Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 80 of 190
Found at i:12949806 original size:26 final size:26
Alignment explanation
Indices: 12949776--12949828 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12949766 GTTGACTTAG
*
12949776 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12949802 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12949828 G
1 G
12949829 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12950258 original size:898 final size:898
Alignment explanation
Indices: 12948112--12952326 Score: 5693
Period size: 895 Copynumber: 4.7 Consensus size: 898
12948102 ACCATCGCTG
** * * *
12948112 GAGAACCTGACCTACGGCATTAGGGTTCCGATGATCGGGGGGGCCGGGGGGTGGTGTGCGCACAT
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG--GAGGGG-GGTGTGCGCACAT
* ***
12948177 GATGTGCGTTGGGTGCTGGTACTTGGTGTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
62 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
12948242 ACTCACACCCCCTTAAAGAGCATTTGATATTTTATAGGTTTGCTGCGAGTAGCCATTAAAGTGTC
127 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCGAGTAGCCATTAAAGTGTC
* * *
12948307 TGAAATGGGGATACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAAAT
192 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
12948372 TTTTTATGCATGCCAACAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAAAACGCCTTTC
257 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTC
* *
12948437 GAGAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGTGT
322 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
12948502 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
387 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
12948567 ATGGCATTGGCATGCAGAAATATGATGATGTGCCTAAACCCACCTACCAACCTATCGGTCCATGG
452 ATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
12948632 CTTGTGCATCTCGTCTCTCTGGTCGGCGTAGTGCCCGCCCACCCGCCTGCCCCGCCCGCCCGCTC
517 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGT------------GCCTG-CCCGCCCGCCCGCTC
* *
12948697 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTCAG-ATCGGACCGAACCGAGG
569 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGAATCGGACCGGACCGAGG
* * * *** *
12948760 GTTGTGGCAGTAGGATC-CCTAGCACGTAGAGGGGGACCCGATCGATCTTTGGCTTGCGCAACCC
633 GTTGTGGTAGCAGGATCAGC-AGCACGTAGAGGGGGA-CCGATCGATCCCCGGCTTGCGCATCCC
* * * * ** * *
12948824 ACCCTTCTGGTCGGCTGAGTGCCCGCACATTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
696 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCA
* * * *
12948889 TTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGACA
761 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* * *
12948954 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAG
826 GCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAG
*
12949019 CATCACCA
891 CATCACTA
* * * *
12949027 GAGAACCTGACCGGCGGCACTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTATGCGCACATG
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG--GAGGGGGGTGTGCGCACATG
*
12949092 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
63 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
12949157 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG-GCAATAGCCATTAAAGTGTT
128 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCG-AGTAGCCATTAAAGTGTC
*
12949221 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
192 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
12949286 TTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTCGGGACAAAACTCCTTTC
257 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTC
* * *
12949351 GAAAAAATTTTAAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAG
322 GAAAAAATTTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
12949416 TCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG-ATTTACAAGCCATAAA
386 TCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
12949480 AATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACG
451 AATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
12949545 GCTTACGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTT
516 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
*
12949610 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAAT-GGACCGGA-CGAAGGGTTGTGGTAGCA
581 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATCGGACCGGACCG-AGGGTTGTGGTAGCA
* * *
12949673 GGATCAGCAGCACATAGAGAGGGATCCGACCGATCCCCGGCTT-CTGCATCCCGCCCCTCTGGCC
645 GGATCAGCAGCACGTAGAGGGGGA-CCGATCGATCCCCGGCTTGC-GCATCCCGCCCCTCTGGCC
* * *
12949737 GACTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
708 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
12949802 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
773 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
12949867 GTTGGACATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACTG
838 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACTA
* * * *
12949928 GAGAACCTGATCGGCGGCATTGTGGTTCC-AGCGATCGGGGGGGTGGGGGGTGTGCGCAAATGAT
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGAGGGGGGTGTGCGCACATGAT
* * *
12949992 GTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGTGAACT
65 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
12950057 CACACCCCCTTAAAGAGCATTTGATATTTTATAGGTTTGCTACGAGTAGCCATTAAAGTGTCTGA
130 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGA
*
12950122 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
195 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
12950187 TTATGCATGCCAACAAAAATACAAGGAGCACATCCACCAAGTTTGGGGCCAAAACGCCTTTCGAG
260 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTCGAA
*
12950252 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGTGTCGT
325 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
12950317 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
390 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
12950382 GCATTGGCATGCAGAAATATGAAGATGTACCTGAACCCACCTACCACCCTATTGGTCCACAGCTT
455 GCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * * *
12950447 GCGCATACCGTCTCTTTGGCCGGCATAGTG--T--CTGCCAGCCCGTTCGTTTCGTCAGTTGGGT
520 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** * * * **** *
12950508 TCGACATACGGAGTTTGTTCCCAGTCCAAG-ATTGGGCCGGACCGAGGGTCACAGTGGCAGGATC
585 TAGGCATACGGAGTTCATTCCCAGTCTAAGAATCGGACCGGACCGAGGGTTGTGGTAGCAGGATC
* * *
12950572 AGCAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCTCCTCTGGCCGGCTGA
650 AGCAGCACGTAGAGGGGGAC-CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
12950637 GCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAC
714 GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC
** * ** * **
12950702 AAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGG
779 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGG
* * * * *
12950767 CATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCATCACCGGAGCATTA-TCG
844 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACT-A
* * * *
12950822 GAGAACCTGACCGACGGTAATGGGGTTCCGACGATC-GGGGGCACCGGGGGGTGTGCGCACATGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGA--GGGGGGTGTGCGCACATGA
* * *
12950886 TGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTTATCAAACCTCAAGAAC
64 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
12950951 TCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG
129 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTG
12951016 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
194 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* ** * *
12951081 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCCTTCCGA
259 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTCGA
* * * * *
12951146 AGAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTTG
324 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
12951211 TCTTGCCATGAAACTTCATGTGAAGTCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
389 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * *
12951276 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCATGGCT
454 GGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
12951341 TGCGCATCCCGTCTCCCTGGCC-AGCGTAGTGCCTACTCGCCCGTCCGCTCGTTTTGTCGGTTGG
519 TGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
12951405 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACTGAGGGTTACT-GTAGCAGG
583 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATCGGACCGGACCGAGGGTT-GTGGTAGCAGG
* * * * * * *
12951468 ATCGGTAGCACGTAAAGGGGAACCTGAACGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGC
647 ATCAGCAGCACGTAGAGGGGGACC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * **
12951533 TGAGCGCCCGTACGCTCGTTTCGTGAGTTGACTTAAACATAC-AGAGTTCATTCCCAGTCTAAGC
711 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGC
* * * * * *
12951597 ATACGGAGTTGATTCCCAGTCTAAGATCGGATCGGTCCGATGGTTGCGGCAGCACAAGCTGGACT
775 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
12951662 TGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGTGGCACCATTGCCGGGGCATCGCAA
840 TGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACTA
* * *
12951721 GAGAACCTGACCAGCGGCTTTGGGGTTCCGACGAT--------AGGGGGGTGTGCACACATGATG
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGAGGGGGGTGTGCGCACATGATG
*
12951778 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
66 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * * *
12951843 ACACCCCCTTAAAGGGCATTTGAGA-TTTACAGGTTTGCGGCCAGTAGACATTAAAGTGTCTAAA
131 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAA
* *
12951907 ATGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
196 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** *
12951972 TGTGCAGGCCAA-AAAAACTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATCTTCCGAA
261 TGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTCGAA
* * * * * *
12952036 AAAATTTTGAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGGGTCG
325 AAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
12952100 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAAT
389 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
12952165 GGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCTCCCTATCGATCCACGGCT
454 GGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** *
12952230 TGCGCATCCCGTCTCTCAGGCCGACGTAGTGCCTGCTCGCCCGCCCGCTTATTTCATCGGTTGGC
519 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* *
12952295 TTAGGCATACTGAGTTCATTCCCAATCTAAGA
584 TTAGGCATACGGAGTTCATTCCCAGTCTAAGA
12952327 TCAGGGGCAC
Statistics
Matches: 2927, Mismatches: 342, Indels: 87
0.87 0.10 0.03
Matches are distributed among these distances:
888 6 0.00
889 409 0.14
890 105 0.04
892 1 0.00
893 9 0.00
894 315 0.11
895 462 0.16
897 96 0.03
898 372 0.13
899 305 0.10
900 10 0.00
901 323 0.11
902 7 0.00
913 1 0.00
914 366 0.13
915 140 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGAGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTCGAAA
AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGAATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCA
GCAGCACGTAGAGGGGGACCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACTA
Found at i:12951606 original size:26 final size:26
Alignment explanation
Indices: 12951570--12951621 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12951560 TTGACTTAAA
12951570 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
* *
12951596 CATACGGAGTTGATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
12951622 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:12954025 original size:26 final size:26
Alignment explanation
Indices: 12953989--12954041 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12953979 GTTGACTTAG
12953989 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12954015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12954041 G
1 G
12954042 GTGGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12954509 original size:889 final size:889
Alignment explanation
Indices: 12952390--12955130 Score: 3739
Period size: 889 Copynumber: 3.1 Consensus size: 889
12952380 CGGGGGGGCC
* ***
12952390 GGGGGGTGGTGTGCGCACATGATGTGCGTTGGGTGCTGGTACTTGGTGTTTATATTGGCCCCCTA
1 GGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
12952455 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
65 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
12952520 CCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
130 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
12952585 TTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGAGCACATCCACCAAGT
195 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
12952650 TTGGGGCCAAAACGCCTTTCGAGAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
260 TTGGGGCGAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
* * *
12952715 GTGAAAAATAGAAAACGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTA
324 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
12952780 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTGAACCCACCT
389 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCT
* * * * * * * *
12952845 ACCACCCTATTGGTCCACA-GCTTGCGCATACCGTCTCTTTGGCCGGCATAGT----GTCTGCCA
454 ACCACCCTATCGATCCA-AGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * * ** * * *
12952905 GCCCGTTCGTTTCGTCAGTTGGGTTCGACATACGGAGTTTGTTCCCAGTCCAAGATTGGGCCGGA
518 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* ** * *
12952970 CCGAGGGTCACAGTGGCAGGATCAGCAGCACGCAGAGGGGGA-CTCGGTCGATCCCCGGCTTGCG
583 CCGAGGGTTACAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCT-GGTCGATCCCCGGCTTGCG
* * * *
12953034 CATCCCGCTCCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGG
647 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAG
* ** * ** * *
12953099 AGTTCATTCCCAATCTAAGCATACAAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTT
712 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGAACCAGGCAGAGGGTT
* **
12953164 GCGGCAGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCGCATTTTTGTTCGTCGGGGCACCATC
777 GCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
* * ** *
12953228 ACCGGAGCATTATCGGAGAACCTGACC-GACGG-TAATGGGGTTCCGACGAT
841 GCCGGGGCA-TCGCGGAGAACCTGACCAG-CGGCT-TTGGGGTTCCGACGAT
12953278 CGGGGGCACCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
1 ----GG----GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
12953343 CCCCCTCTCCCTCATCAAACCTCGTGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGG
58 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
12953407 TTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
123 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
12953472 TGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCT
188 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
12953537 ACCAAGTTTGGGGTGAAAACTCCTTCCGAAGAAATTTTAAAAAATCTCGAACCATAAAAAGTTTC
253 ACCAAGTTTGGGGCGAAAACTCCTT-CGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
*
12953602 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT-AAATCTTCACGTGAAGGCTTAAGGGA
317 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA-CTTCACGTGAAGGCTTAAGGGA
* * * *
12953666 CCAATGTATGAATTTACAAGCCATAAAAATGGCAATGGCATGCAGAAATATTAAGATGTGCCTAA
381 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAA
*
12953731 ACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
446 ACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * *
12953796 CCCGCCCGCCCGCTCTTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCG
511 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
12953861 GACCGGACCGAGGGTTGCAGCAACAGGATTGGTAGCACACAGAGGGGGACCTGGTTGATCCCCAG
576 GACCGGACCGAGGGTTACAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCTGGTCGATCCCCGG
* * * *
12953926 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCCGTACGCTCATTTCGTAGGTTGACTTAGGC
641 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
*
12953991 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGGTGGAACCAGGCAG
706 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGAACCAGGCAG
* * * *
12954056 AGGGTTACGGCTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCA
771 AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
* *
12954121 CCATTGCCGGGGCATCGCAAGAGAACCTGACCAGCGGCTTTGGGGTTCCGACGAT
836 CCATCGCCGGGGCATCGC-GGAGAACCTGACCAGCGGCTTTGGGGTTCCGACGAT
*
12954176 -GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTAT
1 GGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
12954239 CCCTCATCAAAACTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCCGC
66 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
12954304 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
131 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
12954369 TCGAGTTTTTTCGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGT
196 TCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
12954434 TTGGGGCGAAAATTCCTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCC
260 TTGGGGCGAAAACTCCTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
* * *
12954499 TGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATAT
325 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
12954564 GAATTTACAAGCCATAAAAATGGCATTGGCATGCTGAAATATGAAGATGTACCTAAACCCACCTA
390 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTA
* * * * * *
12954629 CCACCTTATCGATCCATGGCTTACGCATCCCGTATCTCTGGCCGGCGTAGTGCCCCCCCGCTCGC
455 CCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
** * ** * * * **
12954694 TGGCTCGTTTCGTCGGTTGGCTTAGGCATGCATAGTTCATTCCCAATCTAATATCAGACTAGACC
520 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * ** *
12954759 AAGGGTTACGGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGTGCAT
585 GAGGGTTACAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCAT
* * * * * * *
12954824 CCCACCCCTCTAGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAAAGT
650 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGT
* * * *
12954889 TCATTCCCAGTCTAAGCATACGGAGTTGATTCCCAGTCTAAGTTTGG-ATC-GGTATGAGGGTTG
715 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-ATGGAACCAGGCA-GAGGGTTG
* * * *
12954952 CGGCAGCACATGCTGGCCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGT
778 CGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGC
* * *
12955017 CGGGGCATCGCTGGAGAACCTGACTAGCAGCATTGGGGTTCCGACGAT
843 CGGGGCATCGC-GGAGAACCTGACCAGCGGCTTTGGGGTTCCGACGAT
12955065 CGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
1 ----------GGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
12955130 G
56 G
12955131 TACACTTTTT
Statistics
Matches: 1633, Mismatches: 184, Indels: 56
0.87 0.10 0.03
Matches are distributed among these distances:
888 33 0.02
889 684 0.42
890 78 0.05
892 2 0.00
893 7 0.00
894 374 0.23
895 79 0.05
896 4 0.00
897 2 0.00
898 311 0.19
899 5 0.00
900 54 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (889 bp):
GGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCGAAAACTCCTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTAC
CACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTACAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATC
CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGAACCAGGCAGAGGGTTGCGG
CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGG
GGCATCGCGGAGAACCTGACCAGCGGCTTTGGGGTTCCGACGAT
Found at i:12954915 original size:26 final size:26
Alignment explanation
Indices: 12954875--12954930 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
12954865 TGGGTTGACT
12954875 TAAGCATACAAAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAGTC
** *
12954901 TAAGCATACGGAGTTGATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAGTC
12954927 TAAG
1 TAAG
12954931 TTTGGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAGTC
Found at i:12955928 original size:802 final size:799
Alignment explanation
Indices: 12954333--12955932 Score: 2377
Period size: 802 Copynumber: 2.0 Consensus size: 799
12954323 TGAAATGGGG
* * * *
12954333 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTCGCTGAATTTTTTTGTGC
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTCTTTTCCCTGAATATTTTTGTGC
*
12954398 ATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCGAAAATTCCTTCGAAAAAATTT
66 ATGCCAACAAAAATGCAAGGATCACGTCTACCAAATTTGGGGCGAAAATTCCTTCGAAAAAATTT
* *
12954463 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAATGAGTCATCTTGCCA
131 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAAAAAATGAGTCATCTTGCCA
12954528 TGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGG
196 TGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
12954593 CATGCTGAAATATGAAGATGTACCTAAACCCACCTACCACCTTATCGATCCATGGCTTACGCATC
261 CATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATC
* * * ** *
12954658 CCGTATCTCTGGCCGGCGTAGTGCCCCCCCGCTCGCTGGCTCGTTTCGTCGGTTGGCTTAGGCAT
326 CCGTATCTCTGGCCGACGTAGTGCCCCCCCGCCCACCCGCTCGTTTCGCCGGTTGGCTTAGGCAT
* * * *
12954723 GCATAGTTCATTCCCAATCTAATATCAGACTAGACCAAGGGTTACGGCAGCAGGATCGGTAGCAC
391 ACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCGGTAGCAC
* * **
12954788 GCAGAAGGGGACCCGACCGATCCCCGGCTTGTGCATCCCACCCCTCTAGCCGGTTGAGCACCCGC
456 ACAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGACTGAGCACCCGC
* * *
12954853 ACGCTCGTTTCGTGGGTTGACTTAAGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTGA
521 ACGCTCGTTTCGTGGGTTGACTTAAGCATACAAAGTTCATTCCCAGTCTAAGCATACGAAATTCA
* * * *
12954918 TTCCCAGTCTAAGTTTGGATCGGTATGAGGGTTGCGGCAGCACATGCTGGCCTCGGGCATGTGCT
586 TTCCCAGTCTAAGATCGGATCGGTACGAGGGTTACGGCAGCACATGCTGGCCTCGGGCATGTGCT
* * * * *
12954983 GGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGGGCATCGCTGGAGAACCTGACTAGCAGC
651 GGTGCCGCATTTTTCTTCACCAGGGCACCATCATCGGGGCATCGCTAGAGAACCTGACGAGCAGC
* ** * *
12955048 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
716 ATTCGGGTTCCGACGATCGGGGGGGCCCAGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTAG
12955113 TACTTGGCCCTTATATTGT
781 TACTTGGCCCTTATATTGT
12955132 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAG-CTTTTCCCTGAATATTTTTGTGC
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTCTTTTCCCTGAATATTTTTGTGC
* *
12955196 GTGCCAACAAAAATGCAAGGATCACGTCTACCAAATTTGGGGTGAAAATTCCTTCCGAAAAAATT
66 ATGCCAACAAAAATGCAAGGATCACGTCTACCAAATTTGGGGCGAAAATTCCTT-CGAAAAAATT
* *
12955261 TTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCAC-GAAAAATAAAAAATGAGTCATCTTGC
130 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC-CTGAAAAATAAAAAATGAGTCATCTTGC
12955325 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATT
194 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATT
* * * *
12955390 GGCATGCAGAAATGTGATGATGTGCCTAAACCCACCTA-CACCCTATCGATCCACGACTTGCGCA
259 GGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCA
* *
12955454 TCCCGTCTCTCTGGCCGACGTAGTGCCCAGCTGCTCGCCCACCCGCTCGTTTCGCCGGTTGGCTT
324 TCCCGTATCTCTGGCCGACGTAGTGCCC--C--CCCGCCCACCCGCTCGTTTCGCCGGTTGGCTT
* * * * * *
12955519 AGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATTGG
385 AGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCGG
* ** ** **** *
12955584 TAGCACACAGAGGGGGACCCGGTCGATCCTTGGCTTGCGCATCTTGTCCCTCTGGCCGACTGAGC
450 TAGCACACAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGACTGAGC
* * * *
12955649 GCCCGCACGCTCGTTTCGTTGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGCATACGA
515 ACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAAAGTTCATTCCCAGTCTAAGCATACGA
* * *
12955714 AATTCATTCCCAGTCTAAGATCGGATCGG-ACCGAGGGTTACGGCAGGACATGCTGGGCTTGGGC
580 AATTCATTCCCAGTCTAAGATCGGATCGGTA-CGAGGGTTACGGCAGCACATGCTGGCCTCGGGC
12955778 ATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCATCGGGGCATCG-TCAGAGAACCTGA
644 ATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCATCGGGGCATCGCT-AGAGAACCTGA
*
12955842 CCGA-CGGCATTCGGGTTCCGACGATC-GGGGGGCCCAGGGGGGTGTGCGCACAAGATGTGCGAT
708 -CGAGCAGCATTCGGGTTCCGACGATCGGGGGGGCCCAGGGGGGTGTGCGCACAAGATGTGCGAT
12955905 GGGTGCTAGTACTTGGCCCCTTATATTG
772 GGGTGCTAGTACTTGG-CCCTTATATTG
12955933 GCCCCCTATC
Statistics
Matches: 715, Mismatches: 76, Indels: 17
0.88 0.09 0.02
Matches are distributed among these distances:
798 119 0.17
799 207 0.29
800 2 0.00
801 51 0.07
802 334 0.47
803 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (799 bp):
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTCTTTTCCCTGAATATTTTTGTGC
ATGCCAACAAAAATGCAAGGATCACGTCTACCAAATTTGGGGCGAAAATTCCTTCGAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAAAAAATGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATC
CCGTATCTCTGGCCGACGTAGTGCCCCCCCGCCCACCCGCTCGTTTCGCCGGTTGGCTTAGGCAT
ACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCGGTAGCAC
ACAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGACTGAGCACCCGC
ACGCTCGTTTCGTGGGTTGACTTAAGCATACAAAGTTCATTCCCAGTCTAAGCATACGAAATTCA
TTCCCAGTCTAAGATCGGATCGGTACGAGGGTTACGGCAGCACATGCTGGCCTCGGGCATGTGCT
GGTGCCGCATTTTTCTTCACCAGGGCACCATCATCGGGGCATCGCTAGAGAACCTGACGAGCAGC
ATTCGGGTTCCGACGATCGGGGGGGCCCAGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTAG
TACTTGGCCCTTATATTGT
Found at i:12957062 original size:901 final size:902
Alignment explanation
Indices: 12955132--12957380 Score: 3133
Period size: 901 Copynumber: 2.5 Consensus size: 902
12955122 CTTATATTGT
* * ** *
12955132 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGCTTTTCCCTGAATATTTTTGTGCG
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCA
* * *
12955197 TGCCAACAAAAATGCAAGGATCACGTCTACCAAATTTGGGGTGAAAATTCCTTCCGAAAAAATTT
65 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGG-GAAAACTCCTTCCGAAAAAATTT
* ** * *
12955262 TAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCACGAAAAATAAAAAATGAGTCATCTTGCCA
128 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
*
12955327 TGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGG
193 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
12955392 CATGCAGAAATGTGATGATGTGCCTAAACCCACCTA-CACCCTATCGATCCACGACTTGCGCATC
258 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
12955456 CCGTCTCTCTGGCCGACGTAGTGCCCAG--CTGCTCGCCCACCCGCTCGTTTCGCCGGTTGGCTT
323 CCGTCTCTTTGGCCGACGTAGTGCCC-GCCCTGCT-GCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
12955519 AGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATTGG
386 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGA
* * * * ***
12955584 TAGCACACAGAGGGGGACCCGGTCGATCCTTGGCTTGCGCATCTTGTCCCTCTGGCCGACTGAGC
451 CAGCACACAGAAGGGGACCCGGTCGATCCTCGGCTTACGCATCTCCACCCTCTGGCCGACTGAGC
* * *
12955649 GCCCGCACGCTCGTTTCGTTGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGCATACGA
516 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGA
* * * * *
12955714 AATTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGGACATGCTGGGCTTGGGCA
581 AATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGCCTCGGGCA
* * * *
12955779 TGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCATCGGGGCATCGTCAGAGAACCTGACC
646 TGTGCTGGTGCCGCATTTTTCTTCACCAAGGCACCATCACCAGAGCATCGTCAGAGAACCTGACC
* *
12955844 GACGGCATTCGGGTTCCGACGATCGGGGGGCCCAGGGGGGTGTGCGCACAAGATGTGCGATGGGT
711 GACGGCATTAGGGTTCCGACGATCGGGGGGCCCAGGGGGGTGGGCGCACAAGATGTGCGATGGGT
*
12955909 GCTAGTACTTGGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCCT
776 GCTAGTACTTGGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCACAAGAACTCACACCCCCT
*
12955974 TAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGG
841 TAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATCGGG
* * *
12956036 ACACTTTTTTAAAATGGTCACGAAATCTTGTACACCTT-GAGTTTTTTGCTGAATTTTTTTGTGC
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAA-TTTTTTGTGC
* * **
12956100 ATGCCAACAAAAATAC-AGCAATCATGTCTACCAAGTTTGGGGTTAACTCCTTCCG-AAAAATTT
64 ATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGAAAACTCCTTCCGAAAAAATTT
* * * * *
12956163 GACAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
128 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
12956228 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
193 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
12956293 CGCACAGAAATATGAAGATATGCCTAAATCCACCTACCACCCTATCGATGCACGGCTTGCGCATC
258 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
12956358 TCATCTCTTTGGCCGACGTAGTGCCCGCCCTTCTGCTCGCCCGCTCGTTTCGTCGATTGGCTTAG
323 CCGTCTCTTTGGCCGACGTAGTGCCCGCCCTGCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
12956423 GCATACGGAGTTCATTCCCAGTCTAAGATCACACCGGACCGAGGGTTGCAGTAGTA-GATCGACA
388 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACA
*** * *
12956487 GCATGTAGAAGGGGACCCGGTCGATCCTCGGCTTACGCATC-CCACCTCTCTGGCTGGCTGAGCA
453 GCACACAGAAGGGGACCCGGTCGATCCTCGGCTTACGCATCTCCACC-CTCTGGCCGACTGAGCA
* * * *
12956551 CCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAA
517 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAA
* * * *
12956616 GTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTT-GGGCAGCATATGCTGGCCTCGGGCAT
582 ATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGCCTCGGGCAT
* * ** * *
12956680 GTGTTGGTGCCGTATTTTTCTTCGTCAAGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCG
647 GTGCTGGTGCCGCATTTTTCTTCACCAAGGCACCATCACCAGAGCATCGTCAGAGAACCTGACCG
* * *
12956745 ACGGCATTAGGGTTCTGGCGATCAGGGGGG-CCA-GGGGGTGGGCGCACATGATGTGCGATGGGT
712 ACGGCATTAGGGTTCCGACGATC-GGGGGGCCCAGGGGGGTGGGCGCACAAGATGTGCGATGGGT
* * * *
12956808 GCTGGTACTTGGCCCC-TATATTGTCCCCCTATCGCTCATCAAACCTCAAGAACTCACACCCCCT
776 GCTAGTACTTGGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCACAAGAACTCACACCCCCT
* * *
12956872 TAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGG
841 TAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATCGGG
* *
12956934 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTGTGTTGTGCA
1 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCA
* *
12956999 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCAAAAACTCCTTCCGAAAAAATTT
65 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGG-GAAAACTCCTTCCGAAAAAATTT
12957064 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
128 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
* *
12957129 TCAAACTTCACGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATGGCATTGG
193 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
12957194 CACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACAGCTTGCG-ATC
258 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** ** * *
12957258 CCGTCTCTCTGTCGGCATA-GTACCCGCCCGCCC-GCCGCCCGCCCGCTCATTTCGTCGGTTGGC
323 CCGTCTCT-T-T-GGCCGACGTA-GTGCCCGCCCTGCTGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
12957321 TTAGGCGTACGGAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCA
384 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCA
12957381 CATGCTGGGC
Statistics
Matches: 1181, Mismatches: 146, Indels: 38
0.87 0.11 0.03
Matches are distributed among these distances:
897 5 0.00
898 186 0.16
899 48 0.04
900 121 0.10
901 496 0.42
902 218 0.18
903 21 0.02
904 83 0.07
905 3 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (902 bp):
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAAAACTCCTTCCGAAAAAATTTTAA
AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTTTGGCCGACGTAGTGCCCGCCCTGCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACAGCA
CACAGAAGGGGACCCGGTCGATCCTCGGCTTACGCATCTCCACCCTCTGGCCGACTGAGCACCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAATTC
ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGCCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCACCAAGGCACCATCACCAGAGCATCGTCAGAGAACCTGACCGACGG
CATTAGGGTTCCGACGATCGGGGGGCCCAGGGGGGTGGGCGCACAAGATGTGCGATGGGTGCTAG
TACTTGGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCACAAGAACTCACACCCCCTTAAAG
AGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATCGGG
Found at i:12959672 original size:26 final size:26
Alignment explanation
Indices: 12959636--12959688 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12959626 GTTGACCTAG
*
12959636 GCATACGGAGTTCATTCTCC-GTCTAA
1 GCATAAGGAGTTCATTC-CCAGTCTAA
12959662 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12959688 G
1 G
12959689 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:12960575 original size:26 final size:26
Alignment explanation
Indices: 12960539--12960591 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12960529 GTTGACTTAG
*
12960539 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12960565 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12960591 G
1 G
12960592 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12961019 original size:903 final size:900
Alignment explanation
Indices: 12958250--12964084 Score: 7419
Period size: 903 Copynumber: 6.5 Consensus size: 900
12958240 TTTACAGGTT
* * *
12958250 TGCATGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTTCTTTCGAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
* ** *
12958315 ATTTTAAAAATTCCTGAACCGC-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGTGTCGTCTT
66 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
12958379 GCCATGAAACTTCACGTGAAGGCTTAAGGGATCGTTGTACGAATTTACAAGCCATAAAAATGGCA
131 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
12958444 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCG
196 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
12958509 CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCG---CCCGCTCATTTCGTCAGTTGGAT
261 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCACCCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
12958571 TAGGCATACGGAGTTCATTCCTAATCTAAGATCAGATCGAATCGAGGGTTGCGACAGTAGGATCG
326 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACT-GAGGGTTGCGGCAGCAGGATCG
* * * * ** ** * *
12958636 GTAACACGTAGAGGGGGACCCAATCAATCCTTGACTTGATCATCCTGCCCCTCTGGCCGGCTAAG
390 GTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTAAG
* * * *
12958701 TC-CCCGCACGCTTGTTTTGTGGGTTGA-TTAGGCATACGGAGTTCATTCCTAGTCCAAGCATAC
455 -CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * *
12958764 GGAGTTCATTCCTAGTCTAAGATCAGGACCGGACCGAGCGTTGCGACAGTACATGCTAGGCTCGG
519 GGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA
* * * * *
12958829 GCATGTGTTGGTGTCGCATTTTT-TTCGCCTGGGCACCATCGCCGCAGCATCGCCGGAGAACCTG
583 GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
*
12958893 ACC-AGCGGCATTGGGGTTTCGACGATCGGAGGGGCC-GGGGGTGTGCGCACATGATGTGCGATG
648 ACCGA-CGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* *
12958956 GGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCC
711 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
12959021 TTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGA
776 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
12959086 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
841 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * **
12959146 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCC-AAACTTCTGCCAAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
* * *
12959210 ATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTTGAAAAATCATGAAAAATAGAAAACTAGTCGT
66 ATTTTAAAAAATCCT-GAACCGCAAAAAG-TTTTG-AAAATCGTGAAAAATAGAAAACGAGTCGT
* *
12959274 CCTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
128 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
12959339 GCATTGGTGCACAGAAATATGAAGATGTGCCTAAACCCACGTACCGCCCTATCGATCCACGGCTT
193 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
12959404 GTGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGTCCGA-CCGCTCGTTTCTGTCGG
258 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CC-ACCCGCTCGTTTC-GTCGG
* * * * * *
12959468 TCGGCGTAGGCATACAGAGTTCATTCCCAGTGTAAGATCGGACCGAACTGAGGGTTGCAGTAGCA
320 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACTGAGGGTTGCGGCAGCA
* ** * * * * *
12959533 GGATTGACAGCACACAGAAGGGGACCTGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCG
384 GGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG
* * ** * *
12959598 GCTGAGTACCCGCAGGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCTCC-GTCTAA
449 ACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CCAGTCTAA
* * ** * *
12959662 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGG
513 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
12959727 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTATCAGAGA
578 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * * *
12959792 ACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGCTGGCTGGGGGGTGTGCGCACATGATGGGC
643 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGC
* *
12959857 GATGGGTGCTGGCACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACA
707 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
12959922 CCCCCTTGAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
772 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
12959987 GGAACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
837 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
12960051 TGCATGCCAATAAAAATACAAGGATCACGTCTATCAAGTTTAGGGCCAAATCTCCTTCCAAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
*
12960116 TTTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
66 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
12960181 GCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
131 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
12960246 TTGTCATGCAAAAATATGAAGATGTGACTAAACCCACCTACCACCCTATTGATCCACGGCTTGCG
196 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
12960311 CATCCCGTCTCTCTAGCCGGCGTAGTGCCCACCCGCCCGTCCACCCGCTCGTTTCGTCGGTTGGC
261 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCACCCGCTCGTTTCGTCGGTTGGC
*
12960376 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATC
325 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTGAGGGTTGCGGCAGCAGGATC
* * * * *
12960441 GGTAGGACGCAGAGGGGGACCCGACCGTTCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTAA
389 GGTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTAA
*
12960506 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
454 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * *
12960571 AGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCATATGCTGGGCTTGAG
519 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAG
* * * *
12960636 CACGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTCA
584 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
* * **
12960701 CCGACGGCGTTGGGGTTCCGACAATCGGGGGGCCGGGGGGTGTATGCACATGATGTGCGATGGGT
649 CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
12960766 GCTGATACTTGGCCCGTATATTGGCTCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
714 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
12960831 AAAGAGCATTTTAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
779 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
12960896 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
844 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12960953 TGCATACCAATAAAAATACAGGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTTCAAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
* * * *
12961018 ATTTTAAAAAATCCAGAACCGTAAAAAGTTTTAAAAATCGTAAAAAATAGAAAACGAGTCGTCTT
66 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * *
12961083 GCCTTGAAACTTCACATGAAGGCAGTAA-GGAGCATTGTATGAATTTAAAAGCCATAAAAATGGG
131 GCCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GG
* * * *
12961147 CCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCA-CCTAACGATCCACGGCGT
194 -CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * ***
12961211 GCGAAATGCCCGTCTCTTCTGGCCGGCGTAGTGCCCGTCCG--CGCCTCCCGCTCGGTGGGGTCG
258 GCG-CAT-CCCGTCTC-TCTGGCCGACGTAGTGCCCGCCCGCCCGCCACCCGCTC-GTTTCGTCG
* * *
12961274 GTTGGCTCCCTAGGCATACGGAGTTCATTCCCAGTCT-AGAT-GAAACAGACT-AGGGTTGTGGC
319 GTTGGCT---TAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-GACCGACTGAGGGTTGCGGC
* * * * * * * * *
12961336 AGCAGGATAGGTAGCATGCAGAAGGGGGAACCGACCGATTGCCTGGC-TGCGCATCCCACCCCTT
380 AGCAGGATCGGTAGCACGCAG-AGGGGGACCCGATCGA-TCCCCGACTTGCGCATCCCGCCCCTC
* * * *
12961400 TGGCCGGA-TGAGCACCCGAACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGAATTTT
443 TGGCC-GACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC--A----
12961464 TTTCCCAGTCTAAGCATACGGAGTTCATTCCCCCATAGTCTAAGATCAGACCGGACCGACGGGTT
501 -TTCCCAGTCTAAGCATACGGAGTTCATT--CCC--AGTCTAAGATCAGACCGGACCGA-GGGTT
* * * *
12961529 GCCGCCAGCAACATG-TGGGCTCGGGCATGTG-TGGTGTCGCATTTTTCTTCGTCGGGGGCACCA
560 G-CGACAGC-ACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG-CCGGGGCACCA
* * ** * * * *
12961592 TCGTCAGAGCATCGTCGGAGAACCTGACCGACGGCGTTAGGGTTTCGACGACCGGGGGGCCGGGG
622 TCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC----
*
12961657 GGTGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
683 GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
12961722 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGTC
747 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
12961787 AGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
812 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
12961852 CGAGTTTTTAGCTGAATTTTTTTG
877 CGAGTTTTTAGCTGAATTTTTTTG
* * * * *
12961876 TGCATGCCAAAAAAAATACAAGGATCACATCTACAAAGTTTTGGGCCAAAACTCC-TTCTGAACA
1 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAA
* * *
12961940 AATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTGGTCT
65 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
12962005 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCGTTGGATGAATTTACAAGCCATAAAAATGGC
130 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * *
12962070 ATTGGCTTGTAGAAATATGAAGATGTGCCTAAAACTACCTACCACCCTATCGATCCACAGCTTGC
195 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
12962135 GCATCCAGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCCCG---CCCGCTCGTTTCGTCGGTTGGC
260 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCACCCGCTCGTTTCGTCGGTTGGC
* * * * * * *
12962197 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGAGTTACGGCAACAGGATT
325 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACTGAGGGTTGCGGCAGCAGGATC
* * * * * * * *
12962262 GGCATCACGTAAAGGGGGACCC-AGTCGAT-CCCGGCTTGCACATCCTGCCCCTCTGGCCGACTG
389 GGTAGCACGCAGAGGGGGACCCGA-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTA
* * * *
12962325 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTAATTCCTAGTCTAAGCATA
453 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * ** * * *
12962390 CGAAGTTCATTCCCAGTCTAAGCTCAGAATGGACCAAGGGTTGCGACAGCAGATGCTGGGCTTGA
518 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA
* * * ** * *
12962455 ACATGTGCTGGAGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCGGATAACCTG
583 GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* * **
12962520 ACCAACGGCATTGGGGTTTCGGTGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGG
648 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGG
* * *
12962585 GTGCTGATACTAGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
712 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
12962650 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
777 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
12962715 ACTTTTTTCAAATGGTCACAATATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTG
842 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
12962774 TGCATGCCAACAAAAATACGAGGATCACATCTACCAAGATTGGGTCCAAAACTCCTTCTGAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT-TCAAAAA
* * *
12962839 AATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGTGTCGTT
65 AATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
12962903 TTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-ATAAAATG
129 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATG
*
12962967 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
193 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
12963032 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCG-CA--CGTTCATTTCGTCGGTTG
258 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCACCCGCTCGTTTCGTCGGTTG
* * * *
12963094 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAAGA
323 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTGAGGGTTGCGGCAGCAGGA
* * * * * * * * ** * * * *
12963159 TCGGCAACATGCAAAGAGGGACCCAATCGATTCTCGACTTATGCATCTCGCCCATCTGACCGGCT
387 TCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACT
* * *
12963224 GAA-CGCCCGAACGCTCGATTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
452 -AAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
12963288 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTC
516 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
* * * *
12963353 -AGGCATGTGCTGGTGCCG--TATTTC-T----------CC-TCGCCTGAGCATCGCCGAAGAAC
581 GA-GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAAC
* * * * *
12963403 CTGACCGATGGCACTGGGGTTCCGACAATAGGGGGGCCGGGGAGGTGTGCGCAAATGATGTGCGA
645 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGA
* * * *
12963468 TGAGTTCTGGTATTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACC
709 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
12963533 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTCGCCATTAAAGTGTCTGAAATGGG
774 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * *
12963598 GACACTTTTTTCAAATGATCAGAAAAATCTTGTACACATCGAGTTTTTAGCTGAACTTTTTTA
839 GACACTTTTTTCAAATGGTCA-CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * ** **
12963661 TGCATGCCAATAAAAATACATGGATCACAGCTACCAAGTTTGGAGCCAAAACTAATTTTGAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
* * *
12963726 ATTTTAAAAAATCCCGAACCTC-AAAA----TAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
66 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
12963786 GCCATGAAACTTCACATGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
131 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
12963850 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
196 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * **
12963915 CATCCCGTCTCTCTGGCCGACGCAGTGCTGGCTCGCCCGCCCACCCGCTCGTTTCGTCAATTGGC
261 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCACCCGCTCGTTTCGTCGGTTGGC
* * ** * *
12963980 TTAGGCATACGGAGTTCATTCCCAATCTAAAATCGGATTGGACTGAGGGTTACGGCAGTAGGATC
325 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACTGAGGGTTGCGGCAGCAGGATC
* * * *
12964045 AGTAGCACGTAGAGGGGGACCCGACCGATCCTCGACTTGC
389 GGTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGC
12964085 TCATACCACC
Statistics
Matches: 4306, Mismatches: 542, Indels: 194
0.85 0.11 0.04
Matches are distributed among these distances:
880 134 0.03
881 57 0.01
882 2 0.00
884 98 0.02
885 8 0.00
886 232 0.05
887 86 0.02
894 2 0.00
895 31 0.01
896 49 0.01
897 4 0.00
898 443 0.10
899 314 0.07
900 148 0.03
901 5 0.00
902 465 0.11
903 551 0.13
904 414 0.10
905 347 0.08
906 75 0.02
907 29 0.01
908 26 0.01
912 27 0.01
913 1 0.00
914 36 0.01
915 70 0.02
916 35 0.01
917 60 0.01
918 88 0.02
919 26 0.01
920 7 0.00
921 42 0.01
922 28 0.01
923 366 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCACCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACTGAGGGTTGCGGCAGCAGGATCGG
TAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTAAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCA
TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
Found at i:12962401 original size:26 final size:26
Alignment explanation
Indices: 12962361--12962412 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12962351 TGACTTAGGT
* *
12962361 ATACGGAGTTAATTCCTAGTCTAAGC
1 ATACGAAGTTAATTCCCAGTCTAAGC
*
12962387 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTAATTCCCAGTCTAAGC
12962413 TCAGAATGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTAATTCCCAGTCTAAGC
Found at i:12963295 original size:26 final size:26
Alignment explanation
Indices: 12963259--12963311 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12963249 GTTGACTTAG
12963259 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12963285 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12963311 G
1 G
12963312 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12966055 original size:26 final size:26
Alignment explanation
Indices: 12966019--12966071 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12966009 CCGGTCTGAT
12966019 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12966045 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12966071 C
1 C
12966072 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:12966942 original size:26 final size:26
Alignment explanation
Indices: 12966906--12966958 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12966896 CCTGTCTGAT
*
12966906 CTTAGACTGGGAATTAACTTTGTATG
1 CTTAGACTGGGAATGAACTTTGTATG
12966932 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTTGTATG
12966958 C
1 C
12966959 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTGTATG
Found at i:12967412 original size:891 final size:886
Alignment explanation
Indices: 12965350--12969106 Score: 4714
Period size: 891 Copynumber: 4.2 Consensus size: 886
12965340 CGTGACGCAT
* *
12965350 CCGA-CAGAGAGACGTGGATCCGTCAAGCCGCTGGATCGATGGGAGTGGTTAGGTTGTGGTATTT
