Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 81 of 190
Found at i:13088152 original size:903 final size:904
Alignment explanation
Indices: 13084320--13089500 Score: 7229
Period size: 902 Copynumber: 5.8 Consensus size: 904
13084310 GAGTCATCTT
13084320 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
1 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
13084385 TAGACCGAGGGTTGTGGTAGCAAGATCGACAACACGTAGAGGGGGTCCCGATCGATCCCTGA-CT
66 CAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACTTAGAGGGGGACCCGACCGATCCCCGAGCT
* * * *
13084449 TGCGCATCCCGCCTCTTTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 TGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
13084514 ACGGAGTTCATTCCCGGTCTAAGCATACGGAGTTCAATCCCAGTCTAAGATCAGACCCGACC-AA
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAA
* * *
13084578 GGGTGGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTCCCGCATTTTTCTTCGTCGGGGCAC
261 -GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* *
13084643 CATCGTCGGA-CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
325 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGTCCG
* * *
13084707 GGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
389 AGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
13084772 CTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTACCC
454 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
13084837 GTAGGCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-
519 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
13084901 -A------A----AGTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCATGTTTG
584 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
13084955 GGGACAAAACTCCTTCCGAAAAAATTTTACAAAATCCTGAACCGTAAAAGGTTTCAAAAATCGTG
649 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
*
13085020 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG-CCATTGCATGA
714 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
13085084 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACA
779 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
13085149 ACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
844 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * **
13085210 GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGAC
1 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
13085275 CAAACCGAGGGTTGTGGTAGCAGGATTGGCAGCA-TGTAGAGGGGGACCCAACCGATCCCCG-GC
66 CAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACT-TAGAGGGGGACCCGACCGATCCCCGAGC
** * * * **
13085338 TTGTGCGTCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGTTA
130 TTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
13085403 TACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCAATCCCAGTCTAAGATCAGACCGGACCGA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * * * *
13085468 GGGTTGCGACAACACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGTAC
260 AGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
13085533 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGAT-GGGGGGTCCG
325 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGTCCG
*
13085597 AGGGGGTGTGTGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
389 AGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
13085662 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
454 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
13085727 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
519 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
13085792 GAGTTTTTAGCTGAGTTTTTTT-T-TATTGCCAACAAAAATGCAGGGATCATGTCTACCAAGTTT
584 GAGTTTTTAGCTGAATTTTTTTGTGCA-TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
***
13085855 GGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
648 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* * *
13085920 GAAAAATAAAAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGG-CCATTGCAT
713 GAAAAAT-AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
13085984 GAATTTACAAGCCATAAAAATGGGATTGGCACACAGAAATATGAAGATGTGCCTAAACCCATCTA
777 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
*
13086049 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCC
842 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * **
13086104 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGAC
1 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
13086169 CAGACTGAGGGTTGTGGTAGCATGATCGATAGCACGTAGACGGGGACCCGACCGATCCCC-AGCT
66 CAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACTTAGAGGGGGACCCGACCGATCCCCGAGCT
* * * *
13086233 TGCGCGTCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCAT
131 TGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
13086298 ACAGAGTTCATTCCCAG-CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGCA
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAA
* * * *
13086362 GGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCAGC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * *
13086427 ATCACAGGAGCATCGTCGGAGAACCTGACCAACGGCATTGGGGTTCCGACGAT-GGGGGATCCGA
326 ATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGTCCGA
13086491 GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
390 GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
13086556 TCATCAAACCTCAAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGTCAG
455 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
13086621 TAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
520 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * * * **
13086686 AGTTTGTAGCTGAGTTTTTTTGTGCAAGCTAACAAAAATACAAGGATCTCATCTACTGAGTTTGG
585 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
13086751 GGCCAAAACTCCTTTCGAAAAAATTTT-AAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGA
650 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
** * * *
13086815 AAAATAGAAAACAAGTCATCTTGCCATGAAACGTCTCGTGAAGGCTTAAGGGACCATTGTATGAA
715 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * ** *
13086880 TTTCCAAGCCATACAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCGACCA
780 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
13086945 CCCTATCGATCCACAGCTTGCGCGTCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCC
845 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* ** * * * *
13087005 GTCTACCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGAC
1 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * **
13087070 CAG-CCAGAGGGTTATGGTAGCAGGATCGACAGCA-TGCAGAGGGGGACCCGGTCGATCCCC-AG
66 CAGACC-GAGGGTTGTGGTAGCAGGATCGACAGCACT-TAGAGGGGGACCCGACCGATCCCCGAG
* * *
13087132 CTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATTGGTTGACTTAGGC
129 CTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
13087197 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * * * *
13087262 AAGGTTACGGCAGCACATACTGGGCTCAGGCATGTGCTGATGTCACATTTTTCTTCGTCGGGGTA
259 AAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
*
13087327 CCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCAGCGAT-GGGGGGTCC
324 CCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGTCC
* *
13087391 GAGGGGGTGTGTGCACATGATGTGCGATTGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATC
388 GAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
13087456 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGTTGCC
453 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
13087521 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
518 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
13087586 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTGT
583 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
** * * * *
13087651 GGGAACAAAAATCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCAT
648 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
*
13087716 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
713 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
13087781 AATTTACTAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAATCCACCCAC
778 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * **
13087846 CACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCATAGTGCCCGCCTACCC
843 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * *
13087908 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGTATACAGAGTTTATTCCCAGTCTAAGATCAGAC
1 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
** * * * *
13087973 CAGACCGAGGGTTGTGACAGCAGGATCGGCAGCACTTAGAGGGGGACCAGGCTGATCCCCGA-CT
66 CAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACTTAGAGGGGGACCCGACCGATCCCCGAGCT
13088037 TGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 TGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * **
13088102 ACAGAGTTCATTCCCAGTCTAAGTATACAGAGTTCATTCCCAGTCTAAGATC-GTATCGGATAGA
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGA
* * * * *
13088166 GGGTTGTGGCAGCAAATGCTGGGCTCGGGCA-GTGCTGGTGCTGCATTTTTCTTCATCGGGGCAC
260 AGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
** ** * ** * * *
13088230 CATCATCGGAGCATCACCGAAGAACCTGACCGGTGGCATTGGGGTTCTGGTGATCGGAGGG--CG
325 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTC-CGCGATCGGGGGGTCCG
*
13088293 -GGGGGTGTGCT-TACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
389 AGGGGGTGTG-TGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
13088356 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
453 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
13088421 AGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACTAAATCTTGTACACTT
518 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
13088486 TGAGTTTTTAGGCTGCATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATT
583 CGAGTTTTTA-GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * ** * *
13088551 TGCGG-CAAAACTCCTTCCAAAAAAACTTTAAAAAATCCCAAAACACAAAAAGTTTCGAAAATCA
647 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* *
13088615 TGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAT
712 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * * * *
13088680 GGATTTACAAGCCCTAAAAATAGCTTTGGCACACAAAAATATGAAGATGTGCCTAAACCCACTTG
777 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
13088745 CCACCCTATCGATCAATGGCATGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCT
842 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* *
13088808 GCCCGCCCGTCCACTCATTTCATCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCG----CTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
* * * *** * * *
13088873 GGACCGGACTGAGGGTTACAGTAGCAGGATCGGCAGCACATAGA-GGGGACCCGACCGAT-CCCT
62 AGACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACTTAGAGGGGGACCCGACCGATCCCCG
* *** * *
13088936 AGCTTGCACATCCCGTCCCTCTGGCCAATTGAGCGCCCGCACACTCGTTTCGTCGGTTGACTTAG
127 AGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * ** *
13089001 GCATACGGAGTTCATTCCCAATTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGAAC
192 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * *
13089066 TGAGGGTTGCGGCAGCAAATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
257 CGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** * * * * *
13089131 CACCATCGTTGGAGCATCGTTGGAGAACTTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGG
322 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGT
* * * **
13089196 CCG-GGGGGTGTGCGCACATGATGTGTGATGGGTACCAGTACTTGGCCCTTATATTGGCCCCCTA
386 CCGAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* ** * * *
13089260 TCGCTCATCAAACCTTGAGAACTCACACACCCTTAAAGAGCATTAGAGATTTTACTGGTTTGCTG
451 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
13089325 CCAGTAGCCCTTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
516 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * *
13089390 TTCGAGTTTTTAGTTGAATTTTTTTATGCATCCCAAAAAAAATACAAGCATCATGTCTACCAAGT
581 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
*
13089455 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACC
646 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACC
13089501 ACAAGCCATA
Statistics
Matches: 3833, Mismatches: 400, Indels: 100
0.88 0.09 0.02
Matches are distributed among these distances:
890 483 0.13
891 42 0.01
892 43 0.01
893 522 0.14
894 251 0.07
895 1 0.00
898 1 0.00
900 423 0.11
901 341 0.09
902 670 0.17
903 616 0.16
904 168 0.04
905 50 0.01
906 222 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACTTAGAGGGGGACCCGACCGATCCCCGAGCT
TGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAA
GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
ATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGCGATCGGGGGGTCCGAG
GGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
Found at i:13089053 original size:26 final size:26
Alignment explanation
Indices: 13089001--13089053 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13088991 GTTGACTTAG
* *
13089001 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
13089027 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13089053 G
1 G
13089054 ATCGGATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13089845 original size:25 final size:26
Alignment explanation
Indices: 13089811--13089860 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
13089801 GTTAACTTAG
13089811 GCATACGGAGTTCATTCC-AGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13089836 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATTCCTAGTCTA
13089861 GGATCGGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13090732 original size:26 final size:26
Alignment explanation
Indices: 13090702--13090754 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13090692 GTTGACTTAG
*
13090702 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
* *
13090728 GCATACGGTGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
13090754 G
1 G
13090755 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:13091563 original size:892 final size:895
Alignment explanation
Indices: 13089501--13094203 Score: 6200
Period size: 892 Copynumber: 5.3 Consensus size: 895
13089491 ATCTCGAACC
* *
13089501 ACAAGCCATAAAAATGGCATTGGCA-CCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCT
1 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * * *
13089565 TATCGATCCATGGCTTGCGCATCTCGTCTCTC-GATCGGCGTAGTGCCCATCCGCCCGGCCGCCC
66 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTG--C--CCG--C--CCGCTC
* * ** * *
13089629 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGA
123 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGA
* * * * * * * **
13089694 GGGTTACGACAGTAGGATCAGTAGCACACAGAGGGGGACCTGACCGATCCTCGGCTTGCTTATCC
188 GGGTTGCGACAGCAGGATTAGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCC
** * * *
13089759 TGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTC
253 CACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * ** ** * *
13089824 ATT-CCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAGGATCGGATTGGATTGAGGGTTATGAC
318 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGC
* * * * * * * *
13089888 AGCACATGTTGGGCTCGAGCATGTTCTAGTGTCGCATTTTTCTTCGCCGGGGCACTATCACCGGA
383 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGA
* * ** *
13089953 GCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCAATGATC-GGGGGGCCAAGGGGGTGTG
448 GCATCGACGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC-GGGGGGTGTG
* * * * *
13090017 CACACATGATGTGCGATAGGTGCTGGTGCTTTGCCCTTATATTGGCCCCCTAACCCTCATCAAA-
512 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
13090081 CTTGAGAACTCACAC-CCTTTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATT
577 CTCGAGAACTCACACACC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
13090145 AAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTAGGAGTTTTTA
641 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTA
* * *
13090209 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTATGTCTGCCCAGTTTGGGGCCAAAA
706 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
* * * *
13090274 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-ACAAAAAGTTTTGAAAATCGTGAAAAATAA
771 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGA-AAAAAGTTTTAAAAATCATGAAAAATAG
*
13090338 AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
835 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
13090399 ACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
1 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
13090463 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCTCATTT
66 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCTCGTTT
* * * * ** * *
13090528 CGTCGGATGGCTTAGGCATACAGAGTTCATTCCAAGTATAAGATTGGACTGGATTGAGGGTTGCA
131 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCG
* * * * * * * *
13090593 ATAGTAGGATTGGTAGCACGTAGAGGGGGACCCTG-TCGATCCCCGGCTTGTGCATCCCACCCTT
196 ACAGCAGGATTAGTAGCACGCAGAGGGGGACCC-GACCGATCCCCAGCTTGCGCATCCCACCCCT
* * * * *
13090657 CTGGCCGGCTGAGCGCTCGTACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA
260 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
13090722 GTCTAAGCATACGGTGTTCATTCCCAGTATAAGATCGGACCAGACCAAGGGTTGCGGCAGCACAT
325 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACAT
* *
13090787 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCGA
390 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGA
* ** * * *
13090852 CGGAGAACCCGACCGGCGATATTGGGGTTTCGATGATCGGGGGGGTCGGGGGGTGTGCGCACATG
455 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATG
** *
13090917 ATGTGCGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAA
520 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
13090982 CTCACACACCCTTAAAAAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATGAAAGTGTCT
585 CTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
**
13091047 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
650 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTT
* * * *
13091112 TTTTGTGCATCCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGGCAAAACTCCTTCCA
715 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
13091177 AAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
780 AAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
* * *
13091242 GTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGAACCAATGTATGAATTT
845 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
13091293 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
1 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
13091358 TATCGATCCACGGCTTGCGTATCTCGTCTCTC-GGTCGGCGTAGTGCCCGCCCGC-CGCTCGTTT
66 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCTCGTTT
* *
13091421 CATCGGTTGGC-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCG
131 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCG
* *
13091485 ACAGCAGGATTAGTAGCATGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGTATCCCACCCCTC
196 ACAGCAGGATTAGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCACCCCTC
* * * * *
13091550 TGGCAGACTGAGCGCTCGCACGCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAG
261 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
*
13091615 --T---C-TA--G-G---------A-TC---G---GG-CCGAACCGAGGGTTACGGCAGCACATG
326 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATG
** * * * *
13091654 CTGGGCTTTGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACTATCATCGGAGCATCGTC
391 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGAC
* *
13091719 GGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGGGGGTGTGCACACATGA
456 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * * *
13091784 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCACAAGAAC
521 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
13091849 TCACACATCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG
586 TCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
13091914 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTAGGAGTTTTTAGTTGAATTTT
651 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTT
* * * *
13091979 TTTATGCACGCCAACAAAAATACAAGGATCACGTCTGA-C-AGTTTGGGGCCAAAACTCCTTTCG
716 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * * *
13092042 AAATAATTTTAAAACAT-TCCGAGCCG-AAAAAGCTTCAAAAATTATGAAAAATAGAAAACGAGT
780 AAAAAATTTTAAAAAATCT-CGAACCGAAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
13092105 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
844 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
13092157 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATCTGCCTAAACCCACCTACCACCC
1 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* ** * *
13092222 TATCGATCCACAGCTTGCGCATCCCGTCTGTCTGGTCAACATAGAGCCCGCCCGCCCGCTCGCTC
66 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGT--AG--TGCCCGCCCGCTCGCTC
* * * *
13092287 GTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGATTGAGGAT
127 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGT
* ** * * *
13092352 TGTGGTAGCAGGATCAGTAGCACACAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACC
192 TGCGACAGCAGGATTAGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCACC
* * * * * * *
13092417 CCTCTGACCGGCCGAGTGCCCCCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCTTTC
257 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * *
13092482 CCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGACCGAGGGTTACCGTAGCA
322 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCA
* *
13092547 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAACACCGGAGCAT
387 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCAT
* * * * *
13092612 CGTCGGAAAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CTGGGGGTGTGCGCAC
452 CGACGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCAC
* *
13092676 ATGATCTGC-ATTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
517 ATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
13092740 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
581 AGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
13092805 GTCCGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
646 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGA
* *
13092870 ATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTAC
711 ATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * * *
13092935 TTCCGAAACAATTTTAAAAAATCTCAAACCGCAAAAGGTTTCAAAAATCGTGAAAAATAGAAAAC
775 TTCCGAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTTAAAAATCATGAAAAATAGAAAAC
* *
13093000 AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTT
840 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
13093056 ACAAGCCATAAAAATGGCATTGGC-TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
1 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * * *
13093120 TATCGATCCACAGCTTGCGCATCCAATCTCTCTGGCCGGTGTAGTGCCCGCCTGCCCGCCCGCAC
66 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTA------G--TGCCCGCCCGCTC
* * * ** *
13093185 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTC-GATCTAAGTTCGGACCAAACTG
123 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCGGATTG
* * * * * *
13093249 AGAGTTGC-AGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGCCAATCCTC-GTCTTGCGCA
187 AGGGTTGCGA-CAGCAGGATTAGTAGCACGCAGAGGGGGACCCGACCGATCCCCAG-CTTGCGCA
*
13093312 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
250 TCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* *
13093377 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGC
315 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC
* * *
13093442 AGCAGCACATGCTGGGTTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCA-C--CATC
380 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATC
* * *
13093504 ---G--T---CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGTG
445 GGAGCATCGACGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTG
13093561 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
510 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
13093626 ACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
575 ACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
13093691 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCAAGTTTTT
640 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTT
*
13093756 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAA
705 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
* * * * * *
13093821 AATCCTTCCGAAAGAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAA
770 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTTAAAAATCATGAAAAATAG
* * *
13093886 AAAACGAGTCGTCTTGCCTTGAAACTTCATGTGAAGGCTTAAGGGACCATTATATGAATTT
835 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
13093947 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
1 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
13094012 TATCAATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCC
66 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT----GCCCGCCCGCTCG--C
* * * **
13094077 ATTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCAA
125 --TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGA
* * * ** * * * *
13094142 GGGTTAC-AGTAGTAGGATCGGCAGCACGCAGAGGGGGACACGATCAATCCCC-GCTTGCGCAT
188 GGGTTGCGA-CAGCAGGATTAGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCAT
13094204 GCCGTCAGTC
Statistics
Matches: 3364, Mismatches: 368, Indels: 153
0.87 0.09 0.04
Matches are distributed among these distances:
864 173 0.05
865 48 0.01
866 348 0.10
867 5 0.00
869 10 0.00
870 19 0.01
871 159 0.05
873 2 0.00
874 1 0.00
876 1 0.00
877 2 0.00
879 1 0.00
880 1 0.00
883 1 0.00
884 2 0.00
886 3 0.00
887 1 0.00
888 12 0.00
889 1 0.00
890 4 0.00
891 397 0.12
892 755 0.22
893 105 0.03
894 248 0.07
895 90 0.03
896 215 0.06
897 159 0.05
898 190 0.06
899 123 0.04
901 3 0.00
902 285 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCG
ACAGCAGGATTAGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCACCCCTC
TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGAC
GGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
Found at i:13092501 original size:26 final size:26
Alignment explanation
Indices: 13092465--13092517 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13092455 GTTGACTTAG
* *
13092465 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
13092491 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
13092517 G
1 G
13092518 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:13093403 original size:26 final size:26
Alignment explanation
Indices: 13093367--13093419 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13093357 GTTGACTTAG
*
13093367 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13093393 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13093419 G
1 G
13093420 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13096103 original size:26 final size:26
Alignment explanation
Indices: 13096067--13096119 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13096057 CTGGTCTGAT
*
13096067 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13096093 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13096119 C
1 C
13096120 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13096481 original size:892 final size:894
Alignment explanation
Indices: 13094321--13101064 Score: 6901
Period size: 892 Copynumber: 7.6 Consensus size: 894
13094311 CTGATCCGAT
* ** *
13094321 CTTAGACTAGGAATGAAC-TCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCGTGTGC
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCATGAAACGAGCGTGC--G-G-GCGC
* * * *
13094385 TTAGCCGGCTAGAGGGGTGGGATGCGCAAGCTGGGGATTCGATCGGGTCCCCCTCTGCGTGCTAC
61 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCG-TCGGGTCCCCCTCTGCGTGCTAC
* ** * * * *
13094450 CCATCCTGCTGCCGGAACCCTC-AGTCCCATCCGATCTTAGACTGGGAATGAACTCTGTATGCCT
124 CAATCCTGCTATCGTAACCCTCGA-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
13094514 AAGCCATCCGACAAAATGAGCGGGCGGACGGGTC-GGCGAGTACTACGCCGGCCAGAGAGACGGC
188 AAGCCAACCGACGAAACGAGCGGGCGGACGGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * *
13094578 ATGCGCAAGCTGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGC
252 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
** * * * *
13094643 CAATGGTAATTTTATGGCTTCTAAATTCATAAAATGGTCCATTAAGCCTTCACGTGAAGTTTCAT
317 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
13094708 GGCAAGACGACTCGTTTTCTGTTTTTCATGATTTTT-AAACTTTTTACGGTTC-AGGATTTTTTT
382 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTA
* * *
13094771 AAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
446 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
13094836 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGT
511 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * * *
13094901 CCCTATTTCGGACACTTTAATGGCTACTGGTAGCAAACCTATCAAATCTCAAATGCTCTTTAAGG
576 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
13094966 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCC
641 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * *
13095031 ATCACACATCATGTGCGCAC-CCCCTCGGCCCCCCTGATCG-CTGGAACCCCAATGCCATC-GAT
706 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGTC-GGAACCCCATTACCGTCTGGT
* * *
13095093 CAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGC
769 CAGG---T-C--TGAT--T-CGACGATGGTGCCCCGTCGAAGAAAAATGCGGCACCAGCACATGC
* * * *
13095158 TCGAGCCCAGCATGTGCTGCTGCAACCC-TCGTTCTGGTCTGATCTTAGATT-GG---G-A----
825 CCGAGCCCAGCATGTGCTGCCGTAACCCTTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCC
13095213 --ATG
890 GTATG
* * * *
13095216 ---A-AC------T---C-T--TATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
13095265 CGACCAGAGGGGTGGCATGCGCAGGCTGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTACCAATCC
* * * * * * ** *
13095330 TGCTGTTGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
130 TGCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13095395 CCGACGAAACGAGCAGACGGACGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAA
195 CCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
13095460 GCCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
13095525 TTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** *
13095590 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
13095655 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATACTTTTATTTTTGTTGGCATGCACAAAA
455 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
13095720 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-AAAAAAGGTGTTCCCATTT
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-GTGTCCCCATTT
*
13095784 CAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** * ** **
13095849 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACTGGTGCCCATCGCACA
649 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
13095914 TCATGTGCGCGCACCCCCCGGAGCCCCCGATCGTCGGAACCCCATTACCGTC-GGTAAGGT-TG-
714 TCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCATTACCGTCTGGTCAGGTCTGA
* *
13095976 TTCGACGATGGTGCCCCGTCGAAGGAAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
778 TTCGACGATGGTGCCCCGTCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
13096041 GCCGTAACCCTTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
843 GCCGTAACCCTTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
* *
13096093 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATTAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
13096158 CGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGTTGGGTCACCCTCTGCATGCTATCGATCCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTACCAATCCT
* * ** * * *
13096223 ACTGTCACAACCCTCGATCCGATCTAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAAC
131 GCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
13096288 CGACGAAACGAGCGAGCAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
196 CGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
13096353 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
13096418 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACG
326 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** * *
13096483 ACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTGTGGTTTGGGATTTTTTAAAAATTTTTT
391 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTT
* * * * * **
13096548 -GTAAGGATTTTTGACCCAAAACTTGGTAGACATGATCCTTGTATTTTTGTTATCATGCACAAAA
455 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
13096612 AAATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *** * *
13096677 AGACACTTTAATGGCTACTGGCAGCAAACCTGT---ATCCCTAAATCAACCCACGAAACGAGCGT
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAAT--GCTC-TTTAA-GGGGGT
** * * ** * ** ** * * ** ***
13096739 ACGGGTGCTC-A-GTCGGCCA-GAGAGG-CAGGATG-C---ATAA--GCCGGGGATC-GGTCGGG
645 GTGAGTTCTCAAGGTTTG--ATGAG-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *** * * * * * * * ** * *
13096793 TC-CCCTTCTATGTGC-TAC-CGATCCTGCTGCCACAACCCTCGG---TCCGGT-CTGATCTTAG
707 TCGCACATC-ATGTGCGCACACCCCCCGGC-CCCCCGATCGTCGGAACCCCATTACCG-TC-TGG
* * ** * * * ** *
13096851 ACTGGGAATGAACTTCG--TATGCCTAAGCCAACCGAC-AA-AACGA-GCGG-ACGGGCGGGCAC
768 TC-AGGTCTG-A-TTCGACGATG-GT--GCC--CCGTCGAAGAAAAATGCGGCAC---C-AGCAC
* * * * * * ** ** * * * * *
13096910 -TACACCG-GCCAAAGAGACGGGAT-ATGTAACTTTTTACGATTCAAGAT-T--TTTTAAAATTT
821 ATGC-CCGAGCC-CAG-CATGTGCTGCCGTAAC-CCTT-CG-GTC-TGGTCTGATCTT-AGA-TT
**** *** *
13096969 TTTCA-GAA-GGAGTTTTGG
877 GGGAATGAACTCCG-TAT-G
** * * * * * ******* ** ***
13096987 CCCCAAACTTGGTA-G-ACGT-G-AT-CCT-TGTTTTTTTGTTGGCACGCA-CAAAACGGGCGCT
1 -CTTAGACTGGGAATGAACTTCGTATGCCTAAG-TCAACCCATGAAACG-AGC-GTGCGGGCGCT
* * * * * ** * *
13097045 CAGTCGGCCAGAGGGGCAGGATGCACAAGACAGGGATCGGTCGGGTCTTCCTCTGCGTGCTGCTA
62 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTACCA
* * * * * *
13097110 ATCCTACTATCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAAAGAACTTCGTATGCCTAAG
126 ATCCTGCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * * *
13097175 CCAACCGATGAAACGAGCGGGCAAACGGGCGGGCGGGCGCTATGTCGGCCAGAGAGACGGGATGC
191 CCAACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * *
13097240 GCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTACGTGCCAAT
256 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
13097305 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
321 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
13097370 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATT
386 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * *** *
13097435 TTTTTGGAAGGAGTTTTGGTCCCAAACAAAGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC
451 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
13097500 AAAAAAAATTCAGCTAAAAAATCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
516 -AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
13097565 ATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
** *
13097630 GTGAGTTCTTGAGG-TT--T----GAT-----G---ATATAAGGGCCAAGTACCAGCACCCATCA
645 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
13097680 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCG-CTGGTCAGG
710 CACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCCATTACCGTCTGGTCAGG
* * *
13097744 TTCTCCGGTGATGCTCCGATGATGGTGCCCCGAT-GAAGAAAAATGCGGCACCAGTACATGCCCA
773 ---T-C--TGAT--T-CGACGATGGTGCCCCG-TCGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * *
13097808 AGCCCAACAGGTGCTGCCGTAACCCTT-GGT-TCGGTCTGATCTTAGACTGGGAATGAGCTCCGT
828 AGCCCAGCATGTGCTGCCGTAACCCTTCGGTCT-GGTCTGATCTTAGATTGGGAATGAACTCCGT
13097871 ATG
892 ATG
* * *
13097874 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
13097939 CAGCCAGAGGGGCGAGATTCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGTGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTACCAATCC
* * * * * *
13098004 TGCTATCGTAACCCTCGGTCCGATGTGATCTTATACTAGGAGTGAACTCCGTATGCCTAAGCGAA
130 TGCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13098069 CCGACGAAACGAACGGGCGGGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
195 CCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
13098134 GCCGTGGATCGCTATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
13098199 TTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGTCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* **
13098264 GACTCGTTTTCTA-TTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * *
13098328 CGGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCCCAAAG
455 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
13098393 AAATTCAGCTAAAAATTCGAAGTGTACAATATATTGTGACCATTTCAAAAAAGTGTCCCTATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
13098458 AGACACTTTAATGGCTAATGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAA
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
13098523 TTCTCAAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGAACCCATTGCACAT
650 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
13098588 CATGT--GCACA---CAC-TCCCCCCGATCGCCGGAACCCCAATT-CCG-CTGGTCAGGTTCTCT
715 CATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCC-ATTACCGTCTGGTCAGG---TCT
* * * *
13098645 GGCGATGCTCCGATGATGGTGCCCCCGT-GAAGAAAAGTGCGGCACCAGCACTTGCCTGAGCCCA
776 ---GAT--T-CGACGATGGTG-CCCCGTCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
13098709 ACATGTGCTGCCGCAACCC-TCGGTCTGGT-TCGATCTTAGATTGGGAATGAACTCTGTATG
834 GCATGTGCTGCCGTAACCCTTCGGTCTGGTCT-GATCTTAGATTGGGAATGAACTCCGTATG
* * *
13098769 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCCGACGCTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
13098834 CGACCAGAGGGGCGAGATGCGCAAG-CGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTACCAATCC
13098898 TGCTATCGTAACCCTC-AGTCC-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
130 TGCTATCGTAACCCTCGA-TCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * ** * *
13098961 AACCGATGAAATGAGCGGGC-GAGCGGGCAGGCGGGCACTACATCAGCCAGAGAGATGGGATGCG
193 AACCGACGAAACGAGCGGGCGGA-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
13099025 CAAGCCGTGGATCGATCGGGT-GAAGGGTGGATTTAGGCACATCTTCATATTTCTACATGCCAAT
257 CAAGCCGTGGATCGATAGGGTGGTA-GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* *
13099089 GCCATTTTGATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
321 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * * * *
13099154 GGACGAATTGTTTTCTATTTTTCACTA-TTTTCAAAATTTTTACGGTTCGGGATTTTTTAAAATT
386 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * *
13099218 TTTTCGGAAGGAGATTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGTGA
451 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-CA
* * * *
13099283 AAAAAAAATTCAGGTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCC
515 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
13099348 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
580 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* **
13099413 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAATCATCG
645 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
13099478 CACATCATGTGCGCACACCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-AGTCAGG
710 CACATCATGTGCGCACACCCC-CCGG-CCCCCCGATCGTCGGAACCCCATTACCGTCTGGTCAGG
** * * ** *
13099542 TTCTCCGGCGATGCTCCGGGGTTGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCTGA
773 -TCT-----GAT--T-CGACGATGGTGCCCCGTCGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * *
13099607 GCCCAGCATGTGCTGACGCAA-CCTTCGGTCTGATCTGAT-TCTAGATTGGGAATGAACTCCATA
829 GCCCAGCATGTGCTGCCGTAACCCTTCGGTCTGGTCTGATCT-TAGATTGGGAATGAACTCCGTA
*
13099670 TC
893 TG
* * *
13099672 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * ** ** *
13099737 CGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCCCTCTATGTGCTGTCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTACCAATCC
* * * * * * *
13099802 TGCTGTCATAACCCTCAATCTGGTCTGATCTTAGGCAT-GGAATGAACTCCGTATACCTAAGCCA
130 TGCTATCGTAACCCTCGATCCGATCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
13099866 ACCGATGAAACGAGTGGGTGGACGGGCGGGTGGGCACTACGCCGGCAAGAGAGTCGGGATGCGCA
194 ACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ** * *
13099931 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATGTCTTCATATTTCTGCATTCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
13099996 ATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
13100061 TGACTCGTTTTCTTTTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
13100126 TCGGAAGGAGTTCTGGCCCCAAAC-AGCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
454 TCGGAAGGAGTTTTGGCCCCAAACTTG-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
13100190 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
13100255 TCAGACACTTTAATGGCTACTAGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13100320 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCACAC
648 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * *
13100385 ATCATGTGCGAACACCCCCCGGCCCCCCGATCGTCAAAACCCCAATGCCACCGATCAGGTTCTCC
713 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCC-AT--TACCG-TCTGG---T-C
* * * *
13100450 AGTGT-TGCTCCGACAATGGTGCCCCGGT-GAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
770 AG-GTCTGATTCGACGATGGTGCCCC-GTCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* ** * *
13100513 AACGCGTGCTACCGTAA-CC--C--T-TGGTC----C--------GG--T----T-C-AAT-
833 AGCATGTGCTGCCGTAACCCTTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
* * *
13100548 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
13100613 CGGCCAGAAGGGCGAGATGCACAAGCCAGGGATCCGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT-CGTCGGGTCCCCCTCTGCGTGCTACCAATCC
* * * * * *
13100678 TGCTACCGCAACCCTC-AGTCCGATCTAATCTTAGACTGGTAATGAACTCCATATGCCTAAGTCA
130 TGCTATCGTAACCCTCGA-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * *
13100742 ACCGATGAAATGAGCGGACAGG-CGGGCGGGCTAGCACTACGTCGGCCAAAGAGACGGGATGCGC
194 ACCGACGAAACGAGCGGGC-GGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
13100806 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * *
13100871 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAAGGTAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
13100936 ACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGA-GGTTCCAGATTTTTTAAAATAT
388 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTTAAAAT-T
* **
13101000 TTTT-GGAAGGAGGTTTGGTACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
451 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
13101064 A
516 A
13101065 TGCCTGAGCC
Statistics
Matches: 4888, Mismatches: 749, Indels: 443
0.80 0.12 0.07
Matches are distributed among these distances:
865 66 0.01
866 23 0.00
867 2 0.00
868 1 0.00
869 2 0.00
870 1 0.00
871 1 0.00
873 2 0.00
874 283 0.06
875 310 0.06
876 472 0.10
877 22 0.00
878 1 0.00
879 31 0.01
880 4 0.00
881 11 0.00
882 2 0.00
883 8 0.00
884 26 0.01
885 16 0.00
886 23 0.00
887 29 0.01
888 149 0.03
889 124 0.03
890 334 0.07
891 110 0.02
892 844 0.17
893 217 0.04
894 384 0.08
895 429 0.09
896 15 0.00
897 11 0.00
898 1 0.00
900 3 0.00
901 9 0.00
902 86 0.02
903 249 0.05
904 474 0.10
905 103 0.02
906 2 0.00
907 1 0.00
910 2 0.00
911 4 0.00
912 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTACCAATCCT
GCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCATTACCGTCTGGTCAGGTCTGATTC
GACGATGGTGCCCCGTCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
GTAACCCTTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
Found at i:13097884 original size:26 final size:26
Alignment explanation
Indices: 13097848--13097900 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13097838 TCGGTCTGAT
*
13097848 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13097874 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13097900 C
1 C
13097901 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13098772 original size:26 final size:26
Alignment explanation
Indices: 13098743--13098795 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13098733 CTGGTTCGAT
*
13098743 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
13098769 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13098795 C
1 C
13098796 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:13100041 original size:904 final size:900
Alignment explanation
Indices: 13097037--13101062 Score: 5193
Period size: 904 Copynumber: 4.5 Consensus size: 900
13097027 ACGCACAAAA
* * * **
13097037 CGGGCGCTCAGTCGGCCAGAGGGGC-AGGATGCACAAGAC-AGGGATCGGTCGGGTCTTCCTCTG
1 CGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTG
* * * * *
13097100 CGTGCTGCTAATCCTACTATCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAAAGAACTTCG
64 CGTGCTGC-AATCCTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
** * *
13097165 TATGCCTAAGCCAACCGATGAAACGAGCGGGCAAACGGGCGGGCGGGCGCTATGTCGGCCAGAGA
128 TATGCCTAAGCCAACCGATGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGA
* * *
13097230 GACGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCT
193 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
13097295 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
258 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
13097360 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTGCGGTTTGGGAT
323 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTTGAAACTTTTTACGGTTCGGGAT
* * *** *
13097424 TTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACAAAGTAGATGTGATCCTTGTATTTTTG
387 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
13097489 TTGGCATGCACAAAAAAAATTCAGCTAAAAAATCCAAGTGTACAAGATTTTGTGACCATTTGAAA
452 TTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
*
13097554 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTC
516 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
**
13097619 TTTAAGGGGGTGTGAGTTCTTGAGG-TT--T----GAT-----G---ATATAAGGGCCAAGTACC
581 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
13097669 AGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCC
646 AGCAACCATCACACATCATGTGCGCACACCCCTCCGG-CCCCCCGATCGTCGGAACCCCAATGCC
* * *
13097734 GCTGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGT
710 GCTGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGC
* * * * *
13097799 ACATGCCCAAGCCCAACAGGTGCTGCCGTAACCCTT-GGTTCGGTCTGATCTTAGACTGGGAATG
775 ACATGCCCGAGCCCAACATGTGCTGACGCAA-CCTTCGGTT-GGT-TGATCTTAGATTGGGAATG
* * *
13097863 AGCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTG
837 AACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
* * * * * *
13097927 CGGGTGCTCAGCCAGCCAGAGGGGCGAGATTCGCAAGCCGGGGATC-GACTGGGTCCCCCTCTGT
1 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTC-GGGTCCCCCTCTGC
* * * * * *
13097991 GTGCTGCCAATCCTGCTATCGTAACCCTCGGTCCGATGTGATCTTATACTAGGAGTGAACTCCGT
65 GTGCTG-CAATCCTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * * * * *
13098056 ATGCCTAAGCGAACCGACGAAACGAACGGGCGGGCAGGCGGGCGAGCACTACGCCGGCCAGAGAG
129 ATGCCTAAGCCAACCGATGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * * *
13098121 ACAGGATGCGCAAGCCGTGGATCGCTATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
194 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* *
13098186 CATGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGT
259 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* ** *
13098251 TTCATGTCAAGACGACTCGTTTTCTA-TTTTCA-TGATTTTTGAAACTTTTTGTGGTTCGAGATT
324 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTTGAAACTTTTTACGGTTCGGGATT
* *
13098314 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTAT
388 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
** * * * * *
13098379 TGGCATGCCCAAAGAAATTCAGCTAAAAATTCGAAGTGTACAATATATTGTGACCATTTCAAAAA
453 TGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
13098444 AGTGTCCCTATTTCAGACACTTTAATGGCTAATGGTAGCAAACTTGTAAAATCTCAAATGCTCTT
518 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
13098509 TAAGGGGGTGTGAATTCTCAAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAG
583 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
** * * *
13098574 -AACCCATTGCACATCATGT--GCACA-CACT----CCCCCCGATCGCCGGAACCCCAATTCCGC
648 CAA-CCATCACACATCATGTGCGCACACCCCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGC
* * *
13098631 TGGTCAGGTTCTCTGGCGATGCTCCGATGATGGTGCCCCCG-TGAAGAAAAGTGCGGCACCAGCA
712 TGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTG-CCCCGATGAAGAAAAATACGGCACCAGCA
* * * *
13098695 CTTGCCTGAGCCCAACATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGATTGGGAATGAA
776 CATGCCCGAGCCCAACATGTGCTGACGCAACCTTCGGT-TGGTT-GATCTTAGATTGGGAATGAA
** *
13098760 CTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
839 CTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
* * * * * **
13098822 CCGACGCTCAGTCGACCAGAGGGGCGAGATGCGCAAG-CGGGGATCGACCGGGTCCCCCTCTGCG
1 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCG
* * * *
13098886 TGCTACCGATCTTGCTATCGTAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTA
66 TGCT-GCAATCCTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * *
13098951 TGCCTAAGCCAACCGATGAAATGAGCGGGC-GAGCGGGCAGGCGGGCACTACATCAGCCAGAGAG
130 TGCCTAAGCCAACCGATGAAACGAGCGGGCGGA-CGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * * *
13099015 ATGGGATGCGCAAGCCGTGGATCGATCGGGT-GAAGGGTGGATTTAGGCACATCTTCATATTTCT
194 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA-GGTGGGTTTAGGCACATCTTCATATTTCT
* *
13099079 ACATGCCAATGCCATTTTGATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
258 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * *
13099144 TTTCATGGCAGGACGAATTGTTTTCTATTTTTCACTA-TTTTCAAAATTTTTACGGTTCGGGATT
323 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTTCGGGATT
* *
13099208 TTTTAAAATTTTTTCGGAAGGAGATTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGT
388 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
13099273 TGGCATGTGAAAAAAAAATTCAGGTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTAAAAA
453 TGGCATG-CAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
13099338 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
517 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
13099403 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
582 TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* *
13099468 GCAATCATCGCACATCATGTGCGCACACCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
647 GCAACCATCACACATCATGTGCGCACACCCCTCCGG-CCCCCCGATCGTCGGAACCCCAATGCCG
* ** * * *
13099533 -TCAGTCAGGTTCTCCGGCGATGCTCCGGGGTTGGTGCCCCGACGAAGAAAAATATGGCACCAGC
711 CT-GGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGC
* * *
13099597 ACATGCCTGAGCCCAGCATGTGCTGACGCAACCTTCGGTCTGATCTGAT-TCTAGATTGGGAATG
775 ACATGCCCGAGCCCAACATGTGCTGACGCAACCTTCGGT-TGGT-TGATCT-TAGATTGGGAATG
* * *
13099661 AACTCCATATCCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCGTG
837 AACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
* * **
13099725 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTCGGGTCCCCCTCTATG
1 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCG
* * * * * *
13099790 TGCTGTCAATCTTGCTGTCATAACCCTCAATCTGGTCTGATCTTAGGCAT-GGAATGAACTCCGT
66 TGCTG-CAATCCTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGAC-TGGGAATGAACTCCGT
* * * * * *
13099854 ATACCTAAGCCAACCGATGAAACGAGTGGGTGGACGGGCGGGTGGGCACTACGCCGGCAAGAGAG
129 ATGCCTAAGCCAACCGATGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * ** *
13099919 TCGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATGTCTTCATATTTCTG
194 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* *
13099984 CATTCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
259 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * *
13100049 TTCATGGCAAGATGACTCGTTTTCTTTTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTT
324 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTTCGGGATTT
* *
13100114 TTTAAAATTTTTTCGGAAGGAGTTCTGGCCCCAAAC-AGCGTAGACGTGATCCTTGTATTTTTGT
389 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG-GTAGACGTGATCCTTGTATTTTTGT
* *
13100178 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGCAAAA
453 TGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
13100243 AGTGTCCCCATTTCAGACACTTTAATGGCTACTAGAAGCAAACCTGTAAAATCTCAAATGCTCTT
518 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
13100308 TAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAG
583 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * ** * *
13100373 CACCCATCACACATCATGTGCGAACACCCC-CCGGCCCCCCGATCGTCAAAACCCCAATGCCACC
648 CAACCATCACACATCATGTGCGCACACCCCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCT
* * * * ** *
13100437 GATCAGGTTCTCCAGTGTTGCTCCGACAATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACA
713 GGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACA
** * *
13100502 TGCCCGAGCCCAACGCGTGCT-ACCGTAACC--C--TT-G--G-TC-------CGG--T----T-
778 TGCCCGAGCCCAACATGTGCTGA-CGCAACCTTCGGTTGGTTGATCTTAGATTGGGAATGAACTC
*
13100544 CA-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTA
842 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
* * * *
13100601 CGGGTGCTCAGCCGGCCAGAAGGGCGAGATGCACAAGCC-AGGGATCCGTCGGGTCCCCCTCTGC
1 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGC
* * * * * * *
13100665 GTGCTGCTGATCCTGCTACCGCAACCCTCAGTCCGATCTAATCTTAGACTGGTAATGAACTCCAT
65 GTGCTGC-AATCCTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * ** *
13100730 ATGCCTAAGTCAACCGATGAAATGAGCGGACAGG-CGGGCGGGCTAGCACTACGTCGGCCAAAGA
129 ATGCCTAAGCCAACCGATGAAACGAGCGGGC-GGACGGGCGGGCGGGCACTACGTCGGCCAGAGA
13100794 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
193 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
13100859 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
258 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * **
13100924 TTTCAAGGTAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGA-GGTTCCAGAT
323 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTT-ACGGTTCGGGAT
* **
13100988 TTTTTAAAATATTTTT-GGAAGGAGGTTTGGTACCAAACTTGGTAGACGTGATCCTTGTATTTTT
387 TTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
13101052 GTTGGCATGCA
451 GTTGGCATGCA
13101063 CATGCCTGAG
Statistics
Matches: 2736, Mismatches: 339, Indels: 136
0.85 0.11 0.04
Matches are distributed among these distances:
875 3 0.00
876 439 0.16
877 11 0.00
878 2 0.00
879 1 0.00
883 1 0.00
885 2 0.00
888 129 0.05
889 103 0.04
890 300 0.11
891 3 0.00
892 1 0.00
893 4 0.00
894 358 0.13
895 414 0.15
896 9 0.00
897 6 0.00
898 4 0.00
900 4 0.00
901 6 0.00
902 109 0.04
903 255 0.09
904 476 0.17
905 96 0.04
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (900 bp):
CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCG
TGCTGCAATCCTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGATGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTTCGGGATTTTT
TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
CATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAA
CCATCACACATCATGTGCGCACACCCCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCTGGT
CAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGC
CCGAGCCCAACATGTGCTGACGCAACCTTCGGTTGGTTGATCTTAGATTGGGAATGAACTCCATA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
Found at i:13102034 original size:26 final size:25
Alignment explanation
Indices: 13102005--13102053 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
13101995 CCGGTCCGAT
13102005 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAT-AACTCCGTATG
*
13102031 CTTAGACTGGGAATTACTCCGTA
1 CTTAGACTGGGAATAACTCCGTA
13102054 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATAACTCCGTATG
Found at i:13103840 original size:25 final size:25
Alignment explanation
Indices: 13103806--13103853 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
13103796 TCCGATCTTA
13103806 GACTGGGAATGAACTCTGTATGCTT
1 GACTGGGAATGAACTCTGTATGCTT
*
13103831 GACTGGGAATGAACTTTGTATGC
1 GACTGGGAATGAACTCTGTATGC
13103854 CTAAGTCATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (25 bp):
GACTGGGAATGAACTCTGTATGCTT
Found at i:13104418 original size:903 final size:903
Alignment explanation
Indices: 13101060--13109201 Score: 9920
Period size: 903 Copynumber: 9.2 Consensus size: 903
13101050 TTGTTGGCAT
* * * *
13101060 GCACATGCCTGAGCCCAGCATGTACTGTCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAAT
1 GCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * * **
13101125 AAACTCCATATGCTTAGATTGAAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
66 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * ** *
13101190 CGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCTAGGGATCGATCGGGTCCCCCTCTACG
131 CGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACG
** * * * * * *
13101255 TGCTGGTGATCCTGCTGTCACAACCCTCAATCTGATCCGATCTTGGACTGGGAATGAACTCCGTA
196 TGCTGCCGATCCTGCTGCCACAACCCTCAATCCGGTCCAAACTTAGACTGGGAATGAACTCCGTA
* * *
13101320 TGCCTAAGCCAACCGATG-AATGAGCGGGCAGGCGGGCGGGCAGGGGGCACTACGCCGACCAGAG
261 TGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGC---GGGCACTACGCCGGCCAGAG
* *
13101384 AAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT
323 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
13101449 TGCATCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAA
388 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* *
13101514 GTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGAT
453 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
** * * * * *
13101579 TTTTTAAACCTTTTTCGGAAGGATTTTTGACCCCAAACTTAGTAGACGTGACCCTTGTATTTTTT
518 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
13101644 TTGGCATGCATAAAAATATTCAGCTAAAAACTTCGAAGTGTACAAGATTTTGTGGCCATTTGAAA
583 TTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * *
13101709 AAAGTGTTCCCATTTCGGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTC
647 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * *
13101774 TTTAAAGGGGAGTGAGCTCTAG-AGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTAC
712 TTTAAGGGGGTGTGAGTTCTCGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
13101837 CAGCACCCATCACACATCATGTGCGTACACCCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCC
777 CAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCC
* *
13101902 GTCGGTCAGGTTCTCCG----G-T-----GATGGTGCCTCGACGAAGAAAAATGCGGCACCA
842 GTCGGTCAGGTTCTCCGCAATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* ** *
13101954 GCACATGCCCGAGCCCAGCATGTCCTG-CTGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAA
1 GCACATGCCCGAGCCCAGCATGTGCTGTC-ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * *
13102018 TGAACTCCGTATGCTTAGACTGGGAAT-TACTCCGTAAGCCTAAGTCAACCCACAAAACAAGCGT
65 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
13102082 GCAGGCGCTCAGCCAGCCAGAGGTGCGGGATGCGCAAGCCGAGGACCGATCGGGTCCCCCTCTAC
130 GCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTAC
* * * * * *
13102147 GTGCTACCGATCCTGCTGCCACAACCCTCAGTCTGGTCCCATCTTAGACTGGGAATGAACTCCGC
195 GTGCTGCCGATCCTGCTGCCACAACCCTCAATCCGGTCCAAACTTAGACTGGGAATGAACTCCGT
* * ** * *
13102212 ATGCCTAAGCCAACCGACGAAACGAGC--G--GGTGGGTGGGTAGGCACTACGTCGGCCAGAGAT
260 ATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
* * * * * *
13102273 ACAGGATGCGTAAGCCATGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTTTG
325 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* *
13102338 CAAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAGGT
390 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * *
13102403 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTTGGGAATT
455 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTT
* * *
13102468 TTTAAAATTTTTTCTGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
520 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
13102533 GGCATGCACACAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
585 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
13102598 GTGTCCCCATTTGAGACACTTTAATGGCTACCGGCAGCGAACCTGTAAAATCTCAAATGCTCTTT
650 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * *
13102663 AAGGGGGTGTGAGTTCTCCAA-GTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTATCAG
715 AAGGGGGTGTGAGTTCTCGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
** * *
13102727 CACCCATCGTACATCATGTGCGCACACCCCCACCGGCCCCCCGAATCGCCGAAACCCTAATGCCG
780 CACCCATCACACATCATGTGCGCACACCCCC-CCGGCCCCCCG-ATCGCCGGAACCCCAATGCCG
* * * * * *
13102792 CCGGTCAGGTTCTCCGACGATTCTCTGGGGATGGTGCCCCGGTGAAGAAAAATGCGGCACCA
843 TCGGTCAGGTTCTCCG-CAATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* * * * *
13102854 GCACATGCCTGAGCCCAGCATGTACTGTCACAACCCTAGGTCCGTTCCGATCTTAGACTAGGAAT
1 GCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * ** * *
13102919 AAACTCCATATGCTTAGACTGAAAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTG
66 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
13102984 CGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACA
131 CGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACG
* * ** * * *
13103049 TGCTGCTGATCCTGCTGTCACAACCCTTGAT-CGATCCAATCTTGGACTGGGAATGAACTCCGTA
196 TGCTGCCGATCCTGCTGCCACAACCCTCAATCCGGTCCAAACTTAGACTGGGAATGAACTCCGTA
*
13103113 TGCCTAAGCCAACCGACG-AATGAGCGGGCAGGCGGGCGGGCAAAGGGGCACTACGCCGGCCAGA
261 TGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGC----GGGCACTACGCCGGCCAGA
*
13103177 GAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
322 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*** *
13103242 CTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGA
387 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * *
13103307 AGTTTCAT---------ACTCATTTTCTATTTTTCATGATTTTTGAAACATTTTAGGGTTTGGGA
452 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA
* * ** *
13103363 TTTTATAAAAAATTTTT-GGAAGGAGTTTTACCCCCAAACTTGGTAGACATGATCCTTGTATTTT
517 TTTT-TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
*
13103427 TGTTGGCATGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
581 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
*
13103492 AAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
646 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
13103557 CATTAAGGGGGTGTGAGTTCT-GAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTG
711 CTTTAAGGGGGTGTGAGTTCTCGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** *
13103621 CCAGCACCCATTGCTCATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
776 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATG
* **** *
13103686 CCGTTGGTCAGGTTCTCCAGCAATGCTCCGGCGATGGTTTTTCGGTGAAGAAAAATGCGGCACCA
840 CCGTCGGTCAGGTTCTCC-GCAATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* * * *
13103751 GCACATGCCCGAGCCCAGCGTGTGCTG-CGGCAACCCTGGGTCTGGTCCGATCTTAGACTGGGAA
1 GCACATGCCCGAGCCCAGCATGTGCTGTC-ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* ** * *
13103815 TGAACTCTGTATGCTT-GACTGGGAATGAACTTTGTATGCCTAAGTCATCCCACGAAACGAACGT
65 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
13103879 GCGGGTGCTCAGCCGGCTAGAGGGGAGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTTTGC
130 GCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTAC
* * * *
13103944 TTGCTGTC-ATTCCTGCTGCCGCAACCCTCAATCCGGTCTAAACTTAGACTGGGAATGAACTCCG
195 GTGCTGCCGA-TCCTGCTGCCACAACCCTCAATCCGGTCCAAACTTAGACTGGGAATGAACTCCG
* * * *
13104008 TATCCCTAAGCCAACCGAGGAAACGTGCAGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
259 TATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
*
13104073 GACGGGATGCGCAA-CCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTC
324 GACGGGATGCGCAAGCC-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
13104137 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
388 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *
13104202 GTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGAT
453 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
**
13104267 TTTTTAAAATTTTTTCAAAAGG-GATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
518 TTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
13104331 GTTGGCATACACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAA
582 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
13104396 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
647 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
13104461 TTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
712 TTTAAGGGGGTGTGAGTTCTCGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
13104525 CAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCC
777 CAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCC
* * * * *
13104589 GCCGGTTAGGTTCTCCGGCAATGCTTCGGCGATGGTACCCCGGCGAAGAAAAATACGGCACCA
842 GTCGGTCAGGTTCTCC-GCAATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* * * * * *
13104652 ACACATGCCCAAGCCCAACATGTGCTGTCATAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
1 GCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * *
13104717 GAACTTCGTATGCTTAGTCTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTG
66 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * ** * * *
13104782 CAGTTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTTGGGGATAGGCCGAGTCCCCCTCTGA-
131 CGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT-AC
* *** * * * * * **
13104846 GTGCTGCCGATCCTACTGCTGTAACCCTCAGTCTGGTCTGATA-TTATACTGGGAACAAACTCCG
195 GTGCTGCCGATCCTGCTGCCACAACCCTCAATCCGGTC-CAAACTTAGACTGGGAATGAACTCCG
* * *
13104910 TATGCCTAAGCCAACTGACGAAACGAGTGGGC-GCGCGGGCGGGCGGGCACTACGCCAGCCAGAG
259 TATGCCTAAGCCAACCGACGAAACGAGCGGGCAG-GCGGGCGGGCGGGCACTACGCCGGCCAGAG
* *
13104974 AGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTT
323 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTT
*
13105039 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCACGTGA
387 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* **
13105104 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGA
452 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA
* *
13105169 TTTTTTTAAAATTTTTTCGGAAGGA-TTTTGGCCCCAAACTTGGTAGAGGTGATCCTTGTTTTTT
517 -TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * *
13105233 TGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACCATTTGAA
581 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
13105298 AAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAGATGCT
646 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
13105363 CTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
711 CTTTAAGGGGGTGTGAGTTCTCGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** *
13105427 CTGGCACCCATCACACATCATGTGCGCACACCCCCCC-GCCCCCCGATCGTCGGAACCCCAATGC
776 CCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
* * * * ** *
13105491 CGTCGGTCAGGTTCTCTGACGATGATCTGATGATGGTGCCCAC--AGAAG-AAAATGCGGCACCA
841 CGTCGGTCAGGTTCTCCG-CAATGCTCCGGCGATGGTGCCC-CGGCGAAGAAAAATGCGGCACCA
* * ** *
13105553 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTATCTGATCTTAGACTGGGAAT
1 GCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* *
13105618 GAACTCCGTATGCTTAGTCTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTG
66 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
13105683 CGGTTCCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGAGTCCCCCTCTGA-
131 CGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT-AC
* * *** ** * * *
13105747 GTGCTGCCGATCCTACGGCTGTAACCCTCGGTCCGGTCTGATA-TTAGACTGGGAACGAACTCCG
195 GTGCTGCCGATCCTGCTGCCACAACCCTCAATCCGGTC-CAAACTTAGACTGGGAATGAACTCCG
* * *
13105811 TATGCCTAAGCCAACTGACGAAACGAGTGGGC-GCGCGGGCGGGCGGGCACTACGCCAGCCAGAG
259 TATGCCTAAGCCAACCGACGAAACGAGCGGGCAG-GCGGGCGGGCGGGCACTACGCCGGCCAGAG
* *
13105875 AGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTC
323 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
13105940 TACATGCCAATGCCATTTTTATGGCTTGTAGATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
388 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
*
13106005 GTTTCA-GTGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA
453 GTTTCATG-GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA
* * *
13106069 TATTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTGTTTTT
517 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
13106134 -TTGGCATGCAC-AAAAAATTCAGCTAAAAAACTCGAAGTGTACAATATTTTGTGACGATTTGAA
582 GTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
13106197 AAAAGTGTCCCCATTTTCAGACAC-TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
646 AAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*** * * *
13106261 TCTTTAAGGGGGCAAGAGTTCTC-AAGGTCTGATGAGGGATAGAGGGCCAATATAAGGGCCGAGT
710 TCTTTAAGGGGGTGTGAGTTCTCGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
13106325 ACCAGCACCCATCACACATCATGTGCACACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATG
775 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATG
* * * * *
13106390 CTGTCGATCAGG---T------T-CTCCGGCGATGGTGCCCCGACGAAGAAATATACGGCACCA
840 CCGTCGGTCAGGTTCTCCGCAATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* *
13106444 GTACATGCCCGAGCCCAGCATGTGC--T-------CT--GT---GT--G--CTTAAACTGGGAAT
1 GCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* *
13106491 GAA---C---T-C-----C-------G---T----ATGCCTAAGTCAACCCACAAAACGAGCATG
66 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* ** * * *
13106530 CGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGCC-GGT-CCCC-CT-C-
131 CGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACG
* * *
13106590 TGC-G-TG-T--TGC-G---------TC---CCGG----ATCTTAGACTGGGAATGAACTCTGTA
196 TGCTGCCGATCCTGCTGCCACAACCCTCAATCCGGTCCAAACTTAGACTGGGAATGAACTCCGTA
* * * * * *
13106633 TGCCTAAGCCAACTGACGAAACAAGCGGACGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGA
261 TGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
* * * * * *
13106698 CGGGATACGGAAGCCGTAGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTTTGC
326 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
13106763 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
391 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * **
13106828 TCATGGCACGATGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTT
456 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* * *
13106893 TTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTG
521 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * *
13106958 GCATGCACAAAAACATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAGAG
586 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
13107023 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTA
651 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
13107088 AGGGGGTGTGAGTTCTCGAAGGTTTGATGAGGGATA-GGGGCCAATATAA-GGCCAAGTACCAGC
716 AGGGGGTGTGAGTTCTCGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
13107151 ACCCATCA-ACATCATGTGCGTACACACCCCCCGGCCCCCGTCGATCGCCGGAACCCCCAATG-C
781 ACCCATCACACATCATGTGCGCACAC-CCCCCCGGCCCCC--CGATCGCCGGAA-CCCCAATGCC
* * * * * **
13107214 G-CTGGTCAGGTTCTCTGGCAATGCTACGCACGATGGTGACCCGGTGAAGAAAAATGCATCACCA
842 GTC-GGTCAGGTTCTC-CGCAATGCTCCG-GCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* * * *
13107278 GCACATGCGCAAGCCCAGTATGTGCTGCCACAA-CCT---T---G---G-TC-----C----AAT
1 GCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * * *
13107323 ----T-CG-AT-CTTAGATTGGAAATG-ACCCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
66 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * ** * *
13107380 CGGGTGCTCA-TCGGCCAGA-GGGCGGGATGC-AAAGCCAAGGATCGACCGGGTCCCTCTCTGCG
131 CGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACG
* * ** *
13107442 TGCT----AT-C-G-T-----AACCTTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
196 TGCTGCCGATCCTGCTGCCACAACCCTCAATCCGGTCCAAACTTAGACTGGGAATGAACTCCGTA
* * * * * * * * *
13107495 AGCCTAAGCCAACCGAC-AAA--A-C--G-A-ACCGACAGGCAGGCACTACGTCGACCGGAGAGA
261 TGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
* ** * *
13107552 CAGGATAAGCAAGCCGTGGATCAATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTAC
326 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* * *
13107617 GTGCCAATGCCATTTTTATGGCTTGTCAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTT
391 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
** * *
13107682 TCATGGCAAGATAACTCGTTTTCTATTTTTCAC-ATTTTTTAAAACTTTTTACGGTTAGGGATTT
456 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTCGGGATTT
* * *
13107746 TTTAAAATTTATTT-GGAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTTT
520 TTTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
13107810 TGGCTTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
584 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
13107875 AGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAGACCTGTAAAATCTCAAATGCTCCT
649 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
13107940 TAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
714 TAAGGGGGTGTGAGTTCTCGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * * * *
13108004 GCACCCATCACACATCATGTGCGTAAACCCCCCCCGACCCCCTCGATCGTCGAAACTCCAATGCT
779 GCACCCATCACACATCATGTGCGCACA-CCCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCC
* * * *
13108069 GCCAGTCAGGTTCTCCGACGATGCTCCGAG-GATGGTGCCCCGACGAAGAAAAATGC-GCACCA
842 GTCGGTCAGGTTCTCCG-CAATGCTCCG-GCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* * ** *** ** *
13108131 GCACATGCCCGAGCCCAACATGTGCTGGCGTAACCCTCGGTCTAATTTGATCTTAGACTGTGAAT
1 GCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * * * *
13108196 GAACTTCGTATGCTTAGACT-GGAATAAACTCTGTATGCCTAAGTCAACCCATGAAACGAACGTG
66 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * ** * *
13108260 CGGGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGAGTCCCCCTCTGCG
131 CGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACG
* * *** ** *
13108325 TGTTGCCGATCCTACTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
196 TGCTGCCGATCCTGCTGCCACAACCCTCAATCCGGTCCAAACTTAGACTGGGAATGAACTCCGTA
* * *
13108390 TGCCTAAGTCAATCGACG-AA--A---TG-A-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
261 TGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
* * * *
13108447 CGGGATGCGCAAGCCGTTGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTCTAT
326 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* *
13108512 GTGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
391 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * **
13108577 TCATGGCACGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTT
456 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* * *
13108642 TTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTG
521 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
** * * * *
13108707 GTGTGCACAAAAACATTCACCAAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
586 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * * * *
13108772 TGTCCCCGTTTTAGACACTTTAATGGCTACTGGCAGTAAACCTCTAAAATCTCAAATGCTTTTTA
651 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
13108837 AGGGGGTGTGAGTTCTC-AAGGTTTGATGAGAGATAGGGGGCCAATATAAGGG-CAAGTACCAAC
716 AGGGGGTGTGAGTTCTCGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * * *
13108900 ACCCATCGCACATCATGTGGGCAGACCCCCTCGGCCCCCCGATCGCCAGAACCCCAAAGCCGTCA
781 ACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCG
*
13108965 GTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
846 GTCAGGTTCTCC-GCAATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* * * * *
13109024 GCACATGCCCAAGCCAAGTATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
1 GCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * * * *
13109089 GAACTCCGTATGCTTAGACTGCGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACGAGCGGG
66 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
** ** * * *
13109154 CGGGCACT-ACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
131 CGGGTGCTCA-GCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
13109202 TAGGGTGGTA
Statistics
Matches: 6360, Mismatches: 680, Indels: 416
0.85 0.09 0.06
Matches are distributed among these distances:
819 15 0.00
820 352 0.06
821 132 0.02
822 46 0.01
823 8 0.00
824 4 0.00
825 1 0.00
827 2 0.00
830 1 0.00
832 6 0.00
833 4 0.00
834 48 0.01
836 2 0.00
837 2 0.00
839 1 0.00
840 2 0.00
841 4 0.00
842 5 0.00
844 3 0.00
845 4 0.00
846 2 0.00
847 83 0.01
848 13 0.00
849 10 0.00
850 38 0.01
851 4 0.00
852 3 0.00
853 49 0.01
854 445 0.07
855 58 0.01
856 28 0.00
857 2 0.00
858 5 0.00
859 1 0.00
861 4 0.00
862 40 0.01
863 1 0.00
864 2 0.00
866 1 0.00
867 1 0.00
869 1 0.00
870 1 0.00
873 19 0.00
875 1 0.00
877 2 0.00
878 2 0.00
879 6 0.00
880 50 0.01
881 7 0.00
882 13 0.00
883 27 0.00
886 123 0.02
887 341 0.05
888 13 0.00
889 47 0.01
890 14 0.00
891 37 0.01
892 67 0.01
893 258 0.04
894 337 0.05
895 485 0.08
896 125 0.02
897 188 0.03
898 340 0.05
899 227 0.04
900 359 0.06
901 642 0.10
902 276 0.04
903 747 0.12
904 29 0.00
907 144 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (903 bp):
GCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACG
TGCTGCCGATCCTGCTGCCACAACCCTCAATCCGGTCCAAACTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCG
GTCAGGTTCTCCGCAATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
Found at i:13104739 original size:26 final size:26
Alignment explanation
Indices: 13104703--13104754 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13104693 CTGGTCTGAT
*
13104703 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13104729 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13104755 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13105640 original size:26 final size:26
Alignment explanation
Indices: 13105604--13105655 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13105594 CCTATCTGAT
13105604 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13105630 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13105656 GCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13108231 original size:25 final size:26
Alignment explanation
Indices: 13108182--13108233 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
13108172 CTAATTTGAT
*
13108182 CTTAGACTGTGAATGAACTTCGTATG
1 CTTAGACTGTGAATAAACTTCGTATG
13108208 CTTAGACTG-GAATAAAC-TCTGTATG
1 CTTAGACTGTGAATAAACTTC-GTATG
13108233 C
1 C
13108234 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 2 0.08
25 13 0.54
26 9 0.38
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
CTTAGACTGTGAATAAACTTCGTATG
Found at i:13109104 original size:26 final size:26
Alignment explanation
Indices: 13109075--13109127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13109065 CCGGTCCGAT
* *
13109075 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCCTATG
13109101 CTTAGACTGCGAATGAACTCCCTATG
1 CTTAGACTGCGAATGAACTCCCTATG
13109127 C
1 C
13109128 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCCTATG
Found at i:13109845 original size:26 final size:26
Alignment explanation
Indices: 13109807--13109859 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13109797 CCTGTTCGAT
*
13109807 CTTAGACTTGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
13109833 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13109859 C
1 C
13109860 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13110367 original size:899 final size:899
Alignment explanation
Indices: 13109101--13117751 Score: 10525
Period size: 899 Copynumber: 9.8 Consensus size: 899
13109091 ACTCCGTATG
* *
13109101 CTTAGACTGCGAATGAACTCCCTATGCCTAAGCCAACCGACGAAAC--G-A-----GCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGG
13109158 CACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 CACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
13109222 GGCACATCTTCATATTTCTACATTCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCC
130 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
13109287 CTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
* *
13109352 CTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAATGG-GTTTTGGCCCCAAACTTGGTAGA
260 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACTTGGTAGA
* * *
13109416 CGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTGAGCTAAAAACTCGTAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
13109481 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAA-ACTTTAATGGCTACTGGTAGCAAACC
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA-AACACTTTAATGGCTACTGGCAGCAAACC
* * *
13109545 TTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTTGAGGTTTGATGAGGGATAGGGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* ** * * *
13109610 AATATAAGGGCCAAGCACCTTCACCCATCGCACATCATGTGCACACACCCCCTGACCCCCCCGAT
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
** * *
13109675 CACCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTG-CGACGGTGCCCCGACGA
583 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GACGATGGTGCCCCGACGA
* * * *
13109739 AGAAAAATGTGGCAGCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGTTC
647 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGTCC
* * *
13109804 GATCTTAGACTTGGAATAAACTCCGTATGCTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAA
712 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
13109869 CTCACGAAGCGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGA
777 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * ** * *
13109934 CCGGGTCCCCCTTTGCGTGCTACCGATCCTGCTGCCATAACCCTCCATCCGGTCCGAT
842 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGAT
* * * *
13109992 CTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACAGAAGAAACGAGCAGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGG
* * *
13110057 CACTACATCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGAGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
13110122 GCACATCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
13110187 TTAAGCCTTCACGTGAAGTTTCATGACAAGACTACTCGTTTTCTATTTTTCACGATTTTCAAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
* *
13110252 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGAAGACG
261 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
13110317 TGATCCTTGTATTTTTGTTGGCTTGCACCAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* ** *
13110382 TTGTGACCATTTGAAAAAAGTGTCCTCATTTCCGACACTTTAATGGCTACTGGCAGCAAACCTTT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
13110447 AAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTTGAGGTTTCATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* ** *
13110512 ATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCATGCCCCTCC-ACCCCCCCGATCG
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCGATCG
* * * * * ** *
13110576 CCGAAACCCCAATGCCGCCGCTCAGGTTCT-TGAACGATGCTCCGACGATGGTGCCCCGGTGAGG
585 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-ACGATGCTCCGACGATGGTGCCCCGACGAAG
* *
13110640 AAAAATACGGCACCAACACATGCCCGAGCCC-GCATGTGCTG-CGCAA-CCTCGGT-CTGGTTCC
649 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCT-G-TCC
13110701 GATCTTAGACTGGGAATGAACTTCCCGTATGCTTAGACTGGGAATGAATCTCCGTATGCCTAAGT
712 GATCTTAGACTGGGAATGAAC-T-CCGTATGCTTAGACTGGGAATGAA-CTCCGTATGCCTAAGT
* *
13110766 CAACCCACGAAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGAT-CGCAAGCCGGGG
774 CAACCCACG--AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * *
13110830 ATCGACTGGGTCCCCCTCTTCGTGCTGCTGATCCTGCCTGCCACAA-CCTGCCATCCGGTCTGAT
837 ATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTG-CTGCCGCAACCCT-CGATCCGGTCTGAT
* * *
13110894 CTTAGACTGGGAAATGAAACTCTGTATGCCTAAGCCAAACCGACAAAAACGAGC--G-GGCCGGG
1 CTTAGACTGGG-AATG-AACTCCGTATGCCTAAGCC-AACCGAC-GAAACGAGCAGGCGGGCGGG
** * * * *
13110956 CGGGCACTTACCCCGACCAAGAGAGAGCGGGATGCGCAAGCCATGGATCGATAAGGT-GTAGG-A
62 CGGGCAC-TACGTCGGCC-AGAGAGA-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
13111019 GGTTTAGGCCACATCTTCAAATTTTTCTGCCATG-C-ATGCCA-TCTTATGGCTTGTAAATTCAT
124 GGTTTAGG-CACATCTTC--ATATTTCTG-CATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
13111081 AC-ATGGTCCGGCTTAAG-CTTCACGTTAAGTTTCAATGGCAGGACGACTCGTTTTCCTATTTTT
185 ACAATGGTCC--CTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGACGACTCGTTTT-CTA-TTTT
* * *
13111144 TTATGATTTTCGAAAACTTTTTTATGGTTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
245 TCACGATTTTCG-AAAC-TTTTTACGG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
13111209 GCCCCAAACTTGGTAGACCG-GATCCTTG--TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
307 GCCCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
13111271 AACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGCCCCCATTTCGAACACTTTAATG
371 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATG
* * *
13111336 GCTACTGGCAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTG
436 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
13111401 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACAC
501 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
** * * * * *
13111466 CCCGTAGGCCCCCTCTATCGTCGTAACCCTAATGCTGTCGGTCAGG---T-------T-CT-C--
566 CCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
* *
13111517 C---GGT--------GAAGAAAAATGTGGCACCAGCACATGCCC-ATGCCCAGCATGTGCTGTCG
630 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA-GCCCAGCATGTGCTGCCG
* * * * *
13111570 CAACCCTC-GACCCGATCCGATCCTAGACTGGGAATGAACTCTGTTTGCTTAGACTGGGAATGAA
694 CAACCCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
13111634 CTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGTCGGCCAGAGGGGTGGGA
758 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * ** * * * * *
13111699 TGTGCAAGCCTGGGATCGATTGGGTCTCCCTCTGCGTGCTACCGATCTTGCTGTCGTAACCCTCG
823 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
13111764 ATCCGGTCTGAT
888 ATCCGGTCTGAT
* * *
13111776 GTTAGATTGGGCATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA------------GCAGG
* * * * * *
13111841 CGGACGGGCGGGCACTACGCCGGCCAAAGAGGCAGGATGCGCAAGCCGTGCATCGATAGGGTGGT
54 CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
13111906 AGGTGGG-TTAGGCACATCTTCATATTTCTTCATGCCAATGACATTTTTATGGCTTGTAAATTCA
119 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
13111970 TACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACGACTCGTTTTCTATTTTTCAA
184 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-A
* ** *
13112033 TGATTTTTAAAACTTTTTACGGTTCGGGA-TTTTTAAAAATTTTTCGGAAGGAGTTTTGGCCCCA
248 CGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
13112097 AACTTGGTAGAACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
313 AACTTGGTAG-ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
13112161 AAGTGTACAAGATTTTGTGACCATTTTG-AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
377 AAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAC
13112225 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTC-AGGTTTGATGAG
441 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
13112288 GGATAGGGGGCCAATATAAGGGCCAA-TACGAGCACCCATCGCACATCATGTG-GCACA--CCCC
506 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *
13112349 GG-CCCCCCGATCGTCGAAACCCCAATG-CG-C-AT-AGGTTCTCCGAC---G----G--GAT-G
571 GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
13112399 T--CCC--CGAAG-AAAAT-CGGCACCAGCACATG-CCGAGCCCAGCATGTGCTG--GC-A----
