATCTAAG-AT-C--AG---A-T--C-G-----GAT----------CGAGGGTTGTGG
194 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * * * *
12746544 CAGCACATGCTCGGGCTTGGGCATGTGTTGGTGCCGTATTTCTCTTCGTCGGGGCACCATCGTCG
259 CAGCACATGCT-GGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCG
* * * * *
12746609 GAGCATCGCTGGAG-ACCTGAACCAGAC-GCATTGCGGTTTCTGACGATC-GAGGGG-CTGGGGG
323 GAGCATCGCCGGAGAACCTG-ACC-GACGGCATTG-GGGTTCCGACGATCGGGGGGGCCGGGGGG
* * *
12746670 GTGTGCGCACTTGATGTGCGATGGGTTGGCTTGGTACTTGG-CCTTATAGTGGCTCCCTATCCCC
385 GTGTGCGCACATGATGTGCGATGGG-T-GC-TGGTACTTGGCCCTTATATTGGCCCCCTAT-CCC
* * *
12746734 TCATCAACCCACGAGAACTCCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTTTTGCTT
446 TCATCAAACCTCGAGAACT-CACACCCCCTTAAAGAGCATTTGAGATTTTACAGG---TTTGC-T
* * * ** *
12746799 GCTAAGTAGTCATTAACCGTGTCCAAAAT-GGGACCACTTTTTTC-AATGGTCACAAAATCTTAA
506 GC-CAGTAGCCATTAA-AGTGTCTGAAATGGGGA-CACTTTTTTCAAATGGTCACAAAATCTT-G
* * * *
12746862 TGGCACTTTGAGTTTTTAGTTGAATTTCTTTTGTGCACGCCAACAAAAATACAAGGAT--C--C-
567 T-ACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* *
12746922 A-C---------G-----------TCT-----AA---CAAAAAATCACGAACCGCAAAAAGTTTC
630 ACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
*
12746958 AAAAATCAATGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTTCAGGG
695 AAAAATC-ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC-TTAAGGG
* *
12747022 AACCATTGTTACGAATTAACAAGCCAT-AAAATGGCATTGGCAATGGCAGAAATATGAAGATGTG
758 -ACCATTG-TATGAATTTACAAGCCATAAAAATGGCATTGGC-AT-GCAGAAATATGAAGATGTG
*
12747086 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT
819 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * *
12747151 GCCCGCCCGCCCATCAACCCA
884 GCCTGCCCG-CC--C-GCCCG
* **
12747172 CTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACC-GTACTA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ACCG
* * * * * *
12747235 AGGGTTGCAGTAGCAGGATTGGCAACACGCAGAGGGGGACCC-AGCGATCCCCGGCTTGCGTATC
64 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* ** ** * * *
12747299 CCGTCCCTCTGGCCGATTGAGCTACCGCACGCTCGTTTCATGGGTTGACTTTGGCATACGAAGTT
129 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* ***
12747364 CATTCCCAATCTAAG-AT-C-G-G---A----CAG-----GAT----------CGAGGGTTGTAA
194 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * * * *
12747403 CAGCACATGCTAGGCTCAGGCATGTGTTGGTGTC-TCATTTTTCTTTGCCAGGGCACCAT---C-
259 CAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAT-ATTTTTCTTCGCCGGGGCACCATCGCCG
* * ** * * *
12747463 --G--T---CGGAGAACCTGACTGGCGGCATTATGG-TCCGGCAAT-TGGGGGGCCGGGGGGGTG
323 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
* *
12747519 TGCGCACATGATGTGCGATGGGCGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
388 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
12747584 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTCGCTGCCAGT---CGT
453 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
12747646 TAAAGTGTCTGAAATGAGGATATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGATTTT
518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * **
12747711 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTATCAAGTTTTTGGCCAAA
583 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
12747776 ACTCCTTGC-AAAAAAATTTTAAAAAATCCCAAATCGCAAAAAGTTTCAAAAATCGTGAAAAATA
648 ACTCCTT-CTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
*
12747840 GAAAACAAGTCGTCTTGCCATG-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
712 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * ** * *
12747904 AGTCGTAAAAATGGCATTGGCACACAGAAATAAGAAGATGTGCCGAAACCCACCTACCACCCTAT
777 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * ** *
12747969 CGATCCACTGCTTGCGCATCTCGTCTCTCTAACCAGCGTA--G--TGCCCGCCCG-CC-
842 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCG
* * * * ** *
12748022 CAC----C--C-GTTGGGTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGACC-GAAACGA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGA
* * * * *
12748079 GGGTTGTGGCTGCAGGATAGGCAGCACACAGAGGGGGACCC-AGCCGATCCCTGGCTTGCGCATC
65 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATC
** * ** **
12748143 CCGCCCCTCTGGCTAGCTGAGCACTTGCACGCTCGTTTCGTGGGCCGACTTAGGCATACGGAGTT
129 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* ** ** *
12748208 CATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGTTCTGGACCGAGGGTTGTGG
194 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * * * * *
12748273 CAGCACATGCTAGGCTCGGGCATGTGTTGGGGCCACATTTTTCTTTGTCGGGGCGCCATCGCCGG
259 CAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGG
* * * * * * *
12748338 AGCATCGCTGGA-ATACCTGACAGGCGGCATTAGGGTTCCGGCAATC-GGGGGGCC-AGGGGGTG
324 AGCATCGCCGGAGA-ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
* * *
12748400 TACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-TCCCTATCCCTCATCAA
388 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
** *
12748464 ACCTTAAGAACTCA-AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
453 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
12748528 TAAAGTGTTTGAAATGGGGACACTTTTTTCTAATGGCCACAAAATCTTGTACACTTGGAGTTTTT
518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
12748593 AGCTGAATTTTTTTGTTCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAA
583 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
12748658 ACTCCTT-TCAAAAAAATTTAAAAAAAACCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
648 ACTCCTTCT-AAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* * * * * * * *
12748722 CAAAATGAATAGTCCT-ACATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAA-TTACA
712 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
12748785 AGCCATAAAAATGGCAATTGGCACATGGA-AAATATGAGGGATGTGCCTAAACCCACCTGCCACC
777 AGCCATAAAAATGGC-ATTGG--CATGCAGAAATATGA-AGATGTGCCTAAACCCACCT---ACC
* * * * * *
12748849 ACCCTATCGATCTATGGCTTGCGCATCCCGTCTCTCTGGCTGACGGTAGTGCCCGTCCCGCCTGG
835 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC-GTAGTGCCTG-CCCGCC-CG
12748914 CCC-
897 CCCG
* *
12748917 CTCGGTTTCGTCGGTTGGCTTAGGCATACGGAGTT-TTGCTCCCAGTCTAAGATC-GAACAAGAC
1 CTC-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT--TCCCAGTCTAAGATCAG-ACCAGAC
* * ** * * * ** *
12748980 CGAGGGTTGTGGTAGCAGGATCGATAGCACGTAGAGAGGGACCTGGTCGATCCCCGGCTTACGCA
62 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * *
12749045 TCCCGCCCTTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
127 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
12749110 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTAC
192 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * **** * *
12749175 GACAGCACATGCTGGGCTTGGGCATGTGTTGGTGTTGCATTTTTCTTCACCGGGGCACCATCGTC
257 GGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCC
* * * **
12749240 GGAGCATCGTCGGAGAACCTTACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGAGGGGGG
322 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGG
*
12749305 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATG
386 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
12749370 AAACCTCGAGAACTCACA---CCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
451 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
12749432 ATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTT
516 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
** * * * * *
12749496 TTAGCTGAATTTTTTCATGCATGCCAAAAAAAATACAAGGATCACATGTACCATGTTTGGGGCTA
581 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * ** *
12749561 AAACTCCTTCCAAAAAAATTTAAAAAAATCTCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAAT
646 AAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* ** * *
12749626 AGAAAATGCTTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTAC
711 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* ** * *
12749691 ATGAAATAAAAATGGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
776 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* ** ** *
12749756 TCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTA--G--TGCCCAACTGCCCG
841 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCG
* * * * * *
12749812 GTCGTTTCGTCGATTGGCTTAGGCCATACGAAGTTAATTCCTAGTCTAAGATCGGACCAGACCGA
1 CTCGTTTCGTCGGTTGGCTTAGG-CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * *
12749877 GGGTTGCGGTAGCAGGATCAGAAGCACACAGAGGGGGA-CCTAGCCGATCCCCGGCTTGCGCATC
65 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATC
* * * * * *
12749941 CTGCCCCTCTGGCCAGTTAAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
129 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * ** *
12750006 CATTCCGAGTCTAAGCATACGAAGTTCACTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGG
194 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * *
12750071 CAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCATATTTTTCTTCGTCGGGGCACCATCACCGG
259 CAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGG
* * * *
12750136 AGCATCGCTGGAGAACCTGATCGGCGACATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGTGT
324 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
** * *
12750198 GTTCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAA
389 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
12750263 CCTCAAGAACTCACACCTCCTTAAAGAGTATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATT
454 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
12750328 AAAGTGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
519 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* ** * * *
12750393 GCTGAATTTTTTTGTACACACCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGTGCCAAAA
584 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* ** * * **
12750458 CTCATTCGGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGA
649 CTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
* *
12750523 AAACGAGTTGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
714 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
12750588 CCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCG
779 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
12750653 ATCCACGGCTTGCACATCCCGTCTCTATGGCCGACATAGTGCCCGCCCGCCCGCCCG
844 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCG
** *** * * ** * *
12750710 CTCGTTTCGTCAATTGGCTTAGGCATACGGAGTTCATTTTTAGTATAAGATCGGACTGGATCAAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * ** * *
12750775 AGTTGCAGCAGTAGGATCGGTAGCACACAGAGAGGGACCCGGTCGATCCCCGACTTGCGAATCCC
66 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * *
12750840 GCCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGGCATACGGGGTTC
131 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA-GGCATACGGAGTTC
** * * *
12750905 ATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGC
195 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
* * * * *
12750970 AGCAGATGCTGGGCTCGGGCATTTGTTGGTGCC-TCATTTTTCTTTGTCGGGGCACCATCGTCGG
260 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAT-ATTTTTCTTCGCCGGGGCACCATCGCCGG
* * * * * * *
12751034 AGGATCGCCGGAGAACCTGACCGGCTGCCTTGGGGTTCCGGCGATCGGGGGGACCGGGAGGGGTC
324 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTG
*
12751099 TGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
388 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
12751164 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGTTGCCTGTAGCCAT
453 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
12751229 TAAAGTGTCTAAAAAGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTG
518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
12751294 AGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTAGGGCCAAA
583 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
12751359 ACTCCTTCCAAAAAAATTTAAAAAAATCTCGAACTGC-AAAAGTTTCAAAAATCATGAAAAATAT
648 ACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* * * *
12751423 AAAACAAGTCGTCTTGCCATGGAACTTCACGTGAAGGCTTCAGGGACTATTG--T--ATTTACAA
713 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
12751484 GCCATAAAAAGGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCA-CTACCACCTTATC
778 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
12751548 GATCCACGGCTTTCGCATCCCGTCTCTTTGGCCGGCTTAGTGCCCGCCCGCCCGCCCG
843 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCG
* * * ** ** **
12751606 CTCGTTTTGTCGATTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTAAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * *
12751671 GGTTACGGCAGCAGGATCGGCAGCACACAGAGGGTGACCC-AGTCGATCCCCGGCTTGTGCATCC
66 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCC
* * * *
12751735 AGCCCCTCTGG-C--C--A------G-A---TCAG-ATC----G--GAC-----CAAACCAGAGT
130 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATA-CGGAGT
* * ** *
12751773 TCATTCCAAGTTTAAG-ATCCGACCGGAGTTCATTCTAAGTTTAAGATCGGACCAGACCGAGGGT
193 TCATTCCCAGTCTAAGCAT---A-CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * ** * * *
12751837 TGCAGTAGCACATGCAGGGCTCGAACATGTGTTGGTGCCACATTTTTCTTCACCGAGGCACCAT-
254 TGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATC
* * * * * *
12751901 GCCGGAGCATCGCCAGAGAACCTGACC-AGCGGCGTTAGGGATCTGGCGATCGGGGGGGCC-GGG
319 GCCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* ** * * *
12751964 GGGTGTACGCGTATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCGCTC
383 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
12752029 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
448 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * ** *
12752094 GCCATCAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGTAGTTCGAG
513 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * **
12752159 TTTTTAGCTGAA-TTTTTTGTGCATGACAACAAAAATACAAGGATCATGTCAACCAAGTTTGATG
578 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
** ** * * * **
12752223 CCAAAACTCCTTCGCAAAAAATTTTCTAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAA
643 CCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAA
12752288 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
708 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
12752353 TACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
773 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
12752418 CTATCGATCCACGGCTTGCGCATCCCGTCACTCTGGCCGGCGTAGTGCCCACCCCGCCTGCCCGT
838 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-----CCTGCCCGCCCGC
12752483 CCG
898 CCG
* * * *
12752486 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACTAGATCAAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * *
12752551 GGTTGCGGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATGCC
66 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * * * *
12752616 GCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTCCGTGAGTTGACTTAGGCAGATGGAGTTCA
131 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
12752681 TTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCAGCA
196 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * * *
12752746 GCACATGCTGGGCTCGGGCATGTGTTGGTGTCACATTTTTCTTCGTCGGGGCGCCATCGTCGGAG
261 GCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGAG
* * * * * *
12752811 CATCGTCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATC-AGGGGGCCGAGGGGTTGTGC
326 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* ** * * *
12752875 GCACATGATGTGCAATGGGTGCTGGTAGATGGCCCTTATATTGGCTCCATATCCATCATCAAACC
391 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
12752940 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
456 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
12753005 AGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
521 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
12753069 TAAATTTTTTTGTACATCCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT
586 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* **
12753134 CCTTGC-AAAAAAATTTTGAAAAATCTATAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
651 CCTT-CTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
12753198 AATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGC
715 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * **
12753263 CACAAAAATGGCATTGGCATGTAGAAATTTGAAGATGTGCCTAAACCCACCTTCCACCC-AAGGA
780 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
12753327 T-CACGGCTTGTGCATCCCATCACTCTGGCTGGCGTA--G--T----GCCCGTCCG
845 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCG
* * * * * ** ***
12753374 CTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCACTCCGAGTCTATGATTGGATTGGACCGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
** * * * * * * *
12753439 GGTTATGACAGCAAGATCGGTAGCACACAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCT
66 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * *
12753504 GCCCCTCTGGCCGGCTAAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
131 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
12753569 TTCCCAATCTAAGCATAGGGATTTCATTCCCAGTCTAAGCATACAAAATTCATTCCCAGTCTAAG
196 TTCCCAGTCTAAGC------A--T-A----C-G-----G-------AGTTCATTCCCAGTCTAAG
* * * ** * *
12753634 ATCAGACCGGACCGAGGGTTGCAGCAGCACATGCCAGGCTCGGGCATGTGCTGGTGCCATTTTTT
235 ATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTT
* * * * *
12753699 TCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCTGC
300 TCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
12753764 CGATTGAGGGGGCCGGGGGGGTGTGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
365 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
12753829 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGTA-TTGAGATTTT
430 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
12753893 ACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCAAAA
495 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
12753958 AATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
560 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * * *
12754023 CGTCTACCAAGTTTGGGG-TAAAATCTCTTTCCAAAAAAATTTTAAAAAATCCCGAACAGCATAA
625 CGTCTACCAAGTTTGGGGCCAAAA-CTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAA
* * *
12754087 AGTTTCAAAAAT-AGTGAAAAATATAAAACGAGTCGTCCTGCCATTAAACTTCACGTGAAGGCTT
689 AGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * **
12754151 AAGGGACCATTGTATGAATTTACAAGCCATCAAAATGGCATTGGAACACAGAAATATGAAGATGT
753 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* *
12754216 GCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAG
818 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
12754280 TACCCGCCTGCCCGTCCGCCCGCCCG
883 T----GCCTG--C--CCGCCCGCCCG
* *
12754306 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTAAGATCAGACCGGACCGA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGACCGA
* * * ** ** * *
12754370 GGGTTACGACAGCAAGATCGGCAGCACATAGAGGGGGACCCGGTCGATCCTCGGATTGCGCATCC
65 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
** * * * * * *
12754435 CTTCCCTCTGGCCGGCTGAGTGCCCGTACACTCATTTCGTTGGTTGACTTAGGCATATGGAGTTC
130 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
** * * * * *
12754500 ATTCGTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAAGGTTGCGTC
195 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
* * * * ** * **
12754565 AGCACAAGCTAGGCTCGGGCATGTGCTGGTTCTGTAATTTTCTTCATCGGGGCACCAT-------
260 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGA
* * * *
12754623 -CA---CCGGAGAACCTGACCGGCGACATT-GGGTTACGATGATCGGGGGGGCC-GGGGGGTGTG
325 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
* * *
12754682 CGCACATGATGTGTGGTGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAAC
390 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
12754746 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCTAGTAGCCATTA
455 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
12754811 AAGTGTCTGGAATGGGAACACTTTTTTCAAAAGGTCACAAAATCTTGTAGACTTCGAGTTTTTAG
520 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* **
12754876 CTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTCTACCAAGTTTGGGGCCAAAAC
585 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * **
12754941 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAA
650 TCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
12755006 AACTAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
715 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
12755071 CATAAAAATGGCATTGGCACGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGA
780 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
12755136 TCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCACCCGCCCGCCAACCCG
845 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTG----CCCGCCCG----CCCG
* * * *
12755200 CTTGTTTCGCCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * * *
12755265 GGTTGTGGCAGC-GGAATCGCCAGCACACAGAGGGGGACCAGAGCAATCCTCGGCTTGTGCATCC
66 GGTTGCGGCAGCAGG-ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * *
12755329 CGCCCCTCTGGCCGGCTAAGCGCCCGTACGTTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTC
130 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
** * * *
12755394 ATTCCCAGTCTAAGCATATAGAGTCCATTCCCAGTCTAAGATTGGAGCAGACCGAGGGTTGCGGC
195 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
* * * *
12755459 AGCACATGCTGGGCTCTGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCTGA
260 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGA
* * * * ** *
12755524 TCATCACCGAAGAACCTGACCGACGACATTAAGGTTCCGACGATCGGGGGGGCCAGCGGGGGTGT
325 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGT
* ** *
12755589 GCGCACATGATGTGTGATTTGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAA
389 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
12755654 CCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATT
454 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
12755719 AAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTT
519 AAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * **
12755782 AGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCGAGTTTGGGATCAAA
583 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
12755847 ACTCCTTCCAAAAAAATTTTGAAAAATCTCGAATCGCAAAAAGTTTCAAAATTCATGAAAAATAG
648 ACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* * *
12755912 AAAACGAGTCGCCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAATTACAA
713 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*** *
12755977 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATC
778 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
12756042 GATCCATGGCTTGTGCATCACGTCTCTCTGG-C--CG-A-----------------CG
843 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCG
* *
12756079 -TAGTTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * ** * *
12756142 GGTTGTGACAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCTGATCCCCATCTTGTGCATCCT
66 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * ** * * * *
12756207 GCCCCTCTGGCCAGCTGAGCGCCTGCACATTCATTTCATGGGATGACTTAGGCGTACGGAGTTCA
131 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
12756272 TTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAAACCCAGGGTTGTGGCA
196 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * ** ** *
12756337 GGACATGCTGGGCTCGGGCATGTGCTGGTGCGC--ATTTTTCTTCGCCGACGCACTGTCGTCGGA
261 GCACATGCTGGGCTCGGGCATGTGTTGGTGC-CATATTTTTCTTCGCCGGGGCACCATCGCCGGA
* *
12756400 GCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATC-GGGGGGCCGGGGGGGTGTG
325 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
12756464 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
390 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
12756529 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-TCGCCAGTAGCCATT
455 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATT
* * *
12756593 AAAGTGTCCT-AAAT-GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACATTTCAAGTTTTT
519 AAAGTGT-CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* ** * * *
12756656 AGTTGAATTTTTTTGTGCACCCCTACAAAAATACAAGGATCACGTCTAACAAGTTTAGGGCCAAA
583 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * *
12756721 ACACCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATTAAAAATAG
648 ACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* *
12756786 AAAACGAGTTGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
713 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
12756851 GCCATAAAAATGGCATTGGGACGCAGAAATATTAAGATGTGCCTAAGCCCACCTACCACCCTATC
778 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
*
12756916 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--T----GCCCGCCCG
843 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCG
*
12756966 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * ** * * *** * * * *
12757031 GGTTGCGACAGCAGGATCAGCAGCATACAGAGGAGGACCCAATTAATCCACAGCTTGTGCATCCT
66 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* *
12757096 GCCCCTCTGGCCAGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
131 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
12757161 TTTCCAGTCTAAGCATAGGGAGTTCATTCCCAGTCTAAGCATACGAAATTCATTCCCAGTCTAAG
196 TTCCCAGTCTAAGC------A--T-A----C-G-----G---A-G---TTCATTCCCAGTCTAAG
* * *
12757226 ATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCATATTTT
235 ATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTT
* * * * *
12757291 TCTTCGCTGGGGCAGCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCTGC
300 TCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
12757356 CGATTGAGGGGGCC-GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
365 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
12757420 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGC-CACACCCCCTTAAAGAGTATTTGAGATGT
430 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-CTCACACCCCCTTAAAGAGCATTTGAGATTT
12757484 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
494 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
12757549 AAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATC
559 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
12757614 ACGTCTACCAACTTTAGGGCCAAAACTCCTT-TCAAAAAAATTTTAAAAAATCTTGAATCGCAAA
624 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAAATTTTAAAAAATCTCGAACCGCAAA
* * * *
12757678 AGGTTTCAAAAATCGTGAAAAATAGGAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTT
688 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *** *
12757743 AAGGGACCATTGTATGAATTTACAAGCAAGAAAAATGGCATTGGCACATAGAAACATGAAGATGT
753 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * * *
12757808 GCCTAAACTCACCTACCACCCTATCGATCCACGGTTTGCGCATCTCGTCTCTCTGGCTGACGTAG
818 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
*
12757873 TGCCTGGCCGCCCGCCCG
883 TGCCTGCCCGCCCGCCCG
* * * *
12757891 CTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAATCTAAGATC-GAACC-GAACCG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ACCG
* * * * * * * * * * ** * *
12757954 AAGCTTGTGACAGTAAGATTGGCAGCACGTAGAGAGGGACCTGGTCGATCCCCAGCTTAC-CATC
64 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * *
12758018 CCGCCCCTTTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
129 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * *
12758083 TATTGCTAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTA
194 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C--
* * * ** *
12758148 AGATTAGATCGGACCCAGGGATAG-GGTAGCACATGCTGGGCTCAAGCATGTGCTGGTGCGCAT-
243 -------A---GACCGAGGG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGC-CATA
* * * * * *
12758211 TTTTT-TTCACCGGGGCACCGTCGCTGGAGCATCACCAGAGAACCTGACCGGCGGCATTGGGGTT
296 TTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG-T
* * *
12758275 TTCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCC
360 TCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
12758339 CTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
425 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
12758404 ATTTTACAGATTTGTTGCCAGTAGCCATTAAAGTGTCTTAAATGGTGACACTTTTTTCAAATGGT
490 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
12758469 CACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCTACAAAAATACAAG
555 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * *
12758534 GATCACCTCTACCAAGTTTGGGGCCAAAACT-CTTTTGAAAAAATTTTAAAAAATCTCGAACCAC
620 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGC
* *
12758598 AAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
685 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
12758663 CTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATTAAGA
750 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
12758727 TGTGCCTAAGCCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
815 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
*
12758792 TAGTGCCAGCCCGGCCGCCCGACCGCCCG
880 TAGTGCCTG--C--CCG--C--CCGCCCG
* * * **
12758821 CTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCATACCAGACTAAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
** *
12758886 GGTTGCGATAGCAGGATCGGCAGCACACAGAGGGGGA--C--CCGA---------T-CG-A----
66 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* *
12758932 ---------------T-----CCC-CACGCTCGTTTCGTGGTTTGACTTAGGCATACAGAGTTCA
131 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * *
12758976 TTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGAGTTGCAGTA
196 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * ** * * *
12759041 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCTCCGTCGCCTGAG
261 GCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGAG
* * *
12759106 AATCGTCGGAGAACCTGACCGACGGCA------TT--G--GA-------------GGGGGTTTGC
326 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* *
12759148 GCACATCATGTGCGATGGGTG-TAGGTACTTGGCCCTTATATTAGCCCCCTATCTCC-CATCAAA
391 GCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAA
* * *
12759211 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTATCCATT
454 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
12759276 AGAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAG---TT-
519 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * * *
12759337 -C----------T-T--A-GCCTACAAAAATACAAGGATCGCATCTA-AAATGTTCGGGGACAAA
584 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAA
* ** * * *
12759386 ACTCCTGCCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
648 ACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
*
12759451 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAA
713 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
12759516 GCCATAAAAATGGCATTGGC-TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
778 GCCATAAAAATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
** * * * *
12759580 CGATCCACGGCTTGCGCATCCTATATCTCT-GACGACATAGTGCCCGCCTATCCGCCCGCCCGCC
842 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCC--T--GCCCGCCCGCC
12759644 CG
899 CG
* *
12759646 CTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACTGA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGA
* * * *
12759710 GGGTTACGGCAGCAGGATC-GTAGCACGCAGAGGGGGACCCGACCGATTCCCGGCTTGCCCATCC
65 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * * * *
12759774 TGCCCCTCTGGCCGGCTGAACGGCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
130 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
12759839 ATTCTCAGTCTAGGCATACGGAGTTCATTCCCAGTATAAGATTGGACCGGACCGAGGGTTGCGGC
195 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
* * * * *
12759904 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACAATTTTCTTCGTCGAGGCACCATCGCCAGA
260 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGA
* * * **
12759969 GCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCAACGATCAAGGGGGCCGGAGGGGGGTG
325 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGGGGGTG
* * *
12760034 TGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATGTTGGCCCTCTATCCCTCATCAA
388 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
12760099 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
453 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
12760164 TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTT
518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
12760229 AGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACAAAGTTT-GGGCCAAA
583 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AA
* * * * * *
12760293 AACTCCTTCTGAAAAAATTTTTAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATA
647 AACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* * *
12760358 GAAAACAAGTCGACTTGACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
712 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
12760423 AGCCATAAAAATGTCATTGGCATGTAGAAATATGAAGATGTGCCT-AACCCACCTACC-CCGTA-
777 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
12760485 CGATCCACGGCTT-CGCATCTCGTCTCT
842 CGATCCACGGCTTGCGCATCCCGTCTCT
12760512 NNNNNNNNNN
Statistics
Matches: 12900, Mismatches: 1661, Indels: 1081
0.82 0.11 0.07
Matches are distributed among these distances:
823 2 0.00
824 56 0.00
825 214 0.02
826 81 0.01
827 2 0.00
828 5 0.00
829 6 0.00
831 30 0.00
832 21 0.00
833 19 0.00
834 25 0.00
835 1 0.00
836 1 0.00
837 5 0.00
838 5 0.00
839 5 0.00
840 2 0.00
842 34 0.00
843 285 0.02
844 106 0.01
845 13 0.00
846 36 0.00
847 11 0.00
848 6 0.00
850 3 0.00
851 3 0.00
852 1 0.00
853 1 0.00
855 8 0.00
856 5 0.00
857 72 0.01
858 59 0.00
859 136 0.01
860 120 0.01
861 153 0.01
862 33 0.00
863 8 0.00
864 204 0.02
865 98 0.01
866 42 0.00
869 82 0.01
870 344 0.03
871 2 0.00
872 51 0.00
873 129 0.01
874 461 0.04
875 62 0.00
876 64 0.00
877 248 0.02
878 64 0.00
879 112 0.01
880 195 0.02
881 129 0.01
882 274 0.02
883 8 0.00
884 23 0.00
885 7 0.00
886 3 0.00
887 55 0.00
888 227 0.02
889 366 0.03
890 119 0.01
891 101 0.01
892 46 0.00
893 497 0.04
894 903 0.07
895 49 0.00
896 187 0.01
897 187 0.01
898 221 0.02
899 650 0.05
900 152 0.01
901 149 0.01
902 444 0.03
903 485 0.04
904 420 0.03
905 236 0.02
906 226 0.02
907 87 0.01
908 544 0.04
909 129 0.01
910 1 0.00
911 2 0.00
912 2 0.00
913 1 0.00
914 184 0.01
915 435 0.03
916 217 0.02
917 348 0.03
918 2 0.00
919 2 0.00
921 2 0.00
922 93 0.01
923 180 0.01
924 384 0.03
925 108 0.01
926 7 0.00
928 1 0.00
930 89 0.01
931 1 0.00
932 185 0.01
933 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
GCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGAG
CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCTAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCG
Found at i:12748233 original size:26 final size:26
Alignment explanation
Indices: 12748196--12748248 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12748186 GCCGACTTAG
*
12748196 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12748222 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12748248 G
1 G
12748249 ATCGTTCTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12749136 original size:26 final size:26
Alignment explanation
Indices: 12749100--12749152 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12749090 GTTGACTTAG
*
12749100 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12749126 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12749152 G
1 G
12749153 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12750031 original size:26 final size:26
Alignment explanation
Indices: 12749994--12750046 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12749984 GTTGACTTAG
* * *
12749994 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
12750020 GCATACGAAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
12750046 G
1 G
12750047 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:12751812 original size:29 final size:29
Alignment explanation
Indices: 12751769--12751825 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
12751759 GACCAAACCA
12751769 GAGTTCATTCCAAGTTTAAGATCCGACCG
1 GAGTTCATTCCAAGTTTAAGATCCGACCG
* *
12751798 GAGTTCATTCTAAGTTTAAGATCGGACC
1 GAGTTCATTCCAAGTTTAAGATCCGACC
12751826 AGACCGAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (29 bp):
GAGTTCATTCCAAGTTTAAGATCCGACCG
Found at i:12753584 original size:26 final size:26
Alignment explanation
Indices: 12753555--12753611 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
12753545 GTTGACTTAG
*
12753555 GCATATGGAGTTCATTCCCAATCTAA
1 GCATAGGGAGTTCATTCCCAATCTAA
* *
12753581 GCATAGGGATTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAATCTAA
12753607 GCATA
1 GCATA
12753612 CAAAATTCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAATCTAA
Found at i:12753620 original size:26 final size:26
Alignment explanation
Indices: 12753565--12753633 Score: 93
Period size: 26 Copynumber: 2.7 Consensus size: 26
12753555 GCATATGGAG
* *** *
12753565 TTCATTCCCAATCTAAGCATAGGGAT
1 TTCATTCCCAGTCTAAGCATACAAAA
12753591 TTCATTCCCAGTCTAAGCATACAAAA
1 TTCATTCCCAGTCTAAGCATACAAAA
12753617 TTCATTCCCAGTCTAAG
1 TTCATTCCCAGTCTAAG
12753634 ATCAGACCGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (26 bp):
TTCATTCCCAGTCTAAGCATACAAAA
Found at i:12754031 original size:915 final size:917
Alignment explanation
Indices: 12751796--12760511 Score: 9394
Period size: 908 Copynumber: 9.7 Consensus size: 917
12751786 AAGATCCGAC
** * * * * * *
12751796 CGGAGTTCATTCTAAGTTTAAGATCGGACCAGACCGAGGGTTGCAGTAGCACATGCAGGGCTCGA
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* * * * * * *
12751861 ACATGTGTTGGTGCCACATTTTTCTTCACCGAGGCACCAT-GCCGGAGCATCGCCAGAGAACCTG
66 GCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* * * * * * * ** *
12751925 ACC-AGCGGCGTTAGGGATCTGGCGATCGGGGGGGCC-GGGGGGTGTACGCGTATGATGTGTGAT
131 ACCGA-CGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
12751988 GGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCGCTCATCAAACCTCGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
12752053 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAAATAGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
** *
12752118 ACACTTTTTTCAAATGGTCACAAAATCTTGTGTAGTTCGAGTTTTTAGCTGAA-TTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * **
12752182 TGACAACAAAAATACAAGGATCATGTCAACCAAGTTTGATGCCAAAACTCCTTCGC-AAAAAATT
390 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAAATT
** * * * **
12752246 TTCTAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
454 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
12752311 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
12752376 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
584 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
12752441 CCCGTCACTCTGGCCGGCGTAGTGCCCACCCCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTT
649 CCCGTCTCTCTGGCTGGCGTAGTG-------C-CC-G--C--CCGCTCATTTCGTCGGTTGGCTT
* * * * * *
12752506 AGGCATACGGAGTTCATTCCCAGTATAAGATCAGACTAGA-TCAAGGGTTGCGGCAGTAGGATTG
701 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGACAGCAGGATCG
* * * * *
12752570 GCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATGCC-GCCCCTCTGGCCAGCTGA
765 GCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCAT-CCTGCCCCTCTGGCCGGCTAA
* * *
12752634 GCACCCGCACGCTCGTTCCGTGAGTTGAC-T-----TA--G-G------------C--AG-AT-G
829 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAG
12752674 GAGTTCATTCCCAGTCTAAGCATA
894 GAGTTCATTCCCAGTCTAAGCATA
* * *
12752698 TGGAGTTCATTCCCAGTCTAAGATC-GAACCAGATCGAGGGTTGCAGCAGCACATGCTGGGCTCG
1 CGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCG
* * * * **
12752762 GGCATGTGTTGGTGTCACATTTTTCTTCG-TCGGGGCGCCATCGTCGGAGCATCGTCGGAGAACC
65 GGCATGTGCTGGTGCCACATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATCACCGGAGAACC
* * * * *
12752826 TAACCGGCGGCATTGGGGTTCCGACGATC-AGGGGGCCGAGGGGTTGTGCGCACATGATGTGCAA
129 TGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
** * * * *
12752890 TGGGTGCTGGTAGATGGCCCTTATATTGGCTCCATATCCATCATCAAACCTTGAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
12752955 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
12753019 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTAC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
12753084 ATCCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTGCAAAAAAATT
389 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* ** *
12753149 TTGAAAAATCTATAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCC
454 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
12753214 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCACAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * ** *
12753279 GCATGTAGAAATTTGAAGATGTGCCTAAACCCACCTTCCACCC-AAGGAT-CACGGCTTGTGCAT
584 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
12753342 CCCATCACTCTGGCTGGCGTAGTGCCCGTCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGT
649 CCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * ** *** * ** * *
12753407 TCACTCCGAGTCTATGATTGGATTGGACCGAGGGTTATGACAGCAAGATCGGTAGCACACAGAGG
714 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGGCAGCACACAGAGG
* *
12753472 GGGACCCAACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCATGCTCG
779 GGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCG
* *
12753537 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATAGGGATTTCATTCCCAG
844 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA-GGAGTTCATTCCCAG
12753602 TCTAAGCATA
908 TCTAAGCATA
** * **
12753612 CAAAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCCAGGCTCGG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
**
12753677 GCATGTGCTGGTGCCATTTTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
66 GCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* * * * *
12753742 ACCGACGACATTGGGGTTCTGCCGATTGAGGGGGCCGGGGGGGTGTGCGCGCATGATGTGCGATG
131 ACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
12753807 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCC
196 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
12753872 CTTAAAGAGTA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAATGGGGA
261 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
12753936 CACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGCAT
326 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
12754001 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-TAAAATCTCTTTCCAAAAAAATTT
391 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTCCAAAAAAATTT
* * * * *
12754065 TAAAAAATCCCGAACAGCATAAAGTTTCAAAAAT-AGTGAAAAATATAAAACGAGTCGTCCTGCC
455 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCC
* *
12754129 ATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATCAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
12754194 GAACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCAT
584 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
**
12754259 CCCGTCTCTCTGGCGACGTAGTACCCGCCTGCCCGTCCGCCCGCCCGCTCATTTCGTCGGTTGGC
649 CCCGTCTCTCT-G-G-C-T-G-----G-C-G-TAGT--GCCCGCCCGCTCATTTCGTCGGTTGGC
* * * *
12754324 TTAGGCATACGGAGTTCATTCCCTA-TCTAAGATCAGACCGGACCGAGGGTTACGACAGCAAGAT
699 TTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGAT
* ** * *
12754388 CGGCAGCACATAGAGGGGGACCCGGTCGATCCTCGGA-TTGCGCATCCCT-TCCCTCTGGCCGGC
763 CGGCAGCACACAGAGGGGGACCCGACCGATCC-CCGACTTGCGCAT-CCTGCCCCTCTGGCCGGC
* * * * * * *
12754451 TGAGTGCCCGTACACTCATTTCGTTGGTTGACTTAGGCATATGGAG----TT--C-AT-T---C-
826 TAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCA
12754504 -----G-----T---AGTCTAAGCATA
891 TAGGAGTTCATTCCCAGTCTAAGCATA
* * * *
12754518 CGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAAGGTTGC-GTCAGCACAAGCTAGGCTCG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCG
* *** * *
12754582 GGCATGTGCTGGTTCTGTAATTTTCTTC-ATCGGGG---CA----C----CATCACCGGAGAACC
65 GGCATGTGCTGGTGCCACATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATCACCGGAGAACC
* * * * * * *
12754635 TGACCGGCGACATT-GGGTTACGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGG
129 TGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
12754698 TGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTTGAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
12754762 CCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGGAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
12754827 AACACTTTTTTCAAAAGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTGTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
**
12754892 ATGCCAACAAAAATACAAGGATCTTGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
389 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* ** *
12754957 TTAAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCC
454 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
12755022 ATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
12755087 GCACGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCAT
584 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
12755152 CCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCACCCGCCCGCCAACCCGCTTGTTTCGCCGGTTGG
649 CCCGTCTCTCTGGCTGGCGTAGTGCCCG----CCCG--C-TC-A--------TTTCGTCGGTTGG
* * *
12755217 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGCAGC-GGAA
698 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGG-A
* * * * * * * *
12755281 TCGCCAGCACACAGAGGGGGACCAGAGCAATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCT
762 TCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCT
* * * *
12755346 AAGCGCCCGTACGTTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC--
827 AAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCAT
12755409 ---A--T-A-T---AG----AG--T-
892 AGGAGTTCATTCCCAGTCTAAGCATA
** * * * *
12755418 C------CATTCCCAGTCTAAGATTGGAGCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCTG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* * * *
12755477 GCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCTGATCATCACCGAAGAACCTG
66 GCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* ** * * *
12755542 ACCGACGACATTAAGGTTCCGACGATCGGGGGGGCCAGCGGGGGTGTGCGCACATGATGTGTGAT
131 ACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGAT
** *
12755607 TTGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
12755672 CCTTAAAGAGAATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGG
*
12755736 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTAAATTTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * **
12755800 ATGCCAAAAAAAATACAAGGATCATGTCTACCGAGTTTGGGATCAAAACTCCTTCCAAAAAAATT
389 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * *
12755865 TTGAAAAATCTCGAATCGCAAAAAGTTTCAAAATTCATGAAAAATAGAAAACGAGTCGCCTTGCC
454 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
12755930 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
12755995 GCACATAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCATGGCTTGTGCAT
584 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
12756060 CACGTCTCTCTGGC---CG-A---------CG-T-AGTTT-GTCGGTTGGCTTAGGCATACGGAG
649 CCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCTCA-TTTCGTCGGTTGGCTTAGGCATACGGAG
* **
12756109 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGATCGGCAGCACGTAGAG
713 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGGCAGCACACAGAG
* * * * * * **
12756174 GGGGACCCGGCTGATCCCC-ATCTTGTGCATCCTGCCCCTCTGGCCAGCTGAGCGCCTGCACATT
778 GGGGACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCT
* * * * * *
12756238 CATTTCATGGGATGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCT
842 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA-GGAGTTCATTCCC
12756303 AGTCTAAG-AT-
906 AGTCTAAGCATA
** *
12756313 C-GA----A----C---C----A--A-A-C---CC-AGGGTTGTGGCAGGACATGCTGGGCTCGG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* * ** ** * * *
12756354 GCATGTGCTGGTG-CGCATTTTTCTTCGCCGACGCACTGTCGTCGGAGCATCGCCAGAGAACCTG
66 GCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
*
12756418 ACCGACGGCATTGGGGTTCCGATGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
131 ACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
12756482 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
196 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
12756547 CTTAAAGAGCATTTGAGATTTTACAGGTTTG-TCGCCAGTAGCCATTAAAGTGTCCT-AAAT-GG
261 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGT-CTGAAATGGG
* * * *
12756609 GACATTTTTTTCAAATGGTCACAAAATCTTGTACATTTCAAGTTTTTAGTTGAATTTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
** * * * * **
12756674 ACCCCTACAAAAATACAAGGATCACGTCTAACAAGTTTAGGGCCAAAACACCTTCTGAAAAAATT
389 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* *
12756739 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTTGTCTTGCC
454 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
12756804 GTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
12756869 GGACGCAGAAATATTAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
584 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
12756934 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
649 CCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
* *
12756999 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCAGCAGCATACAGAGG
714 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGGCAGCACACAGAGG
* * *** * * * *
12757064 AGGACCCAATTAATCCAC-AGCTTGTGCATCCTGCCCCTCTGGCCAGCTTAGCGCCCGCACGCTC
779 GGGACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTC
* *
12757128 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATAGGGAGTTCATTCCCA
843 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA-GGAGTTCATTCCCA
12757193 GTCTAAGCATA
907 GTCTAAGCATA
* * *
12757204 CGAAATTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* * * *
12757269 GCATGTGTTGGTGTCATATTTTTCTTCGCTGGGGCAGCATCGCCGGAGCATCACCGGAGAACCTG
66 GCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* * * *
12757334 ACCGACGGCATTGGGGTTCTGCCGATTGAGGGGGCC-GGGGGGTGTACGCACATGATGTGCGATG
131 ACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
12757398 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGC-CACACCC
196 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-CTCACACCC
* *
12757462 CCTTAAAGAGTATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
12757527 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
12757592 TGCCAACAAAAATACAAGGATCACGTCTACCAACTTTAGGGCCAAAACTCCTTTCAAAAAAATTT
390 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * * * *
12757657 TAAAAAATCTTGAATCGCAAAAGGTTTCAAAAATCGTGAAAAATAGGAAACGAGTCGTCTTGCCA
455 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
12757722 AGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAAGAAAAATGGCATTGG
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
12757787 CACATAGAAACATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGTTTGCGCATC
585 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * ** *
12757852 TCGTCTCTCTGGCTGACGTAGTGCCTGGCCGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCAT
650 CCGTCTCTCTGGCTGGCGTA--G--T----GCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
* * * * * * * * *
12757917 ACGGAGTTCATTCCAAATCTAAGATC-GAACC-GAACCGAAGCTTGTGACAGTAAGATTGGCAGC
707 ACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ACTGAGGGTTGCGACAGCAGGATCGGCAGC
** * * ** * * * * * *
12757980 ACGTAGAGAGGGACCTGGTCGATCCCC-AGCTTAC-CATCCCGCCCCTTTGGCCAGCTGAGCACC
770 ACACAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCC
* * * * *
12758043 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTGCTAGTCTAAGCATACGGAGT
834 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA-GGAGT
*
12758108 TCATTCCCATTCTAAGCATA
898 TCATTCCCAGTCTAAGCATA
* * * * * * *
12758128 CGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCCAGGGATAG-GGTAGCACATGCTGGGCTCA
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-TTGCAGCAGCACATGCTGGGCTCG
* * * * * * * *
12758192 AGCATGTGCTGGTG-CGCATTTTTTTTCACCGGGGCACCGTCGCTGGAGCATCACCAGAGAACCT
65 GGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCT
* * *