1 CCGACCAGAGAGACG-GGATGCGT-AAGCCG-TGGATCGATAGG-GTGG-TAGG-TG-GG--TTT
* ** * * *
12965414 AGGCAGCAATCTTCATATTTTTGTGTCGCAAACTGCCAATTTTATGGATATGTAAATTCCATACA
57 AGGCA-C-ATCTTCATATTTCTGCAT-GCCAA-TGCCATTTTTATGGCT-TGTAAA-T-CATACA
* * *
12965479 ATGGGTCCCTATGTAAAGGCCTTCACGCTGAAGTTTGATGGCTAA-ATCGACTCATTTGTGCTA-
115 AT-GGTCCC--T-T-AA-GCCTTCACG-TGAAGTTTCAT-GCCAAGA-CGACTCGTTT-T-CTAT
** * *
12965542 TTTTCCGGATTTTTGAGAGACTGGGTTTTAGCGGTTCGAGGAATTTTCTCAAATTTTTTATC-GA
169 TTTTCATGATTTTTGA-A-ACT---TTTT-GCGGTTC-AGG-ATTTT-TTAAAATTTTT-TCGGA
*
12965606 AGGGATTTTTGG-CCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGAC-TGGCATGCTA-AAA
224 A-GGAGTTTTGGTCCC-AAACTTGGTAGACGTGATCCTTGTATTTTT--CTTGGCATGC-ACAAA
*
12965668 AGAGATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
284 A-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
12965733 TCAGACACTTTAATGGCTACTCGCAGCAAACCTATAAAATATCAAATGCTCTTTAAGGGGGTGTG
348 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
12965798 AGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
413 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
12965863 ATCATTTGCGCACA-----C-CCCCCCGATCACCGGAACCCCAATGCCACCGATCAGGTTCTCCA
478 ATCATGTGCGCACACCCCCCGCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGG-TATCC-
* * * * *
12965922 GTGATGCTCCAGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGTCTGAGCCTAGC
541 ----T-C-CGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
12965987 ATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
599 ATGTGCTGCCGCAACCCTCGGT-CTGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
* ** * *
12966052 TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATTAGCGTACGGGCGCTCAGTCGGCCAA
663 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAG
* * * * * *
12966117 AGGGGCGGGATGCGGAAGCCGGGGATCAGTCGGGTCCCCCTCTGTGTGCTGCTGATCCTGCTGCC
728 AGGGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCC
* *
12966182 ACAACCCTCCATCCGGTCCATTCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
793 ACAACCCTCCATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
*
12966247 AACGAGCGGGCGGGCGGGCGGGCACTACG
858 AACAAGCGGGCGGGCGGGCGGGCACTACG
* *
12966276 CCGACTAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATC
1 CCGACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
12966341 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATCATACAATGGTCCCTTAAGCCT
66 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATCATACAATGGTCCCTTAAGCCT
* *
12966406 TCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTGCG
131 TCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
*
12966471 GTTCAGGATTTTTTCAAAATTTTTTCGGAAGGAGTTTT-GTCCCGAAACTTGGTGGACGTGATCC
196 GTTCAGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGTCCC-AAACTTGGTAGACGTGATCC
*
12966535 TTGTATTTTTCTTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
259 TTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
12966600 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTA-TTGCGAGCAAACCTGTAAAAT
324 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAAT
12966664 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
388 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
12966729 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCTATCGCCGGAAC
453 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCGATCGCCGGAAC
* * *
12966794 CCCAATTCCGCCGGTCAGGT-T-CTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGC
517 CCCAATGCCGCCGATCAGGTATCCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * *
12966857 ACATGCTCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATTA
582 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGTCTGATCTTAGACTGGGAATGA
* ** *
12966922 ACTTTGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
646 ACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACG
* * *
12966987 GGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGGCGGGTCCCCCTCTGCATG
711 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTG
* ** * * *
12967052 CTGCCGATCCTATTGCTGCAACCCTCGATCCGGTCTAATCTTAGACTGGAAATGAACTCCGTATG
776 CTGCCGATCCTACTGCCACAACCCTCCATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * *
12967117 CCTAAGCCAACTGACGAAACGAGTGGGCGGGCGGGCGGGCGGGCACTACA
841 CCTAAGCCAACCGACGAAAC-A---AGCGGGCGGGCGGGCGGGCACTACG
* * *
12967167 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATC
1 CCGACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * ** * ** * *
12967232 CTCATATTTTTGTGTGCCGATGCCATTTTTATATCTTGTAAATTCATACAGTGGTCCCTTAAACC
66 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA-TCATACAATGGTCCCTTAAGCC
* * ** *
12967297 TTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAC
130 TTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
* * * *** * *
12967362 GGTTCAAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGTATTAAACTTGGCAGACATGATCCT
195 GGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCT
* *
12967427 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGAC
260 TGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
12967492 CATTTGAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGCCAACCTGTAAAATCT
325 CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
12967557 TAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
390 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
12967622 ACAAGAACCAGCACCCATCGCACATCACT-TGCACACAACCCCCGCCCCCCGATTGCCGGAACCC
455 CCAAGTACCAGCACCCATCGCACATCA-TGTGCGCACACCCCCCGCCCCCCGATCGCCGGAACCC
* * *
12967686 CAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGCGG
519 CAATGCCGCC-G--A-----TCAGGT-ATCCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
12967751 CACCAGCACATGCCCGAG-CCAGCATGTGCTGCCGCAA-CC-C--TC-G---G-TC-----C---
575 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGTCTGATCTTAGACTGG
*
12967798 --A-G---TTCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAG
640 GAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
*
12967855 CGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACCTGGTCCCCCT
705 CGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGA-CGGGTCCCCCT
*
12967919 CTGCGTGCTGCCGATCCTACTGCCACAACCCTCCATCCGGTCCATTCTTAGACTGGGAATGAACT
769 CTGCGTGCTGCCGATCCTACTGCCACAACCCTCCATCCGGTCCAATCTTAGACTGGGAATGAACT
* ** ** * *
12967984 CTG-ATGCCTAAGCCAACCGACGAAATGAGCCAGCGGACGGGTGGGCACTACG
834 CCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACG
* *
12968036 CCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATC
1 CCGACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
12968101 TTCATATTTCTGCATGCCAAGGCCATTTTTATGGCTTGTAAATCATACAATGGTCCTTTAAGCCT
66 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATCATACAATGGTCCCTTAAGCCT
12968166 TCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
131 TCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
* * *
12968231 GTTCGGGATTTTTTAAAATTTTTGT-GGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
196 GTTCAGGATTTTTTAAAATTTTT-TCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCT
*
12968295 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
260 TGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
12968360 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCT
325 CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * * *
12968425 CAAATGCTCTTTAAGGGGCTATGAGTTGTCGAGGTTTCATGAGGGATAGGGGGCCAATATATGGG
390 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * * *
12968490 CCAAGTACCAGCATCCATCGTACATCATGTGCGCACACCCCCCGGCCACTCAATCGTCGGAACCC
455 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCGATCGCCGGAACCC
* ** *
12968555 CAATGCCGCCGATCAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGGGGAAGAAAAATGCAG
519 CAATGCCGCCGATCAGG-TAT-C--C--T-C--CGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * *
12968620 CACCAACACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
575 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GTCTGATCTTAGACTG
* *
12968685 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
639 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *** * * *
12968750 ACGTGCGGGTGCCCAGCCGAATAGAGGGGTGAGATGCGCAAGCGGGGGATC-GACTGGGTCCCCC
704 GCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGAC-GGGTCCCCC
* * * ** * *
12968814 TCTGTGTGCTGCCGATCCTGCTGTCGTAACCCT-CAGTCTGGTCGAATCTTAGACTGGGAATGAA
768 TCTGCGTGCTGCCGATCCTACTGCCACAACCCTCCA-TCCGGTCCAATCTTAGACTGGGAATGAA
* * * *
12968878 CTTCGTATGCCTAAGCCAACTGACGAAGCAAGCGGGTGGGCGGGCGGGCACTACG
832 CTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACG
* *
12968933 TCGACCAGAGAGACGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CCGACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
**
12968998 TTCATATTTCTGCATGCCAAAACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
66 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA-TCATACAATGGTCCCTTAAGCC
*
12969063 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
130 TTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTC
12969107 GAAAGCAGTT
Statistics
Matches: 2495, Mismatches: 257, Indels: 186
0.85 0.09 0.06
Matches are distributed among these distances:
861 5 0.00
862 1 0.00
864 1 0.00
866 2 0.00
867 2 0.00
868 350 0.14
869 186 0.07
870 19 0.01
871 2 0.00
872 1 0.00
873 22 0.01
874 165 0.07
875 2 0.00
876 4 0.00
879 1 0.00
880 3 0.00
885 2 0.00
887 281 0.11
888 2 0.00
889 1 0.00
890 35 0.01
891 575 0.23
892 111 0.04
893 42 0.02
894 20 0.01
895 10 0.00
896 163 0.07
897 146 0.06
898 102 0.04
899 2 0.00
900 20 0.01
901 54 0.02
902 15 0.01
903 13 0.01
904 11 0.00
905 9 0.00
906 2 0.00
907 1 0.00
908 1 0.00
910 6 0.00
911 8 0.00
912 1 0.00
913 6 0.00
914 14 0.01
915 4 0.00
916 15 0.01
917 1 0.00
918 7 0.00
920 2 0.00
921 2 0.00
922 4 0.00
923 4 0.00
924 11 0.00
925 6 0.00
926 11 0.00
927 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
CCGACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
GTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCGATCGCCGGAACCCCA
ATGCCGCCGATCAGGTATCCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGTCTGATCTTAGACTGGGAATGAACTTC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCC
GATCCTACTGCCACAACCCTCCATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACG
Found at i:12968705 original size:26 final size:26
Alignment explanation
Indices: 12968676--12968728 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12968666 CTGGTCCGAT
12968676 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12968702 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12968728 C
1 C
12968729 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12969250 original size:850 final size:807
Alignment explanation
Indices: 12967406--12969913 Score: 1988
Period size: 807 Copynumber: 3.0 Consensus size: 807
12967396 TTTTGGTATT
* * * * *
12967406 AAACTTGGCAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAGCTCG
1 AAACTCGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
12967471 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-TCCAAACACTTTAATGGCTAC
66 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGT-CAAACACTTTAATGGCTAC
* * * * * *
12967535 TGGCAGCCAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
130 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTCGAGGTTTCATGAG
* * * * *
12967600 GGATAGGGGGCCAATATAAGGGACAAGAACCAGCACCCATCGCACATCACT-TGCACACA-ACCC
195 GGATAGGGGGCCAATATAAGGGCCAAGTACCAACAGCCATCGCACATCA-TGTGCACACACCCCC
* *** * ** *
12967663 CC-GCCC-CCCGATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGAT
259 CCGGCCCACCCAATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTTCGACGAT
* * * * * * *
12967726 GGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG-CCAGCATGTGCTGCCGCAACC
324 GGTGCCCCGGCGAAGAAAAATACAGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCACAACC
** *
12967790 CTCGGTCC-AGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-A
389 CTCGGTCCGAGACCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGA
* * *** * * * * * ** **
12967853 AGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCTGGTCCCCC
454 A-CGTGCGGGCGCCCAGCCGAATAAAAGGGCGAGATACGAAAGCCGGGGATCGACAGGGTCCCTT
* * *
12967918 TCTGCGTGCTGCCGATCCTACTGCCACAACCCTCCA-TCCGGTCCATTCTTAGACTGGGAATGAA
518 TCTGCGTGCT---G----T-C-G---CAACCCT-CAGTCTGGTTCAATCTTAGACTGGGAATGAA
* * * *
12967982 CTCTG-ATGCCTAAGCCAACCGACGAAATGAGCCAGCGGACGGGTGGGCACTACGCCGGCCAGAG
570 CTCCGTATGCCTAAGCCAACCGACGAAACGAG-C-G-GG-C----GGGCACTACGCCGACCAGAA
* * *
12968046 AGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTC-ATATTT
627 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCTA-ATTT
* ** *
12968110 CTGCATGCCAAGGCCATTTTTATGGCTTGTAAA-TCATACAATGGTCCTTTAAGCCTTCACGTGA
691 CTACATGCCAAAACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * ***
12968174 AGTTTCATGCCAAGACGACTCGTTTTCTATTTTTC--ATG-ATTTTTGAAAC
756 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGAAAGCAGTTTGGCCCC
**** * * * * ** * * ** ** ***
12968223 TTTTTGCGGT--TCGGGAT-TTTTTAAAATTT-TT-G--TG--GAAGAAGTTTTGGCCCCAAACT
1 AAACT-CGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-
* * ** * * *** *
12968279 TGGTAGACGTGATCCTTGTATTTTTTTTG-GCATGCACAAAAAAAT-TCAGCTAAAAACTCGAAG
63 TCG-A-A-GTG-TACAAG-A--TTTTGTGACCAT-TTGAAAAAAGTGTC--C------C-C--A-
* * ** **
12968342 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGT
108 TGT-CAA-A------CA-C-TTT-----AA-TGGCTAC-TGGCAG-CA----AA---C--CT-GT
* * * * ** *
12968407 AGCAAACCTGTAAAAT-CTC--AAATGCTCTTTAAGGGGCTATGAGTTGTCGAGGTTTCATGAGG
145 A--AAA--TCTCAAATGCTCTTTAAGGGGC--T--------ATGAGTTCTCGAGGTTTCATGAGG
* * * * *
12968469 GATAGGGGGCCAATATATGGGCCAAGTACCAGCATCCATCGTACATCATGTGCGCACA-CCCCCC
196 GATAGGGGGCCAATATAAGGGCCAAGTACCAACAGCCATCGCACATCATGTGCACACACCCCCCC
* *
12968533 GG-CCACTCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTTCGACGATGG
261 GGCCCACCCAATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTTCGACGATGG
* * *
12968597 TGCCCCGGGGAAGAAAAATGCAGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCT
326 TGCCCCGGCGAAGAAAAATACAGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCACAA-CC-
12968662 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
389 C--TC--G---G-TC-----C---G-A-G-A--CCG-AT-CTTAGACTGGGAATGAACTCCGTAT
* * * * * *
12968727 GCCTAAGTCAACCCACA-AAACGAACGTGCGGGTGCCCAGCCGAATAGAGGGGTGAGATGCGCAA
431 GCCTAAGTCAACCCA-AGAAACGAACGTGCGGGCGCCCAGCCGAATAAAAGGGCGAGATACGAAA
* * *
12968791 GCGGGGGATCGACTGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGTCGTAACCCTCAGTCTGG-
495 GCCGGGGATCGACAGGGT---CC-CT-T-T-CTG-CG----TGCTGTCGCAACCCTCAGTCTGGT
* * *
12968855 TCGAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGACGAAGCAAGCGGGTGGGCG
548 TC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-A--AA-C----GAGCG
* * * *
12968920 GGCGGGCACTACGTCGACCAGAGAGACGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGG
604 GGCGGGCACTACGCCGACCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
12968985 GTTTAGGCACATCTTC-ATATTTCTGCATGCCAAAACCATTTTTATGGCTTGTAAATTCATACAA
669 GCTTAGGCACATCTTCTA-ATTTCTACATGCCAAAACCATTTTTATGGCTTGTAAATTCATACAA
12969049 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGAAAGCA
733 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGAAAGCA
12969114 GTTTGGCCCC
798 GTTTGGCCCC
12969124 AAACTCGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
1 AAACTCGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* **
12969189 AATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTTATGTCAAACACTTTAATGGCTACT
66 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAAACACTTTAATGGCTACT
* * * * *
12969254 GGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGATG
131 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTCGAGGTTTCATGAGG
*
12969319 GATAGGGGGCCAATATAAGGGCCAAGTACCAACAGCCATCGCACATCATGTTCACACACCCCCCC
196 GATAGGGGGCCAATATAAGGGCCAAGTACCAACAGCCATCGCACATCATGTGCACACACCCCCCC
* ** * * *
12969384 GGCCCCCCCGCTCATCGGAATCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTTCGACGATGG
261 GGCCCACCCAATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTTCGACGATGG
* * * * *
12969449 TGCCCCGTCGAAGAAAAATACGGCACCAGCACATGGCCGAGCCCAGCATGTGCTGCCACAACCCT
326 TGCCCCGGCGAAGAAAAATACAGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCACAACCCT
*
12969514 CGGTCCGAGACCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGC
391 CGGTCCGAGACCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAAC
* * **
12969579 GTGCGGGCGCTCAGCTGGCTAAAAGGGCGAGATACGAAAGCCGGGGATCGACAGGGTCCCTTTCT
456 GTGCGGGCGCCCAGCCGAATAAAAGGGCGAGATACGAAAGCCGGGGATCGACAGGGTCCCTTTCT
12969644 GCGTGCTGTCGCAACCCTCAGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
521 GCGTGCTGTCGCAACCCTCAGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * * *
12969709 CAACCGACGAAACGAGCGGGCGGGCACTACGCCGGTCGGAAAGACGTGATGTGCAAGCCGTGGAT
586 CAACCGACGAAACGAGCGGGCGGGCACTACGCCGACCAGAAAGACGGGATGCGCAAGCCGTGGAT
* **
12969774 CGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCTAATTTCTACGTGCCAATGCCATTTTTATGG
651 CGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCTAATTTCTACATGCCAAAACCATTTTTATGG
12969839 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
716 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
12969904 TCTATTTTTC
781 TCTATTTTTC
12969914 ACGATTTTTG
Statistics
Matches: 1333, Mismatches: 215, Indels: 296
0.72 0.12 0.16
Matches are distributed among these distances:
807 175 0.13
808 1 0.00
810 11 0.01
811 3 0.00
812 5 0.00
813 1 0.00
814 5 0.00
815 73 0.05
816 11 0.01
817 6 0.00
818 15 0.01
819 3 0.00
820 3 0.00
821 1 0.00
822 1 0.00
823 2 0.00
824 2 0.00
825 1 0.00
826 2 0.00
827 92 0.07
828 3 0.00
829 4 0.00
830 4 0.00
831 2 0.00
832 1 0.00
833 1 0.00
834 1 0.00
837 2 0.00
838 1 0.00
839 3 0.00
842 2 0.00
843 1 0.00
844 2 0.00
845 4 0.00
846 5 0.00
847 1 0.00
848 2 0.00
850 73 0.05
851 12 0.01
852 107 0.08
854 1 0.00
856 2 0.00
857 9 0.01
858 7 0.01
859 6 0.00
860 7 0.01
861 9 0.01
862 2 0.00
864 1 0.00
867 3 0.00
868 77 0.06
869 87 0.07
870 19 0.01
871 3 0.00
872 5 0.00
873 4 0.00
874 4 0.00
876 1 0.00
879 4 0.00
880 3 0.00
881 1 0.00
885 1 0.00
887 1 0.00
888 3 0.00
889 3 0.00
890 2 0.00
891 1 0.00
894 2 0.00
895 5 0.00
896 123 0.09
897 131 0.10
898 65 0.05
899 4 0.00
900 23 0.02
901 14 0.01
902 13 0.01
903 12 0.01
904 6 0.00
905 4 0.00
906 3 0.00
907 2 0.00
908 16 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (807 bp):
AAACTCGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAAACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTCGAGGTTTCATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAACAGCCATCGCACATCATGTGCACACACCCCCCC
GGCCCACCCAATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTTCGACGATGG
TGCCCCGGCGAAGAAAAATACAGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCACAACCCT
CGGTCCGAGACCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAAC
GTGCGGGCGCCCAGCCGAATAAAAGGGCGAGATACGAAAGCCGGGGATCGACAGGGTCCCTTTCT
GCGTGCTGTCGCAACCCTCAGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACGAGCGGGCGGGCACTACGCCGACCAGAAAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCTAATTTCTACATGCCAAAACCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCGAAAGCAGTTTGGCCCC
Found at i:12969961 original size:26 final size:26
Alignment explanation
Indices: 12969911--12969961 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
12969901 TTTTCTATTT
* *
12969911 TTCACGATTTTTGAAACTTTTTTCGA
1 TTCACGATTTTTGAAAATTTCTTCGA
* *
12969937 TTCAGGATTTTTTAAAATTTCTTCG
1 TTCACGATTTTTGAAAATTTCTTCG
12969962 GAAGGAGTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.12, T:0.51
Consensus pattern (26 bp):
TTCACGATTTTTGAAAATTTCTTCGA
Found at i:12971164 original size:26 final size:26
Alignment explanation
Indices: 12971135--12971187 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12971125 CCGGTCCGAT
*
12971135 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12971161 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12971187 C
1 C
12971188 GTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12972076 original size:26 final size:26
Alignment explanation
Indices: 12972040--12972090 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12972030 CGGTCCGATC
* *
12972040 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAACGAACTCCGTATGG
12972066 TTAGACTGGGAACGAACTCCGTATG
1 TTAGACTGGGAACGAACTCCGTATG
12972091 CTGGGCTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAACGAACTCCGTATGG
Found at i:12972132 original size:32 final size:32
Alignment explanation
Indices: 12972088--12972158 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
12972078 CGAACTCCGT
* * *
12972088 ATGCTGGGCTGGATCGAGGGTTGCATTAGCAC
1 ATGCTGGACTGGACCGAGGGTTGCAGTAGCAC
*
12972120 ATGCTGGACTGGACCGAGGGTTGCGGTAGCAC
1 ATGCTGGACTGGACCGAGGGTTGCAGTAGCAC
12972152 ATGCTGG
1 ATGCTGG
12972159 GCTCAGGCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.18, C:0.20, G:0.39, T:0.23
Consensus pattern (32 bp):
ATGCTGGACTGGACCGAGGGTTGCAGTAGCAC
Found at i:12972596 original size:26 final size:26
Alignment explanation
Indices: 12972559--12972611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12972549 GTTGACTTAG
*
12972559 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12972585 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12972611 G
1 G
12972612 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12973830 original size:183 final size:182
Alignment explanation
Indices: 12973499--12973865 Score: 472
Period size: 183 Copynumber: 2.0 Consensus size: 182
12973489 TAAGCATATG
* *
12973499 GAGTTCATTCCCAGTCAAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCAAAGATCGAACCGGACCAAGGGTTGCGACAGCACATGCTAGGCTCGAGC
* * * *
12973564 AAGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCATCGGAGAACTTGAC
66 AAGTGTTGGTGCTGCATTTTTCATCGTCCGGGCACCATCACTGGAGCATCATCGAAGAACCTGAC
*
12973629 CGACAGCATTGGGGTTCCGACAATCGAGGGTGGCCGG-GGGGGTGTGCACACAT
131 CGACAGCATTGAGGTTCCGACAATCG-GGG-GGCCGGTGGGGGTGTGCACACAT
* * * * * *
12973682 GAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGT
1 GAGTTCATTCCCAGTCAAAGATCGAACCGGACCAAGGGTTGCGACAGCACATGCTAGGCTCGAGC
* *
12973747 ATGTGTTGGTG-TAGCATTTTTCATCGTCCGGGCACCATC-GTCGGAGCATCATCGAAGAACCTG
66 AAGTGTTGGTGCT-GCATTTTTCATCGTCCGGGCACCATCACT-GGAGCATCATCGAAGAACCTG
* * * * **
12973810 ACTGGC-GACATTGAGGTTCCGACGATCGGGGGGTCGGTGGGGGTGTGTGCACAT
129 ACCGACAG-CATTGAGGTTCCGACAATCGGGGGGCCGGTGGGGGTGTGCACACAT
12973864 GA
1 GA
12973866 TGTCCGTTGG
Statistics
Matches: 159, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
181 5 0.03
182 22 0.14
183 132 0.83
ACGTcount: A:0.20, C:0.23, G:0.34, T:0.23
Consensus pattern (182 bp):
GAGTTCATTCCCAGTCAAAGATCGAACCGGACCAAGGGTTGCGACAGCACATGCTAGGCTCGAGC
AAGTGTTGGTGCTGCATTTTTCATCGTCCGGGCACCATCACTGGAGCATCATCGAAGAACCTGAC
CGACAGCATTGAGGTTCCGACAATCGGGGGGCCGGTGGGGGTGTGCACACAT
Found at i:12975056 original size:715 final size:719
Alignment explanation
Indices: 12973682--12975134 Score: 2198
Period size: 715 Copynumber: 2.0 Consensus size: 719
12973672 GTGCACACAT
* * * *
12973682 GAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGT
1 GAGTTCATTCCCAGTCTAAGATCGAACTGAACCGAGGGTTGCGACAGCACATGCTAGGCTCAGGC
* *
12973747 ATGTGTTGGTGTAGCATTTTTCATCGTCCGGGCACCATCGTCGGAGCATCATCGAAGAACCTGAC
66 ATGTGCTGGTGCAGCATTTTTCATCGTCCGGGCACCATCGTCGGAGCATCATCGAAGAACCTGAC
* * * * * *
12973812 TGGCGACATTGAGGTTCCGACGATCGGGGGGTCGGTGGGGGTGTGTGCACATGATGTCCGTTGGG
131 CGACGACATTGAGGTTCCGACGATCGGGGGGGCCGTGGGGGTGTGCGCACATGATGTCCGATGGG
* *
12973877 TGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGGGAACTCACACCCCTT
196 TGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
12973942 TAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGAC
261 TAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAACCACTAAAGTGTCTGAAATGGGGAC
* * *
12974007 ACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTCTATGCATG
326 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTCTATGCAAG
* *
12974072 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
391 CCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAGTTTA
** ** * *
12974137 AAAAATCCCGATTCGCAAAAAGTTTCAAAAATTTTGAAAAATAGAAAATGAGTCGTCTTGCCATG
456 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATAAGTCGTCTTGCCATG
*
12974202 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
521 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCA
* * *
12974267 CATAGAAATATGAAGACGTGCCTAAACCCACTACCACCCTCTCGATGCACGGCTTGCACATCCCG
586 CATAGAAATATGAAGACGTGCCTAAACCCACTACCACCCTATCGATCCACGGCTTGCACATCCCA
* * ** *
12974332 TCTCTCTGGCCGACGTAGTGCCTGCCTGCCCATCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
651 TCTCTCTGGCCGACATAGTGCCCGCCCACCCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
12974397 TACA
716 TACA
* *
12974401 GAGTTCATTCCCAGTCTAAGATC-AGACTGAACCGAGGGTTGCGACAGCACATGTTGGGCTCAGG
1 GAGTTCATTCCCAGTCTAAGATCGA-ACTGAACCGAGGGTTGCGACAGCACATGCTAGGCTCAGG
* * * * * * * * *
12974465 CATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCGTCGGATCCTCGTCGGAGAACCTGA
65 CATGTGCTGGTGCAGCATTTTTCATCGTCCGGGCACCATCGTCGGAGCATCATCGAAGAACCTGA
* * *
12974530 CCGATGACATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGG
130 CCGACGACATTGAGGTTCCGACGATCGGGGGGGCCGTGGGGGTGTGCGCACATGATGTCCGATGG
* *
12974594 GTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCATACCTTGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
12974658 TTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAGGTGTCTTAAATGGGGA
260 TTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAACCACTAAAGTGTCTGAAATGGGGA
*
12974722 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TGTGCAA
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTCTATGCAA
12974786 GCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAGTTT
390 GCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAGTTT
** *
12974851 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAATAAGTCGTGTTGCCAT
455 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATAAGTCGTCTTGCCAT
*
12974916 GAAACTTCACGTGAAGGCTTAAGGG-CCATTGTATGAATTTACAAGCCAAAAAAATGGTATTGGC
520 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGC
** * ** **
12974980 ATGTAGAATTATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCC
585 ACATAGAAATATGAAGACGTGCCTAAACCCA-CTACCACCCTATCGATCCACGGCTTGCACATCC
* * * * *
12975045 CATCTCTCTGGCCGGCATAGTGCCCGCCCACCTACCCGCCTGTTCGTTTCGTCGGTTGGCTTAGG
649 CATCTCTCTGGCCGACATAGTGCCCGCCCACCCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
*
12975110 CATACG
714 CATACA
12975116 GAGTTCATTCCCAGTCTAA
1 GAGTTCATTCCCAGTCTAA
12975135 CATCTGACCA
Statistics
Matches: 660, Mismatches: 72, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
714 63 0.10
715 256 0.39
716 105 0.16
717 41 0.06
718 55 0.08
719 140 0.21
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (719 bp):
GAGTTCATTCCCAGTCTAAGATCGAACTGAACCGAGGGTTGCGACAGCACATGCTAGGCTCAGGC
ATGTGCTGGTGCAGCATTTTTCATCGTCCGGGCACCATCGTCGGAGCATCATCGAAGAACCTGAC
CGACGACATTGAGGTTCCGACGATCGGGGGGGCCGTGGGGGTGTGCGCACATGATGTCCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAACCACTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTCTATGCAAG
CCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAGTTTA
AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATAAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCA
CATAGAAATATGAAGACGTGCCTAAACCCACTACCACCCTATCGATCCACGGCTTGCACATCCCA
TCTCTCTGGCCGACATAGTGCCCGCCCACCCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
TACA
Found at i:12977341 original size:907 final size:890
Alignment explanation
Indices: 12975464--12978104 Score: 3516
Period size: 907 Copynumber: 2.9 Consensus size: 890
12975454 GTTGACTTAG
* * *
12975464 GCATAC-AGAGTTCATTCCCAG-ACTAAGTTTGGACCGAACCGAGGGTTACGGTAGCACATGCTG
1 GCATACGA-AGTTCATTCCCAGTA-TAAGATAGGACCGGA-CGAGGGTTACGGTAGCACATGCTG
* * *
12975527 GGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCATCAT-TGTCGGAGAACCTGGCC
63 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCTGTCGGAGAACCTGACC
* * *
12975591 GACGGCATTGAGTTTGCGGCGATCGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGT-
128 GACGGCATTGGGGTT-CGACGATCGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
12975655 ACAGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
190 A-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
*
12975720 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGCACAC
254 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
12975785 TATTTTCAAGTGGTCACAAAATCTTGTAAACTTC-AAGTTTTTAGCTGAATTTTTTTGTGCATGC
319 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAA-TTTTTAGCTGAATTTTTTTGTGCATGC
* ** *
12975849 CAACAAAAATACAAGGATCACGTCTAAGAAGTTTGGGGCCAAAACGCCTACCAAAAAAATTTTAA
383 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAAATTTTAA
* * * *
12975914 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGT-GTCTTCCCATGA
448 AAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
12975978 AACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCAT
513 AACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
12976043 ACAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCG
578 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATTCCG
* * * * * *
12976108 TCTTTCTGGCCGGCGTAGGGCCCGCCCGTCCATCCGTCCGCCTGCTCATTTCATCGGTTGGCTTA
643 TCTCTCTGGCCGGCGTA-GTCCCGCCCG-CC-CCCGTCCGCCCGCTCATTTCGTCGATTGGCTTA
* * * * *
12976173 GGCATACGGAGCTCATTACCAGTCTATGATCAGACTGGAAT-GAGTGTTACGGAAGCAGGATGGG
705 GGCATATGGAGTTCATTCCCAGTCTATGATCAGAC-CGAATCGAGGGTTACGGAAGCAGGATGGG
* *
12976237 CAGCACGCAGAGGGGGACCCGACCGATCCCCTGCTTGTGCATCCCGCCCATCTGGCCGGCTGAGC
769 CAGCACGCAGAGGGGGACCTGACCGATCCCCTGCTTGCGCATCCCGCCCATCTGGCCGGCTGAGC
* * *
12976302 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGAATAA
834 GCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGAATAA
* * * * * * * *
12976359 GCATATGGAGTTAATTCCCAGTCTAAGATCA-GACCGGATCGAGGGCTAAGGTAGAACATGTTGG
1 GCATACGAAGTTCATTCCCAGTATAAGAT-AGGACCGGA-CGAGGGTTACGGTAGCACATGCTGG
* *
12976423 GCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGCTGGGGCACCATCGCTGGAGCATCGCCAGAG
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT--CT---G--TCG---GAG
12976488 AACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGAGCCGGGGGGTGTGCGCACATGATGTG
119 AACCTGACCGACGGCATTGGGGTT-CGACGATC-GGGG-GCCGGGGGGTGTGCGCACATGATGTG
* * *
12976553 CAATGGGTGATGGTACTTGGCCCTTATATTGGCCTCCTATTCCTCATCAAACCTCAAGAACTCAC
181 CGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
12976618 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCACTAAAGTGTCTGAAAT
246 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
12976683 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAATTTTTAGCTGAATTTTTTTG
311 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTG
* * * * **
12976748 CGCATGCCAAAAAAAATACAAGGATCATGACTACCAAGTTTGGGGCCAAAAATCAGACCAAAAAA
376 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAA
** *
12976813 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAATTGAGTCATCTT
441 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
12976878 GCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTACGAATTTACAAGCCATAAAAACGGCA
506 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCA
* * * *
12976943 TTGGCACGTAGAAATAGGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
571 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
** *
12977008 CATTCCACCTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCCTGTCCGCCCACTCATTTCGTCGAT
636 CATTCCGTCTCTCTGGCCGGCGTAGT-CCCGCCCGCCC-CC-GTCCGCCCGCTCATTTCGTCGAT
* *
12977073 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTATGATCAGACCGAATCGAGGGTTACGGGAGTAG
698 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTATGATCAGACCGAATCGAGGGTTACGGAAGCAG
* * * *
12977138 GATGGGCAGCACGCAGAGGGGGACCTGATCGATCCCCTGCTTGCGCATCCCGCCCTTTTGGTCGG
763 GATGGGCAGCACGCAGAGGGGGACCTGACCGATCCCCTGCTTGCGCATCCCGCCCATCTGGCCGG
* * **
12977203 CTGAGCGCCCGCATGCTCGTTCCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCCA-TCTAA
828 CTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCCAGAATAA
* * *
12977266 GCATACGAAGTTCATTCCCAGTATAAGATAGGACTGGACGGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTATAAGATAGGACCGGAC-GAGGGTTACGGTAGCACATGCTGGG
* **
12977331 CTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC-GTCGGAGAACCTGA-TTA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCTGTCGGAGAACCTGACCGA
* * * * *
12977394 GCGGCATTGGGGTTCTAGCGATCGGCAGGGCCAGGGGGTGTGCGCACATGATATGCGGTGGGTGC
130 -CGGCATTGGGGTTCGA-CGATCGG--GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGA
*
12977459 TGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
191 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
* * * * *
12977524 AGAGCATTGGAGATTTTACAGGTTTGCCGCCAATAGCCATTAAACTGTCAGAAATGGGGACACTT
256 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
12977589 TTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGACAA
321 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
12977654 AAAAAATACAAGGATCACGTCTACCGAGTTTGGGGCCAAAACTCCTTCTAAAAAAA-TTTAAAAA
386 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAAATTTTAAAAA
* * **
12977718 ATCTTGAACCGCCAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
451 ATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
12977783 TTCATGTGAAGGCTTAAGGGACCATTGTATC-AATTTACAAGCCATAAAAATGGCATTGGCATGC
516 TTCACGTGAAGGCTTAAGGGACCATTGTA-CGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
12977847 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA-TCCTGT
580 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATTCC-GT
* * * * * *
12977911 CTCTCTGGCCGACGTAGT-GC-CCCGCACCCGCCCACCCGCTCGTTTCGTC-AGTTGGCTTAGGC
644 CTCTCTGGCCGGCGTAGTCCCGCCCGCCCCCGTCCGCCCGCTCATTTCGTCGA-TTGGCTTAGGC
** * * * * * ** *
12977973 ATATATAGTTCAATCCCAGTCTAAGATCAGACCAAATCGAGGGTTACAGCAGCAGGATCAGTAGC
708 ATATGGAGTTCATTCCCAGTCTATGATCAGACCGAATCGAGGGTTACGGAAGCAGGATGGGCAGC
*** * * * * **
12978038 ATATAGATGGGGACCTGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCC
773 ACGCAGAGGGGGACCTGACCGATCCCCTGCTTGCGCATCCCGCCCATCTGGCCGGCTGAGCGCCC
12978103 GC
838 GC
12978105 CGGGGGGTGT
Statistics
Matches: 1528, Mismatches: 185, Indels: 71
0.86 0.10 0.04
Matches are distributed among these distances:
889 1 0.00
890 136 0.09
891 2 0.00
892 6 0.00
893 1 0.00
894 3 0.00
895 290 0.19
896 289 0.19
897 2 0.00
898 1 0.00
899 3 0.00
901 2 0.00
903 3 0.00
905 1 0.00
906 351 0.23
907 431 0.28
908 6 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGAAGTTCATTCCCAGTATAAGATAGGACCGGACGAGGGTTACGGTAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCTGTCGGAGAACCTGACCGAC
GGCATTGGGGTTCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGATGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAAATTTTAAAAAATCTC
GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATTCCGTCTCTCTG
GCCGGCGTAGTCCCGCCCGCCCCCGTCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATATGGAG
TTCATTCCCAGTCTATGATCAGACCGAATCGAGGGTTACGGAAGCAGGATGGGCAGCACGCAGAG
GGGGACCTGACCGATCCCCTGCTTGCGCATCCCGCCCATCTGGCCGGCTGAGCGCCCGCACGCTC
GTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGAATAA
Found at i:12979533 original size:26 final size:26
Alignment explanation
Indices: 12979503--12979555 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12979493 GTTGACTTAG
*
12979503 GCATACAGAGTTCGTTCCC-AGTCTAA
1 GCATACAGAGTTCATTCCCTA-TCTAA
12979529 GCATACAGAGTTCATTCCCTATCTAA
1 GCATACAGAGTTCATTCCCTATCTAA
12979555 G
1 G
12979556 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCTATCTAA
Found at i:12980433 original size:26 final size:26
Alignment explanation
Indices: 12980404--12980454 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12980394 GTTGACTTAG
*
12980404 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12980430 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
12980455 TGATCGAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12981279 original size:903 final size:897
Alignment explanation
Indices: 12978630--12981940 Score: 4354
Period size: 902 Copynumber: 3.7 Consensus size: 897
12978620 GTTGACTTAG
* * *** * *
12978630 GCATACGGAGTTCATTCCCAGTCTAAGATGGGATTGGACCGAGGGCTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** ** * * * *
12978695 CTCGAGCAGGTGCTGGTGCTACATTTTTCTTCGTTGGGGCACTATCACCGTAGCATTGC-CGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCTCAGAG
* *
12978759 AACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTG
131 AACCTGATCGACGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* ** * * *
12978824 -TAAAGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12978888 ACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12978953 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTGTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTG
* * * *
12979018 TGCATGCCAACAAAAA-ATCGAGGATCACGTCTACCAAGTTTGGGGCTAAAACTACTTCCAAAAA
390 TGCATGCCAACAAAAATA-CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAA
*
12979082 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * **
12979147 TGCCATGTAACTTCACATGAAGGATTAAGGGACCATTGTATGAATTTAAAAGATATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12979212 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
** *
12979277 GCATCCCGTCTCTCTGGCCAACGTAGTGC-CCGCCTGCCTGTCC-GCTCGTTTCGTCGGTTGGCT
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCGCCGCC-GCCCG-CCTGCTCGTTTCGTCGGTTGGCT
* * * * * *
12979340 TAGGCATACGGAGTTCATTCCCAGTTTAACAT-TGACCCAGACCAAGGGTTGCAGCAGCGGGATC
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGA-CGAGGGTTGCGGCAGCAGGATC
* ** * *
12979404 GGCAGCACACAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGA
774 GACAGCACACAGAGGGGGACCCGGCCGATCCTAGGCTTGCACATCCCACCCCTCTGGCCGGCTGA
* * * *
12979469 GCACCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCGTTCCCAGTCTAA
839 GC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
12979529 GCATACAGAGTTCATTCCCTA-TCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCC-AGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
12979593 GCTCGGGCATGTGTTAGT-CTCGTATTTTTCTTTGTCGGGGCACCATCACCGGAGCATC-ATCAG
65 GCTCGGGCATGTGCTGGTGC-CGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCTCAG
* * * *
12979656 AGAACCTGACCGGCGACATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTACGCACATGATGT
129 AGAACCTGATCGACGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
12979721 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12979786 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAACCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12979851 TGGGGACACTTTTTTCAAATGGCCACAAAATATTGTACACTTGGAGTTTTTAGCTGAATGT-TTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TATTT
* * *
12979915 TGTGCATGCCAACAAAAAAACAAGGATCACGGCTACCAAGATTGGGGCCAAAACTCCTTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAA
** * * *
12979980 AAATTTT-AAAAATCTTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTA
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
12980044 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
12980109 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
582 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * *
12980174 CGCATCCTGTCTCTCTGGCCGGCGTAGTGCCTGCGCGCCCGCCCACCTGCTCATTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-C-GC-CG-CCGCCCGCCTGCTCGTTTCGTCGGTTG
* * * * *
12980239 GCTTAGGTATACGGAGTTCATTCCCAGCCTAAGGTCAGACCAGACTGAGGGTTGCGACAGTAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGA
* * * * * * *
12980304 TCGATAACACGCAGTGGGGGACCCGACCGATCCTAGGCTTGCACATCCCACCCCTTTGGCTGGCT
772 TCGACAGCACACAGAGGGGGACCCGGCCGATCCTAGGCTTGCACATCCCACCCCTCTGGCCGGCT
* ** *
12980369 GAGCGCCCGCACGCTTGTTTCACGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
12980430 GCATACGGAGTTCATTCCCAGTCTATGATCGAACCAGATCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* **** * *
12980495 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGTTGGCATCACTGGAGCAGCGCT-AGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCTCAGAG
* * *
12980559 AACCTGATCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
131 AACCTGATCGACGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
12980624 TGATGGGTGATGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
12980689 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
12980754 GGGGACAATTTTTTGAAATGGTCACAAAATCTTGTACAATTCAAGTTTTTAGCTGAA-TATTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTA-TTTT
* * * * * *
12980818 GTGCCTGCCAACAAAAATACCAGGATCAAGTCTACCACGTTTGAGGCCAAAATTCCTTACGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAA
* * * *
12980883 AATTTTAAAAAATC-CTTAATCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAATGAGTCGTC
453 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
12980947 CTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAGAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
12981012 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACAAGCCTATCGATCCGCGACTTG
582 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * * * *
12981077 CACATCCCATATCTCTGGCCGGCGTAGTGGTCGCTCGTCCGCCCGCCTGCTTGTTTCATCAGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGT-G-CGC-CG-CCGCCCGCCTGCTCGTTTCGTCGGTTG
*** * *
12981142 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTACGGTAGCAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGA
* ** * *** * * ** *
12981207 TCGACAGCACATAGAAAGGGAGCCGGTAAATCCTTGGCTTGCTCATCCTGCCCCTCTGGCCAGCT
772 TCGACAGCACACAGAGGGGGACCCGGCCGATCCTAGGCTTGCACATCCCACCCCTCTGGCCGGCT
* *
12981272 AAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * **
12981333 GCATACGGAGTTGATTCGCAGTCTAAGATC-AGATCAAACCGAGGGTTGTGGCAGCACAGGCTTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
12981397 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGCAGGGGCACCATCACCGGAGCATCG-TCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCTCAGA
* ** * * * *
12981461 GAACCTAATCGGTGACATTTGGGTTCCGACGATCGGGGGACTGGGGGGTGTGCGCACATCATGTG
130 GAACCTGATCGACGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
12981526 CAACGGGT-ACGGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCA
195 CGATGGGTGA-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
12981590 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
12981655 TGGGGACACTTTTTTCAAAAGGTCATAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTATTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTT
**
12981720 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATTTTTC-AAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCGAAAA
* *
12981784 AAATTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
12981849 TGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATGACAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
12981914 ATTGGCACATAGAAATATGAAGATGTG
583 ATTGGCACACAGAAATATGAAGATGTG
12981941 ACTTGCGTAA
Statistics
Matches: 2100, Mismatches: 280, Indels: 62
0.86 0.11 0.03
Matches are distributed among these distances:
898 229 0.11
899 370 0.18
900 5 0.00
901 333 0.16
902 645 0.31
903 515 0.25
904 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCTCAGAG
AACCTGATCGACGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCGCCGCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCAGGATCGACAGCA
CACAGAGGGGGACCCGGCCGATCCTAGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12981343 original size:26 final size:26
Alignment explanation
Indices: 12981307--12981359 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12981297 GTTAACTTAG
12981307 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
12981333 GCATACGGAGTTGATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12981359 G
1 G
12981360 ATCAGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12982042 original size:26 final size:26
Alignment explanation
Indices: 12982013--12982065 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12982003 GTTGGCTTAG
*
12982013 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12982039 GCATACGTAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12982065 G
1 G
12982066 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12982970 original size:26 final size:26
Alignment explanation
Indices: 12982918--12982970 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12982908 GTTGACTTAG
*
12982918 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
12982944 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12982970 G
1 G
12982971 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12983746 original size:14 final size:14
Alignment explanation
Indices: 12983727--12983763 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
12983717 TCGTATTTTT
12983727 CTTCGTCGGGGCAC
1 CTTCGTCGGGGCAC
12983741 CTTCGTCGGGGCAC
1 CTTCGTCGGGGCAC
*
12983755 CATCGTCGG
1 CTTCGTCGG
12983764 AGCATCGTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.08, C:0.35, G:0.35, T:0.22
Consensus pattern (14 bp):
CTTCGTCGGGGCAC
Found at i:12985246 original size:26 final size:26
Alignment explanation
Indices: 12985216--12985268 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12985206 GTTGACTTAG
* *
12985216 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12985242 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12985268 G
1 G
12985269 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12985354 original size:14 final size:14
Alignment explanation
Indices: 12985335--12985371 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
12985325 TCGTATTTTT
12985335 CTTCGTCGGGGCAC
1 CTTCGTCGGGGCAC
12985349 CTTCGTCGGGGCAC
1 CTTCGTCGGGGCAC
*
12985363 CATCGTCGG
1 CTTCGTCGG
12985372 AGCATCGTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.08, C:0.35, G:0.35, T:0.22
Consensus pattern (14 bp):
CTTCGTCGGGGCAC
Found at i:12986170 original size:26 final size:26
Alignment explanation
Indices: 12986134--12986184 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12986124 ATTGACTTAG
* *
12986134 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12986160 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
12986185 TGATCAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12987034 original size:903 final size:890
Alignment explanation
Indices: 12985197--13002741 Score: 14428
Period size: 902 Copynumber: 19.4 Consensus size: 890
12985187 CTCGTCTCTA
* *
12985197 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGCATACGAAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-ATT--CA
* * * * *
12985262 GTCTAAGATCAGACCAGACCGAGGTTTACAATAGCACATGCTGGACTCGGGCATGTACTGGTGTC
63 ATCT-AGATC--ACC-GA--G-GG-TTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
* * * *
12985327 GTATTTTTCTTCGTCGGGGCACCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
120 GCATTTTTC-T--T-----CA----C--CAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
* * * *
12985392 CCGGCAGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGGTGTGCTCACATGATGTGCGATGG
171 CCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGG
12985457 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
234 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* *
12985522 TTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGAC
299 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
12985587 ACTTTTTTCAAAATGGTCGCAAAATCTTGTACACTTCGAATTTTTAGCTG-A-ATTTTTGTACGC
364 ACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGT--GC
* * * *
12985650 ATGCCAACAAAAACACAAGGATTAGGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
426 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATT
* * * *
12985715 TTAAAAAATCCCGAACCAG-AAAAA-TTGTCGAAAATCATGAGAAATAGAAAACGAGTCATCTAG
491 TTAAAAAATCCCGAACC-GTAAAAAGTT-TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
12985778 CCATTAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCAT
554 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
12985843 T-GCACGTAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
619 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
12985907 ATCTCGTCTCTCTGGCCGGCGTAGT-GCCTGCGCGCCCGCCCGCCCGCTCATTTCATCGGTTGGC
684 ATCCCGTCTCTCTGGCCGGC-TAGTGGTC-GCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGC
* * * * * **
12985971 TTAGGCATACGGAGTTCATTCCCAA-CCTAAGGTCAGACCAGACTGAGGGTTGTGATAGCAGGAT
747 TTAGGCATACGGAGTTCATT-CCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * ** * * * *
12986035 TGGCAGCACGCAGTGGGGGACCCGACCGATCCTAGGCTTGCGCATCCCACCCTTCTGGCTGGATG
811 CGGCAGCACGCAGAGGAGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
12986100 ACCGCTCGCACGCTT
876 AGCGCCCGCACGCTC
* *
12986115 GTTTCGTGGATTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-ATT--CA
* *
12986180 ATCTATGATCAAACCGGATCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-C
63 ATCTA-GATC--ACC-GA--G--GGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
** * * *
12986244 AGCATTTTTCTTCACCAGGGTGCCATCGCCAGAGCAGCGCCAGAGAACCTGACCGGCGGCATTGG
120 -GCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* * *