636 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * *
13112450 C--TAC-G--C--TCTTAGTCT--G---G---TCCG-AT-C-TAGACATAGGAATAAACTCTGTA
701 CGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTA
* *
13112497 TGCCTAAGT-AA-CCA-GAAACGAGCGT--AGG-GCTCAGCCGACCAGAGGGGCGGGAT---CAA
765 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
** * * *
13112553 GCCGGGGATCGGTCAGGT-CCCCTCT--GTGCTG-C-ATCTTGCTG-CGCAA-CCT-G-TCTGGT
830 GCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGT
13112609 CTGAT
895 CTGAT
* *
13112614 CTTAGACTGGGAATGAACTCCGTATGCCTAA--CAACCGACGAAAGGA-C-GGCGGCGAACGGAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGG-G--CGGGC
13112675 -GGCACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
63 GGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
13112738 TTAGGCACATCTTCCTATTTCTGGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
13112803 TCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGACCCGTTTTCTATTTTTAACGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
* * * *
13112868 AAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAATTTGGAA
257 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
13112933 GACGTGATCCTTGTATTTTTTTTGGCAGGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
322 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
13112998 GATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTTAAACACTTTAATGGCTACTGGCAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
* * * *
13113063 CTGTAAAATCTCCAATGCTTTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
13113128 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACA-CCCCCGGCCCTCCCGA
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* **
13113192 TCGTCGGAACCCCAATGCCG-CTGTTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACG
582 TCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* *
13113256 AAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTC
646 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGTC
* * ** *
13113321 CGATCTGAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAAAAAACTTCGTATGCCTAAGTCA
711 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
13113386 ACCCACGAAACGA----GCGGGCG-T-A--C-GCTC--A--GTCGGG-T-----A-TC--GG-TC
776 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC-CAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
13113428 GA----GTACCCCTCTGCGTGCTGTCGATCCTGTTGTCGTAACCCTCGATCTGGTCCGAT
840 GACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGAT
* * *
13113484 CTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGC---
* * * *
13113549 TGGGCACTACGCCGGCCTGAGAGACAGGATGCG-AAGCCGTGGATCAATAGGGTGGTAGGTGGGT
63 -GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
** * * * *
13113613 TTAGGCATGTCTTGACATTTCTGCTTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
13113678 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTACTTTTCACGATTTT-G
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
* * * *
13113742 AAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCGCCAAACTTGGT
257 -AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
13113807 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAGAATTAAGCTAAAAA-TCGAAGTGTAGA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
13113871 AGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
* *
13113936 ACTGTAAAATCTCAAATGCTC--T-----GGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* **
13113994 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCGGCCTTCCCG
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
**
13114059 ATCGTCGGAA-CCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACG
581 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* ** **
13114123 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTAGTCCAATC
646 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGTC
* *
13114188 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTTCGTA----T--GTCA
711 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
13114247 ACCCACAAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCG
776 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
** * * * * * *
13114312 GTCGGGTCCCCCTCTTGC--GCTGCCAATCCTGCTACCGTAACCATCGGTCTGGTCTGAT
841 ACCGGGTCCCCCTC-TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGAT
* *
13114370 CTTAGACTAGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAAC-A--A---------GCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGG
* *
13114423 ---T--G--GG-C-G-G-G-C--GA-ACGCAAGCCGTGGATCGAGAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
13114473 GCACATATTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
13114538 TTAAGCCTTCACGTGAAGTTTTATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
* * **
13114603 TTTTGACGGATCGACATTTTTTAAAATTTTTTC-GAATGGAGTTTTGGCCCCAAACTTGGTAGAC
261 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
13114667 GTGATCCTTGTATTTTTGTTGGCATGCATAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGGT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
13114732 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTG
*
13114797 TAAAATCTCAAAAGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
13114861 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCACCCCGGCCCCCCCGAT
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCCGAT
* ** *
13114926 CGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGACGAA
583 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
** * * *
13114990 GAAAAATATGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGGCACAACCCTCGGT-CTGGTCC
648 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCT-GTCC
*
13115054 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
712 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
13115119 CCCACGAAGCGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
777 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * * **
13115184 TCGAGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCCAAT
842 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGAT
* * *
13115242 CTTACACTGGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAACGAGC-GAGCGGGCGGGCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG-GCGGGCGGGCGG
*
13115306 GCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
65 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
** *
13115371 GTTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCC
130 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
13115436 CTTAGGCCTTCACTTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTGGAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
* * **
13115501 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGG-CCCAAACTTGGTAGGT
260 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
13115565 GTGATCCTTGTATTTCTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
13115630 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATTGCTACTGGCAGCAAACCTA
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTG
* *
13115695 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
13115760 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGGCCCCCTCGATCG
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * * * *
13115824 TCGGAACCCCAATGTCGTCGTTTAGGTTCTTCGGCGA---T---AC-----TGCCCCGACGAAGA
585 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * * *
13115878 AAAATACGACACCAACACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CGAT
650 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGTCCGAT
* *
13115942 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAATTCCGTATGCCTAAGTCAACCC
715 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
13116007 ACGAAACGAGGGTGTGGGCGCTCAACCGGCCAGAGGGACGAGATTCGCAAGCCGGGGATCAGA-C
780 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACC
* *** *
13116071 GGGTCCCCCTCTGCGTGCTGTCGATCCTGCCATCGCAACCCT-GATCTGGTCTGAT
844 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGAT
* * * * * * * * *
13116126 CTTCGACTAGGAATGAACTCCGTATACCTAAGTCAACTGATGAAATGAGCTGGCAGGCAGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCAGGCGGGCGGG
* * * *
13116191 CGGGCACTACATCGGCCAGAGAGATGGGATGCGGAAGCCGTGGATCAATAGGGTGGTAGGTGGGT
62 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
13116256 TTAGGCACATCTTCATATTTCTACATGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
** *
13116321 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCTATTTTTCATAATTTTCA
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
* * * * *
13116385 AAAC-ATTTGCGGTTCGAGATTTTTTAAAATTTATTCGGAAGGATTTTTGGCCCCAAACTTGGTA
257 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
13116449 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAAATTGAAGTGTACAA
322 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
13116514 GATTTTGTGACCATCTGAAAAAA-TGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
13116578 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
13116643 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGG-ACCCCTG
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCCG
* ** * ** *
13116707 ATCGTCGAAACCAAAATGGCGTCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCC-AGC
581 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-C
* * *
13116771 GAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGT
645 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CGGT
*
13116836 CCGATATTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
705 -C---------CT--G--T---C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * *
13116901 GGGAATGAACTCCGTATACCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGA
749 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
** * * *
13116966 GGGGCGGGATGCGCAAG-C-GGGATCGATTGGGTCCCCCTCTGCATGCTGCCGATCCTGTTGCTG
814 GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
*
13117029 CAACCCTC-AGTCCGATCTGAT
879 CAACCCTCGA-TCCGGTCTGAT
* ** * * *
13117050 CTTAGATTGGGAATGAACTCTATATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---GCAGGCGGGCGGG
* * *
13117115 CGGGCACTACGCCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
13117180 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA-ACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
13117244 TCCCTTAAGCCTTCACGTGAA-CTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTCG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
* * * * *
13117307 AAACTTTTTGCGTTTCAGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTA
257 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
13117372 GACGTGATCCTTGTATTTTTCTTGGAATGCACAAAAAAAAATT-AGCTAAAAATTCGAAGTGTAC
322 GACGTGATCCTTGTATTTTTGTTGGCATGCAC--AAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
13117436 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAATAGTTTAATGGCTACCGACAGCAA
385 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
* * *
13117501 ACCTGTAAAATCCCAAATGCTCTCTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
450 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * * *
13117566 GCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGTGCGCACCCCCTCGG-TCCCT
515 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCC
* * * * *
13117630 CGATCGTCGAAACCCCAATTCCATCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCGG
579 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
** * * ** *
13117695 TAAAGAAAAATGCGGTACCAGCACATGGCCGAGCCCAGCATACGCTGCCGTAACCCT
644 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
13117752 AAGTCAACAC
Statistics
Matches: 6783, Mismatches: 647, Indels: 630
0.84 0.08 0.08
Matches are distributed among these distances:
822 5 0.00
823 2 0.00
824 56 0.01
825 66 0.01
826 75 0.01
827 188 0.03
828 14 0.00
829 38 0.01
830 24 0.00
831 5 0.00
832 6 0.00
833 23 0.00
834 3 0.00
836 15 0.00
837 10 0.00
838 38 0.01
839 1 0.00
840 4 0.00
841 4 0.00
842 9 0.00
843 1 0.00
844 6 0.00
846 9 0.00
847 19 0.00
849 3 0.00
850 21 0.00
851 7 0.00
852 5 0.00
853 25 0.00
854 22 0.00
855 12 0.00
856 275 0.04
857 96 0.01
858 4 0.00
859 2 0.00
860 1 0.00
861 21 0.00
862 8 0.00
863 88 0.01
864 11 0.00
865 178 0.03
866 28 0.00
867 251 0.04
868 37 0.01
869 5 0.00
870 46 0.01
871 84 0.01
872 99 0.01
873 11 0.00
874 101 0.01
875 250 0.04
876 54 0.01
877 6 0.00
878 34 0.01
879 20 0.00
880 44 0.01
881 50 0.01
882 158 0.02
883 80 0.01
884 209 0.03
885 224 0.03
886 353 0.05
887 218 0.03
888 193 0.03
889 22 0.00
890 61 0.01
891 64 0.01
892 12 0.00
893 20 0.00
894 3 0.00
895 3 0.00
896 42 0.01
897 44 0.01
898 229 0.03
899 865 0.13
900 31 0.00
901 44 0.01
902 69 0.01
903 21 0.00
904 40 0.01
905 63 0.01
906 63 0.01
907 12 0.00
908 17 0.00
909 218 0.03
910 38 0.01
911 60 0.01
912 2 0.00
913 1 0.00
915 1 0.00
917 1 0.00
921 1 0.00
922 23 0.00
923 177 0.03
924 224 0.03
925 357 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGG
CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGG
GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGAT
Found at i:13111848 original size:16 final size:16
Alignment explanation
Indices: 13111824--13111854 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13111814 GACGAAACGA
*
13111824 GCGGGCGGGCGGGCAG
1 GCGGACGGGCGGGCAG
13111840 GCGGACGGGCGGGCA
1 GCGGACGGGCGGGCA
13111855 CTACGCCGGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.26, G:0.65, T:0.00
Consensus pattern (16 bp):
GCGGACGGGCGGGCAG
Found at i:13114221 original size:26 final size:26
Alignment explanation
Indices: 13114192--13114243 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13114182 CCAATCCGAT
*
13114192 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
13114218 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
13114244 TCAACCCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:13115093 original size:26 final size:26
Alignment explanation
Indices: 13115057--13115109 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13115047 CTGGTCCGAT
13115057 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13115083 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13115109 C
1 C
13115110 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13115971 original size:26 final size:26
Alignment explanation
Indices: 13115942--13115994 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13115932 TCCGGTCGAT
*
13115942 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
13115968 CTTAGACTGGGAAAGAATTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
13115994 C
1 C
13115995 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:13116592 original size:886 final size:892
Alignment explanation
Indices: 13112494--13117735 Score: 6292
Period size: 886 Copynumber: 5.9 Consensus size: 892
13112484 AATAAACTCT
* *
13112494 GTATGCCTAAGT-AA-CCA-GAAACGAGCGT--AGG-GCTCAGCCGACCAGAGGGGCGGGAT---
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * *
13112550 CAAGCCGGGGATCGGTCAGGT-CCCCTCT--GTGCTG-C-ATCTTGC-TGCGCAA-CCTG-TCTG
66 CAAGCCGGGGATC-GACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCAT-CGCAACCCTGATCTG
* * *
13112607 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA--CAACCGACGAAAGGA-CGGC-GGCG
129 GTCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCAGGCG
* * *
13112668 AACGGAC-GGCACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
194 -GCGGGCGGGCACTACGTC-GGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* **
13112731 GGTGGGTTTAGGCACATCTTCCTATTTCTGGATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
257 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
13112796 ACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGACCCGTTTTCTATTTTTAACG
322 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACG
* * * *
13112861 ATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
387 ATTTTCGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAA
* * * * * *
13112925 ATTTGGAAGACGTGATCCTTGTATTTTTTTTGGCAGGCACAAAAAAATTCAGCTAAAAACTCAAA
451 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAA
* *
13112990 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTTAAACACTTTAATGGCTACTGG
516 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
* * * *
13113055 CAGCAAACCTGTAAAATCTCCAATGCTTTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
581 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
13113120 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCGGCC
646 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCC
* * *
13113185 CTCC-CGATCGTCGGAACCCCAATGCCGCTGTTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
711 C-CCTCGATCGTCGAAACCCCAATGTCG--G-TCA-GTTCTCCGGT-ATGCTTCGACGATGGTGC
* * * *
13113249 CCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
770 CCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGG
* * * *
13113314 TCCAGTCCGATCTGAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAAAAAACTT-C
835 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAA-TTCC
*
13113372 GTATGCCTAAGTCAACCCACGAAACGA----GCGGGCG-T-A--C-GCTC--A--GTCGGG-T--
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC-CAGAGGGGCGGGATGC
* * * ** *
13113421 ---A-TC--GG-TCGA---GTACCCCTCTGCGTGCTGTCGATCCTGTTGTCGTAACCCTCGATCT
65 GCAAGCCGGGGATCGACGGGTCCCCCTCTGCGTGCTGCCGATCCTG-CATCGCAACCCT-GATCT
* * * * * *
13113476 GGTCCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
128 GGTCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-GGCAGG
* * * *
13113541 CGGGCGGGTGGGCACTACGCCGGCCTGAGAGAC-AGGATGCG-AAGCCGTGGATCAATAGGGTGG
192 C-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGGGTGG
** * * * * *
13113604 TAGGTGGGTTTAGGCATGTCTTGACATTTCTGCTTGCCAATGCCATTTTTATGGCTTTTAAATTC
255 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
** * *
13113669 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTACTTTTCA
320 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCA
* * * * *
13113734 CGATTTT-GAAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCGCC
385 CGATTTTCG-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCC
* * *
13113798 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAGAATTAAGCT-AAAAATCG
449 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCG
* *
13113862 AAGTGTAGAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT
514 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT
* *
13113927 GGCAGCAAAACTGTAAAATCTCAAATGCTC--T-----GGTGTGAATTCTCGAGGTTTGATGAGG
579 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
13113985 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCG
644 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCG
* * *
13114050 GCCTTCC-CGATCGTCGGAA-CCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGG
708 GCC-CCCTCGATCGTCGAAACCCCAAT---GTCGGTCA-GTTCTCCGGT-ATGCTTCGACGATGG
* * * *
13114113 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
767 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCT
** **
13114178 TAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTT-C
832 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAA-TTCC
* * *
13114239 GTA----T--GTCAACCCACAAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGTG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * *
13114298 CAAGCCGGGGATCGGTCGGGTCCCCCTCTTGC--GCTGCCAATCCTGCTACCGTAACCATCGGTC
66 CAAGCCGGGGATC-GACGGGTCCCCCTC-TGCGTGCTGCCGATCCTGC-ATCGCAACCCT-GATC
* * * *
13114361 TGGTCTGATCTTAGACTAGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAAC-A-----A--
127 TGGTCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCAGG
*
13114418 ------GCGGG---T--G--GG-C-G-G-G-CGA-A--CGCAAGCCGTGGATCGAGAGGGTGGTA
192 CGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
13114462 GGTGGGTTTAGGCACATATTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
257 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
13114527 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACAACTCGTTTTCTATTTTTCATG
322 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACG
* * * *
13114592 ATTTTTGAAAC-TTTTGACGGATCGACATTTTTTAAAATTTTTTC-GAATGGAGTTTTGGCCCCA
387 ATTTTCGAAACTTTTTG-CGGTTCGAGATTTTTTAAAATTTTTTCGGAA-GGATTTTTGGCCCCA
* * *
13114655 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAACATTCAGCTAAAAACTCGA
450 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGA
*
13114720 AGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTG
515 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTG
*
13114785 GCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGG
580 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
13114849 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCACCCC
645 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCC-CCCC
* * * *
13114914 GGCCCCCCCGATCGCCGGAACCCCAATGCCGCGGTCAGGTTCTCCGGTGATGC-TCTGACGATGG
707 GGCCCCCTCGATCGTCGAAACCCCAATG--TCGGTCA-GTTCTCCGGT-ATGCTTC-GACGATGG
* *
13114978 TGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGGCACAACCCT
767 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCT
* * * *
13115043 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
832 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAATTCC
* *
13115104 GTATGCCTAAGTCAACCCACGAAGCGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * *
13115169 CAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCCGATCCTAC-TGCCGCAACCCTCGGTC
66 CAAGCCGGGGATC-GACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCAT--CGCAACCCT-GATC
** * *
13115233 TGGTCCAATCTTAC-ACTGGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAACGAGC-G-A-
127 TGGTCTGATCTT-CGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCAG
*
13115294 GCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGG
191 GC-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGG
** * *
13115359 TAGGTGGGTTTAGTTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATTGCTTGTAAATTC
255 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * **
13115424 ATACAATGGTCCCTTAGGCCTTCACTTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
320 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCA
* *
13115489 CGATTTTGGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGG-CCCA
385 CGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCA
** * * *
13115553 AACTTGGTAGGTGTGATCCTTGTATTTCTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
450 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGA
* * *
13115618 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATTGCTACTG
515 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTG
* * *
13115683 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGG
580 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
13115748 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGC
645 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGC
* * * **
13115813 CCCCTCGATCGTCGGAACCCCAATGTC-GTC-GTT-T-AGGT-T-CTTCGGCGATACTGCCCCGA
710 CCCCTCGATCGTCGAAACCCCAATGTCGGTCAGTTCTCCGGTATGCTTCGACGATGGTGCCCCGA
* * *
13115872 CGAAGAAAAATACGACACCAACACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
775 CGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGG
13115937 T-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAATTCC
840 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAATTCC
* * * * * *
13115989 GTATGCCTAAGTCAACCCACGAAACGAGGGTGTGGGCGCTCAACCGGCCAGAGGGACGAGATTCG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
*
13116054 CAAGCCGGGGATCAGACGGGTCCCCCTCTGCGTGCTGTCGATCCTGCCATCGCAACCCTGATCTG
66 CAAGCCGGGGATC-GACGGGTCCCCCTCTGCGTGCTGCCGATCCTG-CATCGCAACCCTGATCTG
* * * * *
13116119 GTCTGATCTTCGACTAGGAATGAACTCCGTATACCTAAGTCAACTGATGAAATGAGCTGGCAGGC
129 GTCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-GGCAGGC
* * * * * *
13116184 AGGCAGGCGGGCACTACATCGGCCAGAGAGATGGGATGCGGAAGCCGTGGATCAATAGGGTGGTA
193 -GGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
13116249 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGGCATTTTTATGGCTTGTAAATTCAT
257 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
**
13116314 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCTATTTTTCATA
322 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACG
* * *
13116378 ATTTTCAAAAC-ATTTGCGGTTCGAGATTTTTTAAAATTTATTCGGAAGGATTTTTGGCCCCAAA
387 ATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAA
* *
13116442 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAAATTGAAG
452 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAG
* * *
13116507 TGTACAAGATTTTGTGACCATCTGAAAAAA-TGTCCCCATTCCAGACACTTTAATGGCTACTGGC
517 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGC
13116571 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
582 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
13116636 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGGA
647 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC--CCCCCCGGC
**
13116701 CCCCT-GATCGTCGAAACCAAAATGGCGTCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGC
710 CCCCTCGATCGTCGAAACCCCAAT---GTCGGTCA-GTTCTCCGGT-ATGCTTCGACGATGGTGC
**
13116765 CCC-AGCGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCG
770 CCCGA-CGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCG
* *
13116829 GTCCGGTCCGATATTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGC
834 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT--G---G------G-A---
13116894 TTAGACTGGGAATGAACTCC
884 --A-A----GAAT----TCC
* * *
13116914 GTATACCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * *
13116979 CAAG-C-GGGATCGATTGGGTCCCCCTCTGCATGCTGCCGATCCTG-TTGCTGCAACCCTCAGTC
66 CAAGCCGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCAT-C-GCAACCCTGA-TC
* * * * ** * *
13117041 CGATCTGATCTTAGATTGGGAATGAACTCTATATGCCTAAGCCAACCGATGAAACGAACGGGCGG
127 TGGTCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-GGCAG
* *
13117106 GCGGACGGGCGGGCACTACGCCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGG
191 GCGG-CGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGG
*
13117171 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
255 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
13117236 A-ACAATGGTCCCTTAAGCCTTCACGTGAA-CTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
320 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCA
* *
13117299 CGA-TTTCGAAACTTTTTGCGTTTC-AGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCC
385 CGATTTTCGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCC
* * *
13117362 AAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGAATGCACAAAAAAAAATT-AGCTAAAAATT
449 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC--AAAAAAATTCAGCTAAAAAAT
* *
13117426 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAATAGTTTAATGGCTA
512 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTA
* * * * *
13117491 CCGACAGCAAACCTGTAAAATCCCAAATGCTCTCTAAGGGCGTGTGAGTTCTCGAGGTTTGATGA
577 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
13117556 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGTGCGCACCCCC
642 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGTGCGCACCCCC
* * * * *
13117621 TCGG-TCCCTCGATCGTCGAAACCCCAATTCCATCGGTCAGGTTCTCCAACG-ATGCTCCGACGA
705 CCGGCCCCCTCGATCGTCGAAACCCCAA-T--GTCGGTCA-GTTCTCC--GGTATGCTTCGACGA
*** * *
13117684 TGGTGCCCCGGTAAAGAAAAATGCGGTACCAGCACATGGCC-GAGCCCAGCAT
764 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT-GCCTGAGCCCAGCAT
13117736 ACGCTGCCGT
Statistics
Matches: 3817, Mismatches: 354, Indels: 339
0.85 0.08 0.08
Matches are distributed among these distances:
855 10 0.00
856 237 0.06
857 99 0.03
858 1 0.00
859 3 0.00
860 1 0.00
861 19 0.00
862 8 0.00
863 83 0.02
864 13 0.00
865 175 0.05
866 14 0.00
867 245 0.06
868 29 0.01
869 5 0.00
870 50 0.01
871 79 0.02
872 92 0.02
873 7 0.00
874 100 0.03
875 248 0.06
876 30 0.01
877 1 0.00
878 13 0.00
879 6 0.00
880 5 0.00
881 7 0.00
882 2 0.00
883 3 0.00
884 56 0.01
885 155 0.04
886 339 0.09
887 150 0.04
888 175 0.05
889 4 0.00
890 4 0.00
891 8 0.00
892 1 0.00
893 7 0.00
894 3 0.00
895 4 0.00
896 33 0.01
897 8 0.00
898 232 0.06
899 305 0.08
900 8 0.00
901 1 0.00
904 1 0.00
910 1 0.00
911 1 0.00
916 1 0.00
917 1 0.00
921 5 0.00
922 25 0.01
923 176 0.05
924 218 0.06
925 296 0.08
926 4 0.00
927 10 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
CAAGCCGGGGATCGACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCATCGCAACCCTGATCTGGT
CTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCAGGCGGC
GGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTT
TCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCCCCCTC
GATCGTCGAAACCCCAATGTCGGTCAGTTCTCCGGTATGCTTCGACGATGGTGCCCCGACGAAGA
AAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAATTCC
Found at i:13116878 original size:26 final size:26
Alignment explanation
Indices: 13116842--13116917 Score: 127
Period size: 26 Copynumber: 2.9 Consensus size: 26
13116832 CGGTCCGATA
13116842 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
13116868 TTAGACTGGGAATGAAC-TCTGTATGC
1 TTAGACTGGGAATGAACTTC-GTATGC
*