12758256 GACCGGCGGCATTGGGGTTTTCGGCGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
130 GACCGACGGCATTGGGG-TTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
12758320 TGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
12758385 CCCTTAAAGAGCATTTGAGATTTTACAGATTTGTTGCCAGTAGCCATTAAAGTGTCTTAAATGGT
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
12758450 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * ***
12758515 ATGCCTACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACT-CTTTTGAAAAAATT
389 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * *
12758579 TTAAAAAATCTCGAACCACAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
454 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
12758644 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
12758708 GCATGCAGAAATATTAAGATGTGCCTAAGCCAACCTACCACCCTATCGATCCACGGCTTGCGCAT
584 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
12758773 CCCGTCTCTCTGGCCGGCGTAGTGCCAGCCCGGCCGCCCGACCGCCCGCTCGTTTTGTCGGTTGG
649 CCCGTCTCTCTGGCTGGCGTAGT------------G--C--CCGCCCGCTCATTTCGTCGGTTGG
* * * *
12758838 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCATACCAGACTAAGGGTTGCGATAGCAGGAT
698 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGAT
12758903 CGGCAGCACACAGA--GGG----G---GA--CCCGA--T-CG-A-------------------T-
763 CGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTA
* *
12758933 ----CCC-CACGCTCGTTTCGTGGTTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATA
828 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA
12758993 CGGAGTTCATTCCCAGTCTAAG-AT-
893 -GGAGTTCATTCCCAGTCTAAGCATA
*
12759017 C-G-G---------A-TC---G----GACC-GA--GA--GTTGCAGTAGCACATGCTGGGCTCGG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* * * * * **
12759058 GCATGTGCTGGTGCCACATTTTTCTTC-ATCGGGGCTCCGTCGCCTGAGAATCGTCGGAGAACCT
66 GCATGTGCTGGTGCCACATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATCACCGGAGAACCT
* *
12759122 GACCGACGGCA------TT-----G---GA---------GGGGGTTTGCGCACATCATGTGCGAT
130 GACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
12759164 GGGTG-TAGGTACTTGGCCCTTATATTAGCCCCCTATCTCC-CATCAAACCTTGAGAACTCACAC
195 GGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAACCTCGAGAACTCACAC
* * *
12759227 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTATCCATTAGAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
12759292 GGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAG---TT--C----------T-T-
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * * * *
12759340 -A-GCCTACAAAAATACAAGGATCGCATCTA-AAATGTTCGGGGACAAAACTCCTGCCGAAAAAA
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * *
12759402 TTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
452 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
12759467 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
12759532 TGGCTGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
582 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * * *
12759597 ATCCTATATCTCTGACGACATAGTGCCCGCCTATCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTG
647 ATCCCGTCTCTCTG--G-C-T-G-G--CG--TA---G--TGCCCGCCCGCTCATTTCGTCGGTTG
* *
12759662 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACTGAGGGTTACGGCAGCAGG
697 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGACAGCAGG
* * * * *
12759726 ATC-GTAGCACGCAGAGGGGGACCCGACCGATTCCCGGCTTGCCCATCCTGCCCCTCTGGCCGGC
761 ATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGC
* * * *
12759790 TGAA-CGGCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA-T-----TCT---C
826 T-AAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC
12759845 -----AG-TC--T---AG-----GCATA
890 ATAGGAGTTCATTCCCAGTCTAAGCATA
* ** *
12759857 CGGAGTTCATTCCCAGTATAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* * * *
12759922 GCATGTGTTGGTGCCACAATTTTCTTCG-TCGAGGCACCATCGCCAGAGCATCACCGGAGAACCT
66 GCATGTGCTGGTGCCACATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATCACCGGAGAACCT
* * *
12759986 GATCGACGGCATTGGGGTTCCAACGATCAAGGGGGCCGGAGGGGGGTGTGCGCACATGATGTGCG
130 GACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC-G-GGGGGGTGTGCGCACATGATGTGCG
* * * *
12760051 ATGGGTGCTGCTACTTGGCCCTTATGTTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
12760116 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12760181 GGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * **
12760246 CATGCCAACAAAAATACAAGGATCACCTCTACAAAGTTT-GGGCCAAAAACTCCTTCTGAAAAAA
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAAAAAAA
* * * * * * *
12760310 TTTTTAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGACTTG
452 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
12760375 ACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
12760440 TGGCATGTAGAAATATGAAGATGTGCCT-AACCCACCTACC-CCGTA-CGATCCACGGCTT-CGC
582 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
12760501 ATCTCGTCTCT
647 ATCCCGTCTCT
12760512 NNNNNNNNNN
Statistics
Matches: 6686, Mismatches: 766, Indels: 722
0.82 0.09 0.09
Matches are distributed among these distances:
823 2 0.00
824 50 0.01
825 205 0.03
826 84 0.01
827 2 0.00
828 2 0.00
829 2 0.00
830 1 0.00
831 1 0.00
832 1 0.00
833 2 0.00
834 2 0.00
835 4 0.00
836 2 0.00
837 1 0.00
838 3 0.00
839 4 0.00
840 3 0.00
841 1 0.00
842 2 0.00
843 182 0.03
844 2 0.00
846 1 0.00
848 2 0.00
849 2 0.00
851 2 0.00
852 1 0.00
854 1 0.00
855 2 0.00
858 4 0.00
859 6 0.00
860 2 0.00
862 2 0.00
863 3 0.00
864 128 0.02
865 32 0.00
866 48 0.01
867 1 0.00
869 2 0.00
870 5 0.00
873 42 0.01
874 405 0.06
875 8 0.00
876 65 0.01
877 217 0.03
878 16 0.00
880 1 0.00
881 2 0.00
882 6 0.00
883 2 0.00
884 1 0.00
885 4 0.00
886 2 0.00
887 6 0.00
888 155 0.02
889 384 0.06
890 8 0.00
891 75 0.01
892 46 0.01
893 416 0.06
894 253 0.04
895 31 0.00
896 3 0.00
897 4 0.00
898 2 0.00
899 1 0.00
900 3 0.00
901 39 0.01
902 153 0.02
903 405 0.06
904 12 0.00
905 46 0.01
906 118 0.02
907 21 0.00
908 517 0.08
909 129 0.02
910 1 0.00
911 3 0.00
912 2 0.00
914 208 0.03
915 411 0.06
916 212 0.03
917 346 0.05
918 2 0.00
919 5 0.00
920 3 0.00
921 5 0.00
922 87 0.01
923 187 0.03
924 432 0.06
925 107 0.02
926 6 0.00
927 1 0.00
928 7 0.00
929 1 0.00
930 86 0.01
931 1 0.00
932 166 0.02
933 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (917 bp):
CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
ACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGGCAGCACACAGAGGGG
GACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAGGAGTTCATTCCCAGTCT
AAGCATA
Found at i:12754535 original size:26 final size:26
Alignment explanation
Indices: 12754487--12754537 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12754477 GTTGACTTAG
* **
12754487 GCATATGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12754513 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
12754538 GGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12755410 original size:26 final size:26
Alignment explanation
Indices: 12755381--12755433 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12755371 GTTGACTTAG
* *
12755381 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
*
12755407 GCATATAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
12755433 G
1 G
12755434 ATTGGAGCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:12756291 original size:26 final size:26
Alignment explanation
Indices: 12756261--12756310 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12756251 GACTTAGGCG
12756261 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
12756287 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12756311 ATCGAACCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:12757183 original size:26 final size:26
Alignment explanation
Indices: 12757147--12757225 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
12757137 GTTGACTTAG
*
12757147 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12757173 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12757199 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12757225 G
1 G
12757226 ATCAGACCAG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12758100 original size:26 final size:26
Alignment explanation
Indices: 12758071--12758149 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
12758061 GTTGACTTAG
* * *
12758071 GCATACGGAGTTTATTGCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12758097 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12758123 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12758149 G
1 G
12758150 ATTAGATCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12758474 original size:924 final size:922
Alignment explanation
Indices: 12756261--12760511 Score: 4598
Period size: 924 Copynumber: 4.7 Consensus size: 922
12756251 GACTTAGGCG
* * *
12756261 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGA-TCGAACCAAACCC
1 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCAGACCC
* * * **
12756325 AGGGTTGTGGCAGGACATGCTGGGCTCGGGCATGTGCTGGTGCGCATTTTTCTTCGCCGACGCAC
65 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGCATTTTTTTTCGCCGGGGCAC
* * * *
12756390 TGTCG-TCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGG-TTCCGATGATCGGGGGGCC
130 CGTCGCT-GGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTTTCGACGATCGGGGGGCC
12756453 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
194 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
12756518 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTCGCC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCC
* * *
12756583 AGTAGCCATTAAAGTGTCCTAAATGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACATTTC
324 AGTAGCCATTAAAGTGTCTTAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* ** *
12756648 AAGTTTTTAGTTGAATTTTTTTGTGCACCCCTACAAAAATACAAGGATCACGTCTAACAAGTTTA
389 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCTACAAAAATACAAGGATCACGTCTACCAAGTTTA
* * *
12756713 GGGCCAAAACACC-TTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCAT
454 GGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCTCGAACCGCAAAAGGTTTCAAAAATCGT
* * *
12756777 TAAAAATAGAAAACGAGTTGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
518 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
12756842 AATTTACAAGCCATAAAAATGGCATTGGGACGCAGAAATATTAAGATGTGCCTAAGCCCACCTAC
583 AATTTACAAGCCA-AAAAATGGCATTGGCACGCAGAAATATTAAGATGTGCCTAAG-CCACCTAC
12756907 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--T----GCCCGCC
646 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGGCCGCCCGCC
* *
12756964 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
711 CGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * **
12757029 AGGGTTGCGACAGCAGGATCAGCAGCATACAGAGGAGGACCCAATTAATCCACAGCTTGTGCATC
776 AAGCTTGCGACAGCAAGATCAGCAGCATACAGAGGAGGACCCAATCAATCCACAGCTTGACCATC
* * * *
12757094 CTGCCCCTCTGGCCAGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
841 CCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
*
12757159 CATTTCCAGTCTAAGCA
906 CATTGCCAGTCTAAGCA
* * * * *
12757176 TAGGGAGTTCATTCCCAGTCTAAGCATACGAAATTCATTCCCAGTCTAAGATCAGACCAGACCGA
1 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCCA
* * * *
12757241 GGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTG-TCATATTTTTCTTCGCTGGGGCA
66 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGCAT-TTTTT-TTCGCCGGGGCA
* * * * * * *
12757305 GCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCT-GCCGATTGAGGGGGC
129 CCGTCGCTGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTTTCGACGATCG-GGGGGC
*
12757369 C-GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
193 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
12757433 CCCTCATCAAACCTCGAGAAGC-CACACCCCCTTAAAGAGTATTTGAGATGTTACAGGTTTGCTG
258 CCCTCATCAAACCTCGAGAA-CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG
*
12757497 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
322 CCAGTAGCCATTAAAGTGTCTTAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
12757562 TTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAACT
386 TTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCTACAAAAATACAAGGATCACGTCTACCAAGT
* * *
12757627 TTAGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTTGAATCGCAAAAGGTTTCAAAAATC
451 TTAGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAGGTTTCAAAAATC
* *
12757692 GTGAAAAATAGGAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
516 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* ** * * *
12757757 TGAATTTACAAGCAAGAAAAATGGCATTGGCACATAGAAACATGAAGATGTGCCTAAACTCACCT
581 TGAATTTACAAGCCA-AAAAATGGCATTGGCACGCAGAAATATTAAGATGTGCCTAAGC-CACCT
* * *
12757822 ACCACCCTATCGATCCACGGTTTGCGCATCTCGTCTCTCTGGCTGACGTAGTGCCTGGCCGCCCG
644 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGGCCGCCCG
* * *
12757887 CCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAATCTAAGATC-GAACC-GA
709 CCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-
* * ** * *** * *
12757950 ACCGAAGCTTGTGACAGTAAGATTGGCAGCACGTAGAGA-G-GGACCTGGTCGATCCCCAGCTT-
772 ACCGAAGCTTGCGACAGCAAGATCAGCAGCA--TACAGAGGAGGACCCAATCAATCCACAGCTTG
*
12758012 ACCATCCCGCCCCTTTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
835 ACCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* *
12758077 GGAGTTTATTGCTAGTCTAAGCA
900 GGAGTTCATTGCCAGTCTAAGCA
* * *
12758100 TACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCCA
1 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCCA
* * ** *
12758165 GGGATAG-GGTAGCACATGCTGGGCTCAAGCATGTGCTGGTGCGCATTTTTTTTCACCGGGGCAC
66 GGG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGCATTTTTTTTCGCCGGGGCAC
* *
12758229 CGTCGCTGGAGCATCACCAGAGAACCTGACCGGCGGCATTGGGGTTTTCGGCGATCGGGGGGCCG
130 CGTCGCTGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTTTCGACGATCGGGGGGCCG
* *
12758294 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCTTATCC
195 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
12758359 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGTTGCCA
260 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCA
12758424 GTAGCCATTAAAGTGTCTTAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
325 GTAGCCATTAAAGTGTCTTAAATGG-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
12758489 GAGTTTTTAGCTCAATTTTTTTGTGCATGCCTACAAAAATACAAGGATCACCTCTACCAAGTTTG
389 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCTACAAAAATACAAGGATCACGTCTACCAAGTTTA
* *
12758554 GGGCCAAAACT-CTTTTGAAAAAATTTTAAAAAATCTCGAACCACAAAAGGTTTCAAAAATCGTG
454 GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAGGTTTCAAAAATCGTG
12758618 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
519 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
12758683 ATTTACAAGCCATAAAATGGCATTGGCATGCAGAAATATTAAGATGTGCCTAAGCCAACCTACCA
584 ATTTACAAGCCAAAAAATGGCATTGGCACGCAGAAATATTAAGATGTGCCTAAGCC-ACCTACCA
* *
12758748 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCAGCCCGGCCGCCCG
648 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCTGGCCG--C-
* *
12758813 ACCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCATACC
706 -CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
12758878 AGA-CTAAGGGTTGCGATAGCAGGATCGGCAGCACACAGA-G-GG----------------G---
770 AGACCGAA-GCTTGCGACAGCAAGATCAGCAGCATACAGAGGAGGACCCAATCAATCCACAGCTT
* * *
12758921 G---A-CCCG---ATC--G--A--T-----CCC-CACGCTCGTTTCGTGGTTTGACTTAGGCATA
834 GACCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * *
12758967 CAGAGTTCATTCCCAATCTAAGCA
899 CGGAGTTCATTGCCAGTCTAAGCA
12758991 TACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A-TC---G----GACC-G----A
1 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCCA
* * * * * ** *
12759030 GAGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCTC
66 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTTTTTTTCGCCGGGGCAC
* ** *
12759095 CGTCGCCT-GAGAATCGTCGGAGAACCTGACCGACGGCA--------TT-G--GA----------
130 CGTCG-CTGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTTTCGACGATCGGGGGGCC
* * *
12759138 --GGGGGTTTGCGCACATCATGTGCGATGGGTG-TAGGTACTTGGCCCTTATATTAGCCCCCTAT
194 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTAT
*
12759200 CTCC-CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG
258 C-CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG
* * * *
12759264 CCAGTATCCATTAGAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACAC
322 CCAGTAGCCATTAAAGTGTCTTAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
12759329 TTC--G-----A---G-----TTCT-T--A-GCCTACAAAAATACAAGGATCGCATCTA-AAATG
386 TTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCTACAAAAATACAAGGATCACGTCTACCAA-G
** * ** * * * *
12759374 TTCGGGGACAAAACTCCTGCCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAAT
450 TTTAGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAGGTTTCAAAAAT
* *
12759439 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGT
515 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** * *
12759504 ATGAATTTACAAGCCATAAAAATGGCATTGGCTGGCAGAAATATGAAGATGTGCCTAAACCCACC
580 ATGAATTTACAAGCCA-AAAAATGGCATTGGCACGCAGAAATATTAAGATGTGCCT-AAGCCACC
** * * *
12759569 TACCACCCTATCGATCCACGGCTTGCGCATCCTATATCTCT-GACGACATAGTGCCCGCCTATCC
643 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCC--T--
*
12759633 GCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
700 GGCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * ** * * * *
12759698 -GAACCAGACTGAGGGTTACGGCAGCAGGATC-GTAGCACGCAGAGGGGGACCCGACCGATTCC-
765 AG-ACCAGACCGAAGCTTGCGACAGCAAGATCAGCAGCATACAGAGGAGGACCCAATC-AATCCA
* * * * * ** *
12759760 CGGCTTGCCCATCCTGCCCCTCTGGCCGGCTGAACGGCCACACGCTCGTTTCATGGGTTGACTTA
828 CAGCTTGACCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTA
12759825 GGCAT----A---CA--G--AG--T-----
893 GGCATACGGAGTTCATTGCCAGTCTAAGCA
* * * * *
12759837 T-C--A-TTC--T--CAGTCTAGGCATACGGAGTTCATTCCCAGTATAAGATTGGACCGGACCGA
1 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCCA
* * * * * *
12759894 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACAATTTTCTTCGTCGAGGCAC
66 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTTTTTTTCGCCGGGGCAC
* ** * * * * *
12759959 CATCGCCAGAGCATCACCGGAGAACCTGATCGACGGCATTGGGG-TTCCAACGATCAAGGGGGCC
130 CGTCGCTGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTTTCGACGATC-GGGGGGCC
* * *
12760023 GGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATGTTGGCCCTCTA
194 -G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
12760088 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG
* *
12760153 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACAC
322 CCAGTAGCCATTAAAGTGTCTTAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
12760218 TTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACAAAGT
386 TTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCTACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * *
12760283 TT-GGGCCAAAAACTCC-TTCTGAAAAAATTTTTAAAAATCCCAAACCGTAAAAAGTTTCGAAAA
451 TTAGGGCC-AAAACTCCTTTC-GAAAAAATTTTAAAAAATCTCGAACCGCAAAAGGTTTCAAAAA
* * * *
12760346 TCATGAAAAATAGAAAACAAGTCGACTTGACATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
514 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * *
12760411 TATGAATTTACAAGCCATAAAAATGTCATTGGCATGTAGAAATATGAAGATGTGCCTAACCCACC
579 TATGAATTTACAAGCCA-AAAAATGGCATTGGCACGCAGAAATATTAAGATGTGCCTAAGCCACC
* *
12760476 TACC-CCGTA-CGATCCACGGCTT-CGCATCTCGTCTCT
643 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
12760512 NNNNNNNNNN
Statistics
Matches: 2849, Mismatches: 314, Indels: 357
0.81 0.09 0.10
Matches are distributed among these distances:
823 2 0.00
824 50 0.02
825 215 0.08
826 79 0.03
827 6 0.00
828 3 0.00
829 4 0.00
836 1 0.00
838 8 0.00
839 2 0.00
840 2 0.00
841 2 0.00
842 6 0.00
843 176 0.06
844 4 0.00
845 2 0.00
846 1 0.00
848 1 0.00
849 3 0.00
851 2 0.00
852 3 0.00
853 1 0.00
854 1 0.00
855 3 0.00
857 3 0.00
858 3 0.00
859 4 0.00
860 2 0.00
863 3 0.00
864 118 0.04
865 34 0.01
866 49 0.02
867 2 0.00
869 1 0.00
870 3 0.00
871 1 0.00
874 3 0.00
877 2 0.00
878 1 0.00
887 1 0.00
888 3 0.00
889 176 0.06
890 3 0.00
891 72 0.03
892 3 0.00
896 1 0.00
897 1 0.00
899 2 0.00
901 1 0.00
903 1 0.00
904 13 0.00
905 14 0.00
906 8 0.00
907 19 0.01
908 187 0.07
909 3 0.00
912 1 0.00
914 3 0.00
915 96 0.03
916 197 0.07
917 320 0.11
918 3 0.00
919 1 0.00
921 2 0.00
922 88 0.03
923 185 0.06
924 431 0.15
925 104 0.04
926 9 0.00
927 5 0.00
928 8 0.00
929 3 0.00
930 78 0.03
931 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (922 bp):
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCCA
GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGCATTTTTTTTCGCCGGGGCACC
GTCGCTGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTTTCGACGATCGGGGGGCCGG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAG
TAGCCATTAAAGTGTCTTAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
GTTTTTAGCTGAATTTTTTTGTGCATGCCTACAAAAATACAAGGATCACGTCTACCAAGTTTAGG
GCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAGGTTTCAAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCAAAAAATGGCATTGGCACGCAGAAATATTAAGATGTGCCTAAGCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGGCCGCCCGCCCGCTC
GTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGCT
TGCGACAGCAAGATCAGCAGCATACAGAGGAGGACCCAATCAATCCACAGCTTGACCATCCCGCC
CCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTG
CCAGTCTAAGCA
Found at i:12758998 original size:26 final size:26
Alignment explanation
Indices: 12758962--12759014 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12758952 TTTGACTTAG
12758962 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
12758988 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12759014 G
1 G
12759015 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12759853 original size:26 final size:26
Alignment explanation
Indices: 12759823--12759873 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12759813 TGGGTTGACT
*
12759823 TAGGCATACAGAGTTCATTCTCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
12759849 TAGGCATACGGAGTTCATTCCCAGT
1 TAGGCATACAGAGTTCATTCCCAGT
12759874 ATAAGATTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:12763028 original size:26 final size:26
Alignment explanation
Indices: 12762999--12763077 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
12762989 CCGATCTAAT
12762999 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12763025 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12763051 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12763077 C
1 C
12763078 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12763956 original size:26 final size:25
Alignment explanation
Indices: 12763927--12764005 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
12763917 CTGGTCTGAT
12763927 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAATTC-GTATG
* *
12763953 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAA-TTCGTATG
12763979 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAA-TTCGTATG
12764005 C
1 C
12764006 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 46 0.96
27 2 0.04
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (25 bp):
CTTAGACTGGGAATGAATTCGTATG
Found at i:12764485 original size:920 final size:917
Alignment explanation
Indices: 12762094--12765803 Score: 5048
Period size: 923 Copynumber: 4.0 Consensus size: 917
12762084 CCGATCCAAT
* *
12762094 CTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * **
12762159 ACGAAACTAGCGTGCGGGCGCTCAGCTGGCCAGAAGGGCGGGATGCACAAGCTGGGGATCGGTCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCAATCG
* ** *
12762224 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTATTGCAACCCTCAGTCTGGTATGATCTTAGACTGG
131 GGTCCCCCTCTACGTGCTGCCGATCCTGCTATCACAACCCTCAGTCTGGTCTGATCTTAGACTGG
*
12762289 GAATGAACTCAGTATGCCTAAGCCAACCGACAAAATGAGCGAGCGGTCGGGCGGGCGGGCTGCCA
196 GAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-CGA-------GGCGGGCGGG--G-CA
12762354 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGCTTAGGC
247 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGCTTAGGC
12762419 ACATCTTAATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
312 ACATCTTAATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
12762484 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTTGAAACTT
377 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTTGAAACTT
*
12762549 TTTGTGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGAGGTG
442 TTTGTGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
12762614 ATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTTT
507 ATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
12762679 GTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAACAAACCTGTAA
572 GTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAACAAACCTGTAA
* *
12762744 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATAT
637 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
12762809 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC-ACGA
702 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC-A
* * * * *
12762873 AAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCCAGCGACGGTGCCCCGGTC-AAGAAA
766 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTTCGGCGACGGTGCCCCGG-CGAAGAAA
* * * * * * *
12762937 AATGCGCACCAGCACATGCCCGAGCCTAGCATGTGCTAC-CCTAACCCTGGGTCCGATCTAATCT
830 AATGCGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGC-AACCCTCGGTCTGGTCTGATCT
12763001 TAGACTGGGAATGAACTCCGTATG
894 TAGACTGGGAATGAACTCCGTATG
* * * *
12763025 CTTAGAATGGGAATGAACTCCGTATGCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
12763090 ATGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCAATCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCAATCG
* * * * * * * *
12763155 GGTCCCCCTCTACGTGCTGCCAATCTTACTGTCACAAGCTTCGGT-TCGGT-TCGATCTTAGATT