12986309 AGTTCTGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGATGGTACTTG
184 GGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
12986374 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCTTTT
247 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
12986439 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
312 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
12986504 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATATTTTTGTGCCTGCCAAC-AAAATAC
377 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATAC
* * * * * *
12986568 AAGGATCATGTCTATCAAGTTTGGGGCCAAAATTCCCTACGAAAAAATTTGAAAAAATCTCGAAT
442 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAAAATCCCGAAC
* * * *
12986633 CGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAATGAGTCGTCCTGCCATGAAACTTCATGAG
507 CGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
12986697 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGTATTGGCACACAGAAATATG
571 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * * * *
12986762 AAGATGTGCCTAAACCCACCTACAACCCTATCGATCCGCGACTTGCACATCCCGTATCTCTGGCC
636 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
12986827 GGCATAGTGGTCGCCCGCCTGCCCGTCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
701 GGC-TAGTGGTCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
12986892 TTCAAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGTAGAGGAGG
765 TTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGAGG
* ** * * * *
12986957 AGCCGGCCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTAAGCGCCCGCACGCTC
830 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
12987018 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTGATTCACA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-ATTCA-A
** * **
12987083 GTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCACAGGCTTTGCTCGGGCATGTGCTGGTG-C
64 -TCT-AGAT-----C--ACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
* * * * *
12987147 TGCATTTTT-TTTA-CAGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGACATTT
120 -GCATTTTTCTTCACCA-GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * *
12987210 GGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATCATGTGCGATGGGTGCAGGTACTTGG
183 GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
12987275 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGGGCATTTG
248 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
*
12987340 AGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
313 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
12987405 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCT-AAT-TGTTTTGTGCATGCCAAAAAAAACAC
378 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATAT-TTTTGTGCATGCCAACAAAAATAC
* * *
12987468 AAGGATCATGTCTACCAAGTTTGTGGCCAAAACTCCTTTCGAAAAAAATTTTAAAAACTCCCGAA
442 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTTCG-AAAAAATTTTAAAAAATCCCGAA
* * * *
12987533 CCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTCCCATGAATCTTCACGTG
506 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
12987598 AAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGCAAAAATATG
571 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
12987663 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACCTGCGCATCCCGTCTCTCTGGCC
636 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
12987728 GGC--GTAGT-GCCCGCCTGCCCG--T--TTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
701 GGCTAGTGGTCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** * * * *
12987786 TCCCAA-TCTAAAATCAGGCCGGAAGGAGGGTTCCGGCAGGAGGATCGGTAGCACGTAGAGTG-G
766 T-CCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG-GAG
* * * *
12987849 GACCCGATCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCACGCTC
829 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
12987911 GTTTCATGGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAAG-AT-C--AG-------A-C
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTATTCAATC
* * *
12987964 TAG---ACCGAGGGTTACGATAGTACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTT
66 TAGATCACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTT
** * * * * * *
12988026 CGTCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACAGGCGGCATTGGGGTTCCGGCGAT
131 CACCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
*
12988091 CGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTG
196 CGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
12988156 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGGGCATTTGAGATTTTACAG
259 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
12988221 GTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
12988286 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
389 TTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
* * *
12988351 TACCAAGTTTGGGGCCGAAACT-CCTCCCGAAAAAATTTTAAAAAATTCCCGAACCATAAAAAGT
454 TACCAAGTTTGGGGCCAAAACTCCCT-TCGAAAAAATTTTAAAAAA-TCCCGAACCGTAAAAAGT
* * * *
12988415 TTCAAAAATCATGAAAAACAAAAAATGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCTTAAGG
517 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
12988480 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGTCT
582 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
* * ** *
12988545 AAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTATCTCTGATCGGC--GTAGT-
647 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCTAGTGGTC
** *
12988607 ----GCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAA
712 GCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAA
* * * * * *
12988664 GATCGGACCGGGCCAAGGGTTGTGGCAGCAGGATCGGCAACACGCAGAGGGGGACCCGATCGATC
777 GATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGAGGACCCGATCGATC
* * * * * *
12988729 CCCGGCTTACGCATCCTGCCCCTTTAGCCGGCTGAGCACCCGCACACTC
842 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * *
12988778 ATTTCGTGGGTTGACTTAGGAATACGGAGTTCAGTCTCAGTCCAAG-AT-C-G-G-------ATC
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTATTCAATC
* *
12988832 -AG---ACCGAGGGTTACGACAGCACATGCTGGGCTAGGGCATGTGTTGGTG-CTGCATTTTTCT
66 TAGATCACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC-GCATTTTTCT
** * *** * * * * *
12988892 TCGTCGGGGCACCATATTCGGATCATCGCCGGAGAACCTGACTGACAGCATTGGGGTTCCGATGA
130 TCACCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * * *
12988957 TCAGGTGGGTCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCCGGTACTTGGCCCTTATATT
195 TC-GG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
12989022 GGCTCCCTATCCCTCATCAAACCT-AGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
258 GGCCCCCTATCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
12989086 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
322 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
12989151 TCTTGTAAACTTCGAGTTTTTACCTGAAT-TGTTTTGTGCATGCCAACAAAAAAACAAGGATCAT
387 TCTTGTACACTTCGAGTTTTTAGCTGAATAT-TTTTGTGCATGCCAACAAAAATACAAGGATCAT
* * * *
12989215 GTCTACCAAGTTTGGGGCCAAAAATCCTCTT-GAAAAAATTTTAAAAAAATCTCAAACTGTAAAA
451 GTCTACCAAGTTTGGGGCCAAAACTCC-CTTCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAA
* ** * * * *
12989279 AGTTTCAAAAGTTGTGAAAAATAAAAAACGAGTCGTTTTGCTATGAACCTTCACGTGAAGGCTTA
514 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
12989344 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTG
579 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* * * * *
12989409 CCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTATCTGGCTGGTGTACT
644 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG-CTAGT
** * * * *
12989474 GCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGT
708 GGTCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGT
* * * *
12989539 CTAAGATCAAACCAGACCGAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGA-GAGGGACCCGGA
773 CTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGA-GGACCC-GA
* * * *
12989603 -CGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCACACGCTC
836 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
12989657 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAAG-AT-C-G-G-------ATC
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTATTCAATC
* * * *
12989711 -AG---ACCGAGGGTTAC-AGCAGCACATGCTGGGCTTGGGCATGTGCTGATGCCACATTTTTCT
66 TAGATCACCGAGGGTTACGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCT
* * * * *
12989771 TCACC-GGCGCACCATCACCGGATCATCACCGGAGAACCTGAACGGCGGCATTGAGGTTCCGACG
130 TCACCAGG-GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
*
12989835 ATCAGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
194 ATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
12989900 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACGCCCCCTTAATGAGCATTTGAGATTTTACA
258 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
12989965 GGTTTGCTGCCAGTCGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCATATGGTCACAAAAT
323 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
12990030 CTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
388 CTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
* * * *
12990095 CTACCAGGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTT
453 CTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* *
12990160 TCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGG
518 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
12990225 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAATATGAAGATGTGCCTA
583 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * * * *
12990290 AACCCACCTACCACCCTATTGATCCATC-GCTTGCACATCCTGTCTCTCTGGCAGGCAAAGTGGC
648 AACCCACCTACCACCCTATCGATCCA-CGGCTTGCGCATCCCGTCTCTCTGGCCGGC-TAGT---
* *
12990354 CGCCCGCTCGCCCGCCCGCCCGCCCGGTCGCTCGTTTCGTCAGTTAGCTTAGGCATACGGAGTTC
708 -G---G-TCGCCCGCCCGCCCG-CC--T-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * ** *
12990419 ATTCCAAGTCTAAGATTAGACCGGACTGAGGGTTACGGCAGCAAGATTGGCAGCACATAGAGGAA
764 ATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGAG
* * * * * * * *
12990484 GACCCGATCGATCCTCGGCTTTCGCATACCGCCACTCTAGCTGGCTGAGCGCCCGTACGCTT
829 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
12990546 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-ATT--CA
* ** ** * ** * * **
12990611 GTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCCAGTCT-AAG-ATCG-GATCGAAT
63 ATCT---A---GATC--ACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCAT-GTGCTGGTGT
** * ** * * * * * * * * * *
12990673 CG-AGGGTTGCGGCAACA-GG-A--TTGGCAGCGTGCA--G-AGGGGGACCCGACCGATCCCTGG
119 CGCA-TTTTTCTTCACCAGGGCACCATCGCCG-GAGCATCGCCGGAGAACCTGACCG---GC-GG
** * * ** * * * * * * * * *
12990730 C-TTGTGCATCCCGCCCCTC---TGGCCGGTTGAGCG-CCTGCACGCTCAT-TTCG-TGGTTGAC
178 CATTG-GGGTTCCGACGATCGGGGGGCCGG-GGGGTGTGC-GCAC-ATGATGTGCGATGGGTG-C
** * * ** * ** * *
12990788 TAAGGGATAC--GG-AGTT-GATT--CCCAGTCTAAGCATACGGAGTTCATTCC-C-AG-TCTAA
238 T---GG-TACTTGGCCCTTATATTGGCCC--CCTATCCCT-C--A--TCAAACCTCAAGAACTCA
* ** ** ** ** * ** * * **
12990844 GACTGGACCGGATCGAGTGTTGCGGCAGCACATGCTAGGCTCGGTCATG-TGCTGGT-GCCA-T-
292 CAC--CCCCTTAAAGAGCATT--TG-AG---ATTTTA--C-AGGT-TTGCTGCCAGTAGCCATTA
* * *** * ** ** * * * * *
12990905 AATTTTCTTCGACGGGG-CACCATCGTCAGA-GCATCATCAGAGAACCTAATCGGTGAC-GTTGG
345 AAGTGTCTGAAATGGGGACACTTTTTTCAAATG-GTCA-CA-A-AATCT--T--GT-ACACTTCG
* * * * ******** * ** * ** * * *
12990967 GGTTCTGACGATCGGAGGGGCCGGGGGGTGTGCGC-ACATGATGTGCGATGGGTGC-TGGTACTT
401 AGTTTTTA-G--CTGA-ATATTTTTGTGCATGC-CAACA-AAAATAC-AAGGAT-CAT-GT-C-T
* * * *** ** * *
12991030 GGCCCTTA-TATT-GGCCCCCTA-TCCC-TC-ATCAAAAA---TACAAGGATCACGTCTACCGAG
455 --ACC-AAGT-TTGGGGCCAAAACTCCCTTCGA--AAAAATTTTA-AAAAATCCCG--AACC--G
* ** * **** ***
12991087 TTTGCGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGT-TT--C--G
509 --T---A--AAAAGT--TT-C--AAAAATCATGAAAAATAGAAAAC-G--AGTCGTCTTGCCATG
* *** * * * * * * *
12991147 AAA-ATCA--TGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGG
559 AAACTTCACGTGAAGGCT---TAA-GGGAC--CATTG-TATG-AA-TTTAC---AAGCCATAA--
* * ** * * * * ** **
12991208 GACGATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATAA-AGATGTGCC
610 -A--AATG---GCATTGGCACG-CAGAAATAT-GAA---G-ATG-TG-CCTA-AACCCA----CC
* * * ** ** * *
12991272 TAAACCCACCTACCACCCTATCGTTCCACGGCTTGCGCATACGGAGT-TCATTCCCAGTCTA-AG
656 T--A--C------CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-TGGCC-GGCTAGTG
* * * * * * * **
12991335 ATCGAACTG---GACCG--AG---GGTT-G-CGG-TAGC--AGG-AT-CGGCAG--CA--CGTAG
709 GTCG-CCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG-AGTTCATTCCAAG
***** * * * ** * * ** ** ** * * ** *
12991381 AGGGGGACCCGA-CTGATCCCCGGCTTGC-GCATCCCGCCCCTCTG-GC-CAGCTGAGCACCCG-
772 TCTAAGATCAGACCGGA-CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGAGGACCCGA
** *** * ** * * * * *
12991441 -C-A----C-G-TT---TTTTTTG----T-GGGTTGACTTAG-GCATACG-AAGTTC
836 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC--CCGCACGCTC
* *** * *
12991480 -ATTC-CCAG-T--C-TAAGCATATGGAGTTCATTCCCAGTCTAAG-AT-C-G-G-------ATC
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTATTCAATC
* * * * * * **
12991528 --G--GA-CGAGCGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCTTATTTTTCTT
66 TAGATCACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTT
**** *
12991588 CGTTGGGGCACCATCGCCGGAGCATCG--GAGAGAACCTGACCGGCGGCATTGGCGTTCC-AGCG
131 CACCAGGGCACCATCGCCGGAGCATCGCCG-GAGAACCTGACCGGCGGCATTGGGGTTCCGA-CG
* *
12991650 ATC-----G-AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTG
194 ATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
** *
12991709 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAA
259 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* ** * * *
12991774 GATTGCTGCCAGTAGCCATTAAAGTGTCTGGTATCGAGACATTTTTTTCAAATGGTCACAAAATC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
12991839 TTGTACACTTCGAGTTTTTGGCTGAATGTTTTTGTG-ATGCCAACAAAAATACAAGGATCACGTC
389 TTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
* * * * * * *
12991903 TAACAAGTTTGGGGGCAAAAAT-CCTTCCAAAAAATTTTTAAAAAATCTCAAACCGCAAAAAGTT
454 TACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTT
* * *
12991967 TCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCCTAAGGG
518 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
12992032 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGGCTA
583 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * *
12992097 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTAGCCGGC--GTAG-CG
648 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCTAGTGGTCG
** * * * *
12992159 CCCGCCCGCCCATCTGCTCGTTTCATCGATTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAG
713 CCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAG
* * * * * * * * * *
12992224 AT-TGAATC-AAGCTGAGGGTTGCGAGC-GTAGGATTGGTAGCACGTAGAGGGGGACCCGGTCGA
778 ATCAG-ACCGGA-CCGAGGGTTGCG-GCAGCAGGATCGGCAGCACGCAGAGGAGGACCCGATCGA
* * * * *
12992286 TCCCCAGCTTGCGTAACCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTC
840 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
12992337 GTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-ATT--CA
* ** * *
12992402 GTCTAAGATCAGACCGAACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCC
63 ATCT-AGAT-----C--ACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
* *** * * *
12992467 GTATTTTTCTTCGTTAGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGC
120 GCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* *
12992532 GTTCC-AGCGATC-----G--GGGGGGTGTGCGCACATGATATGCGATGGGTGCCGGTACTTGGC
185 GTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
12992589 CATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
249 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
12992654 GATTTTACAAGATTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGG
314 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
12992719 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAAGAAAAATACAA
379 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAA
* * * * *
12992784 GGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTCAAAAAAATTTTAAAAAATCCTGAACCG
444 GGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAAAATCCCGAACCG
* ** *
12992849 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
509 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
12992914 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
574 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
*
12992979 ATGTGCCTAAACCCACCTA-CACCTTATCGATCCACGGCTT-CGCATCCCGTCTCTCTGGCCGGC
639 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
** *
12993042 GTAGTGCCCACCCGCCCGTCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
704 -TAGTG----GTCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * * *
12993106 ATTCCCAGTCTCAGATCAGACCAGACCGAGGGTTGTGGTAGGAAGATCGACAGCACGTAGAGG-G
764 ATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGAG
* * * * * *
12993170 GGCCTCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCAT-A-----CGTATGCTC
829 GACC-CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC-TGAGCGCCCGCACGCTC
** * *
12993228 GTTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTGATTCCCC
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-ATT--CA
* * *
12993293 GTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGTC
63 ATCT---A---GATC--ACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
** *
12993358 GCATTTTTCTTCGTC-GAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGG
120 GCATTTTTCTTCACCAG-GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* * *
12993422 GGTTCCGGCGATCGGGGGGGCCGGGGGGAGATGTGCATGCATGATGTGCGATGGGTGCTGGTACT
184 GGTTCCGACGATC-GGGGGGCCGGGGGGTG-TGCGCA--CATGATGTGCGATGGGTGCTGGTACT
* * *
12993487 TGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGT
245 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
* * * * *
12993552 TTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCCGGAATGAGGACACTTTTTTCAA
310 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
12993617 ATGGTCATAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAAT
375 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAAT
* * *
12993682 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCTCA
440 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTT-CGAAAAAATTTTAAAAAATCCCG
*
12993746 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
504 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
12993811 TGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAACA
569 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
12993876 TGAAGATGTGCCTAAACCCACCTACCACCC--T--AT---C--C---CG--T--C-TCT-T-TGG
634 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
12993922 CTGGC--GTAGT-GCCCGCCCG--C-CC-GCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTC
699 CCGGCTAGTGGTCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * ** * * * *
12993980 ATTCCCAGTGTAAGATCGGATCAGACTGAGGGTTGCTGCAATAGGATCAGCAACACACGGAGGAG
764 ATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGAG
* * * * * * * *
12994045 GACCC-AGCCGATCCTCGACTTGCGTATCCCGCCCTTCTGGCCGGCTGAGTGTCCGTACGCTC
829 GACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
12994107 GTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-A-T-TCA
* * * * * *
12994172 GTCTAAGATCAGATTGGAGCAAGGGTTGC-AGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGC
63 ATCT-AGATC-------ACCGAGGGTTACGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
* ** * * * * *
12994236 CACATTTTTCTTTGCC-GAGGCACCATCGTCGGAGCATTGCCAGAGAACCTGACCGACGACATTG
119 CGCATTTTTCTTCACCAG-GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * * * *
12994300 GGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCAGATGTTGTGTGATGGGTGCTGGTACTTG
183 GGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* ** * *
12994365 GCCCATATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCACCTGAAAGAGCATTT
247 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
* *
12994430 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTCCAAAT
312 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
12994495 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGTCAAAAAAAATAC
377 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATAC
*
12994560 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCTGAAAAAATTTTAAAAAATCCCGAA
442 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTTC-GAAAAAATTTTAAAAAATCCCGAA
* * *
12994624 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTAACGTG
506 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
12994689 AAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCATGCAAAAATAT
571 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACGCAGAAATAT
* * * *
12994754 GAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCTTCTCTCTGGT
635 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * *
12994819 CGGCATAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTC
700 CGGC-TAGTGGTCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * ** * * * * ** *
12994884 ATTTCC-AGTCTAGGATTAGACTAGACCGAGGGTTACGGTAGTAGGATTGGCAGCACATAGAGGG
764 A-TTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGA
* * * *
12994948 GGACCCGATCGATCCCCGGCTTGCACATCTCGCCCCTCTGGCTGGCTGAGCGCCCGCACGTTC
828 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
12995011 GATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-ATT--CA
* * * *
12995076 GTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGTTGGTGTC
63 ATCT-AGAT-----C--ACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
* *** * **
12995141 ACATTTTTCTTTGTCAGGGCACCATCGTCGGAGCATCGCTAGAGAACCTGACCGGCGGCATTGGG
120 GCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* *
12995206 GTTCCGATGATCGAGGGGGCCGGGTGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
185 GTTCCGACGATCG-GGGGGCC--G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
12995271 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
246 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
**
12995336 TGAGATTTTACAGGTTTGCTATCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
311 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
12995401 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
376 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATA
* *
12995466 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCG-AAAAATTTTAAAAAATCCCGA
441 CAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTT-CGAAAAAATTTTAAAAAATCCCGA
* *
12995529 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGT
505 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * * *
12995594 GAAGGCCTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGAAAAAATAT
570 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * * *
12995659 GAAGATGAGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCTTCTCTCTGGC
635 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
12995724 CGGCATAGTGCTCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTAGGTTGGCTTAGGCATATGGA
700 CGGC-TAGTG---G-TCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * ** * * * * * * * *
12995789 GCTCATTTCTAGTCTAAGATCAGACTAGACTGAGGGTTGCAGTAGTATGATTGGCTGCACGTAGA
760 GTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * * *
12995854 GGGGGACCCGGTAGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCGGTTGAGCGCCCGCACGTT
825 GGAGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
12995919 C
890 C
* * * *
12995920 GTTTTGTGGGTTGACTCAGGAATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-ATT--CA
* ** * *
12995985 GTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
63 ATCT-AGAT-----C--ACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
* * * * **
12996050 GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGGCCAACGGCATTGGG
120 GCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* *
12996115 GTTCCGGCGATCGGATGGGCCGGGGGGTGTGCGCAAATGATGTGTGAGCAAATGATGTGTGAGCA
185 GTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGC------------A-C--ATGA--TGT--GC-
* **
12996180 AATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTG
229 ----------GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
* *
12996245 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAACT
284 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
12996310 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGA
349 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
12996375 ATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGACTACCAAGTTTGGGGCCAAAACT-CC
414 ATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCC
* * * * * * *
12996439 TTCCAAAAAAATTTAAAAAATCTCGGACCGGAAAAAGTTTCGAAAATCATGAAAAATTGAAAACG
479 TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
12996504 AGTCGTCGTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATA
544 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** * * *
12996569 AAAATATCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGCTCCA
609 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * ** * * *
12996634 CGGCTTAG-GCATCCCGTTTCTTTGGCCGGCGTAGT-GCCTG-CCTACCACCCACCCGCTCGTTT
674 CGGCTT-GCGCATCCCGTCTCTCTGGCCGGC-TAGTGGTC-GCCCGCCCGCCCGCCTGCTCGTTT
* * * * *
12996696 CGTC-GTTGGCTTAGGCATATGAAATTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCG
736 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCG
* * * * * * ** * *
12996760 GCAACAGGATTGACAGCATGCAAAGGGGGATTCGA-CTAATCCCCGACTTGCGCATCCCGCCCCT
801 GCAGCAGGATCGGCAGCACGCAGAGGAGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCT
** * *
12996824 CTGGCCCACCGAGCACCCGCACGCTC
865 CTGGCCGGCTGAGCGCCCGCACGCTC
** *
12996850 GTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCTCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-A-T-TCA
* * * * * *
12996915 GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATCCTGGGCTTGGGCATGTGCTGGTGCC
63 ATCT-AGAT-----C--ACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
* ** * ** *
12996980 ACATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCGTTGGAGAACCTGACCGGTGGCATTGGG
120 GCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
12997045 GTTCCGACGATCGGGAGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
185 GTTCCGACGATCGGG-GGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
12997110 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCTCACCCCCTTAAAGTGCATTT
247 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
* * *
12997175 GAGATTTTACGGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAAT
312 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
12997240 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGT-TTTTTATGCACGCCAACAAAAATA
377 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TATTTTTGTGCATGCCAACAAAAATA
* * * * * *
12997304 GAAGGATCACGTCTACCAAATTTGAGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAA
441 CAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAAAATCCCGAA
** ** * *
12997369 CCGTAAAAAGTTTTGAAAATTGTGAACAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
506 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* **
12997434 AAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
571 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * * *
12997499 AAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTTTCTGGTC
636 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* ** * * * * * * * *
12997564 GACGTAGTGCCCGCTCGCCCACCCACCCGCTTGTTTCGTCGGTTAGCTTCGGCATACGTAGTTCA
701 GGC-TAGTGGTCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** * * ** * * * *
12997629 TTCCCAGTCTAAGATTGGATCAGATTGAGGGTTGCGACAACAGGATCGGCAGCACGTAGAGGGGG
765 TTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGAGG
** ** * * * * **
12997694 ACCCGGCCGATCCTAGGCTTGCACATCCCGCCCCTCTGGTCGGTTGAGCACATGCACGCTC
830 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
12997755 GTTTCGTGGGTTGACTGAGGCATATGGAGTTCATTCCCAGTATAAG-AT-C--AG--A--C---C
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTATTCAATC
* * * * ** *
12997809 --G--GACCGAGGGTTCCGGCAGCACATGTTGGGCTCAAGCATGTGTTGGTG-CTGCATTTTTCT
66 TAGATCACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC-GCATTTTTCT
** * * * *
12997869 TCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
130 TCACCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * ** *
12997934 TCGGGGGGGTCGGGGGGTATGTACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG
195 TC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
12997999 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCAG
259 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
12998064 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGCCACAAAATC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
12998129 TTGTACACTTCAATTTTTTAGCTGAAT-TTATTTGTGCATGCCAAAAAAAATACAAAGATCACGT
389 TTGTACACTTCGAGTTTTTAGCTGAATATT-TTTGTGCATGCCAACAAAAATACAAGGATCATGT
* **
12998193 CTACCAAGTTTGGGGACAAAACT-CCTTAC-AGAAAAATTTTAAAAAATCCCGAACCACAAAAAG
453 CTACCAAGTTTGGGGCCAAAACTCCCTT-CGA-AAAAATTTTAAAAAATCCCGAACCGTAAAAAG
*
12998256 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCGATGAAACTTCACGTGAAGGCTTAAG
516 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
12998321 GGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACGTATAAATATGAAGATG-ACC
581 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
*
12998385 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC-A-TAGT
646 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCTAGTGGT
* * * * *
12998448 -GCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTCGGCATACGGAGTTCATTCCCAGTCTA
711 CGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTA
* * * * * * **
12998512 AGATCGGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGTACTCAGAGGGGGACCCGGCCGAT
776 AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGAGGACCCGATCGAT
* * * *
12998577 CCCCGGCTTGCACAT-CCGCCCCTCTGGCCGACTGAGCACACGCACGCTC
841 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
12998626 GTTTCGTGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-ATT--CA
* * * * * * *
12998691 GTCTAAGATCGGACCGGATTGAGGGTTTCGATAGCAAATGCTAGGCTCGGGCATGTGTTGGTGCC
63 ATCT-AGATC--ACC-----GAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
* * * * * * * * *
12998756 ACATTTTTCTTCGCCGGGGCTCCATCGTCAGAGCATCACCGGAGAGCCTGACCAGCGGCATTGGG
120 GCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* * * *
12998821 GTTCCGGCGATCAGGGGGTCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
185 GTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
12998886 CTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCATTTGAG
250 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
12998951 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-GTCTGAAATGGGGACACTTTTTTCAAATGGC
315 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
12999015 CACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
380 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAG
* * * * * * *
12999080 GATCATGTCTACTAAGTTTGCGGCCAAAACTCCATAC-AAAAAATTTTTTAAAAATCCTGAACCA
445 GATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAA-TTTTAAAAAATCCCGAACCG
** *
12999144 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
509 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * **
12999209 GCTTAAGGGACCACTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAG
574 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
12999274 ATGGGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGGC
639 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
12999339 -A-TAGT-GCCCGCCTGCCCACCCGCTCGTTTCGTCGGTTGGCTTCA-GCATACGGAGTTCATTC
704 TAGTGGTCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTT-AGGCATACGGAGTTCATTC
* * ** *
12999400 CTAA-TCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCACCAGCACGCAGAGGGGGAC
768 C-AAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGAGGAC
* * * * * * *
12999464 CCGGGT-GATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTCAGCACACTCACGCTC
832 CC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
12999523 GTTTCGTGGATTGA--TCGGCATACGGAGTTCATTCCCAGTCTACGCATACGAAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-ATT--CA
* ** * * * *
12999586 GTCTAAGATCGGACCGGATCGAGGGTTGTGACCGCACATGCTAGGATCGGGCATGTGCTGGTGCC
63 ATCT-AGATC--A-C----CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
* ** * ** * * * * *
12999651 GTATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCACTGGAGAACCTGACTGACGACATTGGG
120 GCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
*
12999716 GTTCCGACGATCGGGGGGGCCAGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTG
185 GTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
12999781 GCCCTTATATTGGGCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTT
247 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
*
12999846 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAAT
312 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * * *
12999911 GGCCACAAAATCTTGTACACTTCGATTTTTTAGGTGAATGTTTTTGTGCACGCCAACAAAAATAC
377 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATAC
* ** * *
12999976 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTT-AAAAATCTCGAAT
442 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAAAATCCCGAAC
* * * *
13000040 CTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCCTACCATGAAACTTCACGTGA
507 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
13000105 AAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
572 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
*
13000170 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCG
637 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* ** * * * *
13000235 ACGTAGTGCCCGTCCGCCCGCCCGCCCT-TTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCA
702 GC-TAGTGGTCGCCCGCCCGCCCG-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
13000299 TTCCCAA-TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCAGCAGCACGC-GTAGGG
765 TT-CCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG-AGGA
* * * * ** *
13000362 GGACCC-AGTTGATCCCCAGCTTGCGCATACCGCCCCTCTGGTCGGCTGAGCGCCCATACACTC
828 GGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * *
13000425 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAG-ATA-GGACTGGA-CCAAG
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT-TATTCAA-
** * * * * * * ** * *
13000487 GGTTGCAGCAGC-A-GGAT-CGACAGCACGCATAG-GGGGACTCGGCCTAT-CCCAGGCT-TGCA
64 TCTAG-ATCACCGAGGGTTACGACAGCA--CAT-GCTGGG-CTCGGGC-ATGTGCTGG-TGT-CG
*** * * ** * ** *** *
13000546 CATCCCGCCCTCTGGCCGACTGACCGC-CCACACGCTC-GTTCATTC-CCAGTCTAAGCAT-A-C
121 CAT----TTTTCT--TC-AC-CAGGGCACCA-TCGC-CGGAGCA-TCGCC-GGAGAA-CCTGACC
** * *** * * * ** * ***** * * * *
13000606 GAAGTTCATTCCCAG-T-CTAAGATTGGACCAGACCGAACATTGCGGCAGCACATGCTGGGCTCA
173 GGCG-GCATT-GGGGTTCCGACGATCGG--GGGGCCGGGGGGTG-TGC-GCACATGATGTGC-GA
* * * * * * * * * *
13000669 -GGCATGTGCTGGTGC--CGCACTTTTCTT---CACCGAGGCACCATCATCGGAGCATCGTCGAA
231 TGG---GTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-TC-CC-TCATC--A--AACCTC-AA
*** ** ** * **** **
13000728 GAAC-CTA-A-CTGGTGGTATTG-GGGTTCCGATGATCGGGGGGCCGGAGGGGTGAGC-GCACTT
285 GAACTC-ACACCCCCT--TAAAGAGCATT-TGA-GAT----TTTAC--A--GGTTTGCTGC-C--
* **** * * ** * **
13000788 GATGT-GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
334 -A-GTAGCCATTAAAG-T-GT-C-T-G-----AAATGGGGACACT-T---TTTTCAAA--T-G-G
**** ** * * * *
13000852 AACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
379 ---TCACAAAATCTTGTACA-C-TTCGAG--TTT-----TTAGCTG--A--A--TATT----T-T
***** ** * * * *** **
13000917 CTGAAATGGGGACACTTTTTTCAAATGGTCACAA-AATCTTGTAC-ACTTCAGGTTTTTAGCTGA
421 -TG---T---G-CA-TGCCAACAAA-AAT-ACAAGGATCATGT-CTAC--CAAGTTTGGGGCCAA
** *** * ** * ** *** *
13000980 ATTTTTTTGTGCATGGCAACAAAAATACAAGGATCATATCTAAGTTTCG-AGCCAAAACTCCTTC
472 AACTCCCT-T-C---G-AA-AAAATTTTAA--A--AAATC-CCGAACCGTA---AAAAGT--TT-
* * * * * *
13001044 CGAAAAAATTTAAAAAAATCCAAAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACCAG
519 C------------AAAAAT-C---A-TG-AAAAA---TAGAAAA---CG---AGTCG----TC--
*
13001109 TTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
551 TTGC-----CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
13001174 AATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACG
611 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
** * *
13001239 GCTTGCTAAT-CCGTCTCTCTGGCCGGC--GTAGT-GCCCGCCCG--C-CC-GCTCGTTTCATCG
676 GCTTGCGCATCCCGTCTCTCTGGCCGGCTAGTGGTCGCCCGCCCGCCCGCCTGCTCGTTTCGTCG
* * * * * *
13001296 GTAGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATCCGACCGGACCGAGGGTTGCGCCAAC
741 GTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* ** ** * * * *
13001361 AGGATTGATAGCACATAGAGG-GTGACCCGACCTATCCCCGGCTTACGCATCCCACCCCTCTGGC
806 AGGATCGGCAGCACGCAGAGGAG-GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
13001425 TGGCTGAGCACCCGCACGCTC
870 CGGCTGAGCGCCCGCACGCTC
* * * *
13001446 GTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAACATACGGAGCTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-TTATT--CA
* * * * * * **
13001511 GTCCAAGATCGGATTGGACCGAGGGTTACGGCAACACATACTGGGCTCGGGCATGTGTTGG-CAC
63 AT-CTAGATC-------ACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
** * * * *** * *
13001575 TGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATAATCGGAGAACCTGACCGACGGCATTTG
120 -GCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
** * * *
13001640 GGTTCCGGTGATCGGGGGTCCGGGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACATGGC
184 GGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
13001705 CCTTATATTGGCCCCGTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
249 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
13001770 -AATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATTGGGG-CACTTTTTTCAAATG
314 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATG
13001833 GTCACAAAATCTTGTACACTTC-AGGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATAC
378 GTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATAC
** * *
13001896 AA-GATCACATCTACCAAGTTTGGGGCCAAAACT-CCATCTGAAAAAATTTTAAAAAATCTCGAA
442 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTTC-GAAAAAATTTTAAAAAATCCCGAA
* * * * *
13001959 CCGTAAAAGGTTTCAAATATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTCCACGTG
506 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
13002024 AAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCACACAGAAATATG
571 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* *
13002089 AAGATGTGCCTAAACCTACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
636 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * ** * *
13002154 GACGTGGTGCCCGCCCGCCCGCGCGCCTACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
701 GGC-TAGTGGTCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** * * * * * *
13002219 TTCCAAGTCTAAGATCGGATTGGATCAAGGTTTGTGGCAACAGGATCGGCAGCACACAGAGG-GT
765 TTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGAG-
* * *
13002283 GACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAACAG-CCGCACGCTC
829 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTC
*
13002345 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT-ATT--CA
* * * * * *
13002410 GTCTAAGATCGGACCGGACCAAGGGTTGCGGCCA-CTCATGCTGGGCTCGGGCATGTGTTGGTGC
63 ATCT-AGATC--ACC-G----AGGGTTAC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
* * *
13002474 CGCATTTTTCTTCATC-GAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTG
119 CGCATTTTTCTTCACCAG-GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * *
13002538 GGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACGTGATTTGCGATGGGTGCTGGTACTT-
183 GGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
13002602 GCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
247 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
* * *
13002667 GAGATTTTACAAGTTTACTGCAAGTAGCCATTAAAGTCG-CTGAAATGGGGACACTTTTTTCAAA
312 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GTCTGAAATGGGGACACTTTTTTCAAA
*
13002731 TGGTCAGAAAA
376 TGGTCACAAAA
13002742 AGTTTCAAAA
Statistics
Matches: 13665, Mismatches: 2126, Indels: 1690
0.78 0.12 0.10
Matches are distributed among these distances:
819 2 0.00
820 2 0.00
822 5 0.00
823 32 0.00
824 3 0.00
827 3 0.00
829 3 0.00
830 3 0.00
831 1 0.00
832 3 0.00
833 7 0.00
834 3 0.00
835 2 0.00
836 3 0.00
837 17 0.00
838 4 0.00
839 6 0.00
840 10 0.00
842 1 0.00
843 4 0.00
844 7 0.00
845 7 0.00
847 1 0.00
848 4 0.00
849 2 0.00
850 1 0.00
852 1 0.00
853 7 0.00
856 10 0.00
857 15 0.00
858 9 0.00
859 20 0.00
860 4 0.00
861 7 0.00
862 6 0.00
863 27 0.00
864 10 0.00
865 2 0.00
866 7 0.00
867 784 0.06
868 74 0.01
869 7 0.00
870 220 0.02
871 329 0.02
872 138 0.01
873 10 0.00
874 124 0.01
875 19 0.00
876 426 0.03
877 651 0.05
878 291 0.02
879 607 0.04
880 12 0.00
881 7 0.00
882 3 0.00
883 3 0.00
884 10 0.00
885 21 0.00
886 7 0.00
887 9 0.00
888 14 0.00
889 200 0.01
890 458 0.03
891 457 0.03
892 27 0.00
893 190 0.01
894 28 0.00
895 447 0.03
896 476 0.03
897 186 0.01
898 350 0.03
899 536 0.04
900 389 0.03
901 265 0.02
902 1031 0.08
903 638 0.05
904 620 0.05
905 274 0.02
906 153 0.01
907 302 0.02
908 50 0.00
909 365 0.03
910 24 0.00
911 17 0.00
912 14 0.00
913 19 0.00
914 6 0.00
915 30 0.00
916 8 0.00
917 19 0.00
918 140 0.01
919 7 0.00
920 10 0.00
921 18 0.00
922 6 0.00
923 5 0.00
924 12 0.00
925 6 0.00
926 2 0.00
927 5 0.00
928 36 0.00
929 7 0.00
930 312 0.02
931 42 0.00
932 27 0.00
933 11 0.00
934 26 0.00
935 17 0.00
936 441 0.03
937 2 0.00
938 8 0.00
939 5 0.00
940 1 0.00
941 1 0.00
942 12 0.00
943 13 0.00
944 5 0.00
945 16 0.00
946 11 0.00
947 13 0.00
948 22 0.00
949 10 0.00
950 6 0.00
951 22 0.00
952 1 0.00
953 11 0.00
954 21 0.00
955 1 0.00
956 2 0.00
957 8 0.00
958 5 0.00
959 7 0.00
961 5 0.00
962 10 0.00
963 12 0.00
964 6 0.00
966 2 0.00
967 2 0.00
968 4 0.00
969 2 0.00
970 11 0.00
971 6 0.00
972 8 0.00
973 9 0.00
974 17 0.00
975 7 0.00
976 5 0.00
977 3 0.00
978 2 0.00
979 12 0.00
980 2 0.00
981 5 0.00
982 2 0.00
983 4 0.00
984 30 0.00
985 2 0.00
986 11 0.00
987 3 0.00
989 6 0.00
990 5 0.00
991 5 0.00
992 1 0.00
995 1 0.00
996 1 0.00
998 2 0.00
999 3 0.00
1000 6 0.00
1003 6 0.00
1004 8 0.00
1005 2 0.00
1007 1 0.00
1008 1 0.00
1009 1 0.00
1010 5 0.00
1011 1 0.00
1013 17 0.00
1014 9 0.00
1015 2 0.00
1016 12 0.00
1018 14 0.00
1019 17 0.00
1020 7 0.00
1021 177 0.01
1022 16 0.00
1023 23 0.00
1024 162 0.01
1025 133 0.01
1026 125 0.01
1027 116 0.01
1028 68 0.00
1029 83 0.01
1030 226 0.02
1031 208 0.02
1032 174 0.01
1033 77 0.01
1034 107 0.01
1035 135 0.01
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (890 bp):
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTATTCAATC
TAGATCACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTT
CACCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTA
CCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCTAGTGGTCGCCC
GCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATC
AGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGAGGACCCGATCGATCCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
Found at i:12987073 original size:26 final size:26
Alignment explanation
Indices: 12987037--12987089 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12987027 GTTGACTTAG
*
12987037 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
12987063 GCATATGGAGTTGATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
12987089 G
1 G
12987090 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:12989024 original size:867 final size:865
Alignment explanation
Indices: 12987063--13000472 Score: 11327
Period size: 867 Copynumber: 15.0 Consensus size: 865
12987053 CCCAGTCTAA
* * * * * * ** * **
12987063 GCATATGGAGTTGATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCACAGGCTTTG
1 GCATACGGAGTTCAGTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGGG
*
12987128 CTCGGGCATGTGCTGGTGCTGCATTTTT-TT--TACAGGGGCACCATCA-CCGGAGCATCGTCGG
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGT-C-GGGGCACCAT-AGCCGGAGCATCGCCGG
* * * *
12987189 AGAACCTGACCGGCGACATTTGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCGCACATCATG
128 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
12987253 TGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
12987318 ACACCTCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
12987383 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT-AATTGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
12987447 TGTGCATGCCAAAAAAAACACAAGGATCATGTCTACCAAGTTTGTGGCCAAAACTCCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCTCG-AA
* * *
12987512 AAAATTTTAAAAACTCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCAT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
12987577 CTTCCCATGAATCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
12987642 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACCT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
12987707 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTTTGTTTCGTCGGTTGGCTTAGG
647 GCGCATCCCGTATCTCTGGCCGGCGTAGTG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * ** * * * *
12987772 CATACGGAGTTCATTCCCAATCTAAAATCAGGCCGGAAGGAGGGTTCCGGCAGGAGGATCGGTAG
708 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAG
* * * * * *
12987837 CACGTAGAGTGGGACCCGATCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
773 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
12987902 TGCACGCTCGTTTCATGGGTTGACTTAG
838 CGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
12987930 GCAAACAGAGTTCATTCCCAGTCTAAGATCAGA-CTAGACCGAGGGTTACGATAGTACATGCTGG
1 GCATACGGAGTTCAGTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTACGACAGCACATGCTGG
* * * * *
12987994 GCTCGGGCATGTGTTGGTG-TCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGA
65 GCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCGTCGGGGCACCATAGCCGGAGCATCGCCGGA
* *
12988058 GAACCTGACAGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATG
*
12988123 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
12988188 ACACCTCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
12988253 ATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
12988318 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCGAAACTCCTCCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCTCGAAA
* * * *
12988383 AAATTTTAAAAAATTCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAACAAAAAATGAGTCGT
453 AAATTTTAAAAAA-TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
12988448 CTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
12988513 GCATTGGCATGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* **
12988578 GTGCATCCCGTATCTCTGATCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
647 GCGCATCCCGTATCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * * * * *
12988643 CAAAGTTCATTCCTAGTCTAAGATCGGACCGGGCCAAGGGTTGTGGCAGCAGGATCGGCAACACG
712 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACG
* * * * * *
12988708 CAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTTTAGCCGGCTGAGCACCCGCA
777 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
12988773 CACTCATTTCGTGGGTTGACTTAG
842 CGCTCGTTTCGTGGGTTGACTTAG
* * *
12988797 GAATACGGAGTTCAGTCTCAGTCCAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCAGTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGGG
* * ** *
12988862 CTAGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATATTCGGATCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATAGCCGGAGCATCGCCGGAGA
* * * * * *
12988927 ACCTGACTGACAGCATTGGGGTTCCGATGATCAGGTGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
12988992 TGATGGGTGCCGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTAGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12989057 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
12989122 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTACCTGAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
12989187 TGCATGCCAACAAAAAAACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTCTTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCTCGAAAAA
* * * * ** * *
12989252 ATTTTAAAAAAATCTCAAACTGTAAAAAGTTTCAAAAGTTGTGAAAAATAAAAAACGAGTCGTTT
455 ATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
12989317 TGCTATGAACCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
12989382 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** **
12989447 GCATCCCGTCTATCTGGCTGGTGTACTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGG
649 GCATCCCG--TATCT--C---TG----GCCGGCGTA-GTGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
12989512 CTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGTAGCAGGAT
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGAT
* * *
12989577 CGGCAGCACGCAGAGAGGGACCCGGA-CGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCT
767 CGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
12989641 GAGCACCCACACGCTCATTTCGTGGGTTGACTTAG
