Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 79 of 190
Found at i:12796427 original size:26 final size:26
Alignment explanation
Indices: 12796388--12796440 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12796378 CTGGTTTGAT
* *
12796388 CTTAGACCGGGAATGAACTCCTTATG
1 CTTAGACCGAGAATGAACTCCGTATG
12796414 CTTAGACCGAGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
12796440 C
1 C
12796441 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:12797194 original size:26 final size:26
Alignment explanation
Indices: 12797157--12797209 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12797147 GTTGACTTAG
* *
12797157 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12797183 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12797209 G
1 G
12797210 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12799334 original size:878 final size:870
Alignment explanation
Indices: 12797183--12799688 Score: 3313
Period size: 878 Copynumber: 2.8 Consensus size: 870
12797173 CCTAGTCTAA
* * *
12797183 GCATACGAAGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTA-CGACAGCACATGCTG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGG-CCAGACCGAGGG-TAGCG-GAGAACATG-TG
* ** * * * *
12797246 GGCTCGGGCATGTGTTGGTGCCATATTTTTCTTTGCCTGGGCACCATCGCTGGAGCATCGTCGGA
61 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * * * * *
12797311 GAACCTAACCAGCGGCATTGAGGTTTCGGCGATCGGGGCGACCGGGGGGTGTGCGCACATGATGT
126 GAACCTGACCGGCGGCATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
12797376 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCA
*
12797441 CAA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAA
256 -AACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
12797505 ATGGGCACTCTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTTTTTAGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* * * * * * *
12797570 TGTGCGTGCCAACAAAAATTCGACGATCACGTCTACCAGGTTTGGTGCCAAAACTCCTTCCGAAC
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
12797635 AAATTTTAAAAAATCTAGAACCGAGCAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTC
450 AAATTTTAAAAAATCTCGAACCGA--AAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
12797700 TTGCCATAAAAGTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12797765 CATTGGCACATAGAAATATGAAGATGTTCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTG
577 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
12797829 CACATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCACCCACCCACTCATTTTGTCAGTTG
642 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCACCCGCCCGCCCACTCGTTTCGTCGGTTG
* *
12797894 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGTAGGA
707 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGA
* * * * * * * *
12797959 TCGACAGCATGCAGAGGGGGACCCAGTCGATCCCCTGCTTGCGCATCCCACCCCTCTCACCCTTT
772 TCAACAGCACGCAGAGGGGGACCCAGCCAATCCCCGGCTTGCGCATCCCACCACTCTCACCCGTA
* *
12798024 GAGCGCCCGCACGCTGGTTTCGTGGTTGACTTAG
837 GAGCACCCGCACGCTCGTTTCGTGGTTGACTTAG
* * ** ** * ** *
12798058 GCATACAGAGTTCATTGCCAATCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATT-CCAGTCTAAG-AT-C--AGGCCAGACCGAGGGT-AG--CGGA-GA-AC
* * * ** * * *
12798123 -CGAGGGTTACGGTAGCACATGCTGGGGACGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCA
56 ATGTGGGCT-CGG--GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA
** * * *
12798187 TCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACTATCGGGGGGG-CGGGGGGTGTGCGCA
118 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGGTGTGCGCA
* **
12798251 CATGATGTGTGATGGGTGCTGGTACTTGGCTTTTATATTGGCTCCCTATCCCTCATCAAACCTCG
183 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCG
*
12798316 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
248 AGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
12798381 GTCTGAAATGGGGACACTTCTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
313 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
* **
12798446 ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCAA
378 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
*
12798511 TCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAGGATTCGAAAATCGTGAAAAATAGAAAACG
443 TCCGAAAAAATTTTAAAAAATCTCGAACCG-AAAA-GTTTC-AAAATCGTGAAAAATAGAAAACG
12798576 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
505 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
12798641 AAAATGGCATTGGCACCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTGTCGATCCA
570 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
*
12798706 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTACCCACCCGCCCGCCCACTCGTTTCG
635 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCACCCGCCCGCCCACTCGTTTCG
* * * *
12798771 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCAGC
700 TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGC
* * **
12798836 AGCAGGATCAACCGCACGCAGAGGGGGACCC-GACCAATCCCCGGCTTGTGCATCCTGCCACTC-
765 AGCAGGATCAACAGCACGCAGAGGGGGACCCAG-CCAATCCCCGGCTTGCGCATCCCACCACTCT
* *
12798899 CGACCGGTAGAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAG
829 C-ACCCGTAGAGCACCCGCACGCTCGTTTCGT-GGTTGACTTAG
* * *
12798943 GCGTACGGAGTTCATTCTCTGTCTAAGATCAGGCCAGACCGAGGGTCGCGGTAGAACATGTTGGG
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGGCCAGACCGAGGGTAGCGG-AGAACATG-TGGG
* ** * *
12799008 CTCGGGCATGTGCTGATGCCGCATTTTTCTTCGTCGGGGCACTGTCGCCGGAGCATCGTCGAAAA
63 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
12799073 ACCTGACCGGCGACATTGGGGTTCCGGCAATCGGGGGGGGCCGGGGGGAGTGCGCACTTGATGTG
128 ACCTGACCGGCGGCATTGGGGTTCCGGCAATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
12799138 CAATGGGTGCTGGTACTTGGCCCTTATATTAGCTCACTATCCTTCATCAAACCTCGAGAACTCAA
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCAA
* *
12799203 ACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCGGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12799268 GGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * **
12799333 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTTTGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
12799398 A-TTTAAAAACATCCCGAACCGTAAAAAGTTTCAACAATCGTGAAAAATAGAAAACGAGTCGTCT
452 ATTTTAAAAA-ATCTCGAACCG--AAAAGTTTCAA-AATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
12799462 TGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTAAAAGCCACAAAAATGGC
513 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
12799527 ATTGGCACACAGAAATATAAAGATGAGCCTAAACCCACATTCCACCCTATCGATCCACGGCTTGC
578 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
12799592 GCATCCTAG-CTCGCTGGCTGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGATTG
643 GCATCC-CGTCTCTCTGGCCGGCGTAGTGCCTGCCCACCCGCCCGCCCACTCGTTTCGTCGGTTG
12799656 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
707 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
12799689 GTCGAATCGG
Statistics
Matches: 1415, Mismatches: 185, Indels: 59
0.85 0.11 0.04
Matches are distributed among these distances:
875 23 0.02
876 78 0.06
877 20 0.01
878 518 0.37
879 17 0.01
880 2 0.00
881 14 0.01
882 10 0.01
883 409 0.29
884 292 0.21
885 32 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (870 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGGCCAGACCGAGGGTAGCGGAGAACATGTGGGCTC
GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACC
TGACCGGCGGCATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCAAACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCTGCCCACCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCAACAGCA
CGCAGAGGGGGACCCAGCCAATCCCCGGCTTGCGCATCCCACCACTCTCACCCGTAGAGCACCCG
CACGCTCGTTTCGTGGTTGACTTAG
Found at i:12801371 original size:4 final size:4
Alignment explanation
Indices: 12801362--12801387 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
12801352 GATAAAATGA
12801362 GCGG GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GC
12801388 ATTACACCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:12802235 original size:880 final size:873
Alignment explanation
Indices: 12800292--12808111 Score: 8659
Period size: 851 Copynumber: 9.0 Consensus size: 873
12800282 CATAACCTTT
* * * **
12800292 GACTGGGAATGAACTCTGTACGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGAC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAC
* * * * * * *** * * **
12800357 TAGAGGGGTGGGATGTGCAAGCCGAGGATCGGACAGGTCCCCCTCGGGGTGTTGTCGATCCTGTT
66 CAGAGGGGCGAGATGCGCAAGCCG-GGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
*** ** * ** *
12800422 GCTGTAACCCTC-GATTTGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCG
130 GCCACAACCCTCAG-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
** * * *
12800486 ACG-AA--A---------CAAGCGGGCGGGCACTACGCTGGCCAGAGAGACGAGAT-AGCAAGCC
194 ACGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
** *
12800538 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCTAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
*
12800603 TTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** * * *
12800668 TCATTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTGGGATTTGTTAAAATTTTTTAGAA
389 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGATTTTTTAAAATTTTTCAGAA
*
12800733 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATT
454 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
12800798 CAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
519 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
12800863 CTTTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
584 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * * * *
12800928 GAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGCACCAGCAACCATTGCGCATCATGT
649 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* ** * * * *
12800993 GTGCACACCCCCTCCCCACAGCCCCCCGATCGCCGGAACCCCTATGCCATCGGTTAGGTTCTCCG
714 GCGCACA-CCCCT--CGGC--CCCCCCGATCGTCGGAACCCCAATGCCAGCGGTCAGGTTCTCCG
* ** * ** *
12801058 ACGATGATCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGTACATGCCTGAGCCCAGC
774 ACGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
* ** * * *
12801123 ATGTGCTGCAGTAACCTTTGGTTTGGTCCGATCTTA
839 ATGTGCTGC-GTAACCCTCAGTCTGGTCTGAACTTA
* * * * *
12801159 GACTGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGAC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAC
* * * *
12801224 CAGAGGGGTGAGATGCGTAAGCCTGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTACT
66 CAGAGGGGCGAGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
* ** * * *
12801289 ACCGTAACCCTCAGTCTGGTCTAATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
130 GCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
** * *
12801354 TAAAATGAGCGGGCGGGCGGGCGGGCGGGCGGGCATTACACCGGCCAGAGAGACGGGATGCGCAA
195 CGAAATGA----GCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
12801419 GCCATGGATCGATAGGGTGGTAGGTGGCTTTAGGCCCATCTCCATATTTCTACGTGCCAATGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
* *
12801484 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCATCACGTGAAGTTTCATGGCAAGAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
12801549 AACTCGTTTTCTA-TTTTCACAATTTTCT-AAACTTTTTACGGTTCTGGATTTTTCAAAAGTTTT
386 GACTCGTTTTCTATTTTTCACGATTTT-TGAAACTTTTTGCGGTT-TGGATTTTTTAAAA-TTTT
*
12801612 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTGTTTTTTGGCATGCACAA
448 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAA
* * *
12801677 AAAAATGCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATT
512 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
12801742 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
577 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
12801807 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCTCCCATCGCAT
642 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** ** * * * *
12801872 ATCATGTGCGCACACCCCTCAG-CCCCCCGATCACCAAAATCACAATGTCAGCGGTCAAGTTCTC
707 ATCATGTGCGCACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCAGCGGTCAGGTTCTC
** * * *
12801936 CGACGATGCTTTGGTGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCTA
772 CGACGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
*
12802001 GCATGTGCTGTCATAACCCTCAGTCTGGTCTGAACTTA
837 GCATGTGCTG-CGTAACCCTCAGTCTGGTCTGAACTTA
* * *
12802039 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAC
* * * *
12802104 CAGAAGGGCGAGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTACATGCTACCGATCCTGCT
66 CAGAGGGGCGAGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
* ** ** *
12802169 ACTGCAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAACCGA
130 GCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * *
12802234 -TAAA--A-----CGAGCAGGCGGGCGGGCATTACGCCGACCAGAGAAACGGGATGCGCAAGCCG
195 CGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* ** *
12802291 TGGATCGATAAGGTGGTAGGTATGTTTCGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
* *
12802356 TATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGATGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
12802421 CGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGTGATTTTTTAAAATATTTTCGGA
390 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTG-GATTTTTTAAAAT-TTTTCAGA
* * * * *
12802486 ATGAGTTTTGTCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCACGGACAAAAAAAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
12802551 TCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
12802616 ACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAAAAGCTCTTTAAGAGGGTGTGAGTTC
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTC
* *
12802681 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGGACCAGCACCCACCGCACATCAT
647 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * ** * * *
12802746 GTCCGCAGACCCCACCCCGCCCCCCCGACCACCGGAACCCTAATGCC-GTCGATCAGGTTTTCCG
712 GTGCGCACA-CCC-CTCGGCCCCCCCGATCGTCGGAACCCCAATGCCAG-CGGTCAGGTTCTCCG
* * ** * *
12802810 ACAATGCTCCGACGATGGTGCGCTTG-CGAAA-AAAAATGCGGCACCAGCACATGCCCGAGCCTA
774 ACGATGCTCCGGCGATGGTGC-CCCGAC-AAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
*
12802873 GCATGTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTA
837 GCATGTGCTGC-GTAACCCTCAGTCT-G---G----T---C------TG-A------A--CTTA
* * * *
12802937 GACTGGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAACCGAC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAC
* * * * * * * *** *
12803002 CATAGGGGCGGGATGCACAAGCCGAGGATCGGCCGGGTCCCCCTCTGCATGTTGTTTATCCTATT
66 CAGAGGGGCGAGATGCGCAAGCCG-GGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
* * *
12803067 GCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
130 GCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *** * * *
12803132 TGAAATGAGTGGGCAGGCAGGCGGGCGGGTTTTACGTCGGCCAGAGAGACGAGATGCACAAGCCG
195 CGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
12803197 TAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTACCAATGCCATTTG
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
* * * *
12803262 TACGGCTGGTAAATTCGTACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * * **
12803327 CGTTTTCAATTTTTCTGGATTTTTGAAACTTTTTACGGTTTGGGATTTTCTAAAATATTTTTGGA
390 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT-GGATTTTTTAAAAT-TTTTCAGA
* *
12803392 AGGAGTTTCGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
12803457 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTAGGAAAAAGTGTCCCCATTTCAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
12803522 ACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
12803587 CAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATG
648 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** **
12803652 TGCGCACACCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCA-CAGGTCAGGTTATTTGGT
713 TGCGCACACCCCT-CGGCCCCCCCGATCGTCGGAACCCCAATGCCAGC-GGTCAGGTTCTCCGAC
* * * * * * *
12803716 GATGCTTCAGCGATGGTGCCCCAACGAAGAAAAATGCAGCACCAACACATGCTCGA-CCCGATCA
776 GATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCC-AGCA
* * * * *
12803780 TGTGCTGC-CAACCCTCGGTCCGGTCCGATCTTA
840 TGTGCTGCGTAACCCTCAGTCTGGTCTGAACTTA
* * *
12803813 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTTAGCCGAC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAC
* * ** * * *
12803878 CAGAGGGGCGAGATGCGCGAGCTGGGGATCGGTCGGGT-CCCCTCTGTGTGCTGTCGATCATGCT
66 CAGAGGGGCGAGATGCGCAAGC-CGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
* *
12803942 GCCACAACCCTCAGTCCAGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
130 GCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
12804007 CGAAACGAGCGGGTGGGAGGGCGGGCGAGCACTACGCCGGCC-G-GAGA---GA--CG---G--G
195 CGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
**
12804060 T-G---G-TA----GGTA----GGTTTAGGCACATCTTCATATTT-T-TGAATGCCAACACCATT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG--TGCCAATGCCATT
*
12804110 TTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
12804175 CTCCTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTAAGATTTTTTAAAATTTTTTC-
388 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT-GGATTTTTTAAAA-TTTTTCA
* * *
12804239 GAAAGGGGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTGTT-TTGGCATGCACAAAAA
451 G-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
12804303 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTAGGAAAAAGTGTCCCCATTTCA
515 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
** *
12804368 GACACTTTAATGGCTACAAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
580 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
12804433 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATC
645 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* **
12804498 ATGTGCGCACACCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCA-CAGGTCAGGTTATTT
710 ATGTGCGCACACCCCT-CGGCCCCCCCGATCGTCGGAACCCCAATGCCAGC-GGTCAGGTTCTCC
** * * * * * *
12804562 GGTGATGCTTCAGCGATGGTGCCCCAACGAAGAAAAATGCAGCACCAACACATGCTCGA-CCCGA
773 GACGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCC-A
* * * * *
12804626 TCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTA
837 GCATGTGCTG-CGTAACCCTCAGTCTGGTCTGAACTTA
* * *
12804664 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTTAGCCGAC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAC
* * ** * * *
12804729 CAGAGGGGCGAGATGCGCGAGCTGGGGATCGGTCGGGT-CCCCTCTGTGTGCTGTCGATCATGCT
66 CAGAGGGGCGAGATGCGCAAGC-CGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
* *
12804793 GCCACAACCCTCAGTCCAGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
130 GCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
12804858 CGAAACGAGCGGGTGGGAGGGCGGGCGAGCACTACGCCGGCC-G-GAGA---GA--CG---G--G
195 CGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
***
12804911 T-G---G-TA----GGTA----GGTTTAGGCACATCTTCATATTT-T-TGAATGCCAGCACCATT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG--TGCCAATGCCATT
12804961 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * **
12805026 CTCTTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTAAGATTTTTTAAAATTTTTTTG
388 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTT-GGATTTTTTAAAATTTTTCAG
* * *
12805091 AAAGGGGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTGTT-TTGGCATGCACAAAAAA
452 -AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
12805155 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCA
516 ATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
12805219 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATTTCAAATGCTCTTTAAAGGGGTGTGAGT
580 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
12805284 TCTCGAGG-TTGATGA-GGATA-GGGGCC-ATATAAAGGGCCAAGTACCAGCATCCAT-TCACAT
645 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
12805344 CATGTGCACACACCCCCACCCTAGCCCCCCCGATCGTCGGAACCCCAATG-CAGCCGATCAGGTT
709 CATGTGCGCACA--CCC-CTC-GGCCCCCCCGATCGTCGGAACCCCAATGCCAG-CGGTCAGGTT
* * * * *
12805408 CTTCGATGATGCTCCGGCGATGGTGCCTCGACAAAGAAAAATGCAGCACCAACACATGCCTGAGC
769 CTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGC
* *
12805473 CCAGCATGTGCTGCCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGTT
834 CCAGCATGTGCTG-CGTAACCCTC-A----GTCTG------G--T----CTGAA---C------T
12805538 TA
872 TA
* * * *
12805540 GACTGGGAATGAACTCCGTATGCCTAACTCAACCTACGAAACGAGCGTGCGGGTGCTTAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAC
* * ** * * *
12805605 CAGAGGGG-GGGATGCACAAGCCGAGGATTAGCCGGGTCGCCCTCTACGTGCTGCTGATCCTACT
66 CAGAGGGGCGAGATGCGCAAGCCG-GGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
* * * * * * * * *
12805669 GCCATAACCCTCGGTCTGATCCGATCTTAG-GTGGGGAATGAACTCTGAATGCCTAAGCCAACCA
130 GCCACAACCCTCAGTCCGGTCCAATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
12805733 ACGAAATGA--------GC-GGCGGGCAGGCACTACGCCGACCAGAGAGACGTGATGTGCAAGCC
194 ACGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
12805789 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCAATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
*
12805854 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** * **
12805919 TCATTTTCTATTTTTCACGACTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAGTTTTTTTGG
389 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-TGGATTTTTTAAA-ATTTTTCAG
*
12805984 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAACAA
452 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
12806048 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGA
517 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
12806113 CACTTTATTGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
582 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
12806178 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCAT
647 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
12806242 GTGCGCACACCCC-CTGGCCCCTCCGATCGTC-GAACCCCAAAGCC-GTCGATCAGGTTCT-C--
712 GTGCGCACACCCCTC-GGCCCCCCCGATCGTCGGAACCCCAATGCCAG-CGGTCAGGTTCTCCGA
** * *
12806301 C-A-------GCGATGGTGCCCCGGTAAAGAAAAATGTGACACCAACACATGCCCGAGCCCAGCA
775 CGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
* *
12806358 GGTGCTGTCGTAACCCTCGATCCAATTCGATCTTATACTGGGAATGAACTCCATATGCTTA
840 TGTGCTG-CGTAA-CC-C--T-C-A---G------T-CT-GG--T---CT-GA-A--CTTA
* * * * *
12806419 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAACGTACGGGTTCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAC
* * * *
12806484 CAGAGGGGTGGGATGCGCAAGCCTAGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTACT
66 CAGAGGGGCGAGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACT
** * * * * *
12806549 GCTGCAACCCTC-GATCTGGACTGAA-CTTAGACTGGGAATAAACTACGTATGCCTAAGCCAACC
130 GCCACAACCCTCAG-TCCGGTC-CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
12806612 GACAAAATGA----GCGGGCGGGTGGGCGGG-----CGCCGGCTAGAGAGACGGGATGCGCAAGC
193 GACGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
12806668 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
*
12806733 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTT--C----A----CAT-G-AAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** * *
12806786 CTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCCGTTCGGGATTTTTTAAAATTTTTTC-
388 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-TGGATTTTTTAAAA-TTTTTCA
* * *
12806850 GAAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTACTTTTGTTGGCATGCACAAAAA
451 G-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
12806915 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTTC
515 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTC
12806980 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
579 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
12807045 TTCTCAAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
644 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** *
12807110 CATGTGCGCACACCCC-CGGCCCCCACGATCGTTGGAACCCCAATGCCTTCGGTCAGGTTTTCCG
709 CATGTGCGCACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCAGCGGTCAGGTTCTCCG
* * * * *
12807174 ACGATGCTCCGGCGATGGTGCCCTGGC-AAGAAAAATGCGGCACCAACACATGCTCAAGCCCATC
774 ACGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
* * * * * * *
12807238 ATTTGCTGTGTAACCCTCGGTCCGTTATGATCTTA
839 ATGTGCTGCGTAACCCTCAGTCTGGTCTGAACTTA
* * * *
12807273 GATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAC
* * *
12807338 CAGAAGGGC-AGGATGCGTAAGCCGAGGATCGATCGGGTCCCCCTCTA-GTGCTGCCGATCCTAC
66 CAGAGGGGCGA-GATGCGCAAGCCG-GGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTAC
* * ** * *
12807401 TGCCGCAACCCTCAATCCGGTCTGATCTCAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCG
129 TGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * **
12807466 ACGAAATGAGC-GGCTGGGCAGACGGGTGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGC
194 ACGAAATGAGCGGGC-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
12807530 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATATTCATATTTCTGTGTGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
* * *
12807595 TTTATGGCTTGTAAATTCATACAATTGTCCCTTAATCCTTCACGTGAAGTTCCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
12807660 CCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGCTTCGGGATTTTTTAAAATTTTTTCG
388 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-TGGATTTTTTAAAA-TTTTTC-
* ** * * *
12807725 AAAAGGAGTTTTGGCAACAAACTTGGTAGACATGACCCTTGTATTTTTGTTGGTATGCACAAAAA
450 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
12807790 AATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACAATTTGAAAAAAGTTTCCCCATTTCA
515 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
12807855 GACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTAAGT
580 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
12807920 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATC
645 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
12807985 ATGTGCGCACACCCACT-GGCCCCTCCGATCG-CTGGAACCCCAATGCC-GCCGGTCAGGTTCTC
710 ATGTGCGCACACCC-CTCGGCCCCCCCGATCGTC-GGAACCCCAATGCCAG-CGGTCAGGTTCTC
* * * * ** * *
12808047 TGATGATGCAT-CGGCAATTGTGCCCCGATGAAGAAAAATGCGACACCAACACATGCCTGAGCCC
772 CGACGATGC-TCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
12808111 A
836 A
12808112 TGAAACGAGC
Statistics
Matches: 6074, Mismatches: 643, Indels: 463
0.85 0.09 0.06
Matches are distributed among these distances:
847 20 0.00
848 29 0.00
849 361 0.06
850 309 0.05
851 625 0.10
852 14 0.00
853 76 0.01
854 106 0.02
855 4 0.00
856 2 0.00
857 12 0.00
858 3 0.00
859 1 0.00
861 2 0.00
862 124 0.02
863 4 0.00
864 2 0.00
865 2 0.00
867 186 0.03
868 404 0.07
869 251 0.04
870 141 0.02
871 55 0.01
872 108 0.02
873 11 0.00
874 212 0.03
875 302 0.05
876 276 0.05
877 3 0.00
878 1 0.00
879 135 0.02
880 526 0.09
881 42 0.01
882 14 0.00
883 65 0.01
884 157 0.03
885 69 0.01
886 212 0.03
888 4 0.00
889 4 0.00
890 26 0.00
891 33 0.01
892 323 0.05
893 18 0.00
894 12 0.00
895 40 0.01
896 5 0.00
897 1 0.00
898 169 0.03
899 3 0.00
901 2 0.00
902 11 0.00
903 7 0.00
904 90 0.01
905 93 0.02
906 366 0.06
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (873 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGAC
CAGAGGGGCGAGATGCGCAAGCCGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTG
CCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGATTTTTTAAAATTTTTCAGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCAGCGGTCAGGTTCTCCGACGATGC
TCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT
GCGTAACCCTCAGTCTGGTCTGAACTTA
Found at i:12802943 original size:26 final size:26
Alignment explanation
Indices: 12802907--12802959 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12802897 CTGGTCTGAT
*
12802907 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12802933 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12802959 C
1 C
12802960 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12805547 original size:26 final size:26
Alignment explanation
Indices: 12805511--12805561 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
12805501 CGGTCTGATC
12805511 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
12805537 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
12805562 CCTAACTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:12806418 original size:26 final size:26
Alignment explanation
Indices: 12806389--12806441 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12806379 CCAATTCGAT
*
12806389 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12806415 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12806441 C
1 C
12806442 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12811385 original size:26 final size:26
Alignment explanation
Indices: 12811349--12811399 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12811339 CCAGTCCGAT
*
12811349 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12811375 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
12811400 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12811768 original size:26 final size:26
Alignment explanation
Indices: 12811739--12811788 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
12811729 GTCCGATCTA
*
12811739 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTAGGAATGAACTCCGTATGCTT
* *
12811765 AGACTATGAATGAACTCTGTATGC
1 AGACTAGGAATGAACTCCGTATGC
12811789 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTT
Found at i:12811796 original size:387 final size:380
Alignment explanation
Indices: 12811045--12811800 Score: 968
Period size: 387 Copynumber: 2.0 Consensus size: 380
12811035 ATTTTGTGAC
* *
12811045 CATTTGAAAAAAGTGCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
1 CATTTGAAAAAAGTGCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTC
*
12811110 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
66 AAATGCTCTTTAAGGGGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
12811175 CAAGTACCAGCACCCATCGCACACCCCCTTGGTCCCCCCGATCGTCGGAACCCCAATGCCATCGG
131 CAAGTACCAGCACCCATCGCACACCCCCCTGGTCCCCCCAATCATCGGAACCCCAATGCCATCGG
*
12811240 TCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAGTGCAGCACCAGCACATG
196 TCAA------CGA-GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATG
* * * * * *
12811305 CCCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCT
254 CCCGAGCCAAGCATCTACTGCCGTAACCCTCGGTCCAGTCCGATCTAAGACTGGGAATGAACTCC
* *
12811370 GTATGCTTAGATTGGGAATGAACTCCGTATACCTAAGTCAACCCATGAAATGAGCTTGCGAG
319 GTATGCTTAGACTAGGAATGAACTCCGTATACCTAAGTCAACCCATGAAATGAGCTTGCGAG
* *
12811432 CATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAATATCT
1 CATTTGAAAAAAGTG-CCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCT
* *
12811497 CAAATGCTCTTTAAGGGGGTGTGACTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAATGG
65 CAAATGCTCTTTAAGGGGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
12811562 CCAAGTGCCAGCACCCATCGCAAATCATGTGCATACACCCCCT-G-CCCCCTAATCATTGGAACC
130 CCAAGTACCAGCACCCATCG-----CA----C--AC-CCCCCTGGTCCCCCCAATCATCGGAACC
* * * **
12811625 CCAATGCCGTCGGTC-A-G-G-TTCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAA
183 CCAATGCCATCGGTCAACGAGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACC-A
* ***
12811686 G-ACATGCCCGAGCCAAGCATCTACTGCCGTAACCTTCGGTTTGGTCCGATCTAAGACTGGGAAT
247 GCACATGCCCGAGCCAAGCATCTACTGCCGTAACCCTCGGTCCAGTCCGATCTAAGACTGGGAAT
* * *
12811750 GAACTCCGTATGCTTAGACTATGAATGAACTCTGTATGCCTAAGTCAACCC
312 GAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATACCTAAGTCAACCC
12811801 GCGAAACAAG
Statistics
Matches: 321, Mismatches: 34, Indels: 28
0.84 0.09 0.07
Matches are distributed among these distances:
387 150 0.47
388 129 0.40
390 1 0.00
393 2 0.01
397 2 0.01
398 29 0.09
399 3 0.01
400 5 0.02
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (380 bp):
CATTTGAAAAAAGTGCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACACCCCCCTGGTCCCCCCAATCATCGGAACCCCAATGCCATCGG
TCAACGAGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGC
CAAGCATCTACTGCCGTAACCCTCGGTCCAGTCCGATCTAAGACTGGGAATGAACTCCGTATGCT
TAGACTAGGAATGAACTCCGTATACCTAAGTCAACCCATGAAATGAGCTTGCGAG
Found at i:12813433 original size:26 final size:26
Alignment explanation
Indices: 12813381--12813433 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12813371 CTGATCCGAT
* *
12813381 CTTAGAGTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
12813407 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
12813433 C
1 C
12813434 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:12813601 original size:912 final size:903
Alignment explanation
Indices: 12811825--12818256 Score: 7350
Period size: 912 Copynumber: 7.2 Consensus size: 903
12811815 CAGGCGCTCA
* * * * * * *
12811825 GCCGACCAGAGGGGCGGGATGCGGAAGCCGTAGATTGATAGGGTGGTAGGTGGGTTTAGGCAAAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
12811890 CTTCAAATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * * *
12811955 CTTCACGTGAAGTTTCATGGCAGGAAGACTCGTTTTTTATTATTCATGATTTTTGAAACTTTTTA
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTG
* * * ***
12812020 CGGGTCGGGATTTTTTTAAATTTTTCTGGAAGGAGTTTTGGAGAAAAACTTGGTAGACGTGATCC
195 CGGTTC-GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCC
*
12812085 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGA
259 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
12812150 CCTTTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
324 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * *
12812215 TCAAATGCTCTTTAAAGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATA-GGGGCCAACATAAGG
389 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
12812279 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCGCCCCGGCCCCCCCGATCGTCGGA
454 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCCCCCGATCGTCGGA
*
12812344 ACCCCAATGCCGTCGGTCAGGCTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAAT
518 ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-GTGATGGTGCCCCGACGAAGAAAAAT
*** * * ** *
12812409 GCATCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCTTTAGTCTGGTCC-AGTCTTA
582 GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGA-TCTTA
* * * * *
12812473 GACTGAGAATGAACT-CAGCATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTAAACCCATG
646 GACTGGGAATGAACTCCA-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
12812537 AAAAGAGCGTACGGGTGCT-AGGCCGGCCAT-AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
710 AAACGAGCGTACGGGCGCTCA-GCCGACC-TGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGG
* * ** * *
12812600 GTCCCCCTCTACGTGCTGTCGACCCTACTGTCGTAACCCTCGATCTGAAT-CAATCTTAGACTAG
773 GTCCCCCTCTACGTGCTGTCGATCCTGCTACCGTAACCCTCG-TCCG-ATCCAATCTTAGACTGG
* *
12812664 GAATGAACTCTGTATGCCTAAGCCAACCGA-AGAAACGAGCGGGCGAACGGGCGAGCGGGCGGGT
836 GAATGAACTCCGTATGCCTAAGCCAACCGACA-AAACGAGC-GG-G--C-GGCGAGCGGGCGGGC
12812728 GGGCACTAC
895 GGGCACTAC
12812737 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT-GTGGTGGTAGGTGGGTTTAGGCACA
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG-GGTGGTAGGTGGGTTTAGGCACA
* * * *
12812801 TCTTCATATTTATGCTTGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGTCCATTAAG
65 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
12812866 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTATGAAACTTTTT
130 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT-TGAAACTTTTT
* **
12812931 GCGGTTCTGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGAGACAAACTTGGTAGACGTGATC
194 GCGGTTC-GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATC
* ** * *
12812996 CTTGTATTTTTATTGGCATGTGCAAAAACATTCAGCTAAAAACTCGGAGTGTACAAGATTTTGTG
258 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
12813061 ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
323 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
12813126 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
388 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
12813191 GGCTAAGTAGCAGCACCCATCGCACATCTTGTGCACACACCCGCCCCGGCCCCCCCGATCGTCGG
453 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCCCCCGATCGTCGG
* * **
12813256 AACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTCCGTGATGGTGCCCCGGTGAAGAAAAAT
517 AACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGTGATGGTGCCCCGACGAAGAAAAAT
* * * *
12813321 ATGGCACCAACACATGCTCGAGCCCAGCATTTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAG
582 GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAG
* *
12813386 AGTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAA
647 ACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
12813451 ATGAGCGTACGGGCGCTCAGTCGACCTGAGGGGCGGGACGCGCAAGCCGAGGATCGGTCGGGTCC
712 ACGAGCGTACGGGCGCTCAGCCGACCTGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCC
* * * ** *
12813516 CCCTCTATGTGCTATCGATCCTGCTACCGCAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATG
777 CCCTCTACGTGCTGTCGATCCTGCTACCGTAACCCTC-GTCCGATCCAATCTTAGACTGGGAATG
* * * * *
12813581 AACTCTGTATGCCTAAGCCAACTGACAAAATGAGCGGGC-G-G-GCAGGCAGGCGGGCACTAC
841 AACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGCGAGCGGGCGGGCGGGCACTAC
* * * * * *
12813641 GCTGGCCAGAGAGACGAGATGCGTAAGCCATGGATCGATAGAGTGGTAGTTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
12813706 CTCCTTATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
12813771 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTA
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTG
* * * * **
12813836 CGGATCTGAATTTTTTGAAATTTTTTTGGATGGA-TTTTCAAACCCAAACTTGGTAGACGTGATC
195 CGGTTC-GGATTTTTTAAAATTTTTTTGGAAGGAGTTTT-GGACCCAAACTTGGTAGACGTGATC
*
12813900 CTTGTATTTTTTTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
258 CTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
12813965 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
322 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
12814030 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGATTGATGAGGGATAGGGGGCCAATATAG
387 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
**
12814095 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTGCA-CCCCCCGGCCCCCCCGATCGTCGG
452 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGG
* * * *
12814159 AA-CCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTGCGACGATGGTGCCCCGACGAAAAAAAA
517 AACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG-TGATGGTGCCCCGACGAAGAAAAA
*
12814223 TGTGGCACCAGCACAT------G-CC--C---T-C-G--G----TC-CGGTC---T--GATCTTA
581 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTA
* * * *** * * ** * *
12814262 GACTAGGAATGAACTCCATATAACTAAGTCAACCCACGAAGTGAGCGTACGGGTG-CTCAGTC-G
646 GACTGGGAATGAACTCCATAT-GCTTAG---A-CTGGGAA-TGAAC-TCCGTATGCCTAAGTCAA
* * * * * ** * * *
12814325 GCCA-G--AGGGGCG-A-GATGCGC-AAGCC-A-GGGATCGGTCGGG-T-C-C---CC----CTC
704 CCCACGAAACGAGCGTACG-GGCGCTCAGCCGACCTGA-GGGGCGGGATGCGCAAGCCGAGGATC
* ** * ** ** * * * * *
12814372 TGCTTGCTGGCGATCT---TGCTGTCCCAACC--CT-CGGTCTAA-TCT-GAT-CT---------
767 GGCCGGGTCCCCCTCTACGTGCTGT-CGATCCTGCTACCG--TAACCCTCG-TCCGATCCAATCT
* * * *
12814419 TAGACTGGGAATGAAGTCCATATGCCTCAGCCAACTGAC-AAA--A--------CGAGCGGGCGG
828 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGCGAGCGGGCGG
12814473 GCGGGCACTAC
893 GCGGGCACTAC
** * *
12814484 GTTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
12814549 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCCTTGTAAATTCATACACTGGTCCCTTAAG
66 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGG-CTTGTAAATTCATACAATGGTCCCTTAAG
* *
12814614 CCTTCACGTGAAGTTTCATGGCAGGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
130 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTT
* * * *** *
12814679 ACGGTTCGAGA-TTTTTAAAATTTTTTCGGAAGGTGTTTTATTCCCAAACTTGGTAGATGTGATC
194 GCGGTTCG-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATC
* * *
12814743 CTTGTATTCTTTTTGGCATGCACAAAAAAATTCAGCGAAAAATTCGAAGTGTACAAGATTTTGTG
258 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
12814808 ACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATTGCTACTGGCAGCACACCTGTAAAAT
323 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * * * *
12814873 CTAAAATGCTCTTTACGGGGGTGTGAGTTCTCGAGGTTTGATCAGAGATA-AGGGCCAACATAAG
388 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
12814937 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA------C--CCCCTCTGATCGTCGGA
453 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGA
* * *
12814994 ACCCCAATGCCGACGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCTCGACGAAGAAAAAT
518 ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-GTGATGGTGCCCCGACGAAGAAAAAT
* * * * * * ** * **
12815059 GCGGCACC-GATACAAGCCCGAGCCCAGCATGTGCTACCGTAACCTTCCATCTGGTCTAATCTTA
582 GTGGCACCAG-CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTA
**
12815123 GACT-GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAAACG-
646 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * ** * * * *
12815186 AACGAGCGTGCAGGCATTCAGCC-AGCCTGAGGGACGAGATGCGCAAGCTGAGGATCGACCGGGT
711 AACGAGCGTACGGGCGCTCAGCCGA-CCTGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGT
* *
12815250 CCCCCTCTGCGTGTTGTCGATCCTGCTACCGTAACCCTCTGTCCGATCCAATCTTAGACTGGGAA
775 CCCCCTCTACGTGCTGTCGATCCTGCTACCGTAACCCTC-GTCCGATCCAATCTTAGACTGGGAA
* * ** * *
12815315 TGAACTTCGTATGCCTAAGCCAACTGATGAAACGAGCAGGC-G-G-GCGGGCGGGTGGGCACTAC
839 TGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGCGAGCGGGCGGGCGGGCACTAC
* *
12815377 GACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* **
12815442 CTCCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
12815507 CATCACGTGAA-TTATCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTT
131 CTTCACGTGAAGTT-TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTT
* * * *
12815571 GCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCCCCAAACTTGGTGGACGTGATC
194 GCGGTTC-GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATC
*
12815636 CTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
258 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
12815701 ACCATTTGAAAAAAGAGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
323 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
12815766 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
388 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
12815831 GGCTAAGTAGCAGCACCCATCGCACATCTTGTGCGCACACCCGCCCCGGCCCCCCCGATCGTCGG
453 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCCCCCGATCGTCGG
*
12815896 AACCCCAATGCCGTCGGTCAGGTTCTCTGCTGATGCTCCGGTGATGCTCCAGCGATGGTGCCCCG
517 AACCCCAATGCCGTCGGTCAGGTTCTC--C-G--G---C---GATGCTCC-GTGATGGTGCCCCG
* * * * ** *
12815961 ACGAAGAAAAATGCGGCACCAACACATGCCC-AACCCTAGCACGTGCTGTTGTAACCCTCGGTC-
570 ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC-AGCATGTGCTGCCGCAACCCTCGGTCT
* *
12816024 CAGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
634 GA-TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
** * * ** * * * * *
12816089 AGTCAACCCACGAAACGAGCGTGTGGGTGGTCAATCGGCCAGAGGGTCGGGATGCGCAAGACGGG
698 AGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCTGAGGGGCGGGATGCGCAAGCCGAG
* * * * * ** * **
12816154 GATCGACCGAGTCCCCCTCTGCATGGTG-CTGATCCTGCTACTATAACCCTCAGTTCGATCTGAT
763 GATCGGCCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTACCGTAACCCTC-GTCCGATCCAAT
* *
12816218 CTTAGACTGGGAATGAAATCCGTATGCCTAAACCAACCGACAAAACGAGCGGGCGG-GA------
826 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGCGAGCGGGC
*
12816276 --------ACTAT
891 GGGCGGGCACTAC
* * *
12816281 GCCGGCCAGAGAGACAGGATGCACAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
12816346 CATCATATTTCTACGTGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
12816411 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTG
* * * *
12816476 TGGTTCGAGATTTTTT-AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATTATCC
195 CGGTTCG-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCC
* *
12816540 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTTA
259 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
12816605 CCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAGAATT
324 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
12816670 TCGAATGCTCTTTAA-GGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATATAAGG
389 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
** * * * *
12816734 GCCAAGTACCAGCACCCATCATACATCATGTGAGCACAGCCCCCCCTGGCCCCTCCAATCGCCGG
454 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCC-GGCCCCCCCGATCGTCGG
** * * * **
12816799 AACCCCAACACTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAA
517 AACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG-TGATGGTGCCCCGACGAAGAAAAA
** * * * * * *
12816864 TACGGCACCAGCACATGCCCGAGTCCAACATGTGCTACCGCAACCCTTGGTCCGGTCCGATCTTA
581 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTA
* * * * *
12816929 GACTGGCAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTATGTCAA-CAATTG
646 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CG
* * * * *
12816993 AAACGAGCGTGC-GGCTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGG
710 AAACGAGCGTACGGGC-GCTCAGCCGACCTGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGG
* * ** * * **
12817057 TCCCCCTCTACGTGCTG-CCATTCCTGCTGCTATAACCCTCAGTCAGGTCTGATCTTAGACTGGG
774 TCCCCCTCTACGTGCTGTCGA-TCCTGCTACCGTAACCCTC-GTCCGATCCAATCTTAGACTGGG
* * * *
12817121 AATGAACTCCGTATGCCTAAGACAACCGAC-GAA--A--------CGAGTGGGTGGGCGGGCACT
837 AATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGCGAGCGGGCGGGCGGGCACT
12817175 AC
902 AC
* * *
12817177 GCTGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
12817242 CTTCATAATTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * * *
12817307 CTTCACATGAAGTTCCATGGCAAGACGTCTCATTTTCTATTTTTCATGATTTTCCAAA-TTTTTG
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTG
* * *
12817371 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCC
195 CGGTTCG-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCC
* * * *
12817436 TTGTATTTTTCTTCGCATGCAAAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGT
259 TTGTATTTTTTTTGGCATGC--ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
12817501 AACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
322 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
12817566 TCTCAAATGCTCTTTATGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
387 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
12817631 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCAG
452 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGG
* * ** * *** *
12817695 AACCCCATTGGCACCGATCAGGTTCTCTAACGATGCTCCGATGATGGTGCCCTGACGAAGAAAAA
517 AACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG-TGATGGTGCCCCGACGAAGAAAAA
* ** * * *
12817760 TGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTTGGT-TCAGTCTGATCTT
581 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGA-TCCGATCTT
* * *
12817824 AGACTGGGAATGAACTCCGTATGCTTCGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACG
645 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * ** * *
12817889 AAATGAGCGTGA-AGGCACTCAGCCG-GCTAAAGGGGTAGGATGCGCAAGCCAAGGATCGGCCAG
710 AAACGAGCGT-ACGGGCGCTCAGCCGACCT-GAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGG
* * * * * ** * * * *
12817952 GTCCCCCTTTGCATGCTGCCAATCC-GCTGTCGCAACCCTCGATCCGGTTCAATCTTAGACTAGG
773 GTCCCCCTCTACGTGCTGTCGATCCTGCTACCGTAACCCTCG-TCCGATCCAATCTTAGACTGGG
*
12818016 AATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAGCGGGC-G-G-GCGGGCGGGCGGGCACT
837 AATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGCGAGCGGGCGGGCGGGCACT
*
12818078 AT
902 AC
* * * *
12818080 ACCGGCTAGAGAGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
** *
12818145 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGA
66 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
12818210 CTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
12818257 AAAAATTCAG
Statistics
Matches: 4728, Mismatches: 599, Indels: 395
0.83 0.10 0.07
Matches are distributed among these distances:
834 17 0.00
835 64 0.01
836 2 0.00
841 49 0.01
842 150 0.03
843 169 0.04
844 97 0.02
845 4 0.00
847 1 0.00
848 2 0.00
850 3 0.00
851 36 0.01
853 5 0.00
854 10 0.00
855 5 0.00
856 5 0.00
857 5 0.00
858 2 0.00
859 10 0.00
860 22 0.00
861 16 0.00
862 5 0.00
863 8 0.00
864 4 0.00
866 10 0.00
870 11 0.00
872 4 0.00
873 9 0.00
874 5 0.00
875 5 0.00
876 9 0.00
877 30 0.01
878 9 0.00
879 6 0.00
881 2 0.00
882 14 0.00
883 11 0.00
884 5 0.00
885 34 0.01
886 3 0.00
887 1 0.00
888 1 0.00
889 2 0.00
890 1 0.00
891 15 0.00
892 354 0.07
893 324 0.07
894 51 0.01
895 84 0.02
896 474 0.10
897 14 0.00
898 116 0.02
899 81 0.02
900 1 0.00
901 2 0.00
902 116 0.02
903 500 0.11
904 455 0.10
905 208 0.04
906 2 0.00
908 1 0.00
910 1 0.00
911 9 0.00
912 663 0.14
913 120 0.03
914 78 0.02
915 57 0.01
916 137 0.03
917 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAACTTTTTGC
GGTTCGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTT
GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACC
CCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGTGATGGTGCCCCGACGAAGAAAAATGTGG
CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTG
GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTACGGGCGCTCAGCCGACCTGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCT
CTACGTGCTGTCGATCCTGCTACCGTAACCCTCGTCCGATCCAATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGCGAGCGGGCGGGCGGGCACTAC
Found at i:12815153 original size:25 final size:26
Alignment explanation
Indices: 12815119--12815170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12815109 CTGGTCTAAT
12815119 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12815144 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12815170 C
1 C
12815171 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12816084 original size:26 final size:26
Alignment explanation
Indices: 12816033--12816085 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12816023 CCAGTCCGAT
*
12816033 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12816059 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12816085 C
1 C
12816086 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12817730 original size:896 final size:893
Alignment explanation
Indices: 12814258--12818256 Score: 5046
Period size: 896 Copynumber: 4.5 Consensus size: 893
12814248 CCGGTCTGAT
* * ** * ** * * *
12814258 CTTAGACTAGGAATGAACTCCATATAACTAAGTCAACCCACGAAGTGAGCGTACGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGCTGCTCAGC
* * * * *
12814323 CGGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCTTGCTGGCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCT-GCGATCC
** * * * *
12814388 TGCTG-TCCCAACCCTCGGTCTA-ATCTGATCTTAGACTGGGAATGAAGTCCATATGCCTCAGCC
130 TGCTGCT-ATAACCCTCAGTC-AGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** *
12814451 AACTGACAAAACGAGCGGGCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCATG
193 AACCGACAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
12814516 GATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* * *
12814581 TGGCCTTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGATGACTC
323 TGG-CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
12814646 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTAAAATTTTTTCGGAA
387 GTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* *** *
12814710 GGTGTTTTATTCCCAAACTTGGTAGATGTGATCCTTGTATTCTTTTTGGCATGCACAAAAAAATT
452 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTTTGGCATGCACAAAAAAATT
* *
12814775 CAGCGAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
516 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
12814840 ATTTAATTGCTACTGGCAGCACACCTGTAAAATCTAAAATGCTCTTTACGGGGGTGTGAGTTCTC
581 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA-GGGGGTGTGAGTTCTC
* * * *
12814905 GAGGTTTGATCAGAGATA-AGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
645 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
12814969 GCGCACA------C--CCCCTCTGATCGTCGGAACCCCAATGCCGA-CGGTCAGGTTCTCCGACG
710 GCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC-ACCGGTCAGGTTCTCCGACG
** * * *
12815025 ATGCTCCGGTGATGGTGCCTCGACGAAGAAAAATGCGGCACC-GATACAAGCCCGAGCCCAGCAT
774 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG-CACATGCCCGAGCCCAGCAT
* ** ** **
12815089 GTGCTACCGTAA-CCTTCCATCTGGTCTAATCTTAGACT-GGAATGAACTCCATATG
838 GTGCTACCGCAACCCTT-GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
*
12815144 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAAACG-AACGAGCGTGCAGGCAT--TCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGC-GGC-TGCTCA
* * * * * * * * *
12815206 GCCAGCCTGAGGGACGAGATGCGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCGTGTTGTCGAT
64 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTG-CGAT
* ** * * ** *
12815271 CCTGCTACCGTAACCCTCTGTCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
128 CCTGCTGCTATAACCCTCAGTCAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** *
12815336 AACTGATGAAACGAGCAGGCGGGCGGGCGGGTGGGCACTACGACGGCCAGAGAGACGGGATGCGC
193 AACCGACAAAAC--G-A-GCGGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
12815401 AAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTATGTGCCAATGC
250 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
*
12815466 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAA-TTATCATGGCAA
315 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT-TCATGGCAA
* * *
12815530 GATGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTT
379 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
* * * *
12815595 TTTTGGAAGTAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTGGCATGCATA
444 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACA
*
12815660 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCAT
508 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
12815725 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
573 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AGGGGGTGT
* *
12815790 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTAGCAGCACCCATCGCA
637 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * **
12815855 CATCTTGTGCGCACACCCGCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
702 CATCATGTGCGCACACCC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTT
*
12815920 CTCTGCTGATGCTCCGGTGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAAC
766 CTC--C-GA-----C---GATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * *** * *
12815984 ACATGCCC-AACCCTAGCACGTGCTGTTGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATG
819 ACATGCCCGAGCCC-AGCATGTGCTACCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATG
*
12816048 AACTTCATATG
883 AACTCCATATG
* * * * **
12816059 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGGTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGCTGCTCAGC
* * * * *
12816124 CGGCCAGAGGGTCGGGATGCGCAAGACGGGGATCGACCGAGTCCCCCTCTGCATGGTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGC-GATCC
* * *
12816189 TGCTACTATAACCCTCAGTTC-GATCTGATCTTAGACTGGGAATGAAATCCGTATGCCTAAACCA
130 TGCTGCTATAACCCTCAG-TCAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
12816253 ACCGACAAAACGA----GCGGGCGGGAACTATGCCGGCCAGAGAGACAGGATGCACAAGCCGTGG
194 ACCGACAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
12816314 ATTGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTACGTGCTAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
12816379 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
12816444 TTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTT-AAATTTTTTTGGAAGG
389 TTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* *
12816508 AGTTTTGGCCCCAAACTTGGTAGACATTATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCA
* *
12816573 GCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCTATTTCAGACACT
518 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * * * *
12816638 TTAATGGCTACTGGCAGCAAACCTATAGAATTTCGAATGCTCTTTAAGGGGTGTGAGTTCTCAAA
583 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGTGTGAGTTCTCGAG
** *
12816703 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGAG
648 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * ** ***
12816768 CACAGCCCCCCCTGGCCCCTCCAATCGCCGGAACCCCAACACTGTCGGTCAGGTTCTCCGACGAT
713 CACA-CCCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGAT
** * * *
12816833 GCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGTCCAACATGTG
776 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
12816898 CTACCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGCAATGAACTCCATATG
841 CTACCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
12816951 CTTAGACTGGGAATGAACTTCGTATGCCTATGTCAA-CAATTGAAACGAGCGTGCGGCTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAA-CGAAACGAGCGTGCGGCTGCTCAG
* * * *
12817015 CCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCATTC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCGA-TC
* *
12817080 CTGCTGCTATAACCCTCAGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACA
129 CTGCTGCTATAACCCTCAGTCAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
12817145 ACCGACGAAACGAGTGGGTGGGCGGGCACTACGCTGACCAGAGAGACGGGATGCGCAAGCCGTGG
194 ACCGACAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
12817210 ATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTGCGTGCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* * * *
12817275 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTCCATGGCAAGACGTCTCAT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
12817340 TTTCTATTTTTCATGATTTTCCAAA-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
389 TTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * *
12817404 AGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTCTTCGCATGCAAAAAAAAAAATT
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGC--ACAAAAAAATT
* * *
12817469 CAGCTAAAAACTTGAAGTGTACAAGATTTTGTAACCGTTTGAAAAAAGTGTCCCCATTTCAGACA
516 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
12817534 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTT
581 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA-GGGGGTGTGAGTTCTC
12817599 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
645 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * **
12817664 GCGCACA-CCCCCCGGCCCCCCCGATCGCCAGAACCCCATTGGCACCGATCAGGTTCTCTAACGA
710 GCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGA
* * * *
12817728 TGCTCCGATGATGGTGCCCTGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGT
775 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
12817793 GCTATCGCAACCCTTGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
840 GCTACCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * *
12817847 CTTCGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAAGGC-ACTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTG-CGGCTGCTCAG
* * ** ** * * *
12817911 CCGGCTAAAGGGGTAGGATGCGCAAGCCAAGGATCGGCCAGGTCCCCCTTTGCATGCTGCCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTG-CGATC
** * * * *
12817976 C-GCTG-TCGCAACCCTC-GATCCGGT-TCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
129 CTGCTGCT-ATAACCCTCAG-TCAGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * *
12818037 CCAACCGACAAAACAAGCGGGCGGGCGGGCGGGCGGGCACTATACCGGCTAGAGAGATGGGATGC
191 CCAACCGAC--AA-AA-----CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
12818102 GCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAT
248 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
* *
12818167 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCTCGTGAAGTTTCATGGCA
313 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
12818232 AGACGACTCGTTTTCTATTTTTCAC
378 AGACGACTCGTTTTCTATTTTTCAC
12818257 AAAAATTCAG
Statistics
Matches: 2705, Mismatches: 328, Indels: 143
0.85 0.10 0.05
Matches are distributed among these distances:
884 1 0.00
885 123 0.05
886 38 0.01
887 2 0.00
888 1 0.00
889 10 0.00
891 7 0.00
892 369 0.14
893 313 0.12
894 54 0.02
895 79 0.03
896 488 0.18
897 14 0.01
898 117 0.04
899 81 0.03
900 2 0.00
901 2 0.00
902 89 0.03
903 431 0.16
904 200 0.07
905 3 0.00
906 2 0.00
908 6 0.00
911 1 0.00
913 5 0.00
914 76 0.03
915 62 0.02
916 127 0.05
917 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGCTGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCGATCCT
GCTGCTATAACCCTCAGTCAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCC
GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
GCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:12818656 original size:26 final size:26
Alignment explanation
Indices: 12818620--12818672 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12818610 CCGGTTTGAT
12818620 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
12818646 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12818672 C
1 C
12818673 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12819057 original size:800 final size:794
Alignment explanation
Indices: 12817462--12819338 Score: 2857
Period size: 800 Copynumber: 2.4 Consensus size: 794
12817452 ATGCAAAAAA
* * *
12817462 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTAACCGTTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
12817527 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
12817592 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
131 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
12817657 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCATTGGCACCGATCAGGTTCTC
196 ATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** ** * * * *
12817722 TAACGATGCTCCGATGATGGTGCCCTGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCA
260 CGACGATGCTCTAATGATGGTGCCCCGAAGAAGAAAAATGCGACACCAACACATGCCCGAGCCCA
* * * *
12817787 GCATGTGCTATCGCAACCCTTGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTCG
325 GCATGTGCTATCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * *
12817852 ACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAAGGCACTCAGCCGGCT
390 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAAGGCACTCAGCCGACC
*
12817917 AAAGGGGTAGGATGCGCAAGCCAAGGATCGGCCAGGTCCCCCTTTGCATGCTGCCAATCCGCTGT
455 AAAGGGGTAGGATGCGCAAGCCAAGGATCGGCCAGGTCCCCCTCTGCATGCTGCCAATCCGCTGT
* *
12817982 CGCAACCCTCGATCCGGTTCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACA
520 CGCAACCCTCGATCCGGTTCAATCTTAGACTAGGAATGAACTCCGCATGCCTAAGCCAACCAACA
** * * * * *
12818047 AAACAAGCGGGCGGGCGGGCGGGCGGGCACTATACCGGCTAGAGAGATGGGATGCGCAAGTCGTG
585 AAACAAGCGGGCGGGCGAACGGGCAGACACTACACCGGCCAGAGAGACGGGATGCGCAAGTCGTG
12818112 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
650 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
*
12818177 TGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCTCGTGAAGTTTCATGGCAAGACGACTCG
715 CGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCTCGTGAAGTTTCATGGCAAGACGACTCG
*
12818242 TTTTCTATTTTTCAC
780 TTTTCTATCTTTCAC
12818257 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
12818322 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
12818387 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
131 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
12818452 ATCATGTGCGCATACCACCCCCTCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
196 ATCATGTGCGC--A-CACCCCC-CGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * *
12818517 TCTCCGACGATGCTCTAATGATGGTGCCCCGAAGAAGAAAAATGCGGCACCAACGCATGCCTGAG
256 TCTCCGACGATGCTCTAATGATGGTGCCCCGAAGAAGAAAAATGCGACACCAACACATGCCCGAG
* * * *
12818582 CCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCATATGC
321 CCCAGCATGTGCTATCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGC
* ** ** *
12818647 TTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTC
386 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAAGGCACTCAGCC
* * * ** * * ** * * *
12818712 GACCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCTT
451 GACCAAAGGGGTAGGATGCGCAAGCCAAGGATCGGCCAGGTCCCCCTCTGCATGCTGCCAATC-C
* * *
12818777 GCTG-CAGCAACCCTCGATCC-GTTCCGATCTTAGTCTGGGAATGAACTCCGCATGCCTAAGCCA
515 GCTGTC-GCAACCCTCGATCCGGTT-CAATCTTAGACTAGGAATGAACTCCGCATGCCTAAGCCA
* * * ** *
12818840 ACCAACGAAACGAGCGGGTGGGCGAACGGGCAGACACTACGTCGGCCAGAGAGACGGGATGTGCA
578 ACCAACAAAACAAGCGGGCGGGCGAACGGGCAGACACTACACCGGCCAGAGAGACGGGATGCGCA
12818905 AG-CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
643 AGTC-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
*
12818969 CATTTTTACGG-TGTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAA
707 CATTTTTACGGCT-TGTAAATTCATACAATGGTCCCTTAAGACTTCTCGTGAAGTTTCATGGCAA
12819033 GACGACTCGTTTTCTATCTTTCAC
771 GACGACTCGTTTTCTATCTTTCAC
*
12819057 AAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
12819122 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAA-GGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
12819186 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCAC
131 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
12819251 ATTATGTGCGCACATCCCCCCGACCCCCCGATCGTTGGAACCCCAATGCCGCCGGTCAGGTTCTC
196 ATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
12819316 CGACGATGGTCTAA-CATGGTGCC
260 CGACGATGCTCTAATGATGGTGCC
12819339 TCGATGATGA
Statistics
Matches: 987, Mismatches: 84, Indels: 23
0.90 0.08 0.02
Matches are distributed among these distances:
794 8 0.01
795 249 0.25
796 10 0.01
797 7 0.01
798 13 0.01
799 334 0.34
800 366 0.37
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (794 bp):
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
GACGATGCTCTAATGATGGTGCCCCGAAGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAG
CATGTGCTATCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAAGGCACTCAGCCGACCA
AAGGGGTAGGATGCGCAAGCCAAGGATCGGCCAGGTCCCCCTCTGCATGCTGCCAATCCGCTGTC
GCAACCCTCGATCCGGTTCAATCTTAGACTAGGAATGAACTCCGCATGCCTAAGCCAACCAACAA
AACAAGCGGGCGGGCGAACGGGCAGACACTACACCGGCCAGAGAGACGGGATGCGCAAGTCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAC
GGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCTCGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATCTTTCAC
Found at i:12820180 original size:26 final size:26
Alignment explanation
Indices: 12820142--12820194 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12820132 TCGGTCTTAT
12820142 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12820168 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12820194 C
1 C
12820195 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12821871 original size:26 final size:26
Alignment explanation
Indices: 12821835--12821887 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12821825 CCTATCCGAT
* *
12821835 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12821861 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12821887 C
1 C
12821888 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12823681 original size:26 final size:26
Alignment explanation
Indices: 12823652--12823702 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12823642 CTATCCGATC
*
12823652 TTAGATTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
12823678 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
12823703 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:12824587 original size:26 final size:26
Alignment explanation
Indices: 12824551--12824603 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12824541 CTGGTCTGAT
12824551 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12824577 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12824603 C
1 C
12824604 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12825435 original size:898 final size:896
Alignment explanation
Indices: 12821181--12825475 Score: 5409
Period size: 899 Copynumber: 4.8 Consensus size: 896
12821171 GCTGGCACAA
* * ** * *
12821181 CGGGTGGGCGGGCGGGCATTACGCCGATTAGAGAGATGGGATGCGCAAGTCGTGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
**
12821246 TGGTAGGTGGGTTTCA-GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAA
65 TGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * *
12821310 ATTCATACAATGGTCCCTCAAGCCTTCACGTGAAG-TTCATGGCAAGACAACTCCATTTTCTATT
129 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-CGTTTTCTATT
* * * * * *
12821374 TTTCACGATTGTCAAAATTTTTTGCGATTCAGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTG
193 TTTCATGATT-TTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTG
* * * *
12821438 GCCAAAAACTTGATAGACATGATCTTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAA
256 GCC-CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
12821503 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGG
320 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
12821568 CTACTGGCAGCGAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
385 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * *
12821633 TGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCGCCCATCGCACATCATGTGCGCACACC
450 TGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
* * * * *
12821698 CCCCCGACCCCCCAATCATCGGAAACCTAATGCCGCCAGTCAGG----T------T-CTCCAGCG
515 CCCCCGGCCCCCCGATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCAGCG
* * * *
12821752 ATGGTACCCCGACAAAGAAAAATGTGACACCAACACATGCCCGAGCCTAGCATGTGCTGCCGTAA
580 ATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAA
* *
12821817 CCCTC-GATCCTATCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
645 CCCTCAG-TCCTGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * * *
12821881 CGTATGCCGAAGTCAACCCACGAAACAAGTGTGTGGTTGCTCAGTCGACCAGAGGGGTGGGAT-A
709 CGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGAGATGA
* * * * * * *
12821945 CGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCTTGTTGCCAATCCTGCTGCTGCAACCCTCAGT
774 -GCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCTAATCCTACTGCCGCAACCCTCAGT
** * *
12822010 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAA
838 CCGGTCCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
* * * * *
12822069 CGGGCTGACGGGCGGGCGGGCACTATGCCGACTAGAGGGACGAGATGCGCAAGTCGTGGATCGAT
1 C-GG--G-CGGGCGGGCGGGCACTACGCCG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
12822134 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
61 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* * * *
12822199 TAAATTTATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTA
126 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
12822264 TTTTTCACGATTTTTAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTT-GTGAAGGAGTTT
191 TTTTTCATGA-TTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG-AAAGGAGTTT
* * ** *
12822328 TGGCATCAAACTTGGTGGATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTTC-GCT
254 TGGC-CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAA-TTCAGCT
* * *
12822392 AAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAAGTGTCCCTATTCCAGACACTT
316 -AAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTT
*
12822457 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
379 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
12822522 GTTTGATGAGGGATAA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTAC
444 GTTTGATGAGGGA-AAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* * ** *
12822586 GCATA-----AC--CCCCCCGATCACCGGAACCCTAATGCCATCGGTCAGGTTCTTCGACAATGC
508 GCACACCCCCCCGGCCCCCCGATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGACGATGC
* * *
12822644 TCCTGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCGAGACATGCCCGAGCCCAGCATGTGCT
573 TCCAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCT
* * * *
12822709 GCCGTAACCCTCGGTCCTGTCCAATCTTAGATTGGGAATGAATTCCATATGCTTAGACTGGGAAT
638 GCCGTAACCCTCAGTCCTGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * ** * * *
12822774 GAACTTCGTATGCCTAAGTAAACCCACGAAATGAGCGTACGGGTGCTTAGCCGGCCAGAGGGGCG
703 GAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCG
* * * * * * *
12822839 GGATGTGCAAGCCGGGGATCGGTCGAGTCCCCCTCTGTGTGCTG-TCAATCTTACTTCCACAACC
768 AGATGAGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCT-AATCCTACTGCCGCAACC
* * * * ** * * * *
12822903 CTCAGTTCGGTCTGATCTAAGATTGGGAATGAACTCCGTTTGCCTAAGCCAATCGACGAAATGAG
832 CTCAGTCCGGTCCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
* * * * * *
12822968 CGGGCGGGTGAGCCAGCGGGCACCACGTCGGCCAGAGAAACGGGATGTGCAAGCCGTGGATCAAT
1 CGGGCGGGCG-G---GCGGGCACTACG-CCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
12823033 AGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
61 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
12823098 TAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGGTTTCTA
126 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
12823163 TTTTTCATGATTTTCGAAAC-TTTTAGCAGTTCGGGATTTTTTAAAATTTTTTCGGAA-GACGTT
191 TTTTTCATGATTTT-AAAACTTTTTA-CGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA-GTT
12823226 TTGGCCCCAAACTTGGTAGAC-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
253 TTGG-CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * **
12823290 AAAACTCAAAGTGTACAAGATTTTGTTGACTCATTTGACAAAAGCATCTCCCA-TTCTAGACACT
317 AAAACTCGAAGTGTACAAGATTTTG-TGAC-CATTTGAAAAAAGTGTC-CCCATTTC-AGACACT
*
12823354 TTAATGGCTACTGGCAGCAAACTTGTAAAAATCTCAAATGCTTCCTTTAAGGGGGGTGTGCA-TG
378 TTAATGGCTACTGGCAGCAAACCTGT-AAAATCTCAAATGC-T-CTTTAA-GGGGGTGTG-AGT-
* *
12823418 TCTACCGAGGTTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATTCAC-
437 TCT--CGAGG-TTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCACA
* * * * * * *
12823482 CATCATGTGCGCATAACCCCCCCCGG-CCCCCGATCGCTGG-ACCCCAATATCTCGTCGGTTAGG
498 CATCATGTGCGCA-CA-CCCCCCCGGCCCCCCGATCACCGGAACCCTAAT-GC-CGCCGGTCAGG
* * * * **
12823545 TTCTCCGGCGATGCTCCTGGCGATGGTTGCCCAGGTGAAGAAAAATGTGGCACCAACACATGCCC
559 TTCTTCGACGATGCTCC-AGCGATGG-TGCCCCGACGAAGAAAAATGTGGCACCAACACATG-CC
*
12823610 CGAGCCCAGCATGTGCTGCCGT-ACCCTCAGTCCTATCCGATCTTAGATTGGGAATGAACTCCGT
621 CGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCTGTCCGATCTTAGATTGGGAATGAACTCCGT
* * * *
12823674 ATGATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGAGTGCTC
686 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTC
*
12823739 AGTCGACCAGAGGGGC-AGGATGAGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGGC-
751 AGCCGACCAGAGGGGCGA-GATGAGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCT-GCT
** * * * *
12823802 AATCCTGTTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACCAATAATGAACTCCGTATGCCTAA
814 AATCCTACTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTAAGAATGAACTCCGTATGCCTAA
*
12823867 GCCAACCGATAAAACGAG
879 GCCAACCGATGAAACGAG
* * * *
12823885 CGGGCGGATGGGTGGGCGGGCACTACGCCTGCTAGAGAGACGTGATGCGCAAGCTGTGGATCGAT
1 CGGGC----GGGCGGGCGGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
12823950 AGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTG
61 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
*
12824015 TAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
126 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
12824080 -TTTTCACT-ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGGAGTT
191 TTTTTCA-TGATTTT-AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGGAGTT
* * * *
12824143 TTGGCCCCAACTTGGTAGACATGATCCTTGTATTTTTGTT-GTATGCACAAAACATTTCAGCTAA
253 TTGGCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
12824207 AAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAAT
318 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
12824272 GGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTT
383 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
** * *
12824337 GATGAGGGATAA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATTTGTG--C
448 GATGAGGGA-AAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
* * * * *
12824399 ACCCCCCCGGCCCGCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTC-TCCAGCCATGCTC
512 ACCCCCCCGGCCC-CCCGATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGA-CGATGCTC
* * * * * *
12824463 C-GATGATGGTGCCCCGATGAAGAAAAATGCGACACCAACACATGCCTGAGCCCAGCATGTGCTA
575 CAG-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
* * *
12824527 CCGCAACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
639 CCGTAACCCTCAGTCCT-GTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
*
12824591 GAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCG
703 GAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCG
* * * * *
12824656 AGATGAGCAAGTCGGGGATCGGCCTG-GTCCCCCTCTCCGTGCTGCTGATCCTACTACCGTAACC
768 AGATGAGCAAGCCGGGGATCGGCC-GAGTCCCCCTCTGCGTGCTGCTAATCCTACTGCCGCAACC
* * * * * *
12824720 CTCGGTCTGGTCTGATCTTAGGCTAAGAATGAACTCCGTATACCTAAGCCAATC-ATCGAAACGA
832 CTCAGTCCGGTCCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGAT-GAAACGA
12824784 G
896 G
* * * * * *
12824785 CTGGCGGGCGGGCGGGCACTAAGCCAGCCAAAGAGTCGGGACGCGCAAGCCGTGGATCGATAGGA
1 CGGGCGGGCGGGCGGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
12824850 TGGTAGGTGGGTTTAGGCTCCTCTTCATATTCCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
65 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
12824915 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTT
130 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
12824980 TCATGAATTTTGAAACTTTTTACGGTTCGGG-TTCTTTTAAAATTTTTTCGAAAGGCGTTTTGGC
195 TCATG-ATTTTAAAACTTTTTACGGTTCGGGATT-TTTTAAAATTTTTTCGAAAGGAGTTTTGGC
** *
12825044 CCGAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAG
258 CC-AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
12825109 TCGACGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCT
322 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
12825174 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTTTGAGTTCTTGAGGTTTGATG
387 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
12825238 AGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC
452 AGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC
* * * *
12825303 CCCGGCCCCCCGATCGCCGGAACCCTAATGCCACCGGTCAGGTTCTTTGATGATGCTCCAGCGAT
517 CCCGGCCCCCCGATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCAGCGAT
** * *
12825368 GGCACCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACC
582 GGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACC
* * * * * *
12825433 CTCGGT-CTGGACTGATTTTAGACTGGGAACGAACTCCGTATGC
647 CTCAGTCCT-GTCCGATCTTAGATTGGGAATGAACTCCGTATGC
12825476 CTAAGTCAGC
Statistics
Matches: 2968, Mismatches: 331, Indels: 206
0.85 0.09 0.06
Matches are distributed among these distances:
888 32 0.01
889 2 0.00
890 1 0.00
891 2 0.00
892 245 0.08
893 29 0.01
894 38 0.01
895 152 0.05
896 221 0.07
897 168 0.06
898 346 0.12
899 553 0.19
900 255 0.09
901 23 0.01
902 33 0.01
903 13 0.00
904 10 0.00
905 58 0.02
906 62 0.02
907 5 0.00
908 3 0.00
909 10 0.00
910 6 0.00
911 1 0.00
912 14 0.00
913 44 0.01
914 30 0.01
915 27 0.01
916 108 0.04
917 444 0.15
918 27 0.01
920 1 0.00
921 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CGGGCGGGCGGGCGGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
CATGATTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCA
AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
AAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCG
GCCCCCCGATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCAGCGATGGTG
CCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCA
GTCCTGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGAGATGAGCAAGCC
GGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCTAATCCTACTGCCGCAACCCTCAGTCCGGTCCG
ATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
Found at i:12826341 original size:805 final size:805
Alignment explanation
Indices: 12824822--12827037 Score: 3676
Period size: 805 Copynumber: 2.8 Consensus size: 805
12824812 CCAAAGAGTC
* * * * * * *
12824822 GGGACGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTT-AGGCTCCTCTTCATATTCCTGC
1 GGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTCA-GCACATCTTCATATTTCTGT
*
12824886 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
65 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
12824951 TCATGGCAAGACGACTCGTTTTCTGTTTTTCATGAATTTTGAAACTTTTTACGGTTCGGGTTCTT
130 TCATGGCAAGACGACTCGTTTTCTGTTTTTCATGAATTTTGAAACTTTTTACGGTTCGGGTTCTT
12825016 TTAAAATTTTTTCGAAAGGCGTTTTGGCCCGAAACTTGGTAGATGTGATCCTTGTATTTTTGTTG
195 TTAAAATTTTTTCGAAAGGCGTTTTGGCCCGAAACTTGGTAGATGTGATCCTTGTATTTTTGTTG
12825081 GCATGCACAAAAAAATTCAGCTAAAAAGTCGACGTGTACAAGATTTTGTGACGATTTGAAAAAAG
260 GCATGCACAAAAAAATTCAGCTAAAAAGTCGACGTGTACAAGATTTTGTGACGATTTGAAAAAAG
12825146 TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
325 TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
12825211 AGGGGTTTGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
390 AGGGGTTTGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
12825276 CCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCTAATGCCACCGGT
455 CCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCTAATGCCACCGGT
12825341 CAGGTTCTTTGATGATGCTCCAGCGATGGCACCCCGACGAAGAAAAATGCGGCACCAACACATGC
520 CAGGTTCTTTGATGATGCTCCAGCGATGGCACCCCGACGAAGAAAAATGCGGCACCAACACATGC
12825406 CCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGACTGATTTTAGACTGGGAACGAACTCCG
585 CCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGACTGATTTTAGACTGGGAACGAACTCCG
12825471 TATGCCTAAGTCAGCCCACGAAATAAGCGTATGGGTGCTCAACCGGCCAGAGGGGCGAGATGCGC
650 TATGCCTAAGTCAGCCCACGAAATAAGCGTATGGGTGCTCAACCGGCCAGAGGGGCGAGATGCGC
12825536 AAGTCGGGGATCGGTCGAGTCCCCCTCTGTGTGCTGCCGATCCTGCTGGCACAACGGGTGGGCGG
715 AAGTCGGGGATCGGTCGAGTCCCCCTCTGTGTGCTGCCGATCCTGCTGGCACAACGGGTGGGCGG
12825601 GCGGGCATTACGCCGATTAGAGAGAT
780 GCGGGCATTACGCCGATTAGAGAGAT
12825627 GGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTCAGCACATCTTCATATTTCTGTG
1 GGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTCAGCACATCTTCATATTTCTGTG
12825692 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
12825757 CATGGCAAGACGACTCGTTTTCTGTTTTTCATGAATTTTGAAACTTTTTACGGTTCGGGTTCTTT
131 CATGGCAAGACGACTCGTTTTCTGTTTTTCATGAATTTTGAAACTTTTTACGGTTCGGGTTCTTT
12825822 TAAAATTTTTTCGAAAGGCGTTTTGGCCCGAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGG
196 TAAAATTTTTTCGAAAGGCGTTTTGGCCCGAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGG
12825887 CATGCACAAAAAAATTCAGCTAAAAAGTCGACGTGTACAAGATTTTGTGACGATTTGAAAAAAGT
261 CATGCACAAAAAAATTCAGCTAAAAAGTCGACGTGTACAAGATTTTGTGACGATTTGAAAAAAGT
12825952 GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
326 GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
12826017 GGGGTTTGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
391 GGGGTTTGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
12826082 CATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCTAATGCCACCGGTC
456 CATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCTAATGCCACCGGTC
12826147 AGGTTCTTTGATGATGCTCCAGCGATGGCACCCCGACGAAGAAAAATGCGGCACCAACACATGCC
521 AGGTTCTTTGATGATGCTCCAGCGATGGCACCCCGACGAAGAAAAATGCGGCACCAACACATGCC
* * * *
12826212 CGAGCCCAGCGTGTGCTGCCGTAACCCTTGGTCTGGA-TCGATTTTAGACTGGGAATGAACTCCG
586 CGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGACT-GATTTTAGACTGGGAACGAACTCCG
* *
12826276 TATGCCTATGTCAGCCCACGAAATGAGCGTATGGGTGCTCAACCGGCCAGAGGGGCGAGATGCGC
650 TATGCCTAAGTCAGCCCACGAAATAAGCGTATGGGTGCTCAACCGGCCAGAGGGGCGAGATGCGC
12826341 AAGTCGGGGATCGGTCGAGTCCCCCTCTGTGTGCTGCCGATCCTGCTGGCACAACGGGTGGGCGG
715 AAGTCGGGGATCGGTCGAGTCCCCCTCTGTGTGCTGCCGATCCTGCTGGCACAACGGGTGGGCGG
*
12826406 GCGGGCATTACGCCGGTTAGAGAGAT
780 GCGGGCATTACGCCGATTAGAGAGAT
12826432 GGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTCAGCACATCTTCATATTTCTGTG
1 GGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTCAGCACATCTTCATATTTCTGTG
*
12826497 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAG-TT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * * * * * * *
12826561 CATGGCAAGACAACTCATTTTCTATTTTTCACG-ATTGTCAAAATTTTTGCGATTCAGGATT-TT
131 CATGGCAAGACGACTCGTTTTCTGTTTTTCATGAATTTTGAAACTTTTTACGGTTC-GGGTTCTT
* ** * ** *
12826624 TTAAAATTTTTTC-AGAAGGAGTTTTGGCCAAAAACTTGATAGACATGATCTTTGTATTTTTGTT
195 TTAAAATTTTTTCGA-AAGGCGTTTTGGCCCGAAACTTGGTAGATGTGATCCTTGTATTTTTGTT
* * * *
12826688 GGCATACACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
259 GGCATGCACAAAAAAATTCAGCTAAAAAGTCGACGTGTACAAGATTTTGTGACGATTTGAAAAAA
* * * *
12826753 GTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTCAAATGCTTTTT
324 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * *
12826818 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGC
389 AA-GGGGTTTGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * *** * * * *
12826883 GCCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCAATCATTGAAAACCTAATGTCGCC
453 ACCCATCACACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGCCGGAACCCTAATGCCACC
* * * * *
12826947 AGTCA-G------G-T--T-CTCCAGCGATGGTACCCCGACAAAGAAAAATGTGACACCAACACA
517 GGTCAGGTTCTTTGATGATGCTCCAGCGATGGCACCCCGACGAAGAAAAATGCGGCACCAACACA
* * *
12827001 TGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTC
582 TGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTC
12827038 CTGTCCGATC
Statistics
Matches: 1340, Mismatches: 65, Indels: 24
0.94 0.05 0.02
Matches are distributed among these distances:
793 74 0.06
794 1 0.00
796 1 0.00
797 1 0.00
802 1 0.00
803 206 0.15
804 143 0.11
805 912 0.68
806 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (805 bp):
GGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTCAGCACATCTTCATATTTCTGTG
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTGTTTTTCATGAATTTTGAAACTTTTTACGGTTCGGGTTCTTT
TAAAATTTTTTCGAAAGGCGTTTTGGCCCGAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGG
CATGCACAAAAAAATTCAGCTAAAAAGTCGACGTGTACAAGATTTTGTGACGATTTGAAAAAAGT
GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
GGGGTTTGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCTAATGCCACCGGTC
AGGTTCTTTGATGATGCTCCAGCGATGGCACCCCGACGAAGAAAAATGCGGCACCAACACATGCC
CGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGACTGATTTTAGACTGGGAACGAACTCCGT
ATGCCTAAGTCAGCCCACGAAATAAGCGTATGGGTGCTCAACCGGCCAGAGGGGCGAGATGCGCA
AGTCGGGGATCGGTCGAGTCCCCCTCTGTGTGCTGCCGATCCTGCTGGCACAACGGGTGGGCGGG
CGGGCATTACGCCGATTAGAGAGAT
Found at i:12827098 original size:26 final size:26
Alignment explanation
Indices: 12827047--12827099 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12827037 CCTGTCCGAT
* *
12827047 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12827073 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12827099 C
1 C
12827100 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12828877 original size:26 final size:26
Alignment explanation
Indices: 12828848--12828898 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12828838 CTATCCGATC
*
12828848 TTAGATTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
12828874 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
12828899 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:12829785 original size:26 final size:26
Alignment explanation
Indices: 12829749--12829801 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12829739 CTGGTCTGAT
12829749 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12829775 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12829801 C
1 C
12829802 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12829938 original size:902 final size:902
Alignment explanation
Indices: 12826400--12835735 Score: 11209
Period size: 902 Copynumber: 10.4 Consensus size: 902
12826390 CACAACGGGT
* ** * *
12826400 GGGCGGGCGGGCATTACGCCGGTTAGAGAGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
**
12826465 GGTGGGTTTCA-GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
66 GGTGGGTTT-AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
12826529 TACAATGGTCCCTCAAGCCTTCACGTGAAG-TTCATGGCAAGACAACTCATTTTCTATTTTTCAC
130 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * * **
12826593 GATTGTCAAAA-TTTTTGCGATTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCAAAA
195 GATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
12826657 ACTTGATAGACATGATCTTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAACTCGAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
12826722 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
12826787 CAGCGAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
12826852 TAGGGGGCCAATATAAGGGCCAAGCACCAGCGCCCATCGCACATCATGTGCGCACACCCCCCGAC
455 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCG-G
* ** * * * * * *
12826917 CCCCCCAATCATTGAAAACCTAATGTCGCCAGTCAGGTTCT-C--C-A------G-CGATGGTAC
518 CCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGC
* * * *
12826971 CCCGACAAAGAAAAATGTGACACCAACACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGG
583 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
12827036 TCCT-GTCCGATCTTAGATTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGC
648 T-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * ** * * * * * *
12827100 CGAAGTCAACCCACGAAACAAGTGTGTTGTTGCTCAGTCGACCAGAGGGGTGGGATACGCAAGCC
712 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCC
** * * * * * * *
12827165 GGGGATCGACCGGGTCCCCCTCTGCTTGTTGC-CAATCCTGCTGCTGCAACCCTCAGTCCGGTCC
777 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTCGATCCTACTGCCGCAACCCTCAGTCTGGTCT
* * * *
12827229 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAACGGGCTGAC
842 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAC
* * * * * *
12827290 GGGCGGGCGGGCACTATGCCGACTAGAGGGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
12827355 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTTAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
12827420 ACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * **
12827485 ATTTTTAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTT-GTGAAGGAGTTTTGGCATCAA
196 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCCAA
* * *
12827549 ACTTGGTGGATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTTC-GCTAAAAACTCGA
260 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGA
* * *
12827613 AGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCTATTCCAGACACTTTAATGGCTACTG
324 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
12827678 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
389 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * ***
12827743 ATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA---TAAC--C
454 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGC
* ** * *
12827803 CCCCCGATCACCGGAACCCTAATGCCATCGGTCAGGTTCTTC-GACAATGCTCCTG-CGATGGTG
519 CCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG-CGATGCTCC-GACGATGGTG
* * * *
12827866 CCCCGACGAAGAAAAATGTGGCACCGAGACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCG
582 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * *
12827931 GTCCT-GTCCAATCTTAGATTGGGAATGAATTCCATATGCTTAGACTGGGAATGAACTTCGTATG
647 GT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
12827995 CCTAAGTAAACCCACGAAATGAGCGTACGGGTGCTTAGCCGGCCAGAGGGGCGGGATGTGCAAGC
711 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGC
* * * * * *
12828060 CGGGGATCGGTCGAGTCCCCCTCTGTGTGCTG-TCAATCTTACTTCCACAACCCTCAGT-TCGGT
776 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTCGATCCTACTGCCGCAACCCTCAGTCT-GGT
* * * * * **
12828123 CTGATCTAAGATTGGGAATGAACTCCGTTTGCCTAAGCCAATCGACGAAATGAGCGGGCGGGT
840 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAC
* ** * * * * *
12828186 GAGCCAGCGGGCACCACGTCGGCCAGAGAAACGGGATGTGCAAGCCGTGGATCAATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
12828251 GGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
12828316 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGGTTTCTATTTTTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
12828381 ATTTTCGAAAC-TTTTAGCAGTTCGGGATTTTTTAAAATTTTTTCGGAA-GACGTTTTGGCCCCA
196 ATTTTCAAAACTTTTTA-CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCA
*
12828444 AACTTGGTAGAC-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
259 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* ** *
12828508 AGTGTACAAGATTTTGTGACCATTTGACAAAAGCATCCCCATTTTAGACACTTTAATGGCTACTG
324 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
12828573 GCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGCA-TTCTCGAGGTTTGATGAGG
389 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG-AGTTCTCGAGGTTTGATGAGG
*
12828637 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCATAACCCCCC
453 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC---A-CCCCC
* * * * * *
12828702 CCGGCCCCCCGATCGCTGGAACCCCAATACCGTCGGTTAGGTTCTCCGGCGATGCTCCTG-CGAT
514 CCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCC-GACGAT
* ** * *
12828766 GGTGCCCAGGTGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACC
578 GGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * *
12828831 CTCAGTCCT-ATCCGATCTTAGATTGGGAATGAACTCCGTATGATTAGACTGGGAATGAACTCCG
643 CTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
12828895 TATGCCTAAGTCAAACCACGAAACGAGCGTGCGAGTGCTCAGTCGACCAGAGGGGC-AGGATGAG
707 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGA-GATGCG
* * * * ** *
12828959 CAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTG-GCAATCCTGTTGCTGCAACCCTCAGTC
771 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTCGATCCTACTGCCGCAACCCTCAGTC
* ** **** **
12829023 CGGTCCAATCTTAGACCAATAATGAACTCCGTATGCCTAAGCCAACCGATAAAACGAGCGGGCGG
836 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
*
12829088 AT
901 AC
* * * * * *
12829090 GGGTGGGCGGGCACTACGCCTGCTAGAGAGACGTGATGCGCAAGCTGTGGATCGATAGGGTAGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
12829155 GGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
12829220 ACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
12829285 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
196 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * *
12829350 CTTGGTAGACATGATCCTTGTATTTTTGTTGGTATGCACAAAACAATTCAGCTAAAAACTGGAAG
261 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
12829415 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGC
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
12829480 AGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
12829545 AAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATTTGTGCACCCCCCCGGCTC
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGC-C
* * * * *
12829610 GCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAGCCATGCTCCGATGATGGTGCCC
520 CCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCC
* * * * *
12829675 CGATGAAGAAAAATGCGACACCAACACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCAGTC
585 CGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*
12829740 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
650 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
12829805 AGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGAGCAAGTCGGG
715 AGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGG
* * * * * *
12829870 GATCGGCCTGGTCCCCCTCTCCGTGCTGCT-GATCCTACTACCGTAACCCTCGGTCTGGTCTGAT
780 GATCGGTCGGGTCCCCCTCTGCGTGCTGCTCGATCCTACTGCCGCAACCCTCAGTCTGGTCTGAT
* ** * * * *
12829934 CTTAGGCTAAGAATGAACTCCGTATACCTAAGACAATC-ATCGAAACGAGC---TGG-C
845 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAAACGAGCGGGCGGAC
* * * * * *
12829988 GGGCGGGCGGGCACTAAGCCAGCCAAAGAGTCGGGACGCGCAAGCCGTGGATCGATAGGATGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
12830053 GGTGGGTTTAGGCTCCTCTTCATATTCCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
12830118 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * *
12830183 AATTTT-GAAACTTTTTACGGTTCGAGATTTTTGAAAATTTTTTTGGAAGGAGTTTTAGCCCCAA
196 -ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* *
12830247 ACTTGGTAGACATGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
260 ACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
12830312 AGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTG
324 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
12830377 GCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
389 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
12830442 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCT
454 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC--CCCCCC-
* *** * * *
12830507 GGCCCCCCCAATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GATGATGCTCCGACGACG
516 GG-CCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG-CGATGCTCCGACGATG
** * * **
12830571 GTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGTATGTGCTGTTGCAACCC
579 GTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
*
12830636 TCGGTCT-G---G----T---C------TG-A-T-C-----C-TAGACAGGGAATGAACTCCGTA
644 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * *
12830675 TGCCTAAGTCAACCCACGAAACGAGCGTGC----G---AG--TGCCAGAGCGGCGGGATGCGCAA
709 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAA
* * * * ** * *
12830731 GCCGAGGATCGATCGGGTCCCCCCTCTACGTGCTG-TCGATCCTGCTATCACAACCCTCAATCAT
774 GCCGGGGATCGGTCGGGT-CCCCCTCTGCGTGCTGCTCGATCCTACTGCCGCAACCCTCAGTC-T
* * * * * * *
12830795 -GTCTGATATGAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAATGAGTGGAC-GA
837 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGA
12830858 GC
902 -C
* * * * * *
12830860 GGGCGGGCGGGCA-TGACGCCGGCCAGAGAGACGGGATGCGTAAGTCATGAATCAAGAGGGTGGT
1 GGGCGGGCGGGCACT-ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* **
12830924 AGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
65 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
12830989 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAG
130 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
12831054 GATTTTTAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTCTTGGCCCCAA
195 GATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * *
12831119 ACTTGGTAGACATGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTATAAACTCGAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
12831184 GTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGCTACTGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
12831249 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
12831314 TAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGA
455 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCCCCCCGG
* ** * *
12831379 CCACCCGATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCTCC-GATGATGCTCCGACGATGGTG
518 CCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG-CGATGCTCCGACGATGGTG
* * * *
12831443 CCCCGACGAAGAAAAATGTGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGTAAACCTCG
582 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
12831508 GTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATG-
647 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * ***** * * * *
12831572 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAAGC
712 CTAAGTCAACCCACGAA--ACG-A-GCGT-G-C-GGG--TG--CT-C--A-GCC---GGC----C
*** * * *
12831637 ATGAAACAAGTGTATGGGTGCTCAACCGGCCAAAGAGACGGGATACGCAAGCCGGGGATCCGTTG
755 A-G--AGGGGCG-A--GATGCGCAA---GCC-----G--GGGAT--------C--GG-T-C---G
* * * * * * *
12831702 GGTCCCCCTCTGCGTGCTG-TCAATCCTGCTACCACAACCTTCGGTCTGGTCTGATCTTAGATTG
789 GGTCCCCCTCTGCGTGCTGCTCGATCCTACTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTG
* * * *
12831766 GGAATGAACTCCGTATGCCTTAGCCAACCGACGAAACGAGTGGGTGGGC
854 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAC
* * * * *
12831815 GGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGTAAGTCGTGGATCGATAGGGTGGTT
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
12831880 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
12831945 ACAATGGTCCCTTAAGCCTTCACGTGAATTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** ** *
12832010 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGTGTTTTGGCCCCAAA
196 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * *
12832075 CTTGGTAGGCGTGATCAATT-TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAA
261 CTTGGTAGACGTGATC-CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
12832139 GTGTACATGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
12832204 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA-CAGGGG
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGG
*
12832268 ATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
454 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGG
** * * * *
12832333 CCCTTCGATCACCGGAACCCTAATGCCGTCGGTCAGGTTCTCTAACGATGCTCCGACGATGGTGC
518 CCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGC
* * * * *
12832398 CCTGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGA
583 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
12832463 CCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
648 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * **
12832528 TAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGTCGGCAAGAGGGGC-AGGATGCGTAAGTT
713 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGCC
* * * * * ** *
12832592 AGGGATCGATCGGGTCACCCTCTACGTGCTAC-CGATCCTACTGTTGAAACCCTC-GATCTGGTC
777 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTCGATCCTACTGCCGCAACCCTCAG-TCTGGTC
* * * * * * * *
12832655 TAATCTTAGATTGGGAATGAACTCCGTATGCCTGAGCAAACCGACAAAACAAACGGGCGGGC
841 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAC
** * * * * *
12832717 GGGCGGGTAGGTACTACGCCGGCTAGAGAGACCGGAAGCGCAAGCCGTGGATCGATAAGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
12832782 GGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCACTATTATGGCTTTTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
12832847 ACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * *
12832912 ATTTTCAAAACTTTTTAGGGTTCAGGATTTTTTGAAATTTTTTTGGAAGGAGTTTTGGGCCCAAA