131 GGTCCCCCTCTACGTGCTGCCGATCCTGCTATCACAACCCTCAGTCT-GGTCT-GATCTTAGACT
*
12763218 GGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGCCAGGCACTACGT
194 GGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGA---GGCGGGCGG---GGCACTACGC
* * * * * *
12763283 CGGCCAGAGAAACGGAATGCGCAAGCCGTGGATTGATAGGGTGGCAGGTGGGTTTAGGCACATCT
253 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGCTTAGGCACATCT
* * ***
12763348 TCATGTTTCTATGTGCCAATGCCATTTTTCAT-GCTTGTAAATTCATACAATGGTCCCTTAAGCC
318 TAATATTTCTGCATGCCAATGCCATTTTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
12763412 TTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
382 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTTGAAACTTTTTGT
* ** ** * *
12763477 GATTCAAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCTAAAGTTGGTAGACGTGATCCT
447 GGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
12763542 TGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAC
512 TGTATTTTTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
12763607 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
577 CATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCT
* * *
12763672 CAAATACTCTTTAAGGGGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
642 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
12763737 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCACTCAATCGGT-AGA
707 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCC-CCCGATC-GTCAGA
* * * * *
12763801 ACCCCAATGTCGTCGGTCAGGTTCTCCAGTGATGCTTCGGTGATGGTGCCCCAGCGAAGAAAAAA
768 ACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTTCGGCGACGGTGCCCCGGCGAAG-AAAAA
* *
12763866 TACGGTACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTA
832 TGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTA
* *
12763931 GACTGGGAATGAATTCTGTATG
896 GACTGGGAATGAACTCCGTATG
* *
12763953 CTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
12764018 ACGAAACGAGTGTGCGGGTGCTCAGCTGGCTAGAGGGGCAGGATGCACAAGCTGGGGATTAATCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCAATCG
* * *
12764083 GGTCCCCCTCTACGTGCTGCTGATCCTGCTATCAAAACCCTCGGTCTGGTCTGATCTTAGACTGG
131 GGTCCCCCTCTACGTGCTGCCGATCCTGCTATCACAACCCTCAGTCTGGTCTGATCTTAGACTGG
* * * *
12764148 GAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGA-GCGGG-TGGGCACTACGTCGGCCAGA
196 GAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGGCGGGCGGGGCACTACGCCGGCCAGA
*
12764211 GAGACGGGATGCGCACGCCGTGGATCGATAGGGTGGTAGG-TGGACTTAGGCACATCTTAATATT
261 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGG-CTTAGGCACATCTTAATATT
12764275 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
325 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
12764340 AAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGG
390 AAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGG
* *
12764405 ATTTTTTAAAATTTTTTCAAAAGGAGTTTTGTCCCCAAACTTGAG-AGAGGTGATCCTTGTATTT
455 ATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTG-GTAGACGTGATCCTTGTATTT
*
12764469 TTGTAGGCATGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
519 TTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
12764534 AAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGG---CAAACCTGTAAAATCTCAAATGC
584 AAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGC
12764596 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
649 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** * *
12764661 CCAGCACAAATCGCACATCATGTGCGCACACCCCCGCTGGCCCCCCTGATCGTCGGAACCTCAAT
714 CCAGCACCCATCGCACATCATGTGCGCACACCCCC-C-GGCCCCCC-GATCGTCAGAACCCCAAT
* * * * * **
12764726 GCCGTCGGTCAGATTCTTCGGTCATG-ATCAGGCGATGGTGCCCCGGTAAAGAAAAATGCGGCAC
776 GCCGTCGGTCAGGTTCTCCGGTGATGCTTC-GGCGACGGTGCCCCGGCGAAGAAAAATGC-GCAC
* *
12764790 CAGCACATGCCAGAGCCCAGCATGTGCTGCTGTAA-CC-C--TC--G---G----T---C-----
839 CAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
*
12764834 -T--ACTCC-AAT-
904 ATGAACTCCGTATG
* *
12764843 CTTAGACTGGGAATGGACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
12764908 ACAAAACGAACGTACGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATTGC-TT
66 ACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCACAAGCTGGGGA-T-CAAT
* * ** ** * *
12764972 C-GGTCCCCCTCTGCGTGCTGGCGATTTTGCTGCCACAACCCTCAGTCTAGTCTGATCTTGGACT
129 CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTATCACAACCCTCAGTCTGGTCTGATCTTAGACT
*
12765036 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGTTGGCGGGCGGGCGGGCGGG
194 GGGAATGAACTCCGTATGCCTAAGCCAACCGAC--AA-AA---------C--G-AGGCGGGC--G
12765101 AGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGC
242 -GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGC
*
12765166 TTAGGCACATCTTAATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCG
306 TTAGGCACATCTTAATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
12765231 TCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACAACTCGTTTTCTATTTTTAATGATTTTTG
371 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTTG
* * *
12765296 AAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACTTGTTA
436 AAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
12765361 GACGTGATCCTTGTATTTTTGTAGGCGTGCACAAAAAAATTCAACTAAAAACTCAAAATGTACAA
501 GACGTGATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
12765426 GATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTAAGACACTTTATTGGCTACTGGCAACAAAC
566 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAACAAAC
12765490 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
631 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
12765555 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTGGCCCCCCGAT
696 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
* * * * *
12765620 CGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGGCGATGCTAT-GACGACGGTGCCTCGGCGA
761 CGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCT-TCGGCGACGGTGCCCCGGCGA
* * ** *
12765684 AGAAAAATGCGCACCAGCACATGCCCGACCCCAGCATGTCCTGCCACAACCCTGGGT-TCGGT-T
825 AGAAAAATGCGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCT-GGTCT
*
12765747 CGATCTTAGACTAGGAATGAACTCCGTATG
889 -GATCTTAGACTGGGAATGAACTCCGTATG
*
12765777 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCATATGC
12765804 CTAAGTCATC
Statistics
Matches: 2454, Mismatches: 244, Indels: 159
0.86 0.09 0.06
Matches are distributed among these distances:
890 192 0.08
891 5 0.00
892 4 0.00
893 2 0.00
894 1 0.00
900 1 0.00
902 1 0.00
903 1 0.00
904 1 0.00
906 5 0.00
907 1 0.00
908 33 0.01
909 92 0.04
910 337 0.14
911 4 0.00
912 123 0.05
914 2 0.00
915 7 0.00
916 51 0.02
917 169 0.07
919 4 0.00
920 342 0.14
921 2 0.00
923 473 0.19
924 9 0.00
925 12 0.00
926 56 0.02
927 10 0.00
928 278 0.11
929 3 0.00
930 6 0.00
931 196 0.08
932 5 0.00
933 2 0.00
934 24 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (917 bp):
CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCAATCG
GGTCCCCCTCTACGTGCTGCCGATCCTGCTATCACAACCCTCAGTCTGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGGCGGGCGGGGCACTACGCCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGCTTAGGCACATCTTAATATTT
CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGA
TTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
GTAGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCCGT
CGGTCAGGTTCTCCGGTGATGCTTCGGCGACGGTGCCCCGGCGAAGAAAAATGCGCACCAGCACA
TGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
CCGTATG
Found at i:12764894 original size:26 final size:26
Alignment explanation
Indices: 12764835--12764895 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
12764825 CCCTCGGTCT
*
12764835 ACTCCA-AT-CTTAGACTGGGAATGG
1 ACTCCATATGCTTAGACTGGGAATGA
*
12764859 ACTCTATATGCTTAGACTGGGAATGA
1 ACTCCATATGCTTAGACTGGGAATGA
*
12764885 ACTCCGTATGC
1 ACTCCATATGC
12764896 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.77
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
ACTCCATATGCTTAGACTGGGAATGA
Found at i:12765789 original size:26 final size:26
Alignment explanation
Indices: 12765751--12765803 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12765741 TCGGTTCGAT
12765751 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12765777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12765803 C
1 C
12765804 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12766657 original size:26 final size:26
Alignment explanation
Indices: 12766598--12766658 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
12766588 CCCTCGGTCT
*
12766598 ACTCCA-AT-CTTAGACTGGGAATGG
1 ACTCCATATGCTTAGACTGGGAATGA
*
12766622 ACTCTATATGCTTAGACTGGGAATGA
1 ACTCCATATGCTTAGACTGGGAATGA
*
12766648 ACTCCGTATGC
1 ACTCCATATGC
12766659 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.77
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
ACTCCATATGCTTAGACTGGGAATGA
Found at i:12768419 original size:26 final size:26
Alignment explanation
Indices: 12768383--12768461 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
12768373 CCGGTCTGAT
*
12768383 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12768409 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
12768435 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12768461 C
1 C
12768462 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12770148 original size:901 final size:898
Alignment explanation
Indices: 12765882--12775560 Score: 11732
Period size: 901 Copynumber: 10.8 Consensus size: 898
12765872 GATCGGCCGG
* * * *
12765882 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAATGAGCGGCCGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * *
12765947 -GGCCGGGCACTACGTCGGCCAGAGAGACGTGATGCACAAGCCATGGATCGATAGGGTGGTAGGC
66 GGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** *
12766011 GGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAATTTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
12766076 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCATGAAT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * * * **
12766141 TTTGAAACTTCTTGCGGTTCAAGAGTTTTCAAAATTTTTTTGGAAGGATTTTTGATCCCAAACTT
261 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTT
* * * *
12766206 GGAAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATTTAGCTAAAAACTCGAAGTG
325 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC--AAAAAATTCAGCTAAAAACTCGAAGTG
*
12766271 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
388 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
12766336 CAAACCTGAAAAATCTCAAATTCTC-TTAAGGGGGTGTGAGTTCTCGAGGGTTTGATGAGGGATA
453 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATA
** *
12766400 GGGGGCCAATATAAGGGCCAAGTACCAGCACAAATCGCACATCATGTGCGCACACCCCCGCTGGC
517 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCC-C-GGC
* * * * * * * *
12766465 CCCCCTGATCGTCGGAACCTCAATGCCGTCGGTCAGATTCTTCGGTC-ATGATCAGGCGATGGTG
580 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG-CGATGCTCCGACGATGGTG
** * * *
12766529 CCCCGGTAAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCTGTAACCCTCG
644 CCCCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCG
* ** * **
12766594 GTCTACTCCAATCTTAGACTGGGAATGGACTCTATATGCTTAGACTGGGAATGAACTCCGTATGC
709 GTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
12766659 CTAAGTCAACCCACAAAACGAACGTACGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCACAAGCC
774 CTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * ** *
12766724 GAGGATTGCTTC-GGTCCCCCTCTGCGTGCTGGCGATTTTGCTGCCACAACCCTC-AGTCTA
839 GAGGATCG-GTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGA-TCTA
* *
12766784 GTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGTTGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-C--G--AGC
*
12766849 GGGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
58 GGGCGGGCGGGC--G-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
12766914 GGGTGGTAGGT-GGTTTAGGCACATCTTAATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
120 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* *
12766978 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTAGTTTTCTAT
185 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** * *
12767043 TTTTCATGATTTTCCAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTG
250 TTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTG
*
12767108 GCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAA
314 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAA
* * *
12767173 ACTTGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGG
378 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
12767238 CTACTAGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGA
443 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
12767303 TGA-GGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCACACATCATGTGCGCACACC
508 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACC
* * *
12767367 CCCCGGCCCCCCCGATCATCGAAACCCCAATGCCGCCGATCAGGTTCT-C--CG--G-T-----G
573 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACG
* * * ** * *
12767421 ATGGTGCCCCGACGAAGAAAATTAC-AGCACCAGCACATGCCCGAGCCTGGCTTGTGCTGAC-GT
638 ATGGTGCCCCGGCGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTG-CTGC
* * ** * * **
12767484 AACCTTCGTTCCGGTCTGATCCTAGACTGGGAATGAACTCTGTATGCTTAGACTACGAATGAACT
701 AACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * **
12767549 CCATATGCCTAAGTCAACCAACGAAACGAGTGTGCGGGTGCTCAGTCGGCCAGAGGGAAGGGATG
766 CCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATG
* * ** * ** *
12767614 CGCAATCCGAGGATCGATCGGGTCCCCCTCTATGTGCTGTCGATCTTGCTGTGGCAACCCTCGGT
831 CGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGAT
*
12767679 CTG
896 CTA
* *
12767682 GTCTGATCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCGAACCGACGAAATGAGCGGGCGGG
1 GTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
*
12767746 CGGGC-GGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGG
65 CGGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* ** *
12767810 TGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTGATGGCTTGTAAATTCATAC
130 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
12767875 AATTGTCCCTTAAGCCTTCACGTGAAGTTTAATGGC-AG--GA--CG------A-----C---AT
195 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * *
12767921 TTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTTGGAAGGAGATTTT-ACCCCAAAC
260 TTTTGAAACTTTTTGCGGTTCGAGA-TTTTTTAAAATTTTTTGGAAGGAG-TTTTGGCCCCAAAC
* * *
12767985 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGGACAAAAAAATTCAGCTCAAAACTCGAAGT
323 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGT
* * * *
12768050 GTACAAGATTTTTTGACCATTTG-AAAAAGTGTCCCCATTTTAAACACTTTAGTGGCTACTGGCA
387 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
12768114 GCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTATGACTTCTCGAGGTTTGATGAGGGATA
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
12768179 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCTGCCC
517 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCC
* * * * * *
12768244 CCTCAATCGGCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC
582 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
*
12768309 CAGCGAAGAAAAAAATG-G-CACCAGCACATGCCCGAGCCC-GACATGTGCTGCTGCAACCCTCA
647 CGGCGAAG--AAAAATGCGACACCAGCACATGCCCGAGCCCAG-CATGTGCTGCTGCAA-CC-C-
* *
12768371 GTCCGGTCTGATCTTAGACTGGGAATGAATTCCATATGCTTAGACTGGGAATGAACTCCTTATGC
706 -T-C-G---G-TC-TAG--T----CTG--------AT-CTTAGACTGGGAATGAACTCCGTATGC
* *
12768436 TTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
748 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCC
** * * * * *
12768501 GGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCTGTGTGCTATCGATCTT
813 GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * **
12768566 GCTGTCGTAACCCTC-AGTCCG
878 GCTGCCGCAACCCTCGA-TCTA
* * * * * *
12768587 GTCCGATCATAGACTCGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGAGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * *
12768652 AGGTG-GACGGGCACTAGGTCGGCCAGAGAGACGGGATGCACAAGCCGT-GATC-CTTGGGTGGA
66 -GG-GCG--GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
12768714 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCTATTTTTGTGGCTTGTAAATTCA
127 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* ** *
12768779 TACGATGGTAACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAT
192 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* *
12768844 GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTCAAAATTTTTTTGGAAGGATTTTTGGCCCCAA
257 GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAA
* * * * * *
12768909 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGGATGCAAAAAAAAATTTAGCTGAAAACTCGAA
321 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAATTCAGCTAAAAACTCGAA
12768974 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGG
385 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * * * *
12769038 CAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGTTGTGAGTTTTCAAGGTTTAATGATGGA
450 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
** * * * *
12769103 TACAGAGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGCGCACACAGCCCCTCGG
515 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCGG
* * * * **
12769168 -TCCCCCGTTCGTCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGCTCCGACGATGGCA
579 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG
* * *
12769232 CCCCGACGAAGAAAAATGTGACACCAACACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCG
644 CCCCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCG
* * * *
12769297 GTCTAGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATCTGC
709 GTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* ** *
12769362 CTAAGTCAACTCACGGAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGCATGCGCAAGCC
774 CTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * *
12769427 GAGGATAGGTCGGTTCCCCCTCTGCGTGTTGCCAATCCTACTGCCGCAACCCTCGATCTA
839 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTA
* * *
12769487 GTCTGATCTTATACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCTGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* *
12769552 GGGCGAGTGGGCACTACGCCGGCCAGAGTGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
66 GGGC--G-GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
12769617 -GTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCATGTAAATTCAT
128 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
12769681 ACACTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTACTTTTCATG
193 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
** * * **
12769746 ATTTTCAAAACTTTTTACGGTTCGAGATTTTTGAAAATTTTTTGCGAAGGAGTTTTGGCATCAAA
258 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTG-GAAGGAGTTTTGGCCCCAAA
* * * * *
12769811 CTTGGTTGACATGATCCTTGTATTTTTGTTGTCATGCACAAAAAATTCAGCTAAAAGCTCGAACT
322 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGT
** *
12769876 ACACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATGGCTACTGGCA
387 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
12769941 GCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGCGATA
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
12770006 GGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATAG-GCATACAGCCCCCCGAC
517 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT-GTGCACACA-CCCCCCGGC
** * * * * * * * *
12770070 CCCCCCGATCACCAGAACCCTAACGCCGCTGGTTAGGTTCTCTGGCGATTCTCCGGC-ATGGTGC
580 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
* * * * * *
12770134 CTCGGTGAAGAAAAATGCGACACCAACACATGTCCGAGCCCTGCATGTGCTACTGCAACCCTCGG
645 CCCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
* ** * *
12770199 TCTAGTCTGATCTTAAACTTAGAATGAACTCCGGTCCGAT-CTTAAACTTGGAATGAACTCCG-A
710 TCTAGTCTGATCTTAGACTGGGAATGAACTCC-GT---ATGCTTAGACTGGGAATGAACTCCGTA
* * * * *
12770262 T---T---T---------------G-GT-CCGGT-CTGATCTGGCCAGAGGGGCTGGATGCGCAA
771 TGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * *
12770303 GCC-AGGGATC-GACTGGGTCACCCTCTGTGTGCTGTCGATCCTACTGCCGCAACCCT-TAGTCC
836 GCCGA-GGATCGGTC-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGA-TCT
12770365 A
898 A
* * *
12770366 GTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * *
12770431 GGGC-GGGCACTAAGCCAGCCAGAGAGACGGGATGCG-AAACCGTGGATCGATAAGGTGGTA-GT
66 GGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
12770493 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * *
12770558 ATGGTCCCTGAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTATATTTTTCACGATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
** * *
12770623 TTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCGCTAAACTTG
261 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
* * *
12770688 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAATATTTCAGCTCAAAACTCGAAGTGTA
326 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTA
* * *
12770753 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACAGGCAACA
390 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
12770818 AACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
455 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
12770883 GGCCAATATAAGGGCCAAGTGCCAGCACCCATCACACATCATGTGTGCACAC-CCCTCCCGGCCC
520 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGTGCACACACCC-CCCGGCCC
* * *
12770947 CCCCGATCGTCGGAACCCCAAGGCCGCCGGTCAGGTTCTCCGGCGATCCTCCGACGTTGGTGCCC
582 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
* ** * * * * * * *
12771012 CGACGAAGAAAAATAAGGCACCAACAAATGCCCGAGCCCAGCATCTGCTACTGCAACTCTTGGTC
647 CGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTC
** * *
12771077 CGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACCCCGTATGCCTA
712 TAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
12771142 AGTCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGACCAGAGGGGTGGGATTCGCAA-CTCGA
777 AGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGA
** * * * * *
12771206 GGATCGACCGGGTCCCACTCT-CTGTGCTGTCGATCCTACTGCTGCAACCCTTGATCCA
841 GGATCGGTCGGGTCCCCCTCTGC-GTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTA
* * *** *
12771264 GTCCGATCTTATACTAAAAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * *
12771329 GGGC-GGGCACTATGTCGGCCATAGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGT
66 GGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
12771393 GGGTTTAGGTACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* **
12771458 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * *
12771523 TTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCCGAATGATTTTTGGCACCAAACT
261 TTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACT
* * **
12771587 TGGTAGACATGATCCTTGTATTTTTTTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTG
*
12771652 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCGCCATTTCAGACACTTTAATGGCTACTGGCAG
388 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
12771717 CAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAG
453 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
12771782 GGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGAACACACCCCCCGGCCCC
518 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCC
* * **
12771847 CCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCAGCGATGCTCCGGTGATGGTGCCCC
583 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* * *
12771912 GGCGAAGAAAAATGTGACACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
648 GGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCT
* ** * **
12771977 GGTCCAATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACTCAGAATGAACTCCGTATGCCTAA
713 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ** * *
12772042 GTCAACCCACGAAACGAGCGTGTGGGTGCTAAGTTGGCCAAAGGGGCGGGATGCGCAAGCCGGGG
778 GTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGG
** * * * *
12772107 ATCGG-CTGGGTCCCCCTCTATGTGCT-ACTGATCCTGCTGCCGTAACCCTCGGTCTG
843 ATCGGTC-GGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTCGATCTA
* * *
12772163 GT-TCGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCGACGAAATGACCGGGCGGG
1 GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * *
12772227 CGGGCGGTCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGTCGTGGATTGATAGGGTGGT
65 CGGGC-G--GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * ** *
12772292 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATTCCATTTTTATTTCATGTAAATTCA
127 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * ** * * *
12772357 TACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCGAGACGAAGCATTTTCTATTTTACAC
192 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* ** * * * * *
12772422 AATTTTCAAAACTTTTTGCAGTTCGAGATTTTTTTAAATTTTTTCGGAACGATTTTTAGCCCCAA
257 GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAA
*
12772487 ACATGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
321 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAA
12772551 GTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
385 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
12772615 CAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGA
450 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
12772680 TAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCG
515 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCC-CG
** * * * *
12772745 GCCCCCCCGATCACCGGAACCCTAATGCCACCGGTTAGGTTCTCCGTCGATGCTCCGACGATGGT
578 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGT
* *
12772810 GCCCCGGCGAAGAAAAATGCGACACCAACACATGCCCCAGCCCAGCATGTGCTG-T-CATAACCC
643 GCCCCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGC--AACCC
* * * *
12772873 TCGGTC-CGATCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTAGGAATGAACTCCGT
706 TCGGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
12772937 ATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGTGCTCAGCTGGCCAAAAGGGCGGGATGCGCA