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
12989676 GCATACGGAGTTCAGTCCCAGTCTAAGATCGGATCAGACCGAGGGTTAC-AGCAGCACATGCTGG
1 GCATACGGAGTTCAGTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGA-CAGCACATGCTGG
* * ** ** * * *
12989740 GCTTGGGCATGTGCTGATGCCACATTTTTCTTCACCGGCGCACCATCA-CCGGATCATCACCGGA
65 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAT-AGCCGGAGCATCGCCGGA
* * *
12989804 GAACCTGAACGGCGGCATTGAGGTTCCGACGATCAGAGGGGCC-GGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
12989868 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
12989933 ACGCCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
12989998 ATGGGGACACTTTTTCCATATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
12990063 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCTCGAAA
* * *
12990128 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
12990193 TTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12990258 CATTGCCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATC-GCTT
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTT
* * * * *
12990322 GCACATCCTGTCTCTCTGGCAGGCAAAGTGGCCGCCCGCTCGCCCGCCCGCCCGCCCGGTCGCTC
647 GCGCATCCCGTATCTCTGGC---C------G--G--CG-T----AG--TGCCCG-CC---CGCTC
* * * * *
12990387 GTTTCGTCAGTTAGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATTAGACCGGACTGAGGGT
688 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
* * * * ** ** * * * *
12990452 TACGGCAGCAAGATTGGCAGCACATAGAGGAAGACCCGATCGATCCTCGGCTTTCGCATACCGCC
753 TGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * * * *
12990517 ACTCTAGCTGGCTGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAG
818 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
12990565 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTG-CC-A--GTCTAAGATC-GGAT
1 GCATACGGAGTTCAGTCCCAGTCTAAG-AT-CGGA--TCA--GACCGAGGGT-TACGA-CAGCA-
* * * ** ** *** * * **
12990625 CA-GACCGAGGGTTGTGACAGCACATGCCAGT-CTAAG-ATCGGATCGAATCG-AGGGTTGCGGC
57 CATG-CTG-GGCTCG-G---GCATGTGCTGGTGCT--GCAT-TTTTC--TTCGTCGGG--GCACC
* * * * * * * ** * * **
12990686 A-A-CAGGATTGGCAGCGTGCAGAGGGGGACCCGACCGATCCCTGGC-TTGTGCATCCCGCCCCT
109 ATAGCCGGA---GCATC--GC--CGGAGAACCTGACCG---GC-GGCATTG-GGGTTCCGACGAT
** ** * * ** ** * * * * * *
12990748 CTGGCCGGTTGAGCGCCTGCACGCTCATTTCG-TGGTTGACTAAGGGATAC-GG-AGTTGATTCC
162 C-GGGGGGCCGGGGGGGTGTGCGCACA--T-GAT-G-TG-CGATGGG-TGCTGGTACTTG--GCC
* * **** * ** **** ***
12990810 CAGTCTAAGCATACGGAGTTC-ATTCC-CAGTCTAAGA-CT-G-G-AC-CGGATCGAGTGTTGCG
217 C--T-T-A-TAT-TGGCCCCCTATCCCTCA-TC-AA-ACCTCGAGAACTCACA-C-CCCCTTAAA
** ** *** * ** * * *** * *
12990868 GCAGCACATGCTAGGCT-C-GGTCATG-TGCTGGT-GCCA-T-AATTTTCTTCGACGGGG-CACC
271 G-AGCATTTGAGATTTTACAGGT-TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* ** * * * * * * * * * *****
12990926 ATCGTCAGA-GCATCATCAGAGAACCTAATCGGTGAC-GTTGGGGTTCTGACGATCGGAGGGGCC
334 TTTTTCAAATG-GTCA-CA-A-AATCT--T--GT-ACACTTCGAGTTTTTA-G--CTGA-ATTTT
*** * ** * ** * * * * * ** **
12990989 GGGGGGTGTGCGC-ACATGATGTGCGATGGGTGC-TGGTACTTGGCCCTTA-TATTGGCCCCCTA
386 TTTGTGCATGC-CAACA-AAAATAC-AAGGAT-CAT-GT-C-T--ACC-AAGT-TTGGGGCCAAA
* ** * * *
12991051 TC-CCTCATC--AAAAA---TACAAGGATCACGTCTACCGAGTTTGCGACCAAAACTCCTTCCAA
440 ACTCCTC-TCGAAAAAATTTTA-AAAAATCCCG--AACC--G--T---A--AAAAGT--TT-C--
** * **** *** * *** *
12991110 AAAAATTTTAAAAAATCCCGAACTGTAAAAAGT-TT--C--GAAA-ATCA--TGAAAAATAGAAA
487 AAAAATCATGAAAAATAGAAAAC-G--AGTCGTCTTGCCATGAAACTTCACGTGAAGGCT---TA
* * * * * * * * ** *
12991167 ACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGC
546 A-GGGAC--CATTG-TATG-AA-TTTAC---AAGCCATAA---A--AATG---GCATTGGCACG-
* * * ** *** *** **** * * *
12991231 CATAAAAATGGAA-TTGGCATGCAGAAATATAAAGATGTGCCTA--AACCCAC--C-TAC-CA-C
593 CAGAAATAT-GAAGAT-G--TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * ** * * * * * *
12991288 CC-TATCGT-T-CCACGGC-TTGCGCATACG-GAGTTC-ATTC-CCAG-T--C-TAAG-AT-CGA
654 CCGTATC-TCTGGC-CGGCGTAGTGC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* ** * ** * * ** *
12991340 ACTGGA--CCGAGGGT-TGCGGTAGCAGGATCGGCAGCACGTAGAGG--G-GG-A-CCCGA-CTG
715 AGTTCATTCCCA--GTCT-AAG-ATCA-GACCGG-A-C-CG-AG-GGTTGCGGTAGCAGGATCGG
* * * ** * * ** * * * ** * * **
12991396 -ATC-CCCGGCTTGCGCATCCCG-CCCCTCTGGCCAGC-TGAGCA-CCCGCACGTTTTTTTTGTG
770 CAGCACGCAG-AGGGGGA-CCCGACCGATC--CCCGGCTTGCGCATCCCGC-C---CCTCTGGCC
* **** ** * ***** * *
12991456 GGTTGA-CTTAGGCATACG-AAG-TTCATTCCCAGTC-TAA
827 GGCTGAGCGCCCGC--ACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
12991493 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CGAGCGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCAGTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGGG
* * * *
12991557 CTCGGGCATGTGTTGGTGCCT-TATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCG--GAGA
66 CTCGGGCATGTGCTGGTG-CTGCATTTTTCTTCGTCGGGGCACCATAGCCGGAGCATCGCCG-GA
* *
12991619 GAACCTGACCGGCGGCATTGGCGTTCC-AGCGATC-----G--AGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
12991676 TGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * **
12991741 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGATTGCTGCCAGTAGCCATTAAAGTGTCTGGT
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
12991806 ATCGAGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATGTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
12991871 TGTG-ATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGGCAAAAATCCT-TCCAAA
388 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCTCGAAA
* * * *
12991934 AAATTTTTAAAAAATCTCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
453 AAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
12991999 CTTGCCATGAAACTTCACGTCAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
12992064 GCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
12992129 GCGCATCCCGTATCTCTAGCCGGCGTAGCGCCCGCCCGCCCATCTGCTCGTTTCATCGATTGGCT
647 GCGCATCCCGTATCTCTGGCCGGCGTA--G--TGCCCG-CC--C-GCTCGTTTCGTCGGTTGGCT
* * * * *
12992194 TAGGCATACGGAGCTCATTCCCAGTCTAAGAT-TGAATC-AAGCTGAGGGTTGC-G-AGCGTAGG
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA-CCGAGGGTTGCGGTAGC--AGG
* * * ** * * * *
12992255 ATTGGTAGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGTAACCCACCCCTCTGGCCGGC
765 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
12992320 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
830 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
12992356 GCTTACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAAC
1 GCATACGGAGTTCAGTCCCAG--T---C-T---AAG---A-T--C-G-----GATC--A--G-AC
** * * * **
12992421 CGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTTAGGG
40 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
* * * *
12992486 CACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGCGTTCC-AGCGAT-------
105 CACCATAGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGG
* * *
12992543 -CGGGGGGGTGTGCGCACATGATATGCGATGGGTGCCGGTACTTGGCCATTATATTGGCCCCCTA
169 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
12992607 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGATTGCTG
234 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
12992672 CCAGTAGCCATTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
12992737 TTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGT
364 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
* * * * * **
12992802 TTGGGGCAAAAACTCCTTTCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATC
429 TTGGGGCCAAAACTCCTCTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
*
12992867 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
494 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
12992932 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
559 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
12992997 A-CACCTTATCGATCCACGGCTT-CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCG
624 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTGGCCGGCGTAGT--------G--C-
*
12993060 TCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCAG
678 -CCG--C-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * *
12993125 ACCAGACCGAGGGTTGTGGTAGGAAGATCGACAGCACGTAGAGGGGG-CCTCGACCGATCCCCGG
739 ACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACC-CGACCGATCCCCGG
* * * * * * * *
12993189 CTTGTGCATCCCGCCCCTCTGGCTGGCAT-ACGTATGCTCGTTTCACGGGTTGACTTAGGCATAC
803 CTTGCGCATCCCGCCCCTCTGGCCGGC-TGA-G--CGCCCG---CAC-GCTCG--TT--TCGT--
* *
12993253 GGAGTTCATTCCCAGTCTAA
854 GG-GTTGA----C--T-TAG
* * * * *
12993273 GCATATGGAGTTGATTCCCCGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCAGTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGGG
* * *
12993338 CTCGGGCATGTGTTGGTG-TCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCGTCGGGGCACCATAGCCGGAGCATCGCCGGAG
* * ***
12993402 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGAGATGTGCATGCATGAT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG-G-TGTGCGCACATGAT
*
12993467 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * *
12993532 CACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCCGG
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
12993597 AATGAGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
12993662 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGA
387 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCT-CGA
* * *
12993726 AAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
12993791 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
12993856 GGCATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCC--T--ATCC-C-G--
581 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
12993913 T---C-T--C---T-T-TGGCTGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAG
646 TGCGCATCCCGTATCTCTGGCCGGCGTAGT----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * ** *
12993967 GCATACGGAGTTCATTCCCAGTGTAAGATCGGATCAGACTGAGGGTTGCTGCAATAGGATCAGCA
707 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * * * *
12994032 ACACACGGAGGAGGACCC-AGCCGATCCTCGACTTGCGTATCCCGCCCTTCTGGCCGGCTGAGTG
772 GCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
12994096 TCCGTACGCTCGTTCCGTGGGTTGACTTAG
836 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
12994126 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCAGATTGGAG
1 GCATACGGAGTTCAGTCCCAGTCTAAG-AT-CG--G---------A-TC--AGA-C---------
* * * ** * * *
12994191 CAAGGGTTGC-AGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTTGCCGAG
40 CGAGGGTTACGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGG
* * * * * * * *
12994255 GCACCATCGTCGGAGCATTGCCAGAGAACCTGACCGACGACATTGGGGTTCTGGCGATCGGGGGG
104 GCACCATAGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
* * * *
12994320 GCC-GGGGGGTGTGCGCAGATGTTGTGTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCT
168 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
12994384 ATCCCTCATCAAACCTTGAGAACTCACACCACCTGAAAGAGCATTTGAGATTTTACAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
12994449 GCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
12994514 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGTCAAAAAAAATACAAGGATCACGTCTACCAAG
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
12994579 TTTGGGGCCAAAACTCCT-TCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
428 TTTGGGGCCAAAACTCCTCTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * *
12994643 TCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTAACGTGAAGGCCTAAGGGACCATTG
492 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
12994708 TATGAATTTACAAGCCATAAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCA
557 TATGAATTTACAAGCCAT-AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
12994773 CCTACCACCCTATCGATCCACAGCTTGCGCATCCCTTCTCTCTGGTCGGCATAGTGCTCGCCCGC
621 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTGGCCGGCGTA--G-T-------
* * * *
12994838 CCGCCCGCCCGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAGGATTAG
676 --GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** * * * ** *
12994903 ACTAGACCGAGGGTTACGGTAGTAGGATTGGCAGCACATAGAGGGGGACCCGATCGATCCCCGGC
739 ACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * * *
12994968 TTGCACATCTCGCCCCTCTGGCTGGCTGAGCGCCCGCACGTTCGATTCGTGGGTTGACTTAG
804 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
12995030 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
1 GCATAC-G-G---------AG--T-----T-C--AG-----TCCCAGTCTAAGATCGGATCAGAC
* * * * * *
12995095 CGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGTTGGTG-TCACATTTTTCTTTGTCAGG
40 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCGTCGGG
* * ** *
12995159 GCACCATCGTCGGAGCATCGCTAGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGAGGGG
104 GCACCATAGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGG
*
12995224 GCCGGGTGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
168 GCC-GG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
12995289 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
231 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
**
12995354 CTATCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
296 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
12995419 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
361 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
*
12995484 AGTTTGGGGCCAAAAATCCT-TCCG-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
426 AGTTTGGGGCCAAAACTCCTCT-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* * *
12995547 AATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCAT
490 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * * *
12995612 TGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGAAAAAATATGAAGATGAGCCAAAACCC
555 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * * *
12995677 ACCTACCACCCTATCGATCCACGGCTTGCACATCCCTTCTCTCTGGCCGGCATAGTGCTCGCCCG
620 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTGGCCGGCGTA--G-T------
* * * * *
12995742 CCCGCCCGCCCGCCCGCTCGTTTCGTAGGTTGGCTTAGGCATATGGAGCTCATTTCTAGTCTAAG
676 -------GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * * * ***
12995807 ATCAGACTAGACTGAGGGTTGCAGTAGTATGATTGGCTGCACGTAGAGGGGGACCCGGTAGATCC
734 ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * * * *
12995872 CCGGCTTGCGCATCCCGCCCTTCTGGCCGGTTGAGCGCCCGCACGTTCGTTTTGTGGGTTGACTC
799 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
12995937 AG
864 AG
* *
12995939 GAATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGAACCGGAC
1 GCATACGGAGTTCAGTCCCAGTCT----A-----AG---A-T--C-G-----GATC--A---GAC
** * * *
12996004 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
40 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
* * * **
12996069 CACCATCGCCGGAGCATCGTCGGAGAACCTGGCCAACGGCATTGGGGTTCCGGCGATCGGATGGG
105 CACCATAGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT-C--CGA-C-GAT---
* * *
12996134 CCGGGGGGTGTGCGCAAATGATGTGTGAGCAAATGATGTGTGAGCAAATGATGTGTGATGGGTGC
162 -C--GGGG-G-GC-C----G--G-G-G-G-----G--GTGTGCGCACATGATGTGCGATGGGTGC
* *
12996199 TGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
205 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
12996264 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAACTGTCTGAAATGGGGACACTT
270 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
12996329 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCAAGCCAA
335 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
12996394 CAAAAATACAAGGATCATGACTACCAAGTTTGGGGCCAAAACTCCT-TCCAAAAAAATTTAAAAA
400 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCTCGAAAAAATTTTAAAAA
* * * * * * *
12996458 ATCTCGGACCGGAAAAAGTTTCGAAAATCATGAAAAATTGAAAACGAGTCGTCGTGCCATAAAAC
465 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* ** * *
12996523 TTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATATCATTGGCATGTA
530 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
12996588 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGCTCCACGGCTTAG-GCATCCCGTT
595 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-GCGCATCCCGTA
* * *
12996652 TCTTTGGCCGGCGTAGTGCCTGCCTACCACCCACCCGCTCGTTTCGTC-GTTGGCTTAGGCATAT
659 TCTCTGGCCGGCGTA--G--TG-------CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * *
12996716 GAAATTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGGATTGACAGCATGC
713 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGC
* ** ** * ** * *
12996781 AAAGGGGGATTCGACTAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCCACCGAGCACCCGCAC
778 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
**
12996846 GCTCGTTTAATGGGTTGACTTAG
843 GCTCGTTTCGTGGGTTGACTTAG
*
12996869 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCAGTCCCAG--T---C-T--A-AG---A---TC-G-----GATC--A---GAC
* * * * ** *
12996934 CGAGGGTTGCGGCAGCACATCCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGG
40 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
** *
12996999 CACCATCA-CCGGAGCATCGTTGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGAGG
105 CACCAT-AGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GG
12997063 GCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
168 GCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
12997128 TATCCCTCATCAAACCTCGAGAACTCTCACCCCCTTAAAGTGCATTTGAGATTTTACGGGTTTGC
232 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
12997193 TGCGAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTAC
297 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * * *
12997258 ACTTTGAGTTTTTAGCTGAAGTTTTTTATGCACGCCAACAAAAATAGAAGGATCACGTCTACCAA
362 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
* * * * **
12997323 ATTTGAGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
427 GTTTGGGGCCAAAACTCCTCTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
** * * *
12997388 TTGTGAACAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTG
492 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** *
12997453 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCGAAACCCAC
557 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
12997518 CTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTTTCTGGTCGACGTAGTGCCCGCTCGCC
622 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTGGCCGGCGTAGTG--C-C-CG--
* * * * **
12997583 CACCCACCCGCTTGTTTCGTCGGTTAGCTTCGGCATACGTAGTTCATTCCCAGTCTAAGATTGGA
681 ------CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * ** ** * * * **
12997648 TCAGATTGAGGGTTGCGACAACAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCTAGGCT
740 CCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * * ** *
12997713 TGCACATCCCGCCCCTCTGGTCGGTTGAGCACATGCACGCTCGTTTCGTGGGTTGACTGAG
805 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * * *
12997774 GCATATGGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAGGGTTCCGGCAGCACATGTTGGG
1 GCATACGGAGTTCAGTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGGG
** * *
12997839 CTCAAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCA-CCGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAT-AGCCGGAGCATCGCCGGAG
* * * **
12997903 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGTATGTACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
12997967 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
12998032 CACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAT
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
12998097 TGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTATTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
12998162 GTGCATGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGACAAAACTCCT-TAC-AGA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCT-CGA-A
**
12998225 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
12998290 CTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
12998355 GCATTGGCACGTATAAATATGAAGATG-ACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
12998419 GCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCT
647 GCGCATCCCGTATCTCTGGCCGGC---GT---AG--TGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
12998484 TCGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAGGATCG
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG
* * * * *
12998549 GCAGTACTCAGAGGGGGACCCGGCCGATCCCCGGCTTGCACAT-CCGCCCCTCTGGCCGACTGAG
769 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
12998613 CACACGCACGCTCGTTTCGTGGGTTGACTGAG
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
12998645 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGAT
1 GCATACGGAGTTCAGTCCCAGTCTAAG-AT-CG--G---------A-TC----A---GACC----
* * * * * ** *
12998710 TGAGGGTTTCGATAGCAAATGCTAGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGG
41 -GAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
* * * * * * * * * *
12998775 CTCCATCGTCAGAGCATCACCGGAGAGCCTGACCAGCGGCATTGGGGTTCCGGCGATCAGGGGGT
105 CACCATAGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC
* *
12998840 C-GGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTAT
170 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
12998904 CCCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
12998969 CAGTAGCCATTAAAG-GTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
12999033 TCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACTAAGTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
* * * * * **
12999098 TGCGGCCAAAACTCCAT-AC-AAAAAATTTTTTAAAAATCCTGAACCATAAAAAGTTTTGAAAAT
430 TGGGGCCAAAACTCC-TCTCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
12999161 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGT
493 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ** *
12999226 ATGAATTCACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGGGCCTAAACCCACC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
12999291 TACCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGGCATAGTGCCCGCCTGCCC
623 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTGGCCGGCGTAGTG--C-CC-G---
* * *
12999356 ACCCGCTCGTTTCGTCGGTTGGCTTCA-GCATACGGAGTTCATTCCTAATCTAAGATCAGACTGG
681 -CCCGCTCGTTTCGTCGGTTGGCTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * ** *** * *
12999420 ACCGAGGGTTGCAGCAGCAGGATCACCAGCACGCAGAGGGGGACCCGGGTGATCCCCGACTTGCA
744 ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * *
12999485 CATCCCGCCCCTCTGGCCGGCTCAGCACACTCACGCTCGTTTCGTGGATTGATCGGCATACGGAG
809 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG---G-T-----T---GA-
12999550 TTCATTCCCAG
861 --C-TT---AG
* * * * * ** *
12999561 TCTACGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGACCGCACATG
1 -----GCATACGGAGTTCAGTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATG
* * * * * ** * *
12999626 CTAGGATCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCACT
61 CTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATAGCCGGAGCATCGCC
* * * *
12999691 GGAGAACCTGACTGACGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGGTGTGTGCACAT
126 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGGTGTGCGCACAT
* *
12999756 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCGTATCCCTCATCAAACCTCGAGA
189 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
12999821 ACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
254 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * * *
12999886 TGAAATGGGGACACTTTTTTCGAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGGTGAATG
319 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
12999951 TTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTC
384 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCTC
* * * *
13000016 GAAAAAATTTT-AAAAATCTCGAATCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGT
449 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * * *
13000080 CGTCCTACCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
13000145 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
579 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
13000210 CTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCGCCCTTTCGTTTCGTCA
644 CTTGCGCATCCCGTATCTCTGGCCGGCGTA------GT--GCCCGCCCG--C--TCGTTTCGTCG
* * * * *
13000275 GTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGC
697 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGC
* ** * *
13000340 AGGATCAGCAGCACGC-GTAGGGGGACCC-AGTTGATCCCCAGCTTGCGCATACCGCCCCTCTGG
762 AGGATCGGCAGCACGCAG-AGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* ** * *
13000403 TCGGCTGAGCGCCCATACACTCGTTTCGTGGGTTGGCTTAG
825 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
13000444 GCATACGGAGTTTATTCCCAGTCTAAGAT
1 GCATACGGAGTTCAGTCCCAGTCTAAGAT
13000473 AGGACTGGAC
Statistics
Matches: 10356, Mismatches: 1509, Indels: 1345
0.78 0.11 0.10
Matches are distributed among these distances:
841 11 0.00
843 9 0.00
844 8 0.00
845 8 0.00
846 2 0.00
847 2 0.00
848 7 0.00
849 9 0.00
850 3 0.00
852 3 0.00
853 33 0.00
854 6 0.00
855 2 0.00
856 8 0.00
857 8 0.00
858 10 0.00
859 22 0.00
860 15 0.00
861 22 0.00
862 16 0.00
863 36 0.00
864 21 0.00
865 22 0.00
866 9 0.00
867 824 0.08
868 83 0.01
869 12 0.00
870 223 0.02
871 343 0.03
872 128 0.01
873 8 0.00
874 122 0.01
875 17 0.00
876 427 0.04
877 632 0.06
878 313 0.03
879 554 0.05
880 11 0.00
881 12 0.00
882 3 0.00
883 16 0.00
884 26 0.00
885 37 0.00
886 16 0.00
887 14 0.00
888 18 0.00
889 203 0.02
890 332 0.03
891 381 0.04
892 29 0.00
893 17 0.00
894 18 0.00
895 376 0.04
896 464 0.04
897 154 0.01
898 354 0.03
899 142 0.01
900 25 0.00
901 10 0.00
902 813 0.08
903 211 0.02
904 310 0.03
905 262 0.03
906 125 0.01
907 278 0.03
908 16 0.00
909 288 0.03
910 10 0.00
911 16 0.00
912 15 0.00
913 7 0.00
914 13 0.00
915 8 0.00
916 18 0.00
917 42 0.00
918 30 0.00
919 11 0.00
920 17 0.00
921 42 0.00
922 19 0.00
923 24 0.00
924 28 0.00
925 14 0.00
926 25 0.00
927 25 0.00
928 52 0.01
929 19 0.00
930 310 0.03
931 27 0.00
932 15 0.00
933 6 0.00
934 14 0.00
935 8 0.00
936 467 0.05
937 6 0.00
939 3 0.00
941 1 0.00
943 11 0.00
945 6 0.00
946 7 0.00
947 4 0.00
948 20 0.00
949 5 0.00
950 4 0.00
951 7 0.00
954 7 0.00
955 1 0.00
957 2 0.00
958 4 0.00
959 6 0.00
960 2 0.00
961 2 0.00
962 8 0.00
963 9 0.00
964 8 0.00
966 12 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (865 bp):
GCATACGGAGTTCAGTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATAGCCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCTCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTATCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGA
GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAG
Found at i:12990594 original size:26 final size:26
Alignment explanation
Indices: 12990565--12990617 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12990555 GTTGACTTAG
12990565 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
12990591 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12990617 G
1 G
12990618 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12990824 original size:26 final size:26
Alignment explanation
Indices: 12990794--12990844 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12990784 TGACTAAGGG
*
12990794 ATACGGAGTTGATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
12990820 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12990845 ACTGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:12992395 original size:26 final size:26
Alignment explanation
Indices: 12992359--12992408 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12992349 GACTTAGGCT
*
12992359 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
12992385 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
12992409 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:12993276 original size:26 final size:26
Alignment explanation
Indices: 12993247--12993299 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12993237 GTTGACTTAG
12993247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
12993273 GCATATGGAGTTGATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12993299 G
1 G
12993300 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12994155 original size:26 final size:26
Alignment explanation
Indices: 12994126--12994178 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12994116 GTTGACTTAG
*
12994126 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12994152 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12994178 G
1 G
12994179 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12995066 original size:26 final size:26
Alignment explanation
Indices: 12995030--12995082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12995020 GTTGACTTAG
*
12995030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12995056 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12995082 G
1 G
12995083 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12996165 original size:15 final size:15
Alignment explanation
Indices: 12996141--12996191 Score: 93
Period size: 15 Copynumber: 3.4 Consensus size: 15
12996131 GGGCCGGGGG
*
12996141 GTGTGCGCAAATGAT
1 GTGTGAGCAAATGAT
12996156 GTGTGAGCAAATGAT
1 GTGTGAGCAAATGAT
12996171 GTGTGAGCAAATGAT
1 GTGTGAGCAAATGAT
12996186 GTGTGA
1 GTGTGA
12996192 TGGGTGCTGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.35, T:0.27
Consensus pattern (15 bp):
GTGTGAGCAAATGAT
Found at i:12996905 original size:26 final size:26
Alignment explanation
Indices: 12996869--12996921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12996859 GTTGACTTAG
*
12996869 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12996895 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12996921 G
1 G
12996922 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12998682 original size:26 final size:26
Alignment explanation
Indices: 12998645--12998697 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12998635 GTTGACTGAG
*
12998645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12998671 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12998697 G
1 G
12998698 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12999131 original size:896 final size:893
Alignment explanation
Indices: 12997782--13000470 Score: 4080
Period size: 895 Copynumber: 3.0 Consensus size: 893
12997772 AGGCATATGG
* * * * * * * **
12997782 AGTTCATTCCCAGTATAAGATCAGACCGGACCGAGGGTTCCGGCAGCACATGTTGGGCTCAAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTTCGACAGCACATGCTAGGCTCGGGCA
* * *
12997847 TGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACC
66 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GCAGAGCATCACCGGAGAACCTGACC
* *
12997912 GACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTATGTACACATGATGTGCAATGGGTG
130 GACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTATGTGCACATGATGTGCGATGGGTG
12997977 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
195 CTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
12998042 AAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
12998107 TTTTTCAAATGGCCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTATTTGTGCATGCCA
324 TTTTTCAAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
12998172 AAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTACAGAAAAATTTTAAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACA-AAAAATTTT-AAA
* *
12998237 AATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCGATGAAA
452 AATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
12998302 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACGT
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACGT
* *
12998367 ATAAATATGAAGATGACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
582 AGAAATATGAAGATGGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
12998432 CTCTGGCCGGCATAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTCGGCATACGGAG
647 CTCTGGCCGGCATAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTCGGCATACGGAG
* * * *
12998497 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGTACTCAGAG
712 TTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAGGATCAGCAGCACGCAGAG
* * *
12998562 GGGGACCCGGCCGATCCCCGGCTTGCACAT-CCGCCCCTCTGGCCGACTGAGCACACGCACGCTC
777 GGGGACCCGGCTGATCCCCGGCTTGCACATACCGCCCCTCTGGCCGGCTGAGCACACACACGCTC
12998626 GTTTCGTGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
842 GTTTCGTGGGTTGACT-AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * *
12998679 AGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTTCGATAGCAAATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTTCGACAGCACATGCTAGGCTCGGGCA
* * * *
12998744 TGTGTTGGTGCCACATTTTTCTTCGCCGGGGCTCCATCGTCAGAGCATCACCGGAGAGCCTGACC
66 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CAGAGCATCACCGGAGAACCTGACC
* * *
12998809 -AGCGGCATTGGGGTTCCGGCGATC-AGGGGGTCGGGGGGTATGCGCACATGATGTGCGATGGGT
130 GA-CGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTATGTGCACATGATGTGCGATGGGT
*
12998872 GCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCGCCTT
194 GCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
12998937 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-GTCTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
12999001 TTTTTTCAAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCC
323 TTTTTTCAAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
12999066 AACAAAAATACAAGGATCATGTCTACTAAGTTTGCGGCCAAAACTCCATACAAAAAATTTTTTAA
388 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACAAAAAA--TTTTAA
* ** *
12999131 AAATCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
451 AAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
12999196 ACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACA
516 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACG
* *
12999261 TAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCAT
581 TAGAAATATGAAGAT-GGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
12999326 CTCTCTGGCCGGCATAGTGCCCGCCTGCCCACCCGCTCGTTTCGTCGGTTGGCTTCAGCATACGG
645 CTCTCTGGCCGGCATAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTCGGCATACGG
* * ** *
12999391 AGTTCATTCCTAATCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCACCAGCACGCAG
710 AGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAGGATCAGCAGCACGCAG
* * * * *
12999456 AGGGGGACCCGGGTGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTCAGCACACTCACGC
775 AGGGGGACCCGGCTGATCCCCGGCTTGCACATACCGCCCCTCTGGCCGGCTGAGCACACACACGC
* * *
12999521 TCGTTTCGTGGATTGA-TCGGCATACGGAGTTCATTCCCAGTCTACGCATACGA
840 TCGTTTCGTGGGTTGACTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* *
12999574 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGT-GACCGCACATGCTAGGATCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTT-TCGACAGCACATGCTAGGCTCGGGC
* * *
12999638 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCACTGGAGAACCTGAC
65 ATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-AGAGCATCACCGGAGAACCTGAC
* * * *
12999703 TGACGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGGTGTGTGCACATGATGTGCGATGG
129 CGACGGCATTGGGGTTCCGACGATCGGGGGGGTC--GGGGGGTATGTGCACATGATGTGCGATGG
*
12999768 GTGCTGGTACTTGGCCCTTATATTGGGCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCC
192 GTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
12999833 TTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
256 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
12999898 ACTTTTTTCGAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGGTGAATGTTTTTGTGCACG
321 ACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATG
* *
12999963 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTA
386 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTAC-AAAAAATTTTA
* * * * * *
13000028 AAAATCTCGAATCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCCTACCATGA
450 AAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
13000093 AACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCAC
515 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCAC
* *
13000158 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCG
580 GTAGAAATATGAAGATG-GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
13000223 TCTCTCTGGCCGACGTAGTGCCCGTCC-GCCCGCCCGCCCTTTCGTTTCGTCAGTTGGCTTAGGC
644 TCTCTCTGGCCGGCATAGTGCCCG-CCTGCCCGCCCG--C--TCGTTTCGTCAGTTGGCTTCGGC
* *
13000287 ATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCAGCAGC
704 ATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAGGATCAGCAGC
* * * * * * *
13000352 ACGC-GTAGGGGGACCCAGTTGATCCCCAGCTTGCGCATACCGCCCCTCTGGTCGGCTGAGCGCC
769 ACGCAG-AGGGGGACCCGGCTGATCCCCGGCTTGCACATACCGCCCCTCTGGCCGGCTGAGCACA
* * * *
13000416 CATACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAG
833 CACACGCTCGTTTCGTGGGTTGAC-TAGGCATACGGAGTTCATTCCCAGTCTAAG
13000471 ATAGGACTGG
Statistics
Matches: 1618, Mismatches: 149, Indels: 43
0.89 0.08 0.02
Matches are distributed among these distances:
894 6 0.00
895 431 0.27
896 349 0.22
897 176 0.11
898 344 0.21
899 129 0.08
900 7 0.00
901 1 0.00
902 148 0.09
904 27 0.02
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (893 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTTCGACAGCACATGCTAGGCTCGGGCA
TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCAGAGCATCACCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTATGTGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACAAAAAATTTTAAAAATC
CCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACGTAGAA
ATATGAAGATGGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGCATAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTCGGCATACGGAGTTCA
TTCCCAATCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGG
ACCCGGCTGATCCCCGGCTTGCACATACCGCCCCTCTGGCCGGCTGAGCACACACACGCTCGTTT
CGTGGGTTGACTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
Found at i:12999577 original size:26 final size:26
Alignment explanation
Indices: 12999540--12999590 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12999530 GGATTGATCG
*
12999540 GCATACGGAGTTCATTCCCAGTCTAC
1 GCATACGAAGTTCATTCCCAGTCTAC
12999566 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
12999591 AGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAC
Found at i:13000543 original size:159 final size:158
Alignment explanation
Indices: 13000264--13000585 Score: 398
Period size: 159 Copynumber: 2.0 Consensus size: 158
13000254 GCCCGCCCTT
* *
13000264 TCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGG
1 TCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATAGGACCGGACCAAGG
** * * *
13000329 GTTGTGGCAGCAGGATCAGCAGCACGCGTAGGGGGACCCAGTTGATCCCCAGCTTGCGCATACCG
66 GTTGCAGCAGCAGGATCAGCAGCACGCATAGGGGGACCCAGCTGATCCCCAGCTTGCACATACCG
* * * *
13000394 CCCCTCTGGTCGGCTGAGCGCCCATACAC
131 -CCCTCTGGCCGACTGACCGCCCACACAC
** * * * *
13000423 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATAGGACTGGACCAAGG
1 TCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATAGGACCGGACCAAGG
* * *
13000488 GTTGCAGCAGCAGGATC-GACAGCACGCATAGGGGGACTCGGCCT-AT-CCCAGGCTTGCACATC
66 GTTGCAGCAGCAGGATCAG-CAGCACGCATAGGGGGACCCAG-CTGATCCCCA-GCTTGCACATA
*
13000550 CCGCCCTCTGGCCGACTGACCGCCCACACGC
128 CCGCCCTCTGGCCGACTGACCGCCCACACAC
13000581 TCGTT
1 TCGTT
13000586 CATTCCCAGT
Statistics
Matches: 139, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
158 33 0.24
159 105 0.76
160 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (158 bp):
TCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATAGGACCGGACCAAGG
GTTGCAGCAGCAGGATCAGCAGCACGCATAGGGGGACCCAGCTGATCCCCAGCTTGCACATACCG
CCCTCTGGCCGACTGACCGCCCACACAC
Found at i:13002401 original size:26 final size:26
Alignment explanation
Indices: 13002364--13002416 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13002354 GTTGACTTAG
13002364 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
13002390 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13002416 G
1 G
13002417 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13002527 original size:899 final size:888
Alignment explanation
Indices: 13000583--13002741 Score: 3062
Period size: 899 Copynumber: 2.4 Consensus size: 888
13000573 CCACACGCTC
* * * **
13000583 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAA-CATT
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-AAGGGTT
* * * *
13000647 GCGG-CAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCACTTTTCTTCACCGAGGCACCATC
65 GCGGCCA-CACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATC
* * * * * * *
13000711 ATCGGAGCATCGTCGAAGAACCTAACTGGTGGTATTGGGGTTCCGATGATCGGGGGGCCGGAGGG
129 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGTCCGG-GGG
* * *
13000776 GTGAGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
193 GTGTGCGCACATGTTGTGCGATGGGTGCTGGTAC-TGGCCCTTATATTGG-CCCCTATCCCTCAT
*
13000841 CAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
256 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
13000906 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAGGTT
321 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAGGTT
* *
13000971 TTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCATATCTAAGTTTCGAGCCAAA
386 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAAGTTTCGAGCCAAA
* * * *
13001036 ACTCCTTCCGAAAAAATTTAAAAAAATCCAAAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAG
451 ACTCCATCCGAAAAAATTTAAAAAAATCCAAAACCGCAAAAAGGTTTCAAAATCGTGAAAAATAG
* *
13001101 AAAACCAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
516 AAAACCAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* ** *
13001166 GCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATC
581 ACCATAAAAATGGCATTCGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
13001231 GATCCACGGCTTGCTAATCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCG
646 AATCCACGGCTTGCGAATCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCG
* *
13001296 GTAGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATCCGACCGGACCGAGGGTTGCGCCAAC
711 GTAGGCTTAGGCATACGGAGTTCAATCCAAGTCTAAGATCCGACCGGACCAAGGGTTGCGCCAAC
* * * * *
13001361 AGGATTGATAGCACATAGAGGGTGACCCGACCTATCCCCGGCTTACGCATCCCACCCCTCTGGCT
776 AGGATCGACAGCACACAGAGGGTGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCA
*
13001426 GGCTGAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGAA
841 GGCTGAACACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGAA
* * * ** * *
13001474 GTTCATTCCCAGTCTAAACATACGGAGCTCATTCCCAGTCCAAGATCGGATTGGACCGAGGGTTA
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTG
* * ** * * *
13001539 CGGCAACACATACTGGGCTCGGGCATGTGTTGGCACTGCATTTTTCTTCGTCGGGGCACCATCGT
66 CGGCCACACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGT
* ** * * *
13001604 CGAAGCATAATCGGAGAACCTGACCGACGGCATTTGGGTTCCGGTGATCGGGGGTCCGGGGGGTG
131 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGTCCGGGGGGTG
*
13001669 TGCGCACATGTTGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCGTATCTCTCATCAA
196 TGCGCACATGTTGTGCGATGGGTGCTGGTAC-TGGCCCTTATATTGGCCCC-TATCCCTCATCAA
*
13001734 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA-AATTTACAGGTTTGCTGCCAGTAGCCAT
259 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
13001798 TAAAGTGTTTGAAATTGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAGGTTTT
324 TAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAGGTTTT
* *
13001862 TAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAA-GATCACATCTACCAAGTTTGGGGCCAA
388 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT---AAGTTTCGAGCCAA
* * * *
13001925 AACTCCATCTGAAAAAATTTTAAAAAATCTC-GAACCG-TAAAAGGTTTCAAATATCGTGAAAAA
450 AACTCCATCCGAAAAAATTTAAAAAAATC-CAAAACCGCAAAAAGGTTTCAAA-ATCGTGAAAAA
**
13001988 TAGAAAATGAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
513 TAGAAAACCAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
13002053 CAAACCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCT
578 CAAACCATAAAAATGGCATTCGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
13002118 ATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTGGTGCCCGCCCGCCCGCGCGCCTA
643 ATCAATCCACGGCTTGCGAAT-CCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-C-CG----
* * * * ** *
13002183 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGATTGGATCAAG
699 CTCGTTTCATCGGTAGGCTTAGGCATACGGAGTTCAATCCAAGTCTAAGATCCGACCGGACCAAG
* * * * ** *
13002248 GTTTGTGGCAACAGGATCGGCAGCACACAGAGGGTGACCCGGTCGATCCCCGGCTTGCGCATCCC
764 GGTTGCGCCAACAGGATCGACAGCACACAGAGGGTGACCCGACCGATCCCCGGCTTACGCATCCC
* * *
13002313 GCCCCTCTGGCAGGCTGAACAGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
829 ACCCCTCTGGCAGGCTGAACACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGAA
13002373 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTG
1 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTG
*
13002438 CGGCCACTCATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGT
66 CGGCCACACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGT
*
13002503 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGT-CGGGGGG
131 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATC--GGGGGTCCGGGGGG
* *
13002567 TGTGCGCACGTGATT-TGCGATGGGTGCTGGTACTTGCCCTTATATTGGCCTCCTATCCCTCATC
194 TGTGCGCACATG-TTGTGCGATGGGTGCTGGTACTGGCCCTTATATTGGCC-CCTATCCCTCATC
* * * *
13002631 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCAAGTAGCC
257 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
13002696 ATTAAAGTCG-CTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAA
322 ATTAAAGT-GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
13002742 AGTTTCAAAA
Statistics
Matches: 1115, Mismatches: 128, Indels: 41
0.87 0.10 0.03
Matches are distributed among these distances:
887 9 0.01
888 27 0.02
889 107 0.10
890 293 0.26
891 179 0.16
892 1 0.00
893 1 0.00
894 1 0.00
895 2 0.00
899 390 0.35
900 96 0.09
901 9 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTG
CGGCCACACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGT
CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGTCCGGGGGGTG
TGCGCACATGTTGTGCGATGGGTGCTGGTACTGGCCCTTATATTGGCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAGGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAAGTTTCGAGCCAAAACTCC
ATCCGAAAAAATTTAAAAAAATCCAAAACCGCAAAAAGGTTTCAAAATCGTGAAAAATAGAAAAC
CAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCAT
AAAAATGGCATTCGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCC
ACGGCTTGCGAATCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTAGG
CTTAGGCATACGGAGTTCAATCCAAGTCTAAGATCCGACCGGACCAAGGGTTGCGCCAACAGGAT
CGACAGCACACAGAGGGTGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCAGGCTG
AACACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGAA
Found at i:13004012 original size:26 final size:26
Alignment explanation
Indices: 13003982--13004034 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13003972 GTTGACTTAG
**
13003982 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13004008 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13004034 G
1 G
13004035 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13004856 original size:26 final size:26
Alignment explanation
Indices: 13004820--13004872 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13004810 GTTGACTTAG
13004820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13004846 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13004872 G
1 G
13004873 ATCAGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13005753 original size:26 final size:26
Alignment explanation
Indices: 13005723--13005775 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13005713 GTTGACTTAG
13005723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13005749 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13005775 G
1 G
13005776 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13006865 original size:906 final size:903
Alignment explanation
Indices: 13004629--13010642 Score: 7792
Period size: 879 Copynumber: 6.7 Consensus size: 903
13004619 CTAAACCCAT
* * *
13004629 CGCCCGTCCGGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
** * * * * *
13004694 CCAGACCGAGGGTTGTGGCAGCAAGATCAGCAGCACACAGAGGGGGACCCGATCGATCC-CTGAC
66 CCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTC-GGC
* * * * * * *
13004758 TTACGCATCCCACCCCTTTGGCTGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
13004823 TACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGA
** * * * *
13004888 GGG-TAGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCA-CATTTTTCTTCGTCGGGGC
260 GGGTTA-CGACAGCACATGCTGGGCTCGGGCATGTGTTGGTG-CAGTATTTTTCTTCGCCGGGGC
* *
13004951 ACCATTGTCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGGGC
323 ACCATCGTTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGGGC
* *
13005016 CGGGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
388 C-GGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * **
13005081 CCCTCATCAAATCTC-ATGAACTCACACCGCCTTAATGAGCATTTGAGATTTTACACATTTGCTG
452 CCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
13005145 TCAGTAGCCATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