13116894 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTTCGTAT
13116918 ACCTAAGTCA
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
25 2 0.04
26 44 0.94
27 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATGC
Found at i:13117732 original size:925 final size:925
Alignment explanation
Indices: 13115942--13117735 Score: 2626
Period size: 925 Copynumber: 1.9 Consensus size: 925
13115932 TCCGGTCGAT
* * *
13115942 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAATTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTATACCTAAGTCAACAC
* * * *
13116007 ACGAAACGAGGGTGTGGGCGCTCAACCGGCCAGAGGGACGAGATTCGCAAGCCGGGGATCAGACG
66 ACGAAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGGACGAGATGCGCAAGCCGGGGATCAGACG
* * * * * *
13116072 GGTCCCCCTCTGCGTGCTGTCGATCCTGCCATCGCAACCCTGATCTGGTCTGATCTTCGACTAGG
131 GGTCCCCCTCTGCATGCTGCCGATCCTGCCATCGCAACCCTCATCCGATCTGATCTTAGACTAGG
* * * * * *
13116137 AATGAACTCCGTATACCTAAGTCAACTGATGAAATGAGCTGGCAGGCAGGCAGGCGGGCACTACA
196 AATGAACTCCATATACCTAAGCCAACCGATGAAACGAACGGGCAGGCAGGCAGGCGGGCACTACA
* * * * *
13116202 TCGGCCAGAGAGATGGGATGCGGAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATC
261 CCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATC
*
13116267 TTCATATTTCTACATGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
326 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
13116332 TTCACGTGAAGTTTCATGGCAAGACACTCGTTTTCTATTTTTCATAATTTTCAAAACATTTGCGG
391 TTCACGTGAAGCTTCATGGCAAGACACTCGTTTTCTATTTTTCACAATTTTCAAAACATTTGCGG
13116397 TTCGAGATTTTTTAAAATTTATTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
456 TTCGAGATTTTTTAAAATTTATTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
13116462 TATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAAATTGAAGTGTACAAGATTTTGTGACCA
521 TATTTTTCTTGGAATGCACAAAAAAATTCAACTAAAAAATTGAAGTGTACAAGATTTTGTGACCA
* * * *
13116527 TCTGAAAAAATGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
586 TCTGAAAAAATGTCCCCATTCCAAACACTTTAATGGCTACCGACAGCAAACCTGTAAAATCCCAA
* *
13116592 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
651 ATGCTCTCTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
*
13116657 AGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGGACCCCTGATCGTCGAAACCAAA
716 AGTACCAGAACCCATCGCACATCATGTGCGCACAACCCCCCGGACCCCTGATCGTCGAAACCAAA
* * *** * *
13116722 ATGGCGTCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCCAGCGAAGAAAAATACGGCA
781 ATGCCATCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAATACGGCA
13116787 CCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATATTAGACTGGG
846 CCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATATTAGACTGGG
13116852 AATGAACTTCGTATG
911 AATGAACTTCGTATG
* *
13116867 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACAC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTATACCTAAGTCAACAC
* * * *
13116932 ACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAG-C-GGGATC-GATT
66 ACGAAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGGACGAGATGCGCAAGCCGGGGATCAGA-C
* *
13116994 GGGTCCCCCTCTGCATGCTGCCGATCCTG--TTGCTGCAACCCTCAGTCCGATCTGATCTTAGAT
130 GGGTCCCCCTCTGCATGCTGCCGATCCTGCCAT-C-GCAACCCTCA-TCCGATCTGATCTTAGAC
* * * * *
13117057 TGGGAATGAACTCTATATGCCTAAGCCAACCGATGAAACGAACGGGCGGGC-GGACGGGCGGGCA
192 TAGGAATGAACTCCATATACCTAAGCCAACCGATGAAACGAACGGGCAGGCAGG-CAGGCGGGCA
* *
13117121 CTACGCCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
256 CTACACCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGC
*
13117186 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA-ACAATGGTCCCTT
321 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
13117250 AAGCCTTCACGTGAA-CTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTCGAAACTT
386 AAGCCTTCACGTGAAGCTTCATGGCAAGAC-ACTCGTTTTCTATTTTTCACAATTTTCAAAAC-A
* * *
13117313 TTTGCGTTTC-AGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGT
449 TTTGCGGTTCGA-GATTTTTTAAAATTTATTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGT
*
13117377 GATCCTTGTATTTTTCTTGGAATGCACAAAAAAAAATT-AGCT-AAAAATTCGAAGTGTACAAGA
513 GATCCTTGTATTTTTCTTGGAATGCAC--AAAAAAATTCAACTAAAAAATT-GAAGTGTACAAGA
* * * *
13117440 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAATAGTTTAATGGCTACCGACAGCAAACCT
575 TTTTGTGACCATCTGAAAAAA-TGTCCCCATTCCAAACACTTTAATGGCTACCGACAGCAAACCT
13117505 GTAAAATCCCAAATGCTCTCTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
639 GTAAAATCCCAAATGCTCTCTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
13117570 ATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGTGCGC-ACCCCCTCGG-TCCCTCGA
704 ATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACAACCCCC-CGGACCCCT-GA
** * * *
13117633 TCGTCGAAACCCCAATTCCATCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCGGTAA
767 TCGTCGAAACCAAAATGCCATCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCAGCAA
* * * *
13117698 AGAAAAATGCGGTACCAGCACATGGCCGAGCCCAGCAT
832 AGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCAT
13117736 ACGCTGCCGT
Statistics
Matches: 773, Mismatches: 82, Indels: 28
0.88 0.09 0.03
Matches are distributed among these distances:
921 1 0.00
922 25 0.03
923 183 0.24
924 218 0.28
925 346 0.45
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (925 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTATACCTAAGTCAACAC
ACGAAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGGACGAGATGCGCAAGCCGGGGATCAGACG
GGTCCCCCTCTGCATGCTGCCGATCCTGCCATCGCAACCCTCATCCGATCTGATCTTAGACTAGG
AATGAACTCCATATACCTAAGCCAACCGATGAAACGAACGGGCAGGCAGGCAGGCGGGCACTACA
CCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGCTTCATGGCAAGACACTCGTTTTCTATTTTTCACAATTTTCAAAACATTTGCGG
TTCGAGATTTTTTAAAATTTATTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTCTTGGAATGCACAAAAAAATTCAACTAAAAAATTGAAGTGTACAAGATTTTGTGACCA
TCTGAAAAAATGTCCCCATTCCAAACACTTTAATGGCTACCGACAGCAAACCTGTAAAATCCCAA
ATGCTCTCTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGAACCCATCGCACATCATGTGCGCACAACCCCCCGGACCCCTGATCGTCGAAACCAAA
ATGCCATCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAATACGGCA
CCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATATTAGACTGGG
AATGAACTTCGTATG
Found at i:13118634 original size:26 final size:26
Alignment explanation
Indices: 13118596--13118650 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
13118586 TGGTACGATT
*
13118596 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
13118622 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
13118648 TTA
1 TTA
13118651 AGTCAACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:13119499 original size:26 final size:26
Alignment explanation
Indices: 13119468--13119520 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13119458 CCGGTATGAT
* *
13119468 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13119494 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13119520 C
1 C
13119521 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13119976 original size:877 final size:881
Alignment explanation
Indices: 13117749--13120967 Score: 4021
Period size: 877 Copynumber: 3.6 Consensus size: 881
13117739 CTGCCGTAAC
* *
13117749 CCTAAGTCAACACACGAAACGAGCGTGCAGGGCGGTCAGCCAGCCAGAGGGGCGGGATGCGCAAG
1 CCTAAGTCAACACACGAAACGAGCGTGC-GGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAG
** * * * *
13117814 CCGGGGATCG-TTGGGTCCCCCTCTGCATGCTGCCGATCTTGTTGCTGCAA-CCTTCAGTCCGAT
65 CCGGGGATCGACCGGGTCCCCCTC-GCGTGCTGCCGATCCTGCTGCAGCAACCCTT-AGTCCGAT
* *
13117877 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGG
128 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGG
* *
13117942 GCTGGCGGGCACTACGTCAGCCAGAGAGATA--GGATGCGCAAGCCGTGGATCGATAGGGTGGTA
193 GCGGGCGGGCACTACGTC-GCCA-AAAGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
***
13118005 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
256 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
13118070 ACAAAGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTATGTATTTTTCATG
321 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
*
13118135 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAA
386 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
* * * *
13118200 -TTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAG
451 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTACACAAAAAAATTCAGCTAAAAACTCGAAG
* *
13118264 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACGCTTTAATGGCTACTTGC
516 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGC
* * * *
13118329 AGAAAATCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGAT
581 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
13118394 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
646 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * * * *
13118459 CCCCTGATCGTGGAA-CCTAATTCCGTCGGTCAGGTTCTGCAGCGATGCTCAGGCTATGGTGCCC
711 CCCCCGATCGCGGAACCCCAATGCCGTCGGTCAGG---T------ATGCTC---C-A-CGAG---
* * * * *
13118523 CGGTGAAGAAAAATACGGCACCAGCACATG-CTGAGCACAACATGTGCTACCGCAA-CCTCAGTC
759 C-G-GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* *
13118586 TGGTACGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATG
822 TGGTACGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG-GAATGAACTCCGTATG
* * *
13118647 CTTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTAGGATGCGCAAGT
1 CCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGC
* *
13118712 CGGGGATC-AGCCGGGTCCCCCTCTGCGTACTGCCGATCCTGCTGTC-GTAACCCTCT-GTCCGA
66 CGGGGATCGA-CCGGGTCCCCCTC-GCGTGCTGCCGATCCTGCTG-CAGCAACCCT-TAGTCCGA
* * *
13118774 TCCAATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGC--G--GGCG
127 TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCG
* * * *
13118835 GGCGGGCAGGCACTACGCCAGCC-AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
192 GGCGGGCGGGCACTACGTC-GCCAAAAGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
13118899 GGCGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGGCATTTTTCTGGCTTGTAAATTCAT
256 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
13118964 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCTAGACGACTCGTTCTCTATTTTTCACG
321 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * * * *
13119029 ATTTTCAAAACTTTTTACGGTTCGAGATTTTTTACAATTTATTC-AGAAGGATTTTTGGCCCCAA
386 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAA
* *
13119093 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGACGTACACAAAAAAATTCAGCTAAGAACTCGAA
450 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTACACAAAAAAATTCAGCTAAAAACTCGAA
* *
13119158 GTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAAACACTTTAATGGCTACTGG
515 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAG
* * * *
13119223 CAGCAAACCTGTAAAATCTCAAATGGTCTTTAAGGGGGAGTGAGTTTTCGTGGTTTGATGAGGGA
580 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
13119288 TAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-GCACATCATGTGCGCACACCCCCTGGC
645 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* *
13119352 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAAGT-T-CT-C-CGA-C-GAAGAAACATGCG
710 CCCCCCGATCG-CGGAACCCCAATGCCGTCGGTCAGGTATGCTCCACGAGCGGAAGAAAAATGCG
* *
13119411 GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTATGATCTTAGACT
774 GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTACGATCTTAGACT
13119476 GGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATG
839 GGGAATGAACTCTGTATGCTTAGACT-GGAATGAACTCCGTATG
* *
13119520 CCTAAGTCAAC-CAACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAG
1 CCTAAGTCAACAC-ACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAG
* * * * * * *
13119584 TCGGGGATCGACCGGGTCCCCCTCGATGTGCTGTCGATCCTACTGCAACAACCCTTGGTCCGGTC
65 CCGGGGATCGACCGGGTCCCCCTCG-CGTGCTGCCGATCCTGCTGCAGCAACCCTTAGTCCGATC
** *
13119649 TGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGG
129 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGG
* * * *
13119714 CGGGTGGGCACTACGTCGGCAAAAGATACGGGATGCGCAAGCTGTGGATCGATAGGGCTGG-AAG
194 CGGGCGGGCACTACGTCGCCAAAAGATACGGGATGCGCAAGCCGTGGATCGATAGGG-TGGTAGG
* **
13119778 TGGGTTTAGTCACATCTTCATATTTCTGCATGCCAACACCATTTTTATGGCTTGTAAATTCATAC
258 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
13119843 AATGGTCCCTTAAGGCTTCACGTGAAGTTCCATGGCAAGACGACTCCTTTTCTATTTTTCATGAT
323 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* *
13119908 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-AGAACGAATTTTGGCCCCAAAC
388 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAAC
* * * *
13119972 TTGGTAGACATGATCCTTGTATTTTTGTTGGCAG-GCATAAAAAAATTCATCTAAAAACAT-GAA
452 TTGGTAGACGTGATCCTTGTATTTTTGTTGGC-GTACACAAAAAAATTCAGCTAAAAAC-TCGAA
* * *
13120035 GTGTACAAG-TTTTGTGA-CATTTGAAAAAAGTGTCCCCATTTTATTCATCAGCTTATAACGGCT
515 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA---AACA-CTT-TAATGGCT
*
13120098 ACTAGCAGCAAACCTGTAAAAATCTCAAAATGCTAACGTATAAAGGGGCGTGTGAGTTCTCGAGG
575 ACTAGCAGCAAACCTGT-AAAATCTC-AAATGCT--C-T-TTAAGGGG-GTGTGAGTTCTCGAGG
*
13120163 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGC
633 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
13120228 ACACCCCCCGGCCCCCCCGATCATCAGAACCCCAATGCCTTCGGTTAGGTTCTCCGGTGATGCTC
698 ACACCCCCCGGCCCCCCCGATC-GCGGAACCCCAATG-C--C-G-TCGG---TCAGGT-ATGCTC
* * *
13120293 CGACGATGGTGCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCGGCATGTGGTGCC
753 C-ACGA----G--C-G-GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
* * * *
13120358 GCAACCTTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGATTGGGAATGAA
809 GCAACCCTCGGTCTGGTACGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT-GGAATGAA
*
13120423 CTCTGTATG
873 CTCCGTATG
* * * *
13120432 CCTAAGTCAGCCCACGAAACGAGCGTGCGGGTGCTCAGTC-GACCAGAGGGGTGGGATGCGCAAG
1 CCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGTGGGATGCGCAAG
* * * * * * *
13120496 CCGGGGATCGGCTGGGTCCCCCTCTACATGCTGCCGATCCTGCTG-ACGCAACCCTCAGTCTGGT
65 CCGGGGATCGACCGGGTCCCCCTC-GCGTGCTGCCGATCCTGCTGCA-GCAACCCTTAGTCCGAT
* * * * * * * *
13120560 CTAACCTTGGACTGGGAATGAACTCTGTATGTCT-AGCCAACCGACGAAACAAGCGGGCGGGTGG
128 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGG
* * * * *
13120624 GCGGGCGGGCACTACGTCGACCAAAA-AAACGGGATGGGCAAGCCATGGATTGATAAGGTGGTAG
193 GCGGGCGGGCACTACGTCG-CCAAAAGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
13120688 GTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATTCCATTTTTATGGCTTGTAAATTCATA
257 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
13120753 CAATGGCCCCTTAAGCCTTCACGTGAAGTTTCAAGGTAAGACGACTCGTTTTTCTATTTTTCACG
322 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACG
*
13120818 ATTTTTGAAACTTTTTACGGTTC--GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAG
386 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
** *
13120881 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCAC-AAAAAATTCAGCTAAAAACTCGAAG
451 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTACACAAAAAAATTCAGCTAAAAACTCGAAG
*
13120945 TGTACAAGATTTTCTGACCATTT
516 TGTACAAGATTTTGTGACCATTT
13120968 AGCCGGCTTG
Statistics
Matches: 2035, Mismatches: 209, Indels: 141
0.85 0.09 0.06
Matches are distributed among these distances:
871 24 0.01
872 26 0.01
873 218 0.11
874 3 0.00
875 25 0.01
876 10 0.00
877 290 0.14
878 9 0.00
879 3 0.00
880 23 0.01
881 9 0.00
882 6 0.00
884 1 0.00
885 3 0.00
886 8 0.00
887 60 0.03
888 48 0.02
889 1 0.00
891 1 0.00
892 7 0.00
893 5 0.00
894 266 0.13
895 216 0.11
896 21 0.01
897 41 0.02
898 117 0.06
899 6 0.00
900 2 0.00
902 3 0.00
908 1 0.00
909 31 0.02
910 79 0.04
911 183 0.09
912 288 0.14
913 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (881 bp):
CCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGC
CGGGGATCGACCGGGTCCCCCTCGCGTGCTGCCGATCCTGCTGCAGCAACCCTTAGTCCGATCCA
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCG
GGCGGGCACTACGTCGCCAAAAGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCGTACACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
GATCGCGGAACCCCAATGCCGTCGGTCAGGTATGCTCCACGAGCGGAAGAAAAATGCGGCACCAG
CACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTACGATCTTAGACTGGGAATG
AACTCTGTATGCTTAGACTGGAATGAACTCCGTATG
Found at i:13120409 original size:26 final size:26
Alignment explanation
Indices: 13120380--13120432 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13120370 CTGGTCCGAT
13120380 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
13120406 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
13120432 C
1 C
13120433 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:13121069 original size:26 final size:26
Alignment explanation
Indices: 13121040--13121089 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13121030 GACTTAGGCG
*
13121040 TATGGAGTTCATTCCCAGTCTAAGCA
1 TATGGAGTTCATTCCCAATCTAAGCA
13121066 TATGGAGTTCATTCCCAATCTAAG
1 TATGGAGTTCATTCCCAATCTAAG
13121090 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
TATGGAGTTCATTCCCAATCTAAGCA
Found at i:13121962 original size:26 final size:26
Alignment explanation
Indices: 13121912--13121964 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13121902 GTTGACTTAG
* * * *
13121912 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
13121938 GCATACGGAGTTCAATCCCAATCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
13121964 G
1 G
13121965 ATAGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAATCTAA
Found at i:13122847 original size:26 final size:26
Alignment explanation
Indices: 13122807--13122857 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13122797 TGACTTAGGT
* *
13122807 ATACGGAGTTGATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
13122833 ATACAGAGTTCATTCTCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
13122858 ATCAGACCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:13123471 original size:901 final size:900
Alignment explanation
Indices: 13121584--13124656 Score: 4387
Period size: 901 Copynumber: 3.4 Consensus size: 900
13121574 TAGTCGTCTT
*
13121584 ACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
** * * *
13121649 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTTTCTGG-CCAGCGTAGTGCT
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGA-CGTAGTGCC
* * * * * ** *
13121713 GTCCCGCCCGTCCGCTCGTTCGTTTCGTCGAGAGGCTTAGGCATACGGAGTTCATTCCAAGTCTA
130 G-CCCGCCCGCCCACCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * *
13121778 AGATTGGATCGGACCGAGGGTTGTGGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGC-CTA
194 AGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGGGACCCGGCTCGA
* * *
13121842 TCCCCGACTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCTGCACGCTCGTTTCATGGGTTGA
258 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* * * *
13121907 CTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAATCCCAATCTAAGAT-AGGA
323 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-GA
** * *
13121971 TCGGATCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
387 -CCAATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
* **
13122036 TCGGGGCA-C--CATC---G---C-CGGAGAACCTGACCGACGGCATTAGGGTTCCGGTGATCAG
451 TCGGGGCACCATCATCGGAGCATCGCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAG
* *
13122091 GGGGGCCGAGTGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
516 GGGGGCC-AGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
13122156 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGT
580 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
13122221 TTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTT
645 TTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
13122286 GTACACTTC-AGTTTTTAGCTGAATTCTTTTATGCATGCCGACAAAAATACAAGGATCACGTCTA
710 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTA
*
13122350 CCAAATTTGGGG-TAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
775 CC-AATTTGGGGCT-AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
* * *
13122414 GAATATCGTGAAAAATAGAAAACGAGTCGTCTTGCGATGAAACTTCACGTGAAGTCTTAAGGG
838 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
13122477 ACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
*
13122542 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGACGTAGTGCCC
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTG-CC
** * *
13122607 GCCCGCCCGCCCACCCGCTCGTTTTGTCAATTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAA
130 GCCCGCCCGCCCACCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
13122672 GATCAAACCAGACTGAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGAGGGAGACCCGGCT-GAT
195 GATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG-GACCCGGCTCGAT
* *
13122736 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
259 CCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
* * * *
13122801 TTAGGTATACGGAGTTGATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGACC
324 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * *
13122866 ACACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCC
389 A-ATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC
13122931 GGGGCACCATCATCGGAGCATCGCTGGAGAACCT-ATCCGACGGCATTGGGGTTCCGACGATC-G
453 GGGGCACCATCATCGGAGCATCGC-GGAGAACCTGA-CCGACGGCATTGGGGTTCCGACGATCAG
*
13122994 GGGGGCCAG-GGGGTGTGCGCACATGATGTGCGATGGGTCCTGGTACTTGGCCCTTATATTGGCC
516 GGGGGCCAGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
13123058 CCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTTAGATTTTACAGGTT
581 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
13123122 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTG
646 TGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
13123187 CACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGGTCACATCTAC
711 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAC
* * * * *
13123252 CAAGTTTGGGGCTAAAATTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAATTTTGA
776 CAA-TTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGA
*
13123317 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
840 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
13123378 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATTTGAAGATCTGCCTA
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * *
13123443 AACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTG-CC
* **
13123508 GCCCGCCCG-CCAGCCCGCTTGTTTCATCGGATTGGCTTAGGTGTACGGAGTTCATTCCCAGTCT
130 GCCCGCCCGCCCA-CCCGCTCGTTTCATC-GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
13123572 AAGATTGGACCAGAC-CATGGTTGCAGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACTCG
193 AAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG-AGGGGACCCGGCTCG
* * * * *
13123636 ATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCCTGGGTTG
257 ATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* *
13123701 ACTTAGGCATACGGA-TTCCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGG
322 ACTTAGGCATACGGAGTT-CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
*
13123765 ATCGAATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
386 A-CCAATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
* * *
13123830 GTCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAACGGCATTGGGGTTCCGACGATC
450 GTCGGGGCACCATCATCGGAGCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * *
13123895 GGGGGGGTCAGGGAAGGGGATGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATA
514 AGGGGGGCCA--G-AGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
13123960 TTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
575 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
13124025 CAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAA
640 CAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
13124089 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCAC
705 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
13124154 CTCTACCAA-TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCCCAAAAAGT
770 ATCTACCAATTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGT
* *
13124218 TTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGG
835 TTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
13124283 G
900 G
* * * *
13124284 ACCATTGTATGAATTTACCAGCCATAAAAATGGCATTTGCATGTC-GAAATATGAAGATGTGCGT
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG-CAGAAATATGAAGATGTGCCT
*
13124348 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGACGTAGT---
65 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCC
* * * * * *
13124410 GCCTGCCCGCCTA----CTCATTTCATCGGTTAGCTTAGGCATACGGACTTCATTCCCAGTCTAA
130 GCCCGCCCGCCCACCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
13124471 GATCGGACTGGACTGAGGGTTGCTGCAGCAGGATCGACAGCATGCATAAGGGGACCCGG-TCGAT
195 GATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA-GAGGGGACCCGGCTCGAT
* * *
13124535 CCCCGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGAC
259 CCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
* *
13124600 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAG
324 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
13124657 CATGCGGAGT
Statistics
Matches: 1960, Mismatches: 179, Indels: 78
0.88 0.08 0.04
Matches are distributed among these distances:
892 4 0.00
893 396 0.20
894 6 0.00
896 4 0.00
897 155 0.08
898 48 0.02
899 1 0.00
900 104 0.05
901 426 0.22
902 292 0.15
903 24 0.01
904 32 0.02
905 1 0.00
906 226 0.12
907 5 0.00
908 167 0.09
909 69 0.04
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (900 bp):
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCG
CCCGCCCGCCCACCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGACCCGGCTCGATCC
CCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAA
TCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
GCACCATCATCGGAGCATCGCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGG
CCAGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAATT
TGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
Found at i:13123736 original size:26 final size:25
Alignment explanation
Indices: 13123707--13123766 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
13123697 GTTGACTTAG
13123707 GCATACGGATTCCATTCCCAGTCTAA
1 GCATACGGATT-CATTCCCAGTCTAA
*
13123733 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGA-TTCATTCCCAGTCTAA
13123759 G-AT-CGGAT
1 GCATACGGAT
13123767 CGAATCGAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 1 0.03
24 3 0.10
25 2 0.06
26 23 0.74
27 2 0.06
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (25 bp):
GCATACGGATTCATTCCCAGTCTAA
Found at i:13124634 original size:26 final size:26
Alignment explanation
Indices: 13124604--13124671 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
13124594 GTTGACTTAG
13124604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
13124630 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13124656 GCATGCGGAGTTCATT
1 GCATACGGAGTTCATT
13124672 TCATCGGGGC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13126248 original size:26 final size:26
Alignment explanation
Indices: 13126218--13126270 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13126208 GTTGACTTAG
*
13126218 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13126244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13126270 G
1 G
13126271 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13127150 original size:25 final size:26
Alignment explanation
Indices: 13127116--13127170 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 26
13127106 GGGTTGACTT
13127116 TAAGCATACGGAGTTCA-TTCCAGTC
1 TAAGCATACGGAGTTCATTTCCAGTC
13127141 TAAGCATACGGAGTTCATTTCCAGTC
1 TAAGCATACGGAGTTCATTTCCAGTC
13127167 TAAG
1 TAAG
13127171 ATCGAACTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 17 0.59
26 12 0.41
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTTCCAGTC
Found at i:13128951 original size:26 final size:26
Alignment explanation
Indices: 13128914--13128966 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13128904 GTTGACTTAG
13128914 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
13128940 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13128966 G
1 G
13128967 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13129195 original size:896 final size:895
Alignment explanation
Indices: 13125346--13131307 Score: 7957
Period size: 896 Copynumber: 6.7 Consensus size: 895
13125336 GTTGACTTAG
* * * * *
13125346 GCATACAGAGTTCATTCTCAG-CATAAGATC-AGACTAGACTGAGGGTGGCGACAGCACATGCTG
1 GCATACGGAGTTCATTC-CAGTC-TAAGATCGA-AC-GGACCGAGGGTTGCGGCAGCACATGCTG
* ** * * * *
13125409 GGCTCGGTCATGTGCTGGTGCCATAATTTTCTTCGTC-GGGTACCATCGCCAGAGCATCACCGGG
62 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCC-GG
* ** * *
13125473 AGAACCTGATCGGCAGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGTGTGTGCGTACATGATGT
126 AGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
* ** * * * *
13125538 GCTATGGGTGCTGGTACTTGTTCCTGATATTGGACCCCTATCCCTCATCAAATCTCAAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
13125603 CACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCTA-TGGCCATTAAAGGGTCTGAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAA
*
13125667 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
13125732 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGACCAAAACTCCTTCCGAAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
** * *
13125797 AAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCTTAAAAAATAGAAAACGAGTCGTC
449 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
13125862 TTGCCATGAAAGTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
13125927 CATTGGCACACAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTG
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
13125992 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCTCGTTCCGTCGATTGGCTT
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
13126057 AGGCATACGCAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCACCAGGATTGA
709 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * *
13126122 TAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGC
774 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCTGGCTGAGC
* * *
13126187 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAA
839 ACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
13126244 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGGTGGCACATGCTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATC-GAACGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
13126309 CTCGGGCATGTGTTGGTGTCGCA-TTTTCTTCGTCGGGGTACCATTGCCAGAGCATCGTCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
13126373 ACCTGACCGGCGACATTGGGGTTCCGACGATCAGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
129 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
13126438 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
13126503 CCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
13126568 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAA-TTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
13126632 CATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAT
*
13126697 TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
13126762 CATGAAACTTCATGTGAAGGGTTAAGGGACCATTGTTTGAATTTACAAGTCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
13126827 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
583 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
13126892 TCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCTCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTA
648 TCCCGTCTCTCTGGCCGGCGTAGTGCCCG---CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * ** *
13126957 GGCATACAGAATTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGGCAGCAGGATTGGC
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * * *
13127022 AGCACGTC-GAGAGGGACCCGGCCGATCCCCGGCTTTGCGCATCGCCGTCGCTCTGTGCCGACTG
775 AGCACG-CAGAGGGGGACCCGACCGATCCCCGAC-TTACGCATC-CCGCCCCTCTG-GCTGGCTG
* *
13127086 AGCACCCACAC-C-CATTTCGTGGGTTGACTTTAAGCATACGGAGTTCATT-CCAGTCTAA
836 AGCACCCGCACGCTCATTTCGTGGGTTGAC-TTAGGCATACGGAGTTCATTCCCAGTCTAA
*
13127144 GCATACGGAGTTCATTTCCAGTCTAAGATCGAACTGGACCGAGGGTTTGCGGC-GCACATGCTGA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCGAAC-GGACCGAGGG-TTGCGGCAGCACATGCTGG
* * * *
13127208 GCTTCGATGCCATGTGCTGGTG-CGCATTTTTCTTCGTCCGGGCACCATCAACCGGAGCA-C-AC
63 GC-TCG--GGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATC-GCCGGAGCATCGCC
13127270 GCG-G----TGATCGGCGGCATTGGGGTTCC-AGCGATCGGGGGGCCGGAGAGGGTGTGCGCACA
124 G-GAGAACCTGATCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCCGG-G-GGGTGTGCGCACA
** *
13127329 TGATGTGCGATGGGTTATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TAG
185 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-
* *
13127393 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAATG
249 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
13127458 TCTGAAATGAGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
314 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
13127523 TTTTTATGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAGGTTTGTGGCCAAAACTCCTT
379 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
*
13127588 CCGAAAAACTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
444 CC-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
13127653 GTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
508 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * * *
13127718 AAATGGCTTTGGCATGTAAAAATATGAAGATGTGCCTAAATCCAACTACCACCCTATCGATCCAT
573 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
13127783 GGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCTCATTTCGT
638 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCGCTCGTTTCGT
* * * * * * *
13127848 CGGTTGGCTTAGGCATATGGAGTTCATTTCTAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCA
699 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCA
* * * ** * *
13127913 GTAGGATCGGCAGCACACAGAGGGGGACCC-AGTCGATCCCCGGTTTATGCGTCCCGCCCCTCTG
764 GCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGACTTACGCATCCCGCCCCTCTG
* * * * * * *
13127977 GCTGGCTGAACGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATA
828 GCTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
13128042 TAA
893 TAA
* * * *
13128045 GCATATGGAGTTGATTCCCAGTCTAAGATCGATA-GGACCGAGGGTTGCGACAGCACATGTTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGA-ACGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
13128109 TCTCGGGCATGTACGGGTACCGCATTTTTCTTCGTCAGCGCACCATCGTC-GAACTATCGTC-GA
64 -CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGC-ATCGCCGGA
* *
13128172 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
127 GAACCTGATCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATG
*
13128237 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
13128302 ACACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13128367 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
13128432 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
13128496 AATTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
450 AA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
13128561 TTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
13128625 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTG
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
13128690 CACATCCCGTCTCTCTGGCCGGCATAGTGCCCGTCCCG-CCG-CCGCTCGTTTTGTCGGTTGGCT
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
13128753 TAGGCATATGGAGTTCATT-CCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCG
708 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCG
* * ** *
13128817 GTAGCACGCAGATGGGGACCCGACCGATCCCCGACTTGTGCATCTCGCCCCTCTGGCTGGCTGAG
773 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCTGGCTGAG
*
13128882 CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
838 CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13128940 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACTGGATCGAGGGTTGCGACAGCAAATGCTGGG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGAAC-GGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
13129005 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGTC-GGGTCACTATCATCGGAGCATCGCCAGAG
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGG-CACCATCGCCGGAGCATCGCCGGAG
* *
13129069 AACCTGATCTGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
128 AACCTGATCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
13129134 GCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
13129199 CACCTCCC-TAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAA
256 CACC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
13129263 ATGGGTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
13129328 TGTGCAT-CCAACAAAAATAAAAGGATCACGTCTATCGAGTTTAGGGCCAAAACTCCTTTCGAAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAA
* * * * * *
13129392 AAATTTTAAAAAATCTTGAACCGTAAAAGGTTTCAAAAATCATGAAAAATGGAAAATGAATCGTC
449 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
13129457 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
13129522 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACTGCTTG
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
13129587 CGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGATTG
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
13129652 GCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGTAGCAGTAGGA
705 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGA
* * *
13129717 TCAGCAGCACGCAGAGGGGGACCCGACCGATCCCTGACTTACGCATCCCGCCCTTCTGGCCT-GC
770 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGG-CTGGC
* *
13129781 TGAACACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
834 TGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
13129839 -C-TA---AG---A---C---C--AGA-C---CGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
1 GCATACGGAGTTCATTCCAGTCTAAGATCGAACGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * ** * *
13129884 CGGGCATGTGTTGGTGCTGTATTTTTCTTTATCAGGGCACCATCGTCGGAGCATCGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGAAC
* * *
13129949 CTGA-CTGGCGGCATTGGGGTTCAGACAATCGGGGGGCC-GGAGG-G-G-G--C--GA--T--GA
131 CTGATC-GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * *
13130001 ---GTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * * *
13130063 CCCTTAAAGTGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAATGAG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
13130128 TACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * * *
13130193 ATGCCAAAAAAAATACAAGAATCACATCTACCAAGTTAGAGGCCAAAACACCTTCCGAAATAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATT
* * * *
13130258 TTAAAAAATAC-AGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACCAGTCGTCTTGC
454 TTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
13130322 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
13130387 GGCATGCA-AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
583 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
13130451 TCCCATCTTTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTTGTCTGTTGCCTTAGGC
648 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* *
13130512 ATACGGAGTTCATTCCCAGTCTAGGATCAGGCCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGC
713 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGC
* * ** ** * *
13130577 ACGTAGAGGGGGACCCGACCGATACCCGACTTGTGCATCCCAACCCTCTGGCTGACTGAGCGCCC
778 ACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCTGGCTGAGCACCC
*
13130642 GCAC-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
13130694 GCATATGGAGTTCAGTCCTAGTCTAAGATGGGACCGATCGAGGGTTGCGGCAGCATATGCTAGGC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGAACGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * ** * * *
13130759 ACGGGCATGTGCCGGTGCCGCATTTTTCTTCACCAGGGCACCATTGCCGAAGCATAGCCGGAGAA
65 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * *
13130824 CCTGATCGACGGCATTGGGATTCCGGCGATCGGGGGGGCCGGGGGG-GTGCGCACATGATGTGGG
130 CCTGATCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
13130888 ATTGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCGCAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
13130953 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAATTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
13131018 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
13131083 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAAT
* * * * *
13131148 TTTAAAAAATCCCGAACCGTAAAAAGATTAAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGC
453 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
13131213 CATGAAACTTCACTTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
13131278 GGCATGTAGAAATATGAAGATGTGCCTAAA
583 GGCATGCAGAAATATGAAGATGTGCCTAAA
13131308 AACTCCACAT
Statistics
Matches: 4491, Mismatches: 451, Indels: 250
0.86 0.09 0.05
Matches are distributed among these distances:
851 44 0.01
852 142 0.03
853 1 0.00
856 2 0.00
857 2 0.00
859 3 0.00
860 256 0.06
861 172 0.04
862 1 0.00
863 3 0.00
865 1 0.00
866 1 0.00
867 2 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 4 0.00
873 1 0.00
874 4 0.00
876 114 0.03
877 116 0.03
878 9 0.00
879 1 0.00
880 1 0.00
881 1 0.00
882 4 0.00
884 3 0.00
886 1 0.00
888 3 0.00
890 1 0.00
891 355 0.08
892 20 0.00
894 7 0.00
895 217 0.05
896 729 0.16
897 384 0.09
898 137 0.03
899 166 0.04
900 335 0.07
901 502 0.11
902 306 0.07
903 415 0.09
904 20 0.00
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGAACGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGAAC
CTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTT
AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACG
CAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCA
CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13130704 original size:26 final size:26
Alignment explanation
Indices: 13130668--13130720 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13130658 GTTGACTTAG
*
13130668 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
* *
13130694 GCATATGGAGTTCAGTCCTAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
13130720 G
1 G
13130721 ATGGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:13133373 original size:11 final size:11
Alignment explanation
Indices: 13133357--13133383 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
13133347 TTTGGGGCAC
13133357 CATCGCCGGAG
1 CATCGCCGGAG
13133368 CATCGCCGGAG
1 CATCGCCGGAG
13133379 CATCG
1 CATCG
13133384 GAGAACCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.37, G:0.33, T:0.11
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:13134002 original size:26 final size:26
Alignment explanation
Indices: 13133963--13134015 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13133953 GTTGACTTAG
13133963 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
13133989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
13134015 G
1 G
13134016 ATCCGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:13134667 original size:744 final size:732
Alignment explanation
Indices: 13133152--13134671 Score: 1916
Period size: 739 Copynumber: 2.0 Consensus size: 732
13133142 GGACTCGACA
* * *
13133152 GATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCATACTCGTTTCATGGGTT
1 GATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCGTTTCATGGGTT
* * * *
13133217 GACTTAGGAATACGGAGTTCTTTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
65 GACTTAGGAATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCG
* *
13133282 ACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
130 ACCAGACCGAGGGTTACGACAACACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
**** * * *
13133347 TTTGGGGCACCATCGCCGGAGCATCGCCGGAGCATCGGAGAACCTGATCGGTGGCATTGGGGTTC
195 ACCAGGGCACCATCGCCGGAGCAT-------GCATCGGAGAACCTGACCGGCGGCATTAGGGTTC
* * * *
13133412 CGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGCGCAATGGGTGCTGGTACTTGGCCCA
253 CGACAATCGAGGGGGCCGGGGGGGTGTGCACACATGATGCGCAATGGGTGCTGGTACTTGGCCCA
* *
13133477 TATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGAT
318 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTGAGAT
* *
13133542 TTTACAAGTTTGTTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAAATCATCA
383 TTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCATCA
* * *** *
13133607 CAAAATCTTGTACACTATGACTTTTTAGCTGAATTTTTTTGTGCATGTCAAGAAAAATACAAGGA
448 CAAAATCTTGTACACTATAACTTTTTAGCTGAATTTTTTTGAGCACACCAACAAAAATACAAGGA
13133672 TCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAA
513 TCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAA
*
13133737 AAGTTTTAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
578 AAGTTTAAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
13133802 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
643 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATAAAGATGT
13133867 GCCTAAACCCACCTACCACCCTACC
708 GCCTAAACCCACCTACCACCCTACC
* * * * * * *
13133892 GATCCCAGGCTTGCGTAACCCACCCCTCTGGCCGGTTGAGC-GCCGCACGCTCGTTTCGTGGGTT
1 GATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCGTTTCATGGGTT
*
13133956 GACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCG
65 GACTTAGGAATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCG
* * * * *
13134021 ATCGGACCGAGGGTTGCGACAACACATGCTAGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTC
130 ACCAGACCGAGGGTTACGACAACACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
* *
13134086 ACCAGGGCACCATCGTCGGAGCAT-CATCGGAGAACCTGACCGGCGGCATTAGGGTTCCGTCAAT
195 ACCAGGGCACCATCGCCGGAGCATGCATCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACAAT
* ** * **
13134150 CGAGGGGGCCGGGGGGGCTGGTGCACACCTGATGCTGTGATGGGTGCTGGTACTTGGTGCTTTAT
260 CGAGGGGGCCGGGGGGG-T-GTGCACACATGATGC-GCAATGGGTGCTGGTACTTGG-CCCATAT
* *
13134215 ATTGGCCCCACTATCTCTCCATCAAGACCTCAAGAACTCACACTCCCTAGCAAAGAGCATTTGAG
321 ATTGGCCCC-CTATCCCT-CATCAA-ACCTCAAGAACTCACACCCCCT--CAAAGAGCATTTGAG
* * * *
13134280 ATTTTACAGGTTTGCTGCCAGTAAGCCCAGTTAAAAGTGTCTGAACTTGGGACACTTTTTTTGAA
381 ATTTTACAAGTTTGCTGCCAGT-AG-CCA-TT-AAAGTGTCTGAAATGGGGACAC-TTTTTTCAA
** *
13134345 ATGGTCACAAAATCTTGTACACT-TCAAGTTTTTA-CTGAATTTTTTTTGCGAGCACACCAACAA
441 ATCATCACAAAATCTTGTACACTAT-AACTTTTTAGCTGAA-TTTTTTT--GAGCACACCAACAA
* * *
13134408 AATTACAAGGATC-CAGTCTACCATA-TTTGGGTCAAAAC-CCTTCTGAATAAAATTTTTAAAAA
502 AAATACAAGGATCAC-GTCTACCA-AGTTTGGGCCAAAACTCCTTCCGAA-AAAA-TTTTAAAAA
* *** * *
13134470 AT-CCGATTTG-AAAAAGTTTAAGAAAATC-TGAAAAATAGAAAACGA-TTGTCTTGCCATG-AA
563 ATCCCAAACCGCAAAAAGTTTAA-AAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
* *
13134530 CTTCATGTGAAGGCTTAAGGGATCATTGTATGAATTTACATAG-CATAAAAATGGCAATTGGCAC
627 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGC-ATTGGCAC
* **
13134594 GTAG-AATATAAAGATGTGCCTAAACCCACCTACCACCCTATT
690 ATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTACC
* * *
13134636 GATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGC
1 GATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGC
13134672 ATAGTGCCCG
Statistics
Matches: 670, Mismatches: 83, Indels: 50
0.83 0.10 0.06
Matches are distributed among these distances:
731 50 0.07
732 1 0.00
733 13 0.02
734 19 0.03
735 13 0.02
736 7 0.01
737 5 0.01
738 20 0.03
739 157 0.23
740 68 0.10
741 2 0.00
742 3 0.00
743 2 0.00
744 139 0.21
745 69 0.10
746 35 0.05
747 55 0.08
748 12 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (732 bp):
GATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCGTTTCATGGGTTG
ACTTAGGAATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGA
CCAGACCGAGGGTTACGACAACACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCA
CCAGGGCACCATCGCCGGAGCATGCATCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACAATC
GAGGGGGCCGGGGGGGTGTGCACACATGATGCGCAATGGGTGCTGGTACTTGGCCCATATATTGG
CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAAG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCATCACAAAATCT
TGTACACTATAACTTTTTAGCTGAATTTTTTTGAGCACACCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTAA
AAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATAAAGATGTGCCTAAAC
CCACCTACCACCCTACC
Found at i:13134915 original size:26 final size:26
Alignment explanation
Indices: 13134886--13134955 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
13134876 TAGGCATATG
13134886 GAGTTCATTCCCAGTCTAAGCATACA
1 GAGTTCATTCCCAGTCTAAGCATACA
13134912 GAGTTCATTCCCAGTCTAAGCATACA
1 GAGTTCATTCCCAGTCTAAGCATACA
13134938 GAGTTCATTCCCAGTCTA
1 GAGTTCATTCCCAGTCTA
13134956 CAATTGGACT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCATACA
Found at i:13135733 original size:921 final size:918
Alignment explanation
Indices: 13133963--13136190 Score: 2629
Period size: 921 Copynumber: 2.4 Consensus size: 918
13133953 GTTGACTTAG
* *
13133963 GCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA-AGATCCGATCGGA
1 GCATACAGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTACA-AT----T-GGA
* * * * *
13134027 CCGAGGGTTGCGACAACACATGCTAGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCAG
59 -CGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTACCGCATTTTTCTTCGTCGA-
* * * *
13134091 GGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTAGGGTTCCGTCAATCGAGGG
122 GGCACCATCGTCGGAGCATCATCGAAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGAGGG
* * * *
13134156 GGCCGGGGGGGCTGGTGCACACCTGATGCTGTGATGGGTGCTGGTACTTGGTGCTTTATATTGGC
187 GGCC-GGGGGG-T-GTGCGCACATGATG-TGTGATGGGTGCTGGTACTTGG-CCCTTATATTGGC
* * **
13134221 CCCACTATCTCTCCATCAAGACCTCAAGAACTCACACTCCCTAGCAAAGAGCATTTGAGATTTTA
247 CCC-CTATCCCT-CATCAA-ACCTCGAGAACTCACAC-CCC-ATTAAAGAGCATTTGAGATTTTA
* *
13134286 CAGGTTTGCTGCCAGTAAGCCCAGTTAAAAGTGTCTGAACTTGGGACACTTTTTTTGAAATGGTC
307 CAGGTTTGCTGCCAG-AAG-CCA-TT-AAAGTGTCTGAA-ATGGGACAC-TTTTTTCAAATGGTC
*
13134351 ACAAAATCTTGTACACTTCAAGTTTTTACTGAATTTTTTTTGCGAGCACACCAACAAAATTACAA
366 ACAAAATCTTGTACACTTCAAGTTTTTACTGAATTTTTTTT-CGAGCACACCAACAAAAATACAA
* * ** **
13134416 GGATCCAGTCTACCATATTTGGGTCAAAACCCTTCTGAATAAAATTTTTAAAAAATCCGATTTGA
430 GGATCCAGTCTACCATATTTGGGGCAAAACCCTTCTCAATAAAATTTAAAAAAAATCCGACATGA
* *
13134481 AAAAGTTTAAGAAAATCTGAAAAATAGAAAACGATTGTCTTGCCATGAACTTCATGTGAAGGCTT
495 AAAAGTTTAAGAAAATCTGAAAAATAGAAAACGATCGTCTTGCCATGAACTTCACGTGAAGGCTT
* * *
13134546 AAGGGATCATTGTATGAATTTACATAGCATAAAAATGGCAATTGGCACGTAGAATATAAAGATGT
560 AAGGGACCATTGTATGAATTTACATAGCACAAAAATGGCAATTGGCACGCAGAATATAAAGATGT
* * * *
13134611 GCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCATAG
625 GCCAAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAG
* *
13134676 TGCCCGCCCGCCCGCCCACCCGCTTGTTTCGTCGGTCGGCTTAGGCATACAGAGTTCATTCCCAG
690 TGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTAGGTCGGCTTAGGCATACAGAGTTCATTCCCAG
* **
13134741 TCTAAGATCAAACCAGACCAAGGGTTGCGGCAATAGGATCAGCACCACGCAGAGGGAGACCCGGC
755 TCTAAGATCAAACCAGACCAAGGGTTGCGGCAATAGCATCAGCACCACGCAGAGGGAGACCCAAC
* * *
13134806 CGATCCCTGGCTTGTGCAT-CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGAG
820 CGATCCCTGACTTGCGCATCCCT-CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGAG
**
13134870 TTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
884 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
13134905 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTACAATTGGACTGAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTACAATTGGAC-GAGG
* * *
13134970 GTTGCGGCAGCACATGTTGGGCTTGGCCATGTGCTGGTACCGCATTTTTCTTCGTCGAGGCACCA
64 GTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTACCGCATTTTTCTTCGTCGAGGCACCA
* * * *** * *
13135035 TGGCCGGAGCATCATCGAAAAACCTTTTCGACAGCATTGGGGTTCCGGCAATCG-GGGGGCCGGG
129 TCGTCGGAGCATCATCGAAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGAGGGGGCCGGG
* * *
13135099 GGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTC
194 GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * * * *
13135164 ATCAAACCTTGAGAACTCACACCCCATTAAAGAGCATTTCAGATCTTACAAGCTTGCTGCCAGCA
259 ATCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAA
* *
13135229 GCTATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
324 GCCATTAAAGTGTCTGAAATG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
* **
13135294 TTTTTAGCTGAA-TTTTTTT-GTGCATGCCAACAAAAATACAAGGAT-CATGTCTACCA-AGTTT
388 TTTTTA-CTGAATTTTTTTTCGAGCACACCAACAAAAATACAAGGATCCA-GTCTACCATA-TTT
* *
13135355 GGGGCAAAAATCCTTC-CAA-AAAATTTAAAAAAAATCTCGAACCAT-AAAAAGTTTTA-AAAAT
450 GGGGC-AAAACCCTTCTCAATAAAATTTAAAAAAAATC-CG-A-CATGAAAAAGTTTAAGAAAAT
13135416 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
511 C-TGAAAAATAGAAAACGA-TCGTCTTGCCATG-AACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
13135481 ATGAATTTACA-GGCCACAAAAATGGC-ATTGGCATGCAGAAATATTAAGATGTGCCAAAACCCA
573 ATGAATTTACATAG-CACAAAAATGGCAATTGGCACGCAG-AATATAAAGATGTGCCAAAACCCA
* * *
13135544 CCTACCACCCTATCGATCCACGATTTGCGCATCCCGTC-CTCTGGTCGGCATAGTGCCCGCCTGC
636 CCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGC
* * * * * * **
13135608 CCGCCCGCCTGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTTCTAGTCTAAGATCTG
701 CCGCCCACCCGCTCGTTTCGTAGGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAA
* * * ** * * * * * * *
13135673 ATCGGATCGGGGGTTGCGGTAGTAGCATC-GATAGCACGTAGAGGGGGACCCAATCGATCCCTGA
766 ACCAGACCAAGGGTTGCGGCAATAGCATCAG-CACCACGCAGAGGGAGACCCAACCGATCCCTGA
* * *
13135737 CTTGCGCATCCCTCCCCTCTGGCCGACTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGC
830 CTTGCGCATCCCTCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGC
13135802 ATACAGAGTTCATTCCCAGTCTAA
895 ATACAGAGTTCATTCCCAGTCTAA
* * *
13135826 GCATATAGAGATCATTCCCAGTCTAAG-AT-CGA----A-T--CAG---AC-------CGAGGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTACAATTGGACGAGGGT
* * * *
13135872 TGCGACAGCACATGCTGGGCTCGGGCAGGTGCTGGTGTCCGCATTTTTCTTCGTCGGGGCACCAT
66 TGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGT-ACCGCATTTTTCTTCGTCGAGGCACCAT
* * * * * * ** * *
13135937 CGTCAGAGCATC-GCCAGAGAACCTGACCAATGGCATTGGGGTTTCGATGATCCGAGGGGTCGGG
130 CGTCGGAGCATCATCGA-AGAACCTGACCGACGGCATTGGGGTTCCGACAAT-CGAGGGGGC-CG
13136001 TGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
192 -GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
13136066 CTCATCAAACCTCGAGAACTCACACGCCATTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
256 CTCATCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
13136131 GTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATCGTCACAAAATCCTGTAC
321 GAAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
13136191 CCGACTGATC
Statistics
Matches: 1115, Mismatches: 146, Indels: 87
0.83 0.11 0.06
Matches are distributed among these distances:
900 38 0.03
901 59 0.05
902 2 0.00
903 5 0.00
904 1 0.00
905 172 0.15
906 1 0.00
908 2 0.00
911 3 0.00
913 1 0.00
914 1 0.00
918 20 0.02
919 48 0.04
920 40 0.04
921 302 0.27
922 133 0.12
923 2 0.00
924 2 0.00
925 2 0.00
926 32 0.03
927 3 0.00
928 15 0.01
929 6 0.01
930 7 0.01
931 14 0.01
932 20 0.02
933 11 0.01
934 1 0.00
935 6 0.01
936 8 0.01
937 104 0.09
938 3 0.00
942 50 0.04
943 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (918 bp):
GCATACAGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTACAATTGGACGAGGGT
TGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTACCGCATTTTTCTTCGTCGAGGCACCATC
GTCGGAGCATCATCGAAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGAGGGGGCCGGGGG
GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGC
CATTAAAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
TTACTGAATTTTTTTTCGAGCACACCAACAAAAATACAAGGATCCAGTCTACCATATTTGGGGCA
AAACCCTTCTCAATAAAATTTAAAAAAAATCCGACATGAAAAAGTTTAAGAAAATCTGAAAAATA
GAAAACGATCGTCTTGCCATGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATA
GCACAAAAATGGCAATTGGCACGCAGAATATAAAGATGTGCCAAAACCCACCTACCACCCTATCG
ATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCACCCGCTCG
TTTCGTAGGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTT
GCGGCAATAGCATCAGCACCACGCAGAGGGAGACCCAACCGATCCCTGACTTGCGCATCCCTCCC
CTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCC
CAGTCTAA
Found at i:13135840 original size:26 final size:26
Alignment explanation
Indices: 13135800--13135852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13135790 GTTGACTTAG
*
13135800 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
*
13135826 GCATATAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
13135852 G
1 G
13135853 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:13138999 original size:26 final size:26
Alignment explanation
Indices: 13138963--13139015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13138953 GTTGACTTAG
*
13138963 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
13138989 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13139015 G
1 G
13139016 ATCGGCCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13140122 original size:888 final size:890
Alignment explanation
Indices: 13136189--13140292 Score: 5251
Period size: 901 Copynumber: 4.6 Consensus size: 890
13136179 AAAATCCTGT
* * * * **
13136189 ACCCGACTGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCCACTGAGCACCCGCACGCTCGTTT
1 ACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
* *
13136254 CGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCT
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* ** *
13136319 AAGAT-AGGACCAGATTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
131 AAGATCA-GACCGGACCGAGGGTTGCGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCA
* *
13136383 TTTTTCTTCGTCGGGGCACCATCGTTGGAGCAGCACCGGAGAACCTGACCGGTGGC-TTTGGGTT
194 TTTTTCTTCGTCGGGGCACCA----T----C-G--CCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * * *
13136447 CCGACGATCAGGGGGGTCGGGGGGTGTGCGCAAATGATGTGCGACGGGTGCGGGTACTTGGCCCT
248 CTGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* **
13136512 TATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACA-CCCCAAAAAGAGCATTTGAGAT
312 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
13136576 TTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