770 ATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * * * * *
12773002 AGCCGGGGATCGATCGGGTCCCTCTCTACGTGCTATCGATCTTGCTACCACAACTCTCGGTCCTA
835 AGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGAT-CTA
* * ** * *
12773067 -T-TCATTCTTAGACTAGGAGCGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCCAGG
1 GTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
** * *
12773130 C-GGATGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
65 CGGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
12773194 TGGGTATAGGCACATCCTCATATTTC--CATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
130 TGGGTTTAGGCACATCTTCATATTTCTGCA--TGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
12773257 ACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAGGACTACTCTTTTTCTATTTTTCATG
193 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * *
12773322 ATTTTTGAAACTTTTTACGGTTCGGGTTTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAA
258 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAA
* * *
12773387 CTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGAACAAAAAAATTCAGCTAAAAACTCCAAG
322 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAG
*
12773452 TGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
386 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
12773517 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
451 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
12773582 AGGGGACCAATATAAGGGCCAACTACCAGCACGCATCGCACATCATGTGCACACACCCCCCCGG-
516 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCGGC
* * ** *
12773646 CCCCCCGATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTTCGATGATGCTCCAACGATGGTGC
580 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
** * * *
12773711 CCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCTTGTGCTGC-CCTAACCCTCG
645 CCCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGC-AACCCTCG
* * *
12773775 GT-TGGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
709 GTCT-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
12773839 CCTAAGTCAACTCACAAAACGAGCGTGCGAGTGCTCAGTCGGCCAGATGGGCGGGATGCGTAAGC
773 CCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * *
12773904 CGAGGATCGGTCGGGTCCCCCTCTACGTGCTGTTGATCCTGCTGTCACAACCCTCGAT-TCG
838 CGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCT-A
*
12773965 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----------
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
12774020 --GC-GGG--C-A-----G--A-A-AGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGT
66 GGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
12774069 GGGTTTAGGTATATCATCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
12774134 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTGTCATGATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * *
12774199 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTCTGGCCCCAACCTT
261 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTT
* * *
12774264 GGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCGGCTAAAAACTCAAAGTGT
325 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGT
12774329 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
389 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
12774394 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-GGGATAAG
454 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
12774458 GGACCAATATAAGGGCCAAGTAGCAGCACCCA-CTGCACATCATGTGCGCACACCCCTCCCCAGC
519 GGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGT--GCACACACC-CCCCGGC
* * * * * *
12774522 CCCCCCGATCATCGAAACCCCAATGTCGTCGGTCAGGTTCTTCGGTGATGCTCCGACGATGGTGC
580 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
* * * * **
12774587 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATATGCTGCCACAA-CC-C--
645 CCCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
*
12774648 TC-A----G---TT---C-------G-A-TCCG-AT-CCTAGACTGGGAATGAACTCCGTATGCC
710 TCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * * *
12774691 TAAGTCAACCCACGAAATGAGTGTGCAGGCGCACAGCTGGCCAGAGGGGCGAGATGCACAAGCCG
775 TAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * *
12774756 AGGATCGATCGGGCCCCCCTCTGCGTGCTG-CTGATCCTGCAGCCGTAACCTTC-AGTCCA
840 AGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTCGA-TCTA
* * * *
12774815 GT-TCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGGAACGAGTGGGC---
1 GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * * *
12774876 C-GAC-GGGCACTACATCGGCTAGAGGGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGG
65 CGGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
12774939 TGGGTTTAGGCACGTCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATAC
130 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
12775004 AGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGATGACTCGTTTTCTATTTTTCACGAT
195 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** * * * *
12775069 TTTCAAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGCCCCCAAACT
260 TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACT
*
12775134 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTG
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTG
* * *
12775199 TACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACATTAATAGCTACTGGCAG
388 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
12775264 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
453 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
12775329 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAGAC-CCCCCTCAGC
518 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGTGCACACACCCCC-CGGC
* * * *
12775393 GCCCCAGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGC
580 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
* * * *
12775458 CCCGGCGAAGAAAAATGTGGA-ACCAGCACATGCCTGAGCCCAGCATGTGCTACTGCAACCCTTG
645 CCCGGCGAAGAAAAATG-CGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCG
* *
12775522 GTCCAGTCCT-ATCTTAGACTTGGAATGAACTCCGTATGC
709 GTCTAGT-CTGATCTTAGACTGGGAATGAACTCCGTATGC
12775561 CTAAGCCAAC
Statistics
Matches: 7616, Mismatches: 898, Indels: 531
0.84 0.10 0.06
Matches are distributed among these distances:
849 1 0.00
850 172 0.02
851 2 0.00
852 3 0.00
853 1 0.00
854 1 0.00
858 4 0.00
860 1 0.00
861 2 0.00
864 2 0.00
866 1 0.00
867 90 0.01
868 219 0.03
869 19 0.00
870 32 0.00
871 466 0.06
872 63 0.01
873 134 0.02
874 725 0.10
875 127 0.02
876 205 0.03
877 3 0.00
878 6 0.00
879 182 0.02
880 7 0.00
881 7 0.00
882 2 0.00
883 3 0.00
884 4 0.00
885 2 0.00
886 61 0.01
887 94 0.01
888 1 0.00
889 2 0.00
890 15 0.00
892 2 0.00
893 1 0.00
894 1 0.00
895 7 0.00
896 7 0.00
897 13 0.00
898 416 0.05
899 918 0.12
900 539 0.07
901 987 0.13
902 173 0.02
903 580 0.08
904 28 0.00
905 216 0.03
906 3 0.00
907 100 0.01
908 8 0.00
909 76 0.01
910 12 0.00
911 67 0.01
912 115 0.02
913 228 0.03
914 55 0.01
915 3 0.00
916 2 0.00
917 1 0.00
918 1 0.00
920 1 0.00
921 1 0.00
922 1 0.00
923 1 0.00
924 8 0.00
925 15 0.00
926 354 0.05
927 17 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
GGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCC
GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGC
GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTAGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC
GGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTA
Found at i:12771115 original size:26 final size:26
Alignment explanation
Indices: 12771086--12771138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12771076 CCGGTCTGAT
* *
12771086 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
12771112 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
12771138 C
1 C
12771139 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:12772027 original size:899 final size:899
Alignment explanation
Indices: 12770278--12775560 Score: 6971
Period size: 899 Copynumber: 5.9 Consensus size: 899
12770268 CCGGTCTGAT
* * * **
12770278 CTGGCCAGAGGGGCTGGATGCGCAAGCC-AGGGATCGACTGGGTCACCCTCTGTGTGCTGTCGAT
1 CTGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGACCGGGTCCCCCTCTACGTGCTGTCGAT
* * *
12770342 CCTACTGCCGCAACCCT-TAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGC
65 CCTGCTGCCGCAACCCTCGA-TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
12770406 CAACCGACAAAACGAGCGGGCGGGCGGGCGGGCACTAAGCCAGCCAGAGAGACGGGATGCG-AAA
129 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* *
12770470 CCGTGGATCGATAAGGTGGTA-GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
12770534 TTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCTTTCACGTGAAGTTTCATGGCAAGACG
259 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
12770599 ACTTGTTTTATATTTTTCACGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTT-
324 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * * * *
12770663 GGAAGGAGTTTTGGCGCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAT
389 GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
12770728 ATTTCAGCTCAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
454 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
12770793 GACACTTTAATGGCTACAGGCAACAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGT
519 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGT
* *
12770858 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCACACATC
584 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** *
12770923 ATGTGTGCACACCCCTCCCGGCCCCCCCGATCGTCGGAACCCCAAGGCCGCCGGTCAGGTTCTCC
649 ATGTGCACACACCCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * ** * *
12770988 GGCGATCCTCCGACGTTGGTGCCCCGACGAAGAAAAATAAGGCACCAACAAATGCCCGAGCCCAG
713 -GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAG
* * * * * * *
12771053 CATCTGCTACTGCAACTCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
777 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* *
12771118 CTGGGAATGAACCCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAA
842 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAG
* * * * *
12771176 CCGACCAGAGGGGTGGGATTCGCAA-CTCGAGGATCGACCGGGTCCCACTCT-CTGTGCTGTCGA
1 CTGGCCAGAGGGGCGGGATGCGCAAGC-CGAGGATCGACCGGGTCCCCCTCTAC-GTGCTGTCGA
* * * * ***
12771239 TCCTACTGCTGCAACCCTTGATCCAGTCCGATCTTATACTAAAAATGAACTCCGTATGCCTAAGC
64 TCCTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
12771304 CAATCGACGAAACGAGCGGGCGGGCGGGCGGGCACTATGTCGGCCATAGAGACAGGATGCGCAAG
129 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * *
12771369 TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCTTGCCAATGCCAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
12771434 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACA
259 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
12771499 ACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTT
324 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT
* * * * * **
12771563 CCGAATGATTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGTGTGCACAAAA
388 CGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
12771628 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCGCCATTTC
453 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
12771693 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAG
518 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAG
* * *
12771758 TTCTTGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACAT
583 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
12771823 CATGTGAACACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCC
648 CATGTGCACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * *
12771887 AGCGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGTGACACCAACACATGCCCGAGCCCAG
713 -GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAG
* * *
12771952 CATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAGTGAACTCCGTATGCTTAGA
777 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
** * * *
12772017 CTCAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTAAG
842 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
12772075 TTGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTATGTGCT-ACTGAT
1 CTGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGTC-GAT
* * ** * *
12772139 CCTGCTGCCGTAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCC
65 CCTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
12772204 AACCGACGAAATGACCGGGCGGGCGGGCGGTCGGGCACTACGTTGGCCAGAGAGACGGGATGCGC
130 AACCGACG-AA--A-CGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * * *
12772269 AAGTCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATTC
191 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
** * * *
12772334 CATTTTTATTTCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCGAG
256 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * * * ** * * *
12772399 ACGAAGCATTTTCTATTTTACACAATTTTCAAAACTTTTTGCAGTTCGAGATTTTTTTAAATTTT
321 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
12772464 TTCGGAACGATTTTTAGCCCCAAACATGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAA
386 TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
12772528 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATT
451 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
12772592 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTG
516 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTG
* *
12772657 AGTTCTCGAGGTTTCATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCAC
581 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * *
12772722 ATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCACCGGAACCCTAATGCCACCGGTTAGGTTC
646 ATCATGTGCACACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* *
12772787 TCCGTCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGACACCAACACATGCCCCAGCC
710 TCCG-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCC
* ** * *
12772852 CAGCATGTGCTGTCATAACCCTCGGTCCGATCCGATCTTAGACTGGGAATAAACTCCGTATGCTT
774 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
12772917 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGTGCTCAG
839 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAG
* * * * * *
12772978 CTGGCCAAAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTACGTGCTATCGATC
1 CTGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATC
* * * * * * * **
12773043 TTGCTACCACAACTCTCGGTCCTA-TTC-ATTCTTAGACTAGGAGCGAACTCCGTATGCCTAAGC
66 CTGCTGCCGCAACCCTCGATCC-AGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * ** *
12773106 CAACCGACGAAACGAGCGGCCAGGCGGATGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAG
129 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * *
12773171 CCATGGATCGATAGGGTGGTAGGTGGGTATAGGCACATCCTCATATTTC--CATGTGCCAATGCC
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA--TGCCAATGCC
* * *
12773234 ATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAGGA
257 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
12773299 CTACTCTTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGTTTTTTTAAAATTTTT
322 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * *
12773364 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGAACAAA
387 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
12773429 AAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTT
452 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
12773494 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
517 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGA
* * * *
12773559 GTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAACTACCAGCACGCATCGCACA
582 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
12773624 TCATGTGCACACACCCCCCCGG-CCCCCCGATCGACGGAACCCCAATGCCGCCGGTCAGGTTCTT
647 TCATGTGCACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
12773688 CGATGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
712 CG-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCCCA
* ** *
12773753 GCTTGTGCTGCC-CTAACCCTCGGTTGGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTA
776 GCATGTGCTGCCGC-AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
12773817 GACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAGCGTGCGAGTGCTCAG
840 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAG
* * ** *
12773877 -TCGGCCAGATGGGCGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGTTGAT
1 CT-GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGTCGAT
* * * *
12773941 CCTGCTGTCACAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
65 CCTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
12774006 AACCGACGAAACGA------------GCGGG--C-A-----G--A-A-AGACGGGATGCGCAAGC
130 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
12774047 CGTGGATCGATA-GGTGGTAGGTGGGTTTAGGTATATCATCATATTTTTGCATGCCAATGCCATT
195 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
12774111 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
260 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
12774176 CTCGTTTTCTATTTGTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
325 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * * * *
12774241 GAAGGAATTCTGGCCCCAACCTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAATA
390 GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
12774306 ATTCGGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
455 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
12774371 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
520 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTT
* * *
12774436 CTCGAGGTTTGATG-GGGATAAGGGACCAATATAAGGGCCAAGTAGCAGCACCCA-CTGCACATC
585 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATC
* * * * * *
12774499 ATGTGCGCACACCCCTCCCCAGCCCCCCCGATCATCGAAACCCCAATGTCGTCGGTCAGGTTCTT
649 ATGTGCACACA-CCC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-T
* * * * *
12774564 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCA
711 CCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCCCA
* * *
12774629 GCATATGCTGCCACAACCCTCAGT----T-CGATC-----C-------G-A-T-C-----C-TAG
776 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
12774668 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCAGGCGCACAG
841 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAG
* * * * *
12774727 CTGGCCAGAGGGGCGAGATGCACAAGCCGAGGATCGATCGGGCCCCCCTCTGCGTGCTG-CTGAT
1 CTGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGTC-GAT
* * * * * *
12774791 CCTGCAGCCGTAACCTTC-AGTCCAGTTCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGC
65 CCTGCTGCCGCAACCCTCGA-TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
12774855 CAACCGACGGAACGAGTGGGC---C-GACGGGCACTACATCGGCTAGAGGGACGGGATGCGCAAG
129 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* *
12774916 CCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTGCATGCCAATGCCAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * *
12774981 TTTTATGGCTTTTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGATG
259 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * * * *
12775046 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTT
324 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* *
12775111 GGAAGGATTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
389 GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
12775176 ACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCA
454 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
12775241 GACACATTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
519 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGT
12775306 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
584 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * * * * *
12775371 ATGTGTGCAGACCCCCCTCAGCGCCCCAGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
649 ATGTGCACACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
12775436 AGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGA-ACCAGCACATGCCTGAGCCCA
713 -GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-CGACACCAACACATGCCCGAGCCCA
* * * * * *
12775500 GCATGTGCTACTGCAACCCTTGGTCCAGTCCTATCTTAGACTTGGAATGAACTCCGTATGC
776 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
12775561 CTAAGCCAAC
Statistics
Matches: 3866, Mismatches: 427, Indels: 186
0.86 0.10 0.04
Matches are distributed among these distances:
849 1 0.00
850 173 0.04
851 2 0.00
857 1 0.00
858 5 0.00
859 1 0.00
860 1 0.00
861 1 0.00
866 2 0.00
868 1 0.00
869 1 0.00
870 32 0.01
871 481 0.12
872 56 0.01
873 54 0.01
874 366 0.09
875 34 0.01
876 120 0.03
877 4 0.00
879 1 0.00
881 1 0.00
884 1 0.00
885 1 0.00
887 3 0.00
888 1 0.00
889 1 0.00
890 1 0.00
891 1 0.00
896 1 0.00
897 3 0.00
898 161 0.04
899 911 0.24
900 228 0.06
901 559 0.14
902 69 0.02
903 585 0.15
904 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
CTGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATC
CTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAG
Found at i:12772917 original size:26 final size:26
Alignment explanation
Indices: 12772888--12772940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12772878 CCGATCCGAT
*
12772888 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
12772914 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
12772940 C
1 C
12772941 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:12773823 original size:26 final size:26
Alignment explanation
Indices: 12773787--12773839 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12773777 TGGGTCCGAT
*
12773787 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12773813 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12773839 C
1 C
12773840 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12776950 original size:26 final size:26
Alignment explanation
Indices: 12776914--12776966 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12776904 CTGATCCAAT
12776914 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12776940 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12776966 C
1 C
12776967 CTAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12778709 original size:26 final size:26
Alignment explanation
Indices: 12778673--12778725 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12778663 TCGATCCGAT
12778673 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
12778699 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
12778725 C
1 C
12778726 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:12779544 original size:900 final size:890
Alignment explanation
Indices: 12776874--12781374 Score: 5494
Period size: 873 Copynumber: 5.1 Consensus size: 890
12776864 TGAGTTCTCA
* ** * *
12776874 AGCCCAGCATGTGCTGTCGTAACCC-CTGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTA
1 AGCCCAGCATGTGCTGCCACAACCCTC-GTTC-GATCCGATCTTAGACTGGGAATGAACTCCGTA
* * **
12776938 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGTGGGCAATCA
64 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * * * * **
12777003 GTCGGCCAGA-GGGTGGGATGCGCAAGCCGACGAGCAGTCGGGTCCCCCTCTGCATGCTACCAAT
129 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGAT
** * **
12777067 CCTGCTATCGCAACCCTC-AGTTTGGTCTGATCTTAGACTGGGAATGAACTCAATATGCCTAAGC
194 CCTGCTGCCGCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
12777131 CAACCGACTAAACGAGCGGGCGGACGGGCGGGCGGCCACTATGCCGGCCAGAGAGACGGGATGCG
258 CAACTGACGAAATGAGC---AGG-CGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCG
*
12777196 CAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
319 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
12777261 CTATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
384 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
** * ** * *
12777326 GACAACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGATTCAGGATTTATTAAAATTT
449 GATGACTCGTTTTCTATTTTTCACGA--TTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA---
* *
12777391 TTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACA
509 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
12777456 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCAT
574 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * **
12777521 TTCATACACGTTACTAGCTACTGGCAGCAAACAGGTAAAA-CTCAAATGCTCTTTAAGGGG-GCA
639 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTG--
* * * * *
12777584 TGAGTTCTCAAAGTTTGATGAGGGATATGGGGCCAATATAAGGTCCAGGTACTAGCACCCATCGC
702 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
12777649 ACATCATGTGCACACACCACCCCCGGCCCTCCGATCGTCGGAACCTCAATGCCGCC-AGTCAGGT
767 ACATCATGTGCGCACA-C-CCCCCGGCCCCCCGATCGTCGGAACC-CAATGTCACCGA-TCAGGT
* * *
12777713 TCTCCGGCT-ATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCATATGCCTG
828 TCTCCGG-TGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTG
**
12777776 AGCCCAGCATGTGCTGCTGCAA-CC-C--TCG----G-TC-----C---G-AT---CT--G-AT-
1 AGCCCAGCATGTGCTGCCACAACCCTCGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
12777816 CTTAGACTGGGAATGAACTTCGTTTGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCCGC
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
12777881 CGGCCAGAGGGGCAGGATGCACAATCCGGGGATCGGTCGGGTCCCCCTCTTCGTGCTGCTGATTC
131 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * **
12777946 TACTACCGTAACCCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCA
196 TGCTGCCGCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
12778010 ACTGACTAAAT--G-A-----GTGGGCGGGCACTACGCCAGCCAGAGAGACGGGATAAGCAAGCC
260 ACTGACGAAATGAGCAGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * * *
12778067 GTGGATCGA-ACGGTGGTAGGTGGGTTTAGGCACATCCTAATGTTTCTACGTGCCAATGCCATTT
325 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
**
12778131 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTGAGATGAC
390 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
* * ***
12778196 TCGTTTTCTATTTTTCACGATTTTAAGCACTTTTTACGGTTCGGGATTTTTTAAAATTTT--TTC