516 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
13005210 TTC-AGGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAA-GATCATGTCTACCAAG
581 TTCGA-GTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
13005273 TTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAGGTTTCGAAAAT
645 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
* *
13005338 CGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
710 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
13005403 ATGAATTTACAAGCCATAAAAATGGCATTGGCAAACAGAAATATAAAGATGTGCCTAAACCCACC
775 ATGAATTTACAAACCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * *
13005468 TACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGTCCGCC
840 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCC
* * * * * * * **
13005532 CACCCGCCCGCTCGTTCCATCGGTTGTCTTAGGCATACGGAGTTCATTTCTAGTCTAAGATTGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
** * * * *
13005597 CCAGACTAAGGGTTTA-GGTAGCAGGAT-GAGCAGCACGTAGAGGGGGACCCGGTGGATCCCCGG
66 CCAGACCGAGGG-TTACGGTAGCAGGATCG-GCAGCACGCAGAGGGGGACCCGATCGATCCTCGG
* * * **
13005660 CTTGCGCATCCCACCCCTCTAGCTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* *
13005725 ATACGGAGTTCATTCCCAGTCTAAGCATACGGATTTCATTCCCAGTCTAAGATCGGATCAGACTG
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
** * * * *
13005790 AGGGTTGTGACTGCACATGCTGGGCTCGGGCATGTGCTAGTGTCA-TATTTTTCTTCGTCGGGGC
259 AGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTG-CAGTATTTTTCTTCGCCGGGGC
* * * ** * * *
13005854 ACCATCGTTTGAGCATCGCCAGAGAACCTGATTGGTGGCATTTGGGTTTCGACGATC-GGGGGGC
323 ACCATCGTTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGGGC
* * *
13005918 CGGGGGGGTGTGCGCAGATGA-AGTGTGATGGGTG-TGGTACTTGGCCCTTATATTGGCCTCCTA
388 C-GGGGGGTGTGCGCACATGATA-TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * * *
13005981 TCCCTTATCAAACCTTGAGAACTCACACCCTCGTAAAAAGCATTTGAGATTTTACAGGTTTGCTG
451 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
13006046 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACAC
516 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
13006111 TTCGAGTTTGTAGCTAAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCATGT
581 TTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
13006176 TTGGGGCCAAAACGCCTTCCAAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTTAAAAAT
646 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAAT
* * *
13006240 CGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
710 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
13006305 GTGAATTTACAAACCATAAAAATGGCATTGGCACACAGAAATATGAAGATATGCCTAAACCCACC
775 ATGAATTTACAAACCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * * *
13006370 TACCACCCTATCAATCCACGACTTGCGCATCCCATCTTTCTAGCCGGCATGGTGCTCGGCCGACC
840 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGACC
13006435 GCC
901 GCC
* * *
13006438 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAGGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* * * * * * * *
13006503 CCGGACCGAGGGTTACGGCAGCAGGATCGGTAGCACGTAGAGCGAGACCCGACCGATCCTCGACT
66 CCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTCGGCT
* *
13006568 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCCTGGGTCGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
* * ** * **
13006633 ACGAAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCATAGTCTAGGATCAAATCAGACCGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAG
* *
13006698 GGTTACGACAGCACATGCTAGGCTCGGGCATGTGTTGGT-CAGTATTTTTCTTCACCGGGGCACC
261 GGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCAGTATTTTTCTTCGCCGGGGCACC
* * * *
13006762 ATCGTTGGAGCATCATCGGAGAACTTGACCGGTGGCAATGGGGTTCCGGTGATCGGGGGGGCCGG
326 ATCGTTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGGGCCGG
* *
13006827 GGGGTGAGCGCACATGATATGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
391 GGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
13006892 CATCAAACCTCAAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAAT
456 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
13006957 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTTGA
521 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
13007022 GTTTTTAGCTAAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGA
586 GTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
13007087 GCCAAAACACCTTCCAAAAAAATTTTAAAAAATC-CTTAACCGTAAAAAGTTTCAAAAATCATGA
651 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGA
13007151 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
715 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
13007216 TTTAAAAATCATAAAAATGCCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCA
780 TTTACAAACCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
13007281 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-ACCCGCC
845 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGA-CCGCC
* * * *
13007340 CACTCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* * ** * * *
13007405 CTAGATCGAGGGTTACGACAGCAGGATCGACAGCACGCAGAGGGGGACCCAACCGATCC-CTGGC
66 CCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTC-GGC
* * * * *
13007469 TTGCGCATCCCG-CCCTTTCGGCCGGCTGAGCACCCGCACACTTGTTTCATGGTTTGACTTATGC
130 TTGCGCATCCCGCCCCTCT-GGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * *
13007533 ATATGGAGTTCATTCCCTGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACC
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACC
* * *
13007597 GAGGGTTACGGCAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGCCGGGGC
258 GAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCAGTATTTTTCTTCGCCGGGGC
* * * *** * * *
13007662 ACCATCGTCGGAGCATCATTGGAGAACCTGACCGACAGCATTGAGGTTTCGATGAT-GGAGGGG-
323 ACCATCGTTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGGGC
*
13007725 C---GGG-G-G-G----TG---TGC--T--G-GC----ACTTGGCCCTTATATTGGCCCTCTATC
388 CGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
13007768 CCTCATCAAACCTCCAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
453 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
13007833 AGTAGCCATTAAAGTGTCTTG-AATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
518 AGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
13007897 TCAAATTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTT
582 TCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* **
13007962 TGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGT-AAAAGTTTCAAAAATCA
647 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
*
13008026 TGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTA
712 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTA
* * *
13008091 TGAATTTACAAGCCATAAAAATGGCATTGGCAAATAGAAATATGAAGATGTGCCTAAACCCACCT
776 TGAATTTACAAACCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
13008156 ACGACCCTATCGATCCACGGCATGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCTCG-CGCGCC
841 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGAC-CGCC
* * * *
13008219 CGCCCTCCTGCCCGCTCATTTCGTCAGTTGGCGTAGGCATACAGAGTTCATTCCCAATCTAAGAT
1 CG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
* * * * *
13008284 CAGACCAGACCGAGGGTTATGATAGCATGATCGGCAGCATGCAGAGGGGGACCCAATCGATCCTC
62 CAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTC
* * * * *
13008349 GACTTGCGCACCCCGCCCCTCTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
127 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
13008414 GCATACGGAGTTCATTCCCAG--T---C-TA--G-G---------A-TC--AGA-C----CAGAC
192 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
** * * * *
13008453 CGAGGGTTGTGACAGCACATGCTTGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
257 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCAGTATTTTTCTTCGCCGGGG
* * * * * *
13008518 CACCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTGACAATGGGGTTCCGGTGATCTGGGGGT
322 CACCATCGTTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGGG
* *
13008583 CCGGGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
387 CCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
13008648 CCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
452 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
13008712 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
517 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
13008777 TCAAATTTTTAGCTGAATTTTTTTTTTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGT
582 TCGAGTTTTTAGCT-AAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
13008842 TTGGGGCCAAAACTCCTTCCAAAAATATTGTAAAAAATCTCGTACCGTAAAAAGTTTCAAAAATC
646 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
* *
13008907 ATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGT
711 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGT
* ** *
13008972 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACC
775 ATGAATTTACAAACCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * *
13009037 TACGACCCTATCGATCCACGGCGTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCCG-CTCGC
840 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCCGAC-CGC
13009101 C
903 C
* * * **
13009102 C-TCCGCCCGCTCGTTTCGTCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* * * *
13009166 CCAGATCGAGGGTTGCGGTAGCAGGATCAGCAGCATC-CAGAGGGGGACCCGATCGCTCCTCGGC
66 CCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCA-CGCAGAGGGGGACCCGATCGATCCTCGGC
* * * * * *
13009230 TTACGCACCCCACCCCTCTGGCCAGCAGAGTACCCGCACGCTCGTTTCATGGGTTTGACTTAGGC
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGG-TTGACTTAGGC
* *
13009295 ATAAGGAGTTCATTCCCAGTCT-AGGAT-C--AG---A----C---C---GA----AT-----CG
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
* * * *
13009334 AGGGTTGCGATAGCACATGCTAGGCTCGGGCATGTGTTGGTGCAGTATTTTTCTTCACCGGGGCA
259 AGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCAGTATTTTTCTTCGCCGGGGCA
* * * * **
13009399 CCATCGCTGGAGCATCGTCGGAGAACTTGACCGGTGGCAATGGGGTTCGGGCGATCGGGGGGGCC
324 CCATCGTTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGGGCC
* * * *
13009464 AGGGGGTGAGCGCACATGATATGCGATGAGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCC
389 GGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
13009529 CTCATCAAACCTCAAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCA
454 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
13009594 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
519 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
13009659 GAGTTTTTAGCTAAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTG
584 GAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
13009724 GAGCCAAAACACCTTTCGAAAAAATTTTAAAAAATC-CTTAACCGTAAAAAGTTTCAAAAATCAT
649 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCAT
13009788 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
713 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
13009853 AATTTAAAAATCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTAC
778 AATTTACAAACCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
13009918 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-ACCCGCC
843 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGA-CCGCC
* *
13009979 CGCTCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* * * * * * *
13010044 CCAGATCAAGGGTTACGATAGCAGGATCGGCAGCATGCAGAGGGGGACCCAACCGATCCCCGGCT
66 CCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTCGGCT
* * * * *
13010109 TGCGCATCCGGCCCCT-TCGGCCGGCTGAGCACCCGCACACTTGTTTCATGGTTTGACTTATGCA
131 TGCGCATCCCGCCCCTCT-GGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* * * * * *
13010173 TATGGAGTTCATTCCCTGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGA
** * * * * * * *
13010238 GGGTTACGGTAGCACATGCTGGGCTCAGGTATTTGCTGGTGCCGTATTTTTCTTCACTGGGGCAC
260 GGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCAGTATTTTTCTTCGCCGGGGCAC
** * * ** * * * **
13010303 CATCGCCGGAGCGTCGTCAGAGAACCTGACCGACGGCATTGGGGTTCTGACGATTGGGGGCACCG
325 CATCGTTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGGGCCG
* * * * * *
13010368 AGGGGGTGTGCGCACATGATGTGCAATGGTTGCTGGTGCTTGGCCCTTATATTGGTCGCCTATCC
390 -GGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
13010433 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTACCA
454 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
13010498 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
519 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
13010563 GACTTTTTAGCTAAATTTTATTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
584 GAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
13010628 GGGCCAAAACTCCTT
649 GGGCCAAAACTCCTT
13010643 TCGAAAATAC
Statistics
Matches: 4496, Mismatches: 505, Indels: 219
0.86 0.10 0.04
Matches are distributed among these distances:
857 108 0.02
858 5 0.00
859 1 0.00
861 1 0.00
862 6 0.00
863 1 0.00
864 3 0.00
865 2 0.00
869 2 0.00
872 3 0.00
874 2 0.00
875 1 0.00
876 1 0.00
877 43 0.01
878 499 0.11
879 753 0.17
880 229 0.05
881 143 0.03
882 195 0.04
883 185 0.04
884 11 0.00
886 1 0.00
888 4 0.00
891 3 0.00
894 2 0.00
895 1 0.00
896 1 0.00
897 1 0.00
898 4 0.00
901 196 0.04
902 539 0.12
903 495 0.11
904 260 0.06
905 92 0.02
906 702 0.16
907 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (903 bp):
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
CCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTCGGCT
TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAG
GGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCAGTATTTTTCTTCGCCGGGGCACC
ATCGTTGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGGGGGGGCCGG
GGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAACCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCC
Found at i:13013384 original size:868 final size:868
Alignment explanation
Indices: 13010905--13016259 Score: 6423
Period size: 868 Copynumber: 6.1 Consensus size: 868
13010895 AGTAGCACGC
** *
13010905 AGGTTTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
13010970 CGCACACCCCC-GACCACCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATG
66 CGCACACCCCCTG-GC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATG
* * * ** *
13011034 CTCTGACGATGGTACCCTGACGAAGAAAAATACGGCACCAGCACATGCTTGATCCCAGCATGTGC
129 CTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
13011099 TACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
194 TGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
** * * * * * * * **
13011164 ATTAAACAAGCGTGCGGGTGCTGAACCGGCCAGAGGGGC-GCAAAGCGAAAGTCGGGGATCGGTC
259 ACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG-GATGCGCAAGCCGGGGATCGACC
* * * * * * * * *
13011228 GGGTCCCCCTCTACGTGCTGTCAATCCTGCTGCCTCAACCCTCGATCCGATATGATCTTAGACTG
323 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
*
13011293 GGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGG-GCGGGCGGGCACTACGAT-GG
388 GGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGAGCGGGCGGGCACTACG-TCGG
* * * * *
13011356 CTAGAAAAACGGGAT-AGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCA
452 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
13011420 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTGAAGCCTTCA
517 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCA
* *
13011485 CGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACAGTT
581 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* * **
13011550 C-GAAATTTTTTAAAATTTTTTTGGAAA-GAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTG
646 CAG-GATTTTTTAAAATTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
* * * *
13011613 TATTTTTTGTTGACATGCACAATAAAATTCAGCTAAAAACTCAAAGTGTATAAGATTTTGTGACC
710 TA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
13011678 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
774 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
13011743 AAATGCTCTTTAAGGGGGTGTGAGTTCTCG
839 AAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
13011773 AGGTTTGATGAGGGATAGGCGGCCAATATAAGGGCCAAGCACCAGCAACCATTGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
13011838 CGCACACCCCCTTCCCCCAGCCCCCGATCGTCGGAACCCCTATGCCGCCGGTTAAGTTCTCCGGT
66 CGCACACCCCC-T-----GGCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT
** * * *
13011903 GATAATCCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGTACATGCTCGAGCCCAGCAT
125 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* ** * * * * * * *
13011968 GTACTGTAGCAACCTTTGGACTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCA
190 GTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * ** * *
13012033 ACCCACGAAACAAGCGTGCGGGCACTCAGTCGACTAGAGGGGTGGGATGCGTAAGCCTGGGATCG
255 ACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
* * * * * * ** * *
13012098 ACCGAGTCCCCCTCTGTGTGTTGTCGATCCTGCTACCGTAACCCTCGGTCTAGTCTGATCTTCGT
320 ACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGA
* * * * * * *
13012163 CTGAGAATGAACTCCATATTCCTAAGCCAGCCGACAAAATGAGCGGGCGGACGGGCGGGCGGGCA
385 CTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC-GAA--A-CGAGCGGA---GCGGGCGGGCA
* * * * *
13012228 CTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTAGATTGATAGGGTGGCAGG-GGCCTTTAGG
443 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG-GTTTAGG
* ***
13012292 CCCATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCT
507 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC-CT
* * *
13012357 TAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAAATTTCT-AAAC
571 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-GATTTTTGAAAC
* * * * ** *
13012421 TTTTTACGGTTCGGGATTTTTCAAAA-GTTTTTCGGAAGGAGTTTTCACCCCAAACTTGGTAGAT
635 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
13012485 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
700 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
13012550 TTTGTGACCATTTAAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
765 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
13012615 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
830 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
13012654 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** *
13012719 CACACACCCCCTGGCCCCTCGATCGTCGGAACCCCAATGCTACCGGTCAGGTTCTCCGACGATGC
66 CGCACACCCCCTGGCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGC
* *
13012784 TCCGACGATGGTGCCCCAACGAAGAGAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
130 TCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * **
13012849 ACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCACATGCCTAAGTCAACCCA
195 GCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
13012914 TGAAATAAACGTGCAGGCGATCAGCCGGCCAGAGGGGCAGGATGCCCAAGCCGAGGATCGGCCGG
260 CGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGG
* * * * ** *
13012979 GTCCCCCTCTGCGTGGTGCCGATCCTGCTCCCGTAACCCTCGGTCCGGTCCAATCTTAGATTGGG
325 GTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
* *
13013044 AATGAACTCCGTATTCCTAAGCCAATTGACGAAACGAGCGGA-CGGGCGGGCACTACGTCGGCCA
390 AATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGAGCGGGCGGGCACTACGTCGGCCA
* * * * *
13013108 GAGACATGAGATGCGTAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATAT
455 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** *
13013173 TTCTGTGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGT
520 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-TTAAGCCTTCACGT
* *
13013238 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAA
584 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG
* * *
13013303 GATTTTTTAATATTTTTTTCG-AAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
649 GATTTTTTAAAATTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
* * * * *
13013367 TTTGTTGGCATGCACAAAAAAGTTCAGCTAAAAACTCAAAGTGTATAAGATTTTGTGACCAATTA
714 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
13013432 AAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATG
779 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
**
13013497 CTCTTTAAGGGGGTGCAAGTTCTCG
844 CTCTTTAAGGGGGTGTGAGTTCTCG
* * *
13013522 AGGTTTGATAAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
13013587 TGCACACCGCCCCCCCGGCCCCCCGATCATCGGAA---C--T------AGTCAGGTTCTCCGGTG
66 CGCACA----CCCCCTGG-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATG
* * * *
13013641 ATGCTCCGGCGATGGTGCCCCGCCGAAGAAAAATACGGCACTAGCACATGCCCAAG-CCAGCATG
126 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
13013705 TGCTGCCGCAACCCCCGGT-CTAGTCCGATCTTAGACTGGGAATGCACTCCGTATGCCTAAGTCA
191 TGCTGCCGCAACCCTCGGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
13013769 ACCCACGAAACGAGCGTGCGGGCGCTCAACTGGCCATAGGGGCAAGATGCGCAAGTCGGGGATCG
255 ACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
* * * * **
13013834 ACCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCCACAACCCTCAG-CCAGGTCCAATCTTAG
320 ACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCC-GGTCTGATCTTAG
* * *
13013898 ACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGACCGGGCGGGC
384 ACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC------G-GAGCGGGCGGGC
* * *
13013963 ACTATGTCGGCCAGGGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
442 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
13014028 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTAGTAAATTCATACAATGGTCCCT
507 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCT
* * *
13014093 TAAGCCTTTACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
571 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * * *
13014158 TTTTGCGGTTCAGGAGTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTGGACG
636 TTTTACGGTTCAGGATTTTTTAAAATTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACA
*
13014222 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-TAAAAAACTCGAAGAGTACAAGAT
701 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGAT
*
13014286 TTTGTGACCATTT-ACAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
765 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
13014350 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
830 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
13014389 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCGATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
13014454 CGCACACCACCTGGCTTGCCGGATCGCCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATG
66 CGCACACCCCCTGGC--CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATG
* * * * * * * * * * *
13014519 CTCTGGCGATAGTGCCTCGACGAAGAAAAATGCGGTACCAGCACATGCCTGATCCCAGAAAGTGT
129 CTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
13014584 TGCTGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATAAACTTCGTATGCTTAGACTAGGAA
194 TGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGG-----A------ATG---A-AC------
* * *
13014649 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-CCGGCTAGAGGGGT
238 T---C-C-GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * *
13014713 GGGATGCGCAAGACAGGGATCGATCGGGTCCTCCTCTGCGTGCTGCTGATCCTACTACTGCAACC
298 AGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACC
* * * * * * *
13014778 CTCAGTCTGGTCTGATATTAGACTGGGAGTGAAGTCCGTATGCGTAAGCTAACTGACGAAACGAG
363 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAG
* * * *
13014843 CGGGCAGCCGGGCGGGCGGGCACTACGTCGACTAGAGTGACGGGATGCGCATGCCGTGGATCGAT
428 C-GG-A-----GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
13014908 AGGGTGGCAGGTGGGTTTAGGCACAACTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTG
486 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* * *
13014973 TAAATTCATATAATGGTGCCTTATAGCCTTCATGTGAAGTTTCATGGCAAGACGACTGGTTTTCT
551 TAAATTCATACAATGGT-CCTTA-AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * * *
13015038 ATTTTTCATGATTTTCAAAACTTTTTGCCGCTT-GGGATTTTTTAAAATTTTTTT-GAAAGGAGT
614 ATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCAGGATTTTTTAAAATTTTTTTCGAAAGGAGT
** * *
13015101 TTTATCCCCAAACTTGGTAGACATGATCCTTCTATTTTTGTTGGCATGCAC-AGAAAATCTCAGC
678 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT-TCAGC
*
13015165 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTT
742 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
13015230 AATGGCTACTAGTAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
807 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
13015292 AGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTGCCAGTACCCATCGCACCTCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
13015356 CGCACACCCCCAGCCCCCGCGATCGTCAGAACCCCAATGCCGCCAGTCAGGTTCTCCGATGATGC
66 CGCACACCCCCTGGCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGC
* * * *
13015421 TCCGACGATGGTG-CCAGGCGAAGAAAAATACGGCACCAGCACATGTCCGAGCCCAGCATGTGTT
130 TCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* *
13015485 GCCGTAACTCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
195 GCCGCAAC-C-C--TC--G---G-TC-----C---G-AT---CT---GAT-CTTAGACTGGGAAT
* *
13015550 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCA
234 GAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA
* ** * * * * * *
13015615 GGATGCGCAAGTCCGGGGAT-GGCTTGGTCTCCCTCTACATGCTACCAATCCTACTACCGCAAAC
299 GGATGCGCAAG-CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACC
* * * * **
13015679 CTTGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAAAAGACGAAACGAG
363 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAG
** * * * *
13015744 CGG-GCGGGTAGGCACTACGCCTGTCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGG
428 CGGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* **
13015808 TAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGTTATTTTTATGGCTTGTAAATTC
493 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
** *
13015873 ATACAATAATGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCA
558 ATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
** * *
13015938 CGATTTTCAAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTT-GAAAGGAGTTTTGGCCCC
622 CGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTCGAAAGGAGTTTTGGCCCC
* **
13016002 AAACTTAGTAGACATGATAATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
687 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
13016067 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
752 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
13016132 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCG
817 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
13016183 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCTTGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
13016248 CGCACACCCCCT
66 CGCACACCCCCT
13016260 CCGACGATGC
Statistics
Matches: 3856, Mismatches: 499, Indels: 240
0.84 0.11 0.05
Matches are distributed among these distances:
859 4 0.00
860 206 0.05
861 64 0.02
862 1 0.00
863 6 0.00
864 11 0.00
866 1 0.00
867 169 0.04
868 819 0.21
869 13 0.00
872 25 0.01
873 281 0.07
874 4 0.00
875 66 0.02
876 314 0.08
877 7 0.00
880 2 0.00
881 263 0.07
882 199 0.05
883 6 0.00
887 3 0.00
891 37 0.01
892 299 0.08
893 129 0.03
895 1 0.00
896 3 0.00
897 1 0.00
900 94 0.02
901 413 0.11
902 270 0.07
903 113 0.03
904 2 0.00
905 1 0.00
906 1 0.00
909 1 0.00
910 2 0.00
911 2 0.00
912 1 0.00
915 3 0.00
918 1 0.00
919 2 0.00
921 1 0.00
922 2 0.00
925 2 0.00
926 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (868 bp):
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCTGGCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCT
CCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGG
TCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGAGCGGGCGGGCACTACGTCGGCCAG
AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGA
TTTTTTAAAATTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCG
Found at i:13014648 original size:26 final size:26
Alignment explanation
Indices: 13014610--13014662 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13014600 CTGATCTGAT
*
13014610 CTTAGACTGGGAATAAACT-TCGTATG
1 CTTAGACTAGGAATAAACTCT-GTATG
*
13014636 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
13014662 C
1 C
13014663 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:13015546 original size:26 final size:26
Alignment explanation
Indices: 13015510--13015562 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13015500 CTGGTCTGAT
13015510 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13015536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13015562 C
1 C
13015563 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13015612 original size:901 final size:898
Alignment explanation
Indices: 13012874--13016258 Score: 4203
Period size: 901 Copynumber: 3.8 Consensus size: 898
13012864 CCGATCTGAT
** * ** * * *
13012874 CTTAGACTGGGAATGAACTCCACATGCCTAAGTCAACCCATGAAATAAACGTGCAGGCGATCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-C
* * * * ** * *
13012939 CGGCCAGAGGGGCAGGATGCCCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGGTGCCGATCC
65 TGGCCAGAGGGGCAGGATGCGCAAGACGGGGATCGATCGGGTCCTCCTCTGCGTGCTGCCGATCC
* * * * * ** * *
13013004 TGCTCCCGTAACCCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATTCCTAAGCCAA
130 TACTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * *
13013069 TTGACGAAACGAGC-GGA-----CGGGCGGGCACTACGTCGGCCAGAGACATGAGATGCGTAAGC
195 CAGACGAAACGAGCGGGAGCGGGCGGGCGGGCACTACGTC-GACAGAGAGACGGGATGCGCAAGC
* ** *
13013128 CGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTTCCAATGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
13013193 TTTATGGCTTGTAAATTCATACAATGGT-CCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
324 TTTATGGCTTGTAAATTCATACAATGGTGCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** *** * *
13013257 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAAGATTTTTTAATATTTTTTT
388 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCCGTTCAGGATTTTTTAAAATTTTTTT
* *
13013322 CG-AAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
453 -GAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * * *
13013386 AAGTTCAGCTAAAAACTCAAAGTGTATAAGATTTTGTGACCAATTAAAAAAAGTGTCCCCATTCC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* **
13013451 AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCAAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
13013516 TTCTCGAGGTTTGATAAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * * *
13013581 CATGTGTGCACACCGCC--C-CCCCGG-CCCCCCG-A--TC-AT-CGGAACTAGTCAGGTTCTCC
712 CATGTGCGCACACCCCCAGCTCCCCGGATCGCCAGAACCCCAATGCCG--CCAGTCAGGTTCTCC
** * * ** * * **
13013637 GGTGATGCTCCGGCGATGGTGCCCCGCCGAAGAAAAATACGGCACTAGCACATGCCCAAG-CCAG
775 GACGATGCTCCGACGATAGTGCCTAGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAG
* * * *
13013701 CATGTGCTGCCGCAACCC-C---C-G----G-TC-T--A----G-------TCC-GAT-
840 AAAGTGTTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATAAACTCCATATG
*
13013734 CTTAGACTGGGAATGCACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AC
* * * * * *
13013799 TGGCCATAGGGGCAAGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCC
65 TGGCCAGAGGGGCAGGATGCGCAAGACGGGGATCGATCGGGTCCTCCTCTGCGTGCTGCCGATCC
* * * * ** *
13013864 TACTGCCACAACCCTCAGCCAGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
130 TACTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13013929 CCGACGAAACGAGCGGGTG-GGCGACCGGGCGGGCACTATGTCGGCCAGGGAGACGGGATGCGCA
195 CAGACGAAACGAGCGGGAGCGG-G--CGGGCGGGCACTACGTC-GACAGAGAGACGGGATGCGCA
*
13013993 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
13014058 ATTTTTATGGCTAGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
13014123 GGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGAGTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCCGTTCAGGATTTTTTAAAATTTTT
* * * *
13014188 TCGGAAGGAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
451 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
13014253 AAAATTCAG-TAAAAAACTCGAAGAGTACAAGATTTTGTGACCATTT-ACAAAAGTGTCCCCATT
516 AAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
13014316 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13014381 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCGATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** ** * * *
13014446 ATCATGTGCGCACACCACCTGGCTTGCCGGATCGCCGGAACCCCAATGCCGCCGGTTAGGTTCTC
710 ATCATGTGCGCACACC-CCCAGCTCCCCGGATCGCCAGAACCCCAATGCCGCCAGTCAGGTTCTC
* * * * * *
13014511 CGACGATGCTCTGGCGATAGTGCCTCGACGAAGAAAAATGCGGTACCAGCACATGCCTGATCCCA
774 CGACGATGCTCCGACGATAGTGCCTAGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCA
* * *
13014576 GAAAGTGTTGCTGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATAAACTTCGTATG
839 GAAAGTGTTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATAAACTCCATATG
* * *
13014636 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCACT
* ** * *
13014701 GGCTAGAGGGGTGGGATGCGCAAGACAGGGATCGATCGGGTCCTCCTCTGCGTGCTGCTGATCCT
66 GGCCAGAGGGGCAGGATGCGCAAGACGGGGATCGATCGGGTCCTCCTCTGCGTGCTGCCGATCCT
* * * * * *
13014766 ACTACTGCAACCCTCAGTCTGGTCTGATATTAGACTGGGAGTGAAGTCCGTATGCGTAAGCTAAC
131 ACTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
13014831 TGACGAAACGAGCGGGCAGCCGGGCGGGCGGGCACTACGTCGACTAGAGTGACGGGATGCGCATG
196 AGACGAAACGAGCGGG-AG-CGGGCGGGCGGGCACTACGTCGAC-AGAGAGACGGGATGCGCAAG
* * *
13014896 CCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACAACTTCATATTTCTGTATGCCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
13014961 TTTTATGGCTTGTAAATTCATATAATGGTGCCTTATAGCCTTCATGTGAAGTTTCATGGCAAGAC
323 TTTTATGGCTTGTAAATTCATACAATGGTGCCTTA-AGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
13015026 GACTGGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCCGCTT-GGGATTTTTTAAAATTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCCG-TTCAGGATTTTTTAAAATTTTT
** * *
13015090 TTGAAAGGAGTTTTATCCCCAAACTTGGTAGACATGATCCTTCTATTTTTGTTGGCATGCAC-AG
451 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
*
13015154 AAAATCTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATT
516 AAAAT-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
13015219 TCAGACACTTTAATGGCTACTAGTAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
13015284 AGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTGCCAGTACCCATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
13015348 CTCATGTGCGCACACCCCCAGC-CCCCGCGATCGTCAGAACCCCAATGCCGCCAGTCAGGTTCTC
710 ATCATGTGCGCACACCCCCAGCTCCCCG-GATCGCCAGAACCCCAATGCCGCCAGTCAGGTTCTC
* * *
13015412 CGATGATGCTCCGACGATGGTGCC-AGGCGAAGAAAAATACGGCACCAGCACATGTCC-GAGCCC
774 CGACGATGCTCCGACGATAGTGCCTAGACGAAGAAAAATACGGCACCAGCACATG-CCTGAGCCC
* * * * * *
13015475 AGCATGTGTTGCCGTAACTCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
838 AGAAAGTGTTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATAAACTCCATATG
13015536 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-C
* * * * * * * *
13015601 TGGCCAGAGGGGCAGGATGCGCAAGTCCGGGGATGGCT-TGGT-CTCCCTCTACATGCTACCAAT
65 TGGCCAGAGGGGCAGGATGCGCAAG-ACGGGGATCGATCGGGTCCT-CCTCTGCGTGCTGCCGAT
* ** * *
13015664 CCTACTACCGCAAACCTTGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCC
128 CCTACTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * * *
13015729 AAAAGACG-AA--A-C--GAGCGGGCGGGTAGGCACTACGCCTGTCAGAGAGATGGGATGCGCAA
193 AACAGACGAAACGAGCGGGAGCGGGCGGGCGGGCACTACGTC-GACAGAGAGACGGGATGCGCAA
* **
13015788 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGTTA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
**
13015853 TTTTTATGGCTTGTAAATTCATACAATAATGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13015918 GACTCTTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCCGTTCAGGATTTTTTAAAATTTTTT
* **
13015983 TGAAAGGAGTTTTGGCCCCAAACTTAGTAGACATGATAATTGTATTTTTGTTGGCATGCACAAAA
452 TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
13016048 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
13016113 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
13016177 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
13016242 CTTGTGCGCACACCCCC
712 CATGTGCGCACACCCCC
13016259 TCCGACGATG
Statistics
Matches: 2192, Mismatches: 266, Indels: 102
0.86 0.10 0.04
Matches are distributed among these distances:
860 177 0.08
861 3 0.00
867 154 0.07
868 311 0.14
869 2 0.00
870 1 0.00
871 4 0.00
872 4 0.00
873 1 0.00
875 61 0.03
876 20 0.01
877 3 0.00
880 1 0.00
881 1 0.00
885 1 0.00
886 2 0.00
887 1 0.00
889 1 0.00
891 34 0.02
892 302 0.14
893 133 0.06
894 4 0.00
895 1 0.00
897 1 0.00
898 1 0.00
900 155 0.07
901 413 0.19
902 292 0.13
903 106 0.05
904 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCACT
GGCCAGAGGGGCAGGATGCGCAAGACGGGGATCGATCGGGTCCTCCTCTGCGTGCTGCCGATCCT
ACTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
AGACGAAACGAGCGGGAGCGGGCGGGCGGGCACTACGTCGACAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCCGTTCAGGATTTTTTAAAATTTTTTTGAA
AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCAGCTCCCCGGATCGCCAGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGAT
GCTCCGACGATAGTGCCTAGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGAAAGTG
TTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATAAACTCCATATG
Found at i:13019743 original size:26 final size:26
Alignment explanation
Indices: 13019714--13019766 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13019704 CCAGTCCGAT
*
13019714 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
13019740 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
13019766 C
1 C
13019767 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13020640 original size:26 final size:26
Alignment explanation
Indices: 13020611--13020663 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13020601 CTGGTTCAAT
13020611 CTTAGACT-GCGAATGAACTCTGTATG
1 CTTAGACTAG-GAATGAACTCTGTATG
13020637 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
13020663 C
1 C
13020664 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:13021011 original size:899 final size:891
Alignment explanation
Indices: 13019086--13021694 Score: 3368
Period size: 898 Copynumber: 2.9 Consensus size: 891
13019076 AGCGGGCGGG
* * * * *
13019086 CGGGATGCGCAAGCTGTGGATCAATAGGGTGGTAGCTGGGTTTAGGTACATCTTTATATTTCTGC
1 CGGGATGAGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTAC
* * * *
13019151 ATGCCAATGACATTTTTATGGCTTTTAAATTCACACAATGGTCCATTAAGCCTTCACGTGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTT
** *
13019216 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTTGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG-CGTTTGGGATTTT
* * * *
13019281 TTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTTGTAGATGTGATACTTGTATTTTTGTTG
195 TTAAAATTTTTTCGGAAGTAGATTTGTCCCCAAAC-TTGTAGA--TGATCCTTGTATTTTTGTTG
13019346 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
257 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
13019411 TGT-CCCATTTTAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
322 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
13019475 AGGGGTGTGAGTTATAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAAC
387 AGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
13019540 CCATCGCACATCATGTGCGCACACCCCCCTCGCCACCCCGATTGCCAAAACCCCAATGTCGTCGG
452 CCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGA-TCCCAAAACCCTAATGCCGTCGG
* * * * *
13019605 TCAGGTTCTCCAGCGATGCTCCGGCAATGGAGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
515 TCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATG
* * * **
13019670 CCTGAGCCCAGCATGTGTTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCC
580 CCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCC
* *
13019735 GTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGC
644 GTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGC
* * * * * * * * *
13019800 TCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGGTC-AGCCGAGTCCCCCTCTGCATGCTGC
709 TCAGCCAGCCAGAGGGGCGGGATGCGAAAGTCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGT
* * * ** * *
13019864 CGATCCTACTACTATAACCCTCTG-TCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCT
773 CGATCCTGCTAC-CTAACCCTC-GATCCGACCTGATCTTAGACTAGGAATGAACTCCGTATGCCT
*
13019928 AACCCAACCGACGAAACGAGCAGACAGGCGGGCGGGCACTACGTCGACCAGAGAGA
836 AACCCAACCGACGAAACGAGCAGACAGGCGGGCGGGCACTACGTCGACCAGAGAAA
*
13019984 CGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTAC
1 CGGGATGAGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTAC
* *
13020049 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTCCTTTAAGCCCTCACGTGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTT
* * ** *
13020114 TCATGGCAAGATGACTCGTTTTCTATTATTCACAATTTTTGCAACTTTTTGCAGTTTGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC-GTTTGGGATTTT
* *
13020179 TTAAAATTTTTTCGGAAGTAGGTTTGTCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTG
195 TTAAAATTTTTTCGGAAGTAGATTTGTCCCCAAACTT-GTAG--ATGATCCTTGTATTTTTGTTG
*
13020244 GCATGCACAAAAAAATTCAGCTAAAAACT-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAA
257 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
13020308 TGTCCCCATTTCAGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
322 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
13020373 AGGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCC
387 AGGGG-TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
** * *
13020438 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCCCCGAACCATAATGCCG-CTGA
451 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCCCAAAACCCTAATGCCGTC-GG
*
13020502 TCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATG
515 TCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATG
* * * *
13020567 CCCGAGCCCAGCATGTGCTACCGCAACCCTTGGTCTGGTTCAATCTTAGACTGCGAATGAACTCT
580 CCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTG-GAATGAACTCC
* ** *
13020632 GTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGC
644 GTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGC
* * * * * * **
13020697 TGAACCAGCCAGAGGGGCAGAAAGCGAAAGTC-GAGATCGATCGGGTCCCCCTCTATGTGCTGTC
709 TCAGCCAGCCAGAGGGGCGGGATGCGAAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTC
*
13020761 GATCCTGCTACCTCAACCCTCGATCCGACCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAA
774 GATCCTGCTACCT-AACCCTCGATCCGACCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAA
* ** * * * * *
13020826 GCCAATTGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTTGGCCAGAGAAA
838 CCCAACCGACGAAACGA----GCAGACAGGCGGGCGGGCACTACGTCGACCAGAGAAA
* *
13020884 CGGGAT-AGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
1 CGGGATGAGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTAC
* * *
13020948 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGTTTAAGCCTTCATGTGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTT
* * *
13021013 TTATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACATTTTGC------GA---TT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGTTTGGGATTTTT
* * * *
13021069 TGAAA-CTTCTC---A-T-GATCTT-T---C--AC-----G-TGATCGTTGTATTTTTGTTGGCA
196 TAAAATTTTTTCGGAAGTAGAT-TTGTCCCCAAACTTGTAGATGATCCTTGTATTTTTGTTGGCA
*
13021116 TGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
260 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
13021181 CCCCATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTTTTTATGG
325 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
13021246 GG-GTGTAGGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGTGCCAAGTACCAGCACC
390 GGTGTG-A-GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
13021310 CATTGTACATCAAGTGCGCACACCCCCTCGGCCCCCCCGATCGTCAAAACCCTAGTGCCGTCGGT
453 CATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATC-CCAAAACCCTAATGCCGTCGGT
* * * ** * * *
13021375 CAGGTTCTCCGATGATGCTCTGACGATGGTGCCTCGGTGAAGAAAATTACGGCACTAGCACATGC
516 CAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * *
13021440 CCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGATCCGATCTTATACTGGGAATGAACTCCA
581 CCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCG
* ** *
13021505 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGTAGGTGCT
645 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCT
* * *
13021570 CAGCCAACCAGAGGGGCGGGATGC-ACAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTATC
710 CAGCCAGCCAGAGGGGCGGGATGCGA-AAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTC
* * * *
13021634 GATCCTGCTACCGTAACCCTTGATCCGGTCC-AATCTTATAC-AGGGAATGAACTCCGTATGC
774 GATCCTGCTACC-TAACCCTCGATCC-GACCTGATCTTAGACTA-GGAATGAACTCCGTATGC
13021695 TTTGACTGGG
Statistics
Matches: 1507, Mismatches: 176, Indels: 81
0.85 0.10 0.05
Matches are distributed among these distances:
868 3 0.00
869 47 0.03
870 177 0.12
871 15 0.01
872 207 0.14
873 77 0.05
874 4 0.00
878 2 0.00
880 1 0.00
883 3 0.00
884 3 0.00
885 1 0.00
888 4 0.00
889 6 0.00
892 2 0.00
895 2 0.00
896 91 0.06
897 249 0.17
898 331 0.22
899 244 0.16
900 38 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (891 bp):
CGGGATGAGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTAC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGTTTGGGATTTTT
TAAAATTTTTTCGGAAGTAGATTTGTCCCCAAACTTGTAGATGATCCTTGTATTTTTGTTGGCAT
GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCCCAAAACCCTAATGCCGTCGGTCAGGT
TCTCCGGTGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
CCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGAATGAACTCCGTATGCT
TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCA
GCCAGAGGGGCGGGATGCGAAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
CTACCTAACCCTCGATCCGACCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAACCCAACCG
ACGAAACGAGCAGACAGGCGGGCGGGCACTACGTCGACCAGAGAAA
Found at i:13021519 original size:26 final size:26
Alignment explanation
Indices: 13021483--13021535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13021473 CTGATCCGAT
*
13021483 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13021509 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13021535 C
1 C
13021536 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13021768 original size:185 final size:185
Alignment explanation
Indices: 13021454--13021879 Score: 550
Period size: 185 Copynumber: 2.3 Consensus size: 185
13021444 GCCCAGCATG
* * * * *
13021454 TGCTACCGTAACCCTCGGTCTGATCCGATCTTATACTGGGAATGAACTCCATATGCTTAGACTGG
1 TGCTACCGTAACCCTTGATCCGGTCCGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGG
* * ** * *
13021519 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGTAGGTGCTCAGCCAACCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACACACGAAATGAGCATGCAGGCGCTCAGCCAACCAGAGG
* * * *
13021584 GGCGGGATGCACAAGT-CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCC
131 GGCGAGATACACAA-TCCGGGGATCGATCGGGTCCCCCTCTGCATGCTATCGATCC
* * *
13021639 TGCTACCGTAACCCTTGATCCGGTCCAATCTTATACAGGGAATGAACTCCGTATGCTTTGACTGG
1 TGCTACCGTAACCCTTGATCCGGTCCGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGG
* * **
13021704 GAATGAACTCCGTATGCCTAAGTCAACACACGAAATGAGCATGCGGGCGCTCAGTCGGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACACACGAAATGAGCATGCAGGCGCTCAGCCAACCAGAGG
* * *
13021769 GGCGAGATACGCAATCCGGGGATCGATCGGGTCCCCCTTTGCATGCTATCGATCT
131 GGCGAGATACACAATCCGGGGATCGATCGGGTCCCCCTCTGCATGCTATCGATCC
* * * * *
13021824 TGCTGCTGCAACCC-TCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 TGCTACCGTAACCCTTGA-TCCGGTCCGATCTTATACTGGGAATGAACTCCGTATGC
13021880 CTAAGCCAAC
Statistics
Matches: 207, Mismatches: 32, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
184 3 0.01
185 204 0.99
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (185 bp):
TGCTACCGTAACCCTTGATCCGGTCCGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACACACGAAATGAGCATGCAGGCGCTCAGCCAACCAGAGG
GGCGAGATACACAATCCGGGGATCGATCGGGTCCCCCTCTGCATGCTATCGATCC
Found at i:13022594 original size:26 final size:26
Alignment explanation
Indices: 13022558--13022610 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13022548 CTAGTCCAAT
13022558 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13022584 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13022610 C
1 C
13022611 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13023490 original size:26 final size:26
Alignment explanation
Indices: 13023461--13023513 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13023451 CCGGTTTGAT
*
13023461 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13023487 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13023513 C
1 C
13023514 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13023499 original size:903 final size:892
Alignment explanation
Indices: 13021661--13023690 Score: 3007
Period size: 903 Copynumber: 2.3 Consensus size: 892
13021651 CCTTGATCCG
* * *
13021661 GTCCAATCTTATACAGGGAATGAACTCCGTATGCTTTGACTGGGAATGAACTCCGTATGCCTAAG
1 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
13021726 TCAACACACGAAATGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCGAGATACGCAATCCGGGGA
66 TCAACCCACGAAATGAGCGTACGGGCGCTCAGTTGGCCAGAGGGGCGAGATGCGCAAGCCGGGGA
* * * * * *
13021791 TCGATCGGGTCCCCCTTTGCATGCTATCGATCTTGCTGCTGCAACCCTC-AGTCCGGTCCGATCT