196 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * *
12832977 CTTTGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAATTCAACTAAAAACTCGAAG
261 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
12833042 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGT
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
12833107 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
12833172 AGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACACCCCCC-GCC
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGGCC
* * *
12833236 CCTTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GACGATGGTCCGATGATGGTG-
520 CC-CCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG-CGATGCTCCGACGATGGTGC
* ** * * * * *
12833299 CTCGGTGAAGAAAAATGCGGCACTAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTCGA
583 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
12833364 T-TCGGTCTGATCATAGACTGGGAATGAACTCTGTATGGTTAGACTGGGAATGAACTCCGTATGC
648 TCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * *
12833428 CTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCC
712 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCC
* * * * * *
12833493 GGGGATCAGTCGGGTCCCCCTCTACATGCTGC-CGATCCTGCTGCCGCAACCCTCACTCCGGTCC
777 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTCGATCCTACTGCCGCAACCCTCAGTCTGGT-C
* * *
12833557 T-ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGA--------AA
841 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAC
* * * * **
12833610 GGCCGGGCGGGCACTCCGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGGC
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** * * *
12833675 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATTCCATTTTTATGGCTTGCAAATTGAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
12833740 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * * *
12833805 ATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCTCAAA
196 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
12833870 CTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTGAGCTAAAAACTCAAAG
261 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
12833935 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
12834000 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGAGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
12834065 AAGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCCCCCCGGC
* * * * * *
12834130 ACCCCCGATCGCCGGAACCCCAATGCCGCGGGTTAAGTTCTCC-GATGATGCTCCGGCGATGGTG
519 -CCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAG-CGATGCTCCGACGATGGTG
* * * * * * *
12834194 CCTCGGCGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGTAACCCTCG
582 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * *
12834259 GTCCGGTTCGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAGGC
647 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * ** * *
12834324 CCAAGTCAACCCACGGAACGAGTGTGCGGGCACTCA----GCC-GAGGGGTGAGATGCGCAAGCT
712 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCC
* ** * * * * * ***
12834384 GGGGATCGGTTGGGTCCCCCTCTATGTGCT-ATCGATCCTATTACCGTAACCCTCGGTCCAATCT
777 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTCGATCCTACTGCCGCAACCCTCAGTCTGGTCT
* * * * *
12834448 GATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCAACAAAACAAGC--G-GG-T
842 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAC
* * * *
12834505 GGGCGGGCGGGCACAATGCCTGCCAGAGAGACGGGATGCGCAAGCCGTGGACCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
12834570 GGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
12834635 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACC
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
12834700 ATTTTCAAAACTTTTTGC-GTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
196 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
12834764 CTTGGTAGACGTGATCCTTGTATTTTTTTTTG---GC-C---------C--C-----A----AAG
261 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
12834805 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGC
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
12834870 AGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
12834935 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACGCATCATGTGCGCACACCCCTCCCGG
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCCC-CCCGG
* * * * * **
12835000 CCCCTCCGATCACCGGAACCCGAATGCCGTCGGTCAGGTTCTCCGGTGATGCTTCGGTGATGGTG
518 CCCC-CCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTG
* * * *
12835065 CCCCGACGAAGAAAAATGCAGCACCAGCA-ATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCG
582 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* **
12835129 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGTGAATGAACTCCGTACAC
647 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * ** * * *
12835194 CTAAGTGAACCCATGGAATGAGCGTACGGGCGCTCAGCTAGCCAGAAGGGTGGGATGCGCAAGCC
712 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCC
* ** * * * *
12835259 GGGGATCAGTTAGGTCCCCCTCTGCGTGCTG-TCGATCCTACTGCTGCAACCCTCGGTCTGATCC
777 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTCGATCCTACTGCCGCAACCCTCAGTCTGGTCT
* * * * *
12835323 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCTAGCCGATGAAACGAGCGGGCGGGC
842 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAC
* * * * * * *
12835384 GGGCGAGTGGGCACTATGTCGGCCAGAGAGATGTGATGCGCAAGCCGTGGATCAATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * * * * **
12835449 GGTGCCAATGTTAGACTAGGAATGAACTCTTCATATTTCTACGTGCGAATGTTATTTTTATGGCT
66 GGTG----GGTT----TAGGCA--CA-TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * * *
12835514 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCTTGGCAAGACGACTCATTTTT
120 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * **
12835579 TATTTTTCATGATTTTCAAAACTTTCTGCGGTTTGGGATTTTTTAAAATTTTTTCAAAAGGAGTT
185 TATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
12835644 TTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
250 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
12835709 AAAACTTGAAGTGTACAAGATTTTGTG
315 AAAACTCGAAGTGTACAAGATTTTGTG
12835736 GGCACACCCC
Statistics
Matches: 7330, Mismatches: 883, Indels: 441
0.85 0.10 0.05
Matches are distributed among these distances:
867 33 0.00
868 77 0.01
869 120 0.02
870 312 0.04
871 310 0.04
872 247 0.03
873 3 0.00
874 4 0.00
875 115 0.02
876 50 0.01
877 3 0.00
878 2 0.00
879 61 0.01
880 1 0.00
882 1 0.00
883 4 0.00
884 1 0.00
885 34 0.00
886 3 0.00
887 5 0.00
888 3 0.00
889 4 0.00
890 268 0.04
891 229 0.03
892 274 0.04
893 465 0.06
894 93 0.01
895 495 0.07
896 660 0.09
897 2 0.00
898 257 0.04
899 221 0.03
900 2 0.00
901 287 0.04
902 1043 0.14
903 3 0.00
904 565 0.08
905 229 0.03
906 2 0.00
907 2 0.00
909 1 0.00
911 1 0.00
915 20 0.00
916 1 0.00
917 5 0.00
921 1 0.00
924 1 0.00
925 2 0.00
926 1 0.00
927 7 0.00
928 4 0.00
930 2 0.00
931 7 0.00
932 1 0.00
933 1 0.00
934 3 0.00
937 2 0.00
939 1 0.00
940 2 0.00
941 5 0.00
943 1 0.00
944 2 0.00
946 2 0.00
948 3 0.00
949 2 0.00
950 1 0.00
951 4 0.00
952 2 0.00
953 5 0.00
954 175 0.02
955 567 0.08
956 8 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (902 bp):
GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCCC
CCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCC
GACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGG
ATCGGTCGGGTCCCCCTCTGCGTGCTGCTCGATCCTACTGCCGCAACCCTCAGTCTGGTCTGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAC
Found at i:12831549 original size:26 final size:26
Alignment explanation
Indices: 12831520--12831624 Score: 192
Period size: 26 Copynumber: 4.0 Consensus size: 26
12831510 CCGGTCCAAT
12831520 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12831546 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12831572 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12831598 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
12831624 C
1 C
12831625 CTAAGTCAAA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12832510 original size:26 final size:26
Alignment explanation
Indices: 12832474--12832526 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12832464 CTGATCCGAT
12832474 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12832500 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12832526 C
1 C
12832527 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12833406 original size:26 final size:26
Alignment explanation
Indices: 12833377--12833426 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12833367 GGTCTGATCA
*
12833377 TAGACTGGGAATGAACTCTGTATGGT
1 TAGACTGGGAATGAACTCCGTATGGT
12833403 TAGACTGGGAATGAACTCCGTATG
1 TAGACTGGGAATGAACTCCGTATG
12833427 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGGT
Found at i:12834300 original size:26 final size:26
Alignment explanation
Indices: 12834271--12834320 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12834261 CCGGTTCGAT
*
12834271 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12834297 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
12834321 GGCCCAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12835170 original size:26 final size:26
Alignment explanation
Indices: 12835141--12835190 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12835131 CTGGTCCGAT
12835141 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12835167 CTTAGACTGTGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
12835191 CACCTAAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12835919 original size:26 final size:26
Alignment explanation
Indices: 12835890--12835942 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12835880 CCAATTTGAT
*
12835890 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
12835916 CTTAGAGTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
12835942 C
1 C
12835943 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:12836695 original size:26 final size:26
Alignment explanation
Indices: 12836666--12836717 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12836656 TGGTCCGATT
* *
12836666 TTAGACTGGTAATGCACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
12836692 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
12836718 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:12838138 original size:897 final size:897
Alignment explanation
Indices: 12836054--12838485 Score: 3477
Period size: 900 Copynumber: 2.7 Consensus size: 897
12836044 CTACTGCCAC
* * * *
12836054 GGATCGATA-AGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTGCCTGCCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
*
12836118 ATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
66 ATGGC-TTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** * * *
12836183 ATTTTCTATTTTTCATGATTTTCAAAACTTTCTGCGGTTT-GGATTTTTTAAAAATTTTTTCGGA
130 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTT-AAAATTTTTTCAGA
* * *
12836247 AGCAGTTATAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
194 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAT
* * * *
12836312 TCAGATAAAAACTCGAAGTCTACAAGATATTGTGACCAATTGAAAAAAGTGTCCCCATTTCAGAC
258 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
12836377 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
323 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
12836442 CGAGGTTTTATGAGGGATTGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGTACATCATG
388 C-AGGTTTGATGAGGGA-TAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
12836507 TGCG-ACACCCCTCGGGCCCTCCCGATCGTCGGAACA-CCAATGCCGCCAGTCAGGTTCTTCGGT
451 TGCGCACACCCC-CCGGCCC-CCCGATCGTCCGAAAACCCAATGCCGCCGGTCAGGTT-ATCGGT
* * *
12836570 GATGCTCCGGCGATGGTGCCTCGATGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCAT
513 GATGCTCCGACGATGGTGCCTCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* * ** * * * *
12836635 GTGCTGCCGCAACCCTCGGTCTGGTCCGATTTTAGACTGGTAATGCACTCCGTATGCTTAGACTG
578 GTGCTACCGCAACCCTCGATCTGGTTTGATCTTAGACTGGGAATG-ACTCCATATGCTTAGACTA
* * *
12836700 GGAATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCACTTAGCCGGCCAGAG
642 GGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCATACGGGCACTCAGCCGGCCAGAG
* * * * * * * *
12836765 GGGCGGGATGCGCAAGCTGGGGATCGGCCAGGTCCCTTTCTGTGTGCTGCCATTTCTGCTACCGC
707 GGGCAGGATGCGAAAGCTGGGGATCGACCAGGTCCCCTTCTGCGTACTGCCATTCCTGCTACCAC
** *
12836830 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
772 AACCCTCAATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
12836895 CAAACGGGCAGGTAGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGT
837 CAAACGAGCAGGTAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGAATGCGCAAGCCGT
* *
12836956 TGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* * *
12837021 ATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACCTGAAGTTTCATGACAAGACGACTC
66 ATGGCTT-TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * ** *
12837086 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTCGTTCGGGTTTTTTTTTAATTTTTTCAAAA
130 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCAGAA
*
12837151 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGGTTGGCATGCACAAAAACATT
195 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATT
*
12837216 CAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
259 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
12837281 CTTTAATGGACTACT-GTAG-AAACCTGTAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
324 CTTTAATGG-CTACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
12837344 TCAGGTTTGATGAAGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
387 TCAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
12837409 GCGCACACCCCCTGGCCCCCCGATC-TCCGAAAACCCAATGCCACCGGTCAGGTTATCAGGCGAT
452 GCGCACACCCCCCGGCCCCCCGATCGTCCGAAAACCCAATGCCGCCGGTCAGGTTATC-GGTGAT
* * * * * *
12837473 GCTCCTACGATGGTGCCCCGGTAAAGAAAAATACGGCACCAGCACATGCCCGTGACCAGCATGTG
516 GCTCCGACGATGGTGCCTCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
12837538 CTACCGTAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGATCTCCATATGCTTAGACTAGGA
581 CTACCGCAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGA-CTCCATATGCTTAGACTAGGA
* * * * *
12837603 ATGAACTTCGTTTGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGGCCAGAGGGG
645 ATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCATACGGGCACTCAGCCGGCCAGAGGGG
* *
12837668 CAGGATG-TAAAGC-GGGGATCGATCAGGTCCCCCTT-TGCGTACTGCCGA-TCCTGCTACCACA
710 CAGGATGCGAAAGCTGGGGATCGACCAGGT-CCCCTTCTGCGTACTGCC-ATTCCTGCTACCACA
* * ** *
12837729 CCCCTTAATCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
773 ACCCTCAATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
12837794 GAGCGAGCAGGTGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGAATGCGCAAGCCGT
838 AAACGAGCAGGTAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGAATGCGCAAGCCGT
12837854 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* *
12837919 ATGGCTTTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCG
66 ATGGCTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
12837984 TTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCAGAAG
131 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCAGAAG
*
12838049 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAATTTC
196 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTC
*
12838114 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACAC
260 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
12838179 CTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
325 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TC
* *
12838244 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCTCACATCATGTG
389 AGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
12838309 CGCACACCCCCCCGGGCCCCCGATCGT-CGGAACCCCAATGCCGCCGGTTAGGTTCTCCGATGAT
453 CGCACA-CCCCCCGGCCCCCCGATCGTCCGAAAACCCAATGCCGCCGGTCAGGTTAT-CGGTGAT
* * *
12838373 GCTCCGACGATGGTGCCTCGACGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTG
516 GCTCCGACGATGGTGCCTCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * *
12838438 CTACCGCAACCCTC-AGTCCAGTTTGATCTTTGGCTGGGAATGAACTCC
581 CTACCGCAACCCTCGA-TCTGGTTTGATCTTAGACTGGGAATG-ACTCC
12838486 GTATTCCTAA
Statistics
Matches: 1364, Mismatches: 144, Indels: 46
0.88 0.09 0.03
Matches are distributed among these distances:
896 6 0.00
897 279 0.20
898 237 0.17
899 71 0.05
900 342 0.25
901 57 0.04
902 42 0.03
903 317 0.23
904 13 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (897 bp):
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
ATGGCTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCAGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAG
GTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCCGATCGTCCGAAAACCCAATGCCGCCGGTCAGGTTATCGGTGATGCTCC
GACGATGGTGCCTCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
GCAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGACTCCATATGCTTAGACTAGGAATGAAC
TTCGTATGCCTAAGTCAACCCACAAAACGAGCATACGGGCACTCAGCCGGCCAGAGGGGCAGGAT
GCGAAAGCTGGGGATCGACCAGGTCCCCTTCTGCGTACTGCCATTCCTGCTACCACAACCCTCAA
TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAACGAGC
AGGTAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGAATGCGCAAGCCGT
Found at i:12839215 original size:26 final size:26
Alignment explanation
Indices: 12839177--12839258 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
12839167 CTGGTCCAAT
12839177 CTTAGA-TTGGGAATGAACTCCGTATG
1 CTTAGACTT-GGAATGAACTCCGTATG
*
12839203 CTTAGACTTGGAATTAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
12839229 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
12839255 CTTA
1 CTTA
12839259 AGTCAACTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 51 0.96
27 2 0.04
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:12840127 original size:26 final size:26
Alignment explanation
Indices: 12840091--12840143 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12840081 CTAGTCCAAT
12840091 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
12840117 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
12840143 C
1 C
12840144 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:12841563 original size:905 final size:900
Alignment explanation
Indices: 12838436--12841934 Score: 4403
Period size: 905 Copynumber: 3.9 Consensus size: 900
12838426 GCCCAGCATG
* * ** * * *
12838436 TGCTACCGCAACCCTCAGTCCAGTTTGATCTTTGGCTGGGAATGAACTCCGTATTCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
12838501 CTGACGAAATGAGC-A-GG-CAGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAGG
66 CCGATGAAATGAGCGATGGAC-GGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCACAAG
* *
12838563 CCATGGATCGATAGGGTGGTAGGTGGGTTTA-GCACATCTTCATATTTCCACGTGCCAATGCCAT
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * * * *
12838627 TTTTATGGCTTGAAAATTCATTCAATTGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACG
195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
* ** *
12838692 ACTCGTTTTCTATTTTTCATGATTTTGGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
260 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
12838757 AGAAGGAGTTTTGGCCCGAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
12838821 CAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTC
390 C-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
12838886 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTCTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
12838951 TTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
12839016 CATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCACAATGCCTTCGGTC-AGTTCTCCG
584 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAGTTCTCCG
* * * * ** * * * *
12839079 GCGATGCTCCGGTGATGGTGCACCAACGAAGAAAAATGCGATAGCACCACATGCCCAATCCCAGC
649 GCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * * *
12839144 ATCTGTTGCCGCAAACCCTCGGTCTG-GTCCAATCTTAGATTGGGAATGAACTCCGTATGCTTAG
713 ATGTGCTGCCGC-AACCCTCGATCTGAGTCCAATCTTAGACTGGGAATGAACTCCGTA----T-G
* * *
12839208 ACTTGGAATTAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCTTAAGTCAACTCACGAA
772 -C------TT-A----G-A--C-T-G----GGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
* * *
12839273 ACGAGCGTGCGGGTGCTCAGCTGGCCAGAAGGGTGGGATGCGCAAGTCGAGGATCGATCGGGTCC
816 ACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGATCGGGTCC
12839338 CCCTCTGTGTGCTT-CGATCC
881 CCCTCTGTGTG-TTCCGATCC
* * *
12839358 TACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
12839423 CCAATGAAACGAGC---GGACAAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGCTGCGA-AA
66 CCGATGAAATGAGCGATGGAC-GGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGC-ACAA
* * * * * * *
12839484 GCCGTGGATCGATAGGGTGGGAGGTGGGCTTAGACACATCTTCGTATTTCTGCATGCCAATGCCT
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * * *
12839549 TTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCATCACATGAAGTTTTAAGGCAAGAT
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
* * *
12839614 GACTCGTTTTCTATTTTTCACGACTTTTAAAACTTTTTGCGGTTCGGGATTTTTTTAAAATTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTT
* *
12839679 TCGGAAGGATTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACATA
323 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA-A
* * *
12839744 AAA-ATTCAGCTAAAAAATC-AATATGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCAT
387 AAACATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
12839807 TTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
451 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
12839872 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
516 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** * *
12839937 CATCATGTGCGCACACCCCCCAGCCATCCCAATCGTCGGAACCCCAATGCCGTCGGTCAAGTTCT
581 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAGTTCT
*
12840002 -C--CG--G-T----GATGATGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
646 CCGGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * * *
12840057 GCATGTGTTGCCGCAACCCTTGGTCT-AGTCCAATCTTAGACTGGGAATGAAATCCGTATGCTTA
711 GCATGTGCTGCCGCAACCCTCGATCTGAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
12840121 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGTCGGC
776 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGC
* * * * * * * * *
12840186 CAAAGGGGCGGGATGCACAAGCCGGGGGTCGGTTGGGTCCCCCTTTGTGTGCTACCGATCC
841 CAGAGGGGTGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTG-TTCCGATCC
* * * *
12840247 TGCTGCTGCAACCCTGGGTCCGGTCCGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
12840312 TCGATGAAACGAGCAGGCAGGTGAGCCGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGC
66 CCGATGAAATGAGC--G-A--TG-GACGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGC
* * *
12840377 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGCCACATCTTCATATTTCTACGTGCCAAT
125 ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
* *
12840442 GCCATTTTTAAGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACATGAAGTTTCATGGCA
190 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCA
* * * * * *
12840507 AGGCGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTTGGGATTTTTTAAAATT
255 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * *
12840572 TTTTTGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTGTTTTTGTTGGCATGCAC
320 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
12840637 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATATGAAAAAAGTGTCCCCA
385 AAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
12840702 TTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTG
450 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
12840767 TGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGT
515 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * **
12840832 ACTTCATGTGTGCACACTCCCCCTGGCCCCCCCGATCGCCAGAACCCCAATGCCGTCGGTCCGGT
580 ACATCATGTGCGCACAC-CCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAGT
* * * * *
12840897 TCTCCGGTGATGCTCCAGCGATGGTGCCCCGGCAAAGAAAAATACAGCACCAGCACATGCTCGAG
643 TCTCCGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * * * * ** *
12840962 CCCAGCATGTGCCGCTGCAACCCTCGATCTGA-TCTAATCTTGGACTAGGAATGAACTTTGCATG
707 CCCAGCATGTGCTGCCGCAACCCTCGATCTGAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * ** *
12841026 CTTAGACTGGGAATGAACTTTGTTTGCCTAAGTCGACCCACAAAAGGAGCATACGGGCACTCAAC
772 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* *
12841091 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGTTGCCGATCC
837 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGTT-CCGATCC
* ** * * * *
12841156 TGCTACCGTAACCCTCAATTCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCCA
1 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
12841221 CCGGTGAAATGAGCGATCGGACGGATGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
66 CCGATGAAATGAGCGAT-GGACGG-CGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCACAA
*
12841286 GCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * *
12841351 TTTTTATGGCTTGCAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
* *
12841416 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAAATTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTT
** * * * **
12841481 TCGGAAGGAGTTTTGGCAACAAACCTGGCAGACATGATCCTTGTATTTTTGTTGGTGTGCACAAA
323 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
** *
12841546 AACATTCAAAT-AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * * *
12841610 TAGACACTTTAATGGCTACTGGCAGCAAA-CTGTAAGATCTCAAATTCTCTTTAAGTGTGTTTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
12841674 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * **
12841739 TCATATGCGAACAGCCCCCCCGCCCCGCCCCCCCGATCACTGGAACCCCAATGCCACCGGTCAAG
583 TCATGTGCGCACA--CCCCCCG----GCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAG
* * *
12841804 TTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGA
642 TTCTCCGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
* * *
12841869 GCCCAGCATGTGCTGCTGTAACCCTCGGTCTG-GTCCAATCTTAGACTGGGAATGAACTCCGTAT
706 GCCCAGCATGTGCTGCCGCAACCCTCGATCTGAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
12841933 GC
771 GC
12841935 CTAAGTCAAC
Statistics
Matches: 2247, Mismatches: 281, Indels: 112
0.85 0.11 0.04
Matches are distributed among these distances:
888 96 0.04
889 76 0.03
892 1 0.00
893 1 0.00
894 1 0.00
895 4 0.00
896 266 0.12
897 202 0.09
898 38 0.02
899 1 0.00
901 2 0.00
902 2 0.00
903 1 0.00
904 107 0.05
905 291 0.13
906 75 0.03
907 2 0.00
908 145 0.06
909 261 0.12
910 2 0.00
914 40 0.02
915 53 0.02
920 1 0.00
921 3 0.00
922 135 0.06
923 129 0.06
924 272 0.12
925 30 0.01
926 10 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAATGAGCGATGGACGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCACAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGGC
GATGCTCCGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGATCTGAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
GGGTGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGTTCCGATCC
Found at i:12843093 original size:76 final size:77
Alignment explanation
Indices: 12842973--12843117 Score: 247
Period size: 76 Copynumber: 1.9 Consensus size: 77
12842963 TTACGATTCT
* * *
12842973 GGATTTTTTAGAATTTTTTTCGGAAGGCGTTTGGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
1 GGATTTTTTAGAAATTTTTTCAGAAGGAGTTTGGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
12843038 TTTTATGGTTCG
66 TTTTATGGTTCG
*
12843050 GGATTTTTTA-AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
1 GGATTTTTTAGAAATTTTTTCAGAAGGAGTTTGGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
12843114 TTTT
66 TTTT
12843118 GTCGGCATGC
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
76 54 0.84
77 10 0.16
ACGTcount: A:0.21, C:0.14, G:0.23, T:0.42
Consensus pattern (77 bp):
GGATTTTTTAGAAATTTTTTCAGAAGGAGTTTGGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTATGGTTCG
Found at i:12845765 original size:877 final size:874
Alignment explanation
Indices: 12843037--12847051 Score: 4796
Period size: 877 Copynumber: 4.6 Consensus size: 874
12843027 GATCCTTGTA
* *
12843037 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
12843102 TGATCCTTGTATTTTTGTCGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
12843167 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAACAAGCCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
12843232 AAAATCTCAAATGCTCTTTAA-GGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAAT
196 AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
12843296 ATAAGGGCCAAGTACCAACACCCATCACACAACATGTGCGCACACCCCCCTCGGCCCCCCGATCA
261 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCT-GGCCCCCCGATCG
* * * *
12843361 TCGGAACCCCAATACCGCCGGTCAGGTTCT-C--TGA---C-GATG--GTGCCCCAAGGAAGAAA
324 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATCTCTGATGATGTGCCCCGACGAAGAAA
*
12843417 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACCAACCTCGATCCAATCCGATCT
389 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA-CAACC-C--T-C-A----ATC-
*
12843482 TAGACTGGGAATCAACTCCGCATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAC
443 T--A---GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * * * *
12843547 CAAATGAGCGTGCGGGCACTCAGCCGGCCACAGGGACGGGGTGCTCAAGCCGAGGCTCGATCGGG
494 GAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGG
** * * * * * * * *
12843612 TCCTTTTTTGCGTGTTGCCGATCCTGCTATCGCAACCCTCAGTTTGGTCCAATCATAGACTGGGA
559 TCCCCTTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTAGTCTAATCTTAGACTGGGA
* * *
12843677 ATGAACTCC-TATGCGTAAGCCAACCGACAAAACGAGCGGGCGGGATGGCG-GGCA-GGCACTAC
624 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-TGG-GAGGGAGGGCACTAC
* * * * * *
12843739 GTCGGTCGGAGAGACGGGATGCACAAGCCGTGGATCAATAGGGTGGTCGGTGGGTTTAGGCACAT
687 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
12843804 CTTCATA-TTTTGCATGCCAATGCCATTTCTTTATGGCTTGTAAATTCATACATGGTCCCTT-AG
752 CTTCATATTTTTGCATGCCAATGCCA-TT-TTTATGGCTTGTAAATTCATACATGGTCCCTTAAG
* * **
12843867 CCTTCACGTGAAGTTTCATGGCAAGATGA-TCGTTTTCTATTTTTCAACGATTTTGGAAAC
815 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCCACGATTTTTAAAAC
* * *
12843927 -TTTTATGGTTCGGGATTTTTTAGAATTTTTT-GGAAGGCGTTTTGGCCCCAAACTTGGTAGACG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
12843990 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
12844055 TTGTGACCATTTGAAAAAAATGTCCCCATTCCAGACACTTTAATTGG-TACTGGCAGCAAACCTG
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-TGGCTACTGGCAGCAAACCTG
* *
12844119 TAAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATACGGGGCCA
195 T-AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
12844184 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATTTGCGCACACCGCCCTTGGCCTCCCCGA
259 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC-CCC-TGGCC-CCCCGA
* * *
12844249 TCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTTCGACGATGCTC-CAGTGATGGTGCCCCGACG
321 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT-CTCTGA-TGAT-GTGCCCCGACG
* * ** * *
12844313 AAGAAAAATGTGGCACCAGCACATTCAAGAGCCCAGCATGTGCTGCCACAACCCTCAGTC-CGGT
383 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAATCTAGGT
* * * * **
12844377 CCGATCTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGC
448 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCAC
*
12844442 TCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGT-CCC--CT---T-CTG-C
513 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCTTCTACGTGCTGCC
* * * * * * **
12844499 -A---TGCTACTGTAACCCTTCA-TCTATTCTGATCTTAGACTGGGAATGGATTGTGTATGCCTA
578 GATCCTGCTACCGCAACCC-TCAGTCTAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * * *
12844559 AGCCAAACCGACGAAACGAACGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAAAGATGGGA
642 AGCC-AACCGACGAAACGAGCGGGCGGGTGGGAGGGAGGGCACTACGCCGGCCAGAGAGACGGGA
* * * * **
12844624 TGCGCAAGCCGTGGATCGATAAGGCGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGTGTGCC
706 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCC
* * *
12844689 AATGTCATTTTTATGGCTTGTAAATTCATACTATGGTCCCTTAATCCTTCACGTGAAGTTTCATA
771 AATGCCATTTTTATGGCTTGTAAATTCATAC-ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * *
12844754 GCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAAC
835 GCAAGACGACTCGTTTTCTATTTTCCACGATTTTTAAAAC
12844794 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
12844859 TGATACTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
12844924 TTGTGACCATTTGAAAAAATTGTGCCCATTTCATACACTTTAATGGCTACTGGCCGCAAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
12844989 AAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
196 AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
12845054 ATAATGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCTGGCTCCTCCGATCGC
261 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGC-CCCCCGATCGT
* * *
12845119 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATCCTCTGATGATGTTGCCCCGACAAAGAA
325 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT-CTCTGATGATG-TGCCCCGACGAAGAA
*
12845184 AAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAATCT-GGTCTGAT
388 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAATCTAGGTCTGAT
* * **
12845248 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGACCACTCAGC
453 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
12845313 TGGCCAGAGGGGCGGGTTGTGCAAGTCAGGGATCGATCGAGTCCCCTTCTACGTGCTGTCGATCC
518 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCTTCTACGTGCTGCCGATCC
* * * * *
12845378 TGCTACCGTAACCCTCAGTCTGGTCTAATCTTAGACTTGGAATGAACTCCATATGTCTAAGCCAA
583 TGCTACCGCAACCCTCAGTCTAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
12845443 CCGACGAAACGAGCGGGCGGGTGGGAGGGAGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
648 CCGACGAAACGAGCGGGCGGGTGGGAGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
12845508 GCCGTGGATCGATA-GGTGGTAGGTGGGTTTGGGTACATCTTCATATTTTTTGCATGCCAATGCC
713 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTTTGCATGCCAATGCC
* * *
12845572 ATTTTTATGGCTTGTAAATTCATATAGTAGTCCCTTAAGCCTTCACGTGAAGATTCATGGCAAGA
777 ATTTTTATGGCTTGTAAATTCATACA-TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
12845637 CGACTTGTTTTCTATTTTCCACGATTTTTAAAAA
841 CGACTCGTTTTCTATTTTCCACGATTTTTAAAAC
* * * * *
12845671 TTTTTGCGGTTTGAGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCACCAAACTTGGTTA-AC
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG-TAGAC
* * *
12845735 GTGATCCTTTTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
65 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
12845800 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTG
130 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * * *
12845865 TAAAATCTCAAAAGCACTTTAAAGGGGTGTGAGTTCTTGAGCTTTTGATGAGGGATAGGGGGCCA
195 TAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAG-GTTTGATGAGGGATAGGGGGCCA
*
12845930 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGAT-
259 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCTGGCCCCCCGATC
* *
12845994 GTCTGAACCCCAATGCCGGCGGTCAGGTTCTCCG--G-----TGATG--GTGCCCCGACGAAGAA
323 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATCTCTGATGATGTGCCCCGACGAAGAA
* * * * **
12846050 AAATGTGGCACGACCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCGATCCAGTCCGATC
388 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA-CC-C--T-CA-----A--
*
12846115 TTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTA
441 -T---CTAGG--T---C-T-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * ** * * * *
12846180 TGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCG-GCCG
493 CGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGG
* * * * * * * * * *
12846244 GTCCCCCTCCACGTGCTACCAATCCTGCTGCCACAACCCTCGGTCCAGTCTGATCTTATACTGGG
558 GTCCCCTTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTAGTCTAATCTTAGACTGGG
* * * * * *
12846309 AATGAACTCCGTATGCCTCAGCCAACCGATGAAACGATCAGGC-----GGACGGGCGGGTACTAC
623 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGA-GGGAGGGCACTAC
* * * *
12846369 GCCGGCCAGATAGATGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACAT
687 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
12846434 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGC
752 CTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC-ATGGTCCCTTAAGC
* *
12846499 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-AGTTTTCAAAAC
816 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCACGA-TTTTTAAAAC
* * * *
12846558 TTTTTATGGTTCGGGATTTTTTACACTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
1 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
12846623 TGATCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
12846688 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
12846753 AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAAT
196 AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
**
12846818 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTCCGGCCCCCCCGATC
261 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCT--GG-CCCCCCGATC
* * * * *
12846883 GCCGGAACCTCAATGCCGCCAGTCAGGTTCTCTGACGATGCTCCT-ACGATGGTGCCCCGACGAA
323 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT-CT-CTGATGAT-GTGCCCCGACGAA
* * * ** * *
12846947 -AAAAAGTACGGCTCCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGT-TCGGTC
385 GAAAAA-TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAATCTAGGTC
* * *
12847010 CGATCTTAGACTGGAAATGAACTCCGTATGCTTAAGTCAACC
449 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
12847052 AATGGAACGA
Statistics
Matches: 2707, Mismatches: 319, Indels: 214
0.84 0.10 0.07
Matches are distributed among these distances:
864 34 0.01
865 41 0.02
866 369 0.14
867 71 0.03
868 146 0.05
869 158 0.06
870 2 0.00
871 2 0.00
872 1 0.00
873 4 0.00
874 37 0.01
875 5 0.00
876 121 0.04
877 421 0.16
878 125 0.05
879 9 0.00
880 1 0.00
881 1 0.00
882 2 0.00
883 6 0.00
885 8 0.00
886 71 0.03
887 364 0.13
888 190 0.07
889 84 0.03
890 88 0.03
891 129 0.05
892 88 0.03
894 2 0.00
895 2 0.00
896 2 0.00
897 3 0.00
898 5 0.00
899 9 0.00
900 49 0.02
901 5 0.00
902 52 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (874 bp):
TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGCCCCCCGATCGTC
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATCTCTGATGATGTGCCCCGACGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAATCTAGGTCTGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGG
CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCTTCTACGTGCTGCCGATCCTGC
TACCGCAACCCTCAGTCTAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGTGGGAGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTCCACGATTTTTAAAAC
Found at i:12846152 original size:26 final size:26
Alignment explanation
Indices: 12846114--12846166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12846104 CCAGTCCGAT
*
12846114 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12846140 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12846166 C
1 C
12846167 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12848576 original size:26 final size:26
Alignment explanation
Indices: 12848540--12848595 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12848530 CCGGTCCGAT
*
12848540 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12848566 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12848592 CTTA
1 CTTA
12848596 AGTCAAACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12848866 original size:159 final size:159
Alignment explanation
Indices: 12848566--12848942 Score: 463
Period size: 159 Copynumber: 2.4 Consensus size: 159
12848556 ACTTCGTATG
* * **
12848566 CTTAGACTGGGAATGAACTCCGTATG-CTTAAGTCAAACCACGAAACGAGCATGCGGGTGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTT-AGTCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * ** * * *
12848630 CCGGCCAGAGGGGCGGGATGCTCAAGCTAGGGATCGGTCGGGTCCCCCTCTGCGGGTTGCCGATC
65 CCGGCCAGAGGGGCGGGATACGCAAGCGAGGGATCGACCGGGTCCCCCTCTGCAGGCTACCGATC
12848695 CTGCTACCGTAACCCTTG-GTCCGGTCTGAT
130 CTGCTACCGTAACCC-TGAGTCCGGTCTGAT
* ** *
12848725 CTTATACTGGGAATGAACTCTATATGCCTTAGTCAACCCACGAAATGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* *
12848790 CGGCCAGAGGGGCGGGTTACGCAAGTCGA-GGATCGACCGGGTCCCCCTCTGCATGCTACCGATC
66 CGGCCAGAGGGGCGGGATACGCAAG-CGAGGGATCGACCGGGTCCCCCTCTGCAGGCTACCGATC
* * * *
12848854 CTGCTGCTGTAACTCTGAGTTCGGTCTGAT
130 CTGCTACCGTAACCCTGAGTCCGGTCTGAT
* * * * *
12848884 CTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGCA
12848943 GGCGGGCACT
Statistics
Matches: 184, Mismatches: 31, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
158 2 0.01
159 177 0.96
160 5 0.03
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
CGGCCAGAGGGGCGGGATACGCAAGCGAGGGATCGACCGGGTCCCCCTCTGCAGGCTACCGATCC
TGCTACCGTAACCCTGAGTCCGGTCTGAT
Found at i:12849633 original size:26 final size:26
Alignment explanation
Indices: 12849597--12849649 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12849587 CCAATCTGAT
*
12849597 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
12849623 CTTAGATTGGGAACGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
12849649 C
1 C
12849650 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:12850530 original size:26 final size:26
Alignment explanation
Indices: 12850494--12850546 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12850484 CCGGTCTGAT
* *
12850494 CTTAGACTGGGAGTGAACACTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
12850520 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
12850546 C
1 C
12850547 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:12852632 original size:26 final size:26
Alignment explanation
Indices: 12852603--12852654 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12852593 TCTGGTCCGA
*
12852603 TCTTAGATTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
12852629 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
12852655 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:12854799 original size:26 final size:26
Alignment explanation
Indices: 12854763--12854813 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
12854753 TGACTTAGAT
12854763 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
12854789 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12854814 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:12856076 original size:892 final size:883
Alignment explanation
Indices: 12853945--12858741 Score: 5059
Period size: 867 Copynumber: 5.5 Consensus size: 883
12853935 GTTGGCTTAG
* **
12853945 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGGCAGCACATGCCGGG
1 GCAT-CGGAGTTCATTCCCAGTCT-AGATCGGACC-GA--GA-GGTTGCGGCAGCACATGCTAGG
* * *
12854010 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCACCGGAGA
60 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT--C--G-GCAT---CGGAGA
* * * ** * * * *
12854075 ACCTGACTGACGACATTGGATTTCTCTGACAATC--GGGGC-GAGGGTTTGAGCACATGATGTGC
117 ACCTGACCGGCGGCATTGGGGTTC-C-GACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGC
* * *
12854137 GAT-AGTGCTGGTACTT-G-CC--ATA--AG-CCCCTAT-CCT-A-CAAACCTCGAGAACGCA-A
180 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * * *
12854190 ACCCCTT-CA-TGCATTTGAGATTTT-CA-G-TTGCTGTC-G-ATG-CATTGAAGTGTCTGACAT
245 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-GCCATTAAAGTGTCTGAAAT
* *
12854247 --AGACA--TTTTTC-AATGGTCAC-AAATCTTGTACACTT-GA--TTTTAGCTG-A-TATTTTG
309 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
12854301 TGCATGCCAACAAAAATGCTAA-GATCA-GTCTACCAAGTTTGTGGCCAAAAATCTTTTCAAAAA
374 TGCATGCCAACAAAAATAC-AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * * *
12854364 AATTTT---AAAT--GGAA-CGCAAAAAGTTTCGAAAATCGT-ATAAA-AG--AACGAGTC--GT
438 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
* * * *
12854417 TGCCATGAAATTTCAACAGTG-A-GC-T-A-TG-CC--TGTATGTGCATTTACAAG----ACAAA
503 TGCCATGAAACTTC-AC-GTGAAGGCTTAAGGGACCATTGTA--TGAATTTACAAGCCATAAAAA
* *
12854470 TGGCATT-GCA-GCAG-AA-ATGAA-ATGTGCCTAAGGCCCA-CTACCACCCTATCGATCCACGG
564 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA-ACCCACCTACCACCCTATCGATCCACGG
** * * * *
12854529 CTTGCGCATCCTATCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGTCTGCCCGCTCGTTTCGTCG
628 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCG-CCGACCGCCCGCTCGTTTCGTCG
* * * ** *
12854594 GTTGGCTTA-GCATACGAAGTTCATTACCAGTCTGTGATTGGACCAGACCGTGGGTTGCAGCAGC
692 GTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGC
* * * * * * * *
12854658 AAGACTGGCAGCATGTAGAGGGGGACCCGGCCAATCTCCGGCTTGCGCATACCGCCCCTC-AGCC
757 AGGAC-GACAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
**
12854722 GG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGATATACGGAGTTCATTCCCAGTCTA
820 GGCCTGAGCGCCCGCACGCTCGTTTC-TGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTA
12854786 A
883 A
12854787 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTAGG
1 GCAT-CGGAGTTCATTCCCAGTCT-AGATCGGACC-GA--GA-GGTTGCGGCAGCACATGCTAGG
* *
12854852 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTGACTGGGGCACCATCGCCGGAGCATCGTCGTAGA
60 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT---C-G-GCATCG--G-AGA
* * * ** *
12854917 ACCTGACTGACGGCATTGGGGTTCCGATGATTAGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
117 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC-GGGGGGTGTGCGCACATGATGTGCG
*
12854982 ATGGGTGCTGGTACTTGG-CCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
181 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
12855046 CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
246 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12855111 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTG
311 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
12855176 CATGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
376 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** * * * *
12855241 TTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
441 TTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
*
12855306 CATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAAATGGCATT
506 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
12855370 GGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGGTTGCGCA
571 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * ** * *
12855435 TCCCATCTCTCTGGTCGGA-GTAGTATCTGCCCTTCCGACCGCCAGCTCGTTTCGTCGGTTGGCT
636 TCCCGTCTCTCTGG-CCGACGTAGTGCCTGCCC-GCCGACCGCCCGCTCGTTTCGTCGGTTGGCT
* *
12855499 TAGGCATACGGAGTTCATTCCCATTCTAAGATTGGA-CATGACCGAGGGTTACGGCAGCAGGATC
699 TAGGCATACGGAGTTCATTCCCATTCTAAGATTGGACCA-GACCGAGGGTTGCAGCAGCAGGA-C
* *
12855563 GACAGCACGCAGAGGGGGACTCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCAAC
762 GACAGCACGCAGAGGGGGAC-CGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC--C
* * * ** * * * *
12855628 AGGATCGGCAACACCCTTGTTTCATTGGTTGACTTAGGCATA-GGAGTTCATTGCTAGTCTAA
824 -TGAGCGCCCGCACGCTCGTTTC-TGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
* *
12855690 GCATGCGGAGTTCATTCCTAGTCTGAGATCGGACCGGATTGAGTGTTGCGGTAGCACATGCTAGG
1 GCAT-CGGAGTTCATTCCCAGTCT-AGATCGGACC-GA--GAG-GTTGCGGCAGCACATGCTAGG
* ** *
12855755 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCAAGGCACCATC-GC-T-GGAGAACCTGACT
60 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGGCATCGGAGAACCTGACC
*
12855817 GGCGGCATTGGGGTTCCGACAATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
125 GGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
12855882 GGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAA
190 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
12855947 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGT-TCCTGAAATGGGAACACTT
255 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTT
* * *
12856011 TTTTCAAATGGTCACAAAATCTTGTACACTTTGA-TTTTGTAGCTGTATTTTTTTGCGCATGCCA
319 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT-TAGCTGAATTTTTTTGTGCATGCCA
* *
12856075 ACAAAAATACAAGGATCACGTGTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAA
383 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* *
12856140 AATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCATGAAA
448 AATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
*
12856205 CTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGT
513 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * *
12856270 AGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCACATCCCGTC
578 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * ** *
12856335 TCTCTGGCCGACGTAGTGCCCGCCCGCCGGCCCGCCCACTCGTTTCATTAGTTGCCTTAGGCATA
643 TCTCTGGCCGACGTAGTGCCTGCCCGCC-GACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * *
12856400 CAGAGTTCATTCCCATTCTAAGATTAGACCAGACCGAGGGTT----------G-CGACAGCACTC
707 CGGAGTTCATTCCCATTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCAGGACGACAGCACGC
* * * * *
12856454 AGAGGGGGACCGGACCGACCCCCGACTTGAGCATCCCGCCCCTCTGGTC-ACCTGAGCGCCCGCA
772 AGAGGGGGACCGG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCCTGAGCGCCCGCA
* *
12856518 CGCTTGTTTCTTGGGTTGACTTATGCATACGGAGTTCATTCC---C--A
836 CGCTCGTTTC-TGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAA
** *
12856562 --ATCTAAG---A-T-----T-T-GATCGGACCGAG-GGTTGCGGCAGCACATGCTGGGCTCGGT
1 GCATCGGAGTTCATTCCCAGTCTAGATCGGACCGAGAGGTTGCGGCAGCACATGCTAGGCTCGG-
*
12856613 G-GTGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
65 GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA---TC-G-GCA---TCGGAGAACCTG
* * * **
12856677 ACCAGTGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGTTTGTGCGCACATGATGTATGAT
122 ACCGGCGGCATTGGGGTTCCGACGATCG-GGGGG-CGGGGGG--TGTGCGCACATGATGTGCGAT
*
12856742 GGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
183 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
12856807 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTTGCCATTAAAGTGTTTGAAATGGGG
248 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
12856872 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCA
313 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
12856937 TGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
378 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * **
12857002 TAAAAAATCCCAAACTGCAAAAGGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCA
443 TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
* *
12857067 TGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCAT-AAAATGGCATTGG
508 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
12857131 CACATAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
573 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
12857196 CCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCCACCCACCCGCTCGTTTCGTCGGTTGGCTTAG