455 TCGTTTTCTATTTTTCACGATTTGAA--ACTTTTTACGGTTCAGGATTTTTTAAAATTTTGGAAG
* *
12778259 GA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAGGCATAAAAAAATTC
518 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
12778323 AGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACAC
583 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
12778388 TTTAAT-GCTACAGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
648 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCA
12778452 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
712 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
12778517 CGCACACCCCCCGACCCCCCTGATCGTCGGAACCCCAATGTTACCGGTCAGGTTCTCTGGTGATG
777 CGCACACCCCCCGGCCCCCC-GATCGTCGGAA-CCCAATGTCACCGATCAGGTTCTCCGGTGATG
* *
12778582 CTCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCG
840 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTG
*
12778633 AGCCCAGCATGTGCTGCCACAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTACGTAT
1 AGCCCAGCATGTGCTGCCACAACCCTC-GTTCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
12778698 GCTTAGTCTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
65 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
12778763 CCGACCAGAGAGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCAGCATACTGCCGATC
130 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATC
**
12778828 CTGCTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
195 CTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
**
12778893 ACTGACGAAATGAGCAGGCGGGCGGGCGAGTGGGCACTATGCCGATCAGAGAGACGGGATGCGCA
260 ACTGACGAAATGAGCAGGCGGGCGGGC----GGGCACTATGCCGGCCAGAGAGACGGGATGCGCA
* * *
12778958 AGCCGTGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
321 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
12779023 ATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTACGCCTTCACGTGAAGTTTGATGGCAAGA
386 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
12779088 TGACCCGTTTTCTATTTTTCACGATCTTCGAAACCTTTTACGGTTTAAGATTTTTTAAAATTTTG
451 TGACTCGTTTTCTATTTTTCACGAT-TT-GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTG
*
12779153 GAAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
514 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
12779218 ATTCAGCTAAAAACTTGAAATGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
579 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
12779283 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTT
644 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTT
* *** *
12779348 CTCAAGGTTTGATGAGGGATATGGGGTTGATATAAGGGCCAAGTACAAGCACCCATCGCACATCA
708 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
12779413 TGTGCTCACACCCCCCTGGCCACTCGATCGCCGGAATCCCAATGCCACCGATCAGGTTCTCCGGT
773 TGTGCGCACACCCCCC-GGCCCCCCGATCGTCGGAA-CCCAATGTCACCGATCAGGTTCTCCGGT
** * * * *
12779478 GATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAACGTGGCATCAGAACATGCCTG
836 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTG
* * * * *
12779533 AGCCAAGCATGTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
1 AGCCCAGCATGTGCTGCCACAACCCTC-GTTCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
12779598 GCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGTGAGCAGGCGCTCAG
65 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
12779663 CCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTTGATC
130 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATC
* * ** *
12779728 CTACTGTCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
195 CTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * **
12779793 ACCGATGAAATGAGC-GGACGGGCGGGCGGGCACTAGGTTGGCCAGAGAGACGGGATGCGCAAGC
260 ACTGACGAAATGAGCAGG-CGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
12779857 CGTGGATCGGT-GGGCTGGTAGGTGGATTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
324 CGTGGATCGATAGGG-TGGTAGGTGG-GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
12779921 TTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCGTTCATGTGAAGTTTCATGGCAAGAT
387 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
12779986 GACTCGTTTTCTATTTTT--C-A--T--AA-TTTTTA------A--A------AAAATTTTCGGA
452 GACTCGTTTTCTATTTTTCACGATTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTT-GGA
* * *
12780029 CA-GAGTTTTGGCCCCAAACTTGGCAGACATGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAA
516 -AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
12780092 TTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTTAGA
580 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* ** *
12780157 CACTTTAATGGCTGCTCTCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGCGTGTGAGTTC
645 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTC
* * *
12780222 T-AGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGTACATCA
709 TCA-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * * * *
12780286 TGTGCGCACACCCCTCGGCCCCCCCGATCGTCATAACCCCAATGTCATCGGTCTGGTTCTCCGAT
773 TGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAA-CCCAATGTCACCGATCAGGTTCTCCGGT
* * * * *
12780351 GATGCTCCGACGATGGTGCCCTGATGAAGAAAAGTGTGGCACCAGCACAAGCCCG
836 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTG
* * * * *
12780406 AGCCCAGCATGTGCTGCCATAACCCTCGGTCTAGA-CCAATCTTAGAGTGAGAATGAACTCCGTA
1 AGCCCAGCATGTGCTGCCACAACCCTC-GT-TCGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
12780470 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGCGTGCGGGCGCACA
64 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
12780535 GCCGGCTAGAGGGGCAGGATGCCCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTTGAT
129 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGAT
* * * * *
12780600 CCTGCTGCCGTAACCCTCGGTCTGATTTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
194 CCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
12780665 GACTGACAAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-
259 AACTGACGAAATGAGCAGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGC
*
12780729 CGATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-ATTATTTCTGCATGCCAATGCCA
324 CG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA-TATTTCTGCATGCCAATGCCA
* * * *
12780793 TTTTTATGGCTTGTAAATTAATACAACGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGAC
387 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
* * *
12780858 GACTCGTTTTTTATTTTTTACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTT
452 GACTCGTTTTCTATTTTTCACGA--TTTGAAACTTTTTACGGTTCAGGATTTTTT-AAAA--TTT
* * *
12780923 TTGAAGGATTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTATTGTTT-TTGGCATGCACAAA
512 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAA
*
12780987 AAAATTCAGCTAAAAACTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
576 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
12781052 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
641 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGA
* * * *
12781117 GTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCTGCACCCATCGCACA
705 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
12781182 TCATGTGCGCACACCCCCTTGGCCCCCCCGATCG-CTGGAACCTCAATGTCGCC-AGTCAGGTTC
770 TCATGTGCGCACACCCCC-CGG-CCCCCCGATCGTC-GGAACC-CAATGTCACCGA-TCAGGTTC
* * * * *
12781245 TCCGGCGACGCTCCGGC-ATGGTGCCCTGATGAAGAAAAATGTGGCACCAGCACATG-CTCG
830 TCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCT-G
* * * * * *
12781305 AGCCCAGCATGTGCT-ACAGCAATCCTCGGTCTGGTCCGATCTTAGACTGGGAATCAACTCTGTA
1 AGCCCAGCATGTGCTGCCA-CAACCCTCGTTC-GATCCGATCTTAGACTGGGAATGAACTCCGTA
12781369 TGCTTA
64 TGCTTA
12781375 AAAACTCGAA
Statistics
Matches: 3108, Mismatches: 380, Indels: 225
0.84 0.10 0.06
Matches are distributed among these distances:
856 12 0.00
857 122 0.04
858 219 0.07
859 7 0.00
860 1 0.00
861 4 0.00
862 8 0.00
864 151 0.05
865 46 0.01
866 1 0.00
867 2 0.00
871 1 0.00
872 117 0.04
873 567 0.18
874 61 0.02
875 4 0.00
876 66 0.02
877 110 0.04
878 1 0.00
879 4 0.00
880 2 0.00
881 4 0.00
882 8 0.00
883 177 0.06
884 2 0.00
885 1 0.00
886 1 0.00
887 6 0.00
888 2 0.00
890 1 0.00
891 6 0.00
892 2 0.00
894 1 0.00
895 44 0.01
896 210 0.07
897 120 0.04
898 59 0.02
899 422 0.14
900 509 0.16
901 8 0.00
902 19 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
AGCCCAGCATGTGCTGCCACAACCCTCGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CTGACGAAATGAGCAGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
CGTTTTCTATTTTTCACGATTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCCGATCGTCGGAACCCAATGTCACCGATCAGGTTCTCCGGTGATGCTCCGA
CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTG
Found at i:12779602 original size:26 final size:26
Alignment explanation
Indices: 12779573--12779625 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12779563 CCGGTCCGAT
*
12779573 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
12779599 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
12779625 C
1 C
12779626 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:12780485 original size:26 final size:26
Alignment explanation
Indices: 12780446--12780498 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12780436 CTAGACCAAT
*
12780446 CTTAGAGTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
12780472 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12780498 C
1 C
12780499 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:12783509 original size:26 final size:26
Alignment explanation
Indices: 12783470--12783522 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12783460 CTATTCTGAT
*
12783470 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12783496 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12783522 C
1 C
12783523 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12783836 original size:892 final size:885
Alignment explanation
Indices: 12781715--12784283 Score: 3659
Period size: 892 Copynumber: 2.9 Consensus size: 885
12781705 CCTCAGTCCG
* *
12781715 CTCCG-AT-CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGG
1 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCACG-GG
* *
12781778 -GCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCGGGGGATCGACCGGGT--CCC-C-T-T-C
65 TGCTCT-AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTTGTGC
* * * *
12781836 T--G--CATGCTACCGTAACCCTGGGTCTAGTCTGATCTTAGAATGGGAATGAACTCCGTATGCC
129 TCCGATCATGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
12781897 TAAGCCAACCGACGAAATGA-----GTGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATG
194 TAAGCCAACCGACGAAACGAGCGGGGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
12781957 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG-TGCCA
259 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGCTGCCA
*
12782021 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAG
322 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* ** *
12782086 CAAGACGACTCGTTT-TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCG-GTATTTTTTAA
387 CAAGACGACTCGTTTCT-TATTTTCCATGATTTTCAAAACTTTTTACGGTTCGAG-ATTTTTTAA
* * * * * * * *
12782149 AATTTTTTCGGAAGGAGTTTT-GTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
450 AATTTTTTGGGAAGGTGTTTTAG-CCCCAAACTTGATGGTCATGACCCTTGTATTTTTGTTGGCT
*
12782213 TGCACAGAAAA-ATTCAGG-TAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAT
514 TGCACA-AAAACATTC-GGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTT-AAAAAAG
* *
12782275 TGTGCCCATTTCATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
576 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
12782340 AGGGGGTGTGAGTTCTTGAGGTCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
641 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * *
12782405 CCCATCTCACATCATGTGCGCACA-CCCCCTGGCTCCTCCGATCGCCGAAACCCCAATGCCGCCG
706 CCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGAT-GACGGAACCCCAATGCCACCG
* *
12782469 GTCAGGTTCTCTGCGATCCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATG
770 GTCAGG-----T----T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG
* * * *
12782534 CCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAA
825 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAA
* * * * * *
12782595 CTTCGTATGCTTAGAATGGGAATGAACTCTGTATGGCTAAGTCAACTCACGAAATGAGCATGCGG
1 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA--CGG
* * * * * * *
12782660 GTACT-TAGCAC-GCCAGAGGGGCGGGATGCACAAGCCGAGGATCGATCGAGTCCCCTTCTGCGT
64 GTGCTCTAGC-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT-TGT
* * * * * * *
12782723 GCTGCCGATCCTGTTGCCGCAACCTTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
127 GCT-CCGATCATGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
12782788 GTCTAAGCCAACCGACGAAACGAGCGGGTGGATGGGAGGGCGGGCACTACGCCGGCCAGAGAGAC
191 GCCTAAGCCAACCGACGAAACGAGCGGG-GG--GGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
* * * *
12782853 GGGATGCGTAAGCCATGGATCGATAGGGTGATAGGTGGGTTTAGGTACATCTTCATATTTTTGCG
253 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGC-
* * *
12782918 TGCCAATACCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGATT
317 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
12782983 CATGGCAAGACGACTCGTTTCTTATTTTCCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTT
382 CATGGCAAGACGACTCGTTTCTTATTTTCCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTT
12783048 TAAAATTTTTTGGGAAGGTGTTTTAGCCCCAAACTTGATGGTCATGACCCTTGTATTTTTGTTGG
447 TAAAATTTTTTGGGAAGGTGTTTTAGCCCCAAACTTGATGGTCATGACCCTTGTATTTTTGTTGG
*
12783113 CTTGCACAAAAACATTCGGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCACTTTAAAAAAGT
512 CTTGCACAAAAACATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTTAAAAAAGT
12783178 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
577 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
12783243 AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
642 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
** * * *
12783308 CCAGGGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATGTCGGAACCCTAATGCCACCGGT
707 CCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATGACGGAACCCCAATGCCACCGGT
12783373 CAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
772 CAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
* * * *
12783438 ATGTGTTGCTGCAACCCTCGGTCTATTCTGATCTTAGACTGTGAATGAA
837 ATGTGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAA
*
12783487 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGTGCACGG
1 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-C-GAGCACGG
*
12783552 GTGCTCTA-CCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATC-AGCCGGGTCCCCCTCTATGT
64 GTGCTCTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCT-TGT
* *
12783615 GCTACCGATCTTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTAT
127 GCT-CCGATCATGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* **
12783680 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGGTAAGAGAGAC
191 GCCTAAGCCAACCGACGAAACGAGCGGG-GGG--GGCGGGCGGGCACTACGCCGGCCAGAGAGAC
*
12783745 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTTTGCA
253 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGC-
*
12783810 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTT
317 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
12783875 CATGGCAAGACGACTCGTTTCTTATTTTCCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTT
382 CATGGCAAGACGACTCGTTTCTTATTTTCCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTT
12783940 TAAAATTTTTTGGGAAGGTGTTTTAGCCCCAAACTTGATGGTCATGACCCTTGTATTTTTGTTGG
447 TAAAATTTTTTGGGAAGGTGTTTTAGCCCCAAACTTGATGGTCATGACCCTTGTATTTTTGTTGG
12784005 CTTGCACAAAAACATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTTAAAAAAGT
512 CTTGCACAAAAACATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTTAAAAAAGT
* *
12784070 GTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAA
577 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
12784135 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATCTAAGGGCCAAGTACCAGCAC
642 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * ** *
12784200 CCATCGCACATCATTTGCGCACACAGCCCCTGGCCTGCCCGATCACTGGAACCCCAATGCCACCG
707 CCATCGCACATCATGTGCGCACAC-CCCCCTGGCCCCCCCGATGAC-GGAACCCCAATGCCACCG
*
12784265 GTCAGGTTCTCCGATGATG
770 GTCAGGTTCTCCGACGATG
12784284 CTCCGGCGAT
Statistics
Matches: 1507, Mismatches: 138, Indels: 74
0.88 0.08 0.04
Matches are distributed among these distances:
880 4 0.00
881 2 0.00
882 83 0.06
883 4 0.00
884 4 0.00
885 1 0.00
888 1 0.00
889 2 0.00
890 1 0.00
891 2 0.00
892 770 0.51
893 18 0.01
894 105 0.07
897 1 0.00
900 3 0.00
901 7 0.00
902 478 0.32
903 21 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCACGGGT
GCTCTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTTGTGCTC
CGATCATGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGCCAACCGACGAAACGAGCGGGGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTCTTATTTTCCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
TTGGGAAGGTGTTTTAGCCCCAAACTTGATGGTCATGACCCTTGTATTTTTGTTGGCTTGCACAA
AAACATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTTAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCTGGCCCCCCCGATGACGGAACCCCAATGCCACCGGTCAGGTTCTC
CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAA
Found at i:12784745 original size:26 final size:26
Alignment explanation
Indices: 12784716--12784768 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12784706 CTGGTCCGAT
*
12784716 CTTACACTGGGAAAGAACTCCGTATG
1 CTTAAACTGGGAAAGAACTCCGTATG
*
12784742 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAAAGAACTCCGTATG
12784768 C
1 C
12784769 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAAAGAACTCCGTATG
Found at i:12784958 original size:4 final size:4
Alignment explanation
Indices: 12784949--12784974 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
12784939 GATGAAACGA
12784949 GCGG GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GC
12784975 ACTACGTCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:12785651 original size:26 final size:26
Alignment explanation
Indices: 12785622--12785674 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12785612 CCAGTCCGAT
12785622 CTTACACTGGGAAAGAACTCCGTATG
1 CTTACACTGGGAAAGAACTCCGTATG
* *
12785648 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAAAGAACTCCGTATG
12785674 C
1 C
12785675 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAAAGAACTCCGTATG
Found at i:12786525 original size:26 final size:26
Alignment explanation
Indices: 12786496--12786548 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12786486 CTGGTCCGAT
*
12786496 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12786522 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12786548 C
1 C
12786549 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12786877 original size:874 final size:874
Alignment explanation
Indices: 12784333--12797037 Score: 7571
Period size: 900 Copynumber: 14.2 Consensus size: 874
12784323 AACACATGAC
* * *
12784333 CCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGA
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
12784398 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAGTGGCAACAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
12784463 TCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGATGGATAAGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAA
* * * * *
12784528 GGGCCAAGTACCAGCGCCCACCGCACATCATGTGCTCTCACCCCCCGCCCCCCGATCGTTGGAAC
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGGAAC
* * ** *
12784593 CCCAATGCCGCCGGTTAGGTTCTCCGGCGACGCTTCGGCGATGGTGCCCCGGTGAAGAAAAATGC
261 CCCAATGCCGCCGGTCAGGTTCTCCGACGACGC-TCGGCGATGGTGCCCCGACGAAAAAAAATGC
* * * *
12784658 GGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCTGGTCCGATCTTACAC
325 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTACAC
* *
12784723 TGGGAAAGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
390 TGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
12784788 AAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGA-CTGGGTCCC
455 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCTGGGTCCC
* * * * *
12784852 CCTCTGCGTGCTGCCGATCCTACCACCATAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGA
520 CCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* *
12784917 ACTCCGTATTCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCGGGCGGGCACTACGT
585 ACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GCGGGCGGGCGGGCGGGCACTACGT
* * *
12784982 CGGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTT
642 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
**
12785047 TCATATTTCTACGTGCCAATGCCATTTTTATGAATTGTAAATTCATACAATGGTCCCTTAAGCCT
707 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
12785112 TCTCGTGAAGTTTCATGGCAAGACGACTCGATTTCTATTTTTCGTGATTTTTTAAACTTTTTGCG
772 TCACGTGAAGTTTCATGGCAAGACAACTCG--------TTTTC-T-ACTTTTT--AC----TAC-
*
12785177 GTTTGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
820 ------GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
12785238 CCTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
12785303 GACCATTTGTAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCTGGAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * **
12785368 TCTCAAATGCTGTTTCAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGAACAATATAA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAA
* *
12785433 GGGCCAAGTACCAGCGCCCATCGCACATCATGTGCGCTCACCCCCCGGCCCCCCGATCGTCGGAA
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCGATCGTCGGAA
* ** * *
12785498 CCCCAATGCCGCCGGTCAGGTTCTCCGACGACGGTCCGGCGATGGTGCCCCGGTGAAGAGAAATG
260 CCCCAATGCCGCCGGTCAGGTTCTCCGACGACGCT-CGGCGATGGTGCCCCGACGAAAAAAAATG
* * *
12785563 CGGCACCAACACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTACA
324 CGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTACA
12785628 CTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
389 CTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * ** * *
12785693 CGAGCGTACGGGTGCTCAGCCGACCAGGGGGGCGGGATGCATAAGCCGGGGATCG-GCTGGGTCC
454 CGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCTGGGTCC
* * * * *
12785757 CCCTCGGCGTGTTAG-CGATCTTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
519 CCCTCTGCGTGCT-GCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* ** * * * * *
12785821 GAACACCGTATGCCTAAGCCAACTAACGAAATGAGCGGGCGGGCGAGCTGGCACTATGCCGGCCA
583 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCA
*
12785886 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATAT
648 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** *
12785951 TTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACAT
713 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
*
12786016 GAAGTTTCGTGGCAAGACAACTCGTTTTCT-CTTTTT-C-ACGATTTTTTAAAATTTTTTCGGAA
778 GAAGTTTCATGGCAAGACAACTCGTTTTCTACTTTTTACTACGATTTTTTAAAATTTTTTCGGAA
* **
12786078 GGAGTTTCAGCCCCAAACTTGGTAGACGTGAT
843 GGATTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
12786110 CCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGC
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
12786175 GACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTCAATGGCTACTGGCAGCAAACCTATAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
12786240 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTTATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAA
*
12786305 GGGCCAAGTACCAGCACACATCGCACATCATGTGCGCACACCACCCCGGCCCACCCGATCGTCGG
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCC-GCCC-CCCGATCGTCGG
* * * *
12786370 AACCGCAATGCCGTCGGTCAGGTTCTCCAACGATGCTCAGGCGATGGTGCCCCGACGAAAAAAAA
258 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGACGCTC-GGCGATGGTGCCCCGACGAAAAAAAA
* * * * * *
12786435 TGCGGCACCAACAGATGCCCTAGCCCAGCATGTGCTGCCAAAACCCTTGTTCTGGTCCGATCTTA
322 TGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTA
** * *
12786500 GGCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGA
387 CACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
12786565 AACGAGCGTGCGGGTGCTCAGCCGGCTAAATGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGT
452 AACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCTGGGT
* * ** * * ** *
12786629 CCCCTTCTACGTGCTGCCGATCCTGCTGTCGTAACTCTCGATCCGGTCCCTTATTAGACTGGGAA
517 CCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * *
12786694 TGAACTTCATATGCCTAAGCCAACCGACGAAACGAGCTGGTGGGCGGGCGGGCACTACGTCGGCC
582 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCC
*
12786759 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATA
647 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
12786824 TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATTGTCCCTTAAGCCTTCACG
712 TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* **
12786889 TGAAGTTTCATTGCAAGATGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTTCC
777 TGAAGTTTCATGGCAAGACAACTCGTTTTC------T-AC--TTTTT---AC----TA------C
* *
12786954 AGATTTTTTAAAATTTTTTCAGAGGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
820 -GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
12787010 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
12787075 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * ** *
12787140 TCTCAAATACTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGGGGGCCAATATAC
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAA
* * *
12787205 GGGCCAAGTAGCAGCACCCATTGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAT
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-CCCCCCGATCGTCGGAA
* * * * * *
12787270 CCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGCGACGTTGCCCCGAC-AAAGAAAAATG
260 CCCCAATGCCGCCGGTCAGGTTCTCCGACGACGCTCGGCGATGGTGCCCCGACGAAA-AAAAATG
* * * * *
12787334 CGGCACCAATACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGATCCGGTCTGATCTTAGA
324 CGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTACA
** * *
12787399 CTGGGATTGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAA
389 CTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * *
12787464 CGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGTGCAAGCCAGGGATCGATC-GGGTCC
454 CGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCTGGGTCC
** * * * * * **
12787528 TTCTCCGCGTGCTGCCAATCCTACTGCC-TCAACCCTTGGTTTGGTCCGATCTTAGACTGGGAAT
519 CCCTCTGCGTGCTGCCGATCCTGCTACCGT-AACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
*** * * * ** * **
12787592 GAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTA
583 GAACTCCGTATGC-----CTA--AGCCAA--CCG-A--CGAAA--CGA-GC--G-GGCGGGCGGG
* * * * * * * * **
12787657 CGGGTGCTCAAC-T-GGCCAGAGGGGCGGGATGCG-AAGTCGAGGATCGGTCGGGTCCCCCTCTA
630 C-GG-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT-----GGTA
** * ** ** *
12787719 CGTGCTGCCGATCCTGCTACTGTAACCCTCAGTCTGGTC-TGATCTTAGAC-TGGGAATG-AACT
688 -G-G-TG--G-----G-T--T-T-AGGCACA-TCT--TCAT-AT-TTCTACGTGCCAATGCCA-T
*** * * * *** * * * * ** *
12787781 CCGTATGCCTAAGCCAACCGACGAAACGAACGGGTGGGAGGGCAC-TACGCCGGC-CAT-AGAGA
732 TTTTATGGCT-TG-TAA-ATTC-ATAC-AA----T----GGTCCCTTAAGCCTTCACGTGA-AG-
*** * * ** * * * * *
12787843 TGGGATGCGCAAGCCATGGA-TCGATAGGGTGGTAGGTGGGTTTAGGC-AC-A--TCTTCATATT
782 TTTCATG-GCAAGACA---ACTCG-T---TTTCTA-CT--TTTTA--CTACGATTTTTTAAAATT
* * *** ** * * *
12787903 TCTATGT-GCCAATGCCATTTTTATGGCTTGTAAA-TTCATACAACGGTCCCTTAAG
834 T-T-T-TCG-GAA-G-GA-TTTT-TGGC-CCCAAACTTGGTA-GAC-G-----TGAT
** ** * *** *** * * * ****
12787958 CCTTCACGTGAAGTTTCATGGCAATACGACTCGTTTTCTATTTTTCACGATTTTCAAACCTTTTT
1 CCTT---GT-ATTTTTGTTGGC-AT--G-CAC----AAAAAAATTCA-G---CTAAAAACTCGAA
* * ** * ** ** *
12788023 GCGGTTCGGGATTTT-TTAAAATTTTTTTGAAAGGAGTTTTAGCCCCAAACTTGGTAGACATGAT
50 G-TGTACAAGATTTTGTGACCA----TTTGAAAAAAG-TGT--CCCC--A-TT--T---CA-GA-
* * ** ** * *** *** **
12788087 CCCTGT-ATGTTTTTTGGCATGCACAA----AAAAAT-TC--A-GCT-AAAAACTCGAAGT--G-
97 CACTTTAATGGCTACTGGCA-GCA-AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * ** ** * * * * ** ** *
12788139 T-ACAAGATTTTG-TGA-CCAT---TTG--AA-AAAATGTCCCA-TTTCAGACACTTTAATGGC-
160 TCTCAAG-GTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAG-CAC--CCATCGCA
* * * **** * * * **
12788193 TA-C-TG-GCAGCA-A--ACCTG---TAAAATC-TC-AAATGCTCTACAA-G--G-GGGTGTGAG
221 CATCATGTGC-GCACACCCCCCGCCCCCCGATCGTCGGAA--C-C-CCAATGCCGCCGGTCAG-G
* * * * * * * * * ** * *
12788243 TTCT-TGAGGTTCGAT-GAGGGATAGG-G----GGCCAATATAAGGGCCAAGTACCAACAC---C
280 TTCTCCGACG-ACGCTCG-GCGAT-GGTGCCCCGACGAAAAAAAATG-C-GGCACCAACACATGC
*** * * * * * ** * * * * * *
12788298 CATCGCACATCATATGC-G-CAC-ACCCCCCG-CC-CCCCGATCATCGAAAC-CGCAATG-CCGT
340 CCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATC-T-TACACTGGGAAAGAAC-T
* * * * * * ***
12788356 CGGTCA-GGTT---CTCGGG--TGATGCTCCG-GTGAC--GGTGC--CCCGACG-AA-GAAAAAT
402 CCGT-ATGCTTAGACT-GGGAATGA-ACTCCGTATGCCTAAGT-CAACCC-ACGAAACG-AGCGT
* ** * * * ** * * * * ** * ***
12788408 AC-GGCAC-CAACACATGCCCGAGCCCAGCATGTGATACCGTAACCCTCGG-TCCAGTC-CAATC
461 GCGGGTGCTCAGC-C-GGCCAGAG--GGGC--GGGAT-GCGCAAGCCAGGGATCGA-TCTGGGTC
**** * * * * * *
12788469 TTAGAT-TGGGAATGAACT-CCATATGCCTAAGTCAACCCATGAAACGAGCATGACGGGTGCTCA
518 -CCCCTCTGCG--TG--CTGCC-GAT-CCT--G-CTA-CC--GTAAC---CCT--C-GGT-C-CG
* * ** ** * * ** *
12788532 G-CCG-GC-CAGAGGGGCGGAATGCGCAAGCTGGGGATCGGCC-GAGTCCCCCTCTGCGTGTTGT
562 GTCCGATCTTAGA-CTG-GGAAT--G-AA-CTCCGTAT--GCCTAAG---CCAAC--C-----GA
** * ** *** * * * * * ** ** * *
12788593 CGATCCTACTGCCGCAACCTTCGGTCTGGTCATTTCTTATACTGGGAATGA-ACTCCGTATGC-C
609 CGAAACGA--G-CG-GGCGGGCGGGC-GGGCACTAC--GT-C-GGCCA-GAGAGACGGGATGCGC
* * * * ** **** * ** * ***
12788656 TAAGCCAAT-CAACGAAACGAGCG-GGCGGGTGGGCGGGCGGTCATTACGTCGGCCAGAGAGAC-
664 -AAGCC-GTGGATCGATA-G-G-GTGGTAGGTGGG-TTTAGG-C---ACATC-TTCATA-TTTCT
* * ** * * ** *** ** * *
12788718 AGGATGCGCAA-GCCATGGATCGATAGGGTGGTAGGTGGGT--TTTGG-CAC---A-TCTTCA--
717 ACG-TGC-CAATGCCAT--TTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
** * * * * * *
12788773 T-ATTTTTGCATGCCAATG-CCA-T--TTTTATGGCTTGTAAATT-CATACAATGGTCCTTTAAA
777 TGAAGTTT-CATGGCAA-GACAACTCGTTTTCT-ACTT-T---TTAC-TACGAT--T-TTTTAAA
** ** * * * **
12788832 ACTTCAAGTGATGTTTCATGGCAAGACGATTTGTTTTCTATTTTTCATAA-TTGTTGAAACTTTT
831 A--T----T--T-TTTC--GG-AAG--GATTT-TTGGC-----CCCA-AACTTGGT-AGACGTGA
12788896 T
874 T
* * * ** * * ** * ** * * *
12788897 GCGGTTCGGGATTTTTAAAATT--TTTTCA-GAAGGAGTTTTG-GAACCAAACTTGGTAGACTTG
1 -C-CTT--GTATTTTT---GTTGGCATGCACAAAAAAATTCAGCTAA--AAAC-TCG-A-A-GTG
* ** * ***
12788958 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
53 -TACAAG-A-TTTTG-T-G-A--C-C------ATT----TGAAAA----AAGTGT-CCCCA-TTT
** * * *** * * *
12789023 GTGAC-CATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
93 CAGACAC-TTT-----AA-TGGCTAC-TGGCAG-CA----AA---C--CT-GTA--AAA--TCTC
* * ** ** * * * * *
12789087 AAAT-CTCAAATGCTCCTTAAGGGGT-TGTAAGT-TCTCGAGGTT--TGATGAGG-GATAAGAGG
135 AAATGCTC---T--T--TAAGGGGGTGTG-AGTTCTCAAG-GTTTGATGA-G-GGATA-AGGGGC
* * * * * * *
12789146 CCA-AGATAAGGGCAAGTACCAGCACCCATTGTACATCATGTGTGCACACCTCCCCCTCCGGCCC
188 CAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----CCCC-CC-G-CC
* * * **
12789210 CCCCGATCGCCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGCACCC
245 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGACGCTC-GGCGATGGTGCCC
* * * * * * *
12789275 CGATGAAGAAAAATGCAGTACCAACACATGCCTGAGCCTAGCATGTGCTGCCGCAACCCTCGGTC
309 CGACGAAAAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTC
* * * * * *
12789340 CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAGCTCCATATGCCTA
374 CGGTCCGATCTTACACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
12789405 AGTCAACCTAC-AGAATGAGCGTACGGGTGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGAC-G
439 AGTCAACCCACGA-AACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG
* * * * * * * ** *
12789468 AGGATCG-GCCGGG-ACCCC-CT---T--T----AT-GTGCTGCCGCAAGCCTTAGTCCGGTTCG
503 -GGATCGATCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCG
*
12789520 ATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAACCGACGAAACGAGCGGGCGGGCGGACG
567 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-GG-CG
* * * * * **
12789585 GGTGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTACTTGG
628 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * ** *
12789650 GTTGAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG--CCTTCACCT-GA
693 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA--TACA
* * * * * ** * * ** **** * **
12789712 A-GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA-AA--C-TTTT-TGCGGT
756 ATGGTCCCT--TAAGCCTTCACG---T-GAAGTTTCATG--GCAAGACAACTCGTTTTCTACTTT
* * * *
12789771 TT--GA-GATTTTTTTAAATTTTTTCGAAAGGA-TTTTGGCCCCAAACTTGGTAGACATGAT
813 TTACTACGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
12789829 CCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTAGAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
12789894 GGCCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * *
12789959 TATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAA
* * * *
12790024 GGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCATACCCCCCGACCCACCCGATCGCCAGA
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-CCC-CCCGATCGTCGGA
* * ** *
12790089 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGGTGAAGAAAAAT
259 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGACGCTC-GGCGATGGTGCCCCGACGAAAAAAAAT
*** * * ** * *
12790154 ATTGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAATCTGATCTTAG
323 GCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAC
* * * *
12790219 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATAAACTCCGTATACCTAAGTCAACCCACGAA
388 ACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * *
12790284 ACAAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-GCCGGGTC
453 ACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCTGGGTC
* * * * * * * *
12790348 CCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTTGGTTCGGTCTGATCTTAGATTGGGAAT
518 CCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
*
12790413 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCA
583 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCA
* **
12790478 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTATAGGTGCATCTTCATAT
648 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * * *
12790543 TTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCGTCACGT
713 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
12790608 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGA
778 GAAGTTTCATGGCAAGACAACTCGTTTTC------T-AC--TTTTT---AC---------TAC--
* *
12790673 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
820 GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * *
12790728 CCTTGTATTTTTGTTGGCATGCAGAAAACAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
12790793 GACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * * *
12790858 TCTCAATTGCTCTTTAAGGAGGTGTGCA-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATA
131 TCTCAAATGCTCTTTAAGGGGGTGTG-AGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATA
* * * *
12790922 AGGGCCGAGTACCAGCACCCATCGCACATCATGTACGCACACCTCCCCCGGGCCCCCGATCGACG
195 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCC-GCCCCCCGATCGTCG
* * * * ** *
12790987 GAACCCCAATGTCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTAACGAAGAAAA
257 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGACGCT-CGGCGATGGTGCCCCGACGAAAAAAA
* * *** * * *
12791052 ATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGTAACCCACAGTCTGGTCCGATCTT
321 ATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTT
* * * ** *
12791117 AGATTGGGAATGAACTCTATATGCTTAGCCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
386 ACACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * * * *
12791182 AAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATTG-GCCGGG
451 AAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCTGGG
* * * * * ** * * ** * *
12791246 TCCCCCTCTACGTACTGCTGGTCCTGTTACCACAACCCTCAGTTCATTCTGATCTTAGATTGGGA
516 TCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* *
12791311 ATGAACTCCGTATGGCTAAGCCAACCGAC-AAA--A-----CGAGCGGGCGGGCAC--CGTGCGG
581 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGT-CGG
* * *
12791366 CCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGCGGTAGGTGGGTTT-GGTACATCTTCA
645 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
12791430 TATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA-ACAATGGCCCCTTAAGCCTTCA
710 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * *
12791494 CATGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGTGGTT
775 CGTGAAGTTTCATGGCAAGACAACTCGTTTTC------T-AC--TTTTT---AC---------TA
* * *
12791559 CGAGATTTTTTAAAA-TTTGTCGGAAGGAGTTTTGGCCTCAAACTTGGTAGACGTGAT
819 C--GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
12791616 CCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * * *
12791681 GACTATTTAAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGCCAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
12791746 TCTCAAATGCTCTTT-A---------AG--CTCGAGGTTTGATGAGGGAT-AGAGGGCCAATATA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAG-GGGCCAATATA
* *
12791798 AGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCCGCCCCCCCGGCCCCCCCGATC
195 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----CCCCCC-G-CCCCCCGATC
* * ** *
12791863 GTCGGAACCCCAATGCCGCCGATCAGGTTCTCTGACGATTCTCCGGCGATGGTGCCCCGACGAAG
253 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGACGCT-CGGCGATGGTGCCCCGACGAAA
** **
12791928 AAAAATGCGGCACCAACACATGCTTGAGCCCAGCATGTGCTGCCGTAA-CC-C--T-C-G---G-
317 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGA
*
12791983 ---T-C-C------AG---TCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
382 TCTTACACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * **
12792032 CACGGAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGTGGGTTGCACAAGCTGGGGATCGA-C
447 CACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATC
* * * * * * * *
12792096 CGGGTCCCCCTCTGCGTGCTACCGATCCTGTTGCCGCAACCCTCGATCCGATCTGATCTTAGACT
512 TGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACT
* * * * *
12792161 AGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAATGA--------GCGGGCGAGCACTACGT
577 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGT
* * *
12792218 CGGCAAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
642 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* ** * * *
12792283 TCATATTTCTATGTGCCAATGATATTTTTATGGCTTTTAAATTCGTACAATGGTCCCATAAGCCT
707 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
12792348 TCACGT-AATGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
772 TCACGTGAA-GTTTCATGGCAAGACAACTCGTTTTC------T-AC--TTTTT---AC----TAC
* * *
12792412 GATTCGGGATTTTTCAAAATTTTTTTGAAAGG-TGTTTTGGGCCCAAACTTGGTAGACGTGAT
820 GA-T-----TTTTT-AAAATTTTTTCGGAAGGAT-TTTTGGCCCCAAACTTGGTAGACGTGAT
* *
12792474 CCTCGTATTTTTGGTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
12792539 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCATACTTGTTAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
12792604 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAA
* * * * **
12792669 GGGCCAAGTACCAGCACCCATCGTACATCATGCGTGCACACCCCCCGGCCCCCGATCACCGGAAC
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGGAAC
** * *
12792734 CCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC-AAAGAAAAATG
261 CCCAATGCCGCCGGTCAGGTTCTCCGACGACGCT-CGGCGATGGTGCCCCGACGAAA-AAAAATG
* * * * * * * *
12792798 CGGCACCAACACATGCCCAAGCCTAGCATGTGTTACCGCAACCCTCGATCCAGTCCGATCTTAGA
324 CGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTACA
* * *
12792863 -TTGGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
389 CTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
12792927 TGTGTGTGAGGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCCGGGTC
454 CGAGCGTG-CGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCTGGGTC
* ** ** *
12792991 CCCCTCTGCGTGCTGCCAATCCTGCTACCGTAACCCTCAATCCGGTTTGATCTTAGACTGGGAAG
518 CCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* *
12793056 GAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGCGTCGGCGGGCGGGCGGGCACTACGCCG
583 GAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GCG--GGCGGGCGGGCGGGCACTACGTCG
* * *
12793121 ACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAGGCACATCTTC
644 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
12793186 AAATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTACCTTAAGCCTTC
709 ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
12793251 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGT
774 ACGTGAAGTTTCATGGCAAGACAACTCGTTTTC------T-AC--TTTTT---AC---------T
* * *
12793316 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AACTTGGTAGACATGAT
818 AC--GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
12793374 CCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
12793439 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
12793504 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAA
* * * **
12793569 GAGCCAAGTACCAGCACCCATCGCCCATCATGTACGCACA-CCCCC-CCGACC-A-C--CGGAAC
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGGAAC
* * * ** ** * * * *
12793628 CCCAATGCCGCTGGTTAGGTTCTCTGGTGATACTCCGGTGATGGTGCCCCGATGAAGAAAAATGT
261 CCCAATGCCGCCGGTCAGGTTCTCCGACGACGCT-CGGCGATGGTGCCCCGACGAAAAAAAATGC
* * * ** ** * * *
12793693 GGCACCAGCATATGCTCGAAACCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGAC
325 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTACAC
* * *
12793758 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
390 TGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * ** ** * ** *
12793823 AAGTGTGCGGGCACTCAATCGGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCGGTC-GGGTCCC
455 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCTGGGTCCC
* ** * ** ** * * *
12793887 CCTCTACGTGCTGCTAATCTTGCTACCACAACCCTCCATCCGGGCTGATCTTAGACTGGGAATCA
520 CCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * * *
12793952 ACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGCGGGCGGACGTGCGGGCACTGCGCCGGC
585 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-G--G-GCGGGCACTACGTCGGC
* * * *
12794017 TAGAGAGAGGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCAT
646 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
** *
12794082 ATTTCTGTGTGCCAACGCCATTTTTATGGCTTGTAAATTCA-ACAATGGTCCCTTAAGCCTTCAC
711 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
12794146 GTGAAGTTTCATGGCGACACGACTCATTTTCTATTTTTCATGATTTT-TGAAACTTTTTACGGTT
776 GTGAAGTTTCATGGC-A-A-GA--CA------A---CTC--G-TTTTCT---ACTTTTTAC--TA
** * * *
12794210 CGGGATTTTTTAAAATTTTTTCAAAAGGA-GTTTGGCCCCAAACCTGGTAGACATGAT
819 C--GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * *
12794267 CCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCACCTAGAAACTCGAAGTATACAAGATTTTAT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
12794331 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * *
12794396 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGACAATATAA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAA
*
12794461 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----C-CCCCTCGATCGTCGGAAC
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGGAAC
* * * * ** *
12794520 CCCAATGCCGTCAGTCAGGTTCTTC-A--A-------CGATGGTGCACCGGTGAAGAAAAATGCG
261 CCCAATGCCGCCGGTCAGGTTCTCCGACGACGCTCGGCGATGGTGCCCCGACGAAAAAAAATGCG
** * * * * * * *
12794575 GCACCGGCACATGCTCGAGCCCAGCATGTGCAGCCGCCACCCTCGATCCGGTCCGATCTTAGATT
326 GCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTACACT
* * *
12794640 GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
391 GGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * ** * *
12794705 A-CTGTGCGGGCGCTCAGTCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGT-TGGGTCCC
456 AGC-GTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCTGGGTCCC
* ** ** * * *
12794768 CCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCCATCCAGTCTGATCTTAGACTGGGAATAA
520 CCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * * * *
12794833 ACTCTGTATGCCTAAGCCAACCGACGAAAGGAGCGGGCGGGCGGCGGGTGGGCACTATGCCGGCC
585 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-GGCGGGCGGGCACTACGTCGGCC
** * *
12794898 AGAGAGGTGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
647 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * * *
12794963 TTTTTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATAGTCCCTTAAGCCTTCACG
712 TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* *
12795028 TGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCA
777 TGAAGTTTCATGGCAAGACAACTCGTTTTCTA-----C----TTTTT---AC----TA-----C-
* ** * *
12795093 GGATTTTTTAAAATTTTTTTGGAATAAGTGTTGGCCCCAAACTTGGTAGACGTGAT
820 -GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
*
12795149 CCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
12795214 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACGTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
12795279 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAA
* * * *
12795344 GGGCCAAGTACCAGTACGCATCGTACATCATGTGCACACAGCCCCCTCGGCCCCCCCGATCGTCG
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-C-G-CCCCCCGATCGTCG
* * *
12795409 GAACCCCAATGCCACCGGTCAGGTTCTCCGACGA---T--GC-----T--CCAG-CGAAGAAAAA
257 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGACGCTCGGCGATGGTGCCCCGACGAAAAAAAA
* * * ** * * *
12795461 TGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTTGATCCGGTCTGATCTTA
322 TGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTA
* ** * * * *
12795526 GACTACGAATGAACACCGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
387 CACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * *
12795591 AACAAGCGTGCGGGTGCTCAGTCGGCCAGA-GGGCTGGGATGTGCAAGCCGGGGATC-AGCCGGG
452 AACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC-GGGATGCGCAAGCCAGGGATCGATCTGGG
** * * * ** * * **
12795654 TCCCCCTCCACGTGCGGCTGATCCTGCAACCGTAACCCTTAGTCTGATTTGATCTTAGACTGGGA
516 TCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* *
12795719 ATGAACTTCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCGGGCGAGCGGGCACTACGT
581 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G-G-GCGGGCACTACGT
* * *
12795784 CGGCCAGAGAGGCCGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCT
642 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * * *
12795849 TCATATTTCTGCATGCAAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTACCTTAAGCCT
707 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
12795914 TCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCAGAATTTTTAAAACTTTTTGTG
772 TCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTA-----C----TTTTT---AC--------
* * **
12795979 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGAT
817 -TAC--GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
12796040 CCTTATATTTTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
12796105 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * *
12796170 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAGGAGGGATAGGGGGCAAATATAA
131 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAA
*
12796235 -GGCCAAGTACCAGCA--C--CG---ATCAT-T-TG---A--------------A------G--C
196 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGGAAC
* * * * * * *
12796265 CCCAATGCCACCGGTTAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCTACGAAGAAAAATGC
261 CCCAATGCCGCCGGTCAGGTTCTCCGACGACGCT-CGGCGATGGTGCCCCGACGAAAAAAAATGC
** ** * * ** *
12796330 GTTACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAATCCTCGGTCTGGTTTGATCTTAGAC
325 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTACAC
* * * * *
12796395 CGGGAATGAACTCCTTATGCTTAGACCGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
390 TGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * ** * *
12796460 AAGCGTGCGGGTACTCAGTCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCT-GATCCT
455 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCTGGGTCCC
* * * * * *
12796524 CCTCTGTGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCGGTCCCATCTTAGACTGGGAATGA
520 CCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * * * * * * * *
12796589 ACTCTGTATGCCTACGCCGACAGACGAAATGAGCGGGCAGGCAGGTGGGTGGGCACTATG-CTAG
585 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G--GGCGGGCGGGCACTACGTC-GG
*
12796653 CCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
645 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
12796718 TATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCA
710 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
12796783 CGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
775 CGTGAAGTTTCATGGCAAGACAACTCGTTTTC------T-AC--TTTTT---AC----TA-----
* ** * *
12796848 CGGGATTTTTTAAAATTTTTTTGGAATAAGTGTTGGCCCCAAACTTGGTAGACGTGAT
819 C--GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
12796906 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
12796971 GACCATTTGAAAAAAGAGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
12797036 TC
131 TC
12797038 GAGGGTTGTG
Statistics
Matches: 9406, Mismatches: 1630, Indels: 1567
0.75 0.13 0.12
Matches are distributed among these distances:
850 2 0.00
851 1 0.00
852 32 0.00
854 183 0.02
855 56 0.01
856 58 0.01
857 72 0.01
858 169 0.02
859 2 0.00
860 1 0.00
861 2 0.00
862 3 0.00
863 104 0.01
864 11 0.00
865 253 0.03
866 612 0.07
867 15 0.00
868 7 0.00
869 9 0.00
870 127 0.01
871 20 0.00
872 275 0.03
873 127 0.01
874 495 0.05
875 10 0.00
876 79 0.01
877 80 0.01
878 8 0.00
879 12 0.00
880 223 0.02
881 351 0.04
882 50 0.01
883 206 0.02
884 9 0.00
886 7 0.00
887 10 0.00
888 226 0.02
889 239 0.03
890 341 0.04
891 478 0.05
892 254 0.03
893 148 0.02
894 358 0.04
895 70 0.01
896 10 0.00
897 254 0.03
898 255 0.03
899 259 0.03
900 833 0.09
901 214 0.02
902 11 0.00
903 6 0.00
904 9 0.00
905 227 0.02
906 339 0.04
907 5 0.00
908 5 0.00
909 5 0.00
910 4 0.00
911 2 0.00
912 1 0.00
914 16 0.00
915 24 0.00
916 3 0.00
917 5 0.00
918 1 0.00
919 3 0.00
920 6 0.00
921 2 0.00
922 4 0.00
923 2 0.00
924 4 0.00
925 6 0.00
926 5 0.00
927 8 0.00
928 17 0.00
929 4 0.00
930 4 0.00
931 6 0.00
932 15 0.00
933 8 0.00
934 22 0.00
935 11 0.00
936 13 0.00
937 36 0.00
938 18 0.00
939 15 0.00
940 29 0.00
941 36 0.00
942 27 0.00
943 11 0.00
944 20 0.00
945 25 0.00
946 11 0.00
947 19 0.00
948 28 0.00
949 18 0.00
950 19 0.00
951 18 0.00
952 28 0.00
953 30 0.00
954 21 0.00
955 16 0.00
956 14 0.00
957 6 0.00
958 9 0.00
959 9 0.00
960 21 0.00
961 31 0.00
962 19 0.00
963 18 0.00
964 40 0.00
965 19 0.00
966 27 0.00
967 10 0.00
968 20 0.00
969 18 0.00
970 6 0.00
971 5 0.00
973 6 0.00
974 5 0.00
975 2 0.00
976 6 0.00
977 2 0.00
978 11 0.00
979 10 0.00
980 15 0.00
981 9 0.00
982 3 0.00
983 2 0.00
984 9 0.00
985 7 0.00
986 7 0.00
987 8 0.00
988 11 0.00
989 2 0.00
991 3 0.00
993 2 0.00
994 1 0.00
995 2 0.00
996 1 0.00
997 2 0.00
999 5 0.00
1000 2 0.00
1001 4 0.00
1002 10 0.00
1003 14 0.00
1004 1 0.00
1005 11 0.00
1006 1 0.00
1007 8 0.00
1008 11 0.00
1009 1 0.00
1010 2 0.00
1011 10 0.00
1012 16 0.00
1013 8 0.00
1014 9 0.00
1015 13 0.00
1016 6 0.00
1017 3 0.00
1018 4 0.00
1019 14 0.00
1020 4 0.00
1021 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (874 bp):
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGTCGGAAC
CCCAATGCCGCCGGTCAGGTTCTCCGACGACGCTCGGCGATGGTGCCCCGACGAAAAAAAATGCG
GCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTACACT
GGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCTGGGTCCCC
CTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAG
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACAACTCGTTTTCTACTTTTTACTACGATTTTTTAAAATTTTTTCGGAAGGA
TTTTTGGCCCCAAACTTGGTAGACGTGAT
Found at i:12787422 original size:26 final size:26
Alignment explanation
Indices: 12787393--12787445 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12787383 CCGGTCTGAT
*
12787393 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12787419 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12787445 C
1 C
12787446 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12787607 original size:26 final size:26
Alignment explanation
Indices: 12787578--12787630 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12787568 TTGGTCCGAT
*
12787578 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12787604 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12787630 C
1 C
12787631 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12789378 original size:26 final size:26
Alignment explanation
Indices: 12789349--12789401 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12789339 CCAGTCCGAT
* *
12789349 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
12789375 CTTAGACTAGGAATGAGCTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
12789401 C
1 C
12789402 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12790250 original size:26 final size:26
Alignment explanation
Indices: 12790214--12790264 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12790204 CCAATCTGAT
* *
12790214 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
12790240 CTTAGACTGGGAATAAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
12790265 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:12794668 original size:26 final size:26
Alignment explanation
Indices: 12794632--12794684 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12794622 CCGGTCCGAT
* *
12794632 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12794658 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12794684 C
1 C
12794685 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12795561 original size:26 final size:26
Alignment explanation
Indices: 12795523--12795573 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12795513 CGGTCTGATC
12795523 TTAGACTACGAATGAACACCGTATGG
1 TTAGACTACGAATGAACACCGTATGG
** *
12795549 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTACGAATGAACACCGTATG
12795574 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACTACGAATGAACACCGTATGG
Found at i:12796051 original size:891 final size:891
Alignment explanation
Indices: 12787570--12797037 Score: 11149
Period size: 866 Copynumber: 10.7 Consensus size: 891
12787560 CCCTTGGTTT
* * *
12787570 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCAAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
12787635 GTCAACCCATGAAACGAGCGTACGGGTGCTCA-ACTGGCCAGAGGGGCGGGATGCG-AAGTCGAG
66 GTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * *
12787698 GATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGTAACCCTCAGTCTGGTCTGATC
130 GATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATC
** *
12787763 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAACGGG-TGG-GA--
195 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGAGC
* ** *
12787820 GGGCACTACGCCGGCCATAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
260 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*** *
12787885 TAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGT
325 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
12787950 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTCGTTTTCTATTTTTCACGA-TTTTCA
390 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
12788014 AACCTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTAGCCCCAAACTTGGTA
455 AA-CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
12788079 GACATGATCCCTGTATGTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
519 GACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
12788143 AGATTTTGTGACCATTTGAAAAAA-TGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
583 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
** * *
12788206 CCTGTAAAATCTCAAATGCTCTACAAGGGGGTGTGAGTTCTTGAGGTTCGATGAGGGATAGGGGG
648 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
12788271 CCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATATGCGCACACCCCCC-GCCCCCCGA
713 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* * * * * ** *
12788335 TCATCGAAACCGCAATGCCGTCGGTCAGGTTCTCGGGTGATGCTCCGGTGACGGTGCCCCGACGA
778 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-----C-GAG---C--CGA
* * *
12788400 AGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGATACCGTAA-CC-C--T-C
832 AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCC
* * *
12788455 -G---G-TC-----C-----A-G---TCC-AAT-CTTAGATTGGGAATGAACTCCATATGCCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
12788499 GTCAACCCATGAAACGAGCATGACGGGTGCTCAGCCGGCCAGAGGGGCGGAATGCGCAAGCTGGG
66 GTCAACCCACGAAACAAGCGTG-CGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * * * * * *
12788564 GATCGGCCGAGTCCCCCTCTGCGTGTTGTCGATCCTACTGCCGCAACCTTCGGTCTGGTCAT-TT
130 GATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGATC-TGAT
* * * * * *
12788628 CTTATACTGGGAATGAACTCCGTATGCCTAAGCCAATCAACGAAACGAGCGGGCGGGTGGGCGGG
194 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGAG
* * * * * *
12788693 CGGTCATTACGTCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
259 CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
12788758 TTTGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
324 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* ** * * * * ** *
12788823 TCCTTTAAAACTTCAAGTGATGTTTCATGGCAAGACGATTTGTTTTCTATTTTTCATAATTGTTG
389 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* **
12788888 AAACTTTTTGCGGTTCGGGA-TTTTTAAAATTTTTTCAGAAGGAGTTTTGGAACCAAACTTGGTA
454 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
12788952 GACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
519 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
12789017 GATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
584 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
12789082 CTGTAAAATCTCAAATGCTCCTTAAGGGGTTGTAAGTTCTCGAGGTTTGATGAGGGATAAGAGGC
649 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
12789147 CAAGATAAGGG-CAAGTACCAGCACCCATTGTACATCATGTGTGCACACCTCCCCCTCCGGCCCC
714 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----CCCC-CCGG-CCC
* * *
12789211 CCCGATCGCCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGCACCCC
773 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC--CCGA--G----CC
* * * * * *
12789276 GATGAAGAAAAATGCAGTACCAACACATGCCTGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCC
830 ---GAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCC
* * * * *
12789341 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAGCTCCATATGCCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* ** * * * *
12789406 GTCAACCTAC-AGAATGAGCGTACGGGTGCTCAG-CAGGCCAGAGGGGCGGGATGCGCAAGACGA
66 GTCAACCCACGA-AACAAGCGTGCGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * *
12789469 GGATCGGCCGGGACCCCCTTTA--TG-T---G---CTG---CCGCAAGCCTTAGTCCGGT-TCGA
129 GGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGATCT-GA
* * * *
12789521 TCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGG
193 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGA
* * * * * **
12789586 GTGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTACTTGGG
258 GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
12789651 TTGAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG------C---C--T-
323 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
12789704 -T--C---A-----C-C-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
388 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
12789756 GAAACTTTTTGCGGTTTGAGATTTTTTTAAATTTTTTCGAAAGGA-TTTTGGCCCCAAACTTGGT
453 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
12789820 AGACATGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTAGA
518 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
12789885 AGATTTTGTGGCCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAA
583 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
12789950 CCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGG
648 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
12790015 CCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCATACCCCCCGACCCACCCG
713 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCG
* * *
12790080 ATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGGTG
777 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC--CCGA----G--CC---G
*** *
12790145 AAGAAAAATATTGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-AGTCC
831 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGA-TCC
** * * *
12790206 AATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATAAACTCCGTATACCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
*
12790271 GTCAACCCACGAAACAAGCGTGCGGGTGCTCAG-CTGGCCAGAGGGGCGGGATGCGCAAGCCGGG
66 GTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * ** * *
12790335 GATCGGCCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCCTTGGTTCGGTCTGATC
130 GATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATC
* *
12790400 TTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G-G-GC
195 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGAGC
* *
12790461 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTA
260 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** * *
12790526 TAGGTGCATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATCCATACAATGGT
325 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
12790591 CCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
390 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
12790656 AACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
455 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
12790721 ACGTGATCCTTGTATTTTTGTTGGCATGCAGAAAACAATTCAACTAAAAACTCAAAGTGTACAAG
520 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
12790786 ATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACC
585 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
12790851 TGTAAAATCTCAATTGCTCTTTAAGGAGGTGTGCA-TTCTCGAGGTTTGATGAGGGATAGGGGGC
650 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG-AGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
12790915 CAACATAAGGGCCGAGTACCAGCACCCATCGCACATCATGTACGCACACCTCCCCCGGGCCCCCG
714 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCGGCCCCCCG
* * *
12790980 ATCGACGGAACCCCAATGTCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTAACG
777 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC--CGA----G--C---CG
* * * * *
12791045 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGTAACCCAC-AGTCT
831 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGA-TCC
* * ** *
12791106 GGTCCGATCTTAGATTGGGAATGAACTCTATATGCTTAGCCTGGGAATGAACTCCGTATGCCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
12791171 GTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGG
66 GTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * *
12791236 ATTGGCCGGGTCCCCCTCTACGTACTGCTGGTCCTGTTACCACAACCCTCAGTTC-ATTCTGATC
131 ATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGA-TCTGATC
* * *
12791300 TTAGATTGGGAATGAACTCCGTATGGCTAAGCCAACCGAC-AAA--A-CGAGCGGGCGGGC-A-C
195 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGAGC
* * * *
12791359 ---C-GT--G-CGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGCGGTAGGTGGGTT
260 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
12791417 T-GGTACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA-ACAATGGC
325 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
12791480 CCCTTAAGCCTTCACATGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACAATTTTTGA
390 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
12791545 AACTTTTTGTGGTTCGAGATTTTTTAAAA-TTTGTCGGAAGGAGTTTTGGCCTCAAACTTGGTAG
455 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
12791609 ACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAG
520 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * * *
12791674 ATTTTGTGACTATTTAAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGCCAGCAAACC
585 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
12791739 TGTAAAATCTCAAATGCTCTTT-A---------AG--CTCGAGGTTTGATGAGGGATAGAGGGCC
650 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
12791792 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCCGCCCCCCCGGCCCCC
715 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----CCCCCCGG-CCCC
* * *
12791857 CCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCTGACGATTCTCCGGCGATGGTGCCCCG
774 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC--CGA----G---C-
**
12791922 ACGAAGAAAAATGCGGCACCAACACATGCTTGAGCCCAGCATGTGCTGCCGTAA-CC-C--T-C
829 -CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCC
12791981 GGTC----C----A----G--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
12792025 GTCAACCCACGGAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGTGGGTTGCACAAGCTGGGG
66 GTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * *
12792090 ATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGTTGCCGCAACCCTC-GATCCGATCTGATC
131 ATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAG-TCCGATCTGATC
* * *
12792154 TTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAATGA--------GCGGGCGA--
195 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGAGC
* * * * *
12792209 --GCACTACGTCGGCAAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTT
260 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*** ** * *
12792272 TAGGCACATCTTCATATTTCTATGTGCCAATGATATTTTTATGGCTTTTAAATTCGTACAATGGT
325 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
12792337 CCCATAAGCCTTCACGT-AATGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
390 CCCTTAAGCCTTCACGTGAA-GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * * *
12792401 AAACTTTTTACGATTCGGGATTTTTCAAAATTTTTTTGAAAGGTGTTTTGGGCCCAAACTTGGTA
454 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
12792466 GACGTGATCCTCGTATTTTTGGTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
519 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
12792531 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCATAC
584 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
12792596 TTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
649 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
12792661 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGCGTGCACACCCCCCGG-CCCCCGAT
714 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
** **
12792725 CACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACAAA
779 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC--CGA----G--CCG---AA
* * * * *
12792790 GAAAAATGCGGCACCAACACATGCCCAAGCCTAGCATGTGTTACCGCAACCCTCGATCC
833 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCC
* * * *
12792849 AGTCCGATCTTAGA-TTGGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTCCGTATGCCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
*** * * *
12792913 GTCAACCCACGAAATGTGTGTGAGGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
66 GTCAACCCACGAAACAAGCGTG-CGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * *
12792978 GATCGTCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGTAACCCTCAATCCGGTTTGATC
130 GATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATC
* * *
12793043 TTAGACTGGGAAGGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGCGTC-GGCGGGCGGG
195 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCG-GGCGGGCGGGCGAG
*
12793107 CGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
259 CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
12793172 TCAGGCACATCTTCAAATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAG
324 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
12793237 TACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
389 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
12793302 AAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AACTTGGTA
454 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
12793366 GACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAA
519 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
12793431 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAAC
584 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
12793496 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
649 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * **
12793561 CAATATAAGAGCCAAGTACCAGCACCCATCGCCCATCATGTACGCACA-CCCCC--CCGACC-A-
714 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
* * * ** * *
12793621 C--CGGAACCCCAATGCCGCTGGTTAGGTTCTCTGGTGATACTCCGGTGATGGTGCCCCGATGAA
779 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC--CGA----G--CC---GAA
* * * * ** * *
12793684 GAAAAATGTGGCACCAGCATATGCTCGAAACCAGCATGTGCTGCCGTAACCCTCGGTCT
833 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCC
* *
12793743 GGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
12793808 GTCAACCCACGAAACAAGTGTGCGGGCACTCAATCGGCCAGAGGGGTGGGATGCGCAAGCTGGGG
66 GTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* ** * * **
12793873 ATCGGTCGGGTCCCCCTCTACGTGCTGCTAATCTTGCTACCACAACCCTCCA-TCCGGGCTGATC
131 ATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCT-CAGTCCGATCTGATC
* * * *
12793937 TTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGCGGGCGGACGTGC
195 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGAGC
* * *
12794002 GGGCACTGCGCCGGCTAGAGAGAG-GGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
260 GGGCACTACGCCGGCCAGAGAG-GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** *
12794066 TTAGGAACATCTTCATATTTCTGTGTGCCAACGCCATTTTTATGGCTTGTAAATTCA-ACAATGG
324 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
12794130 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCGACACGACTCATTTTCTATTTTTCATGATTTTTG
389 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** *
12794195 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAG-TTTGGCCCCAAACCTGGTA
454 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
12794259 GACATGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCACCTAGAAACTCGAAGTATACAA
519 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
12794323 GATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
584 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
12794388 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGA
649 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
12794453 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----C--CCCCTCGAT
714 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
* * * * * *
12794511 CGTCGGAACCCCAATGCCGTCAGTCAGGTTCTTCAACGATGGTGCACCG-G-TGAAGAAAAATGC
779 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-C-CCGAGCCGAAGAAAAATGC
** * * **
12794574 GGCACCGGCACATGCTCGAGCCCAGCATGTGCAGCCGCCACCCTCGATCC
842 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCC
* * *
12794624 GGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * **
12794689 GTCAACCCACAAAACGA-CTGTGCGGGCGCTCAGTCGGCCAGAGGGGCAAGATGCGCAAGCCGGG
66 GTCAACCCACGAAACAAGC-GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
** *
12794753 GATCGGTTGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCCA-TCC-AGTCTGA
130 GATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCT-CAGTCCGA-TCTGA
* * * *
12794816 TCTTAGACTGGGAATAAACTCTGTATGCCTAAGCCAACCGACGAAAGGAGCGGGCGGGC-GGCGG
193 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGA
* * * * *
12794880 GTGGGCACTATGCCGGCCAGAGAGGTGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGG
258 GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
12794945 TTTAGGCACATCTTCATATTTTTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATA
323 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
12795010 GTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
388 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * ** *
12795075 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAATAAGTGTTGGCCCCAAACTTGGT
453 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
12795140 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCGAAGTGTACA
518 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
12795205 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAA
583 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
12795270 CGTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
648 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
12795335 CCAATATAAGGGCCAAGTACCAGTACGCATCGTACATCATGTGCACACAGCCCCCTCGGCCCCCC
713 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGG-CCCCC
*
12795400 CGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCT-CC-AG-CGAAGAAAAAT
775 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCCGAGCCGAAGAAAAAT
* * * *
12795462 GCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTTGATCC
840 GCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCC
** * *
12795514 GGTCTGATCTTAGACTACGAATGAACACCGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
12795579 GTCAACCCATGAAACAAGCGTGCGGGTGCTCAGTCGGCCAGA-GGGCTGGGATGTGCAAGCCGGG
66 GTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGC-GGGATGCGCAAGCCGGG
* * * * * * * * *
12795643 GATCAGCCGGGTCCCCCTCCACGTGCGGCTGATCCTGCAACCGTAACCCTTAGTCTGATTTGATC
130 GATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATC
* * *
12795708 TTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCGGGCGAGC
195 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGAGC
* * *
12795773 GGGCACTACGTCGGCCAGAGAGGCCGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTT
260 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
12795838 TAGGCACATCTTCATATTTCTGCATGCAAATGCCATTTTTATGGCCTGTAAATTCATACAATGGT
325 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
12795903 ACCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCA-GAATTTTTA
390 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG-ATTTTTG
* * *
12795967 AAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCCAAACTTGGTA
454 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
12796032 GACGTGATCCTTATATTTTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCGAAGTGTACAA
519 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
12796097 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
584 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
12796162 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAGGAGGGATAGGGGGC
649 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *** * *
12796227 AAATATAA-GGCCAAGTACCAGCA--C--CG---ATCAT-T-TG-A-AGCCCCAATG-CCACCGG
714 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGA
* ** * * * * *
12796279 T--TAGG---TTC--T-CTGAC-G--A--TGCTCCGACGATGGTGCCCCTA--CGAAGAAAAATG
778 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT--CCCGAGCCGAAGAAAAATG
** * * *
12796329 CGTTACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAATCCTCGGTCT
841 CGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCC
* * * * *
12796380 GGTTTGATCTTAGACCGGGAATGAACTCCTTATGCTTAGACCGAGAATGAACTCCGTATGCCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
** * *
12796445 GTCAACCCACGAAACAAGCGTGCGGGTACTCAGTCGACCAGAGGGGCGGGATGCGCAAGTCGGGG
66 GTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * ** * * * * * **
12796510 ATCGGCCTGATCCTCCTCTGTGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCGGTCCCATCT
131 ATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATCT
* * * * * * * * *
12796575 TAGACTGGGAATGAACTCTGTATGCCTACGCCGACAGACGAAATGAGCGGGCAGGCAGGTGGGTG
196 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGAGCG
* ** * *
12796640 GGCACTATGCTAGCCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTT
261 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
12796705 AGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTC
326 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
12796770 CCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
391 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * ** *
12796835 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAATAAGTGTTGGCCCCAAACTTGGTAGA
456 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
12796900 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
521 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
12796965 TTTTGTGACCATTTGAAAAAAGAGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCT
586 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
12797030 GTAAAATC
651 GTAAAATC
12797038 GAGGGTTGTG
Statistics
Matches: 7475, Mismatches: 866, Indels: 503
0.85 0.10 0.06
Matches are distributed among these distances:
850 6 0.00
851 2 0.00
852 1 0.00
853 1 0.00
854 172 0.02
855 56 0.01
856 47 0.01
857 89 0.01
858 171 0.02
859 1 0.00
860 2 0.00
861 1 0.00
862 3 0.00
863 113 0.02
864 52 0.01
865 288 0.04
866 734 0.10
867 15 0.00
868 9 0.00
869 272 0.04
870 130 0.02
871 6 0.00
872 6 0.00
873 222 0.03
874 224 0.03
875 112 0.01
876 78 0.01
877 77 0.01
878 9 0.00
879 21 0.00
880 226 0.03
881 477 0.06
882 52 0.01
883 204 0.03
884 4 0.00
885 2 0.00
886 5 0.00
887 4 0.00
888 226 0.03
889 236 0.03
890 334 0.04
891 489 0.07
892 240 0.03
893 193 0.03
894 540 0.07
895 69 0.01
896 11 0.00
897 13 0.00
898 93 0.01
899 248 0.03
900 552 0.07
901 227 0.03
902 3 0.00
903 2 0.00
904 2 0.00
905 4 0.00
906 56 0.01
907 43 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
ATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATCT
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGAGCG
GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCCGAGCCGAAGAAAAATGCGGCA
CCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCC
Done.