131 TCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCTACAACCCTCGA-TCCAGTCCGATCT
* * * *
13021855 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--AAATGAGTGGGCGGGCACTACGT
195 TAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAAAGGAGGGGGCGGGCACTACGC
* * * * *
13021918 CGGCCAGAGAGACGGGATGCGTAAGCTGTGGATCGCTAGGGTGGTAGGTGGGTTTAGGCACATCT
260 CGGCCAGAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCG
*
13021983 TCATATCTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
325 TCATATCTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * *
13022048 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACCATTTTTGAAACTTTTTACG
390 CCACGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCAACATTTTTAAAACTTTTTACG
* * * * *
13022113 GTTTGGGATTTTTTAAAATTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGAGGTGATCCTTG
455 GTTCGAGACTTTTTAAAATTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
13022178 TATTTTTGTTGGCATGCACAAAAAATTTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCA
520 TATTTTTGTTGGCATGCACAAAAAATTTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCA
13022243 TTTGAAAAAAGTGTCCCCATTCCAGACACATTAATGGCTACTGGCAACAAACCTGTAAAATCTCA
585 TTTGAAAAAAGTGTCCCCATTCCAGACACATTAATGGCTACTGGCAACAAACCTGTAAAATCTCA
13022308 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
650 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * * * *
13022373 AGTACTAGCACCCATTCCACATCATGTACGCACACCCCCCCGGCCCCCCTGATCGCCCGTACCCT
715 AGTACTAGCACCCATTCCACATCATATACGCAAACCCCCCCGGCCCCCCCGATCACCAGAACCCC
** *
13022438 AATGCTGCCAGTCAAGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGC
780 AATGCCACCAGTCAAGTTCTCCGGTGAAGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGC
* * * *
13022503 ACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTA
845 ACCAGCACATGCTCGAGCCAAGCATGTGCTGCCACAAACCTCAGTCCA
* *
13022551 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTTCGTATGCCTAAG
1 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
13022616 TCAACCCACGAAATGAGTGTACGGGCGCTCAGTTGG-CAGAGGGGCGGGACGCGCAAGCCGGGGA
66 TCAACCCACGAAATGAGCGTACGGGCGCTCAGTTGGCCAGAGGGGCGAGATGCGCAAGCCGGGGA
* *
13022680 TCGGTCGGGTCCCTCTCTGCATGCTGTCGATCCTGCTGCTACAACCCTCGATCTAGTCCGATCTT
131 TCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCTACAACCCTCGATCCAGTCCGATCTT
*
13022745 AGACTTGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAACGGACGGGCAGGCGGGTGG
196 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA--AA-GGA-GGG--GGC----GG
* *
13022810 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGTTGTGTTTA
251 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTA
* *
13022875 GGCACATCGTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCC
316 GGCACATCGTCATATCTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
13022940 CTTAAGCCTCCATGTGAAGTTTCACGGCAAGATGACTCATTTTCTATTTTTCAAGATTTTTAAAA
381 CTTAAGCCTCCACGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCAACATTTTTAAAA
13023005 CTTTTTACGGTTCGAGACTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
446 CTTTTTACGGTTCGAGACTTTTTAAAA-TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
13023070 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTT-A-CCTAAAAACTCGAAGTGTACAAG
510 GTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTTCAGCC-AAAAACTCGAAGTGTACAAG
* *
13023133 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-AAGCAAAC
573 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACATTAATGGCTACTGGCAA-CAAAC
13023197 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGC
637 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG-TTTGATGAGGGATAGGGGGC
*
13023262 CAATATAAGGGCCCAGTACTAGCACCCATTCCACATCATATACGCAAACCCCCCCGGCCCCCCCG
701 CAATATAAGGGCCAAGTACTAGCACCCATTCCACATCATATACGCAAACCCCCCCGGCCCCCCCG
* * **
13023327 ATCATCAGAACCCCAATGCCACCGGTCAAGTTCTCCGGTGAAGCTCCGGTGATGGTGCCCCGACG
766 ATCACCAGAACCCCAATGCCACCAGTCAAGTTCTCCGGTGAAGCTCCGACGATGGTGCCCCGACG
* *
13023392 AAGAAAAATGCGGCACCAGCACATGCTCGAGCCAAGCATGTGCTGCCACAAACCTCAGTCCG
831 AAGAAAAATACGGCACCAGCACATGCTCGAGCCAAGCATGTGCTGCCACAAACCTCAGTCCA
*** *
13023454 GTTTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
13023519 TCAACCCACGAAACGAGCGTACAGGCGCTCAGCTGGCCAGAGGGGTGAGATGCGCAAGTCGGGGA
66 TCAACCCACGAAATGAGCGTACGGGCGCTCAGTTGGCCAGAGGGGCGAGATGCGCAAGCCGGGGA
* * * * * *
13023584 TCGGTCGGGTCCCCCGCTGCGTGTTGTCGATCCTGCTG-TCACAACCCTCAGTTCGA-TCCGATT
131 TCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCT-ACAACCCTC-GATCCAGTCCGATC
* * *
13023647 TTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAA
194 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
13023691 TGAGCATACG
Statistics
Matches: 1020, Mismatches: 99, Indels: 28
0.89 0.09 0.02
Matches are distributed among these distances:
889 116 0.11
890 92 0.09
891 1 0.00
893 2 0.00
894 2 0.00
895 2 0.00
897 3 0.00
901 206 0.20
902 187 0.18
903 292 0.29
904 113 0.11
905 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAATGAGCGTACGGGCGCTCAGTTGGCCAGAGGGGCGAGATGCGCAAGCCGGGGA
TCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCTACAACCCTCGATCCAGTCCGATCTT
AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAAAGGAGGGGGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCGT
CATATCTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTC
CACGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCAACATTTTTAAAACTTTTTACGG
TTCGAGACTTTTTAAAATTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAATTTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTCCAGACACATTAATGGCTACTGGCAACAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACTAGCACCCATTCCACATCATATACGCAAACCCCCCCGGCCCCCCCGATCACCAGAACCCCA
ATGCCACCAGTCAAGTTCTCCGGTGAAGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCA
CCAGCACATGCTCGAGCCAAGCATGTGCTGCCACAAACCTCAGTCCA
Found at i:13023903 original size:159 final size:159
Alignment explanation
Indices: 13023487--13023904 Score: 489
Period size: 159 Copynumber: 2.6 Consensus size: 159
13023477 ACTCCGTATG
*
13023487 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTACAGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAG-ACGGGCGCTCAG
* * * * * * * *
13023551 CTGGCCAGAGGGGTGAGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCGCTGCGTGTTGTCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCGCTGCATGCTGCCGATC
* ** *
13023616 CTGCTGTCACAACCCTCAGTTCGATCCGAT
130 CTACTACCACAACCCTCAATTCGATCCGAT
* * * * * *
13023646 TTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAATGAGCATACGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAGACGGGCGCTCAGC
* * *
13023711 CGGCCAGAGGGGCGGGATGAGCAATCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCGCTGCATGCTGCCGATCC
* * * * *
13023776 TACTACCGCGACCCTCAATTTGGTCTGAT
131 TACTACCACAACCCTCAATTCGATCCGAT
* * * *
13023805 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCAGGCGGGCACT-ACG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAGACGGGCGCTCA-G
* * * *
13023869 CCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCG
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
13023905 CTAGGGTGGT
Statistics
Matches: 214, Mismatches: 43, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
158 1 0.00
159 213 1.00
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.18
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAGACGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCGCTGCATGCTGCCGATCC
TACTACCACAACCCTCAATTCGATCCGAT
Found at i:13025909 original size:26 final size:26
Alignment explanation
Indices: 13025873--13025925 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13025863 CTGGTCCGAT
*
13025873 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13025899 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13025925 C
1 C
13025926 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13026790 original size:26 final size:26
Alignment explanation
Indices: 13026761--13026813 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13026751 CCAGTCCGAT
13026761 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13026787 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13026813 C
1 C
13026814 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13027692 original size:26 final size:26
Alignment explanation
Indices: 13027656--13027708 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13027646 CCAGTCTGAT
*
13027656 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13027682 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13027708 C
1 C
13027709 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13027710 original size:895 final size:892
Alignment explanation
Indices: 13025535--13028193 Score: 3593
Period size: 895 Copynumber: 3.0 Consensus size: 892
13025525 ACCGGTCAGG
*
13025535 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCAGACACTTTAATGGCTACTG
* * * * *
13025600 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGAGTAAGTTCTCGAGGTTTGGTGAGGG
66 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
13025665 ATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCTCG
131 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
* * * * * * *
13025730 CCCCCCCCGATCATCAGAACCGTAATGCTGCCGATCAGGTTCTCCGATGATG-TTCTGGCGATGG
196 ACCCCCCCGATC-GCCGAAACGCAATGCTGCCGGTCAGGTTCTCCGGTGATGCTT-TGGCGATGG
* ** * *
13025794 TGCCCCGGTGAAGTAAAATGTTGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCTGTAACTCT
259 TGCCCCGATGAAGTAAAATGTTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
** * *
13025859 TGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCGTAT
324 TGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
*
13025924 GCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
389 GCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * *
13025989 TCAGGGATCAGCCGGGTCCCCCTCTGTGTGCTGCTGATCTTACTACCGTAACCCTC-AGTCC-AG
454 TCGGGGATCA-TCGGGTCCCCCTCTATGTGCTGC-GATCCTGCTACCGCAACCCTCGA-TCCGA-
* * *
13026052 TCTGATCTTAGACTGGGAATGAACTTCGTATCCCTAAGCCAATCGATGA-AACGAACGGGCAGGT
515 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CCA--ACAA--AAC--G-A-GT
* * * * *
13026116 GGGCGGGCGAGCACTATGCCGGCCAGAGAAACGGGATGCACAAGACGTGGATCGATAGGATGGTA
571 GGGCGGGCGGGCGCTATGCCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTA
13026181 GGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATTGCTTGTAAATTCAT
636 GGTGGGTTTAGGCACATCTTCATATTTCT-CATTCCAATGCCATTTTTATTGCTTGTAAATTCAT
13026246 ACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATA
700 ACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATA
**
13026311 ATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTATAATTTTTTCGAAAGGAGTTTTCACCCCAAA
765 ATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTATAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
*
13026376 CTTGGTAGATGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
830 CTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
**
13026439 AGTGTACAAGATTTCATGACCATTTGAAAAAA--G-A--C---T------CTTTAATGGCTACTG
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCAGACACTTTAATGGCTACTG
* *
13026490 GCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGAGGTGTGA-TTCTTGAGGTTTGATGAGGG
66 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
13026554 ATAGGGGGCCAATTTAAGGGCCAAGTACCAGCACCGATCGCACATCATTTGCACACA-CCCCCCG
131 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
* * * * * * * ** * *
13026618 ACCCCCCTGATCGCCGGAACCCTAATACCGTCGGTCAGGTTCTCCTGTGATGCTCCGACAATGGT
196 ACCCCCCCGATCGCCGAAACGC-AATGCTGCCGGTCAGGTTCTCCGGTGATGCTTTGGCGATGGT
* *** * *
13026683 GCCCC-AGTGAAGAAAAATACGGTACCAGCACATGCCCGAGCCCAGCATGTGCTGCCATAACCCT
260 GCCCCGA-TGAAGTAAAATGTTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
*
13026747 TGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT
324 TGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * * ** *
13026812 GCCTAAGTCAACCCATGGAACAAGCGTGCAAGCGCTCAACCGGCCAGAGGGGCATGATGTGCAAG
389 GCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * *
13026877 TTGGGGATCGATCAGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGATC
454 TCGGGGATC-ATCGGGTCCCCCTCTATGTGCTG-CGATCCTGCTACCGCAACCCTCGATCCGATC
* *
13026942 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGTGGGCAGGCGGG
517 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGTGGGCGGGCGGG
** * * * * * * *
13027007 CGCTGCGTCAGCCAGAGAGACGGAATGCGCAAGCCGTGAATCGATAGGGTGGCAAGTGGGTTTAG
582 CGCTATGCCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
13027072 GCACATCTTGATATTTCT-ATGTGCCAATGCCATTTTTATGGCTTTTTAATTCATACAATGGTCC
647 GCACATCTTCATATTTCTCAT-T-CCAATGCCATTTTTATTGCTTGTAAATTCATACAATCGTCC
* *
13027136 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAA
710 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAA
** * * * *
13027201 -TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTTGTAGAT
775 CTTTTTGCGGTTTGGGATTTTTTATAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAT
*
13027265 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
840 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
*
13027318 AGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTACCCATTTCAGACACTTTAATGGCTACT-
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCAGACACTTTAATGGCTACTG
* *
13027382 GCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCAAGGTTTGATGAGG
66 GC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGG
** *
13027447 GATAGGGGATCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCC
130 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * *
13027512 GGCCCCCCCGATCGCCGAAACTGCAATGGTGCCGGTCAGGTTCTCCGGCGATGCTTTGGCGATGG
195 GACCCCCCCGATCGCCGAAAC-GCAATGCTGCCGGTCAGGTTCTCCGGTGATGCTTTGGCGATGG
** *
13027577 TGCCCCGACAAAGTAAAATGTTGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCT
259 TGCCCCGATGAAGTAAAATGTTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
* *
13027642 TGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATAT
324 TGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
*
13027707 GCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGCCGGAGGGGCGGGATGCGCAAG
389 GCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* ** * * *
13027772 TCGGGGATCATCCGGGTCCCCCTCTATGTGCTGCCAATCCTGCTATTGCAACCCTTGGTCCGGTC
454 TCGGGGATCAT-CGGGTCCCCCTCTATGTGCTG-CGATCCTGCTACCGCAACCCTCGATCCGATC
* * *
13027837 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAACGAGCAGGCCAGCGGG
517 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAG-TGG---GCGGG
13027902 CGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGT
578 CGGGC--G--CTATGCCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGT
13027967 GGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATTGCTTGTAAATTCATACA
639 GGGTTTAGGCACATCTTCATATTTCT-CATTCCAATGCCATTTTTATTGCTTGTAAATTCATACA
*
13028032 ATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATT
703 ATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATT
** * *
13028097 TTCAAAACTTTTTGCGGTTTGGGATTTTTTATAATCTTTTCAAAAGGAGTTTTGGCCCCAAACTT
768 TTTGAAACTTTTTGCGGTTTGGGATTTTTTATAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
*
13028162 GGTAGACGTGATCCTTGTATTTTTGTTGGCAT
833 GGTAGATGTGATCCTTGTATTTTTGTTGGCAT
13028194 TTAAAAAAAG
Statistics
Matches: 1510, Mismatches: 204, Indels: 82
0.84 0.11 0.05
Matches are distributed among these distances:
878 2 0.00
879 137 0.09
880 180 0.12
881 2 0.00
882 2 0.00
884 4 0.00
885 1 0.00
886 2 0.00
887 7 0.00
888 296 0.20
889 74 0.05
890 54 0.04
892 2 0.00
893 54 0.04
894 70 0.05
895 326 0.22
896 5 0.00
899 10 0.01
901 1 0.00
902 1 0.00
903 168 0.11
904 110 0.07
905 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (892 bp):
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
ACCCCCCCGATCGCCGAAACGCAATGCTGCCGGTCAGGTTCTCCGGTGATGCTTTGGCGATGGTG
CCCCGATGAAGTAAAATGTTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTG
GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC
GGGGATCATCGGGTCCCCCTCTATGTGCTGCGATCCTGCTACCGCAACCCTCGATCCGATCTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGTGGGCGGGCGGGCGCT
ATGCCGGCCAGAGAGACGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTCATTCCAATGCCATTTTTATTGCTTGTAAATTCATACAATCGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTT
GCGGTTTGGGATTTTTTATAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
Found at i:13029445 original size:26 final size:26
Alignment explanation
Indices: 13029407--13029459 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13029397 TCAGTCCGAT
* * *
13029407 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13029433 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13029459 C
1 C
13029460 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13032052 original size:26 final size:26
Alignment explanation
Indices: 13032016--13032068 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13032006 CCAGTTCGAT
*
13032016 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
13032042 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
13032068 C
1 C
13032069 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:13032964 original size:26 final size:26
Alignment explanation
Indices: 13032913--13032965 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13032903 CCGATTCGAT
* **
13032913 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACCCCATATG
*
13032939 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTAGGAATGAACCCCATATG
13032965 C
1 C
13032966 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCATATG
Found at i:13033849 original size:27 final size:27
Alignment explanation
Indices: 13033811--13033863 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
13033801 TGGTCTGATC
*
13033811 TTAGACTGGGAATGAACTCCGTATGCT
1 TTAGACTGGGAATCAACTCCGTATGCT
* *
13033838 TTAGATTGGGAATCAACTTCGTATGC
1 TTAGACTGGGAATCAACTCCGTATGC
13033864 CTAGGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (27 bp):
TTAGACTGGGAATCAACTCCGTATGCT
Found at i:13035819 original size:869 final size:871
Alignment explanation
Indices: 13028191--13037050 Score: 9886
Period size: 869 Copynumber: 10.1 Consensus size: 871
13028181 TTTTTGTTGG
* * *
13028191 CATTTAAAAAAAGTGTCCCCATTCCAGACTCTTTAATGGCTACTGGCAGCAAAGCCTGTAAATAT
1 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA-CCTGTAAA-AT
* * *
13028256 CTCAAAATGC-CTTTTAAGGGGGTGTGGAGTTCTTGAGGTTTGATGAGGGAAAGAGGGCCAATAT
64 CTC-AAATGCTC-TTTAAGGGGGTGT-GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
13028320 AAGGGCC-AGATACCAGCACCGCATCACAAATCATGTGCGCGACACCCCCCGGCCCCCCCCGATC
126 AAGGGCCAAG-TACCAGCACC-CATCACACATCATGTGCGC-ACACCCCCC-G-CCCCCCCGATC
* * * * * **
13028384 GTCGGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGGTGAA
186 GCCGG-AACCCCAATGCTGTCGGTCAGGTTTTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA
* ** * * * * *
13028449 GAAAAATACGAAACCAGCACATGCCCGAGCACAGCATGTGCTGT-CGTAACCCTTGGTCCAGTCT
250 GAAAAATATGGCACCAACACATGCCTGAGCCCAGCATGTGCT-TCCGCAACCCTCGGTCC-G---
* *
13028513 GATCTTAGACTGGGAATGAACTCTATATGCTTAGACCTGGAATGAACTTCGTATGCCTAAGTCAA
310 G-TC-----C---G-AT---CT-TAGA--C-T-G----GGAATGAACTCCGTATGCCTAAGTCAA
* * *
13028578 CCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GAGGATCG
353 CCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCG
* * * * *
13028642 GTCGGGTCCCCCTCTG-GTACTGTCGATCCTGCTGCCG-TAACCCTTGGTCCGGTCCGATCTTAG
417 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCT-ACCCTCGGTCTGGTCCGATCTTAG
* * * * * *
13028705 A-TTGGAATGAACCCCGTATGCCTAAGCCAACCAAC-AAA--AG-GAGTGGGCAGGCGGGCACTA
481 ACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGGCGGGCACTA
* * * * *
13028765 CGTCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGCAAGTGGGTTTAGGCACA
545 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
13028830 TCTTCATATTTCTATGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
610 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
13028895 CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
675 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * * * *
13028960 ACGGTTCAGGACTTTTTGAAACTTTTTGCAGAAGGAGTTTTGG-CCCAAACATGGTAGACGTGAT
740 ACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
13029024 CCTTGTATTTTTGCTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTCGT
804 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
13029089 GAC
869 GAC
* *
13029092 CATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGTAAACCTGTAAAATCT
1 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
13029157 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
66 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* **
13029222 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGCCCCCCCGATTGCTAGAACC
131 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-GCCCCCCCGATCGCCGGAACC
*** * * *
13029287 CCAATGCCACCGGTCAGGTTCTT-CGACGATGCTCTGACGATGGTG-CCCGACGAAGAAAAATAC
195 CCAATGCTGTCGGTCAGGTT-TTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAT
* * *
13029350 GGCACCAGCACATGCCAGAGCCCAGCATGTGCTGT-CGTAACCCTCAGTCAGTCCGATCTTAGAT
259 GGCACCAACACATGCCTGAGCCCAGCATGTGCT-TCCGCAACCCTC-G---GT-C---C------
* *
13029414 TGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
309 --GG--T---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * *
13029479 GAGCGTACAGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGTGTCCCC
363 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCC
* * * * * * * *
13029544 CTTTGCGTGCTGCCAATCCTGTTGCCGCAAGCCTCGGTCCGGTCCAATCTTAGCCTGGGAATGAA
428 CTCTGCGTGCTGCCGATCCTGCTGCCGCTACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
* * * *
13029609 CTGC-ATATGCCTAAGCCAACCGACGAAAC-A------AGCGGGTGGGTACTACGCCGGCCAGAG
493 CT-CTGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAG
* * *
13029666 AGACGAGATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT
557 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * * * * *
13029731 TGCGTGCCAATGGCATTTTCATGCCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACATAAA
622 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* *
13029796 GTTTCCTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGAT
687 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGAT
* * * * *
13029861 TTTTTAAAATTTTTTCGGGAGGATTTTTGG-CCCAAACATGGTAGATGTGATCCTCGTATTTTTG
752 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
13029925 TTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGAC
817 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
**
13029980 CATTTGAAAAAAGTGTCTTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
1 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
13030045 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTTTGATGAGGGATAGGGGGCCAATATAAAGG
66 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
13030110 CCAAGTACCAGCACCCATCACACATCATGTGTGCACA-------CCCCCCCGATCGTCGGAACCC
131 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCCCCCCGATCGCCGGAACCC
* * * * **
13030168 CAATGCCGCCTGTCAGG---T-------T-CTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGG
196 CAATGCTGTCGGTCAGGTTTTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGG
** * *
13030222 CACCGGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTGGGCTG
261 CACCAACACATGCCTGAGCCCAGCATGTGCTTCCGCAACCC----T-C-G---G-TC-----C--
*
13030287 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACGAAACGA
309 -G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * *
13030352 GCGTGCGGGCGCTCAGCCGACAAGAGGGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCT
365 GCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCT
* * * * * *
13030417 CTGCATGCTGCCGATCCTGCTACCG-TAGCCCTCCGTCCGGTCTGATCTTAGACTAGGAATGAAC
430 CTGCGTGCTGCCGATCCTGCTGCCGCTA-CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
*
13030481 TCCGTATGCCTAAGCCAACCGACGAAACGA-----------GCGGGCACTACGCCGGCCAGAGAG
494 TCTGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
* *
13030535 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTG
559 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* *
13030600 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTCAGCCTTCACGTGAAGT
624 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * ** * *
13030665 TTCATGGCGAGACGACTCGTTTTCTAATTTTCATGATTTTCAAAACTTTTTTCAGTTCGGGATTT
689 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTT
*
13030730 TTTAAAATTTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCTTTGTATTTTTGT
754 TTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
13030794 TGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
818 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* ** *
13030848 CATTTGCAAAAAGTGTCCGTATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCT
1 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
13030913 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
66 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* ** *
13030978 CCAAGTTCCAGCACCCATTGCACATCATGTGCACACACCCCCCAGCCCCCCCGATCGCCGGAACC
131 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-GCCCCCCCGATCGCCGGAACC
* * * * * * *
13031043 CCAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCT
195 CCAATGCTGTCGGTCAGGTTTTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-AT
* * * * * *
13031108 -ACACCAACACATGCCCGAGCGCAGCATGTGCTACCTCAACCCTAGGTCCGGTCCGATCTTAGAC
259 GGCACCAACACATGCCTGAGCCCAGCATGTGCTTCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
**
13031172 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGTGCTCAGCCGGCCAG
324 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
** *
13031237 AGGGGCGGGATGCATAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC-A------T---
389 AGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* * * * * *
13031292 --AACCGTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGA
454 GCTACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
* * * *
13031355 AACGAACGGGCGGGCGGGCTGGCGGGCACTACACCGTCCAGAGAGACGGGATGCGCAAGTCGTGG
519 AACG-A---GC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
13031420 ATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
579 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* * * *
13031485 GGCTGGGAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGGTTCATGGCAAGATGACTCGT
644 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
**
13031550 TTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
709 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
*
13031615 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCA
774 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
13031680 GCTAGAAACTCGAAGTGTACAAGATTTTGTGAC
839 GCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
13031713 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCT
1 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
13031778 CAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
66 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
13031843 CCAAGTACCAGTACCCATTACACATCATGTGCGCACA----CCG-----CC---C-CCGGAACCC
131 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCCCCCCGATCGCCGGAACCC
* * * **
13031895 CAATGCTATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-AGTGAAGAAAAATGCG
196 CAATGCTGTCGGTCAGGTTTTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATATG
*
13031959 GCACCAACACATGCCTGAGCCCAGCATGTGCTGCCGCAAGCCTCGATCCAGTTCGATCTTAGACT
260 GCACCAACACATGCCTGAGCCCAGCATGTGCTTCCGCAA-CC-C--T-C-G---G-TC-----C-
* * ** *
13032024 GGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCGATAAAATG
309 --G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
** * * ** ** * *
13032089 TTCGTGCCGGTGCTCAGTCGGCCAGAGGGGCGGGATGCATAAATC-GGGCATCGTCCAGGTCCCC
364 AGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGG-ATCGGCCGGGTCCCC
** * * * ** * *
13032153 CTCTGCGTGCTGTTGATCCTACTGCTG-TAACCCTCGATCTACTCTGATCTTACACTGGGAATGA
428 CTCTGCGTGCTGCCGATCCTGCTGCCGCT-ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
** * *
13032217 ACTCTGTATGCCTAAGAAAACCGATGAAACGA---GCGGGCGGGCGGGCACTACGTCGGCCAGAG
492 ACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAG
*
13032279 AGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
557 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * * ** *
13032344 TGCATGCGAATGCCATTTTTATGGCTTGTAAATTCATGCAACAGTCCCCTAAGCCTTCACGTGAA
622 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* *
13032409 GTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTC-GTTCGGGA
687 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTTCGGGA
13032473 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
751 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * *
13032538 GTTGGCATGCAC-AAAAAAGTCAGCTAGAAACTTGAGGTGTACAAGATTTTGTGAC
816 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
13032593 CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
1 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
13032658 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAAGG
66 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
13032723 CCAAGTACCAGCACCCATCACACATCATGCGTGCACACACCCCCCTGGCCCCCCCGATCGTCGGA
131 CCAAGTACCAGCACCCATCACACATCAT--GTGCGCACACCCCCC--GCCCCCCCGATCGCCGGA
** * *
13032788 ACCCCAATG-TCGTTAGTCAGGTTCTT-CGACGATGCTCCTACGATGGTGCCCCGACGAAGAAAA
192 ACCCCAATGCT-GTCGGTCAGGTT-TTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * * * * *
13032851 ATGTGGAACCAACACATGCCAGAGCCCAACATGTGCTGCTGTAACCCTCGGTCCGATTCGATCTT
255 ATATGGCACCAACACATGCCTGAGCCCAGCATGTGCTTCCGCAA-CC-C--T-CG----G-TC--
* * *
13032916 AGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACCCCATATGCCTAAGTCAACCCACA
308 ---C--GG--T---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * * *
13032981 AAATGAGCGTACGGGTGCTCAGCCGACCAGACGGACGGGATGGGCAAGCCAGGGATCGACCGGAT
359 AAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGT
* * *
13033046 CCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTGTGGTCCGATCTTAGACTGGGAA
424 CCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCTACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
** * *
13033111 TGAACT-TCGTATGCCTAAGCCAACCGACGAAATTAGCGGGCGGGCGGGCGAGCACTACGTCGGC
489 TGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGGCACTACGCCGGC
* *
13033175 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTTAT
552 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
13033240 ATTTTTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
617 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * *
13033305 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAATTTTTTATGGTTC
682 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * * * *
13033370 GGGATTTTTAAAAATTTTTTCAGAAGGATTTTTAGCCCCAAACTT-GTAAGACATGATCCTTGTA
747 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTA
* * * *
13033434 TTTTTGTTGGCATCCACAAAAACATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGCGAC
811 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
13033495 CATTTGAAAAAAGTGTCCCCATTTTAGA-ACTTTAATGGCTACTGGTAGCAAACCTGTAAACTCT
1 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
13033559 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGG
66 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* ** * * ** *
13033624 CCAAGAAATAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCACTAGAGCCC
131 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCCCCCCGATCGCCGGAACCC
*** * ** * * * *
13033689 CAATGCAACCGGTCAGGTTCTCTAGCGATGCTCTGGCGATGGTGCCCCGACGTAGAAAAATACGG
196 CAATGCTGTCGGTCAGGTTTTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGG
* * * * * *
13033754 CACCAACACATGCCCGAGCCTAGCATGTGCTAT-CGTAACCTTCGGTCTGGTCTGATCTTAGACT
261 CACCAACACATGCCTGAGCCCAGCATGTGCT-TCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
*
13033818 GGGAATGAACTCCGTATGCTTTAGATTGGGAATCAACTTCGTATGCCTAGGTCAACCCACAAAAC
325 GGGAATGAACTCC----G---T--A-T--G------C--C-TA-----A-GTCAACCCACGAAAC
* * * * * * * *
13033883 GAGCGTGCAGGTACTCAGCTGGCCAGAAGGGCAGGATGCGCAAG-CTGAGGATCGACCGGGTCAC
363 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGGCCGGGTCCC
* * * * * *
13033947 CCTCTACGTGCT---G-T-C-G-T-----AACCCTTGGTTTGGTCCGATATTAGATTGGGAATGA
427 CCTCTGCGTGCTGCCGATCCTGCTGCCGCTACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
* * *
13034000 ACT-TCGTTTGCCTAAGCCAACCAACGAAACGAACGGGTGGGCGGGTGGACGGGCGGGCGGGCTC
492 ACTCT-GTATGCCTAAGCCAACCGACGAAACG-A-------GC----GG-CGGGCGGGCGGGCAC
* *
13034064 TACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
543 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* ** *
13034129 CATCTTCATATTTCTACATGCCAATGAAATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTA
608 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
13034194 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTT
673 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
** * * *
13034259 TTACGGTTTAGGATTTTTTTAAAA-ATTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACATG
738 TTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
13034323 ATCCTTGTATTTTTTTTGGCTTGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
802 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
13034388 GTGAC
867 GTGAC
* *
13034393 CATTTGAAAAAAGTGTACCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCT
1 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
13034458 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGG-CAATATAAGGG
66 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * ** *
13034522 CCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCAGCCCCGTCGATCGCCAGAACC
131 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-GCCCCCCCGATCGCCGGAACC
* * * *
13034587 CCAATGCTGCCGCTCAGGTTTTCTGGCGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATAC
195 CCAATGCTGTCGGTCAGGTTTTCCGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATAT
* *
13034651 GGCACCAACACATGCCTGAGCCCAGCATGTGCTTTCACAACCCTCGGTCCGGTCCGATCTTAGAC
259 GGCACCAACACATGCCTGAGCCCAGCATGTGCTTCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* * *
13034716 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTCAGTCGGCCAG
324 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * * * * * * * *
13034781 AGTGGTGGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGATGCCGATCTTGTTGCT
389 AGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* * *
13034846 GCTACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGA
454 GCTACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
* *
13034911 AACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCG
519 AACGAGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
13034976 ATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTATGTTCCAATGCCATTTTTATGGCT
583 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
* * *
13035041 TGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCAGGGCAAGACGACTCGTTCTC
648 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * *
13035106 TATTTTTCATTATTTTCGAAACTTTTTACGGTTCGGGACTTTTTT-AAATTTTTTCGAAAGGAAT
713 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGT
** * * *
13035170 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATCCTTCTTGGCATGCACAAGAAAAGTCAGCT
777 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
13035235 AAAAACTCGAAGTGTACAAGATTTTGTGAC
842 AAAAACTCGAAGTGTACAAGATTTTGTGAC
*
13035265 CATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCT
1 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
13035329 CAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGG
66 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
13035392 CCAAGTACCAGCACCTATCGCACATCATGTGCGTACACCCCCCGGCCCCCCCGATTGCCGGAACC
131 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-GCCCCCCCGATCGCCGGAACC
* * **
13035457 CCAATGCTGTCGCTCAAGTTTTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAA-ATG
195 CCAATGCTGTCGGTCAGGTTTTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATG
* *
13035521 ACACCAACACATGCCTGAGCCCAGCATGTGCTTTCGCAACCCTCGGTCCGGTCCGATCTTAGACT
260 GCACCAACACATGCCTGAGCCCAGCATGTGCTTCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * *
13035586 GGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGGCCAGA
325 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
* * * * * * * *
13035651 GTGGTGGGATGCGCAAGCCAGGGATCGGCTGGGTCCCCTTCTACGTGCTGCCGATCTTGTTGCCA
390 GGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
* *
13035716 CTACCCAT-GATCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
455 CTACCC-TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
* * * * *
13035780 AACGAGCGGAAGGGCAGGCAGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
519 AACGAGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * *
13035845 ATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCT
583 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
* *
13035910 TGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCAGGGCAAGACGACTCGTTTTC
648 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
13035975 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAATT
713 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * ** *
13036040 TTGGTCCCAAATTTGGTAGACGTGATCC-TGTATCCTTCTTGGCATGCACAAAAAAATTCAGCTA
778 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
13036104 AAAACTCGAAGTGTACAAGATTTTGTGAC
843 AAAACTCGAAGTGTACAAGATTTTGTGAC
*
13036133 CATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCT
1 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
13036197 CAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
66 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * * * * **
13036262 CCATGTACCAGCACCCATCCCACATCTTGTGCGCACAATCCCCC-ACACCCCGATTGCCAAAACC
131 CCAAGTACCAGCACCCATCACACATCATGTGCGCAC-ACCCCCCGCCCCCCCGATCGCCGGAACC
* * * *
13036326 CCAAAGCCGTCGGTCAGG---T-------T-CTCCGATGATGGTGCCCCGACGAAGAAAAATACG
195 CCAATGCTGTCGGTCAGGTTTTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATG
* * * * * *
13036380 ACACCAACACATTCTTGAGCCCAGCATGTG-TTGCCGTAACCCTCAGTCCGGTCTGATCTTAGAC
260 GCACCAACACATGCCTGAGCCCAGCATGTGCTT-CCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* * *
13036444 TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAA
324 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
** * * ** * ** *
13036509 AGGGGCGGGATGCGCAAGCTGGGGATCGACTGTATCCCCCTCTGCATGCTATCGATCCTGTTGCC
389 AGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* * * * *
13036574 GCAACCCTCGGTTTGGTCTGATCTTAGACTAGGAATGAACTCCT-TATGCCTAAGCCAACAGACG
454 GCTACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-CTGTATGCCTAAGCCAACCGACG
* * * *
13036638 AAACAAGCTGGTGGGCGGGCGTGCGGGCACTACGCCGGCCAGAGATACGGGATGCACAAGCCGTG
518 AAACGAGC-----GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
13036703 GATCGGTAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
578 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
13036768 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA--C-
643 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
13036830 ---TC-A-TTCTC-T-ATTTTT----C-----A----T---GA-----T----TTTTTTCGAAAG
708 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * *
13036863 GAGTTTTGGGCCCAAACATGGTAGACGTGATACTTGTATTTTTGTTGGCATGCACAAAAAAATTC
773 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
13036928 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
838 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * *
13036962 CATTTGGAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAGAATCT
1 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
13037027 CAAATGCTCTTTATGGGGGTGTGA
66 CAAATGCTCTTTAAGGGGGTGTGA
13037051 ACCAGCACCC
Statistics
Matches: 6981, Mismatches: 733, Indels: 561
0.84 0.09 0.07
Matches are distributed among these distances:
828 39 0.01
829 76 0.01
830 67 0.01
832 1 0.00
837 2 0.00
840 1 0.00
849 60 0.01
850 2 0.00
851 96 0.01
852 3 0.00
853 7 0.00
854 2 0.00
855 7 0.00
856 1 0.00
857 3 0.00
858 32 0.00
859 227 0.03
860 5 0.00
861 118 0.02
862 2 0.00
863 164 0.02
864 9 0.00
865 463 0.07
866 3 0.00
867 215 0.03
868 391 0.06
869 590 0.08
870 262 0.04
871 270 0.04
872 404 0.06
873 7 0.00
874 1 0.00
875 13 0.00
876 46 0.01
877 107 0.02
878 7 0.00
879 3 0.00
880 224 0.03
881 284 0.04
882 8 0.00
883 3 0.00
884 57 0.01
885 1 0.00
886 62 0.01
887 70 0.01
888 269 0.04
889 254 0.04
890 1 0.00
891 98 0.01
892 103 0.01
893 76 0.01
894 20 0.00
895 14 0.00
896 30 0.00
897 434 0.06
898 479 0.07
899 260 0.04
900 13 0.00
901 444 0.06
902 65 0.01
904 2 0.00
905 2 0.00
907 1 0.00
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (871 bp):
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCCCCCCGATCGCCGGAACCC
CAATGCTGTCGGTCAGGTTTTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGG
CACCAACACATGCCTGAGCCCAGCATGTGCTTCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
GGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
TACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
CGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGAC
Found at i:13038135 original size:26 final size:26
Alignment explanation
Indices: 13038104--13038156 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13038094 CTGGTATGAT
13038104 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13038130 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13038156 C
1 C
13038157 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13040795 original size:26 final size:26
Alignment explanation
Indices: 13040766--13040818 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13040756 TCGATCCGAT
13040766 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13040792 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13040818 C
1 C
13040819 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13041045 original size:904 final size:901
Alignment explanation
Indices: 13037232--13046296 Score: 11815
Period size: 905 Copynumber: 10.2 Consensus size: 901
13037222 CTGGTCCGAT
* *
13037232 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
13037297 CGACCAGAGGGGCGGGATGTGC-AGCCGGGGATCGGTTGGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * * * *
13037361 TGTTGCTGTAACCCTCGGTCCGATCCAATCTTAGAATGGGAATGAACTCCATATGCCTAAGCCAA
131 TGCAGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13037426 CCGACGAAACG-A--GCGG-GCGGACGGGCAGGCACTACGCCGGCCAGAGAGATGGGATGTGGAA
196 CCGACGAAACGAACGGCGGCGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
13037487 GCGGTGGATCGATAGGGTGGTATGTGGGTTTAAGCACATCTTCATATTTTTGCATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
13037552 TTTTTATGGCTTCTAAATACATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * *
13037617 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAATATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
13037682 CGAAAGGATTTTTGG-CCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAA
456 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAA
*
13037746 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
13037811 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
13037876 TTC-CTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACA
650 TTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
13037940 TCATGTGCGCACACCCCCCCCGGCTCCCCGATCGTCAGAACCCCAATGCCG-CGGTCAGGTTCTC
714 TCATGTGCGCACA-CCCCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** * * *
13038004 CGACAATAATCCGGTGATGGTGCCCCGACGAAGAAATAA-GCGGCAACAAACACATGCCAGAGCC
778 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA-AATGCGGC-ACCAACACATGCCCGAGCC
* **
13038068 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTATGATCTTAGACTGGGAATGAACTCCGTATG
841 CAGCATGTGCTGCCGCAACCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13038130 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACAAAACGAGCGTGCGGGAGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
13038195 CGGGCAAAAGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCT--GTG-T---G---C
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
13038251 T---GCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATCCCTAAGCCAA
131 TGCAGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
13038313 CCGACAAAACG-A--GCAGGC-GGG-TGGGCGGCCACTACGTCAGCCTGAGAAACGGGATGCGCA
196 CCGACGAAACGAACGGC-GGCGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
13038373 AGTCGTGGATCGATAGGGTTGTCGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
13038438 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
13038503 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
13038568 TCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
455 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAA
* * *
13038633 AACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTATCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
13038698 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTAC-CTGTAAGGGGGTGTG
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-TGCTCTTTAAGGGGGTGTG
13038762 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * ** * *
13038827 ATTATGTGTGCGCACCCCTCCCCCTCCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTTC
713 ATCATGTGCGCACACCCCT--CCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
13038892 TCCGGCGATGCTCTGGCGATGGTGCCTCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
776 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* *
13038957 CAGCATGTGATGCCGCAACCCTC-G--G-TCCGGTC-----C-------G-A-TCCG-AT-
841 CAGCATGTGCTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13038998 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGTTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
13039063 CAGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGGTCGGGT-CCCC-CT---T--T-ACG-TGC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
13039119 T--A-CCGCAACCCTCGGTCTTG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCAGCCGCAACCCTCGGTC-CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
13039180 ACTGACGAAACGAGCAGGCGAGC-GGG-CGGGTGGGCTCTACGCCGGCCAGAGAGACGGGATAAG
195 ACCGACGAAACGAAC-GGCG-GCGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
13039243 GAGGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
*
13039308 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
13039373 GACGACCCGTTTTCTATTTTTCACCATTTTTGAAACTTTCTGCGGTTC-AGGATGTTTTAAAATT
388 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATT
*
13039437 TTTTCGAAAGGCA-TTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
452 TTTTCGAAAGG-AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
* *
13039501 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTATGTGACCATTTGAAAAAAGTGTCCCA
516 -AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
13039566 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGT
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
13039631 GTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * **
13039696 CACATCATGTGCGGACACCCCCCACCGGCCCCCCGATCGTCGGAACCACAATGTCGTTGGTCAGG
710 CACATCATGTGC-G-CACACCCCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * * * *
13039761 TTCTCTGACGATGCTCCGACGACGGTGCCCCGAGGAAGAAAAATACGGCACCAACACATGCCCGA
773 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGA
* * * ** * *
13039826 GCCTAGCATGTGCTGTCGCAACCCTCAGTCTGATTTGATCTTAGATTGGGAATGAACTCCATATG
838 GCCCAGCATGTGCTGCCGCAACCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** *
13039891 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGAAGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
13039956 TGGCTAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTGCGTGCTGTCGATCA
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
13040021 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCAGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
13040086 CCGACGAAACGAGCAGGCGAAC-GGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
196 CCGACGAAACGAAC-GGCG-GCGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
13040149 AAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTACGTGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
13040214 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
13040279 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * *
13040344 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAGCCTTTTATTTTTGTTGGCATGCATAA
454 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAA
*
13040409 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
13040474 C-GAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 CAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13040538 AGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** *
13040603 ATCATGTGCGCACACCCCTCCTGCCCCCCG-TCACCGGAACCCCAATGCCGCCGGTCAGGTTCTT
713 ATCATGTGCGCACACCCCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
13040667 CGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCA
778 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
*
13040732 GCATGTGCTGTCGCAACCCTCGGCTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
843 GCATGTGCTGCCGCAACCCTCGG-TCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