377 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
13136641 CAAAATCTTATACACTTCGAGTTTTTATCTGAATTTCTTTGTGCATGCCAAC-AAAAATTCAAGG
442 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAAT-AAGG
* * ** *
13136705 ATCACGTCGACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAAA-TTTAAAAAATCTCAAACCGT
506 ATCACGTCTACCAAGTTTGGGGCCAAAAATCC-TTCCAAAAAAATTTTAAAAAATCCCAAACCGT
* * * * *
13136769 AAAAAGGTTTGAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTAAAGG
570 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * ** *
13136834 CTTAAGGGAGCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACACAGAAATATTAAGA
635 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * *
13136899 TGTGCCAAAACCCACCTACCAACCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGTCGGCA
700 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACG
* * * * * *
13136964 TAGTGCCCGCCTGCCCGCCGGCCTGCTCGTTTCGTAGGTTGGCTTAGGCATACGAAGTTCATTTC
765 TAGTGCCCGCCCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * *
13137029 TAGTCTAAGATCTGACT-GGATCG-GGGTTGCTGTAGTAGGATCGGTAGCACGCAGAGGGGG
830 CAGTCTAAGAT-TGAATCGGATCGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGGG
* * *
13137089 ACCCGACCGAT-CCTCGGCTTCCGCATCCCGCCCCTCTGGCCGACTGAGCCCCCGCACGCTCGTT
1 ACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
* * * *
13137153 TCGTGGGTTGACTTAGGTAAACGGAGTTCATTTCCAGTCTAAGCATATGGAGTTCATTCCCAGTC
65 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* *
13137218 TAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATTAG-GGGCTCGGGCATGTGCTGGTGCCGC
130 TAAGATCAGACCGGACCGAGGGTTGCGGCAGCACA-T-GCTGGCTCGGGCATGTGCTGGTGCCGC
* *
13137282 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTGTGGT
193 ATTTTTCTTCGTCGGGG---CA----C----CATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* * *
13137347 TCTGGA-GATCGGGGGGCCGGGGGGGTGTGCGGACATGATGTGTGATGGGTGCTGGGACTTGGCC
247 TCT-GACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
13137411 CTTATATCGGCCCCCTGTCCCTCATCAAAGCTTTAGAACTCACACCCCCTTAAAGAGCATTTGAG
310 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
13137476 ATTTTATAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGT
375 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
13137541 CACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTCTGTGTGCATGCC-A-AAAAAAATACA
440 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAATA-A
* * * *
13137604 AGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTAAACCG
504 GGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCG
* * * * *
13137669 TAAAAAGTTTCAAAAATTGTGAAAGATAGAAAACGAGTCGTCTTGCCATGAATCCTCACGTGAAG
569 TAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
13137734 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
634 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
*
13137799 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
699 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGAC
* * * * * * * *
13137864 GTAATGCTCGCCTGTCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGACTTCATTC
764 GTAGTGCCCGCCCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * ** * *
13137929 CTCA-TCTAGGATT-AGATCAGACCGAGGGTTACAGCAAG-AGGATTGGCAGCACGTAGAGGGGG
829 C-CAGTCTAAGATTGA-ATCGGATCGAGGGTTAC-GGTAGTAGGATCGGCAGCACGCAGAGGGGG
** * * * * *
13137991 ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCCGCTGAGCGCCCGCACGCTCATTT
1 ACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
* * ** * *
13138056 CGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCCAAGCATACAAAGTTCCTTCCCAGTCC
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
** * *
13138121 AAGATTGGATCGGAACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCA
131 AAGATCAGACCGG-ACCGAGGGTTGCGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCA
*
13138186 TTTTCCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTT
194 TTTTTCTTCGTCGGGGCACCAT---C---G-----CCGGAGAACCTGACCGGCGGCATTGGGGTT
* ** *
13138251 CTAACGATC-----G--GGGGGGTGTGAACACATGATGTGCGATGGGTGCTGGTACTTGACCCTT
248 CTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
13138309 ATATTGGCCCCCTGTCCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
313 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
13138374 TTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCT-AAAGTGGGGACACTTTTTTTAAATGGTCA
378 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCA
* * * *
13138438 CAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
442 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAATAAGGA
* *
13138503 TCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTA
507 TCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTA
* * *
13138567 AAAAGTATTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCTCGTGAAGGC
571 AAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * **
13138632 TTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATACAAAGAT
636 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * ** *
13138697 GTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGTGCATCCTGTCTCTCTGGCCGACGT
701 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGT
* * *
13138762 AGAGCCCGCCCGCCCACTCG-CT--T-GTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCC
766 AGTGCCCGCCCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * *
13138823 AGTTTAAGATTGGA-CCGATCTGAGGGTTCCGGCAGTAGGATCGACAGCACGCAGAGGGGG
831 AGTCTAAGATTGAATCGGATC-GAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGGG
* ** * **
13138883 ACCCGACCGATCCCTGGCTTGCGCAACTTGCCCCTCTAGCCGGCTGAGTGCCCGCACGCTCGTTT
1 ACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
* *
13138948 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCT
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* ** * * * * * *
13139013 AAGATC-GGCCTAAACCGAGGGTTGCAGTAGCACATGCAGGGCTCGGGCATGTCCTGGTTTCCGT
131 AAGATCAGACC-GGACCGAGGGTTGCGGCAGCACATGC-TGGCTCGGGCATGTGCTGG-TGCCGC
* * * * * *
13139077 ATTTTTCTTCATCGAGGCACCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACAATCA
193 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATC-
* * * *
13139142 GGGGGGCCGGGGGGGTGTTCGCACATGATTTGTGATGGGTGCTGGTACTTGGCCCTTATAGTGG-
257 GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
13139206 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGT
321 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
13139271 TTGCTGCCAGTAGCCATTAAAGTGTCTG-AATGGAGAC-CTTTTTTTCAAATGGTCACAAAATCT
386 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCT
* * *
13139334 TGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAACAAAAAAATAAGGATCACGGCT
450 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAATAAGGATCACGTCT
*
13139399 GCCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAA-TTTT
515 ACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTT
* *
13139463 AAAAATCGTGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGAC
580 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
13139528 CATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
645 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
** * *
13139593 CCCACCTACCACCCTATCGATCCAC-GCTTGCACATCTTGTCTC-CTTGGTCAACGTAGTGCCCG
710 CCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTC-TGGCCGACGTAGTGCCCG
*
13139656 CCCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAG
774 CCCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
13139721 ATTGAATTGGATCGAAGGTTACGGTAGCAGGATCAGCAGCACGCA-ATGGGGG
839 ATTGAATCGGATCGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGA-GGGGG
* * * *
13139773 ACCCGGCCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGTACGCTTGTTT
1 ACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
* * * * *
13139838 GGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCTAGTGT
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* ** * * *
13139903 AAGATCAGATCGGATTGAGGGTTACGGTAGCACATGCTGGCTCGGACATGTGCTGGTGCCGCATT
131 AAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGCTCGGGCATGTGCTGGTGCCGCATT
* * *
13139968 TTTCTTCATC-GGGCTACCATCGCCGGAGAACCTGATCGGCGGCTTTGGGGTTCTGACGATCGGG
196 TTTCTTCGTCGGGGC-ACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATC-GG
*
13140032 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCC
259 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
**
13140097 CTATCCCTCATCAAACCTTGAGAACTCACACCCTTTTAAAGAGCATTTGAGATTTTACAGGTTTG
324 CTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
13140162 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTA
389 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* ** * * *
13140227 CACTTCGAGTTTTTAGCTGAATTGTTTCATGCATGCCAACAAAAATACATGGATCACGTCTACCA
454 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAATAAGGATCACGTCTACCA
13140292 A
519 A
13140293 CCCGCACACT
Statistics
Matches: 2790, Mismatches: 336, Indels: 167
0.85 0.10 0.05
Matches are distributed among these distances:
881 34 0.01
885 1 0.00
886 41 0.01
887 206 0.07
888 296 0.11
889 200 0.07
890 267 0.10
891 55 0.02
892 216 0.08
893 1 0.00
894 3 0.00
895 203 0.07
896 257 0.09
897 7 0.00
898 2 0.00
899 3 0.00
900 225 0.08
901 390 0.14
902 277 0.10
903 102 0.04
907 2 0.00
911 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (890 bp):
ACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGCTCGGGCATGTGCTGGTGCCGCATT
TTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGG
GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAATAAGGATCACGTCTACCAAG
TTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAAT
CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
ACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAAT
CGGATCGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGGG
Found at i:13143705 original size:26 final size:26
Alignment explanation
Indices: 13143676--13143728 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13143666 CTGGTCCGAT
*
13143676 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13143702 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13143728 C
1 C
13143729 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13146074 original size:26 final size:26
Alignment explanation
Indices: 13146037--13146087 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13146027 GGTGACTTAG
* * *
13146037 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13146063 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
13146088 GGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13148076 original size:713 final size:709
Alignment explanation
Indices: 13146063--13148245 Score: 3144
Period size: 706 Copynumber: 3.1 Consensus size: 709
13146053 CCTAGTCTAA
* * * *
13146063 GCATACGAAGTTCATTCCCAGTCTAGGATCGGACCGGACCGAAGGTT-ATGGCAGCACATGCTGG
1 GCATACGAAGTTCAATCCCAGTCTAAGATCGGACCGGACCGAGGGTTGA-AGCAGCACATGCTGG
* **
13146127 GCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGCTAGGGCACCATTACCGGAGCATCACCGGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC-CCGGGGCACCA-TACC-GAGCATC-CCGGAG
* * * * *
13146192 AACCTGACCGGCGACGTTCGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
126 AACCTGACCGGCGGCATTGGGGTTCCGGCTATCGGGGGG-CGGGGGGTGTGCGCACATGATGTGC
* *
13146257 GATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCTTCATCAAACC-TCGAGAACTCAC
190 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGT-GAGAACTCAC
*
13146321 ACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAA
254 ACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
13146386 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
13146451 GTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTGCTTCCAAAAA
384 ATACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTGCTTCCAAAAA
*
13146516 AATTTT-AAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATCAAAAATAGAAAACGAGTCATCT
449 AATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
* *
13146580 TGCCTTAAAACTTCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCA
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
13146645 TTGGCAAACAGAAATAAGAAGATGTGCCTAAAACCACTTACCACCCTATCGATCCATGGCTTGCG
579 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * **
13146710 CATCCCGTCTCTCTGGCCAACGTAGTGCCTGCCCACCCACCTGTCCCTCATTTCGTCGGTTGGCT
644 CATCCCGTCTCTTTGGCCGGCGTAGTGCCTG-CCGCCCACC-CACCCTCATTTCGTCGGTTGGCT
13146775 TAG
707 TAG
* * * * * *
13146778 GCATACGGAGTTCAATCCTAGTCTATGATCAGG-CCAGACCGAGGGTTGCAGCAGCACATGTTGG
1 GCATACGAAGTTCAATCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGAAGCAGCACATGCTGG
* *
13146842 GGTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCAT--C--G--T--CGGAGAAC
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC-CCGGGGCACCATACCGAGCATCCCGGAGAAC
*
13146899 CT-AGCCGGCGGCATTGGGGTTCCGGCTATCGGGGCGACGGGGGGGTGTGCGCACATGATGTGCG
129 CTGA-CCGGCGGCATTGGGGTTCCGGCTATCGGGG-GGC-GGGGGGTGTGCGCACATGATGTGCG
* * *
13146963 ATGGGTGCTAGTACTTGGCGCTTATATTGGCCCCCTATCCCTCATCAAA-TGTTGAGAACTCACA
191 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCG-TGAGAACTCACA
*
13147027 CCCCCTTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
255 CCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
13147092 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTCTA
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* *
13147157 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTGCTTCCAAAAAA
385 TACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTGCTTCCAAAAAA
*
13147222 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
450 ATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
*
13147287 GCAATGAAACTTCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCAT
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
13147352 TGGAACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCATATCTATCCACGGCTTGCGC
580 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
13147417 ATCCTGTCTCTTTGGCCGGCGTAGTGCCTGCACGCCCACCCACCGCTCATTTCGTTGGTTGGGTT
645 ATCCCGTCTCTTTGGCCGGCGTAGTGCCTGC-CGCCCACCCACC-CTCATTTCGTCGGTTGGCTT
13147482 AG
708 AG
* * * *
13147484 GCATACGGAGTTCAATCCTAGTCTAAGATCGGACCGGATCGAGGGTTGAAGCAGCACATGCTAGG
1 GCATACGAAGTTCAATCCCAGTCTAAGATCGGACCGGACCGAGGGTTGAAGCAGCACATGCTGGG
*
13147549 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTC-CCGGGGCACCAT-ACC-GAGCATC-CCGGAGA
* *
13147614 ACCTGACCGGTGGCATTGGGGTTCCGGCTATCGGGGGGCTGGGGGTGTGCGCACATGATGTGCGA
127 ACCTGACCGGCGGCATTGGGGTTCCGGCTATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
* *
13147679 TGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCGTGAGAACTCAAACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGTGAGAACTCACACC
* *
13147744 CCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATGG
257 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
13147808 GGACACTTTTTTCAAATGGTCA-AAAATCTTGTACACTTTGAATTTTTAGCTGAATTTTTTTTTC
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATA
* * * *
13147872 CATGCCAACAAAAATACAAGGACCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTGCTTCCAAAAAAAT
* * ** *
13147937 TTTAAAAAATCTC-GAACCG-CAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTTG
452 TTTAAAAAATC-CAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
* * *
13148000 CCATGGAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGA-CATTGTATGAATTTACAAGCCATAAAAATGGCAT
13148065 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
580 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * *
13148130 ATCCCGTCT-TTCTGGTCGGCATAGTGCCTGGCCGCTCGCCCGGTCTCTCGTTTCATCGGTTGGC
645 ATCCCGTCTCTT-TGGCCGGCGTAGTGCCT-GCCGCCCACCC--ACCCTCATTTCGTCGGTTGGC
*
13148194 TGAG
706 TTAG
* *
13148198 GCATACGAAGTTCAATCCCAGTCTAAGATCAGATCGGACCGAGGGTTG
1 GCATACGAAGTTCAATCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
13148246 CGGCAGCAGC
Statistics
Matches: 1322, Mismatches: 116, Indels: 61
0.88 0.08 0.04
Matches are distributed among these distances:
703 1 0.00
704 36 0.03
705 281 0.21
706 325 0.25
707 1 0.00
709 2 0.00
712 70 0.05
713 238 0.18
714 145 0.11
715 178 0.13
716 5 0.00
717 39 0.03
718 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (709 bp):
GCATACGAAGTTCAATCCCAGTCTAAGATCGGACCGGACCGAGGGTTGAAGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCCCGGGGCACCATACCGAGCATCCCGGAGAACCT
GACCGGCGGCATTGGGGTTCCGGCTATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGTGAGAACTCACACCCCCT
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATACATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTGCTTCCAAAAAAATTTTA
AAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTTTGGCCGGCGTAGTGCCTGCCGCCCACCCACCCTCATTTCGTCGGTTGGCTTAG
Found at i:13148393 original size:26 final size:26
Alignment explanation
Indices: 13148357--13148407 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13148347 GTTCACTTAG
*
13148357 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13148383 GCATAGGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
13148408 TGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13149294 original size:26 final size:26
Alignment explanation
Indices: 13149258--13149307 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13149248 GACTTACGCA
*
13149258 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
13149284 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
13149308 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:13150193 original size:26 final size:26
Alignment explanation
Indices: 13150154--13150206 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13150144 GTTGACTCAG
13150154 GCATACGAAATTCATTCCCAGCCTAA
1 GCATACGAAATTCATTCCCAGCCTAA
* * * *
13150180 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAATTCATTCCCAGCCTAA
13150206 G
1 G
13150207 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGCCTAA
Found at i:13150290 original size:899 final size:898
Alignment explanation
Indices: 13147484--13151831 Score: 5951
Period size: 894 Copynumber: 4.9 Consensus size: 898
13147474 GTTGGGTTAG
* * * * *
13147484 GCATACGGAGTTCAATCCTAGTCTAAGATCGGACCGGATCGAGGGTTG-AAGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGA-CAGCACATGCTGG
* *
13147548 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCAGAGCATCGCCGGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACC-GAGCATCGTCGGAG
** * * *
13147613 AACCTGACCGGTGGCATTGGGGTTCCGGCTATC-GGGGGG-C-TGGGGGTGTGCGCACATGATGT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
13147675 GCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCGT-GAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTC
* * *
13147739 AAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
13147804 ATGGGGACACTTTTTTCAAATGGTCA-AAAATCTTGTACACTTTGAATTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
13147868 TTTCCATGCCAACAAAAATACAAGGACCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* * *
13147933 AAATTTTAAAAAATCTCGAACCGC-AAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
13147997 TTGCCATGGAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTACAAGCCCTAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
**
13148062 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
13148127 CGCATCCCGTCTTTCTGGTCGGCATAGTGCCTGGCCGCTCGCCCGGTCTCTCGTTTCATCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCGCCCGCCC-G---CTCATTTCATCGGTTG
* * * *
13148192 GCTGAGGCATACGAAGTTCAATCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGCA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGA
* * * * * * *
13148257 TCTGAAACACCCAAAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGTCGGCT
773 TCGGCAACACGCAAAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
** * * * *
13148322 GAGCACTGGCACGCTTGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCTAGTCTAA
838 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
* * * *
13148383 GCATAGGGAGTTCATTCCCAGTCTATGATCAGACCGGA-CTGAGGGTTACGACAGCACATCCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGACAGCACATGCTGG
* *
13148447 GCTCGGGCATGTTTTGGAGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACC-GAGCATCGTCGGAG
* * * * * ** *
13148512 AACCTGACCGGCAGTATTGGGTTTCCGGCGATCGGGGGGGCCGAGGGGGGGTGTGCGTGCATGAC
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGGTGTGCGCACATGAT
* * * *
13148577 GTGCAATGGGTGCTGGAACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
13148642 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTTTAA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
13148707 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG-GATTTTTAGCTGAATTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTT
* * * *
13148771 TTTGTGCATGCCAACAAGAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAAGTCC-TCCTG
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-A
* * *
13148835 AAAAAATTTTAAAAAATCCCGAACTGCAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTC
450 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
13148900 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
13148965 TGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATTGATCCACAGC
580 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
13149030 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---GCCCGCCCGCCCGTTCGTTTCATCAGCTGGC
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGC
* *
13149092 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA-CTGGACCGAGGGTTGCAGCAGCAGGAT
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCAGGAT
* * * * *
13149156 CGACAACACACAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGACTG
774 CGGCAACACGCAAAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * *
13149221 AGCACCCGCACGCTCGTTTCGTGAGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
839 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
* * *
13149281 GCGTACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
* * * ** * * *
13149346 CTCGAGCTTGTGTTGGTGTCATATTTTTCTTTGCCAGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACC-GAGCATCGTCGGAGA
* * * *
13149411 ACCTAACCGACGGCATTGAGGTTCCGACGAT-TGGGGGGCC-GGGGGGTGTGCGCATATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
**
13149474 CGATGGGTTATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
13149539 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
13149604 GGGAACACTTTTTTCAAATGGCCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTATG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * *
13149669 TGCGTTACACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATGCTTTCCAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCAAAAA
* *
13149734 AATTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
13149799 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGT
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
13149864 ATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
13149929 ACATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTA
** * * * *
13149994 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCAAGGGTTGCGGTAGTAGGATCGGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * ** * *
13150059 AGCCCGCAGAGGGGGACTTGGTCGATCCTCGGCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCA
778 AACACGCAAAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCA
* * *
13150124 CCCGCACGCTCGTTTCGTGGGTTGACTCAGGCATACGAAATTCATTCCCAGCCTAA
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
* * *
13150180 GCATACGGAGTTCATTTCCAGTCTAAGATCAAACCGGATCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
*
13150245 CTCGGGCATGTGTTGGTGCCGCATGTTTCTTCGTCGGGG------CA-C---CATCGTCGGAGAA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAGCATCGTCGGAGAA
*
13150300 CCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCAAGGGGGGGTGTGCGCACATGATGT
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGGTGTGCGCACATGATGT
*
13150365 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
13150430 CACCCCCTTAAAGAGCATTCGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13150495 T-GGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 TGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * **
13150559 TGTGCATGCCAAGAAAAATACAGGGATCACGTCTAGCAAGTTTGGGGCCAAAACTTTTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* *
13150624 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACAAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
13150689 TTG-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
13150753 TATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
13150818 CGCATTCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCACCCACCCACTCACTCGTTTCGA-CGGTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCTCA----TTTC-ATCGGTT
* * * * ** *
13150882 TGCTTAGGCATACGTAGTTCATTCCCAG-CATAAGATCAGACCAGACAAAGGGTTGTGGCAGCAG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTC-TAAGATCAGATCGGACCGAGGGTTGCGGCAGCAG
* * * * * * * * *
13150946 GATCGGCAGCATGTAAAGTGGGACCCAGCCGATCCTCGGCTTG-GGAACCCGCCCCTCTAGCCGA
771 GATCGGCAACACGCAAAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * * *
13151010 CTGAGCACCTGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGCCTAA
836 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
* * * * * *
13151073 GCATACGGAGTTCATTCCCAGTCTCAGATCGGACCGGACCAAGGGTTGCGGCAGGAACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACA-GCACATGCTGG
* * * * *
13151138 GCTTGGGGATGTGTTGGTGTCGCATGTTTCTTCGTTGGGGCACCAT---C--G---C--CGGAGA
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAGCATCGTCGGAGA
* *
13151193 ACCTGACTGACGGCATTGGGGTTCCGAAGATCGGGGGGGCCGAGGGGGGGTGTGCGCACATGATG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGGTGTGCGCACATGATG
* *
13151258 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATAAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13151323 ACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
13151388 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
13151453 TGTGCGTGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* * * *
13151518 AAGTTTTAACAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
13151583 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
13151648 CATTGGCACACAGAAGTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
13151713 CGCATCCCGTCTCTCTGGCCAGTGTAGT---GCCTGCCCGCCCGCTC-TTTCCGTCGGTTGGCTC
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCTCATTT-CATCGGTTGGCTT
* * * *
13151774 AGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGTGGCAGCA
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCA
13151832 CATACTGGGC
Statistics
Matches: 3074, Mismatches: 329, Indels: 104
0.88 0.09 0.03
Matches are distributed among these distances:
886 3 0.00
887 57 0.02
888 41 0.01
889 8 0.00
890 164 0.05
891 91 0.03
892 244 0.08
893 123 0.04
894 748 0.24
895 369 0.12
896 4 0.00
897 9 0.00
898 317 0.10
899 417 0.14
900 8 0.00
901 2 0.00
902 10 0.00
903 1 0.00
904 164 0.05
905 112 0.04
906 182 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAAC
ACGCAAAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
Found at i:13154893 original size:904 final size:900
Alignment explanation
Indices: 13151776--13163679 Score: 11822
Period size: 901 Copynumber: 13.5 Consensus size: 900
13151766 GTTGGCTCAG
** * * *
13151776 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGTGGCAGCACATACTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
13151841 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGAGACACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TGGGGCACCATCGTCGGAGCATCGTCAGAGA
* * * * * * *
13151906 ACGTGACCGGCGGCATTGGGGTTCCAATGATC-GGGGGGCCGAGGAGTGGTGTGCACACAAGATG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GG-GGGGTGTGCGCACATGATG
* * * *
13151970 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATTCCTCATCAAACCTCGTGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13152035 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTGTGCTACCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13152100 ATGGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
13152165 TTTGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTCGG-GGGCAAAACTTCTTCCAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGTG-AAAACTCCTTCCGAA
* * * *
13152229 AAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
13152294 CTTGCCATGAAACTTCATGTGAGGGCTTAGGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * * *
13152359 GCATTGGCATGCAGAAATATGAAGATCTACCTAAACCAACCTACCACCTTATCGATCCGCGACTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
13152424 GCGCATCCCGTCTCTCTTGTCGGCGTAGTACTAGCCCGCCCGTCCGCCCACCCGCCCGCCCGCTC
647 GCGCATCCCGTCTCTC-TGGCGGCGTAG---T-G-CC-CAC--CCG----CCCGCTCGCCCGCTC
* * * * ** *
13152489 GTGTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCACAATCTAAGATTGGACCGGACCAAGGGT
699 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
* ** ** *
13152554 TG-GAGTAGTAGGATCAACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCGC
764 TGCGA-TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * *
13152618 CCCTCTGGCCGGCTGAGCACCCGCACGATCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCA-T
828 CCCTCTGGCCGGCTGAGCGCCCG--CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