638 CCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCGA-CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** *
12857261 GCATACGGAGTTCATTCCCATTCTAAGATTGGACCAGACCAAGGGTTGCCTCAGCAGGACCGGCA
702 GCATACGGAGTTCATTCCCATTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCAGGA-CGACA
* * * * *
12857326 GCACGCAGACGGGAACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTC-GCCTGAGCG
766 GCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCCTGAGCG
* *
12857390 CCCACACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 CCCGCACGCTCGTTTC-TGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
*
12857446 G-A-C-----TCGA----C---C---A---GACTGAG-GGTTGCGGCAGCACATGCT-GGTCTCG
1 GCATCGGAGTTC-ATTCCCAGTCTAGATCGGACCGAGAGGTTGCGGCAGCACATGCTAGG-CTCG
* * **
12857489 GGCATGTGTTGGTGCCGTATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCACCGGAGAACCT
64 GGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA---TC-G-GCAT---CGGAGAACCT
* * * *
12857553 AACCGGCGGCATTGGCGTTCCAACGATCGGGCGGCCGGGGGGTTTGTGCGCACATGATGTGCGAT
121 GACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCGGGGGG--TGTGCGCACATGATGTGCGAT
* * *
12857618 GGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATACCTCATCAAACCTCGATAACTCACACCC
183 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * *
12857683 CCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTTGCCATTAAAGTGTTTGGAATGGGG
248 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
12857748 ACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
313 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
12857813 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAATCCATCCCAAAAAATT
378 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATT
* ** * * * *
12857878 TTGAAAAATCAAAAACTGCAAAAAGTTTCGAATATCATGAAAAATAGAAAACGAGTCGTCTTGCC
442 TTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
*
12857943 ATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTG
507 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
12858008 GCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
572 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
12858073 CCCGTCTCTCTGGCCGACATA--G--TGCCC-AC--CCGCCCGCTCATTTCGTCGATTGGCTTAG
637 CCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCGACCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * ***
12858131 GCAAACGGAGTTCATTCCCAGTCCAAGATCAGACCGGATTAAGGGTTGCAGCAGCAGGATC-AGC
702 GCATACGGAGTTCATTCCCATTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCAGGA-CGA-C
* * * *
12858195 AGCACGCAGAGGGGGACCTGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGTC-GCCTGAGC
765 AGCACGCAGAGGGGGACC-GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCCTGAGC
* *
12858259 GCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
829 GCCCGCACGCTCGTTTC-TGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
* *
12858316 G-A-C-----TCGA----C---C---A---GACCGAG-GGTTGCGGCAGCACATGCTGGGCTCGA
1 GCATCGGAGTTC-ATTCCCAGTCTAGATCGGACCGAGAGGTTGCGGCAGCACATGCTAGGCTCGG
** * * **
12858360 GCATGTAATGGTGCTGCATTTTTATTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTG
65 GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT---C-G-GCAT---CGGAGAACCTG
* * * *
12858425 ACCAGTGGCATTGGGGTTCCGTCGATCAGGGGGGCCGGGGGGGTGTCCGCACATGATGTGCGATG
122 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGATG
*
12858490 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
184 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
12858555 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGT-TCCTGAAATGGGA
249 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGG
* * * **
12858619 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTGTAGCTGTATTTTTTTACGCA
313 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
12858684 TGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
378 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
12858742 CCTCGAGATG
Statistics
Matches: 3443, Mismatches: 359, Indels: 278
0.84 0.09 0.07
Matches are distributed among these distances:
839 2 0.00
840 4 0.00
841 2 0.00
842 137 0.04
843 1 0.00
844 23 0.01
845 12 0.00
846 3 0.00
848 3 0.00
850 1 0.00
851 7 0.00
852 60 0.02
853 3 0.00
854 17 0.00
855 9 0.00
856 3 0.00
857 22 0.01
858 4 0.00
859 2 0.00
860 8 0.00
861 2 0.00
862 18 0.01
863 33 0.01
864 9 0.00
865 8 0.00
866 178 0.05
867 371 0.11
868 21 0.01
869 6 0.00
870 264 0.08
871 301 0.09
872 8 0.00
873 34 0.01
874 44 0.01
876 260 0.08
877 217 0.06
878 255 0.07
879 8 0.00
880 24 0.01
881 54 0.02
882 3 0.00
883 2 0.00
884 11 0.00
885 4 0.00
886 16 0.00
887 1 0.00
888 1 0.00
889 1 0.00
890 13 0.00
891 48 0.01
892 368 0.11
893 173 0.05
894 5 0.00
895 5 0.00
896 3 0.00
897 10 0.00
898 92 0.03
899 94 0.03
900 7 0.00
902 1 0.00
903 117 0.03
904 30 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (883 bp):
GCATCGGAGTTCATTCCCAGTCTAGATCGGACCGAGAGGTTGCGGCAGCACATGCTAGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGGCATCGGAGAACCTGACCGGCGGC
ATTGGGGTTCCGACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAA
ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGACGTAGTGCCTGCCCGCCGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCATTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCAGGACGACAGCACGCAGAGGGGGA
CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCCTGAGCGCCCGCACGCTCGTTTC
TGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAA
Found at i:12857775 original size:876 final size:874
Alignment explanation
Indices: 12854787--12858736 Score: 5118
Period size: 892 Copynumber: 4.5 Consensus size: 874
12854777 CCCAGTCTAA
* * *
12854787 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCGGATCGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGACTC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** *
12854851 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTT-GACTGGGGCACCATCGCCGGAGCATCGTCGTA
65 GCTCGGGCATGTGATGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGA
* * ** *
12854915 GAACCTGA-CTGACGGCATTGGGGTTCCGATGAT-TAGGGGCCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCAG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTTGTGCGCACATGATG
* * *
12854978 TGCGATGGGTGCTGGTACTTGG-CCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
12855042 ACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGT-TCCTGA
* * *
12855106 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTT
322 AATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
12855171 TTGTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
387 TTGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
** ** * * * *
12855236 AAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCAT
*
12855301 CTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
12855365 GCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGGTT
582 GCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * * *
12855430 GCGCATCCCATCTCTCTGGTCGGA-GTAGTATCTGCCCTTCCGA-CCGCCAGCTCGTTTCGTCGG
647 GCGCATCCCGTCTCTCTGG-CCGACGTAGTGCCTGCCC-GCCCACCCGCCCGCTCGTTTCGTCGG
* * * *
12855493 TTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTGGA-CATGACCGAGGGTTACGGCAGC
710 TTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTAGACCA-GACCAAGGGTTGC-TCAGC
* ** * * *
12855557 AGGATCGACAGCACGCAGAGGGGGACTCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC
773 AGGA-CG-CAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTC
* * * ** * * * *
12855622 GGCAACAGGATCGGCAACACCCTTGTTTCATTGGTTGACTTAG
836 -GC--C-TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
12855665 GCATA-GGAGTTCATTGCTAGTCTAAG-CATGCGGAGTTCATTCCTAGTCTGAGATCGGACCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGAC-T-C---G---A---C----C----A---GACC-GA
* * * * ** **
12855728 TTGAGTGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCAAG
43 --G-G-GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGATGGTGCCGCATTTTTCTTCGTCGGG
** *
12855793 GCACCA---TC---GC-T----GGAGAACCTGACTGGCGGCATTGGGGTTCCGACAATCGGGGGG
104 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGG
**
12855847 -CGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTA
169 CCGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTA
*
12855910 TCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
234 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
12855975 CCAGCAGCCATTAAAGTTCCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
299 CCAGCAGCCATTAAAGTTCCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
12856040 TTTGA-TTTTGTAGCTGTATTTTTTTGCGCATGCCAACAAAAATACAAGGATCACGTGTACCAAG
364 TTCGAGTTTT-TAGCTGAATTTTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
12856104 TTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAAT
428 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCGAAAAT
*
12856169 CATGAAAAATAGAAAACGGGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
493 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
12856234 TTGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATATGCCTAAACCCACC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACC
* * * *
12856299 TACCACCCTATCGGTCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCG
623 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCC
* * * ** * *
12856364 GCCCGCCCACTCGTTTCATTAGTTGCCTTAGGCATACAGAGTTCATTCCCATTCTAAGATTAGAC
688 ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTAGAC
* * * * *
12856429 CAGACCGAGGG-T--T--GC--GA--CAGCACTCAGAGGGGGACCGGACCGA-CCCCCGACTTGA
753 CAGACCAAGGGTTGCTCAGCAGGACGCAGCACGCAGAGGGGGACCCGACCGATCCCCAG-CTTGC
* * * *
12856484 GCATCCCGCCCCTCTGGTCACCTGAGCGCCCGCACGCTTGTTTCTTGGGTTGACTTAT
817 GCATCCCGCCCCTCTGGTCGCCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
12856542 GCATACGGAGTTCATTCCCAATCTAAGATTTGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGACTCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** **
12856607 CTCGGTG-GTGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
66 CTCGG-GCATGTGATGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* *
12856671 AACCTGACCAGTGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGTTTGTGCGCACATGATG
130 AACCTGACCAGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGG-TTGTGCGCACATGATG
** *
12856736 TATGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* ** *
12856801 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTTGCCATTAAAGTGT-TTGA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGT-TCCTGA
* *
12856865 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTT
322 AATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
12856930 TTGTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
387 TTGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * **
12856995 AAAATTTTAAAAAATCCCAAACTGCAAAAGGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCAT
452 AAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCAT
* *
12857060 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCAT-AAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
12857124 GCATTGGCACATAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
12857189 GCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCCACCCACCCGCTCGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTT
*
12857254 GGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTGGACCAGACCAAGGGTTGCCTCAGCAGG
712 GGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTAGACCAGACCAAGGGTTG-CTCAGCAGG
* *
12857319 ACCGGCAGCACGCAGACGGGAACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTCGCC
776 A-C-GCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTCGCC
* *
12857384 TGAGCGCCCACACGCTCGTTTCGTGGGTTAACTTAG
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
12857420 GCATACGGAGTTCATTCCCAGTCTAAGACTCGACCAGACTGAGGGTTGCGGCAGCACATGCTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGACTCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
12857485 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGATGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * *
12857549 ACCTAACCGGCGGCATTGGCGTTCCAACGATCGGGCGGCCGGGGGGTTTGTGCGCACATGATGTG
131 ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-TTGTGCGCACATGATGTG
* * *
12857614 CGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATACCTCATCAAACCTCGATAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * ** * *
12857679 ACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTTGCCATTAAAGTGT-TTGGAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGT-TCCTGAAA
* *
12857743 TGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
12857808 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAATCCATCCCAAA
389 GCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAAAA
* ** * *
12857873 AAATTTTGAAAAATCAAAAACTGCAAAAAGTTTCGAATATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATC
*
12857938 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
12858003 CATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
12858068 CGCATCCCGTCTCTCTGGCCGACATA--G--T----GCCCACCCGCCCGCTCATTTCGTCGATTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTG
* * * * * ** *
12858125 GCTTAGGCAAACGGAGTTCATTCCCAGTCCAAGATCAGACCGGATTAAGGGTTGCAGCAGCAGGA
713 GCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTAGACCAGACCAAGGGTTGC-TCAGCAGGA
* ** *
12858190 TCAGCAGCACGCAGAGGGGGACCTGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGTCGCCT
777 -C-GCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTCGCCT
*
12858255 GAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAG
840 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
12858290 GCATACGAAGTTCATTCCCAGTCTAAGACTCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGACTCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
12858355 CTCGAGCATGTAATGGTGCTGCATTTTTATTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGATGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
12858420 ACCTGACCAGTGGCATTGGGGTTCCGTCGATCAGGGGGGCCGGGGGGGTGTCCGCACATGATGTG
131 ACCTGACCAGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTTGTGCGCACATGATGTG
*
12858485 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
12858550 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTTCCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTTCCTGAAAT
* * * *
12858615 GGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTGTAGCTGTATTTTTTTA
325 GGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
12858680 CGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTT
390 CGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
12858737 TCGAACCTCG
Statistics
Matches: 2716, Mismatches: 278, Indels: 164
0.86 0.09 0.05
Matches are distributed among these distances:
852 57 0.02
853 2 0.00
854 1 0.00
855 2 0.00
856 2 0.00
857 4 0.00
858 2 0.00
859 1 0.00
863 33 0.01
864 6 0.00
865 7 0.00
866 170 0.06
867 363 0.13
868 5 0.00
869 1 0.00
870 270 0.10
871 291 0.11
872 15 0.01
874 4 0.00
876 262 0.10
877 229 0.08
878 285 0.10
879 6 0.00
880 5 0.00
881 44 0.02
884 1 0.00
885 2 0.00
887 3 0.00
891 43 0.02
892 366 0.13
893 163 0.06
894 2 0.00
896 1 0.00
897 2 0.00
898 3 0.00
899 2 0.00
900 1 0.00
901 1 0.00
902 1 0.00
903 57 0.02
904 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (874 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACTCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGATGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTTCCTGAAATG
GGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGC
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCCAAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCATTCTAAGATTAGACCAGACCAAGGGTTGCTCAGCAGGACGCA
GCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTCGCCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:12858780 original size:12 final size:12
Alignment explanation
Indices: 12858763--12858793 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
12858753 GTGCTGGTAC
12858763 TTGGCCCTTATA
1 TTGGCCCTTATA
12858775 TTGGCCCTTATA
1 TTGGCCCTTATA
12858787 TTGGCCC
1 TTGGCCC
12858794 CCTATCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.39
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:12860842 original size:26 final size:26
Alignment explanation
Indices: 12860805--12860857 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12860795 GTTGACTTAG
*
12860805 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12860831 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
12860857 G
1 G
12860858 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12861753 original size:26 final size:26
Alignment explanation
Indices: 12861717--12861769 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12861707 GTTGACTTAG
*
12861717 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12861743 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12861769 G
1 G
12861770 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12863506 original size:25 final size:26
Alignment explanation
Indices: 12863457--12863508 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12863447 GTTGACTTAG
12863457 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12863483 GCATACGGTGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12863508 G
1 G
12863509 ATCGAATTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12863807 original size:875 final size:871
Alignment explanation
Indices: 12859171--12869650 Score: 11153
Period size: 875 Copynumber: 11.9 Consensus size: 871
12859161 GGGTTGTGGC
* * * *
12859171 AGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGTCGATCGGGGGGGGCGGAGGGGTGT
1 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGG-GGGGTGT
* *
12859236 CCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
64 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
12859301 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATT
129 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
12859366 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATGTTGTACACTTCAAGTTTTGA
194 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
12859431 GCTGAATTTTTTTGTGCATTCCAACAAAAATACAAGGATCATGTCCACCTAGTTTGGGGCCAAAA
259 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-----A
* * *
12859496 CTCCTTCTG-AAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAGTCATGAAAAATAGA
319 ------C-GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* * *
12859560 AAACGAGTCATCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTAGAAG
377 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
12859625 CCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCG
442 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
** * *
12859690 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCTCGTTTCATCG
507 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGACCGCTCGTTTCGTCG
* * * * * * * *
12859755 GTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCAGATCAAGGGTTACGATAGT
568 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG-CAGC
** * * * *
12859820 AGGATC-AGCAGCACATAGAGGGGGACCCGATCGATCCTCGACTTGCGCATCCCACCCCTCTGGC
632 AGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
12859884 C-GACTGAGCACCCGCTCGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T
696 CAG-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
12859946 ---C-TA--G-G---AT-CC-GAC--AG----GATCGAGGGTTGCGGCAGCACATTCTAGGCTCG
760 AAGCATACGGAGTTCATCCCAGTCTAAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
12859993 GGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGG
825 AGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * ** * *
12860040 AGCATCG-TGGAGAGCCTGACCTACGGCATTGGGGTTCCGGCGATCGAGCGGGCCGGGGAAAGGG
1 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC--GG---GGG
* * *
12860104 GTGTGCACACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTAT-TTCAGCCCCCTATCCCTCA
60 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCA
* *
12860168 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
124 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
12860233 CCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
189 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
** *
12860298 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAATTTGGGGC
254 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-
* * *
12860363 CAAAACTACTTTCAAACAAATTTTAAAAAAT-CTCAAACCGTAAAAAGTTTCAAAAATCGTGAAA
318 -------AC---GAAA-AAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAA
*
12860427 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATT
371 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
***
12860492 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
436 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
12860557 CTATCAATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACTCGCCTGCC
501 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG---A----CC-G--
* * ** * *
12860622 CGTTCGTTTCGTCGATTCAG-TTAGGCATACCAAGTTCATTCCCAGCCTAAGATCAG-CTCAGAT
556 C--TCGTTTCGTCGGTT-GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CAGAC
* * * ** * *
12860685 CGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAGGGGGACTCGGTCGATCCCCGGATTGCACA
617 CGAGGGTTGC-GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * * * *
12860750 TCTCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTTGTTTCGTGAGTTGACTTAGGCATACAGAG
681 TCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
12860815 TTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGC
746 TTCATTCCCAGTCTAAGCATACGGAGTTCA-TCCCAGTCTAAGAT-----CAGACCGAGGGTTGC
* * * * **
12860880 GACAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCACC
805 GGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC
12860945 GG
870 GG
*
12860947 AGCATCACC-G-G-A----ACCGGCGGCATTGGGGTTCCGACGATCGGGGCGGCCGGGGGGGGTG
1 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCC--GGGGGGTG
* * *
12861005 TGTGCACAGGATGT-CTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCA
63 TGCGCACATGATGTGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
12861069 AACCTCGGGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAATAGCCA
127 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
12861134 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACGCTTCAAGTTT
192 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTT
** * *
12861199 TTAGCTGAATTCGTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCA
256 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG---
* * * *
12861264 AAACTCCTATCAAAAAATTTTGAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAAT
318 --A---C---GAAAAAATTTT-AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* * * *
12861329 AGAAAAGGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTTTATGAATTTAC
374 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
**
12861394 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
439 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* ***
12861459 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGTAATAGTGCCCACCCGCCCACTCGCCCAC
504 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------G--C-C-CG---A-
* * * *
12861524 TCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAGATCCG-CTA
553 ---CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-C
** * * * * *
12861588 AGACCGAAGGTAGCGGCAGGGCAGCAGGATCGGCAGCATGTAGTGGGGGACCCGATCGATCCCCG
613 AGACCG-AGG--GTTGC---GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCG
** * * * * *
12861653 GCTTATGCATCTCACCCCTCTGGTCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGG
672 GCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
12861718 CATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACC
737 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TCCCAGTCTAAGATC--A---GACC
* *** * *
12861783 GAGGGTTACAAAAGCACATGCTGGGCTTGGGCATGTGTTGGTGCCGCATTTTTC-T--T-----C
796 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
*
12861840 A-C--CG--GA
861 ACCATCGTCGG
* * ** * *
12861846 AGCATCGCTGGAGAACCTGACCGGTGGCATTGGGGTTCCGGTGATCGGGGCGACAGGGGGGTGTG
1 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTG
*
12861911 CGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
65 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
12861976 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
130 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
12862041 AAGTGTCTGAAATGGGGACACTTTCTTAAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAG
195 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
12862106 CTGAATTTTTTTATGCATTCCAACAAAAATACAAGGATCATGTCTACCAAAATTTGGGGCCAAAA
260 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACC-AAGTTTGGGG-----A
** *
12862171 TGCCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGA
319 -------CGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
*
12862236 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAG
377 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
12862301 CCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
442 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
12862366 ATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCATAGTGCCCGCCTGCCCGCTCGCTCATTTC
507 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GACCGCTCG----TTTC
* * ** * * *
12862431 ATCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAATGGTTGTGG
564 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-CG
** * * ** * *
12862496 CAGCAGGATCGGTAGCATGCAGAGGGTGACCCGGTCGATCCCCGGCTCGCGCATCCTG-CCCT-T
628 CAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
12862559 GGCCTGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGT
693 GGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
12862624 CTAAG-AT-C--AG---A---C---C---G----GACCGAGGGTTGCAGCACCACATGTTGGGCT
758 CTAAGCATACGGAGTTCATCCCAGTCTAAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
12862669 CGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGG
823 CGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * * *
12862718 AGCATCG-CGGAGAGCCTGACCTGCGGCATTGGGGTTCCGACGATCGAGCGGCCCGGGGAAAGGG
1 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC--GG---GGG
* * *
12862782 GTGTGCGCACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCAT
60 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
12862847 CAAGCCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
125 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
12862912 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC-GAAAATCTTGTACACTTCGAGTT
190 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
12862976 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATATCTACCAACTTTGGGG-C
255 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGAC
* * * *
12863040 GAAAAAATTTTAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACAAGT
320 GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
12863105 CGTCTTGCCATGAAACGTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
385 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
12863170 ATGGCATTGGCATGTAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATTGATTCACGG
450 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
12863235 CTTGCACATCCCGTGTCTTTGGCCGGCGTAGTGCCCGACCGCTCGTTTCGTCGGTTGGCTTAGGC
515 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * ** * * *
12863300 ATACGGAGTTCATTCCCAGTCTAAGATCAAAGCAAATTGAGGGTTGTGGTAGCAGGATTGACAGC
580 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-CGCAGCAGGATCGACAGC
* * ** * *
12863365 ATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCATATCCCGCCCCTCTAGCCAGCTGAGCACTC
644 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCC
* *
12863430 GCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGTGTT
709 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
*
12863495 CATCCCAGTCTAAGATCGAATTAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGT
774 CATCCCAGTCTAAGATC-----AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGT
* * * * *
12863560 TGGTGCCGTATTTTTCCTCGCCTGGGCACAATCGTCGG
834 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * * *
12863598 AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTAC
1 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
12863663 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
12863728 TCGAGAACTCACACTCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGCCAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
12863793 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTAAGATTTTAG
196 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAG
* * *
12863857 CTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
260 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-----A-
* * *
12863922 TCCTTTCG-AAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGATTCAAAAATCGTGAAAAATAGA
319 ------CGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* *** * *
12863985 AAATGAGTCGTCTTAAAATTAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
377 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** **
12864050 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACAATATCG
442 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
12864115 ATCCACGGCTTGCACATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCACCCGTCTGCCCGCTCG
507 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG---A---------CCGCTCG
* * * *
12864180 TTTTGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
560 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * *
12864245 GCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCC
625 GC-GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * * *
12864310 CTCTGGCCAGCTGAGCACCCGTACGCTTGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCC
689 CTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
12864375 CAGTCTAAGCTTATGGAGTTCATTCCCAGTGTAAGAT-----CGAGGGTTGCGGCAGCAAATGCT
754 CAGTCTAAGCATACGGAGTTCA-TCCCAGTCTAAGATCAGACCGAGGGTTGCGGCAGCACATGCT
* * *
12864435 GGGATCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGG---CA----C--
818 GGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * *
12864480 --CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGAGGGGCCGGGGGGTGTG
1 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTG
*
12864543 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAAC
65 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
12864608 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
130 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
12864673 AAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
195 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
12864738 CTGAATTTTTTTATGCATGCCAACAAAAATATAAGGATCATGTCTACCAGGTTTGGGGCCAAAAT
260 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-----A-
* * **
12864803 GCCTTCCAAAAAAATTTT--AAATTCC-GAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAA
319 ------CGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
12864865 AACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAGC
378 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
12864930 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
443 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
12864995 TCCACGGCCTCCGCATCCCGTCTCTCTGGTCGGCGTAGAGCCCACCCGTCCGCCCACCTGCTCGT
508 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG------C--CCG---ACC-GCTCGT
** *
12865060 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGCTT-
561 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
*
12865124 ----GC--G---G-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCT
626 CGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* ** * *
12865179 CTGGCTAGCTGAGCAATCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCA
691 CTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * **
12865244 GTCTAAG-ATA--G-G---AT--C-G-----GACCGGACCGAGGCTTGCGGCATCACATGCTCAG
756 GTCTAAGCATACGGAGTTCATCCCAGTCTAAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ***
12865294 CTC-AGGCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATTAACGG
821 CTCGA-GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * * * *
12865345 AGCATCGTCGGAGAACCTGATCGGTGGCATTGTGGTTCCGACGATCGGGGGGTCGAGGGGAGGGG
1 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-C---CGG-GGGG
* * * *
12865410 TGTGCACACATAATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATC
61 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
12865475 AAACCTCGAGAACTCACACCCCCTTACAG-GTAATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
126 AAACCTCGAGAACTCACACCCCCTTAAAGAG-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
12865539 CATTAAAGTGTTTGAAATGGGGATAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
190 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
12865604 TTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCA
255 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG--
*
12865669 AAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCTTGAAAA
318 ---A-------CGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
12865733 ATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATTT
372 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
12865798 ACAAGCCATAAAAATGGCATTGGACATGTAAAAATATGAAGATGTGCCTAAACCCACCGACCACC
437 ACAAGCCATAAAAATGGCATTGG-CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * *
12865863 CTCTCGATCCACGGCTTGTGCAT-CCGTTTTTCAGGCCGACGTAGTGGCCGCCCACCCGCTCGCT
501 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-G-C-CCGA----C-CGCT
* * *
12865927 CGTTTTGTCGGTTGGCTTAGGGATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
558 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* *
12865992 TT----A-C-GG-T----AGCACACAGAGGGGGACCCGAACC-ATCCTCGGCTTGCGCATCCCGC
623 TTGCGCAGCAGGATCGACAGCACGCAGAGGGGGACCCG-ACCGATCCCCGGCTTGCGCATCCCGC
* * * *
12866045 CCCT-TTGCCTGGCTGAGCTCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
687 CCCTCTGGCC-AGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
12866109 TCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCATACCAGACCGAGGGTTGCGGTAG
751 TCCCAGTCTAAGCATACGGAGTTCA-TCCCAGTCTAAG---AT--CAGACCGAGGGTTGCGGCAG
* * *
12866174 TACATGCTGGGCTCTG-GCATGTGTTTGTTGCC-CCTTATTTCTTCGTCGGGGCACCATCGTCGG
810 CACATGCTGGGCTC-GAGCATGTG-TTGGTGCCGCATT-TTTCTTCGTCGGGGCACCATCGTCGG
** * ** * * * *
12866237 ATTATTGTTGGAGAATCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGAGCCGGGGGGTGTGC
1 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
12866302 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
12866367 T-TAGGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
131 TCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
12866431 AAGTGTCTGAAATGGGGACAATTTTTTCAAATGGCCACAAAA-----T-CACTTCGAGTTTTTAG
195 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
12866490 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAATT
260 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG----GA--
* * * *
12866555 CCTTTCAAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAATTTTAAAAATCGTGAAAAATAGAA
319 -----CGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
12866619 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-ATATTTAGAAG
378 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA-ATTTACAAG
* *
12866683 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCTTAAACCCACATACCACCCTATCG
442 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * *
12866748 ATCCACCGCTTCCACATCCCATCTCTCTGGCCGGCGTAGTGCCTGCCCGCTCGTTTCGTCGGTTG
507 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCTCGTTTCGTCGGTTG
* * * ** * * * *
12866813 GCTTAGGCATATGGAGTTCATTCCCATTTTAAGATTGGACCGGACTGAGGGTTGCAGCAACAAGA
572 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCAGGA
* * * * *
12866878 TCGATAGCATGCAGAGGGGGACCCGACCGATCCCCGG-TTGCACATCCCGCCCCTCTGGTCAGTT
636 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCT
* *
12866942 GAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT
701 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * ** * *
12867006 -C-G-G---A---C---C---G----GACCGAGGGTTGGGGTAATACATGCTGGGCTCGTGTATG
766 ACGGAGTTCATCCCAGTCTAAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATG
* * * *
12867052 TGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGCCGG
831 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * * * *
12867093 AGCATCGCCAGAGAACCTAACCGGTGGCATTAGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGT
1 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGT
*
12867158 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAA
64 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
12867223 CCTCAAGAACTCACACCCTCTTAAAAAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATT
129 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
12867288 AAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
194 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * ** *
12867352 GCTAAATTTTTTTGTGCATGCCAAGAAGGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
259 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-----A
* * *
12867417 TTCCTTTCGAAAAAAATTTAAAAAAGTCCCGAACCGTAAAAAGTTTCAAAAAATAATGAAAAATA
319 -------CGAAAAAATTTTAAAAAA-TCCTGAACCGTAAAAAGTTTC-AAAAATCATGAAAAATA
* * *
12867482 GAAAACGAGTCGTCTTGCCCTGAAACTTCACGTCAAGGCTTAGGGGACCATTGTATGAATTTACA
375 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
12867547 AGCCATAAAAATGGCATTGGAACAT--AGAAATATGAAGACGTGCCTAAACCCACCTACCACCCT
440 AGCCATAAAAATGGCATTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
12867610 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCG
503 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--T----GCCCGACCGCTCG
* * *
12867675 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTA
560 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * * * *
12867740 GCAGCAACAAGATCGGCAGCACGTAGAGGGGGACCC-AGCCGATCCCCGACTTACGCATCCCACC
625 GC-GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCC
* *
12867804 ACTCTGGCC-GACTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
688 CCTCTGGCCAG-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* ** *
12867868 CCCAGTCTAAG-AT-C-G-G---A---C---C---G----GACCGAGGGTTGTGAAAGAACATGC
752 CCCAGTCTAAGCATACGGAGTTCATCCCAGTCTAAGATCAGACCGAGGGTTGCGGCAGCACATGC
* *
12867913 TGGGCTC-AGGCATGTGTTGGTGCCGTATTTTTCTTCTTCGGGGCACCATCGTCGG
817 TGGGCTCGA-GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * * * * *
12867968 AGCATCACCGGAAAACCTGAGCGGCAGCATTGGGGTTCCGTACGAAACGGCGGGGTC-GGGGGTG
1 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCG-ACG-ATCGG-GGGGCCGGGGGGTG
*
12868032 TACGCACCATGATGTGCGATGGGTGCTGGTGACTTGGGCCCTTATATT-GCCCCCTATCCCTCAT
63 TGCGCA-CATGATGTGCGATGGGTGCTGGT-ACTT-GGCCCTTATATTGGCCCCCTATCCCTCAT
12868096 CAAACCTCAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-TGCCAGTAG
125 CAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
12868160 CCATTAAAGTGTCTGAAATGGGTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
189 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
12868225 TTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACAAAGTTTGGGAC
254 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG--
* *
12868290 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAA
317 ---GA-------CGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAA
*
12868355 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTT
372 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** * *
12868420 ACAAGCCATAAAAATTTC-TTGGCATGTAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCC
437 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
12868484 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGAGCCCGCCCACCCGTTCGTTT
502 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG---A-CCGCTCGTTT
* * * * *
12868549 CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAATATCGGACCAAACCAAGGGTT---
563 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * * * * *
12868611 -------A-CGACAGCACGCAGAGGGTGACCCGATCGATCCTCGGCTTACGCATCCCACCCTTCT
628 CAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * ** * * *
12868668 GGCCGGTTGAGTACCTGCACGCTCGTTTTATGGGTTTACCTAGGCATACGAAGTTCATTCCCAGT
693 GGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * **
12868733 CTAAAGCATACGGAGTTCGTTCCCAATCTAAGATCAGATCGGACTGAAGGTTACGATAGCACATG
758 CT-AAGCATACGGAGTTC-ATCCCAGTCTAAGATCAGA-C---C-GAGGGTTGCGGCAGCACATG
* * * * **
12868798 CTGGGCTCGGGTATGTGTTGGTGCCGCTTTTTTCTGCGTCGGGGCACCATCG-CTAA
816 CTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GG
* * * * * * *
12868854 AGCATCGCCAGAGAACCTGGCCGGTGGCATTGGGGCT-CTAGTGATCGGGGGGGTCGGGGGGTGT
1 AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGTGT
* * *
12868918 GCGCACGTGATGTGCGATGGGTGCTGGTTCTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAA
64 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
12868983 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGCTTTTACAGGTTTGCTACCAGTAGCCATT
129 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * ** * *
12869048 AAAGTGTTTGAAAT-GGGACACATTTTTCAAATGGTTGCAAAATCTTGTACACTTCAATTTTTTA
194 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * ** * *
12869112 GCTGAATTTTTTTGTGGATGCCAACAAAATTACAAGGATCACATCTTCCAAGTATGGGGCTAAAA
259 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG------
* ** *
12869177 ATCCTTCTGAAAAAATTTTTAAAAATCCTGAACCACAAAAAGTTTCAAAAATTATGAAAAATAGA
318 A-----C-GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
12869242 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
377 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
12869307 CCATAAAAATGGCATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCACTTACCACCCTATCG
442 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
12869372 ATCTACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTG--C--CCGCTCGTTTCCTCGGTTG
507 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCTCGTTTCGTCGGTTG
* ** * *
12869433 GCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATTGGACCGGACTGAGGGTTGCGGCAGCAGGA
572 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCAGGA
** * * * * * *
12869498 TCGGTAGCATGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGTCCCTCTGGTCGGCT
636 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCT
* *
12869563 GAAG-GCCCGCACGCTCG-TTCTGTGGGTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAAGC
701 G-AGCACCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
12869626 ATACGGAGTTCATTCCCAGTCTAAG
764 ATACGGAGTTCA-TCCCAGTCTAAG
12869651 CATACGGAGT
Statistics
Matches: 8288, Mismatches: 925, Indels: 779
0.83 0.09 0.08
Matches are distributed among these distances:
851 2 0.00
853 106 0.01
854 4 0.00
855 65 0.01
856 122 0.01
857 82 0.01
858 147 0.02
859 160 0.02
860 8 0.00
861 213 0.03
862 4 0.00
863 71 0.01
864 26 0.00
865 17 0.00
866 175 0.02
867 158 0.02
868 46 0.01
869 19 0.00
870 180 0.02
871 378 0.05
872 318 0.04
873 219 0.03
874 250 0.03
875 638 0.08
876 360 0.04
877 86 0.01
878 185 0.02
879 307 0.04
880 285 0.03
881 545 0.07
882 296 0.04
883 217 0.03
884 62 0.01
885 84 0.01
886 125 0.02
887 319 0.04
888 213 0.03
889 7 0.00
890 1 0.00
891 98 0.01
892 118 0.01
893 2 0.00
894 1 0.00
895 3 0.00
896 10 0.00
897 1 0.00
898 167 0.02
899 294 0.04
900 198 0.02
901 48 0.01
902 1 0.00
903 69 0.01
904 380 0.05
905 11 0.00
906 33 0.00
907 131 0.02
908 6 0.00
909 4 0.00
910 4 0.00
911 15 0.00
912 194 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (871 bp):
AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACGAAAAA
ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGCAGCAGGATCGACAGCACGCAGA
GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATCCCA
GTCTAAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATT
TTTCTTCGTCGGGGCACCATCGTCGG
Found at i:12866130 original size:26 final size:26
Alignment explanation
Indices: 12866094--12866146 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12866084 GTTGACTTAG
*
12866094 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12866120 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12866146 G
1 G
12866147 ATCATACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12868749 original size:27 final size:27
Alignment explanation
Indices: 12868711--12868763 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
12868701 GTTTACCTAG
*
12868711 GCATACGAAGTTCATTCCCAGTCTAAA
1 GCATACGAAGTTCATTCCCAATCTAAA
* *
12868738 GCATACGGAGTTCGTTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12868764 GATCAGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (27 bp):
GCATACGAAGTTCATTCCCAATCTAAA
Found at i:12869628 original size:26 final size:26
Alignment explanation
Indices: 12869593--12869676 Score: 159
Period size: 26 Copynumber: 3.2 Consensus size: 26
12869583 TGTGGGTTGA
12869593 CTAAGGCATACGGAGTTCATTCCCAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
12869620 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
12869646 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
12869672 CTAAG
1 CTAAG
12869677 ATCGGACCGG
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
26 53 0.93
27 4 0.07
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:12870288 original size:26 final size:25
Alignment explanation
Indices: 12870250--12870302 Score: 88
Period size: 26 Copynumber: 2.1 Consensus size: 25
12870240 TGGGTTGACT
12870250 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATT-CCAGTC
*
12870276 TAAGCATATGGAGTTCATTCCAGTC
1 TAAGCATACGGAGTTCATTCCAGTC
12870301 TA
1 TA
12870303 GACCGAGGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (25 bp):
TAAGCATACGGAGTTCATTCCAGTC
Found at i:12871165 original size:26 final size:26
Alignment explanation
Indices: 12871128--12871180 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12871118 GTTGGCTTAG
12871128 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGTAGTTCATTCCCAGTCTAA
12871154 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATAC-GTAGTTCATTCCCAGTCTAA
12871180 G
1 G
12871181 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGTAGTTCATTCCCAGTCTAA
Found at i:12873529 original size:903 final size:898
Alignment explanation
Indices: 12869808--12883794 Score: 11825
Period size: 893 Copynumber: 15.4 Consensus size: 898
12869798 TTGTGGGGAG
* *
12869808 AAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAA
1 AAAACTCCTTTCGAAAAAATTTTAAAAAAT-CCGAA-CCGAAAAAGTTTCAAAAATCATGAAAAA
* * * *
12869873 GAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTCAGGAACCATTGTATGAATTTA
64 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* ***
12869938 AAAGCCATAAAAATGGCATTGGCACACCGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
129 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * *
12870003 ATCGATCCACGGCGTGCGCATGCTGTCTCTCTGGCCGACATAGTGTCTGCATGACCGCCCGCCCG
194 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-C--C-CGCCCGCCCG-CCG
* * ** * * *
12870068 CCCGCTCATTTTGTCGGTTGGCTTAGGCATACAAACTTCATTCCCAGTCTAAGATCAGATCGA-A
254 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGA
* * ** * * *
12870132 CTGAGGGTTGCGGCAATAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATACCAGGCTTGCAC
318 CCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * *
12870197 ATCACGCCCCTCTGGTCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGA
383 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
12870262 GTTCATTCCCAGTCTAAGCATATGGAGTTCATT-CCAGTC-----T---A---GACCGAGGGTTC
448 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
* * * ** *
12870315 CAGCAGCACATGCTTGGCTCGGGCATGTGCTAGTGTTGCT-TTTTTCTTCGTCGGGGCACCATCG
513 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG-TATTTTTCTTCGCCGGGGCACCATCG
* * *
12870379 CCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCCG-G--C--GAT---C-GGGGG
577 TC-GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG-TTCCGCGATCGGGGTGGCCGGGGGG
* * *
12870435 TGTGCGCGCATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTTATC
640 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
12870500 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
705 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
12870565 ATTAAAGTGTCTAAAATTGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTT
770 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * *
12870630 TTAGCTAAATTTTTTTGTACATGCCAAGAAAAAATACAAGGATCACGTCCACCAAGTTTGGGACA
835 TTAGCTGAATTTTTTTGTGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
12870695 AAAACT-CGTCCCAAAAAATTTTTAAAAAATCCCAAACCGCAAAAGGTTTCAAAAATCATGAAAA
1 AAAACTCCTTTCGAAAAAA-TTTTAAAAAAT-CCGAACCG-AAAAAGTTTCAAAAATCATGAAAA
*
12870759 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG-----
63 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * **
12870819 --AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACTA
128 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
12870882 TATCGATCCACGGATTGCACATCCCGTCTCTCTGGCCGGCATAGTACCCGTCCGCCCACCGCCCG
193 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCG
** * * * * *
12870947 CTCGTTTCGTCGGTTGGCTTAGAAATACGGAGTTCATTCCTAGTCTATGATCGGACCAGACCAAC
258 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
* * * * * * ** *
12871012 GGTCAAGGCAGCAGGATCGGCAGGATGTAGAGGGGGACCCGATCGATCCCCAACTT-CTGCATCT
323 GGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC-GCATCC
* * * *
12871076 CGCACCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGTAGTTC
387 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** *
12871141 ATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA-TCGGATTGAGGGTTGGGG
452 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGG
* * *
12871205 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGAGCACCATCGTCGG
516 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTC-G
* * *
12871270 AGCATCG-CGGAGAACCTAACCGACGGCATTGGGGTTCCGACGAT-GGGGGGAGCC-GGGGGTGT
580 AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG-CGATCGGGGTG-GCCGGGGGGTGT
* *
12871332 GCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAA
643 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
12871397 CCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATT
708 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * * *
12871462 AAAGTGTTTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTTTTTG
773 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
12871527 GCTGAATTTTTTTGTGCTTACCAAAAAAAATACATGGATCACGTCTACCAAGTTTGGGGCC
838 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
12871588 GAAACT-CTTTCGAAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCATGAAAA
1 AAAACTCCTTTCG-AAAAAATTTTAAAAAAT-CCGAA-CCGAAAAAGTTTCAAAAATCATGAAAA
* * *
12871652 ATAGAAAACGAGTCGCCTTGCCATGAAACTTCACTTGAAGGCTTAAGGCACCATTGTATGAATTT
63 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** *