13040792 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTCCGGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
** * * * *
13040857 CGGTTAGA-GGGTGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCT
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
13040921 TGCAGTCACAACCTTCGGTCCGATCCAATCTTAGACTGAGAATGAACTCCGTATACCTAAGCCAA
131 TGCAGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
**
13040986 CCGACGAAACGAACGGGCTGGCGGGCGACCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGC
196 CCGACGAAACGAAC-GGC-GGCGGG-GA-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
13041051 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACACGGCAAT
257 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
13041116 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
322 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** *
13041181 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATT
387 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * * *
13041246 TTTTTGGAAGGCA-TTTTGGCCCCAAACCTGGTAGACATGATCCTTATATTTTTGTTGGCATGCA
452 TTTTCGAAAGG-AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
*
13041310 TAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCC
516 -AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
13041375 ATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGT
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
13041440 GTGAGTTCTTGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * *
13041505 TACATCATGTGCGCACACCCCCCCGGCCCCCCGATTGCCAGAACCCCAATGCCGTCGGTCAGGTT
710 CACATCATGTGCGCACACCCCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* ** * * *
13041570 CTCCGACGATTCTTTGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAACACATGCCCGAAC
775 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGC
* * * *
13041635 CCAGCATTTGCTGCTGCAA-CC-C--TCG----G-TCTTACACTGGGAATGAACTCCGTAAG
840 CCAGCATGTGCTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
13041688 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * *
13041753 TGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
13041818 TGCTGCCACAACCCTCAGTTCGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCAGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
13041883 CCGACGAAACGAGCAGGCGAAC-GGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
196 CCGACGAAACGAAC-GGCG-GCGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
13041946 AAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTACGTGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
13042011 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * *
13042076 ATGACTCATTTTTTATTTTTCATGATTTTTGAATCTTTTTGCGGTTCGAGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
*
13042141 TT-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
454 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AA
13042205 AAAAATTCAGCTAAAAACTC-AGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
13042269 TTCAGACACTTTAATGACTACTGGCAGCAAACCTGCAAAATGTCAAATGCTCTTTAAAGGGGTGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
13042334 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
13042399 CATCATGTGCGTACACCCC-CCGGCCCCCCCGATTGTCGGAACCCCAATGCCGCCGGTCAGGTTC
712 CATCATGTGCGCACACCCCTCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * *
13042463 TCCGACGATGCTCCGACGATGGCGCCCAGGCGAAGAAAAATGCGGCACCAACAGATGCTCGAGCC
776 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* * *
13042528 CAGCATGTGCTGCCGCAACCCTTGGTCTAATCCGATCTTAGACTGGG-ATGAACACCGTATG
841 CAGCATGTGCTGCCGCAACCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13042589 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * ** * * * *
13042654 TGGCTAGAGGGGCGGGATATGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * **
13042719 TGCTA-CCACAACCCTCAGTTTGCTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGC-AGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
13042783 ACCGATGAAACGAGCGGTCGG-GCGGACGGCCAGGCACTACGTCGGCCAGAGAGACGGGATGTGC
195 ACCGACGAAACGAACGG-CGGCGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
13042847 AAGCCGTGGATCAATAGAGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
**
13042912 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATATGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
13042977 ACGACTCGTTTTCTATTTTTCACGA-TTTTCAAACTTTTTACGATTCAAGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* *
13043041 TTCGCAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTGTTTGGCATGCACA
454 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG-TTGGCATGCA-A
*
13043105 AAAAAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
517 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
13043170 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
13043235 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAACACCCATCGTA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * **
13043300 CATCATGTGTGCACACCCCTTTCCCTGGCCCGCTCGATCGTCGGAACCCCAATGCCGTAGGTCAG
712 CATCATGTGCGCACACCCC--T-CC-GGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * *
13043365 GCTCTCTG-CGAAGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCG
772 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCG
* *
13043429 AGCCCAACATGTGCTGCTGCAA-CC-C--TCG----G-TC-----C---G-AT---CT--G-AT-
837 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13043469 CTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACAAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* ** * * * *
13043534 AGGCCA-AGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGGTCACCCTCTGCATGCTACCGATC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
13043598 CTGCTGCCGCAACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCA
130 CTGCAGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
13043663 ACCGACGAAACG-A--GCGAGC-GGG-CAGACGGGCGCTACGCTGGCCAGAGAGACGGGATGCGC
195 ACCGACGAAACGAACGGCG-GCGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
13043723 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
13043788 CATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
13043853 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * * *
13043918 TTTGATATGAGTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
454 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AA
* * * *
13043983 ACAAATTCAGCTAAAAACTTGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
13044048 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
13044113 AGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGAAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * ** *
13044178 ATCCTCTGCACACACCCCTCCCGGCCCCCCCGATCGTTGGAACCCCAATGCCGCCTATCAGGTTG
713 ATCATGTGCGCACACCCCT-CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
** ** * * *
13044243 TCCGGTGATGCTCCGTTGATAGTGCCCCAACGAAGAAAAATGCGACACCAACACATGCCCGAGCC
776 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* * * * * *
13044308 CAGCATTTGCTGTCGCAACCCTTGGTCTGGTCTGATCCTAGACTGGGAATGAACTCCGTATG
841 CAGCATGTGCTGCCGCAACCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
13044370 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * ** * * * *
13044435 CGACCAGAGGGGCGAGATGCATAAGCCAGGGAT-GGACCGAGTCCCCCTCTGCGTGCTGTCGATC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGG-TCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * *
13044499 CTACTA-CCGCAACCCTCGATCTGAGCTGATCTTAGGCTGGGAATGAACTCGGTATGCCTAA-CT
130 CTGC-AGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC-
* * * * * * * *
13044562 GAACCGACGAAACGAAC-G-GGCAGGCGAGTGGGCGGGTAGTATGACAGCCAGAGAGACGGGATG
193 CAACCGACGAAACGAACGGCGGC-GGGGA-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
*
13044625 CGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
256 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
*
13044690 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGC
321 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
13044755 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTGTACGGTTTGAGATTTTTTAAAAT
386 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* * * * *
13044820 TTTTTCGAAAGCAATTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
451 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
* *
13044885 CAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCC
516 -AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
13044950 ATTTCA-AGCAATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
580 ATTTCAGA-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
13045014 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAAAATAAGGGCCAAGTACCAACACCCATC
644 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
13045079 GTACATCATGTGTGCACACCCCTTTCCCCGACCCGCTCGATCGTCGGAACCCCAATGCCGCAGGT
709 GCACATCATGTGCGCACACCCC--T--CCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGT
* * * *
13045144 CAGGCTCTCCG-TGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGC
769 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGC
* * * *
13045208 CTGAGCCTAGCATGTGCTGCCACAACCCTC-G--G-T-C---C-T-G--T-CG---G-A-T-C--
834 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGT
13045252 ---
899 ATG
* * * *
13045252 C-TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGAGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * *
13045316 CGGCCAGAGGGGTGGGATGCGCAAGTCGAGGATCGGTCGGGTCCCACTTTACGTGCTGCTGATCC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
13045381 TGCTA-CCGTAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 TGC-AGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * *
13045445 ACTGATGAAACG-A-----GCGGGTA--GGCGGGCACTACATCGGCTAGACAGACGGGATGCGCA
195 ACCGACGAAACGAACGGCGGCGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
13045502 AGCCGTGGATCAATAGGGTGGTAGGTGTGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * *
13045567 ATTTTTATGGCTTCTAAATTCATACGATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
13045632 CAACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTAAAA-TTTT
390 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
13045695 TC-AGAAGGAGTTTTGG-CCCAAACTTGGTGGACATGATCCTTGTATTTTTGTTGGAATGCACAA
455 TCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AA
* *
13045758 AAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTTACCATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
13045823 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTTAAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13045888 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
13045953 ATCATGTGCGCACACCCC-CCAGGCCCTCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
713 ATCATGTGCGCACACCCCTCC-GGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
13046017 TCCGGCGATGCCCCGGCGGTGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCC
776 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* *
13046082 TAGCATGTGCTGCCGCAACCCTCGGT-GCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
841 CAGCATGTGCTGCCGCAACCCTCGGTCG-A-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * **
13046144 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCATCCCATAAAACGAGCGTGTGGGTGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * * * * *
13046209 AGGCCAGAGGTGCGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCCTCTGCATACTGTCGATCT
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
13046274 TGCTGCTGTAACCCTCGATCCGA
131 TGCAGCCGCAACCCTCGGTCCGA
13046297 CTTGAGCGGG
Statistics
Matches: 7208, Mismatches: 776, Indels: 371
0.86 0.09 0.04
Matches are distributed among these distances:
864 1 0.00
865 3 0.00
866 44 0.01
867 79 0.01
868 159 0.02
869 5 0.00
870 246 0.03
871 22 0.00
872 588 0.08
873 198 0.03
874 40 0.01
875 74 0.01
876 188 0.03
877 294 0.04
878 6 0.00
879 28 0.00
880 153 0.02
881 168 0.02
882 5 0.00
884 7 0.00
885 4 0.00
886 1 0.00
887 297 0.04
888 245 0.03
889 73 0.01
890 51 0.01
891 9 0.00
892 365 0.05
893 443 0.06
894 7 0.00
895 5 0.00
896 96 0.01
897 130 0.02
898 80 0.01
899 26 0.00
900 171 0.02
901 994 0.14
902 60 0.01
903 6 0.00
904 481 0.07
905 1105 0.15
906 138 0.02
907 75 0.01
908 38 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCAGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAACGGCGGCGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:13042598 original size:25 final size:26
Alignment explanation
Indices: 13042564--13042615 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13042554 CTAATCCGAT
*
13042564 CTTAGACTGGG-ATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
*
13042589 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
13042615 C
1 C
13042616 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:13044382 original size:26 final size:26
Alignment explanation
Indices: 13044346--13044396 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13044336 GGTCTGATCC
*
13044346 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
13044372 TAGACTAGGAATGAACTCTGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
13044397 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:13046156 original size:26 final size:26
Alignment explanation
Indices: 13046118--13046170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13046108 GCAGTCTGAT
*
13046118 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13046144 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13046170 C
1 C
13046171 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13047010 original size:26 final size:26
Alignment explanation
Indices: 13046974--13047024 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13046964 GGTCTGATAG
*
13046974 TAGACTGGGAATGAACT-TCGTATGCT
1 TAGACTAGGAATGAACTCT-GTATGCT
13047000 TAGACTAGGAATGAACTCTGTATGC
1 TAGACTAGGAATGAACTCTGTATGC
13047025 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCTGTATGCT
Found at i:13050537 original size:26 final size:26
Alignment explanation
Indices: 13050501--13050551 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13050491 GGTCTGATAG
*
13050501 TAGACTGGGAATGAACT-TCGTATGCT
1 TAGACTAGGAATGAACTCT-GTATGCT
13050527 TAGACTAGGAATGAACTCTGTATGC
1 TAGACTAGGAATGAACTCTGTATGC
13050552 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCTGTATGCT
Found at i:13054065 original size:26 final size:26
Alignment explanation
Indices: 13054025--13054077 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13054015 CCGGTCCGAT
* *
13054025 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
13054051 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
13054077 C
1 C
13054078 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:13057499 original size:26 final size:26
Alignment explanation
Indices: 13057470--13057520 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13057460 TTGAGTTAGG
*
13057470 CATATGGAGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
13057496 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
13057521 GATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:13058352 original size:26 final size:26
Alignment explanation
Indices: 13058316--13058368 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13058306 GTTGACTTAG
13058316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13058342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13058368 G
1 G
13058369 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13058997 original size:846 final size:861
Alignment explanation
Indices: 13057366--13059892 Score: 3464
Period size: 846 Copynumber: 2.9 Consensus size: 861
13057356 TTGCGACAGA
* ** * *
13057366 AGGATCGACTGCACGCAGAGGGGGACCCAACCGATCCCGACTTGCGCATCCCGCCCCTCTGGCCG
1 AGGATCGACAGCACGCAGAGGGGGACCCGGCTGATCCCGACTTGCGCATCTCGCCCCTCTGGCCG
* * * *
13057431 ACTGAGCACCTGCACGCTCGTTTCAG-GGGTTGAGTTAGGCATATGGAGTTCATTCCCAGTCTAA
66 ACTGAGCACCCGCACGCTTGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13057495 TCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCACATGCTAGG
130 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
13057560 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
194 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
* *
13057625 ACCTGACCAATGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTTATGCGCACATGATGTG
259 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG-TATGCGCACATGATGTG
* * **
13057690 CGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTGGAGAACTCAC
323 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
13057755 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
388 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
13057820 GGGGAAACTTTTTTCAAATGCTCACAAAATCTTGTACCCTTCTAGTTTTTAGCTGAATCTTTTTC
453 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* *
13057885 TGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGAGGCCAAAACTCCTTTCGAAAAA
518 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
13057950 ATTTTGAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGACAAATAGAAAACGAGTCCTCTT
583 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
13058015 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
648 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
13058080 TTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
713 TTGGC-TCGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGC
13058144 GCATCCCGTCTCTCTGGCCGGAGTAGT-ACAT-GCCCG-CC-C-ATTCG-GATCAGCCT-G-A-A
776 GCATCCCGTCTCTCTGGCCGGAGTAGTCACATCGCCCGACCGCTATTCGCGATCAGCCTAGCATA
13058200 -G-GTT-A-C-G-G-C-A-GC
841 CGAGTTCATCAGAGACGACGC
* * * *
13058212 AGGATCGACAGCATGCAGAGGGGGACCTGGCTGATTCCTGGCTTGCGCATCTCGCCCCTCTGGCC
1 AGGATCGACAGCACGCAGAGGGGGACCCGGCTGA-TCCCGACTTGCGCATCTCGCCCCTCTGGCC
* * * *
13058277 GGCTCAGCACCCGTATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
65 GACTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
13058342 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGTTGGG
130 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
13058407 CTCAGGCATGTGTGGGTGCCGTATTTTTCTTTGCCGGGGCACCATCACCGGAGCATCACCGGAGA
194 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
* *
13058472 ACCTGACCGACGGCATTGGGGTT-CTAGCGATCGGGGGGGCCGGGGGGGTGTG-GCACATGATGT
259 ACCTGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGGTATGCGCACATGATGT
* *
13058535 GCAATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCG
322 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
13058600 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAC
387 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA-
* * *
13058664 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGTTGAATTTTTT
451 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
13058729 TATGCCTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGCTCCTTTCGAAA
516 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * *
13058794 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTC
581 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
* * *
13058859 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGACTTTACAAGCCATAGAAATGG
646 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
13058924 CATTGGCTCGCAGAAATATGAAGATGTGCCTAAACCGACCTACCATCCTATCGATCCACGACTTG
711 CATTGGCTCGCAGAAATATGAAGATGTGCCTAAACC-ACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * ** *
13058989 CGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGTCCGCTCGACCGCTTGTTTCGTCGGTTGGCTT
775 CGCATCCCGTCTCTCTGGCCGGAGTAGT-CACAT-CGCCCGACCGC-T-ATTCG-CGATCAGCCT
*
13059054 AGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGG
835 A-GCATAC-GAGTTCA-T-C-AG----AGA-C-GA-CGC
*
13059093 ATCGGATCGAGGGTTGCAGCACGCAGAGGGGGGCCCGG-TCGATCCCGACTTGCGCATCTCGCCC
1 A--GGATCGA------CAGCACGCAGAGGGGGACCCGGCT-GATCCCGACTTGCGCATCTCGCCC
* *
13059157 CTCTGGCTGACTGAGCACCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
57 CTCTGGCCGACTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * *
13059222 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCAC
122 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGACCGAGGGTTGCGGCAGCAC
* * * * *
13059287 ATGCTGGGCTCGGGCATGTGTTGGTGCTGCAATTTTCTTCGCTGAGGCACCATCGTCGGAGCATC
186 ATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATC
* *
13059352 GCCAGAGAACCTGACCGACGGCATTGGGCTTCCGACGATCAGGGGGGCCGGGGGGGTATGCGCAC
251 GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTATGCGCAC
*
13059417 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCAA
315 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
* * *
13059482 GAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGGTGCCAATAGCCATTAAAGTG
380 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
13059547 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATTTTCTACACTTTGAGTTTTTAGCTGAA
445 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
13059612 ATGTTTTGTGCATGCCAACAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
510 TTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * ***
13059677 CCGAAAAAATTTTAAAAAATCCCCAACAACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
575 TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* *
13059742 GTCATCTCGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
640 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * * * * *
13059807 AAATGGCATTGGAACACAAAAATATGAAGATTTGCCTAAACACACCTATCGCCCTATCGATCCAC
705 AAATGGCATTGGCTCGCAGAAATATGAAGATGTGCCTAAAC-CACCTACCACCCTATCGATCCAC
**
13059872 GGCTTGCATATCCCGTCTCTC
769 GGCTTGCGCATCCCGTCTCTC
13059893 CGGTTGGCGT
Statistics
Matches: 1471, Mismatches: 153, Indels: 71
0.87 0.09 0.04
Matches are distributed among these distances:
845 5 0.00
846 484 0.33
847 224 0.15
848 18 0.01
850 4 0.00
851 2 0.00
852 1 0.00
855 4 0.00
857 5 0.00
859 1 0.00
860 1 0.00
861 1 0.00
863 1 0.00
864 3 0.00
865 1 0.00
868 1 0.00
870 1 0.00
875 1 0.00
877 1 0.00
879 1 0.00
881 2 0.00
883 7 0.00
888 245 0.17
889 454 0.31
890 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (861 bp):
AGGATCGACAGCACGCAGAGGGGGACCCGGCTGATCCCGACTTGCGCATCTCGCCCCTCTGGCCG
ACTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTATGCGCACATGATGTGCAA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCTCGCAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGAGTAGTCACATCGCCCGACCGCTATTCGCGATCAGCCTAGCATACGAGT
TCATCAGAGACGACGC
Found at i:13059240 original size:26 final size:26
Alignment explanation
Indices: 13059204--13059256 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13059194 GTTGACTTAG
*
13059204 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13059230 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13059256 G
1 G
13059257 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13060142 original size:26 final size:26
Alignment explanation
Indices: 13060106--13060158 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13060096 GTTGACTTAG
*
13060106 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13060132 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13060158 G
1 G
13060159 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13060870 original size:26 final size:26
Alignment explanation
Indices: 13060834--13060886 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13060824 GTTGACTTAG
*
13060834 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13060860 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13060886 G
1 G
13060887 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13062128 original size:877 final size:874
Alignment explanation
Indices: 13060860--13065266 Score: 5700
Period size: 875 Copynumber: 5.0 Consensus size: 874
13060850 CCCAGTCTAA
* * * * *
13060860 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGCTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCATTCTAAGATTGGATCGAACTGAGGGTTGCGGTAGCACATGCTGGG
* * * * * * * *
13060925 CTTGGGTATGAGTTGGTGCAGCATTTTTCTTCGTCCAGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCACCGTC-GAGCATCG-C-AAGA
** *
13060990 ACCTGACTAGCGGCATTAGGGTTTCGACGATCGGGGGGCCGGGGTGGGTGTGCGCACATGATGT-
128 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGG-GGGTGTGCGCACATGATGTG
* *
13061054 CTGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
192 C-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
13061119 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTATCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
13061184 TGGGGATAATTTTTTCAAAGGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
13061249 GTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAATCCTTTCGTAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
*
13061314 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCT
451 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
13061379 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
13061444 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCTACGGCTTGC
581 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGC
* *
13061509 GCATCCTGCCTCTCTGGCCGACGTAGTGCCTGCCCGCCTGCCCACCCGCTCGTTTCGTCGGTTGG
646 GCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCTGCCCACCCGCTCGTTTCGTCGGTTGG
* * * * *
13061574 CTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTACGGTAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGCGGTAGCAGGAT
* * * * * *
13061639 CGGTAGCACACAGAGGGGTACTCGACCAATCCTCGGCTTACGCATCTCGCCCTTCTGGTCGGCTG
776 CGGTAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGCTG
*
13061704 AGCACCCTCACGCTTGTTTCGTGGGTTGACTTAG
841 AGCACCCGCACGCTTGTTTCGTGGGTTGACTTAG
* * *
13061738 GCATACGAAGTTCATTCCCATTCTAAGATTGGATCGAACTGAGGGTTGTGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCATTCTAAGATTGGATCGAACTGAGGGTTGCGGTAGCACATGCTGGG
*
13061803 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCACCGTCGAAGCATCGCCAAAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCACCGTCG-AGCATCG-C-AAGA
* ** *
13061868 ACCTGACCGGCGGCATTTGGGTTCC-AGCGATCGGGGCACCGGGGGGGTGTGCGGACATGATGTG
128 ACCTGACCGGCGGCATTAGGGTTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
13061932 GGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
13061997 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
13062062 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* *
13062126 GTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
** * * *
13062191 AATTTTAAAAAATATCGAACCG-CAAAATTTTCAAAAATCGTGAAAAATATAAAACGAGTCGTCT
451 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
** *
13062255 TGTTATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
13062320 ATTGGCACATAGAAATATGAAGATGTGCCTAAAGCCACCTACCAACCTATCGATCCACGGCTTGC
581 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGC
* * * *
13062385 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCACCTGCTCATTTCG-CTGGTTG
646 GCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCTGCCCACCCGCTCGTTTCGTC-GGTTG
* * *
13062449 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTACGGTAGAAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGCGGTAGCAGGA
* * * * **
13062514 TCGGTAG-ACACAGAGGGGTACTCGACCAATCCTCGGCTTATGCATCTCGCCCCTCTGGTCGGCT
775 TCGGTAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGCT
* *
13062578 GAGCACCCACACGCTTGTTTCGTGGGTTGAATTAG
840 GAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAG
* * * *
13062613 TCATATGGAGTTCATTCCCATTCTAAGATTGGATC-AGACTAAGGGTTGCGGTAGCACATACTGG
1 GCATACGGAGTTCATTCCCATTCTAAGATTGGATCGA-ACTGAGGGTTGCGGTAGCACATGCTGG
* * *
13062677 GCTCAGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGAAG
65 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCACCGTCG-AGCATCG-C-AAG
* * * * * *
13062742 AACCTGATCGACGACATTAGGGTTCCGGCCATCGGGGCGCCGGGGGGGTGTGCGCACATGATGTG
127 AACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
13062807 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
13062872 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
13062937 GGGGATACTTTTTTCAAAGGGTCATAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTATTTTA
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
13063002 TGCATGCCAACAAAAATACAAGGATCACATCTACTAAGTTTGGGGCCAAAAA-CCTTTCGTAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * *
13063066 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAATAGAAAACAAGTCCGTC
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG-AAAAATAGAAAACGAGT-CGTC
*
13063131 TTGCCATGAAACTTTCACAGCGAAGGCTT-AGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TTGCCATGAAAC-TTCAC-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
13063195 AGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCTATCGATCCACAGCT
578 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCT
*
13063259 TGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCG---G-----CCGCTCGTTTCGTCGGT
643 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCTGCCCACCCGCTCGTTTCGTCGGT
** * * * * * * *
13063312 TGGCTTAGGCATACGGAGTTCATTCCTTGCCTAAGATTGGACCAGACCGCGGGTTGCAGCAGCAG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGCGGTAGCAG
* * * * * *
13063377 GATCGATAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGTATCCCGCCCCTCTGG-CCG
773 GATCGGTAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGG
* * *
13063441 TTGAGTACCCGCACGCTCGTTTCGTGGGTTGACTTAG
838 CTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAG
13063478 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCA-T-T---C-TA---AG---ATT----G-----GATC-G---A-AC
* * * *
13063543 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGG
40 TGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGAGG
* * * * *
13063608 CACCA---TC--GC--CG-GAGAACCTAATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
105 CACCACCGTCGAGCATCGCAAGAACCTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCG
* * * *
13063665 GGGGGGTGTCCGGACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCT-CCC
169 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
13063729 CTCATCAAACCTCCAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
234 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
13063793 GTAGCCACTAAAGTGTCTGAAATGGAGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTC
299 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
13063857 CAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAACGATCACGTCTTCCAAGTTTA
364 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * ** ** * *
13063922 GGGCCAAAAATCCTTCCAAAAAAATTTTAAAAATTCTTGAACCGTAAAAAGTTTTGAAAATTGTA
429 GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
*
13063987 AAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
494 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
13064052 ATTTACAAGCTA-AAAAATGGCATTGGCAC--A-AAATATGAAGATGTGCCTAAACCCACCTACC
559 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
13064113 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTG--C-CC-GCCC
624 AACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCTGCCC
* * * * * **
13064174 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTATATGATCATA-CAAG
689 ACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAA-
* ** * * *
13064238 ACTGAGGGTTGCGGTAGCACGATCGACAGAATGCAGAGGGGGACTCGACCGATCCCCGGTTTGCG
753 ACTGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCG
* * * *
13064303 CATC-CCCCCCTCGGGCCGGCTGAGCACCCGCACG-TTCATTTCGTGGGTTGACTTAG
818 CATCTCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTT-GTTTCGTGGGTTGACTTAG
* * *
13064359 GCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAATCTAAGATCGACGGTTGC
1 GCATACGGAGTTCATTCCCATTCTAAG-AT--TG-G---A-T-CGAA-CT--GA--G--GGTTGC
* *
13064424 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCAACCGT
50 GGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACC-ACCGT
* *
13064489 C--G----G--AGAACCTGA-CGGCGGCATTGGGGTTCTGACGATCGGGGGGGGCC-GGGGGGTG
114 CGAGCATCGCAAGAACCTGACCGGCGGCATTAGGGTTCCGACGATC--GGGGGGCCGGGGGGGTG
***
13064544 TGCGCACATGATGTGCGATGGGTGCTGGTACTTTTTCCTTATATTGG-CCCCTATCCCTCATCAA
177 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
13064608 ACCTCAAGAACTCACACCCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCG
242 ACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
13064673 TGAAAGTGTCTGAAATGGGGGACACTTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTT
306 TTAAAGTGTCTGAAAT-GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
13064737 CTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAAACACAAGGATCATGTCTAGCAAGTTT-GGG
369 TTTAGCTGAA-TTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGG
*
13064801 CCAAAAA-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAA
432 CCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* *
13064865 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATT
497 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
13064930 TACAAGCCATAAAAAAGGCATTGGCACGTAGAAATATGAAGATGTGCCT-AACCCACCTACCACC
562 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAAC
* * * * * *
13064994 CTATCGATCCAC-ACTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCC-ACTCGCCCGC
627 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCT-GCCCAC
* ** *
13065057 CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
691 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACT
* * * * **
13065122 GAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAT
756 GAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCAT
* * * *
13065187 CACGTCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTT-G
821 CTCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAG
*
13065240 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCATTCTAAG
13065267 CATACGGAGT
Statistics
Matches: 3126, Mismatches: 306, Indels: 191
0.86 0.08 0.05
Matches are distributed among these distances:
864 3 0.00
865 128 0.04
866 43 0.01
867 4 0.00
868 2 0.00
869 2 0.00
870 9 0.00
871 160 0.05
872 58 0.02
873 103 0.03
874 38 0.01
875 645 0.21
876 501 0.16
877 366 0.12
878 368 0.12
879 142 0.05
880 66 0.02
881 369 0.12
882 42 0.01
883 3 0.00
885 2 0.00
886 4 0.00
888 2 0.00
891 66 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (874 bp):
GCATACGGAGTTCATTCCCATTCTAAGATTGGATCGAACTGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCACCGTCGAGCATCGCAAGAACC
TGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCTGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGCGGTAGCAGGATCGGTA
GCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCAC
CCGCACGCTTGTTTCGTGGGTTGACTTAG
Found at i:13063514 original size:26 final size:26
Alignment explanation
Indices: 13063478--13063530 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13063468 GTTGACTTAG
*
13063478 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
13063504 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
13063530 G
1 G
13063531 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:13064211 original size:881 final size:883
Alignment explanation
Indices: 13062614--13065378 Score: 3775
Period size: 881 Copynumber: 3.1 Consensus size: 883
13062604 TTGAATTAGT
* * * * * ** * * *
13062614 CATATGGAGTTCATTCCCATTCTAAGATTGGATCAGACTAAGGGTTGCGGTAGCACATACTGGGC
1 CATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGC
* * *
13062679 TCAGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGAAGAA
66 TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCA---TC---GC--CG--G-AGAA
* * * * *
13062744 CCTGATCGACGACATTAGGGTTCCGGCCATC-GGGGCGCCGGGGGGGTGTGCGCACATGATGTGC
120 CCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
13062808 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
13062873 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATG
* * * * *
13062938 GGGATACTTTTTTCAAAGGGTCATAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTATTTTAT
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGT
* * * * *
13063003 GCATGCCAACAAAAATACAAGGATCACATCTACTAAGTTTGGGGCCAAAAACCTTTCGTAAAAAT
380 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAACCTTCCGAAAAAAT
* * *
13063068 TTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAATAGAAAACAAGTCCGTCTT
444 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGT-AAAAAATAGAAAACGAGT-CGTCTT
* * *
13063133 GCCATGAAACTTTCACAGCGAAGGCTT-AGGGACCATTGTATGAATTTACAAGCCATAAAAATAG
507 GCCATGAAAC-TTCAC-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTA-AAAAATGG
13063197 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACAGCTTG
569 CATTGGCAC-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTG
13063261 CGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCG---G-CCGCTCGTTTCGTCGGTTGGCTT
632 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * * * *
13063318 AGGCATACGGAGTTCATTCCTTGCCTAAGATTGGACCAGACCGCGGGTTGCAGCAGCAGGATCGA
697 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGA
* * * * *
13063383 TAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGTATCCCGCCCCTCTGGCCGTTGAGTA
762 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGCTGAGCA
13063448 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
827 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
13063505 CATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGC
*
13063570 TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGAACCTAATCGACG
66 TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGAACCTGATCGACG
* *
13063635 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTCCGGACATGATGTGCGATGGGTGCTG
131 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
13063700 GTACTTGGCCCTTATGTTGGCCCCCT-CCCCTCATCAAACCTCCAGAACTCAC-CCCCCTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
*
13063763 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGAGACAC-TTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTT
* *
13063827 TTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * * *
13063892 AAAATACAACGATCACGTCTTCCAAGTTTAGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAATT
391 AAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAA-CCTTCCGAAAAAATTTTAAAAAAT
* ** *
13063957 CTTGAACCGTAAAAAGTTTTGAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTT
454 CCTGAACCGTAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
13064022 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAAAAAATGGCATTGGCAC-A-AAA
519 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAAAAAATGGCATTGGCACTAGAAA
13064085 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
584 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTCT
* * *
13064150 GGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTA
648 GGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * ** * * * * * *
13064215 TTCCCAGTATATGATCATACAAGACTGAGGGTTGCGGTAGCACGATCGACAGAATGCAGAGGGGG
713 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGG
* * * * *
13064280 ACTCGACCGATCCCCGGTTTGCGCATCCC-CCCCTCGGGCCGGCTGAGCACCCGCACGTTCATTT
778 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCACCCGCACGCTCGTTT
13064344 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
842 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* *
13064386 AATACGGAGTTCATTCCCAA-TCTAAGAT-----C-GA-C---GGTTGCGGCAGCACATGCTGGG
1 CATACGGAGTTCATT-CCAAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
13064440 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCAACCGTCGGAGAACCTGA-CGG
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACC-ATCGCCGGAGAACCTGATCGA
*
13064504 CGGCATTGGGGTTCTGACGATCGGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
129 CGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
***
13064568 CTGGTACTTTTTCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT-
* *
13064632 AAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCC-GTGAAAGTGTCTGAAATGGGGGAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACT-AAAGTGTCTGAAAT-GGGGAC
13064696 ACTTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTTGTGCA
320 AC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAA-TTTTTTTGTGCA
* * *
13064760 TGCCAACAAAAAACACAAGGATCATGTCTAGCAAGTTTGGGCCAAAAACCTTCCGAAAAAATTTT
383 TGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAACCTTCCGAAAAAATTTT
* * *
13064825 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCAT
447 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGCCAT
*
13064890 GAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAA-GGCATTGG
512 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-C-TAAAAAATGGCATTGG
*
13064954 CACGTAGAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCACACTTGCGCATCC
575 CAC-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGCATCC
* * *
13065018 CGTCTTTCTGGCCGGCGTAGTGCCCGCCCACTCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGG
639 CGTCTCTCTGGCCGGCGTAGTGCCTG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* *
13065083 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAG
700 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAG
** * * *
13065148 CACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCACGTCCCTCTGGTCGGCTGAGCACC
765 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CCGCTGAGCACC
*
13065213 CGCACGCTCGTTTCATGGGTTGACTT-GGCATACGGAGTTCATTCCCAGTCTAAG
829 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** *
13065267 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTGGGC
1 CATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGC
* * * * * *
13065332 TCGAGCATGTGTTGGTGCCACATTTCTCTTGGTTGGGGCACCATCGC
66 TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGC
13065379 TCGAGCATCA
Statistics
Matches: 1661, Mismatches: 166, Indels: 95
0.86 0.09 0.05
Matches are distributed among these distances:
870 5 0.00
871 158 0.10
872 63 0.04
873 97 0.06
874 8 0.00
875 175 0.11
876 89 0.05
877 88 0.05
878 141 0.08
879 131 0.08
880 69 0.04
881 430 0.26
882 44 0.03
883 3 0.00
885 2 0.00
887 2 0.00
888 3 0.00
890 3 0.00
891 150 0.09
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (883 bp):
CATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGC
TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGAACCTGATCGACG
GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAACCTTCCGAAAAAATTTTAAAAAATCC
TGAACCGTAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAAAAAATGGCATTGGCACTAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGCATCCCGTCTCTCTGGC
CGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGCTGAGCACCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:13064397 original size:26 final size:26
Alignment explanation
Indices: 13064361--13064412 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13064351 TGACTTAGGC
*
13064361 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
13064387 ATACGGAGTTCATTCCCAATCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
13064413 TCGACGGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGA
Found at i:13065269 original size:26 final size:26
Alignment explanation
Indices: 13065240--13065292 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13065230 GGTTGACTTG
13065240 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13065266 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13065292 G
1 G
13065293 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13066908 original size:11 final size:11
Alignment explanation
Indices: 13066879--13066910 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
13066869 ATCGGGGCAC
*
13066879 CATCGTCAGAT
1 CATCGTCGGAT
13066890 CATCGTCGGAT
1 CATCGTCGGAT
13066901 CATCGTCGGA
1 CATCGTCGGA
13066911 GAACCTGACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (11 bp):
CATCGTCGGAT
Found at i:13068936 original size:871 final size:874
Alignment explanation
Indices: 13065710--13069288 Score: 4803
Period size: 879 Copynumber: 4.1 Consensus size: 874
13065700 GATATGCACC
* * * * * *
13065710 CCCGCCCGCCCGCT-GTTTCATCGATTGGCCTAGGCATACGGAGTTCGTTCCCAGTCTAGGATCG
1 CCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * *
13065774 GACCGGACCGAGGGTTGTGACAGCAGGATCGGTAGGACGTAAAGGGGGACCCGATCGATCCCCGA
66 GACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * * *
13065839 CTTACGCATCCCACCCCTCCGGCCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGC
131 CTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGC
* * * *
13065904 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGACGGTTGCGGCAGAACATGCTGGGCT
196 ATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTGGGCT
* * * * *
13065969 TGGGCATGTGCTGGTACCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATC-ACAGAAGAA
261 CGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCAGGAGAA
* * * * * *
13066033 CCTAACCGGCGGCATTGGGGTTCTGGCTATCGGGGGGGCCAGGGTGGTGTGTGCGCACATGATAT
326 CCTAACCGGCGGCATTGGGGTT-TCGATATC-GAGGGGCCGGGGGGGT-TGTGCGCACATGATGT
* *
13066098 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCA
388 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
13066163 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTTTGAAA
453 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
*
13066228 TGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
518 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
13066293 GT-TATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAA
583 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * * * ** * *
13066356 AATTTTAACAAATCCCAAATCGCAAGAAGTTTTGAAAATCGTGAAAAATAGAGAACGAGTCGTCT
648 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
13066421 TGCCATGAACCTTCACGTGGAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAAAGGC
713 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
13066486 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
778 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
13066551 GCATCCTATCTCTCTGGTCGGCGTAGTGCCCG
843 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCG
* * *
13066583 CCCG----CCCGTTCGTTTCGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCG
1 CCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
13066644 GACCAGACCGAAGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
66 GACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * * *
13066709 CTTACGCATCCCACCCCACTGGCCGGCTAAGCGCCCGCACGCTTGTTTCTTGGGTTGACTTAAGC
131 CTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGC
* * * * * * *
13066774 ATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTGTGGCAGCACCTGCTAGGCT
196 ATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTGGGCT
* * * *
13066839 TGGGCATGTACTGGTGCTACATTTTTCTTCATCGGGGCACCATCGTCAGATCATCGTCGGATCAT
261 CGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCA---TC-G-----C--CGGAGCAT
* * * *
13066904 CGTC-GGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGGTGTGCGC
315 CGTCAGGAGAACCTAACCGGCGGCATTGGGGTTTCGA-TATCGAGGGGCCGGGGGGGTTGTGCGC
* **
13066968 ACATGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCTGCCTATCCCTCATCAAACCTC
379 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
13067033 GAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTTCAGGTTTGCTGCCAATAGCCATTAAAG
444 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAG
* *
13067098 TGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTG
509 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
13067163 AATTCTTTTGTGCATGCCAACAAAATTGCAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCC
574 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
* * * * *
13067227 TTCCAAAAAAATTTTAACAAATC-CCAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
639 TTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
*
13067291 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCAT
704 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
13067356 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCC
769 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
** * *
13067421 ACTTCTTGCGCATCGCATCTCTCTGGCCAGCGTAGTGCTCGCCTG
834 ACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTG--C-CC-G
* * *
13067466 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGCCTAAGATC-
1 CCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * * *
13067530 AAACTGAATCGAGGGTTACGGCAGCAGGATCGGTAGCACGCAGAGGGGGA-CCTATCCAATCCTC
66 GACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAT-CGATCCCC
* ** * * * * *
13067594 GGCTTGCGCATCCCGTCTCTCTGGTCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACATAA
129 GGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAA
*
13067659 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACC-AAGGTTGCGGTAGCACATGCTGGG
194 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTGGG
* * * * * *
13067723 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCTTCGGGGCACCATCGTCGAATG-GTCG-CTGGA
259 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGA-GCATCGTCAGGA
* * * **
13067786 GAACCTAACCGGTGGCATTAGGG-TTC-----C-AGCGATC-GGGGGG-TGTGCGCACATGATGT
323 GAACCTAACCGGCGGCATTGGGGTTTCGATATCGAGGGGCCGGGGGGGTTGTGCGCACATGATGT
* * *
13067842 GCGAT-GGTGGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAGAACTC
388 GCGATGGGT-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13067906 AAACCCCCTTAAA-AGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
452 ACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGA
13067970 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