12871717 ACAAGCCA-AAAAATTTTCGTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
128 ACAAGCCATAAAAA-TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * *
12871781 CTATCGATCCACGACTTGCGCATCCTGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCAGCCCGCT
192 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCC
* * * *
12871846 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCGGATCAGACTG
256 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCG
* * * * * * * * * *
12871911 AGGGTTGCGACAGTAGGATTGGCAACACGCAGAGGGGGTCACGGCCGATCCCCGGCATGCACATC
321 AGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * **
12871976 CCGCCCCTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAAGCATACAAAGTT
386 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * * * * *
12872041 CATTACCAGTCTAAGCATAAGGAGTTCATTTCCAGTCTAAGATTGAACCGAACTGAAGGTTGCGG
451 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGG
* * **
12872106 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCATCATCGGGGCACCA---T---
516 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGA
* * * * *
12872165 -CA-C--CGGAGAACCTGACCGGTGGCATTGGGGTTCTGACGATAGAAGGG-GTCAGGGGGGTGT
581 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG-CGATCG--GGGTGGCCGGGGGGTGT
* * *
12872225 GCGCACGTGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAA
643 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
12872290 CCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATT
708 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
12872355 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTA
773 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
12872420 GCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGAATCACGTCTA-AAATGTTTGGGGCC
838 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCC
*
12872481 AAAACTCC-TTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
1 AAAACTCCTTTC-GAAAAAATTTTAAAAAATC-CGAACCG-AAAAAGTTTCAAAAATCATGAAAA
* * *
12872545 ATAGAAAATGAGACGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
63 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
12872610 ACAAGCCATAAAAATGGCATTGGCATGCAGAAGTATGAAGATGTGCCTAAACCCACCTACCACCC
128 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
12872675 TATCGATCCACGGCTTGCGCATCCTGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCTCTCGCCC
193 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC-CGCCC
* * * * * * *
12872740 GCTAGTTTTGTCAGTTGGCATAGGCATACGGAGTTAATTCACAGTCTAAGATCGAACCAAACCGA
257 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGA
* ** * ** ** * * *
12872805 GGGTTATGATAGCAAGATCGATAGCAAACAGAGGGGCACCCGGCCAATCCCCGGCTTGCGCATCC
322 GGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * * * *
12872870 CGCCCCTCTGGCCGGCTAAGCGCCCGCATGCTCATTTTGTGTGTTGACTTAGGCATA-AGAGTTC
387 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
12872934 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTGGCGGC
452 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGC
*
12872999 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGA
517 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTC-GA
* * * *
12873064 GCATCGTCGGAGAACCTGACCGACGGCGTTGGTGTTCCAGCAATCGGGGTGGCCGGGGGGGTGTG
581 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGTGGCC-GGGGGGTGTG
*
12873129 CACACATGATGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
644 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * * *
12873193 CTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTCTACAGGTTT-CTGGCCAATTGCAATT
709 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATT
* ** *
12873257 AAAGTGTCTGAAATGGGGATACTTTTTTTGAATGGTCACAAAATCTTGAACACTTCGAGTTTTTA
773 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * ** *
12873322 GCTAAATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCGTGTCTACCAAGTTTGGGGTC
838 GCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
12873384 AAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAGCTTTCGAAAATCATGAAAAA
1 AAAACTCCTTTCGAAAAAATTTTAAAAAATC-CGAACCGAAAAAG-TTTCAAAAATCATGAAAAA
* * * * *
12873449 TAAAAAACGAGTCATCTTGCCATGACACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTA
64 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
12873514 CAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
129 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
12873579 ATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCTGCCTGCCCG
194 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC-GCCCG
* * * * *
12873644 CTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAG
258 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
* * * * * *
12873709 GGTTACGGCAGTAGGATCAGCAGCACGTAGA-GGGGACCCGACCAATCCCCGGTTTACGCATCCC
323 GGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * * *
12873773 GCCCCTTTAGCCAGCTGAGCACCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
388 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * ** * *
12873838 TTCCCAGTCTAAGAAAATGGAGTTCATTCAGAGTCTAAGATCGGACTGGACGGAGGGTTGCAGCA
453 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCA
* * *
12873903 GCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCG-C---G-AGCA---TC--G-
518 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGAGC
* * *
12873957 --C-T-GGAGAACCTGACCAGTGGCATTGGGGTTCCGGCGATC------G--GAGGGGTGTGCGC
583 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGTGGCCGGGGGGTGTGCGC
*
12874010 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTC
647 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
12874075 GAGAACTTACACCCCTTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
712 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
12874140 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAGAATATTGTACACTTCGAGTTTTTAGCTG
777 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
12874205 -ATGTTTTTT-T---TG------------C---G-T---G----CCAAGTTTGGGGCC
842 AAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * **
12874235 AAAACTCCCTTCAAAAAAATTTTAAAAAATCCTGAACCAGAAAAAGTTTCAAAAATTGTGAAAAA
1 AAAACTCCTTTCGAAAAAATTTTAAAAAATCC-GAACC-GAAAAAGTTTCAAAAATCATGAAAAA
*
12874300 TAGAAAACGAGTCGTCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
64 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
12874365 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTTCCTAAACCCACCCAACATCCT
129 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
12874430 ATCGATCCACGGCTTGCGGATCCCATCTCTCTGACCGACGTAGTGCCCGTCCGCCCGCCCGCTCG
194 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCCCG
* * * * *
12874495 CTCGTTTCGTCGGTTAGCTTAGGCATACGAAGTTCATTCCCACTCTAAGATC-ATATCAGACTGA
258 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGA
* * *
12874559 GGGTTATGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
322 GGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* *
12874624 CACCCCTCTGG-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTGGGCATACGGAGTTC
387 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
12874688 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCCAAGATCAGACCGGACCGAGGGTTGCGGT
452 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGC
* * *
12874753 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGTACCA---TC--G
517 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGAG
* *
12874813 ---C-T-GGAGAACCTGACCGGCGGCATTGGGG-TAC-CGA-C--GAT---CGGGGGGTGTGCGC
582 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGCGATCGGGGTGGCCGGGGGGTGTGCGC
12874865 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCCTATCCCTCATCAAACCT
647 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCT
* *
12874930 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAA
711 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
12874995 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCT
776 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
12875060 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTATACCATGTTT-GGGCC
841 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* ** *
12875117 AAAAATCCTCCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
1 AAAACTCCTTTCGAAAAAATTTTAAAAAATCC-GAACCG-AAAAAGTTTCAAAAATCATGAAAAA
* * *
12875182 TAGAAAATGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTA
64 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
12875247 CAAGGCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCT
129 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
12875312 ATCAATCCACGGCTTGCGCATCCCATCTCTCTGGCAGGCGTAGT----------AC-CCGCCCGC
194 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGC
* * * *
12875366 TCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGGCTAAGATTGAACCAGACCAAGG
259 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGG
* ** * * * * * * *
12875431 CTTGTGGCAACAGGATTGGCAGCACGCAAAGGGGGACACGGCCGATCCCTGGCTTGCGCATCCAG
324 GTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* ** *
12875496 CCCCTCTGGTCGGCTGAGCGCCCTTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
389 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
12875561 TCCTAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACT-GACCGAGGGTTACGACAG
454 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAG
** * *
12875625 CACATGCTGGGCTTAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCGTCAGAGC
519 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTC-GAGC
* * * * * *
12875690 ATCGCCGAACAACCTGACCGGTGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGC
583 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG-CGATCGGGGTGGCCGGGGGGTGTGCGC
* *
12875755 ACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTC
647 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
12875820 AAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
712 GAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
12875885 GAGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACGAAATCTTGTACACTTTGAGTTTTTAGCT
776 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
12875950 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CATGTTT-GGGCC
841 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
12876006 AAAACTCC-TTCTGCAAAAAGTTTCAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAA
1 AAAACTCCTTTC-G-AAAAAATTTTAAAAAATCC-GAACCG-AAAAAGTTTCAAAAATCATGAAA
*
12876070 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
62 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
12876135 TACAAGCCATAAAAATGGAATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACTTGCCACC
127 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* **
12876200 CTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTAACGTAGT----GCCCG--C-CCGCCC
192 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCC
* * * * * *
12876258 ACTCGTTTTGTTGGTTGGCTTAGGCATACGGGGTTCATTCTCAGTCTAAGATC-AGACCAGATCG
257 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCG
* * * * * *
12876322 AGGGTTACGGCAGCAGGATCGACAGTACGCAAAGGGGGACCTGACCGATCCTCAGCTTGCGCATC
321 AGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * * *
12876387 CCGCCTCGCTGGCCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
386 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
12876452 CATT-CCAGGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTACG
451 CATTCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCG
* * * * * *
12876516 ACAACACATACTGGGCTCGGGCATGTGCTGGTTCTGTATTTTTCTTTGCCGGGGCACCATCGTCG
515 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTC-
* * *
12876581 GAGCATCATCGAAGAACCTGACCGCCGGCATTGGGGTTCCGACGATCGGGG-GGACCGGGGGGGT
579 GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG-CGATCGGGGTGG-CC-GGGGGGT
* *
12876645 GTGCGCACATGATTTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
641 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
12876710 AACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
706 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
12876775 TTAAAGAGTCTGAAATGGGGACACGTTTTTCAAATGGTCACGAAATCTTGTACACTTCGAGTTTT
771 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
12876840 TAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
836 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
** * * * **
12876903 AAAACTTTTTTTGAAAAAATTATAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAA
1 AAAACTCCTTTCGAAAAAATTTTAAAAAAT-CCGAACCG-AAAAAGTTTCAAAAATCATGAAAAA
* * * *
12876968 CAAAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTA
64 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * * *
12877033 CAAGCAATAAAAATGGCATTGGAATGCATAAATATGAAGATGTGCCTAAACCCACCTAGCACCCT
129 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * *
12877098 ATCGATCCACGTCTTGCGTATCCCGTCTCTCTGGCCGGCATAATGCTCGCCCGCCCGTCGGCCCG
194 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCCCG
* *
12877163 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGA
258 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGA
** ** * ** * *
12877227 GGGTTGTGATAGCAGGATTGGCAGCACATAGAGGGGGACCCGGA-TGATCCCCGACTTGCGCATC
322 GGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATC
* * * * * *
12877291 CCGCCCCT-TCGGCTGGCTGAGCGTCTGCATGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGT
386 CCGCCCCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
12877355 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACA
450 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCG
* *** * * * *
12877420 GTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAACA-TTTACTTTGCCGGGTCACCATCGCCA
515 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTC-
* * * * * * *
12877484 AAGCATCGCCGGAGAACCTGACCGGCGGCGTTGCGGTTTCGGTGATCGGGGGGGCCGGGGGGGTG
579 GAGCATCGTCGGAGAACCTGACCGGCGGCATTG-GGGTTCCGCGATCGGGGTGGCC-GGGGGGTG
* **
12877549 TACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGATCCCCTATCCCTCATCAA
642 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
12877614 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
707 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * * * *
12877679 TAAAGTGTCTGAAATTGGTACATTTTTTTCAAATGATCACAAAATCTTGTTCACTTTGAG-TTTT
772 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
12877743 AGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC
837 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
12877805 AAAACTCCTTCCAAAAAAATTTAAAAAAATCCTGAACCGCAAAAA-TTTCAAAAATCATGAAAAA
1 AAAACTCCTTTCGAAAAAATTTTAAAAAATCC-GAACCG-AAAAAGTTTCAAAAATCATGAAAAA
*
12877869 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAA
64 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * *
12877934 AAAGCCATAAAAATGGCATTGGCACGTAGTAATATCAAGATGTGCCTAAACCCACTTGCCACCCT
129 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * ** *
12877999 ATCGATTCACGGCTTGCGCATCCTGTCTCTCTGGCTGACGTAGT----GCCCG--C-CTACCCAC
194 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGC
* * * *
12878057 TCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTAAGATCGGATC-GACCGAG
259 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC-TAAGATCGAACCAGACCGAG
** * * * * *** *
12878121 GGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACTCGATCGATCCCCAATTTGCACATCCC
323 GGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* ** ** * *
12878186 GCCCCTCTGGCTGGCTGAGCGCCTACACG---G-ACCGAGGGTTGTGACAGTAGG-ATCAAC--A
388 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG-T-TGAC-TTAGGCAT--ACGGA
* *** * * * * * * ***
12878244 G--CA--CGCAG-CGGGGGA-CCCGACCGATTCCCGACTTACGCA-T-TATG-CCCCTCTGG-CC
448 GTTCATTCCCAGTCTAAGCATACGGA--G-TT--C-A-TT-CCCAGTCTAAGATCGGACTGGACC
* * * * * * ** * * * *
12878299 -A-GCTGAGCGCCCGTAC--GCTCGTTTCGTGG-GT-TGACTTAGGCAT-ACGGA--GTTCATTC
505 GAGGGT-TGCGGCAGCACATGCTGGGCTCG-GGCATGTG-C-T-GG--TGCCGTATTTTTC-TTC
*** * ** ** * * * * * * *
12878355 -CCAGTCTCAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACTGGA-CTGAGG-TTTGTGG--
562 GCC-GGGGCACCAT-CGTCGAGCA-T--C-GTC--GGA-GAACCT-GACCGGCGGCATTGGGGTT
* * * * * * * * * ** *
12878415 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCAC-CGAGGCACCATCACCG
617 CCGC-GAT-C-GGGGT-G-GC-CG-G--GG-G--G---TGTGC-GCACATGATGTGCGAT----G
* * * ** ** *
12878479 GAGCTTCGCCGGAGAACTT-GACCTGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
662 G-G--T-G-CTG-GTACTTGGCCCT-T-ATATT--GG--CCCCCTATC-------CC--------
* ** * * * ** *** **** *
12878543 GTGCGTACAAGATGT-G-GAATGGGTGCTAGTACTTGGCCCTTATATTAGCCCCCT-ATCCCTCA
700 -T-CAT-CAA-ACCTCGAGAA---CT-C-A-CAC---CCCCTTA-AAGAG-CATTTGAGATTTTA
**** * * * * * * * * *** * * *
12878605 TCAAACCT-CGAGAACTCA-CACCCCTTAAAGAGCATTTTAGAT-TTTACAGGTTTTCTTCCAGT
750 -CAGGTTTGC-TG--C-CAGTAGCCATTAAAGTG--TCTGAAATGGGGACA-CTTTT-TTCAAAT
* * * * * * ** *
12878667 AGCCATTAAAGTGTCTG-A-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
806 GGTCA-CAAAATCT-TGTACACT-TCG--A-GTTTTT---A--G---------C-TG-A-A-TT-
* ********** * ** *
12878730 GAGTTTTTACGTACATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGTATCTACCAAGTGTG
846 ---TTTTT--GTGCATGCCAACAAAAAT---AC-AAGGAT-C----A-CG--TCTACCAAGTTTG
12878795 GGGCC
894 GGGCC
* *
12878800 AAAACTCCTTTCGAAAAAAGTTTAAAAAATCTCGAACCGTAAAAA-TTTCAAAAATCGTGAAAAA
1 AAAACTCCTTTCGAAAAAATTTTAAAAAATC-CGAACCG-AAAAAGTTTCAAAAATCATGAAAAA
* * * * *
12878864 TAGAAAACGAGTCATCTTGCCGTGAAACTTCACATTAAGGCTTAAGGGACCACTGTATGAATTTA
64 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
12878929 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACACACCTACCACCCT
129 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
12878994 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCTGCCCGTCCG
194 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCCCG
* * * *
12879059 TTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCAAGTCTAAGATCGGACCAGACCGAG
258 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
* * * * *** * * *
12879124 GGTTGCGGCAGCAGGATCGACAGCATGCAGAGAGGGACCCGGTTGATCCCCAGCTTACGCGTCCC
323 GGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* ** * * * **
12879189 GCCCCTTTGGCCAACTGAGCGCCCGTACACTCATTTATATGGGTTGACTTAGGCATACGGAGTTC
388 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-CGTGGGTTGACTTAGGCATACGGAGTTC
* ** * * *
12879254 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACCGGACCAGACTGAGGTTTGCGGT
452 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGC
* * * *
12879319 AGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGA
517 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTC-GA
** * * * *
12879384 GCATCACCGGAGAACTTGACTGGCAGCATTGGGGTTCGGGCGATCAGGGG-GGCCGGGGGGTGTG
581 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC-CGCGATC-GGGGTGGCCGGGGGGTGTG
* *
12879448 CGTACATGATGTG-GAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
644 CGCACATGATGTGCG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
12879512 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATT
708 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
12879577 AAAGTGTTTGGAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTG
773 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
*
12879642 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCC
838 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * **
12879703 AAAAATCCTTCCG-AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATGGTGAAAAA
1 AAAACTCCTTTCGAAAAAATTTTAAAAAAT-CCGAACCG-AAAAAGTTTCAAAAATCATGAAAAA
*
12879767 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTA
64 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** * * *
12879832 CAAGCCATAAAAATGGTGTTGGCATGCAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCT
129 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * *
12879897 AGCGATCCACCGCTTACGCATCTCGTCTCTCTGGCCGATGTAGT--------G--C-CCGCCCAC
194 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGC
* * * * *
12879951 TTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAAG
259 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGG
* ** * * * * * * * * * *
12880016 GTTGCAACAGTAGTATCGGTAGCAAGCAAAGAGGGACCTGATCGATCCCCGGATTGCGTATCCCG
324 GTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * ** * * *
12880081 CCACTCTAGCCGATTGAGTGCCCGCATGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCAT
389 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
12880146 TCCCAGTCTAAGCATACGAAGTTCATTCCCAGTATAAGATTGGACCGGACCGAGGGTTGCAGTAG
454 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGC-G--G
* * *** * * ****
12880211 CAGAATCGATAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTGTG-CATACCGCCCCTCTGG
516 CAGCA-C-AT-GC-TG-GGCTCGGG---C-AT-G-T----G-CTGGTGCCGTA---TTTTTCT--
* * * * ** * * * * * * ***
12880275 TCGGCTGAGCACCCACACGCTC--GTTTCGTGGGTTG-ACTTAGGCATACGGAGTTCATTCCCAG
560 TCGCCGGGGCA-CCA-TCG-TCGAGCATCGTCGG-AGAACCT--G-A-CCGGCG-GCATT-GGGG
** * * * ****** * ** *
12880337 TCTAAGC-ATATGGAGT-TCATTCCCAGTATAAG-ATC-GGATCG-GATCGA-GGGTTGC-GACA
615 T-TCCGCGAT-CGGGGTGGC-CGGGGGGTGTGCGCA-CATGAT-GTG--CGATGGG-TGCTG---
* * **** *** *** * *
12880395 GCACATGCTGGGCTCGGGCA-TGTGCTAGTGCTGCATTTTTCTTC--A-C-CGAGGCACCATCAT
669 GTAC-T--T-GGCCCTTATATTG-GC--CCCCT--ATCCCTCATCAAACCTCGA-G-AAC-TCA-
* *** * * * * * ** * * **
12880455 AAGAGCATCACCGGAGAACCTGACCGGCGGCA-TTGGGGTTTTGAC-GATCGGGCGGGCCGGGGG
721 CACCCCCT-----TA-AA---GA------GCATTTGAGATTTT-ACAGGT-TTGC-TGCCAGTAG
*** * * * **
12880518 GTGTGCGTACATGATGTAC-GATGAATGCTGGCACTTGGCACTTATATTGGCCCTC-TATCCCTC
768 CCAT---TA-AAG-TGT-CTGA--AATG--GG-----GACACTT-T-TT-----TCAAAT-GGTC
* ** ** * ****
12880581 ATCAAACCTCCAGAACCTACACCCCCA-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGT
810 A-CAAA-ATCTTG----TACACTTCGAGTTTTTAGC---TGA-ATTTT-----TTTG-TGC-A-T
** ** * * * ** * *
12880645 AGCCATTAAAGTGTCCGAAATGGGGA-CACTTTTTTCAA--AT-GGTCAC
857 -GCCAACAAA-AATAC--AA---GGATCACGTCTACCAAGTTTGGGGC-C
* * * *** ** *
12880691 AAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTGTTTTATGCATGCC-AACAAAAATACAATG
1 AAAA-C---T-C-CTTTCGA------A---AAAAT-TTTAAAAAAT-CCGAACCGAAA-A-AGT-
* * ** * * *
12880754 ATCACGTGAAAGATCATGAAAAGTTTCAAACCGTAAAAT-GT-TT--CA--AAA-ATCA--TGAA
46 TTCA----AAA-ATCATGAAAA-ATAGAAAACG---AGTCGTCTTGCCATGAAACTTCACGTGAA
*** * * * * * * * * * *
12880810 AAATAGAAAACGAGTCGTC-TTGCCATAAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAA
102 GGCT---TAA-GGGAC--CATTG-TAT-GAA-TTTAC---AAGCCATAA---A--AATG---GCA
** * * * * * * ** ****
12880874 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC-CACCTA-C
147 TTGGCACG-TAGAAATAT-G-A--AG-ATGT-G---CCT-AA-ACCCACCT--ACCAC-CCTATC
* * ** * * * * * ** * * ** ***
12880937 CACCCTATCAATCCATG-GCTTGCGCATCCCGTCTCTCTGGCCGGCGT-AATGCCCGCCCGCCTG
197 GATCC-A-C--GGCTTGCGCAT-CCCGTCTC-TCTGGC-CGACGTAGTGCCCGCCCGCCCGCC-G
* * * *
12881000 CACGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCCGG
254 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGA
* * * * * * ** *
12881064 CTGAGGGTTGCAGCACCAAGATCGGCAGCACGCTGAGGGGGACCCGACCGATCTTCGGCTTGCGT
318 CCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * * * *
12881129 ATCCCACCCCTCTGGCCGGCTGAGCACCCACGCACTCGTTTCATGGGTTGACTTAGGCATACGGA
383 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * ** *
12881194 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCGCAGTCTAAGATTGAACCAGACCAAGGGTTG
448 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
** * ** * *
12881259 CGGCAGTGCATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGT
513 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGT
** * * ** * *
12881324 CGGAGCATCACCAGAGAACCTGATCGGCGGCATTATGGTTCCGGGGATCGGGGGGGCCGGGGGGT
578 C-GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGTGGCCGGGGGGT
* * *
12881389 GTGCGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCATAAATTGGCCCCCTATCCCTCATCA
641 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
12881454 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
706 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
12881519 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGTTTT
771 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
12881583 TAGCTGAA-TTTTTTGTGCATGCGAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGAC
836 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
12881645 AAACCTGCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGAATAA
1 AAAACTCCTTTCGAAAAAATTTTAAAAAATC-CGAACCG-AAAAAGTTTCAAAAATCATGAAAAA
* * * * *
12881710 TAGAAAACGAGTCATCTTGCCATGAAACTTAACGTGAGGGCTTAAAGGACCATTCTATGAATTTA
64 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
12881775 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCT
129 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * **
12881840 ATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCG--C-CCGTCTAC
194 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGC
* * * * *
12881902 TCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC-AGACCCGACAGAG
259 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAG
*** * * * ** * * * * * *
12881966 GGTTGTAGTAGCAGGATTGGTAGCATACAGAGGGGGACTCGGCTGACCCCCGGCTTGCGTATCCT
323 GGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * *
12882031 GCCCCTCTGGCCAGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
388 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
12882096 TTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-CGGCA
453 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCA
* * ** * * *
12882160 ACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGGTGGGGCTCCATTGCCGGAG
518 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTC-GAG
* * * * * * *
12882225 CATCG-CTGGAGAACCTGACTGACGACATTGAGGTTTCGGCAATCGGGGTGGCGGAGGGGGGTGT
582 CATCGTC-GGAGAACCTGACCGGCGGCATTG-GGGTTCCGCGATCGGGGTGGC--CGGGGGGTGT
*
12882289 GCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
643 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
12882354 CCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
708 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
12882418 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTATACACTTCGAATTTTTA
773 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
12882483 GCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACAAAGTTTGGGGCC
838 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
12882544 AAAACTTCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAA
1 AAAACTCCTTTCGAAAAAATTTTAAAAAAT-CCGAACC-GAAAAAGTTTCAAAAATCATGAAAAA
* *
12882609 TAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTA
64 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
12882674 AAAGCCATAAAAATGGCATTGGCATC-TAGAAATATGAAGATGTACCTAAACCCAGCTACCACCC
129 CAAGCCATAAAAATGGCATTGGCA-CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
12882738 TATTGATCCACAGCTTGCACATCCCGTCTCTCTGGCCGGA-GTAGT----GCACG--C-CCGCCC
193 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCGCCGCCC
* * *
12882795 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCGAAGATC-AGACCGGACC-
257 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCG
* * * * * ** *
12882858 ATGGTTGCGGTAGAAGGATCGACAGCACATAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATC
321 AGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * *
12882923 CCACCCCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
386 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * *
12882988 CATTCCCAGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCAG
451 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGG
* * ** * * * * ** *
12883053 CAGCACATGCTTGGCCCAAGCATGTTCTGGTGCCGCATTTTTCTTCACCCGGGTGCCATCGCCGG
516 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTC-G
** ** * * * *
12883118 AGTTTCACCGGAGAACCTGACCGGCGTCATTGGGGTTCCGGGGATCGGGGGGGCCGGGGTGTGTG
580 AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GCGATCGGGGTGGCCGGGGGGTGTG
12883183 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
644 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
12883248 CTCAAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTA
709 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
12883313 AAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGTTTTTAG
774 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
12883376 TTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGAC
839 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * ** *
12883436 AAACCTGC-TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAATA
1 AAAACTCCTTTC-GAAAAAATTTTAAAAAAT-CCGAACCG-AAAAAGTTTCAAAAATCATGAAAA
* * * * * *
12883500 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAGGGCATAAAGGACCATTCTGTGAATTT
63 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
12883565 ACAAGCCATAAAAATGGCATTGGCATGTGGAAATACGAAGATGTGCCTAAACCCACCTACCACCC
128 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
12883630 TATCGATACACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCTGCCCG--C-CCGTCTG
193 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCG
* * **
12883692 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC-AGACCGGATAGA
258 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGA
*** * * *
12883756 GGGTTGTAGCAGCAGGATCAGCAGCATGCAAAGGGGGAC
322 GGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
12883795 TCGAGCATGT
Statistics
Matches: 10576, Mismatches: 1868, Indels: 1302
0.77 0.14 0.09
Matches are distributed among these distances:
850 1 0.00
851 463 0.04
852 47 0.00
853 3 0.00
855 55 0.01
856 184 0.02
857 3 0.00
858 1 0.00
859 1 0.00
860 2 0.00
862 1 0.00
870 188 0.02
871 91 0.01
872 2 0.00
873 2 0.00
874 6 0.00
875 186 0.02
876 15 0.00
877 3 0.00
878 32 0.00
879 163 0.02
880 99 0.01
881 26 0.00
882 221 0.02
883 7 0.00
884 4 0.00
885 11 0.00
886 49 0.00
887 211 0.02
888 15 0.00
889 79 0.01
890 504 0.05
891 187 0.02
892 404 0.04
893 1012 0.10
894 689 0.07
895 438 0.04
896 460 0.04
897 381 0.04
898 108 0.01
899 265 0.03
900 115 0.01
901 451 0.04
902 384 0.04
903 954 0.09
904 264 0.02
905 14 0.00
906 14 0.00
907 7 0.00
908 6 0.00
909 6 0.00
910 3 0.00
911 8 0.00
912 2 0.00
913 21 0.00
914 6 0.00
915 16 0.00
916 9 0.00
917 10 0.00
918 21 0.00
919 21 0.00
920 5 0.00
921 8 0.00
922 7 0.00
923 2 0.00
924 3 0.00
925 4 0.00
926 10 0.00
927 9 0.00
928 7 0.00
929 5 0.00
930 14 0.00
931 4 0.00
932 9 0.00
933 12 0.00
934 6 0.00
935 6 0.00
936 4 0.00
937 1 0.00
938 13 0.00
939 20 0.00
940 10 0.00
941 6 0.00
942 8 0.00
943 12 0.00
944 21 0.00
945 12 0.00
946 16 0.00
947 6 0.00
948 14 0.00
949 19 0.00
950 9 0.00
951 18 0.00
952 13 0.00
953 15 0.00
954 17 0.00
955 11 0.00
956 5 0.00
957 9 0.00
958 5 0.00
959 10 0.00
960 10 0.00
961 5 0.00
962 3 0.00
964 1 0.00
966 5 0.00
967 6 0.00
968 7 0.00
969 5 0.00
970 1 0.00
971 10 0.00
972 3 0.00
973 8 0.00
974 2 0.00
975 7 0.00
976 16 0.00
977 6 0.00
978 4 0.00
980 3 0.00
981 15 0.00
982 10 0.00
983 10 0.00
984 8 0.00
985 7 0.00
986 4 0.00
987 9 0.00
988 9 0.00
989 2 0.00
990 10 0.00
991 15 0.00
992 3 0.00
993 9 0.00
994 4 0.00
995 232 0.02
996 2 0.00
997 2 0.00
998 6 0.00
999 13 0.00
1000 12 0.00
1001 4 0.00
1002 20 0.00
1003 138 0.01
1004 19 0.00
1005 21 0.00
1006 15 0.00
1007 10 0.00
1008 19 0.00
1009 30 0.00
1010 26 0.00
1011 20 0.00
1012 9 0.00
1013 5 0.00
1014 11 0.00
1015 3 0.00
1016 12 0.00
1017 2 0.00
1018 9 0.00
1019 4 0.00
1021 4 0.00
1022 3 0.00
1024 158 0.01
1025 121 0.01
1026 120 0.01
1027 113 0.01
1028 68 0.01
1029 68 0.01
1030 101 0.01
1031 203 0.02
1032 164 0.02
1033 70 0.01
1034 104 0.01
1035 129 0.01
1036 130 0.01
1037 123 0.01
1038 187 0.02
1039 138 0.01
1040 95 0.01
1041 85 0.01
1042 62 0.01
1043 54 0.01
1044 35 0.00
1045 24 0.00
1046 14 0.00
1047 25 0.00
1048 26 0.00
1049 38 0.00
1050 21 0.00
1051 20 0.00
1052 21 0.00
1053 111 0.01
1054 468 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
AAAACTCCTTTCGAAAAAATTTTAAAAAATCCGAACCGAAAAAGTTTCAAAAATCATGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGT
TACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCA
CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGAGCATC
GTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGCGATCGGGGTGGCCGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
Found at i:12875575 original size:26 final size:26
Alignment explanation
Indices: 12875546--12875598 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12875536 GTTGACTTAG
* * *
12875546 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12875572 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
12875598 G
1 G
12875599 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12876078 original size:27 final size:27
Alignment explanation
Indices: 12876020--12876077 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
12876010 CTCCTTCTGC
* ***
12876020 AAAAAGTTTCAAAAAATCCTGAACCGT
1 AAAAAGTTTCAAAAAATCATGAAAAAT
12876047 AAAAAGTTTC-AAAAATCATGAAAAAT
1 AAAAAGTTTCAAAAAATCATGAAAAAT
12876073 AAAAA
1 AAAAA
12876078 ACGAGTCGTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.59, C:0.12, G:0.09, T:0.21
Consensus pattern (27 bp):
AAAAAGTTTCAAAAAATCATGAAAAAT
Found at i:12876477 original size:26 final size:26
Alignment explanation
Indices: 12876440--12876492 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12876430 GTTGACTTAG
12876440 GCATACGAAGTTCATTCC-AGGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
12876466 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATTCCTAGTCTAA
12876492 G
1 G
12876493 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:12877373 original size:26 final size:26
Alignment explanation
Indices: 12877344--12877396 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12877334 GTTGACTTAG
*
12877344 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12877370 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12877396 G
1 G
12877397 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12878291 original size:101 final size:101
Alignment explanation
Indices: 12878114--12878309 Score: 239
Period size: 101 Copynumber: 1.9 Consensus size: 101
12878104 AGATCGGATC
* * * * * * *
12878114 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACTCGATCGATCCCCAATTTGC
1 GACCGAGGGTTGTGACAGCAGGATCAACAGCACGCAGAGGGGGACCCGACCGATCCCCAACTTAC
* **
12878179 ACATCCCGCCCCTCTGGCTGGCTGAGCGCCTACACG
66 ACATCACGCCCCTCTGGCCAGCTGAGCGCCTACACG
* * * *
12878215 GACCGAGGGTTGTGACAGTAGGATCAACAGCACGCAGCGGGGGACCCGACCGATTCCCGACTTAC
1 GACCGAGGGTTGTGACAGCAGGATCAACAGCACGCAGAGGGGGACCCGACCGATCCCCAACTTAC
* * *
12878280 GCATTATGCCCCTCTGGCCAGCTGAGCGCC
66 ACATCACGCCCCTCTGGCCAGCTGAGCGCC
12878310 CGTACGCTCG
Statistics
Matches: 78, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
101 78 1.00
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.16
Consensus pattern (101 bp):
GACCGAGGGTTGTGACAGCAGGATCAACAGCACGCAGAGGGGGACCCGACCGATCCCCAACTTAC
ACATCACGCCCCTCTGGCCAGCTGAGCGCCTACACG
Found at i:12878367 original size:26 final size:26
Alignment explanation
Indices: 12878338--12878387 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12878328 GTTGACTTAG
*
12878338 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGAAGTTCATTCCCAGTCTCA
12878364 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
12878388 AAGATCAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTCA
Found at i:12879277 original size:26 final size:26
Alignment explanation
Indices: 12879241--12879293 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12879231 GTTGACTTAG
12879241 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12879267 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12879293 G
1 G
12879294 ACCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12880160 original size:26 final size:26
Alignment explanation
Indices: 12880131--12880183 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12880121 GTTGACTTAG
* *
12880131 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
12880157 GCATACGAAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
12880183 G
1 G
12880184 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:12880299 original size:185 final size:185
Alignment explanation
Indices: 12879972--12880397 Score: 557
Period size: 185 Copynumber: 2.3 Consensus size: 185
12879962 GTTGGCTTAG
* * * * * *
12879972 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAAGGTTGCAACAGTAGTATCGGTA
1 GCATACGGAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTGCAACAGCAGAATCGATA
* * * * **
12880037 GCAAGCAAAGAGGGACCTGATCGATCCCCGGATTGCGTATCCCGCCACTCTAGCCGATTGAGTGC
66 GCAAGCAAAGAGGGACCCGATCGATCCCCGGATTGCGCATACCGCCACTCTAGCCGACTGAGCAC
* * *
12880102 CCGCATGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 CCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
12880157 GCATACGAAGTTCATTCCCAGTATAAGATTGGACCGGACCGAGGGTTGCAGTAGCAGAATCGATA
1 GCATACGGAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTGCAACAGCAGAATCGATA
* * * * * * * *
12880222 GCATGCAGAGGGGGACCCGATCGATCCCC-GACTTGTGCATACCGCCCCTCTGGTCGGCTGAGCA
66 GCAAGCAAAGAGGGACCCGATCGATCCCCGGA-TTGCGCATACCGCCACTCTAGCCGACTGAGCA
12880286 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12880342 GCATATGGAGTTCATTCCCAGTATAAGATCGGATCGGATCGAGGGTTGCGACAGCA
1 GCATACGGAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTGCAACAGCA
12880398 CATGCTGGGC
Statistics
Matches: 205, Mismatches: 35, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
184 2 0.01
185 203 0.99
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTGCAACAGCAGAATCGATA
GCAAGCAAAGAGGGACCCGATCGATCCCCGGATTGCGCATACCGCCACTCTAGCCGACTGAGCAC
CCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12880352 original size:26 final size:26
Alignment explanation
Indices: 12880316--12880368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12880306 GTTGACTTAG
*
12880316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
12880342 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
12880368 G
1 G
12880369 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:12881215 original size:26 final size:26
Alignment explanation
Indices: 12881185--12881237 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12881175 GTTGACTTAG
*
12881185 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12881211 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12881237 G
1 G
12881238 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12882118 original size:26 final size:26
Alignment explanation
Indices: 12882082--12882134 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12882072 GTTGACTTAG
* *
12882082 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12882108 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12882134 G
1 G
12882135 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12883627 original size:892 final size:894
Alignment explanation
Indices: 12880782--12883781 Score: 4268
Period size: 897 Copynumber: 3.3 Consensus size: 894
12880772 AAAAGTTTCA
* * * *
12880782 AACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACG
1 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
* *
12880847 TGAAGGCTT-AAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
66 TGAAGGCTTAAAG-GACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
* *
12880911 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTG
130 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
12880976 GCCGGCGTAATGCCCGCCCGCCTGCACGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
195 GCCGGAGTAGTGCCCGCCCGCC--CACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
12881041 TCCCAGTCTAAGATCAGACCCGG-CTGAGGGTTGCAGCACCAA-GATCGGCAGCACGCT-GAGGG
258 TCCCAATCTAAGATCAGA-CCGGACAGAGGGTTGCAGTA-GAAGGATCGGCAGCAC-ATAGAGGG
* ** *
12881103 GGACCCGACCGATCTTCGGCTTGCGTATCCCACCCCTCTGGCCGGCTGAGCACCCACGCACTCGT
320 GGACCCGACTGATCCCCGGCTTGCGTATCCCACCCCTCTGGCCGGCTGAGCACCCACACACTCGT
* * *
12881168 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCGCAGT
385 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * **
12881233 CTAAGAT-TGAACC-AGACCAAGGGTTGCGGCAGTGCATGCTGGGCTCGAGCATGTGCTGGTGCC
450 CTAAGATCAG-ACCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
* * * * * *
12881296 ACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCACCAGAGAACCTGATCGGCGGCATT-AT
513 GCATTTTTCTTCACCG-GG-TCCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGA-
*
12881360 GGTTCCGGGGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTACTTGG
575 GGTTCCGGGGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
12881425 CCCATAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
640 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
12881490 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
705 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
*
12881555 GTCACAAAATCTTGTACACTTCAGTTTTTAGCTGAA-TTTTTTGTGCATGCGAACAAAAATACAA
770 GTCACAAAATCTTGTACACTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
*
12881619 GGATCATGTCTACCAAGTTTGGGGACAAACCTGCTTCCGAAAAAATTTTAAAAAATCTCG
835 GGATCATGTCTACCAAGTTTGGGGACAAACCTGCTTCCGAAAAAATTTTAAAAAATCCCG
* * * *
12881679 AACCGTAAAAAGTTTCAAAAATTATGAATAATAGAAAACGAGTCATCTTGCCATGAAACTTAACG
1 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
*
12881744 TGAGGGCTTAAAGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
66 TGAAGGCTTAAAGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
* *
12881809 TAAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGG
131 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
12881874 TC-GACGTAGTGCCCGCCCGCCCGTCTACTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCAT
196 CCGGA-GTAGTGCCCGCCCGCCC-AC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
12881938 TCCCAATCTAAGATCAGACCCGACAGAGGGTTGTAGTAGCAGGATTGGTAGCATACAGAGGGGGA
258 TCCCAATCTAAGATCAGACCGGACAGAGGGTTGCAGTAGAAGGATCGGCAGCACATAGAGGGGGA
* * * ** * * *
12882003 CTCGGCTGACCCCCGGCTTGCGTATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACACTCGTTTC
323 CCCGACTGATCCCCGGCTTGCGTATCCCACCCCTCTGGCCGGCTGAGCACCCACACACTCGTTTC
* *
12882068 GTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
388 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
12882133 AGATCGGACCGGACCGAGGGTT-CGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
453 AGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATT
*** * * * * * *
12882197 TTTCTTCGGTGGGGCTCCATTGCCGGAGCATCGCTGGAGAACCTGACTGACGACATTGAGGTTTC
518 TTTCTTC-ACCGGG-TCCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGAGGTTCC
** ** *
12882262 GGCAATCGGGGTGGCGGAGGGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCT
581 GGGGATCGGGG-GG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
12882327 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGAT
644 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
12882391 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
709 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
12882456 GAAAATCTTATACACTTCGAATTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
774 CAAAATCTTGTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
** * * * * *
12882521 TCACATCTACAAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCA
838 TCATGTCTACCAAGTTTGGGGACAAACCTGCTTCCGAAAAAATTTTAAAAAATCCCG
* * *
12882578 AACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACG
1 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
* * * * *
12882643 TGAAGGCTTAAGGGACCATTGTGTGAATTTAAAAGCCATAAAAATGGCATTGGCATCTAGAAATA
66 TGAAGGCTTAAAGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
* * * * *
12882708 TGAAGATGTACCTAAACCCAGCTACCACCCTATTGATCCACAGCTTGCACATCCCGTCTCTCTGG
131 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* *
12882773 CCGGAGTAGTGCACGCCCG-CC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC
196 CCGGAGTAGTGCCCGCCCGCCCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
12882836 CAGTCGAAGATCAGACCGGAC-CATGGTTGCGGTAGAAGGATCGACAGCACATAGAGGGGGACCC
261 CAATCTAAGATCAGACCGGACAGAGGGTTGCAGTAGAAGGATCGGCAGCACATAGAGGGGGACCC
* * *
12882900 GACTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCGTG
326 GACTGATCCCCGGCTTGCGTATCCCACCCCTCTGGCCGGCTGAGCACCCACACACTCGTTTCGTG
* *
12882965 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGA
391 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
12883030 TCAGACCGAACCGAGGGTTGCAGCAGCACATGCTTGGCCCAAGCATGTTCTGGTGCCGCATTTTT
456 TCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
** * *
12883095 CTTCACCCGGGTGCCATCGCCGGAGTTTCACCGGAGAACCTGACCGGCGTCATTGGGGTTCCGGG
521 CTTCA-CCGGGT-CCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGAGGTTCCGGG
*
12883160 GATCGGGGGGGCCGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
584 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
12883225 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTAC
649 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
12883290 AGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAA
714 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
12883354 TCTTGTACACTTCAGTTTTTAGTTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGT
779 TCTTGTACACTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
*
12883419 CTACCAAGTTTGGGGACAAACCTGCTTCTGAAAAAATTTTAAAAAATCCCG
844 CTACCAAGTTTGGGGACAAACCTGCTTCCGAAAAAATTTTAAAAAATCCCG
** *
12883470 AACCGCAAAAAGTTTCAAAAATTGTGAATAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
1 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
* * * *
12883535 TGAGGGCATAAAGGACCATTCTGTGAATTTACAAGCCATAAAAATGGCATTGGCATGTGGAAATA
66 TGAAGGCTTAAAGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
* *
12883600 CGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGG
131 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
12883665 TCGGCA-TAGTGCCTGCCCGCCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
196 CCGG-AGTAGTGCCCGCCCGCCC-AC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
12883729 TCCCAATCTAAGATCAGACCGGATAGAGGGTTGTAGCAGCAGGATCAGCAGCA
258 TCCCAATCTAAGATCAGACCGGACAGAGGGTTGCAGTAGAAGGATCGGCAGCA
12883782 TGCAAAGGGG
Statistics
Matches: 1848, Mismatches: 229, Indels: 52
0.87 0.11 0.02
Matches are distributed among these distances:
892 280 0.15
893 121 0.07
894 236 0.13
895 150 0.08
896 158 0.09
897 530 0.29
898 103 0.06
899 268 0.15
900 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
TGAAGGCTTAAAGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGAGTAGTGCCCGCCCGCCCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAATCTAAGATCAGACCGGACAGAGGGTTGCAGTAGAAGGATCGGCAGCACATAGAGGGGGACCC
GACTGATCCCCGGCTTGCGTATCCCACCCCTCTGGCCGGCTGAGCACCCACACACTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
CTTCACCGGGTCCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGAGGTTCCGGGGA
TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
ACCAAGTTTGGGGACAAACCTGCTTCCGAAAAAATTTTAAAAAATCCCG
Found at i:12884310 original size:730 final size:729
Alignment explanation
Indices: 12883071--12884496 Score: 2147
Period size: 730 Copynumber: 2.0 Consensus size: 729
12883061 GCTTGGCCCA
* **
12883071 AGCATGTTCTGGTGCCGCATTTTTCTTCACCCGGGTGCCATCGCCGGAGTTTCACCGGAGAACCT
1 AGCATGTGCTGGTGCCGCATTTTTCTTCACCCGGGTGCCATCGCCGGAGCATCACCGGAGAACCT
* * * ** * *
12883136 GACCGGCGTCATTGGGGTTCCGGGGATCGGGGGGGCCGGGGTGTGTGCGCACATGATGTGCGATG
66 GACCGACGGCATTGAGGTTCCGGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATA
12883201 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
131 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
*
12883266 CTTGAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
196 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
12883331 CACTTTTTCAAATGGTCACAAAATCTTGTACACTTCAGTTTTTAGTTGAATTTTTTTGTGCAAGC
261 CACTTTTTCAAATGGTCACAAAATCTTGTACACTTCAGTTTTTAGCTGAATTTTTTTATGCAAGC
* * * *
12883396 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAACCTGCTTCTGAAAAAATTTTAA
326 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCTGAAAAAATTTTAA
* * *
12883461 AAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAATAATAGAAAACGAGTCATCTTGCCATGA
391 AAAATCCCGAACCGCAAAAAGATTCAAAAATGGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
** * * *
12883526 AACTTCACGTGAGGGCATAAAGGACCATTCTGTGAATTTACAAGCCATAAAAATGGCATTGGCAT
456 AACTTCACAAGAAGGCATAAAGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*** *
12883591 GTGGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCG
521 ACAGAAATACGAAGATGTGCCTAAACCAACCTACCACCCTATCGATACACGGCTTGCGCATCCCG
* * * * * *
12883656 TCTCTCTGGTCGGCATAGTGCCTGCCCG-C-CCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATA
586 TCTCTCTAGCCGACATAGTGCCCGCCCGCCACCGACCGCTCGTTTCGTCGGTTGGCTTAGGCATA
*
12883719 CGGAGTTCATTCCCAATCTAAGATCAGACCGGATAGAGGGTTGTAGCAGCAGGATCAGCAGCATG
651 CGGAGTTCATTCCCAATCTAAGATCAGACCGGACAGAGGGTTGTAGCAGCAGGATCAGCAGCATG
12883784 CAAAGGGGGACTCG
716 CAAAGGGGGACTCG
** * * * *
12883798 AGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCT-CCATTGCCGGAGCATCGCTGGAGAACC
1 AGCATGTGCTGGTGCCGCATTTTTCTTCACCCGGG-TGCCATCGCCGGAGCATCACCGGAGAACC
* * *
12883862 TGACTGACGGCATTGAGGTTCCGGCAATCGGGGTGGCGGGGGGGGTGTGCGCACATGATGTGCGA
65 TGACCGACGGCATTGAGGTTCCGGCAATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGA
* *
12883927 TAGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACC
129 TAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
*
12883992 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
194 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGG
*
12884057 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGC
259 GACAC-TTTTTCAAATGGTCACAAAATCTTGTACAC-TTCAGTTTTTAGCTGAATTTTTTTATGC
* * * *
12884122 ATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAATTCCTTCTGAAAAAATT
322 AAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCTGAAAAAATT
* * * *
12884187 TTAAAAAATCCTGAACCGTAAAAAGATTCAAAAGTGGTGAAAAATAGAAAACGAGTCGTCTTGCC
387 TTAAAAAATCCCGAACCGCAAAAAGATTCAAAAATGGTGAAAAATAGAAAACGAGTCATCTTGCC
* * *
12884252 ATGAAACTTCACAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
452 ATGAAACTTCACAAGAAGGCATAAAGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
12884317 GCGCACAGAAATATGAAGATGTGCTTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCAT
517 GCACACAGAAATACGAAGATGTGCCTAAACCAACCTACCACCCTATCGATACACGGCTTGCGCAT
*
12884382 CCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGACCGACCGCTCGTTTCGTCGGTTGGCTTA
582 CCCGTCTCTCTAGCCGACATAGTGCCCGCCCG-CC-ACCGACCGCTCGTTTCGTCGGTTGGCTTA
* * ** *
12884447 GGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGT
645 GGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACAGAGGGTTGT
12884497 GGAAGTAGGA
Statistics
Matches: 621, Mismatches: 70, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
727 83 0.13
728 156 0.25
729 30 0.05
730 281 0.45
732 1 0.00
734 70 0.11
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (729 bp):
AGCATGTGCTGGTGCCGCATTTTTCTTCACCCGGGTGCCATCGCCGGAGCATCACCGGAGAACCT
GACCGACGGCATTGAGGTTCCGGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATA
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTCAAATGGTCACAAAATCTTGTACACTTCAGTTTTTAGCTGAATTTTTTTATGCAAGC
CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCTGAAAAAATTTTAA
AAAATCCCGAACCGCAAAAAGATTCAAAAATGGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
AACTTCACAAGAAGGCATAAAGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAGAAATACGAAGATGTGCCTAAACCAACCTACCACCCTATCGATACACGGCTTGCGCATCCCG
TCTCTCTAGCCGACATAGTGCCCGCCCGCCACCGACCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAATCTAAGATCAGACCGGACAGAGGGTTGTAGCAGCAGGATCAGCAGCATG
CAAAGGGGGACTCG
Found at i:12886372 original size:26 final size:26
Alignment explanation
Indices: 12886336--12886388 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12886326 GTTGACTTAG
*
12886336 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12886362 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12886388 G
1 G
12886389 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12887843 original size:26 final size:26
Alignment explanation
Indices: 12887806--12887857 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12887796 CGATCTGATT
12887806 TTAGACTAGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
* *
12887832 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
12887858 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:12894961 original size:26 final size:26
Alignment explanation
Indices: 12894932--12894984 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12894922 CCAGTCCGAT
*
12894932 CTTAGA-AGGGGAATGAACTCCGTATG
1 CTTAGACA-GGGAATGAACTCCATATG
12894958 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
12894984 C
1 C
12894985 ATAAGTGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:12896742 original size:26 final size:26
Alignment explanation
Indices: 12896713--12896765 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12896703 CCGATCCGAT
*
12896713 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
12896739 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
12896765 C
1 C
12896766 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:12900281 original size:26 final size:26
Alignment explanation
Indices: 12900252--12900304 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12900242 CCGGTCCGAT
12900252 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12900278 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12900304 C
1 C
12900305 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12901148 original size:896 final size:898
Alignment explanation
Indices: 12895836--12920982 Score: 23463
Period size: 895 Copynumber: 28.1 Consensus size: 898
12895826 AGTCTGATCC
* *
12895836 TAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * ** * **
12895901 GCCAGAGGGGCGGGATGCGCAAGTCAAGGATCGACCGGGTCTCGTTCTACGTGTTGCCAATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* * * *
12895966 CTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
131 CTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
12896031 GACGGAACGAGCGAGCGGGCGGGCGGTCGGGCGGAC-ACCACGTCGG-CAGAAAGATGGGATGCG
196 GAC-GAA--A-CGAGCAGGCGGGCGGGCGGGC--ACTA-CGC-T-GGCCAGAGAGACGGGATGCG
* * * **
12896094 CAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTTTGTGTGCCAATG
252 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
12896159 CCATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
317 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* **
12896224 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-AGGATTTTTTAAAATT
382 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATT
* * * *
12896288 TTTTTGGAAGGCGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT
446 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
12896353 AAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
511 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
12896418 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTACGGGGGTG
576 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
12896483 TGAGTTCTCGAGGTTTGATAAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
641 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * * * * * ** *
12896548 ACTTCATCTGCACACACCCCTCGGCCCTCCGATCGTCGAAACCCAAATGCCGCCAATCAAGTTCT
706 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
* ** * * * * *
12896613 CCGACAATGCTTAGTCGATAGTGCCCCGACGAAGAAAAATATGGCACTAGCACATGCCCGAGCCC
771 CCGACGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* * * * *
12896678 AGCATGTG-AGATCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
836 AGCATGTGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
12896741 TAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
12896806 GCTAGAGGGGTGGGATGCGCAAGCC-GGGATCCACCGGGTCCCCCTCTACGTGCTGCTCATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* ** * * ** * * *
12896870 CTACCTAAACCCTT-AGTCTGGTCCAATCTTAGACTAGAAATGAACTCTC-TATGCCTAAGACAA
131 CTGCCGCAACCCTTGA-TCCGATCTGATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAA
* ** * * * *
12896933 CCGACGTAACGAGTGGGTGGGTGGGCGGACGGGCACTACGCCGGCCAGGGAGACGGGATGCGCAA
194 CCGACGAAACGA----GCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* * * * ***
12896998 GCCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATATTTATATTTCTATTTGCCAATGCCA
255 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
12897063 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAT
320 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
12897128 GACTCGTTTTCTATTTTTCACGATTTTCGAAACCTTTTACGGTTTGAGATTTTTTTAAATTTTTT
385 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
12897193 CGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGAT-CTTGTA-TTTTGTTGGCATGCA-TAAA
450 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
12897255 AAATTCAGCTAAAAAC-CTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTT
515 AAATTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
12897319 CAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
12897384 GTTCACGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
12897449 TCATGTGCGCATACCCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCCGGTTCTT
709 TCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC-T
* * * *
12897514 CCGACGATGCTCCGACAATGGTGCCCCGACGAAGAAAAATGTGGCACTAGCACATGCCTGAGCCC
771 CCGACGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* *** * * * ***
12897579 AGCATGTGCTGCCGCAACCCTCGGTCTAATCTGATGTTACACTAACAATGAACTCCGTATGCT
836 AGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
*
12897642 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-CGAGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
12897706 GCCAAAGGGGCGGGATGCGCAAGTCGGGGATCG-GCGGGT-CCCTTCTGCGTGCTGCCGATCTTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* * * * * * * *
12897769 CTACCACAACCCTCGGTCTGGTCTGATCTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAACC
131 CTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
12897834 GACGAAAC--G-A-----GTGGGCGGGCACTAAGCCGGCCAGAGAGACGAGATGCGCAAGCCGTG
196 GACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
12897891 GATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCCATTTTTA
261 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
12897956 TGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGATGACTCG
326 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * * * *
12898021 TTTTCTATTTTTCACAAATTTTCAAACTTTTTACGATTCGAGATTTTTTTAAATTTTTTCGGAAG
391 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* *
12898086 GAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTC
456 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
12898151 AGCTAATAAA-TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACA
521 AGCTAA-AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
12898215 TTTTAATTGCTACTGGTAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
585 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * ** * * * * *
12898280 GAGGTTTGATCAGGGATAGAGGGCCAATATAATTGCCAATTTCCAACACCCATCCCATATCATGT
650 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * * **
12898345 TCACACACCCCCCCGGCCCCCCCAATCGTCGAAATCCCAATGTCGTCGGTCAGGTTCTCCGGTGA
715 GCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * * ** * * * **
12898410 TGCTCCGGCAATGGTGCCCCGACAAAGAAAAATACGGTACCAACACATGTCCGAGCGTAGCATGT
778 TGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
** * * * * * *
12898475 GCTGCCACAACCCTCGGTCTGGTCTGATCTAAAACTGGGAATGAATTTCGTATGCT
843 GCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
*
12898531 TAGACTGGGAATG-ACGT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
1 TAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * ** * *
12898594 AGCCAGAAGGGTGAGATGAGCAAGCCGGGGATCGACTGGGTCCACCTCTGTGTGCTGCCGATCTT
65 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCT
* * * *
12898659 GCTACCGCAACCCTCAGTTCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 GCTGCCGCAACCCT-TGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
12898723 CCGACAAAACGAACGGGCGGGCGGGCGGACGGGCACAATG-TCGGCCAGAGACACAGGATGCGGA
194 CCGACGAAACG-A---GCAGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCA
* * *
12898787 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTACCAATGCC
254 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
12898852 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
319 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** *
12898917 CGACTCATTTTCTACTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTGTAAAATTTTT
384 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * ** * *
12898982 TCAG-AGGGGTTTTGGCCCCAAACTTTTTAGATGTGATCCTTGTATTTTTGTTGGCCTGCACAAA
449 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
12899046 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
514 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
12899111 CACACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGCGTGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
12899176 GTTCTTGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACC-G--------GCAC-
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
12899231 CCA--T-CGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
709 TCATGTGCGCACACCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
** * * ** * *
12899293 GGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGTACATGCCCGAGCCCAA
773 GACGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC-A
* *
12899358 G-ATGTACTGCCGCAA-CC-C--T-C-G---G---TT---C---G---G---TCCG-AT-CT
837 GCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * *
12899393 TAGACTTGGAATGAACTCC-AATGCCTAAGTCAACCCATGAAACGAGCGTCCGAGCGCTCAACCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * ** * * * * *
12899457 ACTAGAAGGGCGGGATGCATAAGCCAGAGATCGACCGGGTCCCCCTTTATGTGCT-ATCGATCCT
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCT-GATCCT
** * * * * * * *
12899521 AATGTCGCAACCCTCTG-TTCTATCTGATCTTAGACTGGGGATGAACTACGTAAGGCTAAGCCAA
130 GCTGCCGCAACCCT-TGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
12899585 CCGACGAAAC-A--A-----GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
194 CCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCG
* ** * **
12899642 TGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCGAATGATATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * *
12899707 TATGGCTTGTAAATTCATCCAATGCTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGATGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * *
12899772 CGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGA
389 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * *
12899836 AGGAGTTTTGGGCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
12899901 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAG-C
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
12899965 GACTTTAATGGCTACTTGCAGTAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 -ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
12900030 TTGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** * * *
12900094 GTGCGTACACCCCCCAACCCCCCCGATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATG
713 GTGCGCACACCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * *
12900159 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATG-CCTAGCCCAGCATG
777 ATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
12900223 AGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
842 TGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
12900280 TAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAACGTGCGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * **
12900345 GCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCAGGTCACCCTCTTTGTGCTGCTGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* * ** *
12900410 TTGCTGCAACCCTTGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATC
131 CTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
*
12900475 GACGAAACGAGCAGGCGGGCGGGCGGGCACCACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTG
196 GACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * **
12900540 GATTGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
261 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
12900605 TGG-TATGTAAATTCAGACAATGGTCCCTTAAGCCTTTAAGTGAAGTTTCATGGCAAGACGACTC
326 TGGCT-TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
12900669 GTTTTCTATTTTTCACGATTTTTGAAACCTTTTACAGTTCGAGATTTTTT-AAATTTTTTCGGAA
390 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
*
12900733 GGAGTTTGTGGCCCCAAACTTGGTAGACGTGAT-CTTGTATTTTTGTTGGCATGCA-TAAAAAAT
455 GGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
**
12900796 TCAGCTAAAAAC-CTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTACCCCCATTTCAGA
519 TCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
12900860 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
** * * * * *
12900925 TCGAGGTTTGATGAGAAATACGGGACCAATATAAGAGCCATGTACCAGCACCCATCGCACAACAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
12900990 GTGCGCACACCCCCCGGACCCCCGATCACCGGAACCCAAATACCGTCGGTCAGGTTCTCCGATGA
713 GTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * ** * *
12901055 TGCTCTGACGATGGTGCACCAG-CGAAGAAAAATATAGTGCCAACACATGCCCGAGCCCAGTATG
778 TGCTCCGACGATGGTGC-CCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * ** *
12901119 TGTTGCTGTAACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATACCGACCA
842 TGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT---G--CT
* * * * * ** * * *** * *
12901181 AAGGGGC-GGG-ATGCGTAAGC-CGGGGAT-CGGTCGGGTCACCCTCTATGTGCTGTCGATCTTG
1 TA--GACTGGGAAT--G-AA-CTC-CGTATGC-CT-AAGTCAACC-C-A--CG-AAACGAGCGTG
* * ***
12901242 TCGGCGCAACCCTCGGTCCGGTCGGATCTTAGACTGGGATTGAACTCCATATGC-CTAAGCCTAC
52 -CGG-G---CGCTCAG-CCGG-C----C--AGA--GGG---G----CGGGATGCGC-AAG----C
* * * * * * * * * ** * * * *
12901306 CGACGAAACGAGCGGG-CGGCCGGGCACTACG-CCGGCCAGAGAGACGGATTAG-CG-AGCCGTT
90 CG-GGGATCGACCGGGTC--CC--CCTCTACGTGCTG-C--TGATCCTG-CT-GCCGCAACCCTT
** * ** * * * * * ** * * ** *
12901367 GAT-CGATAGGGTAGTAG-GTGGGTTTAGGCACATCTTCATATTTCT--G-CATCCGAATGCCAT
145 GATCCGATCTGATCTTAGACTGGG--AATG-A-A-CTCCGTATGCCTAAGCCAACCG-ACGAAAC
**** ** ****** ** ** * *** * * * *
12901427 TTTTATGGC--TTGTAAATTCA-TACAATGGTCCCTTA-AGCCTTCACGTG-AAGTTTCATGGCA
204 GAGCA-GGCGGGCGGGCGGGCACTACGCTGG--CCAGAGAGACGGGATGCGCAAG--CCGTGG-A
* * ** ** *** ** * * * *** **
12901487 -AGACA-ACTGGT-TTTCTATTT-TTCACAATTTTCAAAACTTTTTGC--G-GTTTGGGA--TTT
263 TCGATAGGGTGGTAGGTGGGTTTAGGCAC-ATCTTC-ATA-TTTCTGCATGCCAATGCCATTTTT
* ** * * ** * * *
12901543 -T---TT-AAAATTTTTTCGGAAGGAGT---TTTGGCC--C-C---AA---ACTTGG-TAGACGT
325 ATGGCTTGTAAATTCATAC--AATG-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC--
* * * * ****** **** *
12901590 GA-TCCTTGTATTTTTGTTACCATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATT
385 GACTCGTTTTCTATTT-TT--CATG-ATTTTTGAA---A-CTTTTTA--CG--GT-T-CGAGATT
* ** * ** * ***
12901654 TTGTGACCA---TTT-GAAAAAAG---TGTCCCC--A-TT--TCAGAC---A--CTT-TAATGGC
436 TT-TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGT-ATTTT
** * *** *** * * ** *
12901701 TACTGGCA-ACAAACCTGTAAAATCTCAAATGCTCTTTAA--GGGAGTGTGAGTTCTCGAGGTTT
498 TGTTGGCATGC--A-CAAAAAAAT-TC--A-GCT-AAAAACTCGAAGTGT-A---CAAGA-TTTT
** * * * ** * *
12901763 GATGAGGGA-TAGAGGGCCAATATAAG-G-GCCAAGTACCAGCACCCATCGCACATCAAGTGCGC
550 G-TGA-CCATTTGA-----AA-A-AAGTGTCCCCA-TTTCAG-----A---CACTTTAA-TG-GC
* *** * ** * * * ***
12901825 ACACCCCCCGGC-CCCCCGATCACCGAAA-CCCCAATGC-C----A-CCAGT-T-AGGTTCTCCG
595 -TA-CTGGCAGCAAACCTG-T-A---AAATCTCAAATGCTCTTTAAGGGGGTGTGA-GTTCT-CG
* * *** * * * * * * * * *
12901880 ACGATTG-TGCCCCG--A-----CGAAGAAAAGTG-C-GGCACCAGCACATGCC-TGAGCCCAGC
651 AGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC---CCAT-CGCACATC
* ****** *** * * ** * * * *
12901934 ATGTGCTGCCGCAATGTTTGGTCTGGTCCAATCTTAGACTGGGAA--TGAACT-TCGTATGCTTA
711 ATGTGC-G-CACACCCCCCGG-C-CCCCCGATC---G-C-CGGAACCCCAA-TGCCGT-CGGTCA
* ** ** ** * * ** * * *** *
12901996 -GAT-TGGGA--ATGAACAAACG-TGCGGGCGGTCA-ACCG--GCCAGA-GGGGCGGGATGCATA
765 GGTTCTCCGACGATGCTCCGACGATG-GTGC--CCAGA-CGAAGAAAAATGTGGCACCA-GCA-C
* * * * * * * * * * * *
12902052 AT--CCGAG--GA-TAGGT-CGGGT-C-CCCCTATGCGTGCTGT-CGATCCT-G-CTGCTGCAAC
824 ATGCCCGAGCCCAGCATGTGCTGCTGCAACCCT-CG-GTCCGGTCCGATCTTAGACTG--GGAAT
*** *
12902106 CCTCGGTCCAGTCTGATCT
885 GAAC--TCC-GTATG--CT
* * * * * * *
12902125 TAGACTGGGACTAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGAGCGTTCAGCCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
12902190 GCCAGAGGGGCGGAATGCGCAAGCTGGGGATCAACTGGGTCCCCCTATGCGTGCTGCTGATCTTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* * * * * * *
12902255 CTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACT
131 CTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
12902320 GACAAAATGA--A--AGGGCGGGCGGGCACTACG-TCGGCCAGAGAGACGAGATGCACAAGCCAT
196 GACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGT
*
12902380 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
12902445 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACATGAAGTTTCATGGCAGGACGACTC
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
12902510 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGATTCGGGA-TTTTTAAAATTTTTTCGAAA
390 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* *
12902574 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAACATT
455 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
12902639 CACCTAAAAAATAGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACA
520 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
12902704 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTC
585 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
12902769 AAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
650 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
12902834 GCGCACACCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-CGAGTGA
715 GCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGA
* * * *
12902898 TGCTCC-AGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGATCCCAGCATG
778 TGCTCCGA-CGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * *
12902962 TGC-GGTCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCG
842 TGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
12903019 TAGACTGGGAATGAACTCCGTATGCCT-A-TCAATCCACGAAACGAGTGTGCGTGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * **
12903082 GCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* * * * *
12903147 TTGCTGCAACCC-TCAGTCC-AGTCTGATCTTAGATTGGGAATGAACTCCATATGCCGT-AGCCA
131 CTGCCGCAACCCTTGA-TCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCC-TAAGCCA
* * * *
12903209 GCCGACGAAACAAGC-GGACGGGCAGGCGGGCACTACG-TCGGCCAGAGAGACGGGATGTGCAAG
193 ACCGACGAAACGAGCAGG-CGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAG
* * *
12903272 CCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTGATATTTCTACATGCCAATGCCAT
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
12903337 TTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTGATGGCAAGACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** * * *
12903402 ACTCGGTTTCTATTTTTCATGATTTTCAAAACCTTCTATGGTTC-AGGATTTTTTAAAATTTTTT
386 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT
* *
12903466 TGTAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
450 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
12903531 AAATTCAGCTAAAAAATCGAAGTGTACAGGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTC
515 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
12903596 AGACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * ** * *
12903661 TTCTCAAGGTTTGATGAGGGATAGGAGGCTGATATAAGGGCCAACTACCAGCACCCATCACACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
12903726 CATGTGCGCATACCCCCCCGACCCCCTGATTGCCGGAACCCCAATGCCG-CAGGTTAGGCTCTCC
710 CATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCC
* * * ** * *
12903790 TG-TGATGCTCCGACGATGGAGCCCCGGTGAAGAAAAATGTGGCACCAACACATGCCCGAGCCTA
773 -GACGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * * ** * *
12903854 GCATTTGCTACCGAAACCCTCAATCCAGTCCGATCTTAGA-TGGGGAATGAACTTCGTATGCT
837 GCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCT
* * * * *
12903916 TAAACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCGTGTGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
12903981 GCCAGAGGGGCGAGATGTGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGA-GTACTGCCGATCCT
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT-ACGTGCTGCTGATCCT
* * ** * * *
12904045 GCTGCCGCAACCCTAGGTCC-AGTCCAATCATAGACTGGGAATGAACTCCGCATGCCGAAGCCAA
130 GCTGCCGCAACCCTTGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
12904109 CTGACGAAAC--G-A-GCGGGCGGGCGAGCACTATGCCGGCCAGAGAGACGAGATGCGCAAGCCG
194 CCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCG
* * * **
12904170 TGGGTCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTATGTGTGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
12904235 TATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * * *
12904300 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGTA
389 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
*
12904365 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
12904429 TCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCAATTCAGAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
12904494 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
12904559 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
12904624 TGCGCATA-----C--CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-AGCGA
714 TGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGA
** * ** * ** *
12904681 TGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCTTGAGCCCAACATGT
778 TGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
* *
12904746 GCTGCCGGAA-CC-C--T-C-G---G-TC-----C-----A-G---TCCG-AT-CT
843 GCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * *
12904776 TATACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACAAAACGAGCGTGCGTGTGCTCAACCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
12904841 ACCAGAGGGGCGGGATGTGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* ** * ** * * *
12904906 CTGCCGTAACCCTCAATCCGGTCCAATCTTAAACTGGGAATGAACTCCGTATG-CGAAGCTAACC
131 CTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
12904970 GACGAAACGAGCGGGTGGATGGGCGGGCGGGCACTACGCCGACCAGAAAGACGGGATGCGCAAGC
196 GACGAAACGAGC---AGG-CGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGC
* ***
12905035 CGTGGATCGATAGGGTGGTAGATGGGTTTCA-GCACATCTTCATATTTCTATGTGCCAATGCCAT
257 CGTGGATCGATAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
12905099 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** ** * *
12905164 ACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAGATTTTTTC
386 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * * *
12905229 GAAAGGAGTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTCTATTTTTGTTGGCGTGCACAAAAA
451 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
12905294 AGTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
12905359 GACACTTTAATGGCTACTCGCAGCAAACCCGTAAAATCTCAAATGCACTTTAAGGGGGTGAGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
12905424 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATC
646 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
12905489 ATGTGTGCACACCCCCCCCGGCCCTCTCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCC
711 ATGTGCGCACA--CCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* ** * * *
12905554 GATGATGCTCCGGTGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
773 GACGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
* * *
12905619 GATGTGCTACCGCAA-CC-C--T-C-G---G-TC-----C--GG--T---CT-C--AT-CT
838 CATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
12905654 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCCCAGCGG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
12905719 GCCAGAGGGGCGGGATGCGCAAGTCGGGGAT-TAGCCGGGTCCCCCTTTGCATG-TGTTGATCCT
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTACGTGCTGCTGATCCT
* * * * * * *
12905782 GTTGCCACAA-TCTTCAGTCC-AGTCTGATCTTAGACTGGGAATGAATTTCATATGCCTAAGCCA
130 GCTGCCGCAACCCTTGA-TCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
12905845 ACCGATGAAACGAGCGGGCGGGTGGCGGGCGGGCACTACG-TCGGCCAAAGAGAC-GGATGCCCA
193 ACCGACGAAACGAGCAGGC--G-GGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCA
* * * * **
12905908 AGCCGTGGAGCGATAGGGTGGCAGGTGGGTTTAAGAACATCTTCATATTTCTGCATGCCAATGAT
254 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
12905973 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCACGA
319 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
12906038 CGACTCGTTTTCAATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
384 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
12906103 TCAGAAGGAGTTTTGGCCCCAAACTTGGTA-ATCATGATCCTTGTATTTTTGTTGGCATGCACAA
449 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
12906167 AAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
12906231 TCAGACACTTTAATGGCTACCGGCAGCAAACCTGTGAAATCTCAAAGTGCTCTTTTAAGGGGGTG
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-TGCTC-TTTAAGGGGGTG
* * * * *
12906296 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCTACATAAGGG-CAAGTACCAGCACCCATCAC
641 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
12906360 ACAATGCATTGCTCACACAGCATTGCGCACACCCCCCGG-CCCCCGATCGCCGGAAACCCCCAAT
706 AC-AT-CA----T------G---TGCGCACACCCCCCGGCCCCCCGATCGCCGG-AA-CCCCAAT
** * * * * *
12906424 GTTGT-GGCCAGGTTCTTCG-GGATGCTCCGACGATGGTGCCCCGAGCGAAGAAAAATGCTAGCA
754 GCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCAGA-CGAAGAAAAATG-TGGCA
* *
12906487 CCGGGCACATTGCCCGAGCCCAACGATGT--TGCTTGCCAAACCCTCGGTCCGGTCCGATC-T-G
817 CC-AGCACA-TGCCCGAGCCCAGC-ATGTGCTGC-TG-C-AACCCTCGGTCCGGTCCGATCTTAG
*
12906548 ACTGGGAAT-AACTCCGCAT-C-
876 ACTGGGAATGAACTCCGTATGCT
*
12906568 TAG-CTTGGGAAT-AACTCCGTAT--CTAAGTCAACCCACAAAAACGAGCGT--------T--G-
1 TAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-GAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
12906618 CGG-C------G-GGAATGCGCAAGCCAGGGATTCGAATCGGGTCCCCCTCTGCATGCTTTTGAT
64 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCG-ACCGGGTCCCCCTCTACGTGCTGCTGAT
* * * * * * *
12906675 CTTGCTGCCACAA-CCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTCTGCCAAAGCC
127 CCTGCTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
12906739 AACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTATG-TCGGCCAGAGAGACGGGATGCGCAAG
192 AACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAG
* * * ***
12906803 CCATGGATCGATAGGGTGGTAGATGCGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
12906868 ATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAAACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
12906933 ACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTA-GGTTTGGGATTTTTGAAAATTTTTT
386 ACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * *
12906997 CAGAAGGGGTTCTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCATGCACAAAA
450 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
12907062 AAATTCAGCTAAAACCTCGAAATGTACAAGATTTTGTGACCATTTAGAAAAAAGTGTCCCTATTT
515 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTT
* *
12907127 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGCGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
12907192 GTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCGCA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * ** **** * * *
12907257 TCATGTGCGCACACCCCCCCGGCCCCCTCGTTCGTCGGAA--CCAGTGAAG--AAAAATGTGGCA
709 TCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGT-TCT
* * * *
12907318 CCAGCAC-ATG--CC--CGA----GCCCAG-C--AG----GTGCTGTCA-CA--AC-CG-TCG-G
771 CC-G-ACGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATG-TGGCACCAGCACATGCCCGAG
* * * *** ** * *** * *
12907361 -TCTG---GT-CTGATATTAGACTGGGAAAGAACTCCGTATGCTTAGACTAGGAATGAA---C--
833 CCCAGCATGTGCTGCTGCAACCCTCGGTCCG--GTCCG-AT-CTTAGACTGGGAATGAACTCCGT
12907416 -T-C-
894 ATGCT
**
12907418 ----C---------A-----TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTTG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** ** * * * * *
12907465 GCCAGAGGGGCGAGATGATCAAGCCGAAGATCGATCGGGTCCTCTTCTATGTGCT-ATCGATCCT
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCT-GATCCT
** * ** * *
12907529 GCTGCCATAACCC-TCAGTCC-AGTCTGATCTTAGACTCTGAATGAACTTCATATGCCTAAGCCA
130 GCTGCCGCAACCCTTGA-TCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
12907592 ACTGACGAAACGAG-TGGCCGGGTGGGCAAGCGGGCACTACGCCGGCCAGAGAGACAGGATGCAC
193 ACCGACGAAACGAGCAGG-CGGG-CGG---GCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
* * *
12907656 AAGCCGTGGATAGATAGGGTGGAAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGC
253 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
12907721 CATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
318 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
12907786 ACGACTCGTTTTCTATGTTTCAGGATTTTTGAAACTTTTTGCGGTTC-AGGATGTTTTAAAATAT
383 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTT
* * * * *
12907850 TTTCGGAAAGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGACATGCACA
447 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
12907915 AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
512 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
12907980 TTTAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGT
577 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
12908045 GAGTTCTTGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGAA
642 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*** *
12908110 CATCATGTGCGCACACCCCCCGGCCCCCCGATCATTGGAACCCCAATGCCGCCGGTCAGGTTCTC
707 CATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
*
12908175 CGGCGATGCTCCGACGATGGTGCCTC-GACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
772 CGACGATGCTCCGACGATGGTGCC-CAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* * * * * * * *
12908239 AGAATGTGCTACCGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATCCT
836 AGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
12908302 TAGACTGGGAATCAACTCCATATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * ** * * ** *
12908367 GCCAGAGGGGCGGGATGCGTAAGCTGAGGATCGGTCGGGTCCCCCTCTATGTGCTACCAATCCTA
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* * * * * * * **
12908432 CTGCCGTAACCCTCGGTCTGGTCTAATCTTAGACTCGGAATGAACTCCGTATGCCTAAGCTGACC
131 CTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * **
12908497 AACGAAACAAGCGGGCGGGCAGGCGGGCGGGCACTAGGCCAGCCAGAGAGACGGGATGCGCAAGC
196 GACGAAACGAGCAGGC--G--GGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
12908562 CGTGGATCGATAGGCTGGTAGGTGGATTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATT
257 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
12908627 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCGTGGCAAGATGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *** *
12908692 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTTTTGATGTTTTAAAATTTTTTCG
387 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* *
12908757 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
12908822 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
12908887 ACACTTTAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** *
12908952 CTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCT
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
12909017 TGTGTGCATACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
712 TGTGCGCACA-CCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--
*
12909082 CGATGCTCTAATGATGCTCCGACGATGGTGCCTC-GATGAAGAAAAATGTGGCACCAGCACATGC
772 CGA----C----GATGCTCCGACGATGGTGCC-CAGACGAAGAAAAATGTGGCACCAGCACATGC
* * * *
12909146 CTGAGCCCCGCATGTGTTG-T-CACAACC-C--T-C-G---G----T---CT-GG--T---CT--
828 CCGAGCCCAGCATGTGCTGCTGCA-ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
12909186 G-AT-CT
892 GTATGCT
* * * * * *
12909191 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACTCATGAAATGAGCGTGCGGGCGGTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** *
12909256 GCCAGAGGGGTGGGATGCGCAAATCGGGGATCGATCGGGGATCGGTTGGGTCCCCCTCTGCGTGC
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-C------C----GGGTCCCCCTCTACGTGC
* * * * * *
12909321 TGCTGATCTTGCTACCACAACCCTTGCGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
120 TGCTGATCCTGCTGCCGCAACCCTTG-ATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * *
12909386 CCTAAGCC-ACCGAAGAAATGAGC-GTGCGTGCGAACGGGCATTACG-TCGGCCAAAGAGACGGG
184 CCTAAGCCAACCGACGAAACGAGCAG-GCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGG
* *
12909448 ATGCGTAAGCCGTGGATCGATAGGGTGGTAGGT-GGTTTACAG-ACATCTTCATATTTCTGCATG
247 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCTGCATG
*
12909511 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCA
311 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * * *
12909576 TGGCAAGACGACTCATTTTCAATTTTTCATGATTTTTCAAAACTTTTGACGATTCGGGATTTTTT
376 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT-GAAACTTTTTACGGTTCGAGATTTTTT
* * * *
12909641 AAAATTTTTTCGGAAGG-GGTTTGGCCCCAAACTTGGTAGTCGTGATCCTTTTATTTTTTTTGGC
440 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
12909705 ATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAAGT
505 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGT
*
12909770 GTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
569 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
12909835 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
634 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
12909900 CCATCACACATCATGTGCGCACACCCCCAC--CCGGCCCCGATCATCGCGGAACCCCAATGCCGC
699 CCATCGCACATCATGTGCGCACACCCCC-CGGCC--CCCCGATC-GC-CGGAACCCCAATGCCGT
* * * *
12909963 CGGTCAGGTTCTCC-AGCGATGCTCCGACGATGGTGCCCTGACAAAGAAAAATGCGACACCAGCA
759 CGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCA
*
12910027 CATG-CCGAGCCCAGCATGTGCTG-TCGCAACCCTCGGTCCGGTCCGATCCTAGACTGGGAATGA
823 CATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
*
12910090 ACTCTGTATGCCT
887 ACTCCGTATG-CT
* * * * * *
12910103 TAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCAAGAATCGAACGTGCGGGCGCTCAGCCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * ** *
12910168 GCCATAGGGGCAGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATCCTA
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* * * * * * * *
12910233 CTACCACAACCATCGGT-CTAGTCTGATCTTAGACTGGAAATGAACTCCGAATGCCTAAGCCAAC
131 CTGCCGCAACCCTTGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
12910297 CTACGAAACGAACAGGCGGGCGGGCGGGCGAGCACTATGCCGACCAGAGAGAAGGGATGCGCAAG
195 CGACGAAACGAGCAGGCGGGCGGGC--G-G-GCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
* * * *
12910362 CCGTGGATTGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCAAATTTTTGCATGCCAATGCCAT
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
12910427 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** * * *
12910492 ACTCATTTTCAATTTTTCATGATTTTCAAAACTTTTGACGATTCGGGATTTTTTAAAATTTTTTC
386 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
12910557 GGAAGGGGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
451 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
12910622 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
12910687 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
12910752 TCTCGAGGTTTGATGAGGGATAGGGAGCCAATATATGGGCCAAGTACCAGCACCCATCGCACAAC
646 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
12910817 ATCTGCGCACACCCCCTCGGCCCCCTCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCTCCG
711 ATGTGCGCACACCCCC-CGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * *
12910882 ACGATGCTCCGACAATGGTGCCTC-GATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
774 ACGATGCTCCGACGATGGTGCC-CAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
* * * * *
12910946 CATGTGCTGTTGCGACCCTTGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCT
838 CATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
12911007 TAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGGAATGAGCGTACGGGCACTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * ** * * * * * *
12911072 GCCAGAAGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCTCCTCCATGTGCTACCGATCCTA
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* * * * * *
12911137 TTGCCGTAACCC-TCAGTCTGATCTGATCTTACACTGGGAATGCACTCCGTATGCCTAAGCCAAC
131 CTGCCGCAACCCTTGA-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* **
12911201 CGACGAAAC--G-A-GTGGGC-GGCGGGCACTACGCCAGCCA-A-AGA---GA----C-A-----
195 CGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
12911246 -G---GATAGGGTGGTTGGTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
**
12911307 ATCTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
12911372 GTTTTC-ATTTTTCATGA-TTTTCAAACTTTTGACGGTTCGAGA-TTTTTAAAA-TTTTTCGGAA
390 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
*
12911433 GGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
455 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
12911497 CAGCCAAAAACTC-AA-TGTACAAGATTTT-TGACCATTTGAAAAAAGTGT-CCCATTTCAGACA
520 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
12911558 CTTTAATGGCTAATGGTAGCAAACCTGTAAAATCTCAAA-GCTCTTTAA-GGGGTGTGAGTTCTT
585 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
12911621 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGT
650 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
12911686 GCGCATACGCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
715 GCGCACAC-CCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA
*
12911751 TGCTCTGATGATGCTCCGACGATGGTGCCTC-GACGAAGAAAAATGTGGCACCAGCACATGCCTG
775 ----C----GATGCTCCGACGATGGTGCC-CAGACGAAGAAAAATGTGGCACCAGCACATGCCCG
* * *
12911815 AGCCCCGCATGTGTTG-T-CACAACC-C--T-C-G---G----T---CT-GG--T---CT--G-A
831 AGCCCAGCATGTGCTGCTGCA-ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
12911854 T-CT
895 TGCT
* * * * * *
12911857 TGGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGGTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** *
12911922 GCCAGAGGGGTGGGATGCGCAAATCGGGGATCGATCGGGGATCGGTTGGGTCCCCCTCTGCGTGC
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-C------C----GGGTCCCCCTCTACGTGC
* * * * * *
12911987 TGCTGATCTTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGC
120 TGCTGATCCTGCTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * ** * *
12912052 CTAAGCCAACCGAAGAAATGAGC-GTGCGTGCGAACGGGCATTACG-TCGGCCAAAGAGACGGGA
185 CTAAGCCAACCGACGAAACGAGCAG-GCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGA
*
12912115 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACAG-ACATCTTCATATTTCTGCATGC
248 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCTGCATGC
* *
12912179 CAATGCCATTTTTATGGCTTGTAAATTCATACAAGGGTCCCTTAAGCCTTCACGTGAAATTTCAT
312 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * ** * * *
12912244 GGCAAGACGACTCATTTTCAATTTTTCATGATTTTCAAAACTTTTGACGATTCGGGATTTTTTAA
377 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
* * * * *
12912309 AATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTTTATTTTTTTTGGTAT
442 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
12912374 GCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTC
507 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
12912439 CCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGG
572 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
12912504 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
637 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* ** *
12912569 TCACACATCATGTGCGCACACCCCCACCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGT
702 TCGCACATCATGTGCGCACA--CCC-CCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* * * *
12912634 CAGGTTCTCC-AGCGATGCTCCGACGATGGTGCCCTGACAAAGAAAAATGCGACACCAGCACATG
763 CAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATG
*
12912698 CCCGAGCCCAGCATGTGCTG-TCGCAACCCTCGGTCCGGTCCGATCCTAGACTGGGAATGAACTC
827 CCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
*
12912762 TGTATGCT
891 CGTATGCT
* * * * * *
12912770 TAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCAAGAATCGAACGTGCGGGCGCTCAGCCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * ** *
12912835 GCCATAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCAATCCTA
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* * * * * * * *
12912900 CTACCACAACCATCGGT-CTAGTCTGATCTTAGACTGGAAATGAACTCCGAATGCCTAAGCCAAC
131 CTGCCGCAACCCTTGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
12912964 CTACGAAACGAACAGGCGGGCGGGCGGGCGAGCACTATGCCGACCAGAGAGAAGGGATGCGCAAG
195 CGACGAAACGAGCAGGCGGGCGGGC--G-G-GCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
* * * *
12913029 CCGTGGATTGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCAAATTTTTGCATGCCAATGCCAT
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
12913094 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCACGGCAAGACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
12913159 ACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTT
386 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT
* * *
12913223 CGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTTGGCATGCACAAA
450 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAA
*
12913288 AAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
514 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
12913353 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
12913418 GTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATATGGGCCAAGTACCAGCACCCATCGCACA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
12913483 ACATCTGCGCACACCCCCTCGGCCCCCTCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCTC
709 TCATGTGCGCACACCCCC-CGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* ** * *
12913548 CGACGATGCTCCGACAATGGTGCCTC-GGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCC
772 CGACGATGCTCCGACGATGGTGCC-CAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* * *
12913612 AGCATGTGCTGCTGCAACCCTTGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCT
836 AGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
12913675 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * ** * * * * * *
12913740 GCCAGAAGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCTCCTCCATGTGCTACCGATCCTA
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* * * * * *
12913805 TTGCCGTAACCC-TCAGTCTGATCTGATCTTACACTGGGAATGCACTCCGTATGCCTAAGCCAAC
131 CTGCCGCAACCCTTGA-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* **
12913869 CGACGAAAC--G-A-GTGGGCGGGCGGGCACTACGCCAGCCA-A-AGA---GA----C-A-----
195 CGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
12913915 -G---GATAGGGTGGTTGGTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
**
12913976 ATCTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
12914041 GTTTTTTATTTTTCATGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTTGTTCGGAA
390 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
12914106 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAAT
455 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAAT
* * *
12914171 TCAGCCAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCTCATTTCAGAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
12914236 ACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
12914301 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
12914366 CGCGCACATCCCCCCCGGCCCCCCTGATCGCCGGAACCCTAATGCCGTCAGTCAGGTTCTCCGAC
714 TGCGCACA--CCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * * *
12914431 GATGCTCCGGCGATGGTGCCTCAG-CGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAACA
776 GATGCTCCGACGATGGTGCC-CAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
12914495 TGTGCTG-TCGCAACCCTCGGTCTGATCCGATCTTAGACGGGGAATGAACTCCATATGCT
840 TGTGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
12914554 TAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCAT----ACG-T-ATGCC
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-GCC
* ** * *
12914613 GGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGGCCCCCTCTGCGTGCTG-TCGATCC
65 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCT-GATCC
* * * * * * * *
12914677 TGCTGCCGCAAGCCTCGGTCTGGTTTGATCTGAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
129 TGCTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
12914742 CCGACGAAACGAGC-GGCGGGCGGACGGGCGGGTGGGCACTACGC-CGCCAGAGAGACGGGATGC
194 CCGACGAAACGAGCAGGC--G-GG-CGGGC----GGGCACTACGCTGGCCAGAGAGACGGGATGC
*
12914805 GCAAGCCGTGGATCGATAAGGT-GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
251 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
12914869 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GCA
316 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** * *
12914933 GGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
381 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * *
12914998 TTTTTGAAAGGAGTTTTTGCCCCAAAC----T-----TG------G-----TT-TTGGCATGCAC
446 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
12915042 AAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGA
511 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
12915107 TTTTAGACACTTTAGTGGCTACTGGCAGCAATCTTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
576 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
12915172 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTATCAGCACCCATCGC
641 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
12915237 ACATCATGTGCGCACA-----C--CCCCCCGATCGCTGGAACGCCAATGCCGCCGGTCAGGTTCT
706 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * *
12915295 CTGGCGATGCTCC-AGCGATGGTGCCCCA-ACGAAAAAAAATATGGCACCAACACATGCCCGAGC
771 CCGACGATGCTCCGA-CGATGGTG-CCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* * * * * *
12915358 CCAGCATTTGCTGCTGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTTCATATGCT
834 CCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
12915423 TAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * ** * * ** * *
12915488 GCCAGAGGGGTGGGTTACGCAAGCTGGGGATCGATTGGGT-CCCCTCTACATGCTACCAATCTTA
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* * * * *
12915552 CTGTCGCAACCC-TCAGCTCGAT-TCGATCTTAGACTGGGAATGAGCTTCGTATGCCTAAGCCAA
131 CTGCCGCAACCCTTGATC-CGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
12915615 CCGATGAAACGAGCAGGTGGGCGGGCGGGCGCTACG-TCGGCCAGAGATACGGGATGCGCAAGCC
194 CCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCC
* **
12915679 GTGGATCGATACGGTGGTAGGTAAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
12915744 TTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
12915809 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTTGG
388 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * * *
12915874 AAGAATTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT-CACAAAAACA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * *
12915938 TTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCGATTCCATA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
12916003 CACTTTAATGGCTACTGGCAGCAATCTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
12916068 TCGAGGTTTGATGAGGGATA-GGGGCCAATATAATGGCCGAGTACCAACACCCATCGCACATCAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
12916132 GTGCGCACA----CC--CCCCCCGATCGCTGGAACACCAATGCCGCCGGTCAGGTTCTCTGGCGA
713 GTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* ** *
12916191 TGCTCCGGCGATGGTGCCCCA-ACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATG
778 TGCTCCGACGATGGTG-CCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* *
12916255 TGCTG-TCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCT
842 TGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * * *
12916312 TAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAACGTGCGGGTGCTCAGCTG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
12916377 GCCAGAGGGGCGAGATGCGTAAGCCGGGGATC-AGTCGGGTCCCCCTCTACGTGCTACCGATCCT
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTACGTGCTGCTGATCCT
* * *
12916441 GCTACCGCAA-CCTTCAGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 GCTGCCGCAACCCTTGA-TCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * **
12916504 ACCGAGGAAACGAGCGGGTGGATGGGCGGGCGGGCGGGCACTACGCCGGATAGAGAGACGGGATG
193 ACCGACGAAACGAGC------A--GGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATG
*
12916569 CGCAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
250 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
12916634 TTCCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
315 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
12916699 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACAGTTCGAGATTTTTTAAAAT
380 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* * * ** *
12916764 TTTTTTGGAAGGAGTTTTGGTCGCAAACGCGGTAGACGTGATCCTTGTATTTTT-TATGAGGGAT
445 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-T--GGCAT
* * * ******
12916828 AGGGGGC-CAATATAAGGGCCAAGTACCAGC-ACCCATCACATA-TC-ATATGCGCACACCCCCC
507 -----GCACAA-A-AA-----AA-T-TCAGCTA---A--A-A-ACTCGA-A-GTGTACAAGATTT
* * ** ***** * ** * * * *
12916889 TG-GCCCCTCCGATCGTCG-GAACCCCAACGTCACCGATTAGGTTCT-CTGGCGATGCTCCGGCG
549 TGTGACCATTTGAAAAAAGTG-TCCCC-ATTTCA--GA-CA-CTT-TAATGGC--TACT--GGC-
**** * * * * * * *
12916951 ATGGTGCCCCGTCGAAGAAAAATGTGGCACCA-GCACATGACCGAGCCCAGCATGTGCTGCTGCA
602 A--GCAAACC-T----GTAAAATCT--CA-AATGCTCTTTA---AG----G---G-GGTG-TG-A
*** ** * * *** * ** * ** ** *
12917015 ACCCTC--GGTCCGGTCCAGTCTTAGACTGGG--AATGAACTCCGTATGCTTAG-ACTGGGAATC
644 GTTCTCGAGGTTTGAT-GAGGGATAG--GGGGCCAAT--A-TAAG--GGCCAAGTAC-CAGCA-C
* * * * * * * * ** ** *