516 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** *
13068035 TTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTTTTTCGAA
581 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
*
13068099 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAAATCATGAAAAATAGAAAACGAGTCG
646 AAAATTTTAAAAAATCTCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCG
13068164 TCTTGCCATG-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
710 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* **
13068228 GGCCTTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
775 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
13068293 TACGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCG
840 TGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCG
* *
13068328 CCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTGTAAGATTG
1 CCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
13068392 AACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAACACGTAGAGGGGGACCTGATCGATCCCCGG
66 GACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * * * * *
13068457 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTTACTTAGGC
131 CTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGC
** ** * * *
13068522 ATACAAAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCACATTCTGGGCT
196 ATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTGGGCT
* * *
13068587 CGGGCATGTGCTGGTGCCGCATTTTTCTTTACCGGGGCACCATCGCCGGAGCATCGTC-GGAGAA
261 CGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCAGGAGAA
* * * *
13068651 TCTGACCGACGGCATTGGGGTTTCGATAATCGAGGGGCCGGGGGGGTTGTGCGCACATGATGTAC
326 CCTAACCGGCGGCATTGGGGTTTCGAT-ATCGAGGGGCCGGGGGGGTTGTGCGCACATGATGTGC
* *
13068716 GATGGGAGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-AACTCACA
390 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13068780 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATT
455 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
* * *
13068845 GGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGT
520 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
13068910 GCATGCCAACAAAAATACAA-GATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCTGAAAAAA
585 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * *
13068974 TTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAAGAGTCGTCTTG
650 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * ** *
13069039 CCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATTAATTTACAAGCCATAAAAGGGGCAC
715 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
13069104 TGGCACGTAGAAATATGAAGATGTGGCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGC
780 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * **
13069169 ATCCCGTATCTCTGGCCGACGTAGTGGTCG
845 ATCCCATCTCTCTGGCCGGCGTAGTGCCCG
*
13069199 CCCGTCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
1 CCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* *
13069264 GACCAGACTGAGGGTTGCGGTAGCA
66 GACCAGACCGAGGGTTGCGGCAGCA
13069289 CATGCTGGGC
Statistics
Matches: 2380, Mismatches: 273, Indels: 107
0.86 0.10 0.04
Matches are distributed among these distances:
861 144 0.06
862 146 0.06
863 6 0.00
864 36 0.02
865 230 0.10
866 155 0.07
867 44 0.02
868 1 0.00
869 6 0.00
870 296 0.12
871 396 0.17
872 109 0.05
873 8 0.00
874 5 0.00
875 29 0.01
879 399 0.17
880 71 0.03
881 38 0.02
882 4 0.00
883 7 0.00
886 66 0.03
887 184 0.08
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
CCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
CTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGC
ATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCAGGAGAA
CCTAACCGGCGGCATTGGGGTTTCGATATCGAGGGGCCGGGGGGGTTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCATCTCTCTGGCCGGCGTAGTGCCCG
Found at i:13071036 original size:26 final size:26
Alignment explanation
Indices: 13070999--13071051 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13070989 GGTTGACTTG
* *
13070999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGACTAA
13071025 GCATACGAAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
13071051 G
1 G
13071052 AACGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:13071926 original size:26 final size:26
Alignment explanation
Indices: 13071889--13071941 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13071879 GTTGACTTAG
13071889 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
13071915 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13071941 G
1 G
13071942 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13072475 original size:892 final size:892
Alignment explanation
Indices: 13069233--13072580 Score: 5077
Period size: 890 Copynumber: 3.8 Consensus size: 892
13069223 GTTGGCTTAG
* *
13069233 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
13069298 CTTTGGCAA-GTGCTGGTGCCGCATTTTTCTTC-CTCGCGGCACCATCGCCGGAGCA-CGCCGGA
66 C-TCGGGAATGTGCTGGTGCCGCATTTTTCTTCGC-CGAGGCACCATCGCCGGAGCATCGTC--A
* *
13069360 GAACCTGACTGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGTACATGATGTG
127 GAACCTGAC---TGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
13069425 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCAC
189 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
13069490 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
254 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
13069555 GGGGACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
319 GGGGACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
13069620 TGCATGCCAACAAAAATACAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAAAAAA
384 TGCATGCCAACAAAAATACAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAAAAAA
13069685 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
449 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
13069750 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
13069815 TGGCACGCA-AAATAGGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
579 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGC
13069879 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG---CCCG---CTCGTTTCGTCGGTTGGCTTA
644 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCACCCGCCTCTCGTTTCGTCGGTTGGCTTA
* * *
13069938 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGT
709 GGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGTAGCAGGATCGGT
* * * * * *
13070003 AGCACATAGACGGGGGACTCGGACGATCTTCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAAC
773 AGCACGTAGA-GGGGGACCCGGACGATCCTCGGCTTGCGCATC-CCCCCCTCTGGCCGGCTGAGC
* *
13070068 GCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
836 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
13070125 CCGTACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
13070190 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACAATCGCCGGAGCATCATCAGAGA
66 CTCGGGAATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGTC--AGA
13070255 ACCTGACTGACGGTATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACTGAC---ATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGC
*
13070320 GGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
190 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
13070385 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-ACAGTAGCCATTAAAGTGTCTAAAATG
255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* *
13070449 GGGACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTT
320 GGGACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
13070514 GCATGCCAACAAAAATACAAGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAAAAAAT
385 GCATGCCAACAAAAATACAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAAAAAAT
* * * *
13070579 TTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCCTGC
450 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
13070644 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATT
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
13070709 GGCATGCAAAAATATGAAGATATGCCTAAACCCACCTACCA-CTCTATCGATCCATGGCTTGCGC
580 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCT-TATCGATCCACGGCTTGCGC
* * * * *
13070773 ATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCTCTCACCCGCCTGCTCATTTCATCGGTTGGTT
644 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CACCCGCCT-CTCGTTTCGTCGGTTGGCT
* * * * * * *
13070838 TAGGCATACCGAGTTCTTTCCCAGTCTAAGATCGGCCCGAACTGATGGTTGCGGTAGCAAGATCG
707 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCAG-ACCGAGGGTTGCGGTAGCAGGATCG
* * * *
13070903 GTAGCACGCAGAGGGGGACCC-GATCGATCCTCGGCTTACGCATCCCACCCTTCTGGCCGGCTAA
771 GTAGCACGTAGAGGGGGACCCGGA-CGATCCTCGGCTTGCGCATCCC-CCCCTCTGGCCGGCTGA
13070967 GCGCCCGCACGCTCGTTTCGTGGGTTGACTT-GGCATACGGAGTTCATTCCCAGTCTAA
834 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
13071025 GCATACGAAGTTCATTCCCAGACTAAGAACGGACCGGACCGAGGGTTGTGACAGTAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * *
13071090 CTCGGGAATGTGCTGGTGCTACATTTTTCTTCGCCGAGGCACTATCGTCGGAG-AAC--CTG-AC
66 CTCGGGAATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGTCAGAAC
* * * * * *
13071151 C-GAC-GGCATCGGGGTTCCAACGATTGGGGGGCCGGTGGGGTGTGTGCACATGATGTGCGGTGG
131 CTGACTGACATTGGGGTTCCGACGATCGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGG
13071214 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
13071279 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
13071344 ACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
325 ACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
13071409 CCAACAAAAATACAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAAAAAATTTTAA
390 CCAACAAAAATACAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAAAAAATTTTAA
*
13071474 AAAATCTCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
455 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
13071539 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
520 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
13071604 GCAGAAATATGAAGATGTGCCTAACCCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCG
585 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCG
* *
13071669 TCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCACCCGCCCTCTCGTTTCGTCGGATGGCTTAGGCA
650 TCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCACCCG-CCTCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
13071734 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGATAGTAGGATCGGTAGCA
713 TACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCA
* * * * *
13071799 CGTGGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCCCCCTCTGGCCGACTGAGTGCCCGC
777 CGTAGAGGGGGACCCGGACGATCCTCGGCTTGCGCATCCCCCCCTCTGGCCGGCTGAGCGCCCGC
* *
13071864 ACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
842 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
13071915 GCATACGGAGTTCATTCGCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
13071980 CTTGGGAATGTGCTGTTGCTGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGTC-G-AC
66 CTCGGGAATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGTCAGAAC
* *
13072043 C-GAC-GACATTGGGGTTCTGACGATCGGGGGGCCGGCGGGGTGTGCGCACATGATGTGAGATGG
131 CTGACTGACATTGGGGTTCCGACGATCGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGG
13072106 GTGCTGGTACTTAGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
195 GTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
13072170 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
** *
13072234 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
324 CACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
13072299 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATGC-TTACGAAAAAATTT
389 GCCAACAAAAATACAA-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCATT-CGAAAAAATTT
* * *
13072363 TAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
452 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * *
13072428 TGAAACATCACGTGAAGGCATAAGGGACCATTGTATTAATTTACAAGCCA-CAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
13072492 CACGTAGAAATATGAAAGATGTGCCTAAACCCACCTACCACC-TATCGATCCAC-GCTT--GCAT
582 CACGCAGAAATATG-AAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCAT
13072553 CCCGTCTCTCTGGCCGGCGTAGTGCCCG
646 CCCGTCTCTCTGGCCGGCGTAGTGCCCG
13072581 TCAGCCTCCG
Statistics
Matches: 2249, Mismatches: 172, Indels: 74
0.90 0.07 0.03
Matches are distributed among these distances:
888 35 0.02
889 187 0.08
890 611 0.27
891 160 0.07
892 432 0.19
893 330 0.15
894 207 0.09
895 1 0.00
897 1 0.00
898 4 0.00
899 2 0.00
900 129 0.06
901 73 0.03
902 77 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGAATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCGTCAGAAC
CTGACTGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
CTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAAAAAATTTTAAA
AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCACCCGCCTCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGTA
GAGGGGGACCCGGACGATCCTCGGCTTGCGCATCCCCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13073460 original size:26 final size:26
Alignment explanation
Indices: 13073424--13073476 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13073414 GTTGACTTAG
*
13073424 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13073450 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13073476 G
1 G
13073477 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13074345 original size:26 final size:26
Alignment explanation
Indices: 13074309--13074360 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13074299 GTTGACTTAG
13074309 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
13074335 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13074361 TATCGGACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13074788 original size:898 final size:892
Alignment explanation
Indices: 13072963--13076320 Score: 4217
Period size: 898 Copynumber: 3.8 Consensus size: 892
13072953 AAACTCCTTC
* * *
13072963 CGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTTAAAAAATCTCGAACCGCAAAAA
1 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
* * *
13073028 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAA
66 GTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
13073093 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGC
131 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
13073158 CCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
196 CCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * * * * *
13073223 CCCGCCCGCCCGCCTGCCCGTTTTTTTCGTCGGTTGGTTTAGGCATACGGATTTCATTCCCATTC
261 CCCG-CCTCCCGCCCGCTCG----TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * * *
13073288 TAAGATCAGACTGGATCGAGGGTTG-TGGTAGCAGGATCGATAGCACACAGAGGGGGACTCGGCC
321 TAAGATCAGACCAGATCGAGGGTTGCT-GTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTC
* * *
13073352 GATCCCCGGCTTGCAG-ATCCCGTCCCTCTGGCCGACTGAGCGCTCGCACGCTCATTTCGTGGGT
385 GATCCCCGGCTTGC-GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
13073416 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCA
449 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
13073481 GACCGGACCGAGGCTTGCGGCAGCACGTGCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTT
514 GACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TATTTTTCTT
* * *
13073546 CGTCGGGGCACCATCGCCG-G-AGCATC---G--CC-GA--A-GACATTGGGGTTCTGGCAATCG
578 CGTCGGGGCACCATCGCCGAGCATCATCGGAGAACCTGACGACGGCATTGGGGTTCCGGCAATCG
**
13073600 GGGGGCCGGGGGGTGTGCGCACATGATGTG-AGATGGGTGCTGGTACTTGGGCCTTATATTGGCC
643 GGGGGCCGGGGGGTGTGCGCACATGATGTGCA-ATGGGTGCTGGTACTTGACCCTTATATTGGCC
13073664 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
707 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
13073729 TGTTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAATTCTTG
772 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
13073794 TACACTTCGAGTTTTTACTGAATTCTTTTGTGCATGCCAAAAAAAATACAAAGATCA
837 TACACTTCGAGTTTTTGCTGAATT-TTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * *
13073851 CGTCTACCAAGTTTGGGACCAATACTCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
1 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
*
13073916 GTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
66 GTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
**
13073981 ACGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
131 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* *
13074046 CCAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
196 CCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* *
13074111 CCCGCCTGCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
261 CCCGCCT----CCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
13074176 AAGATC-GAACCAGACCAAGGGTTGCTGTAGCAGGATCGATAGCACGCAGAGGAGGACTCGGTCG
322 AAGATCAG-ACCAGATCGAGGGTTGCTGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCG
* * * * * * *
13074240 ATCCTCGGCTTACGCATCTCGCCCCTCCGGCCGACTGAGCGCCCGCACTCTTGTTT-AT-GGTTG
386 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * *
13074303 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAATATCGGA
451 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * **
13074368 CTAGATCAAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCTATTTTTCTTCAC
516 CCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTATTTTTCTTCGT
*
13074433 CGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCAATCGG
581 CGGGGCACCATCGCC-GAGCATCATCGGAGAACCTGA-CGACGGCATTGGGGTTCCGGCAATCGG
* * * *
13074498 GGAGCCGGGGGGGTGTGCGCACATGATTTGCAATGGGTGCTGGTAGTTGACCCTTATATTGGCAC
644 GGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGACCCTTATATTGGCCC
* *
13074563 CCTATCTCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
708 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
13074628 GCTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
773 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* ** *
13074693 AGACTAGGAGTTTTTCGCTGAATTTTTTGTGCATTCCAAAAAAAATACAAGGATCA
838 ACACTTCGAGTTTTT-GCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * * * *
13074749 TGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAA
1 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
* *
13074814 GTTTCAAAATTTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
66 GTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
** ** *
13074879 GTTACCATTGTATGAATTTACAAGATATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGC
131 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* *
13074944 CTAAACCCACCT---A--C-A---A--C-C--C-T----ATCTCGTCTCTCTGGCCGACGTAGTG
196 CCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * *
13074990 CCCG--T-CTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
261 CCCGCCTCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** * * * * * *
13075052 TCAGATCAGATTGAGTTTTACAGTAGCAGGATTGGCAGCACACAAAGGGGGACCCAG-CTGATCC
326 TCAGACCAGATCGAGGGTTGCTGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTC-GATCC
* * * * *
13075116 CCGACTTGCACATCTCGCCCCTCTGGCCGACTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTT
390 CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
13075181 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAG
455 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* *
13075246 ATCGA-GGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG-CTGCATTTTTCTTCGTCG
520 ATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCT--ATTTTTCTTCGTCG
* * * * * *
13075309 GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGTCGGCGGCATTGGGGTTCCGACGATCGGGGG
583 GGGCACCATCG-CCGAGCATCATCGGAGAACCTGACGACGGCATTGGGGTTCCGGCAATC-GGGG
*
13075374 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-AGCCCTTATATTGGCCCCC
646 GGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGA-CCCTTATATTGGCCCCC
* *
13075438 TATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACGGGTTTGC
710 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
13075503 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
775 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
13075568 ACTTCAAGTTTTTGGCTGAATTTTTTGGTGCATGCCAACAAAAAA-ACAAGGATCA
840 ACTTCGAGTTTTT-GCTGAATTTTTT-GTGCATGCCAA-AAAAAATACAAGGATCA
* * * *
13075623 CGTCTACCAATTTTGGGGCAAAAACTCCATCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAA
1 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
* ** * * *
13075688 GTTTCGAAAATAATGAAAAATAAAAAATGAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAA
66 GTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
13075753 GGGTCCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCACGTAGAAATATGAAGATGTGC
131 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* *
13075818 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
196 CCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
** * * ** *
13075883 --C-CCTCCCGCCCATTCATTTCGTCGAATGGCTTAGGCATAAAGAGTTCATTCCCAGACTAAGA
261 CCCGCCTCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * *
13075945 TCAGACTGGATCGAGGGTTGC-GACAGCAGGATTGACAGCACATAGAGGGGGACCCGATCGATCC
326 TCAGACCAGATCGAGGGTTGCTG-TAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCC
* * * * * * * *
13076009 CCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCTGTACGCTTGTTTCGTGGGTTGACTA
390 CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
13076074 AGGCATACGGAGTTCATTCCCAGTCTATG-AT-C-G-G---A----C---C---G----GA-C--
455 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * ** * * * *
13076115 --CGAGGGTTACGACAGCACATGCTGGGCTCTAGCATGTGCTGGTGCCGCATTTTTCTTTGCCAG
520 ATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TATTTTTCTTCGTCGG
* * * * *
13076178 GGCACCATCGTCGGAGCAT--T-GCGAAAACCTGACCGACGGCATTAGGGTTCCAGCGATCGGGG
584 GGCACCATCG-CCGAGCATCATCG-GAGAACCTGA-CGACGGCATTGGGGTTCCGGCAATC-GGG
*
13076240 GGGCCGGGGGGTGTGCGCACATGATGTGCGAA-GGGTGCTGGTACTTGGCCCTTATATTGGCCCC
645 GGGCCGGGGGGTGTGCGCACATGATGTGC-AATGGGTGCTGGTACTTGACCCTTATATTGGCCCC
13076304 CTATCCCTCATCAAACC
709 CTATCCCTCATCAAACC
13076321 AAGTTTGGGG
Statistics
Matches: 2163, Mismatches: 242, Indels: 151
0.85 0.09 0.06
Matches are distributed among these distances:
865 1 0.00
866 9 0.00
867 104 0.05
868 70 0.03
869 1 0.00
871 2 0.00
872 145 0.07
873 259 0.12
874 324 0.15
875 7 0.00
876 1 0.00
877 2 0.00
879 30 0.01
880 1 0.00
882 1 0.00
883 2 0.00
884 26 0.01
885 111 0.05
886 6 0.00
887 142 0.07
888 251 0.12
889 3 0.00
890 1 0.00
891 12 0.01
892 7 0.00
893 202 0.09
894 1 0.00
895 1 0.00
896 1 0.00
897 25 0.01
898 407 0.19
899 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
GTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
CCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
CCCGCCTCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCAGATCGAGGGTTGCTGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCC
CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
TCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTATTTTTCTTCGTCGGGG
CACCATCGCCGAGCATCATCGGAGAACCTGACGACGGCATTGGGGTTCCGGCAATCGGGGGGCCG
GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
Found at i:13075212 original size:26 final size:26
Alignment explanation
Indices: 13075183--13075235 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13075173 GTTGACTTAG
*
13075183 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13075209 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13075235 G
1 G
13075236 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13078157 original size:26 final size:27
Alignment explanation
Indices: 13078101--13078159 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
13078091 ACTCCTTCCG
**
13078101 AAAAAATTTTAAAAAATCCTGAACTAC
1 AAAAAATTTTAAAAAATCCTGAAAAAC
* * *
13078128 AAAAAGTTTT-AAAAATCGTGAAAAAT
1 AAAAAATTTTAAAAAATCCTGAAAAAC
13078154 AAAAAA
1 AAAAAA
13078160 CGAGTCGTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.61, C:0.08, G:0.07, T:0.24
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCCTGAAAAAC
Found at i:13078558 original size:26 final size:26
Alignment explanation
Indices: 13078529--13078581 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13078519 GTTGACTTAG
* * *
13078529 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATAAGGAGTTGACTCCCAGTCTAA
*
13078555 GCATAAGGAGTTGACTCCCAGTGTAA
1 GCATAAGGAGTTGACTCCCAGTCTAA
13078581 G
1 G
13078582 ATCGGACCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTGACTCCCAGTCTAA
Found at i:13078723 original size:183 final size:184
Alignment explanation
Indices: 13078515--13078882 Score: 499
Period size: 183 Copynumber: 2.0 Consensus size: 184
13078505 TGCTCGTTTG
* * *
13078515 GTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATAAGGAGTTGACTCCCAGTGTA
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCACTCCCAGTCTA
***
13078580 AGATCGGACCT-GACTGAGGGTTACGGTAGCACATGCT-GGCTCGGGCATGAACTTG-TGCCGCA
66 AGATCGGA-CTGGACTGAGGGTTACAACAGCACATGCTGGGCTCGGGCATGAAC-TGATGCCGCA
* * *
13078642 ATTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGCGGCTTTGGGGTTCC
129 ATTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC
* ** * *
13078698 GTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATGCGGAGTTCATTCCCAGTCTC
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCACTCCCAGTCTA
* * * ** * * *
13078763 AGATCGGATTGGACTGAGGGTTGCAACAGCACATTCTGGGCTCGGGCATGTGCTGATGTCGTATT
66 AGATCGGACTGGACTGAGGGTTACAACAGCACATGCTGGGCTCGGGCATGAACTGATGCCGCAAT
13078828 TTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC
131 TTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC
13078882 G
1 G
13078883 ACGATCGGGG
Statistics
Matches: 160, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
182 1 0.01
183 88 0.55
184 71 0.44
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.26
Consensus pattern (184 bp):
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCACTCCCAGTCTA
AGATCGGACTGGACTGAGGGTTACAACAGCACATGCTGGGCTCGGGCATGAACTGATGCCGCAAT
TTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC
Found at i:13078741 original size:26 final size:26
Alignment explanation
Indices: 13078712--13078761 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13078702 GTTGACTTAG
*
13078712 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13078738 GCATGCGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
13078762 CAGATCGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13079612 original size:26 final size:26
Alignment explanation
Indices: 13079582--13079634 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13079572 GTTGACTTAG
*
13079582 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
*
13079608 GCATACGCAGTTGATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
13079634 G
1 G
13079635 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:13082906 original size:26 final size:26
Alignment explanation
Indices: 13082877--13082929 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13082867 GTTGACTTAG
13082877 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
13082903 GCATACGGAGTTGATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13082929 G
1 G
13082930 ATCCGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13083247 original size:893 final size:898
Alignment explanation
Indices: 13080358--13084322 Score: 5038
Period size: 893 Copynumber: 4.4 Consensus size: 898
13080348 GGATCGAGGG
* * * *
13080358 GGCATTGGGGTTCCGGTGATC-GAGGGGTCAGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTG
1 GGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
13080422 GTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAC
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
13080487 AGCATTGGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * *
13080552 TTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGTTGAGTATTTTTGTGCATGCCAACA
196 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACA
13080617 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
261 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* ** ** * *
13080682 C-CTAAACTACAAAAAGTTTTAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCAAGAAACT
326 CTC-GAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
13080746 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCA
390 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-CA
* *
13080810 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACAGCTTGCGCATCCCGTCT
454 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
13080875 CCCTGGCCGACGTAGTGCCCG-C-CCGCCCACTCGCCTGCTCGTTTCATCGGTTGGCTTAGGCAT
519 CCCTGGCCGACGTAGTGCCCGCCTCCGCCCGCCCGCC-GCTCGTTTCATCGGTTGGCTTAGGCAT
* *
13080938 ACGGAGTTCATTCC-AGTCTAAGATCGGACCAAACCGAGGGTTGCGG-TAGCAGGATCGACAGCA
583 ACGGAGTTCATTCCTAGTCT-AGA-C-G----AATCGAGGGTTGTGGCTAGCAGGATCGACAGCA
* *
13081001 CATAGAAGGGGACTCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCG
641 CATAGAAGGGGACTCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCG
* * * * * * *
13081066 CACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATGCGAAGTTC
706 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTC
* * * * ** **
13081131 ATACCCAATCTAAGATCGGATCGGACCAAGATTTACGGTAGCACATGCTGGGCTCGGGCATGTGC
771 ATTCCCAGTCTAAGATCCGATCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
13081196 TGGTGCCGTATTTTTCTTTGCCAGGGCACCA---T-----CAT---CGGAGAACCTGACCGGC
836 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
* * *
13081248 GGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTG
1 GGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
13081313 GTACTTGGCCCTTATATTGG-CCCCTACCCCTCATCAAACCTTGAGAACTCACACCGCCTTAAAG
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
**
13081377 AGCATTCCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
** * * *
13081442 TTCAAATTATCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATGTTTTTGTACATGCCAACA
196 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACA
* *
13081507 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCG-AAAAATTTTAAAATAT
261 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * * *
13081571 CTCAAACCGTAAAAAGTTTTGAAAATCGTTG-AAAATAGAAAACGAGTCGTCTTGCCATGTATCT
326 CTCGAACCGCAAAAAGTTTTAAAAATC-ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * ** *
13081635 TCACGTAAAGGCTTAAGGGACCACTATATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAA
390 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
** * * * * *
13081700 AAATACAAAGATGTACCTAAACCCACTTACGACCCTATCGATTCACGGCTTGCGCATCCCATCTC
455 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * ** * *
13081765 TCTGGCCGGCATAACGCCTGCCCTCCCACCCGCCCG-C-C-CGTTTCATCGGTTGGCTTAGGCAT
520 CCTGGCCGACGTAGTGCCCG-CCT-CCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * *
13081827 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTG-CGATAGCAGGATC-AGCAGC
583 ACGGAGTTCATTCCTAGTCT-AGA-C-G----AATCGAGGGTTGTGGCTAGCAGGATCGA-CAGC
* * *
13081890 ACATAGAAGGGGACTCGATCGATCCCCGACTTGCGTATCCCACCCCTCTGGCTGGCTGAGCGCCC
640 ACATAGAAGGGGACTCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
* *
13081955 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGCATATGGAGTT
705 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTT
* * * * *
13082020 CATTCTCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
770 CATTCCCAGTCTAAGATCCGATCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTG
* * * * ** *
13082085 TTGGTGTCGCATTTCTCTTCGTCGGGGCACCATCGTCGGAGCGTCATCGTAGAACCTGACCGAC
835 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
* * * * * *
13082149 GGCATTGGGGTTCCAGCGAT-GGGGGGTTCGGAGGGGGTGTGTGCACATTATGTGCGATGGGTAC
1 GGCATTGGGGTTCCGGCGATCGGGGGG-GC-CAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
13082213 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
13082278 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
13082343 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
* * *
13082408 CAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATATTAAAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
13082473 ATCTCGAACCACAAAAAGTTTCAAAAATCATGAATAATAGAAAACGAGTCGTCTTGCCATGAAAC
324 ATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
13082538 TTCACGTGAAGGCTTAAAGGACTATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACATA
389 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * * * *
13082603 GAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTACGCATCCCGCCT
454 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* ** *
13082668 CCCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCACGCTCATTTTGTCGATTGGCTTAGGC
519 CCCTGGCCGACGTAGTGCCCG-CC-TCCGCCCGCCCGC-CGCTCGTTTCATCGGTTGGCTTAGGC
* * ** * *
13082733 ATATGGAGTTCATTCCTAGTCTA-A-G-ATC-A-GGTTGTGGCT-GCAAGATCGGTAGCACGTTG
581 ATACGGAGTTCATTCCTAGTCTAGACGAATCGAGGGTTGTGGCTAGCAGGATCGACAGCACATAG
* * * * * * *
13082792 AGGGGGACTTGGCCGATTCCC-AGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGAGCCCGCATG
646 AAGGGGACTCGACCGATCCCCGA-CTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
13082855 CTCGTTTCGTGTGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTGATTC
710 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTC
* * * * *
13082920 TCAGTCTAAGATCCGATCGGACCGAGGGTTACAACAGCATATGCTGGGCTCGAGCAAGTGCTGGT
775 CCAGTCTAAGATCCGATCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * ** *
13082985 GCCACAGTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGCCGGAGAACCTGACCGAC
840 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
* * *
13083044 GGTA-TGGGGTTCCGGTGATCGGGGGGGCCAAGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
1 GGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
13083108 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAA
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
13083173 AGCATTTGAGAGTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGACATGGGGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
13083238 TTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCCGAATGTTTTTGCGCACGCCAACA
196 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACA
** *
13083303 AAAATACAAGGATCACGTCTACCAAGTTCAGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAAT
261 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * *
13083368 CACGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
326 CTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* **
13083433 CACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
391 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* *
13083498 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATACCGTCTCT
456 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCC
* * * * *
13083563 CTGGTCGACGTAGTGCCTG-C-CCGCCCG--C-CCGCTCGTTTCGTCGGTTGGCTTAGGCACATG
521 CTGGCCGACGTAGTGCCCGCCTCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* **
13083623 GAGTTCATTCCCATTCTAAGATC-AGATCGAATCGATGGTTGTGGC-AGCAGGATCGACAGCATG
586 GAGTTCATT--C---CT-AG-TCTAGA-CGAATCGAGGGTTGTGGCTAGCAGGATCGACAGCACA
* * * * * * * * *
13083686 CAGAGGGGGACCCGACCGATCCCTGGCTTGCACATCTCGCCCCTCTAGCCGGCTGAGCGCCCGCA
643 TAGAAGGGGACTCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
13083751 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC-TATCCCAATCTAAGCATTCGGAGTTCA
708 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-TCCCAATCTAAGCATACGGAGTTCA
* * * * * **
13083815 TTCCCAGTCTAAGAT-CAAACACGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGC
772 TTCCCAGTCTAAGATCCGATC-GGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGC
* * * * * *
13083879 TGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATTGCCAGAGAACCTGATCGGC
836 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
* * *
13083942 GGCATTGGGGTTCCGACGATCGGTGGGGCCGGGGGGGTGTGCGCACATGATGTGC-AGTGGGTGC
1 GGCATTGGGGTTCCGGCGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGA-TGGGTGC
* * * *
13084006 TGGTACATGGCTCTTATAATGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
13084071 GGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
13084136 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAGTTTTTTTGTGCAAGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
* * * **
13084201 CAAAAATACAAGGATCTCATCTA-CAGAGTTTGGGGTCAAAACTCCTTTTGAAAAAATTTT-AAA
259 CAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * *
13084264 AATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCATCTTGCC
323 AATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
13084323 CGCCCGCTCG
Statistics
Matches: 2676, Mismatches: 341, Indels: 107
0.86 0.11 0.03
Matches are distributed among these distances:
885 36 0.01
886 1 0.00
887 2 0.00
889 241 0.09
890 470 0.18
891 62 0.02
892 4 0.00
893 475 0.18
894 15 0.01
895 204 0.08
896 44 0.02
897 54 0.02
898 191 0.07
899 79 0.03
900 260 0.10
901 36 0.01
902 50 0.02
903 209 0.08
904 200 0.07
905 1 0.00
906 2 0.00
907 2 0.00
908 38 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCC
CTGGCCGACGTAGTGCCCGCCTCCGCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
GAGTTCATTCCTAGTCTAGACGAATCGAGGGTTGTGGCTAGCAGGATCGACAGCACATAGAAGGG
GACTCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCCGATCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
Found at i:13083804 original size:26 final size:26
Alignment explanation
Indices: 13083775--13083827 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13083765 GTTGACTTAG
13083775 GCATACGGAGTTC-TATCCCAATCTAA
1 GCATACGGAGTTCAT-TCCCAATCTAA
* *
13083801 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13083827 G
1 G
13083828 ATCAAACACG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13084244 original size:900 final size:898
Alignment explanation
Indices: 13080358--13084322 Score: 5127
Period size: 890 Copynumber: 4.4 Consensus size: 898
13080348 GGATCGAGGG
** * * * *
13080358 GGCATTGGGGTTCCGGTGATC-GAGGGGTCAGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTG
1 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
13080422 GTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAC
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
13080487 AGCATTGGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * *
13080552 TTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGTTGAGTATTTTTGTGCATGCCAACA
196 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACA
13080617 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
261 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* ** * * *
13080682 C-CTAAACTACAAAAAGTTTTAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCAAGAAACT
326 CTC-GAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
13080746 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAG
390 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
13080811 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACAGCTTGCGCATCCCGTCTC
455 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
13080876 CCTGGCCGACGTAGTGCCC-GCCCGCCCACTCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATAC
520 CCTGGCCGACGTAGTGCCCTGCCCG--C-C-CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * *
13080940 GGAGTTCATTCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGTAGCAGGATCGACAGCACATA
581 GGAGTTCATTCCAGTCTAAGATCAGACCAAATCGAGGGTTGCGGCAGCAGGATCGACAGCACATA
* *
13081005 GAAGGGGACTCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACG
646 GAAGGGGACTCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * * * * *
13081070 CTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATGCGAAGTTCATAC
711 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATTCGGAGTTCATTC
* * * * ** **
13081135 CCAATCTAAGATCGGATCGGACCAAGATTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT
776 CCAGTCTAAGATC-GAACCGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
13081200 GCCGTATTTTTCTTTGCCAGGGCACCA---T-----CAT---CGGAGAACCTGACCGGC
840 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
*
13081248 GGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATAGGTGCT
1 GGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
13081312 GGTACTTGGCCCTTATATTGG-CCCCTACCCCTCATCAAACCTTGAGAACTCACACCGCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
**
13081376 GAGCATTCCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
** * * *
13081441 TTTCAAATTATCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATGTTTTTGTACATGCCAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAC
* *
13081506 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCG-AAAAATTTTAAAATA
260 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * *
13081570 TCTCAAACCGTAAAAAGTTTTGAAAATCGTTG-AAAATAGAAAACGAGTCGTCTTGCCATGTATC
325 TCTCGAACCGCAAAAAGTTTTAAAAATCG-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
13081634 TTCACGTAAAGGCTTAAGGGACCACTATATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCA
389 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* ** * * * * *
13081699 AAAATACAAAGATGTACCTAAACCCACTTACGACCCTATCGATTCACGGCTTGCGCATCCCATCT
454 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
13081764 CTCTGGCCGGCATAACGCCTGCCCT-CCCACCCGCCCGCCCGTTTCATCGGTTGGCTTAGGCATA
519 CCCTGGCCGACGT-A-G--TGCCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* **
13081828 CGGAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGCGATAGCAGGATC-AGCAGCAC
580 CGGAGTTCATT-CCAGTCTAAGATCAGACCAAATCGAGGGTTGCGGCAGCAGGATCGA-CAGCAC
* * *
13081892 ATAGAAGGGGACTCGATCGATCCCCGACTTGCGTATCCCACCCCTCTGGCTGGCTGAGCGCCCGC
643 ATAGAAGGGGACTCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGC
*
13081957 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGCATAT-GGAGTTC
708 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCAT-TCGGAGTTC
* * * *
13082021 ATTCTCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGT
772 ATTCCCAGTCTAAGATCGAACC-GACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGC
* * * ** *
13082086 TGGTGTCGCATTTCTCTTCGTCGGGGCACCATCGTCGGAGCGTCATCGTAGAACCTGACCGAC
836 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
* * * * *
13082149 GGCATTGGGGTTCC-AGCGAT-GGGGGGTTCGGAGGGGGTGTGTGCACATTATGTGCGATGGGTA
1 GGCATTGGGGTTCCGA-CGATCGGGGGG-GCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTG
*
13082212 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
13082277 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
128 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
13082342 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCA
193 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCA
* * *
13082407 ACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATATTAAAA
258 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * *
13082472 AATCTCGAACCACAAAAAGTTTCAAAAATCATGAATAATAGAAAACGAGTCGTCTTGCCATGAAA
323 AATCTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * ***
13082537 CTTCACGTGAAGGCTTAAAGGACTATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACAT
388 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * * *
13082602 AGAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTACGCATCCCGCC
453 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * ** *
13082667 TCCCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCACGCTCATTTTGTCGATTGGCTTAGG
518 TCCCTGGCCGACGTAGT----GCCC-T--GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
* * * * **
13082732 CATATGGAGTTCATTCCTAGTCT---A--AG-----ATC-A-GGTTGTGGCTGCAAGATCGGTAG
576 CATACGGAGTTCATTCC-AGTCTAAGATCAGACCAAATCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * * *
13082785 CACGTTGAGGGGGACTTGGCCGATTCCC-AGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGAGC
640 CACATAGAAGGGGACTCGACCGATCCCCGA-CTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* * * *
13082848 CCGCATGCTCGTTTCGTGTGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
704 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATTCGGAG
* * * * * * * *
13082913 TTGATTCTCAGTCTAAGATCCGATCGGACCGAGGGTTACAACAGCATATGCTGGGCTCGAGCAAG
769 TTCATTCCCAGTCTAAGAT-CGAACCGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATG
* * ** *
13082978 TGCTGGTGCCACAGTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGCCGGAGAACCTGACCGA
833 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA
13083043 C
898 C
* ** **
13083044 GGTA-TGGGGTTCCGGTGATCGGGGGGGCCAAGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
1 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
13083108 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAA
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
13083173 AGCATTTGAGAGTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGACATGGGGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
13083238 TTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCCGAATGTTTTTGCGCACGCCAACA
196 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACA
** *
13083303 AAAATACAAGGATCACGTCTACCAAGTTCAGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAAT
261 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * *
13083368 CACGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
326 CTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
13083433 CACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
391 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
13083498 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATACCGTCTCT
456 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCC
* * * *
13083563 CTGGTCGACGTAGTG-CCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCACATGGAGT
521 CTGGCCGACGTAGTGCCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* * * * * *** *
13083627 TCATTCCCATTCTAAGATCAGATCGAATCGATGGTTGTGGCAGCAGGATCGACAGCATGCAGAGG
586 TCATT-CCAGTCTAAGATCAGACCAAATCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGAAG
* * * * * * * *
13083692 GGGACCCGACCGATCCCTGGCTTGCACATCTCGCCCCTCTAGCCGGCTGAGCGCCCGCATGCTCG
650 GGGACTCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
13083757 TTTCGTGGGTTGACTTAGGCATACGGAGTTC-TATCCCAATCTAAGCATTCGGAGTTCATTCCCA
715 TTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-TCCCAATCTAAGCATTCGGAGTTCATTCCCA
* * * **
13083821 GTCTAAGATCAAACACGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
779 GTCTAAGATCGAAC-CGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * *
13083886 GTATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATTGCCAGAGAACCTGATCGGC
843 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
*
13083942 GGCATTGGGGTTCCGACGATCGGTGGGGCCGGGGGGGTGTGCGCACATGATGTGC-AGTGGGTGC
1 GGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA-TGGGTGC
* * * *
13084006 TGGTACATGGCTCTTATAATGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
13084071 GGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
13084136 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAGTTTTTTTGTGCAAGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
* * * **
13084201 CAAAAATACAAGGATCTCATCTA-CAGAGTTTGGGGTCAAAACTCCTTTTGAAAAAATTTT-AAA
259 CAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * *
13084264 AATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCATCTTGCC
323 AATCTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
13084323 CGCCCGCTCG
Statistics
Matches: 2670, Mismatches: 340, Indels: 121
0.85 0.11 0.04
Matches are distributed among these distances:
885 50 0.02
886 2 0.00
887 1 0.00
888 3 0.00
889 237 0.09
890 470 0.18
891 59 0.02
893 470 0.18
894 13 0.00
895 199 0.07
896 48 0.02
897 52 0.02
898 191 0.07
899 79 0.03
900 261 0.10
901 37 0.01
902 51 0.02
903 210 0.08
904 186 0.07
905 2 0.00
907 2 0.00
908 47 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCC
CTGGCCGACGTAGTGCCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
TCATTCCAGTCTAAGATCAGACCAAATCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGAAGG
GGACTCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATTCGGAGTTCATTCCCAGT
CTAAGATCGAACCGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
Found at i:13084546 original size:26 final size:26
Alignment explanation
Indices: 13084510--13084562 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13084500 GTTGACTTAG
* *
13084510 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
13084536 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
13084562 G
1 G
13084563 ATCAGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:13087226 original size:26 final size:26
Alignment explanation
Indices: 13087195--13087247 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13087185 GTTGACTTAG
13087195 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13087221 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13087247 G
1 G
13087248 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13088136 original size:26 final size:26
Alignment explanation
Indices: 13088100--13088150 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
13088090 TGACTTAGGC
13088100 ATACAGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
13088126 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
13088151 ATCGTATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Done.