12917075 AACTTCGTATGCCTTA-GTCAACCCACGAAACGAACGTGCGGGCGCTCAACCGGCCAGAGGGCGG
699 -CCATCGCA--CATCATGT--GCGCAC---AC---C--CCCCG-GC-C--CC--CC-GATCGCCG
** * ** * *
12917139 GATGCACAAGTCGGGGATCGGTC-GAGTCCCCCTCTGCACGTCACCAATCCTGTTGCCGCAACCC
744 GAACCCCAA-T-GCCG-TCGGTCAG-GT-----TCT-C-CG--A-CGA---TGCT-CCG--A---
* * ** *** * * * * * ** ** * *
12917203 TCGATCCGAT-CCGATCCGATCTTAGACTG-GGAATGAACTGCGTATGCCTAAGCCAACAGAAAA
786 -CGAT--GGTGCCCAGACGA-AGAAAAATGTGG---CACCAGCACATGCCCGAGCC--CAG-CAT
** ** * * * * * ** * * * *
12917266 AAGGAGCGGGCAGGCGGGCACAGTATTGG-CCAGA---GAGACTGCGAATCAACTCTGTATGCT
841 GTGCTGC-TGCA-AC--CCTCGGT-CCGGTCC-GATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
12917326 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGGTGCGGGCGCTTAGCT
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCGCTCAGCC
* * * * * * *
12917391 GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGCTGGCTCCCTCTCTACGTGCTGCCGATCCT
65 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCT
** * * * * * * ** *
12917456 GCTATCGTAACCCTCGGTCTGGTCCGATCTTAGACTTTGAATGAACTCTGTATGCCTAAGCCAAC
130 GCTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * ** * * *
12917521 CGATGAAACGAGCAGGCGGCCGGGCGGCGATCACTATGCCAGCCAGAGATACGGGATGTGCAAGT
195 CGACGAAACGAGCAGGCGGGCGGGCGG-G--CACTACGCTGGCCAGAGAGACGGGATGCGCAAGC
** * ** *
12917586 CACGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATACCATT
257 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
12917651 TTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAGGACGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
12917716 CTCCTTTTGTATTTTTCACT-ATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTC
387 CTCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * * * * * *
12917780 GTAGGGAATTTTGGCCCCAAACTTGGTGGACATGATCCTTGTATTTTTATTGGCAGGCACAAAAA
451 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
12917845 TATTCAGCAAAAAACTTGAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
516 AATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
12917910 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
12917975 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATCGCACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
12918040 CCTGTGCGCACACCCCCTCGGCCCTCCCGATCGTCAGAACCCCAATGCCGTCGAGTCAGGTTCTC
710 CATGTGCGCACACCCCC-CGGCCC-CCCGATCGCCGGAACCCCAATGCCGTCG-GTCAGGTTCTC
* * * * * ** * ** *
12918105 TGGCGCTGCTCTGGCGATGGCACCCCGGTGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCA
772 CGACGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* ** * * * * * *
12918170 GCATGTGCTACCACAACCCTCGATCCAGTTCGATCATAGATTGGGAATGAACTCTGTATGCT
837 GCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
** * * *
12918232 TAGACTGGGAATGAACTCTATATGCCTAAGTCAATCCACG-AACAAGCGTGCGGGCGCTCAGCCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** ** * * *
12918296 GCCAGAGGGGTGGGATGCGCAAGCCTAGGATCGGTCGGGTCCCCCACTGCGTGCT-ATCGATCCT
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCT-GATCCT
* * * * * * *
12918360 GCTGTCGTAACCC-TCAGTCTGGTCTGACCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAA
130 GCTGCCGCAACCCTTGA-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
12918424 CTGACAAAATGAGCGGGCTGGCGGGCGCGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
194 CCGACGAAACGAGCAGGCGGGC-GG-GCG--GGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
12918489 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
255 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
12918554 TTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTAATGGCAAGAT
320 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
12918619 GACTCGTTCTCTATTTTTCACGATTTTCGACACTTTTT-CTGGTTCGGGATTTTTTAAAATTTTT
385 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-GGTTCGAGATTTTTTAAAATTTTT
* * * * * * **
12918683 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACCTAATCCTTGTGTTTTTTTTGGCATGCGTAAA
449 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
12918748 AAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGCGACCATTTGAAAATAGTGTCCCCATTT
514 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* **
12918813 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTACGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
12918878 GTTCTTGATGTTTGATCAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
**
12918943 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTAGGAACCCCAATGTCGCCGGTCAGGTTCTCC
709 TCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAA--T-GCC-GTC-GG---T-C
* * ** * **
12919008 AGTGATGCTCCAACGATGCTCCGGTGATGGTGCCCTGACGAAGAAAAATAAGGCACCAGCACATG
764 AG-G-TTCTCCGACGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATG
** * *
12919073 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCC
827 CCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
*
12919138 GTACGCT
892 GTATGCT
* * * *
12919145 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTTAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
** *
12919210 GCCAGAGGGGCGGGATTTGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
* * * *
12919275 CTGCCACAACCC-TCAGTCC-AGTCTGATCTTAAACTGGAAATGAACTCCGTATGCCTAAGCCAA
131 CTGCCGCAACCCTTGA-TCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
12919338 TCGACGAAAC--G-A-GCGGACGGGCGGGCA-TGACG-TCAGCCAGAGAGACGGGATGCGCAAGC
194 CCGACGAAACGAGCAGGCGGGCGGGCGGGCACT-ACGCT-GGCCAGAGAGACGGGATGCGCAAGC
* ** *
12919397 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGTGTGCCAATGCTATT
257 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
12919462 TTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
12919527 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCG-GCA-TTTTTAAAATTTTTTT
387 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAAA-TTTTTT
* * * * * * *
12919590 TGAAAGTAGTTTTGGCCCCAAAGTTGGTTGACGTGATCCTTTTGTTTTTGTTGGCATGCACAAAA
450 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
12919655 AAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
515 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
12919720 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
12919785 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** * **
12919850 CATGTGAGTACACCCCCCCGGCCCCCTTGATCGCCGGAACCTTAATGCCGCCGGTCAGGTTCTTT
710 CATGTGCGCACA-CCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * * * *
12919915 GACGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGACACTAACACATGCCCGAGCCCAG
773 GACGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
* ** *
12919980 CATGTGCTGCCGCAAATCTCGGTCCGGTCCGATCTTAGA-TAGGGAATGAACTCCATATGCT
838 CATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCT
* * * * *
12920041 TAGACTCTGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGTGCTCAGCC
1 TAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * *
12920106 TGCCAGAGGGGCGGGATGCGCAA-CCTGGGGATCGATCGGGTCTCCTTCTGCATGCCG-TCAATC
65 GGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGACCGGGTCCCCCTCTACGTGCTGCT-GATC
* * * * *
12920169 TTGCTGCCGTAACCCTCGGTCTGAT-TGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
128 CTGCTGCCGCAACCCTTGATCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
12920233 AACCGATGAAAC--G-A-GCGGGCGGGCGGGCACTATG-TCGGCCGGAGAGACGGGATGTGCAAG
192 AACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAG
* *
12920293 CCATGGATCGATAGGGTGGTAGGT-GGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCAT
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
12920357 TTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACGTGAATTTTCATGGTAAGACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
12920422 ACTCGTTTTCTATTTTTCATGATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT
386 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
12920487 GAAAGTAGTTTT-GCCCCAAACTTGGTAGACATGATCCGTT-TATTTTTGTTGGCATGCACAAAA
451 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC-TTGTATTTTTGTTGGCATGCACAAAA
*
12920550 AAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
515 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
12920615 AGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCGAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
12920680 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
12920745 CATGTGCGCACACGCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
710 CATGTGCGCACAC-CCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * ** * *
12920810 GGCGATGCTCCGACGATAGTGCCCTGACGAAAAAAAATACGACACCAGCACATGCCCGAGTCCAG
773 GACGATGCTCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
** * * * * *
12920875 CATGTGCTATTGTAAACCTCGGTCCGGTCTGATCTTAGACGGGGAATGAACTTCGTATGCT
838 CATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
12920936 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
12920983 AGACGTGATG
Statistics
Matches: 20093, Mismatches: 2999, Indels: 2311
0.79 0.12 0.09
Matches are distributed among these distances:
833 3 0.00
834 10 0.00
835 14 0.00
838 1 0.00
842 1 0.00
844 1 0.00
845 2 0.00
846 1 0.00
847 1 0.00
849 51 0.00
850 476 0.02
851 43 0.00
852 64 0.00
853 25 0.00
854 17 0.00
855 175 0.01
856 302 0.02
857 9 0.00
858 5 0.00
859 23 0.00
860 171 0.01
861 103 0.01
862 257 0.01
863 17 0.00
864 11 0.00
865 122 0.01
866 46 0.00
867 352 0.02
868 337 0.02
869 283 0.01
870 24 0.00
871 70 0.00
872 32 0.00
873 92 0.00
874 181 0.01
875 82 0.00
876 526 0.03
877 149 0.01
878 670 0.03
879 414 0.02
880 39 0.00
881 15 0.00
882 15 0.00
883 4 0.00
884 14 0.00
885 160 0.01
886 169 0.01
887 400 0.02
888 394 0.02
889 723 0.04
890 419 0.02
891 131 0.01
892 204 0.01
893 403 0.02
894 392 0.02
895 1280 0.06
896 1181 0.06
897 799 0.04
898 550 0.03
899 309 0.02
900 199 0.01
901 607 0.03
902 1064 0.05
903 279 0.01
904 727 0.04
905 1043 0.05
906 1012 0.05
907 282 0.01
908 17 0.00
909 14 0.00
910 15 0.00
911 49 0.00
912 118 0.01
913 260 0.01
914 163 0.01
915 78 0.00
916 29 0.00
917 9 0.00
918 4 0.00
919 17 0.00
920 11 0.00
921 5 0.00
922 5 0.00
923 2 0.00
924 15 0.00
925 26 0.00
926 12 0.00
927 1 0.00
928 19 0.00
929 16 0.00
930 5 0.00
931 10 0.00
932 8 0.00
933 20 0.00
934 19 0.00
935 13 0.00
936 17 0.00
937 28 0.00
938 24 0.00
939 19 0.00
940 9 0.00
941 23 0.00
942 39 0.00
943 56 0.00
944 44 0.00
945 22 0.00
946 28 0.00
947 7 0.00
948 7 0.00
949 18 0.00
950 32 0.00
951 27 0.00
952 18 0.00
953 19 0.00
954 11 0.00
955 16 0.00
956 8 0.00
957 4 0.00
958 15 0.00
959 8 0.00
960 13 0.00
961 12 0.00
962 1 0.00
964 1 0.00
965 1 0.00
969 2 0.00
971 1 0.00
972 7 0.00
974 7 0.00
976 1 0.00
977 1 0.00
978 1 0.00
979 5 0.00
981 3 0.00
982 13 0.00
983 1 0.00
984 6 0.00
985 8 0.00
986 6 0.00
987 1 0.00
988 2 0.00
989 6 0.00
990 12 0.00
991 14 0.00
992 2 0.00
993 1 0.00
995 6 0.00
996 2 0.00
997 1 0.00
998 3 0.00
999 3 0.00
1002 2 0.00
1003 3 0.00
1004 3 0.00
1005 7 0.00
1006 5 0.00
1007 17 0.00
1008 4 0.00
1009 13 0.00
1010 241 0.01
1011 5 0.00
1012 3 0.00
1013 3 0.00
1014 66 0.00
1015 130 0.01
1016 9 0.00
1017 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTG
CTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
TCCGACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
Found at i:12903029 original size:26 final size:26
Alignment explanation
Indices: 12902993--12903043 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
12902983 GGTCTGATCT
12902993 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
12903019 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
12903044 CTATCAATCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:12907410 original size:26 final size:26
Alignment explanation
Indices: 12907373--12907424 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12907363 TGGTCTGATA
* *
12907373 TTAGACTGGGAAAGAACTCCGTATGC
1 TTAGACTAGGAAAGAACTCCATATGC
*
12907399 TTAGACTAGGAATGAACTCCATATGC
1 TTAGACTAGGAAAGAACTCCATATGC
12907425 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (26 bp):
TTAGACTAGGAAAGAACTCCATATGC
Found at i:12908310 original size:26 final size:26
Alignment explanation
Indices: 12908274--12908329 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
12908264 CCAGTCCAAT
* *
12908274 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATCAACTCCATATC
*
12908300 CTTAGACTGGGAATCAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATC
12908326 CTTA
1 CTTA
12908330 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATC
Found at i:12910114 original size:27 final size:27
Alignment explanation
Indices: 12910076--12910129 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
12910066 GGTCCGATCC
12910076 TAGACTGGGAATGAACTCTGTATGCCT
1 TAGACTGGGAATGAACTCTGTATGCCT
12910103 TAGACTGGGAATGAACTCTGTATGCCT
1 TAGACTGGGAATGAACTCTGTATGCCT
12910130 AAGTTAACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (27 bp):
TAGACTGGGAATGAACTCTGTATGCCT
Found at i:12910475 original size:906 final size:901
Alignment explanation
Indices: 12909189--12920982 Score: 11744
Period size: 906 Copynumber: 13.1 Consensus size: 901
12909179 CTGGTCTGAT
* * *
12909189 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACTCATGAAAT-GAGCGTGCGGGCGGTCAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG-AATCGAGCGTGCGGGCGCTCAG
* * * *
12909253 TCGGCCAGAGGGGTGGGATGCGCAAATCGGGGATCGATCGGGGATCGGTTGGGTCCCCCTCTGCG
65 CCGGCCAGAGGGGCGGGATGCGC-AA-----G--C---CGGGGATCGGTCGGGTCCCCCTCTACG
* * * * * * *
12909318 TGCTGCTGATCTTGCTACCACAACCCTTGCGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGT
119 TGCTGCCGATCCTGCTGCCGCAACCCTCG-GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * * ** * * * *
12909383 ATGCCTAAGCC-ACCGAAGAAATG--A-GCGTGCGTGCGAACGGGCATTACGTCGGCCAAAGAGA
183 ATGCCTAAGCCAACCGACGAAACGACAGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGA
* *
12909444 CGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGT-GGTTTACAG-ACATCTTCATATTTCTG
248 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCTG
*
12909507 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAAT
312 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * *
12909572 TTCATGGCAAGACGACTCATTTTCAATTTTTCATGATTTTTCAAAACTTTTGACGATTCGGGATT
377 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTCGAAACTTTTGACGGTTCGGGATT
* * *
12909637 TTTTAAAATTTTTTCGGAAGGGGTTTGGCCCCAAACTTGGTAGTCGTGATCCTTTTATTTTTTTT
441 TTTTAAAATTTTTTCGGAAGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
* *
12909702 GGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTATGACCATTTGAAAAAA
506 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAA
*
12909767 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTT
570 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
12909832 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
635 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
*
12909897 CACCCATCACACATCATGTGCGCACACCCCCACCCGGCCCCGATCATCGCGGAACCCCAATGCCG
700 CACCCATCGCACATCATGTGCGCACA-CCCC-CCCGGCCCCGATCATCGCGGAACCCCAATGCCG
* *
12909962 CCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCTGACAAAGAAAAATGCGACACCAGCA
763 CCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCA
*
12910027 CATG-CCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCCTAGACTGGGAATGAA
828 CATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
12910091 CTCTGTATG
893 CTCTGTATG
* * *
12910100 CCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCAAGAATCGAACGTGCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCGCTCAG
* * * * * *
12910165 CCAGCCATAGGGGCAGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
* * * * * * *
12910230 CTACTACCACAACCATCGGTCTAGTCTGATCTTAGACTGGAAATGAACTCCGAATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
12910295 ACCTACGAAACGAACAGGCGGGCGGGCGGGCGAGCACTATGCCGACCAGAGAGAAGGGATGCGCA
195 ACCGACGAAACG-ACAGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCA
* * * *
12910360 AGCCGTGGATTGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCAAATTTTTGCATGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
12910425 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
12910490 CGACTCATTTTCAATTTTTCATGATTTTCAAAACTTTTGACGATTCGGGATTTTTTAAAATTTTT
389 CGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTGACGGTTCGGGATTTTTTAAAATTTTT
*
12910555 TCGGAAGGGGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTTTTGGCATGCACAAA
454 TCGGAA-GGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
12910620 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
12910685 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
12910750 GTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATATGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
12910815 ACATCTGCGCACACCCCCTCGGCCCC-CTCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCT
713 TCATGTGCGCACACCCCCCCGGCCCCGATC-ATCG-CGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
12910879 CC-GACGATGCTCCGACAATGGTG-CCTCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGC
776 CCAG-CGATGCTCCGACGATGGTGCCCT-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
12910942 CCAGCATGTGCTGTTGCGACCCTTGGTCCGGTCCGATCTTAGACTGAGAATGAACT-TCGTATG
839 CCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT-GTATG
* * * *
12911005 CTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGGAAT-GAGCGTACGGGCACTCAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC-GAATCGAGCGTGCGGGCGCTCAG
* * * * * * *
12911069 CCGGCCAGAAGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCTCCTCCATGTGCTACCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
** * * * * *
12911134 CTATTGCCGTAACCCTCAGTCTGATCTGATCTTACACTGGGAATGCACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
12911199 ACCGACGAAACG--A-----GTGGGC-GGCGGGCACTACGCC-AGCCA-A-AGA---GA----C-
195 ACCGACGAAACGACAGGCGGGCGGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCA
* *
12911245 A------G---GATAGGGTGGTTGGTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
**
12911301 ATTTTTATCTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
12911366 CGACTCGTTTTC-ATTTTTCATGATTTTC-AAACTTTTGACGGTTCGAGA-TTTTTAAAA-TTTT
389 CGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTGACGGTTCGGGATTTTTTAAAATTTTT
12911427 TCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
454 TCGGAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
12911491 AAAATTCAGCCAAAAACTC-AA-TGTACAAGATTTT-TGACCATTTGAAAAAAGTGT-CCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
12911552 CAGACACTTTAATGGCTAATGGTAGCAAACCTGTAAAATCTCAAA-GCTCTTTAA-GGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
**
12911615 GTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * ** *
12911680 TCTTGTGCGCATACGCCCCCGACCCC-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
713 TCATGTGCGCACACCCCCCCGGCCCCGATC-ATCG-CGGAACCCCAATGCCGCCGGTCAGGTTCT
*
12911744 CCGACGATGCTCTGATGATGCTCCGACGATGGTG-CCTCGACGAAGAAAAATGTGGCACCAGCAC
776 -C--C-A-G--C----GATGCTCCGACGATGGTGCCCT-GACGAAGAAAAATGCGGCACCAGCAC
* * * *
12911808 ATGCCTGAGCCCCGCATGTGTTGTCACAA-CC-C--T-C-G---G----T---CT--G---G---
829 ATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
12911849 TCTG-AT-
894 TCTGTATG
* * *
12911855 CTTGGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAT-GAGCGTGCGGGCGGTCAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG-AATCGAGCGTGCGGGCGCTCAG
* * * *
12911919 TCGGCCAGAGGGGTGGGATGCGCAAATCGGGGATCGATCGGGGATCGGTTGGGTCCCCCTCTGCG
65 CCGGCCAGAGGGGCGGGATGCGC-AA-----G--C---CGGGGATCGGTCGGGTCCCCCTCTACG
* * * * *
12911984 TGCTGCTGATCTTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTA
119 TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * ** * * * *
12912049 TGCCTAAGCCAACCGAAGAAATG--A-GCGTGCGTGCGAACGGGCATTACGTCGGCCAAAGAGAC
184 TGCCTAAGCCAACCGACGAAACGACAGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGAC
*
12912111 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACAG-ACATCTTCATATTTCTGC
249 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCTGC
* *
12912175 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAGGGTCCCTTAAGCCTTCACGTGAAATT
313 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
12912240 TCATGGCAAGACGACTCATTTTCAATTTTTCATGATTTTCAAAACTTTTGACGATTCGGGATTTT
378 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTGACGGTTCGGGATTTT
* *
12912305 TTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTTTATTTTTTTTG
443 TTAAAATTTTTTCGGAA-GGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* * *
12912370 GTATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAG
507 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
12912435 TGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAACGCTCTTTA
572 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
12912500 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
637 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
*
12912565 CCCATCACACATCATGTGCGCACACCCCCACCCGGCCCCCCCGATCAT--CGGAACCCCAATGCC
702 CCCATCGCACATCATGTGCGCACA-CCCC-CCCGG---CCCCGATCATCGCGGAACCCCAATGCC
* *
12912628 GCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCTGACAAAGAAAAATGCGACACCAGC
762 GCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGC
*
12912693 ACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCCTAGACTGGGAATGA
827 ACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
12912758 ACTCTGTATG
892 ACTCTGTATG
* * *
12912768 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCAAGAATCGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCGCTCAGC
* * * * ** *
12912833 CAGCCATAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * * *
12912898 TACTACCACAACCATCGGTCTAGTCTGATCTTAGACTGGAAATGAACTCCGAATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
12912963 CCTACGAAACGAACAGGCGGGCGGGCGGGCGAGCACTATGCCGACCAGAGAGAAGGGATGCGCAA
196 CCGACGAAACG-ACAGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
* * * *
12913028 GCCGTGGATTGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCAAATTTTTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
12913093 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCACGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
12913158 GACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTGACGGTTCGGGATTTTTTAAAATTTTTT
* *
12913223 CGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTTGGCATGCACAAA
455 CGGAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAA
*
12913288 AAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
12913353 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
12913418 GTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATATGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
12913483 ACATCTGCGCACACCCCCTCGGCCCC-CTCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCT
713 TCATGTGCGCACACCCCCCCGGCCCCGATC-ATCG-CGGAACCCCAATGCCGCCGGTCAGGTTCT
* ** *
12913547 CC-GACGATGCTCCGACAATGGTG-CCTCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGC
776 CCAG-CGATGCTCCGACGATGGTGCCCT-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
12913610 CCAGCATGTGCTG-CTGCAACCCTTGGTCCGGTCCGATCTTAGACTGAGAATGAACT-TCGTATG
839 CCAGCATGTGCTGTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT-GTATG
* * *
12913673 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT-GAGCGTACGGGCACTCAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG-AATCGAGCGTGCGGGCGCTCAG
* * * * * * *
12913737 CCGGCCAGAAGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCTCCTCCATGTGCTACCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
** * * * * *
12913802 CTATTGCCGTAACCCTCAGTCTGATCTGATCTTACACTGGGAATGCACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
12913867 ACCGACGAAACG--A-----GTGGGCGGGCGGGCACTACGCC-AGCCA-A-AGA---GA----C-
195 ACCGACGAAACGACAGGCGGGCGGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCA
* *
12913914 A------G---GATAGGGTGGTTGGTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
**
12913970 ATTTTTATCTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * * *
12914035 CGACTCGTTTTTTATTTTTCATGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTTGT
389 CGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTGACGGTTCGGGATTTTTTAAAATTTTT
*
12914100 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
454 TCGGAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AA
* * *
12914165 AAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCTCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
12914230 TCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
12914295 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * * *
12914360 ATCATGCGCGCACATCCCCCCCGGCCCCCCTGATCGCCGGAACCCTAATGCCGTCAGTCAGGTTC
712 ATCATGTGCGCACA-CCCCCCCGGCCCCGATCATCG-CGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
12914425 TCC-GACGATGCTCCGGCGATGGTG-CCTCAGCGAAGAAAAATGCGACACCAACACATGCCCGAG
775 TCCAG-CGATGCTCCGACGATGGTGCCCTGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * **
12914488 CCCAACATGTGCTGTCGCAACCCTCGGTCTGATCCGATCTTAGACGGGGAATGAACTCCATATG
838 CCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
* * *
12914552 CTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCACGAAACGAGCAT----ACG-T-AT
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCGCTCA-
* * * *
12914610 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGGCCCCCTCTGCGTGCTGTCGAT
64 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGAT
* * * *
12914675 CCTGCTGCCGCAAGCCTCGGTCTGGTTTGATCTGAGACTAGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
*
12914740 AACCGACGAAACGAGC-GGCGGGCGGACGGGCGGGTGGGCACTACGCCG-CCAGAGAGACGGGAT
194 AACCGACGAAACGA-CAGGC--G-GG-CGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGAT
*
12914803 GCGCAAGCCGTGGATCGATAAGGT-GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
254 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
12914867 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-G
319 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
12914931 CAGGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTG-CGGTTCGGGATTTTTTAAA
384 CAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAAC-TTTTGACGGTTCGGGATTTTTTAAA
* * *
12914995 ATTTTTTTGAAAGGAGTTTTTGCCCCAAAC----T-----TG------G------TTTTGGCATG
448 ATTTTTTCGGAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
* *
12915039 CACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
512 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * * *
12915104 CGATTTTAGACACTTTAGTGGCTACTGGCAGCAATCTTGTAAAATCTCAAATGCTCTTTAAGGGG
577 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
12915169 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTATCAGCACCCAT
642 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
*
12915234 CGCACATCATGTGCGCACA----CCC--CCCCG---ATCGCTGGAACGCCAATGCCGCCGGTCAG
707 CGCACATCATGTGCGCACACCCCCCCGGCCCCGATCATCGC-GGAACCCCAATGCCGCCGGTCAG
** ** * ** *
12915290 GTTCTCTGGCGATGCTCC-AGCGATGGTGCCCCAACGAAAAAAAATATGGCACCAACACATGCCC
771 GTTCTCCAGCGATGCTCCGA-CGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * *
12915354 GAGCCCAGCATTTGCTG-CTGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACT-TCA
835 GAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT-G
12915417 TATG
898 TATG
* * * * *
12915421 CTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
12915486 CGGCCAGAGGGGTGGGTTACGCAAGCTGGGGATCGATTGGGT-CCCCTCTACATGCTACCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
12915550 TACTGTCGCAACCCTCAG-CTCGAT-TCGATCTTAGACTGGGAATGAGCTTCGTATGCCTAAGCC
131 TGCTGCCGCAACCCTCGGTCT-GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
12915613 AACCGATGAAACGAGCAGGTGGGCGGGCGGGC--G--CTACGTCGGCCAGAGATACGGGATGCGC
194 AACCGACGAAACGA-CAGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGC
* **
12915674 AAGCCGTGGATCGATACGGTGGTAGGTAAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
12915739 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
12915804 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTT
388 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTGACGGTTCGGGATTTTTTAAAATTTT
* ** *
12915869 TTTGGAAGAATTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT-CACAA
453 TTCGGAAG-GGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* * * *
12915933 AAACATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCGATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
12915998 CCATACACTTTAATGGCTACTGGCAGCAATCTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
12916063 AGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAATGGCCGAGTACCAACACCCATCGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
12916127 ATCATGTGCGCACA---CCCC--CCCCG---ATCGCTGGAACACCAATGCCGCCGGTCAGGTTCT
712 ATCATGTGCGCACACCCCCCCGGCCCCGATCATCGC-GGAACCCCAATGCCGCCGGTCAGGTTCT
** * ** * *
12916184 CTGGCGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATACGGCACCAACACATGCCCGAGCCC
776 CCAGCGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* **
12916249 AGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
841 AGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
* * * *
12916310 CTTAGACTAGGAATGAACT-TCGTATGCCTAAGTCAACCCACAAAAT-GAACGTGCGGGTGCTCA
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCAC-GAATCGAGCGTGCGGGCGCTCA
* * * * *
12916373 GCTGGCCAGAGGGGCGAGATGCGTAAGCCGGGGATCAGTCGGGTCCCCCTCTACGTGCTACCGAT
64 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGAT
* * * *
12916438 CCTGCTACCGCAACCTTCAGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CCTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
12916502 CAACCGAGGAAACGAGCGGGTGGATGGGCGGGCGGGCGGGCACTACGCCGGA-TAGAGAGACGGG
193 CAACCGACGAAACGA-C---AGG-CGGGCGGGCGGGCGGGCACTACGCC-GACCAGAGAGACGGG
*
12916566 ATGCGCAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
252 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
12916631 CAATTCCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCAT
317 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
12916696 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACAGTTCGAGATTTTTTAA
382 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTGACGGTTCGGGATTTTTTAA
* * * ** * *
12916761 AATTTTTTTGGAAGGAGTTTTGGTCGCAAACGCGGTAGACGTGATCCTTGTATTTTTTATGAGGG
447 AATTTTTTCGGAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-T-TGGC
* * * ****
12916826 ATAGGGGGC-CAATATAAGGGCCAAGTACCAGC-ACCCATCACATA-TC-ATATGCGCACACCCC
509 AT-----GCACAA-A-AA-----AA-T-TCAGCTA---A--A-A-ACTCGA-A-GTGTACAAGAT
** * * ** ***** * ** * * * *
12916887 CCTG-GCCCCTCCGATCGTCG-GAACCCCAACGTCACCGATTAGGTTCT-CTGGCGATGCTCCGG
551 TTTGTGACCATTTGAAAAAAGTG-TCCCC-ATTTCA--GA-CA-CTT-TAATGGC--TACT--GG
**** * ** *** *** **** * * * *
12916949 CGATGGTGCCCCGTCGAA-GAAAAATG-TGGC-ACCAGCACATGACCGAG--CCCAGCATGTGCT
605 C-A-GCAAACCTGTAAAATCTCAAATGCT--CTTTAAGGGGGTG--TGAGTTCTC-G-AGGT-TT
* **** * * * * * * *
12917009 GCTGCAACCCTCGGTCCGGTCCAGTCTTAGACTGGG--AA-TGA--A-CTCCGTAT-GCTTAGA-
661 GATG-AGGGATAGG---GGGCCAAT-ATA-A--GGGCCAAGT-ACCAGCACC-CATCGC--ACAT
* ** **** ** * * * * * * * *
12917066 C-TG-G-GAATCAACTTCGTATG-CCTTAGTCAACCCACGAA-ACGAACG-TG-CGGGC--G--C
714 CATGTGCGCA-C-ACCCCCCCGGCCCCGA-TCATCGC-GGAACCCCAATGCCGCCGGTCAGGTTC
* * * * ** ** * ** **** * * *
12917120 TCAACCG--GC-CAGAGGGCGGGATGCACAAGTCGGGGATCGGT-CGAGTC-CC-CCTC-TGCAC
775 TCCAGCGATGCTCCGA-CGATGG-TGC-CCTGACGAAGAAAAATGCG-G-CACCAGCACATGCCC
* * * * *
12917178 G-TCACCA--ATCCTGTTGCCGCAACCCTCGATCCGATCCGATCCGATCTTAGACTGGGAATGAA
835 GAGC-CCAGCAT-GTGCTGTCGCAACCCTCG----G-TCCGGTCCGATCTTAGACTGGGAATGAA
12917240 CTGC-GTATG
893 CT-CTGTATG
* * ** * * ** * * ** *
12917249 CCTAAGCCAACAGAAAAAAGGAGC-GGGCAGGCGGGC-ACAGT-ATTGGCCAGAGAGACTGCGAA
1 -CTTAG---ACTG--GGAATGAACTCTGTATGC---CTA-AGTCA--ACCCA-CGA-A-T-CG-A
* * *** * * ** *** * * * *** *
12917311 TCAACT-CTGTATGCTTAGACTGGGAATGA-ACTCCGTATGCCTAAGTCAACCCACAAAACGAGC
49 GC--GTGC-GGGCGCTCAG-CCGGCCA-GAGGGGCGGGATG-C---G-CAA-GC-C--GGGGATC
** * * * * * * * * **
12917374 GGTGCGGG-CGCTTAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGCTGGCTCCCTCT
100 GGT-CGGGTC-C--CCCT---C-TACGTGC----TGC-CGATCC--TG-CT-GC-CGCAACC-CT
* * * ** * * *
12917438 CTACGTGCTGCCGATCCTGCTATCGTA-ACCCTCGGTCTG--GTCCGATCTTAGACTTTGAATG-
146 C--GGT-CTG--G-T-CTG--ATCTTAGA--CTGGGAATGAACTCCG-T-AT-G-C-CT-AA-GC
** * ** * * * ** *
12917499 -AACTCTGTATGCCTAA-GCCAACCGATGAAACGAGCAGGC-GGC-CGGGCGGCGATCACTATGC
193 CAAC-C-G-A--CGAAACGACAGGCG--G--GCGGGCGGGCGGGCAC-TACGCCGA--------C
* * ** *
12917560 CAGCCAGAGATACGGGATGTGCAAGTCACGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCT
240 CAG--AGAG--ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
** * *
12917625 TCATATTTCTGTGTGCCAATACCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
301 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * * *
12917690 TCTCGTGAAGTTTCATGGCAGGACGACTCCTTTTGTATTTTTCACT-ATTTTTGAAACTTTTTAC
366 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTCGAAACTTTTGAC
* * * *
12917754 GATTCGGGATTTTTTAAAATTTTTTC-GTAGGGAATTTTGGCCCCAAACTTGGTGGACATGATCC
430 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGG--TTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * * *
12917818 TTGTATTTTTATTGGCAGGCACAAAAATATTCAGCAAAAAACTTGAAGTGTACAAGATTTTTGTG
493 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTG
12917883 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
557 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
12917948 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
622 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
12918013 GGCCAAGTACCATCACCCATCGCACATCCTGTGCGCACACCCCCTCGGCCCTC--CCGATCGTCA
687 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CGATC-ATCG-CG
* ** * * * ** * **
12918076 GAACCCCAATGCCGTCGAGTCAGGTTCTCTGGCGCTGCTCTGGCGATGGCACCCCGGTGAAGAAA
749 GAACCCCAATGCCGCCG-GTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCTGACGAAGAAA
* * ** * * * * *
12918141 AATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCCTCGATCCAGTTCGATCA
813 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCT
*
12918206 TAGATTGGGAATGAACTCTGTATG
878 TAGACTGGGAATGAACTCTGTATG
* * *
12918230 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAATCCACGAA-CAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCGCTCAGC
* * ** * * **
12918294 CAGCCAGAGGGGTGGGATGCGCAAGCCTAGGATCGGTCGGGTCCCCCACTGCGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
12918359 TGCTGTCGTAACCCTCAGTCTGGTCTGACCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
12918424 CTGACAAAATGAGCGGGCTGGCGGGCGCGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGA-CAGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
12918489 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
12918554 TTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTAATGGCAAGAT
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
12918619 GACTCGTTCTCTATTTTTCACGATTTTCGACACTTTT-TCTGGTTCGGGATTTTTTAAAATTTTT
390 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTGAC-GGTTCGGGATTTTTTAAAATTTTT
* * * * * **
12918683 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACCTAATCCTTGTGTTTTTTTTGGCATGCGTAAA
454 TCGGAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * *
12918748 AAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGCGACCATTTGAAAATAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* **
12918813 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTACGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
12918878 GTTCTTGATGTTTGATCAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * *
12918943 TCATGTGCGCACA-CCCCCCGGCCCC-CCCGATCGTAGGAACCCCAATGTCGCCGGTCAGGTTCT
713 TCATGTGCGCACACCCCCCCGGCCCCGATC-ATCG-CGGAACCCCAATGCCGCCGGTCAGGTTCT
* **
12919006 CCAGTGATGCTCCAACGATGCTCCGGTGATGGTGCCCTGACGAAGAAAAATAAGGCACCAGCACA
776 CCAGCGATGCT-C--CGA-----C---GATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACA
* * * *
12919071 TGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACT
830 TGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* *
12919136 CCGTACG
895 CTGTATG
* * * *
12919143 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCGCTCAGC
** * ** *
12919208 CGGCCAGAGGGGCGGGATTTGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * ** * *
12919273 TGCTGCCACAACCCTCAGTCCAGTCTGATCTTAAACTGGAAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
12919338 TCGACGAAACG--A-----GCGGACGGGCGGGCA-TGACGTC-AGCCAGAGAGACGGGATGCGCA
196 CCGACGAAACGACAGGCGGGCGGGCGGGCGGGCACT-ACGCCGA-CCAGAGAGACGGGATGCGCA
* ** *
12919394 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGTGTGCCAATGCT
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
12919459 ATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
12919524 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG-CGGTTCGGCA-TTTTTAAAATTTT
389 CGACTCGTTTTCTATTTTTCATGATTTTCGAAAC-TTTTGACGGTTCGGGATTTTTTAAAA-TTT
* * * * * * * *
12919587 TTTTGAAAGTAGTTTTGGCCCCAAAGTTGGTTGACGTGATCCTTTTGTTTTTGTTGGCATGCACA
452 TTTCGGAAG-GGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
*
12919652 AAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
12919717 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
12919782 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** * **
12919847 CATCATGTGAGTACACCCCCCCGGCCCCCTTGATCGCCGGAACCTTAATGCCGCCGGTCAGGTTC
711 CATCATGTGCGCACACCCCCCCGGCCCCGATCATCG-CGGAACCCCAATGCCGCCGGTCAGGTTC
** * * * * * *
12919912 T-TTGACGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGACACTAACACATGCCCGAGC
775 TCCAG-CGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* ** **
12919976 CCAGCATGTGCTGCCGCAAATCTCGGTCCGGTCCGATCTTAGA-TAGGGAATGAACTCCATATG
839 CCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGGAATGAACTCTGTATG
* * * * *
12920039 CTTAGACTCTGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGTGCTCAG
1 CTTAGACT-GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCGCTCAG
* * * * * * * * *
12920104 CCTGCCAGAGGGGCGGGATGCGCAA-CCTGGGGATCGATCGGGTCTCCTTCTGCATGCCGTCAAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGAT
* * *
12920168 CTTGCTGCCGTAACCCTCGGTCTGAT-TGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CCTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
12920232 CAACCGATGAAACG--A-----GCGGGCGGGCGGGCACTATGTCGGCCGGAGAGACGGGATGTGC
193 CAACCGACGAAACGACAGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGC
* *
12920290 AAGCCATGGATCGATAGGGTGGTAGGT-GGTTTGGGCACATCTTCATATTTCTGCATGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
12920354 CATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACGTGAATTTTCATGGTAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
12920419 ACGACTCGTTTTCTATTTTTCATGATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
388 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTGACGGTTCGGGATTTTTTAAAATTTT
* * * * *
12920484 TTTGAAAGTAGTTTT-GCCCCAAACTTGGTAGACATGATCCGTT-TATTTTTGTTGGCATGCACA
453 TTCGGAAG-GGTTTTGGCCCCAAACTTGGTAGACGTGATCC-TTGTATTTTTTTTGGCATGCACA
*
12920547 AAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
12920612 TTCAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCGAATGCTCTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
12920677 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* **
12920742 CATCATGTGCGCACACGCCCCCGGCCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
711 CATCATGTGCGCACACCCCCCCGGCCCCGATC-ATCG-CGGAACCCCAATGCCGCCGGTCAGGTT
* * * * * *
12920806 CTCCGGCGATGCTCCGACGATAGTGCCCTGACGAAAAAAAATACGACACCAGCACATGCCCGAGT
774 CTCCAGCGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
12920871 CCAGCATGTGCTATTGTAAACCTCGGTCCGGTCTGATCTTAGACGGGGAATGAACT-TCGTATG
839 CCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT-GTATG
* *
12920934 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAATCGAG
12920983 AGACGTGATG
Statistics
Matches: 9114, Mismatches: 1254, Indels: 1046
0.80 0.11 0.09
Matches are distributed among these distances:
849 1 0.00
850 74 0.01
851 4 0.00
852 2 0.00
853 1 0.00
855 1 0.00
856 1 0.00
858 1 0.00
860 2 0.00
861 96 0.01
863 1 0.00
865 128 0.01
866 30 0.00
867 89 0.01
868 131 0.01
869 266 0.03
870 15 0.00
871 73 0.01
872 27 0.00
873 92 0.01
874 183 0.02
875 21 0.00
876 190 0.02
877 16 0.00
878 415 0.05
879 393 0.04
880 15 0.00
881 1 0.00
882 1 0.00
884 5 0.00
885 143 0.02
886 22 0.00
887 85 0.01
888 65 0.01
889 413 0.05
890 165 0.02
891 5 0.00
892 18 0.00
893 28 0.00
894 106 0.01
895 429 0.05
896 352 0.04
897 262 0.03
898 284 0.03
899 3 0.00
900 47 0.01
901 144 0.02
902 227 0.02
903 59 0.01
904 425 0.05
905 914 0.10
906 937 0.10
907 277 0.03
908 1 0.00
909 4 0.00
910 1 0.00
911 9 0.00
912 81 0.01
913 209 0.02
914 138 0.02
916 7 0.00
917 7 0.00
918 8 0.00
919 15 0.00
920 14 0.00
921 2 0.00
922 3 0.00
923 5 0.00
924 7 0.00
925 2 0.00
926 10 0.00
927 5 0.00
928 8 0.00
929 15 0.00
930 9 0.00
931 7 0.00
932 4 0.00
933 7 0.00
934 23 0.00
935 15 0.00
936 18 0.00
937 27 0.00
938 8 0.00
939 40 0.00
940 8 0.00
941 6 0.00
942 5 0.00
943 8 0.00
944 10 0.00
945 5 0.00
946 2 0.00
947 7 0.00
948 5 0.00
949 1 0.00
950 1 0.00
951 1 0.00
952 1 0.00
953 7 0.00
954 9 0.00
955 8 0.00
956 10 0.00
957 4 0.00
958 3 0.00
959 1 0.00
960 1 0.00
961 2 0.00
962 4 0.00
963 8 0.00
964 7 0.00
965 7 0.00
966 7 0.00
967 1 0.00
968 2 0.00
970 4 0.00
971 3 0.00
972 11 0.00
973 9 0.00
974 13 0.00
975 22 0.00
976 14 0.00
977 14 0.00
978 6 0.00
979 9 0.00
980 15 0.00
981 43 0.00
982 9 0.00
983 16 0.00
984 7 0.00
985 16 0.00
986 25 0.00
987 3 0.00
988 3 0.00
989 7 0.00
990 10 0.00
991 19 0.00
992 7 0.00
993 8 0.00
994 1 0.00
995 6 0.00
996 6 0.00
997 8 0.00
998 8 0.00
999 9 0.00
1000 1 0.00
1001 2 0.00
1002 2 0.00
1003 3 0.00
1004 3 0.00
1006 2 0.00
1008 8 0.00
1009 5 0.00
1010 221 0.02
1011 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGACAGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTGACGGTTCGGGATTTTTTAAAATTTTTTC
GGAAGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCGATCATCGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGC
GATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
Found at i:12911018 original size:26 final size:26
Alignment explanation
Indices: 12910979--12911031 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12910969 CCGGTCCGAT
*
12910979 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
12911005 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12911031 C
1 C
12911032 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:12912780 original size:26 final size:26
Alignment explanation
Indices: 12912744--12912794 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
12912734 GGTCCGATCC
12912744 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
12912770 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
12912795 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:12913686 original size:26 final size:26
Alignment explanation
Indices: 12913647--12913699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12913637 CCGGTCCGAT
*
12913647 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
12913673 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12913699 C
1 C
12913700 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:12917063 original size:26 final size:27
Alignment explanation
Indices: 12917034--12917091 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
12917024 CCGGTCCAGT
*
12917034 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATCAACTCCGTATGC
*
12917060 CTTAGACTGGGAATCAACTTCGTATGC
1 CTTAGACTGGGAATCAACTCCGTATGC
12917087 CTTAG
1 CTTAG
12917092 TCAACCCACG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATCAACTCCGTATGC
Found at i:12917337 original size:26 final size:26
Alignment explanation
Indices: 12917301--12917350 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
12917291 TTGGCCAGAG
*
12917301 AGACTGCGAATCAACTCTGTATGCTT
1 AGACTGCGAATCAACTCCGTATGCTT
* *
12917327 AGACTGGGAATGAACTCCGTATGC
1 AGACTGCGAATCAACTCCGTATGC
12917351 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
AGACTGCGAATCAACTCCGTATGCTT
Found at i:12918242 original size:26 final size:26
Alignment explanation
Indices: 12918206--12918256 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12918196 AGTTCGATCA
* *
12918206 TAGATTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCTATATGCT
12918232 TAGACTGGGAATGAACTCTATATGC
1 TAGACTGGGAATGAACTCTATATGC
12918257 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTATATGCT
Found at i:12920945 original size:26 final size:26
Alignment explanation
Indices: 12920908--12920960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12920898 CCGGTCTGAT
*
12920908 CTTAGACGGGGAATGAACTTCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
*
12920934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
12920960 C
1 C
12920961 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:12922534 original size:26 final size:26
Alignment explanation
Indices: 12922505--12922557 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12922495 CTGGTCCGAT
* *
12922505 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12922531 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12922557 C
1 C
12922558 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12924022 original size:26 final size:26
Alignment explanation
Indices: 12923992--12924044 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12923982 CCGATCTGAT
*
12923992 CTTAGACTGTGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
12924018 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
12924044 C
1 C
12924045 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:12924942 original size:26 final size:26
Alignment explanation
Indices: 12924893--12924943 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
12924883 AGTTCGATCA
* *
12924893 TAGACTGGGACTGATATCCGTATGCT
1 TAGACTGGGAATGATATCCATATGCT
12924919 TAGACTGGGAATGA-ACTCCATATGC
1 TAGACTGGGAATGATA-TCCATATGC
12924944 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGATATCCATATGCT
Found at i:12925595 original size:899 final size:898
Alignment explanation
Indices: 12923667--12926719 Score: 4259
Period size: 899 Copynumber: 3.4 Consensus size: 898
12923657 TCGAAAGGAG
* *
12923667 TTTTGTGACCATTTGAAAAAAGTGTCGCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
12923732 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
12923797 ATATAAGGGCCAAGTACCCGTACCCATCGCACATGATGTGCGCACACCCCCCGGTCCCCCGATCG
131 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
* * * * * *
12923862 TCGAAACCCAAATGTCACCGGTTAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCTG-TAAAG
196 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCC-GACAAAG
* ** * * * *
12923926 AAAAATGCAGCACCAGCACATGCCCGAGCAAAGCCTGTGCTGCCGTAACCCTTGCTCCGATCTGA
260 AAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCTGA
* * *
12923991 TCTTAGACTGTGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACC
325 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * * * * *
12924056 CATGAAACGAGCGTACGGGCGCTTAGCTGGCCAGAGGGGTAGGATGTGCAAGTCGGGGATTGGCC
390 CACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGATGTGCAAG-CTGGGATCGGCC
* * * * * * * *
12924121 AGCTCCTCCTCTGCGTGCTGCTGATGCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTG
454 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCG-TCTGGTCTGATCTTAGACTG
* * ** *
12924186 GGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGTAGGCGGGCGGGCGAGCGACCACTA
518 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGAGCG-GCACTA
* * * * * * * *
12924251 CGCCAGCCAGAGATACGGGTTGTGCAAGTCGCGGATCGATA-GGTTGTAGGTGGGTTTAGGCACA
582 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
12924315 TCTTCATATTGCTGCGTGCCAATGCCATTCTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAG
647 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
12924380 CCTTCACGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCACTATTTTTGAAACTTTCT
712 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * * * *
12924445 ACGATTGGGGAATTTTTT-AAATTTTTTTGTAAGGAATTTTGGCCCCAAACTTGGCAGACATGAT
777 ACGGTTCGAG-ATTTTTTAAAATTTTTTAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * *
12924509 CCTTGTATTTTTGTTGGCAGGCACAAAAATATTCAGCTAAAAACTT-GAAGTGTACAAGA
840 CCTTGTTTTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAA-TTCAAAGTGTACAAGA
* *
12924568 TTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
12924633 GTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
12924697 ATATAAGGGCCAAGTACCATCACCCATCGCACATCATATGCGCACA-CCCCTGGCCCCCCGATCG
131 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
* ** * * * * *** ***
12924761 TCAGAACCTTAATGCTGTCGGTCAGGTTCTCTGGCGCTGCTCCGGTGATGGCAACCCGGTGAAGA
196 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGACAAAGA
* * *
12924826 AAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTAGTTC-GA
261 AAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATC-CGATCTGA
* * **
12924890 TCATAGACTGGGACTGATA-TCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
325 TCTTAGACTGGGAATGA-ACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* * * * *
12924954 CCACGAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGTGCAAGCCTAGGATCGGT
389 CCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGATGTGCAAG-CTGGGATCGGC
* * * * *
12925019 CGGGTCCCCCACTACGTGCTGCCGATCCTGTTGTCGCAACCCTCAGTCTGGTCTGACCTTAGGCT
453 CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTC-GTCTGGTCTGATCTTAGACT
*
12925084 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGAGCAGGCACT
517 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGAGC-GGCACT
12925149 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
581 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
12925214 ATCTTCATATTTCTGCATG-CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
646 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
12925278 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTT
711 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * *
12925343 TGCGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAATCTTGGTAGCCGTGAT
776 TACGGTTCGAGATTTTTTAAAATTTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
12925408 CCTTGTTTTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAATTCCAAGTGTACAATA
840 CCTTGTTTTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAATTCAAAGTGTACAAGA
* *
12925467 TTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACCT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
12925532 GTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
12925596 ATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGTACACCCCCCGGCCCCCTCGATC
131 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCC-CGATC
12925661 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGACAAAG
195 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGACAAAG
* * * * * *
12925726 AAAAATGCGGCACTAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGA
260 AAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCTGA
12925791 TCTTAGA-TAGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
325 TCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* * *
12925855 CCACGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAAGGGTGGGATGTGCAAGCTGGGGATCGAC
389 CCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGATGTGCAAGCT-GGGATCGGC
* * * *
12925920 CGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGGTC-AATGTTAAAC
453 CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTC-GTCT-GGTCTGATCTTAGAC
* * *
12925984 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGGCGGGC---CGGCATT
516 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGAGCGGCACT
12926046 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
581 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* ** *
12926111 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATATCTTCTAAATTCATACAATGGTCCCTTAA
646 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
12926176 GCCTTCACGTGAAGTTACATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
711 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
12926241 TACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCCCCAAACTTGGTAGACGTAAT
776 TACGGTTCGAGATTTTTTAAAA-TTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
*** * *
12926306 CCTCAATTTTTTGTTGGCATGCAC-AAAACAATTAAGCTAAAAACTCGAAAGTGTACAAGA
840 CCTTGTTTTTTTGTTGGCATGCACAAAAAC-ATTCAGCTAAAAATTC-AAAGTGTACAAGA
* *
12926366 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGTAAACCT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
12926431 GTAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
12926496 ATATAAGGGCCAAGAACCAGCA-CCTTCACACATCATGTGCGCACACCCCCCCTGGCCCCCCCGA
131 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCC-GG-CCCCCCGA
* * * * * * *
12926560 TAGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTACGGAGATGGTGCCCCAACGA
193 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGACAA
* * * * *
12926625 AGAAAAATGTAGCACCAGCACATGCTCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCCGATCC
258 AGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCT
*
12926690 CATCTTAGACTGGGAATGAACTCCGTATGC
323 GATCTTAGACTGGGAATGAACTCCGTATGC
12926720 CTAAGTCAAC
Statistics
Matches: 1912, Mismatches: 214, Indels: 52
0.88 0.10 0.02
Matches are distributed among these distances:
897 92 0.05
898 232 0.12
899 815 0.43
900 178 0.09
901 585 0.31
902 10 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
TCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGACAAAGA
AAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCTGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
ACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGATGTGCAAGCTGGGATCGGCCGG
GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGTCTGGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGAGCGGCACTACGTC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
TTCGAGATTTTTTAAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
TTTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAATTCAAAGTGTACAAGA
Found at i:12925821 original size:26 final size:26
Alignment explanation
Indices: 12925792--12925844 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12925782 CCGGTCTGAT
12925792 CTTAGA-TAGGGAATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
*
12925818 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12925844 C
1 C
12925845 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12927425 original size:26 final size:26
Alignment explanation
Indices: 12927389--12927441 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12927379 CCAGTCTGAT
12927389 CTTAGACTGGGAATGAAC-TCCGTATG
1 CTTAGACTGGGAATGAACAT-CGTATG
12927415 CTTAGACTGGGAATGAACATCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
12927441 C
1 C
12927442 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCGTATG
Found at i:12929215 original size:26 final size:26
Alignment explanation
Indices: 12929186--12929238 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12929176 CCAGTCCGAT
* *
12929186 CTTAGACTGGGAATTAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
12929212 CTTATACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
12929238 C
1 C
12929239 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:12929496 original size:907 final size:891
Alignment explanation
Indices: 12926795--12930433 Score: 4932
Period size: 907 Copynumber: 4.1 Consensus size: 891
12926785 GAGGATCGGT
* * *
12926795 TGGGTTTAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCATATAAATTCATAC
1 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
12926860 AATGGTCCCTTGAGCCCTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGAT
66 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGAT
** * * *
12926925 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCAAAACT
131 TTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * * * *
12926990 TGGAAGACGTGATCCTTTTAATTTTTTTTTTGCATGCACAAAAAAATTCAGCTAAAAAATAGAAC
196 TGGTAGACGTGATCCTTGT-A-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
12927055 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
259 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
12927120 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
324 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
12927185 AGGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
389 AGGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * *
12927250 CCTCGATCGCCTGAACCCAAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
454 CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG---T-------T-CTCCGACGATGGTGCCC
* * * * *
12927315 CGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAAACCTTGGTC
508 CGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
* *
12927380 CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACAT-CGTATGCCT
573 CAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC-TCCGTATGCCT
* * * *
12927444 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGA
637 AAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCAGG
* * * * **
12927509 GGATCGGTCGGGTCCCCTTCTGCATGCT-GCTGATCCTGCTACTGTAACCCTCGGTCTGGTCTGA
702 GGATCGGTCGGGTCCCCCTCTGCGTGCTGGC-CATCCTGCTACCGTAACCCTCAATCTGGTCTGA
* ** * ** * *
12927573 TCTTAGACTGGGAATGAACTATGTATGCCTAAGCCAATCGACGAAACGAGCGGGTGGACGGGTGG
766 TCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAGGCGGACGGGCGG
* * *
12927638 G-GGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGATGGTAGG
831 GCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
12927698 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
1 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
12927763 AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
66 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGAT
** * * *
12927828 TTTTGAAACTTTTGGCGGTTC-AGTATTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCCAGAC
131 TTTCAAAACTTTTTGCGGTTCGAG-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
12927891 TCGATAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
195 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
12927956 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACAATTTAATGGCTACTGGCG
260 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
12928021 GCAAACCTGTAAAATCTCCAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
325 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
12928086 GGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCATATCATGTGCGCACACCCCCCGGCCC
390 GGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * *
12928151 CGCCGATCGCCAGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGGTGCCCCGGCGAAGAAA
455 C-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAA
* * * *
12928216 AATGTGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGAGTCCTATCT
519 AATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCT
* * * *
12928281 TATACTGGGAATGAACTTCATATGCTTAGACGGGGAATGAACTCCATATGCCTAAGTCAACCCAC
584 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * *
12928346 GAAACGAGCGTGCGGGCACTCAG-CTGACCAAAAGGGCGGGATGCGCATGCAGGGGATCGGTCGG
649 GAAACGAGCGTGCAGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGGTCGG
* * * ** * *
12928410 GTCCCCCTCTGCGTGCTGCCCATCCTACTCCCGTAACCCTTGAT-TCAGTCTGATCATAGATTGG
713 GTCCCCCTCTGCGTGCTGGCCATCCTGCTACCGTAACCCTCAATCT-GGTCTGATCATAGACTGG
* *
12928474 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACTAGTGGGCGGACAGGCGGGCGGGCGGGCA
777 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAGGCGG--A--CGGGCGGGCGGGCA
* *
12928539 CTACGTCGGCCAGAAAGGC-GGAATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
838 CTACGCCGGCCAGAGAGGCAGG-ATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* **
12928593 TGGGTTTAGGCACATTTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
1 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * **
12928658 AATTGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCAATTTCTATTTTTCACGAT
66 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGAT
* * * * *
12928723 TTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTTGGTAGGATTTTTGGCCCCAAACT
131 TTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
12928788 TGGTAGTCATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATG
196 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
12928853 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAA
261 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
12928918 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGAATAG
326 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
12928983 GGGGCCAATATAAGGGCCAAGTACCAT-CACCCATCGCACATCATGTGTGCACACCCCCCGGCTC
391 GGGGCCAATATAAGGGCCAAGTACC-TGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-C
* *
12929047 CCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCAGCGATGGTGCCC
454 CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC---C---G----A-CGATGGTGCCC
** * ** *
12929112 CGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTTCTACCTTAACCCTCGATC
508 CGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
* * *
12929177 CAGTCCGATCTTAGACTGGGAATTAACTCCATATGCTTATACTGGAAATGAACTCCGTATGCCTA
573 CAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
12929242 AGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGATGGGCGGGATGCACAAGCAGGG
638 AGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCAGGG
* * **
12929307 GATCGGTCGGGTCCCCCTCTACGTGCTGGCCATCCTGCTGCCGTAATACTCAATCTGGTCTGATC
703 GATCGGTCGGGTCCCCCTCTGCGTGCTGGCCATCCTGCTACCGTAACCCTCAATCTGGTCTGATC
* *
12929372 ATAGACTGGTAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTAGGCGGACGGATGGAC
768 ATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAGGCGGAC-G--GG-C
* *
12929437 GGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
829 GGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
12929500 TGGGTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCATTTTTATGGCTTGTAAATTCATAC
1 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
12929565 AATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGGAAGA-CACTCGTTTTTTATTTTTCACGAT
66 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGAT
* * *
12929629 TTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGTAGGAGTTTTGGCCCCAAACT
131 TTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
12929694 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTT
196 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
12929759 TACAAGATTTTGTGACCACTTGAAAATAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAG
261 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
12929824 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
326 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
12929889 GGGGCCAATATAAGGACCAAGTGCCTGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCC
391 GGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGG-C
* * *
12929954 CCCCCGATCGCCGGAACCCCAATGCCGTCGGCCAAGTTCTCCGACGATGGTGCCCCGGCGAAGAA
453 CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAA
12930019 AAATGTGGCACCAGCACATG-TCGAGCCCAGCATGTGCTACCGCAA-CC-C--T-C-G---G---
518 AAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATC
* **
12930071 -T---CT--G---G---TCCA-A-ACTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCA
583 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* ** * * *
12930122 CAAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGGGGCTGGATGCGCAAGCCGGGGATCGGCCGG
648 CGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGGTCGG
* * * * * * * *
12930187 GTCCCCCTCTGCGTGCTGTCAATCCTGCTACCGCAACCTTCAGTTTGGTCCGATCTTAGACTGGG
713 GTCCCCCTCTGCGTGCTGGCCATCCTGCTACCGTAACCCTCAATCTGGTCTGATCATAGACTGGG
* *
12930252 AATGAACTTCGTATGCCTAAGCCAACCGAGGAAAC-A--A-GCAGG-CGGGCGGGCGGGCACTAC
778 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAGGC-GGACGGGCGGGCGGGCACTAC
** * ** *
12930312 GTTGGCCTGAGAGGCAGGATATGCAAGCCGTGGATCGATAGGGTGGCAGG
842 GCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
12930362 TGGGATTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
1 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
12930427 AATGGTC
66 AATGGTC
12930434 AGATGTTAGA
Statistics
Matches: 2447, Mismatches: 250, Indels: 119
0.87 0.09 0.04
Matches are distributed among these distances:
862 123 0.05
863 2 0.00
865 1 0.00
866 3 0.00
867 3 0.00
869 1 0.00
870 177 0.07
871 1 0.00
872 4 0.00
878 1 0.00
880 2 0.00
883 1 0.00
887 1 0.00
889 3 0.00
890 285 0.12
891 3 0.00
892 2 0.00
894 10 0.00
895 198 0.08
896 322 0.13
897 41 0.02
898 2 0.00
899 1 0.00
900 228 0.09
901 29 0.01
902 46 0.02
903 151 0.06
904 1 0.00
905 3 0.00
906 315 0.13
907 442 0.18
908 44 0.02
909 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGAT
TTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAA
TGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTA
GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGGTCGGGTC
CCCCTCTGCGTGCTGGCCATCCTGCTACCGTAACCCTCAATCTGGTCTGATCATAGACTGGGAAT
GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAGGCGGACGGGCGGGCGGGCACTACGCCG
GCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
Found at i:12930599 original size:201 final size:197
Alignment explanation
Indices: 12930232--12930632 Score: 541
Period size: 201 Copynumber: 2.0 Consensus size: 197
12930222 ACCTTCAGTT
* * * *
12930232 TGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGAGGAAACAAGCAGGCGG
1 TGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCAG
** * * **
12930297 GCGGGCGGGCACTACGTTGGCCTGAGAGGCAGGATATGCAAGCCGTGGATCGATAGGGTGGCAGG
66 GCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATACACAAGCCGTGGATCGATAGGGTGGCAGG
* * * * *
12930362 TGGGATTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
131 TGGGATTAGGCACAGCTTCATAATTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATAC
12930427 AA
196 AA
* * *
12930429 TGGTCAGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGG
1 TGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AA---GCAG
* ** *
12930494 GCAGGCGGGCGGGCACTATGCCGGCCAGAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGG
62 GCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATACACAAGCCGTGGATCGATAGGGTGG
* * *
12930559 TAGGTGGGTTTAGGCACAGCTTCATAATTCTACATGCCAATACCATTTTTTTGGCTTGTAAATTC
127 CAGGTGGGATTAGGCACAGCTTCATAATTCTACATGCCAATACCATTTTTATGGCTTGTAAATTC
12930624 ATACAA
192 ATACAA
12930630 TGG
1 TGG
12930633 CCCTTAAGCC
Statistics
Matches: 175, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
197 50 0.29
198 2 0.01
201 123 0.70
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (197 bp):
TGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCAG
GCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATACACAAGCCGTGGATCGATAGGGTGGCAGG
TGGGATTAGGCACAGCTTCATAATTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATAC
AA
Found at i:12932059 original size:184 final size:182
Alignment explanation
Indices: 12931709--12932075 Score: 536
Period size: 184 Copynumber: 2.0 Consensus size: 182
12931699 CCAACGGACA
* *
12931709 TCATGTGCGCACACCCCCACCGGCCCCCCGATCGCCGGAACCCCAATGTCGCCAGTCAGGTTCTT
1 TCATGTGCGCACACCCCCACCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTC
** *
12931774 CGATGATGCTCCGGCGATGGTGCCTGGACGAAGAAAAATGCTACACCAACACATACCCGAGCCCA
66 CGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATACCCGAGCCCA
*
12931839 GCATGTGCTGCCACAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAAC
131 GCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC
* * * * * *
12931891 TCATGTGTGCACACCCCCCCCGGCCACCCTCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTC
1 TCATGTGCGCACACCCCCACCGGCC-CCC-CGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTC
* * * *
12931956 TCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
64 TCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATACCCGAGCC
* * * *
12932021 CAGCATGTGCTGTCGCAACCCTTGGTCTAGTCCGATCTTAGACTGGGAATGAAC
129 CAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC
12932075 T
1 T
12932076 TCGTATGCTT
Statistics
Matches: 163, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
182 23 0.14
183 3 0.02
184 137 0.84
ACGTcount: A:0.22, C:0.34, G:0.25, T:0.19
Consensus pattern (182 bp):
TCATGTGCGCACACCCCCACCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTC
CGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATACCCGAGCCCA
GCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC
Found at i:12932108 original size:26 final size:26
Alignment explanation
Indices: 12932057--12932109 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12932047 CTAGTCCGAT
*
12932057 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
12932083 CTTAGATTGGGAATGAAGTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12932109 C
1 C
12932110 CCAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12933609 original size:26 final size:26
Alignment explanation
Indices: 12933580--12933632 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12933570 CTGGTTCGAT
*
12933580 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
12933606 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
12933632 C
1 C
12933633 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:12934070 original size:32 final size:32
Alignment explanation
Indices: 12934026--12934099 Score: 121
Period size: 32 Copynumber: 2.3 Consensus size: 32
12934016 CACATGCCCG
*
12934026 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
1 AGCCCAGCATGTGCTGCCGCAACCCTAGGTCC
* *
12934058 AGTCCAGCATGTGCTGTCGCAACCCTAGGTCC
1 AGCCCAGCATGTGCTGCCGCAACCCTAGGTCC
12934090 AGCCCAGCAT
1 AGCCCAGCAT
12934100 ACGGAGTTCG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.19, C:0.39, G:0.24, T:0.18
Consensus pattern (32 bp):
AGCCCAGCATGTGCTGCCGCAACCCTAGGTCC
Found at i:12934134 original size:26 final size:26
Alignment explanation
Indices: 12934098--12934147 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12934088 CCAGCCCAGC
* *
12934098 ATACGGAGTTCGTTCCTAGTCTAATT
1 ATACGGAGTTCATTCCCAGTCTAATT
12934124 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
12934148 GATCAGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAATT
Found at i:12935049 original size:26 final size:26
Alignment explanation
Indices: 12934999--12935051 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12934989 TTTGACTTAC
***
12934999 GCATACGGAGTTAATTCCTTGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
*
12935025 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
12935051 G
1 G
12935052 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:12937494 original size:26 final size:26
Alignment explanation
Indices: 12937458--12937510 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12937448 GTTGACTTAG
*
12937458 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12937484 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12937510 G
1 G
12937511 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12939237 original size:26 final size:26
Alignment explanation
Indices: 12939207--12939259 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12939197 GTTGACTTAG
* * *
12939207 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12939233 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
12939259 G
1 G
12939260 AACGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:12939704 original size:892 final size:888
Alignment explanation
Indices: 12938501--12942821 Score: 5500
Period size: 892 Copynumber: 4.9 Consensus size: 888
12938491 AGAGGGGGCC
12938501 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCC
*
12938566 CTCATCAAACTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
12938631 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
12938696 GAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATGACGTCTGCCAAGTTTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
12938761 GGGCCAAAACTCCATCCGAAAAAATTTTAAAAATTCCCGAACCGAAAAAAGTTTCAAAAATCGTG
260 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA-TCCCGAACCGCAAAAAGTTTCAAAAATCATG
* *
12938826 AAAAATAGAAAACGGGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
12938891 ATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
12938956 ACCTTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCCA
454 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-GCCCGCCCGCCCGCC-
* * * *
12939021 ACGTGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGA
517 -C-TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGA
* * * *
12939086 TCAAGGTTTGCGGTAGCAGGATCGGCAACACGCAGAGGGGGACCCGACCGATCCTCGGCTTGAGC
580 CCAAGGTTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * * *
12939151 ATCCCGTCCCTCTGGCCGGCTGTGCACCTGCACGCTCATTTCATGAGTTGACTTAGGCATACGGA
645 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
* * *
12939216 GTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGAACGAACCGGACCGAGGGTTA
710 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTG
* * * *
12939281 AGACAGCACATGCTGGGATCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGC
775 CGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-
* * * *
12939346 CGGAGCATCGCCGGAGAACCTGACCAACGGCATTGTGGTTCCGGCGAT-A
839 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCA
* * *
12939395 -GGGGGTGTGCGCACATGATGTGTGATGTGTGCTGGTACTTGACCCTTATATTGGCCCCTATCCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCC
* * *
12939459 TCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGGATTTGAGATTTTACAGGTTTGCTGTCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
12939524 TAGCCATTAAAGTGTCTGAAATGGGGACACCTCTTTCAAATGGTCACAAAATCTTGTACACTTCG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *** *
12939589 A-TTTCTTAGCTGAATTTTTTTTTGCATGCTGGAAAAACTACAAGGATCACGTCTACCAAGTTTG
196 AGTTT-TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
*
12939653 GGGCCAAAACAT-CTTCCGAAAAAATTTTGAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
260 GGGCCAAAAC-TCCTTCCGAAAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
*
12939717 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
12939782 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAACATGTGCCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
12939847 CACCTTATCGATCCACAGCATGCGCATCCCGTCTCTCTGG-C--C-T----------GCCCGCCC
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGGCCCGCCCGCCCGCCC
* * *
12939898 -GCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGA-CAGGACCAGACC
518 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACTAGACC
* * * ** * **
12939961 GAGGGTTGCAGTAGCAGGATCGATAGCACGCAGAGTGGGACCCGGTCGATCCCCGGCTTGCGCAT
582 AAGGTTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * * *
12940026 CCCGCCCCTCTGACCGGCTGGGCACCCGCATGCTCATTTCGTGGGTTGACTTTGGCATACGAAGT
647 CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* *
12940091 TCATTCCCATTCTAAG-AT-C--AG----------A-C-----T-G-A----ACCGAGTGTTGCG
712 TCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCG
* * **
12940130 GTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGG---CA---C--
777 GCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCGG
* *
12940187 --CATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGATGATC-
842 AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCA
*
12940231 GAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATC
* *
12940296 CCTCACCAAACGTCGA-AGACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
64 CCTCATCAAACCTCGAGA-ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
12940360 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
128 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
12940425 TCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAGAAGGATCACGTCTAACAAGTT
193 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * *
12940490 TGGGGCCAAAAATCCTTCC-AAAATATTTTAGAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
258 TGGGGCCAAAACTCCTTCCGAAAAAATTTTA-AAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * * * **
12940554 TAAAAAATTGAAAACGAGTCGTCTTATCC-CGAAACTTCTTGTGAAGGCTTAAGGGACCATTGTA
322 TGAAAAATAGAAAACGAGTCGTCTT-GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
12940618 TGAATTTACAAGCCATAAAAGTGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCT
386 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
12940683 ACTACCCTATCGATCCACGGCTTGCTCATCCTGTCTCTCTTGCCGACGTAGTGCCCGCCCGCCCG
451 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-GCCCGCCCG--C-
*
12940748 TCCGCCCGTTCGCTTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTC
512 -CCG--C---C-C-T----GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * * * *
12940813 CAAGATCAGA-TCAGATCGAGGGCTGTGACAGT-G-A-GATTGGTAGCATGTAGAGGGGGACCCG
565 TAAGATCGGACT-AGA-CCAAGG-TTTG-CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * * * *
12940874 ACCGATCCCCCGCTTGTGCATCCTGTCCCTCTGGCCGACTGAGCACCCGCACGTTCTTTTCGTGG
626 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGG
* * * *
12940939 GTTGACTTAGGCATACGGAGTTCATTCCCAG-CTAAGCATACGGAGTTCATTCCCAGTTTGAGAT
691 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGAT
* * *
12941003 CGAACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGGGCCGCATTTTTC
756 CGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCACATTTTTC
* * *
12941068 TTTGTCGGGGCACCATCGTCGGAGCATCGTCGGAAAACCTGACCGACGGCAGTGGGGTTCCGACG
821 TTCGTCGGGGCACCATCG-CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
*
12941133 ATAGGGGGGTCG
885 --A------TCA
* *
12941145 GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGACCCCTATCCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCC
* * *
12941210 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGTTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
12941275 TAGCCGTTAAAGTGTTTGAAATGGGGACACTTTTTTTCAAATGGTCACCAAATCTTGTACACTTC
131 TAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
12941340 GAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
** * *
12941405 CAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATC
260 GGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
* *
12941470 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
12941535 ATTTACAAGCCATTAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
12941600 ACCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTGGTCGGCATAATGCCCGCCCGCCCGACC
454 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-AGGCCCGCCCGCCCG--C
* * *
12941665 GCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCTGTCTAAGATCGGAC
516 -CCT----GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * *
12941730 TGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTT
576 TAGACCAAGGTTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * * * *
12941795 GTGCATCCCGCTCCTCTGGCCTGCTGAGCACCCGCACACTTATTTCGTAGCTTGACTTAGGCATA
641 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* * * * *
12941860 CGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGG
706 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGG
* *
12941925 GTTGCGGCAGCACATGCTGGGCTC-AGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACC
771 GTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACC
* *
12941989 ATCGTGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTCA
835 ATCGCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTT-C--CGA-C-----GATCA
* *
12942052 GGGGCGGTGTGCACACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATC
1 GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATC
12942117 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
64 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
12942182 AGTAGCCATTAAAGTGTCTGAAAGGGGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTT
129 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
12942246 CGAGTTTTTAGATGAATTATTTTGTGCATGCCAAAAAAAATACAAGGATCACGACTACCAAGTTT
194 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* ** * *
12942311 GGGG-CAAAACCCCTTCCGAAAAAATTTTAAAAAATCTTGAACCG-TAAAAGTTTCAAAAATCGT
259 GGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* *
12942374 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGACTTAAGGGACCATTGTATG
323 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
12942439 AATTTACAAGCCATAATAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
388 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
12942504 CACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGGCGTA-G--TGCTCGCCCG-CC
453 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGGCCCGCCCGCCCGCCC
* * * * * *
12942565 TGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGAACCAGACCG
518 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCA
* ** *
12942630 A-GTGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
583 AGGT-TTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * * * *
12942694 CCCGCCCCTCTGGTCGGTTTAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATAC-GAGT
647 CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * * *
12942758 TCATTCCCAGTCTAAGCATAC-AGAGTTCATTCCTAGTCTCAGATCGGATCGGATCGAGGGTTGC
712 TCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGC
12942822 AACAACAGGA
Statistics
Matches: 2984, Mismatches: 323, Indels: 242
0.84 0.09 0.07
Matches are distributed among these distances:
836 37 0.01
837 1 0.00
838 244 0.08
839 200 0.07
840 4 0.00
841 1 0.00
842 1 0.00
844 2 0.00
847 57 0.02
851 1 0.00
852 1 0.00
853 1 0.00
855 1 0.00
857 3 0.00
858 1 0.00
859 2 0.00
862 1 0.00
863 1 0.00
868 5 0.00
869 159 0.05
870 6 0.00
871 4 0.00
872 8 0.00
873 178 0.06
875 1 0.00
877 7 0.00
888 2 0.00
889 2 0.00
890 1 0.00
891 4 0.00
892 462 0.15
893 215 0.07
894 58 0.02
897 5 0.00
901 9 0.00
903 4 0.00
904 4 0.00
905 224 0.08
906 238 0.08
907 196 0.07
908 60 0.02
909 101 0.03
910 6 0.00
912 97 0.03
913 161 0.05
914 205 0.07
915 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (888 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGGCCCGCCCGCCCGCCCTGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGG
TTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
CCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCGGCAG
CACATGCTGGGCTCGAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCGGAGCA
TCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCA
Found at i:12941891 original size:26 final size:26
Alignment explanation
Indices: 12941855--12941907 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12941845 CTTGACTTAG
12941855 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12941881 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12941907 G
1 G
12941908 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12942016 original size:906 final size:894
Alignment explanation
Indices: 12940080--12942821 Score: 3647
Period size: 906 Copynumber: 3.1 Consensus size: 894
12940070 GTTGACTTTG
* * * * * * *
12940080 GCATACGAAGTTCATTCCCATTCTAAGATCAGACTGAACCGAGTGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
12940145 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGG---CA-C------CATCGTCGGAGAA
66 CTC-GGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTGGAGCATCGTCGGAGAA
* * * *
12940200 CCTGACCGACGACATTGGGGTT-C-CGAT----GATCGAGGGGGTGTGCGCACATGATGTGTGAT
130 CCTGACCGACGGCATTGGGGTTCCGCGATGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGAT
* * *
12940259 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACGTCGA-AGACTCACACC
195 GGGTGCTGGTACTTGGCCCTTATATT-GACCCCTATCCCTCATCAAACCTCGAGA-ACTCACACC
12940323 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
12940388 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGC
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
12940453 ATGCCAAAAAAAATAGAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTCCAAAATATTT
388 ATGCCAAAAAAAATACAAGGATCACGTCT-ACAAGTTT-GGGCCAAAACTCCTTCGAAAAAATTT
* * *
12940518 TAGAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATTGAAAACGAGTCGTCTTATCC
451 TAAAAAATCCCGAACCG-AAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTT-GCC
* ** *
12940583 -CGAAACTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTG
514 ATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA-TGGCATTG
* * *
12940647 GCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCT-CA
578 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-TGCA
* * *
12940711 TCCTGTCTCTCTTGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGTTCGCTTGCCCGCTCGTTTC
642 TCCTGTCTCTC-TGGCGGCGTAATGCCCGCCCG--C--CCG-CCG--C-C-TGCCCGCTCGTTTC
* * *
12940776 GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCCAAGATCAGA-TCAGATCGAGGGCTGTG
697 GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGG-T-TG
* * * * * *
12940840 ACAGT-G-A-GATTGGTAGCATGTAGAGGGGGACCCGACCGATCCCCCGCTTGTGCATCCTG-TC
759 -CGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCT-
* *
12940901 CCTCTGGCCGACTGAGCACCCGCAC-GTTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
822 CCTCTGGCCG-CTGAGCACCCGCACACTT-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
12940965 CCCAG-CTAA
885 CCCAGTCTAA
* * * *
12940974 GCATACGGAGTTCATTCCCAGTTTGAGATCGAACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
12941039 CTCGAGCATGTGTTGGGGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGGAAA
66 CTCG-GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-GGAGCATCGTCGGAGA
*
12941104 ACCTGACCGACGGCAGTGGGGTTCCGACGATAGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCG-CGAT-GGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
* *
12941169 AATGGGTGCTGGTACTTGGCCCTTATATTGACCCCTATCCCTCATCAAACCTTGAGAACTCACAC
192 GATGGGTGCTGGTACTTGGCCCTTATATTGACCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
12941234 CCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGTTGCCAGTAGCCGTTAAAGTGTTTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
12941299 GGACACTTTTTTTCAAATGGTCACCAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGT
322 GGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
12941364 GCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGCAGCCAAAACTCCTTCTGAAAAAA
386 GCATGCCAAAAAAAATACAAGGATCACGTCTAC-AAGTTTG-GGCCAAAACTCCTTC-GAAAAAA
* *
12941429 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATCAAAAATAGAAAATGAGTCGTCTTG
448 TTTTAAAAAATCCCGAACCG-AAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTG
*
12941494 CCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCAT
512 CCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAATGGCAT
*
12941559 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGC
576 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
* * *
12941624 ATCCCGTCTCTCTGGTCGGCATAATGCCCGCCCGCCCGACCGCCTGCCCGCTCGTTTCATCGGTT
641 ATCCTGTCTCTCTGG-CGGCGTAATGCCCGCCCGCCCG-CCGCCTGCCCGCTCGTTTCGTCGGTT
* * *
12941689 GGCTTAGGCATACGAAGTTCATTCCCTGTCTAAGATCGGACTGGACCAAGGGTTGCGGTAGCAGG
704 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAGCAGG
* * *
12941754 ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCGCTCCTCTGGCCTGC
769 ATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCTCCTCTGGCC-GC
* *
12941819 TGAGCACCCGCACACTTATTTCGTAGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 TGAGCACCCGCACACTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12941881 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
12941946 CTCAGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTGGAGCATCGTCGGAGAA
66 CTC-GGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTGGAGCATCGTCGGAGAA
* * *
12942011 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTCAGGGGCGGTGTGCACACATGTTGTG
130 CCTGACCGACGGCATTGGGGTTCC-GCGAT--GGGGGGTC-GGGGGGGTGTGCGCACATGATGTG
*
12942076 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGAC-CCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12942141 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAG
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
12942206 GGGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTATTTTG
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
12942270 TGCATGCCAAAAAAAATACAAGGATCACGACTACCAAGTTTGGGGCAAAACCCCTTCCGAAAAAA
385 TGCATGCCAAAAAAAATACAAGGATCACGTCTA-CAAGTTTGGGCCAAAACTCCTT-CGAAAAAA
** * * *
12942335 TTTTAAAAAATCTTGAACCGTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
448 TTTTAAAAAATCCCGAACCGAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGC
*
12942400 CATGAAATTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAATAATGGCATT
513 CATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAA-AATGGCATT
*
12942465 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
577 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
* * *
12942530 TCCTGTCTCTCTGGCTGGCGT-A-G--TGCTCG--C-CCGCCT----GCTCGTTTCGTGGGTTGG
642 TCCTGTCTCTCTGGC-GGCGTAATGCCCGCCCGCCCGCCGCCTGCCCGCTCGTTTCGTCGGTTGG
* * * * *
12942584 CTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGTGTTGCGGCAGCAGGA
706 CTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAGCAGGA
* * * * * *
12942648 TCGGCAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGTT
770 TCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCTCCTCTGG-CCGCT
* * * *
12942713 TAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
834 GAGCACCCGCACACTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
12942773 GCATACAGAGTTCATTCCTAGTCTCAGATCGGATCGGATCGAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
12942822 AACAACAGGA
Statistics
Matches: 1644, Mismatches: 156, Indels: 98
0.87 0.08 0.05
Matches are distributed among these distances:
892 64 0.04
893 160 0.10
894 87 0.05
897 8 0.00
898 1 0.00
899 1 0.00
901 4 0.00
903 4 0.00
904 8 0.00
905 214 0.13
906 248 0.15
907 201 0.12
908 70 0.04
909 98 0.06
910 6 0.00
912 101 0.06
913 163 0.10
914 201 0.12
915 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTGGAGCATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGCGATGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACAAGTTTGGGCCAAAACTCCTTCGAAAAAATTTTAAAA
AATCCCGAACCGAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTC
TCTGGCGGCGTAATGCCCGCCCGCCCGCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACG
TAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCTCCTCTGGCCGCTGAGCACCCGCAC
ACTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12942777 original size:25 final size:26
Alignment explanation
Indices: 12942748--12942796 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12942738 GTTGACTTAG
12942748 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12942773 GCATACAGAGTTCATTCCTAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
12942797 CAGATCGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12942987 original size:169 final size:169
Alignment explanation
Indices: 12942664--12942989 Score: 442
Period size: 169 Copynumber: 1.9 Consensus size: 169
12942654 GCACATAGAG
* * *
12942664 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGTTTAGCGCCCGCACACTC
1 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACACTC
12942729 ATTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAG
66 ATTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAG
* * * * *
12942794 TCTCAGATCGGATCGGATCGAGGGTTGCAACAACAGGAT
131 TATAAAATCGGATCAGACCGAGGGTTGCAACAACAGGAT
* * * * *
12942833 GGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGG-CTGGCTGAGCGCTCGTACGCT
1 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC-GGCTGAGCGCCCGCACACT
* * * *
12942897 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACGGAGTTCATT-TT
65 CATTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCT
*
12942960 CAGTATAAAATTGGATCAGACCGAGGGTTG
129 -AGTATAAAATCGGATCAGACCGAGGGTTG
12942990 TGGCAGCACA
Statistics
Matches: 136, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
168 2 0.01
169 125 0.92
170 9 0.07
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (169 bp):
GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACACTC
ATTTCATGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAG
TATAAAATCGGATCAGACCGAGGGTTGCAACAACAGGAT
Found at i:12943830 original size:26 final size:26
Alignment explanation
Indices: 12943800--12943850 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12943790 TGACTTAGGG
*
12943800 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
12943826 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
12943851 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:12944733 original size:26 final size:26
Alignment explanation
Indices: 12944697--12944749 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12944687 GTTGACTTAC
*
12944697 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12944723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12944749 G
1 G
12944750 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12947361 original size:26 final size:26
Alignment explanation
Indices: 12947325--12947377 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12947315 GTTGACTTAG
*
12947325 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12947351 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12947377 G
1 G
12947378 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12947380 original size:910 final size:895
Alignment explanation
Indices: 12945078--12948097 Score: 4212
Period size: 910 Copynumber: 3.3 Consensus size: 895
12945068 AAATGGTCAC
* * * *
12945078 AAAATCTTGTAAAAAGTCCCGAACCATAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTC
1 AAAATTTTG-AAAAA-TCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTC
12945143 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
64 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
12945208 TCGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCATGAC
129 TGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC-CTATCGATCCACGGC
* * * * * * ** *
12945273 TTGCGCATCCTGTCTCTCTAGCCAGCATAGTGCCCGCCCGCCCGCCCACATGCTCGTTTCGTTGG
193 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
12945338 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAACC-AGACCAAGGGTTGTGGTAG
258 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGA-ACCGAGGGTTGCGGTAG
* * *
12945402 CAAGGATCGGCAGCACGTAGAGGGGGACCCGGTTGATCCCTGGCTTGGGCATCCCGCCCCTCTGG
321 C-AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCC-GGCTTGAGCATCCCGCCCCTCTGG
* * * * * *
12945467 CCGGCTGGGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCT
384 CCGGCTGAGTGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
12945532 AAGCATTCAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGCCAGCACATGCTG
449 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG-TCGAGGGTTGTGACAGCACATGCTG
* * * *
12945597 GGCTCGGGCATTTGCTGGTGCCACATTTTTCTTCGTCGGGCACCATCGCTGGAGCATCGCCAGAG
513 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGCCGGAGCATCGCCGGAG
*
12945662 AA-CTGACCGGCGGCATTGGGGTTTCGGACGATCGGGGGGTCAGGGGGGTGTGCGCACATGATGT
578 AACCTGA-CGGCGGCATTGGGG-TTCGG-CGATCGGGGGG-CGGGGGGGTGTGCGCACATGATGT
* * * *
12945726 GCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCGTGTCCCTCATCAAACCTCGAGAACTGA
639 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12945791 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
704 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTCTGAAA
*
12945856 TGGGGACACTTTTTTCAAATGGTCTCAAAATTCAAAATCTTGTACACTTCGAGTTTTTAGATGAA
769 TGGGGACACTTTTTTCAAATGG--TC---A--CAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
12945921 TTATTTTGTGCATGCCAAAAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTT
827 TTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTT
12945986 CCGAA
891 CCGAA
* * *
12945991 AAAATTTTAAAAAATCTCGAACCGT-AAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
1 AAAATTTTGAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
* *
12946055 CTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
12946120 GCATTGGCATGCAAAAATATGAAGATGTGGCCTAAACCCACCTACCACCGTATCGATCCACGGCT
131 GCATTGGCACGCAAAAATATGAAGATGT-GCCTAAACCCACCTACCACC-TATCGATCCACGGCT
* * *
12946185 TGCGCATCCCGTCTCTGTGGCCGGCGTAGTGCCCG-CT-CGCGCCCGCCCGCTCATTTCGTCGGT
194 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * ** * * *
12946248 TGGCTGAGGCATACAGAGTTCATTTCCAGTCTAAGATCAGACCGGGCAGAGGGTTACGGTAGTAG
259 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAG
* * * *
12946313 GATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGATCATCCCGCCCCTCTGCCCGA
324 GATCGGCAGCACGCAGAGGGGGACCCGGTCGAT-CCCGGCTTGAGCATCCCGCCCCTCTGGCCGG
* *
12946378 CTGAGTGCCTGCACGTTCGTTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGC
388 CTGAGTGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
12946443 ATACGGAGTTCATTCCCAGTTTAAGATCGAACCGGTCTGAGGGTTGTGGCAACACATGCTGGGCT
453 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGTC-GAGGGTTGTGACAGCACATGCTGGGCT
* ** * *
12946508 CGGGCATGTGCTCGTGTTGCATTTTTCTTCGTCGGGACACCATCGCCAGAGCATCGTCGGAGAAC
517 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG-CACCATCGCCGGAGCATCGCCGGAGAAC
* * *
12946573 CTGATCAGCGGCATTAGGGTTCCGGCGATCGCAGGGGCGGGGGGGTGTGCGCACATGATGTGCGA
581 CTGA-CGGCGGCATTGGGGTT-CGGCGATCG-GGGGGCGGGGGGGTGTGCGCACATGATGTGCGA
* * *
12946638 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCAAGAACTCACACA
643 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
12946703 CCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGG
708 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTCTGAAATGGG
12946768 GACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
773 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
** * *
12946832 ATGATAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTACCAAA
838 ATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAA
* * * *
12946891 AAAATTTTGAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCCT
1 AAAATTTTGAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
* **
12946956 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGTAATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
12947021 GCATTGGCATGCAGAAATATGACGATGTGCCTAAACCCACCTACCAACCTATCGATCCATGGCTT
131 GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACC-ACCTATCGATCCACGGCTT
*
12947086 GCGCATCTCGTCTCTCTGGCCGGCGTAGTGCTCGCCCACCCGCCTGCCCGCCCGCCCGCTCGTTT
195 GCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-G----CCCGCCTGCCCGCCCGCCCGCTCGTTT
* *
12947151 CGTCGATTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTCAGATCAGACCGAACCGAGGGTTGC
252 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGAACCGAGGGTTGC
* * * * * *
12947215 GGCAGCAGGATCCGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCAACCCACCCCT
316 GGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC-CGGCTTGAGCATCCCGCCCCT
* * *
12947280 CTGGCCGGTTGAGTGCCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCA
380 CTGGCCGGCTGAGTGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* *
12947345 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGACAGCACAT
445 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG-TCGAGGGTTGTGACAGCACAT
* * *
12947410 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCAC
509 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGCCGGAGCATCGC
* * *
12947475 CGGAGAACCTGACTGGCGGCATTGGGGTTCGGTGATCGGGGGGGCTGGGGGAGTATGCGCACATG
573 CGGAGAACCTGAC-GGCGGCATTGGGGTTCGGCGATC-GGGGGGC-GGGGGGGTGTGCGCACATG
12947540 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
635 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
12947605 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGACATTAAAGTGTCT
700 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTCT
* *
12947670 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTT
765 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT
* *
12947735 TTTTTGTGCAGGCCAAAAAAACTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATCTTCC
829 TTTTTGTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCC
12947800 GAA
893 GAA
* * * *
12947803 AAAATTTTGAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCG
1 AAAATTTTGAAAAATCTC-GAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCG
*
12947867 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAAT
65 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
12947932 GGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTA-CATCCCTATCGATCCACGGC
130 GGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA--CCTATCGATCCACGGC
* * * ** *
12947996 TTGCGCATCCCGTCTCTCAGGCCGACGTAGTG-CCG---GCCCGGCCGCCCGCTTATTTCATCGG
193 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGG
*
12948057 TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG
258 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
12948098 GGGCACCATC
Statistics
Matches: 1879, Mismatches: 192, Indels: 85
0.87 0.09 0.04
Matches are distributed among these distances:
899 3 0.00
900 231 0.12
901 126 0.07
902 2 0.00
903 4 0.00
904 1 0.00
905 2 0.00
906 1 0.00
907 211 0.11
908 206 0.11
909 97 0.05
910 597 0.32
911 131 0.07
912 260 0.14
913 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (895 bp):
AAAATTTTGAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGA
TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGCTG
AGTGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACCGGTCGAGGGTTGTGACAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
GGCGGCATTGGGGTTCGGCGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAA
Found at i:12948911 original size:26 final size:26
Alignment explanation
Indices: 12948875--12948927 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12948865 GTTGACTTAG
*
12948875 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12948901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12948927 G
1 G
12948928 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.