*
13152682 TCGCAATCTAA
891 TC-CAGTCTAA
** * * * *
13152693 GCATATGGAGTTCATTCCCATTCTCAGATCGGACC-AGACCGAGGGTTACGGCAGCACATGCTAG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
13152757 GCTCAGGCTTGTGCTAGTGCTGCATTTTTCTTCATCAGGGCACCA---TC---G--TCG---GAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGTCGGAGCATCGTCAGAG
* * * * *
13152811 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGAGGGCTTGAAGAGGGGTGTGCGCACATGG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CG--GGGGGGTGTGCGCACATGA
* * * * *
13152875 TCTGCGATGGATGCTGGTACTTAGCCCTTATATTGGCCCCCGATCCCTCATAAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
13152940 TCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCACTAAAGTGTTTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
13153005 AATTGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATGT
321 AAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
13153070 TTTTGTGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAATTT--CATGCCAAAACTCCTTC
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGTG--AAAACTCCTTC
* * ** *
13153133 CGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
448 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
13153198 TTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATCAA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * *
13153263 ATTGGCATTGGCACGCAGAAATATGATGATGTGCCTAGACCCACCTATCACCCTATCAATCCACG
578 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
13153328 GCTTGCGCATCCTGTCTCTCTGGCCGGTGTCGTGCCCACCCGCCTGACT-GCCCGCTCGTTCCGT
643 GCTTGCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCACCCGCCCG-CTCGCCCGCTCGTTTCGT
* * *
13153392 CGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTA
706 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATA
* * *
13153457 GCAGGAACGGCAGCACGCAGAGTGGGACCCGATCGATCCCCGGCTTATGC-CATCCTGCCCCTCT
771 GCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC-T-TGCGCATCCCGCCCCTCT
* ** * * *
13153521 GGCCGGCTGAGCACTTGTTTGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAG-
834 GGCCGGCTGAGCGCCCG--CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGT
13153585 -T--
897 CTAA
* *
13153586 -C-T--A-AG---------A-T-T---A---GACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
13153629 TTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGTCGGAGCATCGTCAGAGA
* * *
13153694 ATCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGTGCC-GGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
13153758 CAATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCACTCATCAAAACTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
13153823 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13153888 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
13153953 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCATGAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGTGAAAACTCCTTCCGAAAAA
* *
13154018 ATTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
13154083 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
13154148 TTGGCACACAGAAATATGAACAAGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCA
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
13154213 CATCCCGTCTCTCTGGCGGACGTAGTGCCCACCCGCCCGCTCGCCCACTAGTTTCATCGGTTGGA
650 CATCCCGTCTCTCTGGCGG-CGTAGTGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
13154278 TTAGGCATACGGAGTTCATTCTCAGCCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATC
* *
13154343 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGA
779 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
13154408 GCGCCTACGCGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTTATTTCCAGTCTAA
844 GCGCC--CGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
* * * *
13154467 GCTTCCAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCACCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
13154532 CTCAGGCATGTGCTGGTGCCACATTTTGCTTCACTGAGGCTCCATCGTTGGAGGATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTGGGGCACCATCGTCGGAGCATCGTCAGAGA
* * * * *
13154597 ACCTGATCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTATGCTCACATGATGTA
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
13154662 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAGCCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
13154727 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13154792 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGGC-AAATTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTTTT
* * ** * *
13154856 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTGCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGTGAAAACTCCTTCCGAAAA
* ** * *
13154921 AATTTTTAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
13154986 TGCCATGAAACTTCACGTGAAGGCTTAAGGGA-CATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
13155050 TTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
13155115 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCTGCCCGCCCGCCCGCTTGTTTCGTCAGTTGG
649 GCATCCCGTCTCTCTGG-CGGCGTAGTGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGG
* * *
13155180 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGCGACAGTAGGA
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGATAGCAGGA
* * ** * * * *
13155244 TCGGCAGCACACAGAGGGGGACCTGGCCTATCCCCGGCTTGCGCATCCCGCCCCTCTTGTCGGTT
777 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
13155309 GAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
842 GAGCGCCCG--CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
* *
13155366 -C-T--A-AG---ATT-CCA-TC-----T-------AACCGAGGGTTACGGCAGCACATGCTGGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
13155409 CTCGGGAATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCG-CAGGAGCATCGTTAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGTC-GGAGCATCGTCAGAG
* * *
13155473 AACCTGACCCG-CGGTATTGGGGTTCCGACGATCGGGGGGGCC-GAGGGGTGTGCGCACTTGATG
129 AACCTGA-CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
13155536 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * *
13155601 ACACCCCCTTAAAGAGCATTTGAGATTTTGTAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
13155666 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * * * *** *
13155731 TACGCATGCCAAAAAAAATAAAAGGATCACGTGTACTTTGTTTGG-GTCGAAAACT-CTTCCGAG
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGT-GAAAACTCCTTCCGAA
* * * * * *
13155794 AAAATTGTAAAAAATCCCAAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCAT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
13155859 CGTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
13155924 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *** * *
13155989 CCGTATCCTGTCACTCTGGCCGACGTAGTGCTCGGTCGCCCGCTCGCCCTCTCGCTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTT
* * * * * ** * *
13156054 GGCTTAGGCATACGAAGTTCTTTGCCAGTCTATGGTTGGATCGGACAGAGGGTTGCAGCA-A-CA
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-G-ATAGCA
* *
13156117 GGATCAGCAGCACGTC-GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
774 GGATCGGCAGCACG-CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * ** *
13156181 GGCTGAGCGCCCGAACGCTTGTTTCATGGGTTGACTTAGGTGTACGGAGTTCATTCCCAGTCTAA
838 GGCTGAGCGCCCG--CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
* * *
13156246 GCATGCGGAGTTCATTCCCTA-TCTAAGATCGGACC-AGACCGAGGGTTGCGGCAGCACATGTTG
1 GCATACAGAGTTCATTCCC-AGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTG
**
13156309 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA---TC---G--TCG---GA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTGGGGCACCATCGTCGGAGCATCGTCAGA
* * * *
13156363 GAACCTGACCGACGGCATTGGGGTTCCGATGATCGAGGGGGCCGGGGGTGTTGTGCACACATGAT
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGAT
** ** * *
13156428 GTGCGATGGGTTTTGAAATTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
13156493 CACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
13156558 AATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * ** *
13156623 TTGTGCATGCCAA-AAAAATACAAGGGTCAGGTCTACCAAGTTTGG-GCCAAAACTCCTTCTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGTGAAAACTCCTTCCGAA
* ** ** ** * *
13156686 AAAATTTAAAAAAATCCTAAACCATAAAAAGTTTCAAAAATTGTAAAAAATAAAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * * *
13156751 CTTGCCATTAATCTTCACGTGAAGGCTTAAGAGACCGTTGTATGAATTTGCAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
13156816 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCAATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
13156881 GTGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCG--C-C-CGCCCGCTCGTTTCATTGGTT
647 GCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTT
* * * *
13156938 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGA-CCGAACCTGACTGAGGGTTGCGATAGCAG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGATAGCAG
* ** * * * *
13157002 GATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCGTGCGTATCCCACCCCTCTGGCCGA
775 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
13157067 CTGAGCGCCCGTACGGTCGTTCCGTGGGTTGACTGAGGCATACGGAGTTCTTTTCCAGTCTAA
840 CTGAGCGCCCG--CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
* * * * * *
13157130 GCATACAGAGTTCTTTCCCTA-TCTAAGATTGGACCGAAACGAGGGTCGTGGTAGCACA-GTCTG
1 GCATACAGAGTTCATTCCC-AGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATG-CTG
* *
13157193 GGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAAA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGTCGGAGCATCGTCAGA
** * * * *
13157258 GAACCTGACCGGTGGCATTAGGGTTCCGAAGATCGGGGGGGCTGGGGGGGTGTGCGCACTTGATG
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
13157323 TGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
13157388 ACCCCCCCTTAACGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** *
13157453 ACAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** * *
13157518 TGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCTAAGTTTGGGGCCACAACTCCTTCCAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AAGTTTGGCGTGAAAACTCCTTCCGAA
* * * *
13157583 AAAATTTAAAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACCAGTCG
452 AAAATTT-TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
13157648 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * ** * *
13157713 GGCAATGGCTCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACAGCT
581 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * *
13157778 TGCGCATCCAGTCTCTCTAACCGGCGTAGTG----CCCGCCCTCCCGCCCGCTCGTTTCGTCGGT
646 TGCGCATCCCGTCTCTCT-GGCGGCGTAGTGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGT
* * * *
13157839 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGAGTTACGATAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAG
* * * * ** * *
13157904 GATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGTGCGTCCCGCTGCTCTAGTCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
13157969 CTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAA
840 CTGAGCGCCCGC--GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
** * * *
13158032 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCCG-ACTGAGGGTTGCGGTAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CCGAACCGAGGGTTGCGGCAGCACATGCTGG
* * *
13158096 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGTCGGAGCATCGTCAGAG
* * * **
13158161 AACCTGATCGACAGCATTGGGATTCCGGTGATCGGGGGGGCCGGGGTGGGGTGTGCGCACATGAT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGGTGTGCGCACATGAT
* * * * *
13158226 GTGTGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTTGAAAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
13158291 CACACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTTCTGCCAATAGCCATTAAAGTGTCCGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
13158356 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** *
13158421 TTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGG-GCCACAAA-TCCTTCCA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGCGTGA-AAACTCCTTCCG
* * ** *
13158484 AAAAAATTTAAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTC
450 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
13158549 GTCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
13158614 TGGCAATGGCTCGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACACTATCGATCCACAGC
580 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
13158679 TTGCGTAT-CAGTCTCTCTGGCCGACTTAGTGCCCGCCC-TCC-CT--CCCGCTCGTTTCGTCGG
645 TTGCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGG
* * * * *
13158739 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGAGTTACGATAGCA
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCA
* ** ** * *
13158804 GGATCGACAGCACGCAGAGGGGGACCC-AGTCGATCCTTGGCTTGCGCATCCCGCTGCTCTAGTC
774 GGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
13158868 GGCTGAGCACCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GGCTGAGCGCCCGC--GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
** * ** * * *
13158933 GCATATGGAGTTCATTCCCAGCCTAAGATCGGACCCCACTGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
13158998 CTCGGGCATGTGCTGGTGCCGCATTTTTCCTTCGTCGGGGCACCATCATCGGAGCATTGCCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTT-CTTCGT-GGGGCACCATCGTCGGAGCATCGTCAGAG
* ** *
13159063 AACCTGATCGACGGCATTGGGGTT-CGGTGATCGGGGGGGCCGGGTTGAGGTGTGCGCACATGAT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG--GGGGTGTGCGCACATGAT
* * *
13159127 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTTGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
13159192 CACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
13159257 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
13159322 TTGTGTATGCCAAAAAAAATACAAGGATCACGTCTACCAAGGTTGG-GGGCAAAACTCCTTCAGA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGTG-AAAACTCCTTCCGA
* * * *
13159386 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAAAAAATGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
13159451 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
13159516 GGCATTGGCATGCAGAAATATGAGGAGATGTGGCCT--ACGCCA-CT-CCACCCT-TCGAT-CA-
581 GGCATTGGCACGCAGAAATATGA--AGATGT-GCCTAAAC-CCACCTACCACCCTATCGATCCAC
* * * *
13159574 GGCTTGCGCATTCCCGTCTCTCTAGCAGCGTAGTG----CCCGCCC-CTGCACCCG-TCATTTCG
642 GGCTTGCGCA-TCCCGTCTCTCTGGCGGCGTAGTGCCCACCCGCCCGCT-CGCCCGCTCGTTTCG
* * ** * *
13159633 TC----GGC-TAGGCATACCAGAGTTCATTCCCAGTCAAAGATCAGA-CAAACTGAGGGTTGCGG
705 TCGGTTGGCTTAGGCATA-CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA
* * * * * * * * *
13159692 CAGTAGGATC-GCAGCAAC-CAAAAGGGGA-CTGGTCGATCCCAGGCTAG-GGATCCCGGCCCCT
769 TAGCAGGATCGGCAGC-ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC-GCCCCT
* * * * * *
13159753 TTGG-CGGCTGAGCTGCCGCACGCCCG-TTCGTTGGG-T-ACTT-TGCATATGG-GTT-A-TCCC
832 CTGGCCGGCTGAGC-GCC-CGCGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTTCC
13159810 AGTCTAA
894 AGTCTAA
* * *
13159817 G-AT-C--A----A-T--C-G-----G--C--A--G-A--GA-----AC-GCAGCTCATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
*** * * * * * * * * * * *
13159850 -TCGGG-ATGTGCT-AAACTGCCTTTTTCGATGTCG-CGGGAATCACCG-AGGAGAACCGACCG-
66 CTCGGGCATGTGCTGGTGCCGCATTTTTC--T-TCGTGGGGCACCATCGTCGGAGCATCGTCAGA
* * * * * * ** * **** *
13159909 GCGACATTGGA--GA-GG-TTTCGAGCCGAT-CG-GGGGCGGGGGAGG-TGTAGGCACATGATGT
128 G-AAC-CT-GACCGACGGCATT-G-G-GGTTCCGACGATCGGGGG-GGCCG--GGGGGGTG-TGC
* * * *** ** * * **** * * ***
13159967 GC-GATGGT-TGCTGGTACTTGCCTTATA-ATGG-CCTATCCCTCATCAAACCTCGAGAACTCA-
183 GCACATGATGTGC-GATGGGTG-CTGGTACTTGGCCCT-T--AT-ATTGGCCCCCTATCCCTCAT
* *** * * ** * * *
13160027 C--ACCCCCTTAA---AGA-GCATTTGAGA-T-----------TTTACAGGTTTGCTGCCGGTAG
242 CAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
**
13160074 CCATTAAAGTGTCTGAAATGGGGACACTTTCCTCAAATGGTCAC-AAATCTTGTACACTTCGAGT
306 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
13160138 TTTTAGCTG-ATTTTTTTATGTTATGCCAAC-AAAATACAAGGATC-CGTCTACCAGGTTTTGG-
371 TTTTAGCTGAATTTTTTTGTG-CATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGC
** * * * *
13160199 GCCAAAACTTCCTTCCGAAAAAA-TTTAACAAATCCC-AACCCCAAAAAGTTTCAAAAATCGTAA
434 GTGAAAAC-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
*
13160262 AAAACTAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGGTGAAGGCTTAAGGGA-CATTGTATG
498 AAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTTCAC-GTGAAGGCTTAAGGGACCATTGTATG
* * *
13160326 -ATTTACAAGCCATAAAAATGGCATTGGCATTGC------A-GAA-A--TGCCTAATACCTAGCT
561 AATTTACAAGCCATAAAAATGGCATTGGCA-CGCAGAAATATGAAGATGTGCCTAA-ACCCACCT
* * *
13160380 ACCACCTCTATCGATCCACGGCTTGCGCATCCTG-CTCTCTGGCAGCAATAGT--------GCCC
624 ACCACC-CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGGC-GTAGTGCCCACCCGCCC
* * * *
13160436 GC-CGCCTGCTCGTTCCGTCGGTT-GCTTAGGCATACAGAGTTCA-TCCCA-TCT-AGATTAGAC
687 GCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
13160496 C--A-CGA-TGTTGCGGTAGCA-TATCGGCAGCACGCAGAGAGGGACCTG-TCCGATCCCCGGCT
752 CGGACCGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAT-CGATCCCCGGCT
* * * * * *
13160555 AGCGCATCACGCCCCTCTAGCCGGCTGAGCGCCCACACAC---TCGT---TT--C----G--T--
816 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
13160604 GG-GTTGA----C--T-TAA
881 GGAGTTCATTTCCAGTCTAA
* * *
13160616 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-AATCCGAGGGTTGTGGCAGCACAAGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAA-CCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
13160680 GCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGATCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGTCGGAGCATCGTCAGAG
* * * *
13160745 AACCAGACC-AGCGGCATTAGGGTTACGACGAT---------C-GGGGGGTGTGCACACATGATG
129 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * *
13160799 TGCGATGGTTGCTAGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * * *
13160864 ACACCCCCTTAAACTGCATTTGTGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13160929 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * ** *
13160994 TATGCATGCCAACAAAAATACAAAGATCATGTCTACCAAGTTTGGGGCGAAAATTAGTTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGTGAAAACTCCTTCCGAAA
* * * *
13161059 AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTTGTT
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
13161124 TTACCACGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
13161189 CATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * * *
13161254 CACATCTGGTCTCTCTGGCCGACGTAGTG----CCCG--C-CT-ACCCACTCGTTTCGTCGGTGG
648 CGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTG
* * * * *
13161311 GCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACTGAGGGTTGC-AGTAGTAGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-TAGCAGG
* * * * * * * *
13161375 ATCGGTAGCACGCAGAGGGGGACCCAACCAATCACCAGCTTGCGTATCCCGCCCCTCTGGCTGGC
776 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
13161440 TGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCG--CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
* * * * * * *
13161502 GCATACGGAGTTCTTTGCCAGTCTAAGATCAGACC-AGACCAAGGGTTGTGGCAGAACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
** * * * * *
13161566 GCTTTGGCATGTGCTGGTGACGCATTTTTCTTCATCGGGGCACCATCGTCGGATCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGTCGGAGCATCGTCAGAG
* * *
13161631 AACCTGACC-AGCGGCATTAGGGTTACGACGAT---------C-GGGGGGTGTGCGCACATGACG
129 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
13161685 TGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13161750 ACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
13161815 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** *
13161880 TGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGTGAAAACTCCTTCCGAAA
* * * ** ** *
13161944 AAATTTTAAAAAGTCTCAAACCAAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
13162009 TTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
13162074 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACGGACCACCCTATCG--CC-CGCCCGT
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-GCTT
* * ** * ** ** * *** * * *
13162136 CCGC-T--CGTTTCGTC-GATTGGCTTAG-G--CATACG-GAGTTCATTC-C-C-ATTC-TAAGA
647 GCGCATCCCGTCTC-TCTG-GCGGCGTAGTGCCCACCCGCCCGCTCGCCCGCTCGTTTCGT-CGG
** * * * ** * * * * ** ***
13162189 TTGAATCAGAGC-GA-GG-GTT--GTGGCAG--TAGGATCGGCAGCATGCAGAGAGGGACCCG--
709 TTGGCTTAG-GCATACGGAGTTCATTCCCAGTCTAAGATCAG-A-C-CGGACCGAGGGTTGCGAT
* *** * * * ** * *
13162245 A-C-CGATC--C--C-CG-ACTTGTGCATCTCGCCACTC--TAGCC-GATTGAGCA-CCCGCACG
770 AGCAGGATCGGCAGCACGCAGAGGGGGA-C-C-CGA-TCGATCCCCGGCTTGCGCATCCCGC-C-
** * * * * * *** * *
13162298 CTCATTTCATGGGTTGACTTAG-GCATACGAAGCTC-ATTC-CCAG-T--C-TAAGCATACGAAG
829 C-C---TC-T-GGCCGGCTGAGCGC--CCG-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* *
13162356 TTCCTTCCCAGTCTAA
885 TTCATTTCCAGTCTAA
* *
13162372 G-AT-C---G---A-----A---T----T--G---G-ACTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
13162411 CTCTGGCATGTGCTGGTGCAGCATTTTTCTTTGTCGGGGCACCATCGTCAGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-GGGGCACCATCGTCGGAGCATCGTCAGAGA
* * *
13162476 ACCTGACC-AGCGACATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTACGCACATGATGT
130 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
13162540 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATAAAACCTCGAGAACTTA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13162605 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
13162669 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCAAGTTTTTAGTTGAGTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
13162734 GTGCTTGCCAACAAAAATACAAGTATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGTGAAAACTCCTTCCGAAAA
* * *
13162799 AATTTT-AAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCCTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
13162863 TGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
13162928 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
13162993 GCATCCCGTCTCTCTGGCCGGCGTAGTGCTC-GCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGG-CGGCGTAGTGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGG
* * *
13163057 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAAGGTTGC-AGTAGCAGGA
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-TAGCAGGA
* * * ** * *
13163121 TCAGCAGTACGCAGAGGGGGACCC-AGCCGATCCTTGGCTTGCGCATCCCGCCCTTCTGGCCGGT
777 TCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
13163185 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCG--CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
* * * * * * * * * * *
13163247 GCATACGGAGTTCATTCCCAGTCAAAGATTGAACTGGATCGAGGGTTTCGGTAGCACGTGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * *
13163312 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCCGGTCACCATTGTCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TGGGGCACCATCGTCGGAGCATCGTCAGAGA
* * * * * *
13163377 ACCTGACCGGCGACATTGGGGTTCCAACGATCGGGGGAGCCGGGGGGGTGTACGCACATGGTGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
13163442 TGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
13163507 ACCCCCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
13163572 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTAGCTGAATTTTTTTC
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
13163637 TGCTTGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGG
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
13163680 GGCCAAAACA
Statistics
Matches: 9232, Mismatches: 1281, Indels: 963
0.80 0.11 0.08
Matches are distributed among these distances:
799 4 0.00
800 3 0.00
801 1 0.00
802 1 0.00
803 1 0.00
804 5 0.00
805 1 0.00
806 1 0.00
807 1 0.00
808 2 0.00
810 1 0.00
811 2 0.00
812 1 0.00
814 1 0.00
815 3 0.00
816 6 0.00
817 32 0.00
818 31 0.00
819 21 0.00
820 35 0.00
821 12 0.00
822 15 0.00
823 52 0.01
824 25 0.00
825 12 0.00
826 4 0.00
827 4 0.00
829 57 0.01
830 69 0.01
831 73 0.01
832 44 0.00
833 80 0.01
834 23 0.00
835 4 0.00
836 2 0.00
838 61 0.01
839 36 0.00
840 54 0.01
841 64 0.01
842 56 0.01
844 110 0.01
845 4 0.00
846 2 0.00
847 10 0.00
848 46 0.00
849 55 0.01
850 39 0.00
851 42 0.00
852 32 0.00
853 338 0.04
854 96 0.01
855 16 0.00
856 3 0.00
857 4 0.00
858 16 0.00
859 10 0.00
860 62 0.01
861 4 0.00
862 4 0.00
863 4 0.00
864 11 0.00
865 9 0.00
866 3 0.00
867 8 0.00
868 18 0.00
869 25 0.00
870 48 0.01
871 78 0.01
872 3 0.00
873 5 0.00
874 11 0.00
875 139 0.02
876 564 0.06
877 206 0.02
878 441 0.05
879 158 0.02
880 19 0.00
881 15 0.00
882 44 0.00
883 23 0.00
884 280 0.03
885 171 0.02
886 415 0.04
887 10 0.00
888 12 0.00
889 8 0.00
890 32 0.00
891 69 0.01
892 254 0.03
893 236 0.03
894 238 0.03
895 73 0.01
896 122 0.01
897 91 0.01
898 216 0.02
899 14 0.00
900 35 0.00
901 909 0.10
902 784 0.08
903 463 0.05
904 598 0.06
905 6 0.00
906 39 0.00
907 143 0.02
908 296 0.03
909 2 0.00
911 1 0.00
914 2 0.00
917 88 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTGGGGCACCATCGTCGGAGCATCGTCAGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGTGAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCGGCGTAGTGCCCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
Found at i:13157154 original size:26 final size:26
Alignment explanation
Indices: 13157104--13157156 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13157094 GTTGACTGAG
* *
13157104 GCATACGGAGTTCTTTTCCAGTCTAA
1 GCATACAGAGTTCTTTCCCAGTCTAA
13157130 GCATACAGAGTTCTTTCCCTA-TCTAA
1 GCATACAGAGTTCTTTCCC-AGTCTAA
13157156 G
1 G
13157157 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTCTTTCCCAGTCTAA
Found at i:13158042 original size:26 final size:26
Alignment explanation
Indices: 13158006--13158058 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13157996 GTTGACTTAG
13158006 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
*
13158032 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
13158058 G
1 G
13158059 ATCAGACCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:13158936 original size:26 final size:26
Alignment explanation
Indices: 13158907--13158959 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13158897 GTTGACTTAG
*
13158907 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
13158933 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
13158959 G
1 G
13158960 ATCGGACCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:13161512 original size:26 final size:26
Alignment explanation
Indices: 13161476--13161528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13161466 GTTGACTTAG
13161476 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
13161502 GCATACGGAGTTCTTTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13161528 G
1 G
13161529 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13162349 original size:26 final size:26
Alignment explanation
Indices: 13162320--13162372 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13162310 GTTGACTTAG
13162320 GCATACGAAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
* *
13162346 GCATACGAAGTTCCTTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
13162372 G
1 G
13162373 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:13162917 original size:853 final size:848
Alignment explanation
Indices: 13160613--13163699 Score: 3321
Period size: 886 Copynumber: 3.5 Consensus size: 848
13160603 TGGGTTGACT
* ** * * *
13160613 TAAGCATACAGAGTTCATTCCCAGTCTAAGATC-AGAC-CAATCCGAGGGTTGTGGCAGCACAAG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACTGGA-CTGAGGGTTGCGGCAGCACATG
* * *
13160676 CTGGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGATCATCGCC
64 CTGGGCTTGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* * *
13160741 GGAGAACCAGACCAGCGGCATTAGGGTTACGACGATCGGGGGGTGTGCACACATGATGTGCGATG
129 GGAGAACCTGACCAGCGACATTAGGGTTACGACGATCGGGGGGTGTGCGCACATGATGTGCGATG
* *
13160806 GTTGCTAGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
194 GTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
** * *
13160871 CTTAAACTGCATTTGTGATTTTACAGGTTTGCT-ACCAGTAGCCATTAAAGTGTTTGAAATGGGG
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGA-CAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
13160935 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTATGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * ** *
13161000 TGCCAACAAAAATACAAAGATCATGTCTACCAAGTTTGGGGCGAAAATTAGTTCTGAAAAAATTT
388 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * * *
13161065 TAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTTGTTTTACCA
453 T-AAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
13161130 CGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
13161195 CAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATC
582 CAAGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCC--T--AT---C-G--T-C-CA--
*
13161260 TGGTCTCTCTGGCCGACGTAGTGCCCGCCTACCCACTCGTTTCGTCGGTGGGCTTAGGCATACGG
633 --------C--GCC--C---GT--CCG--------CTCGTTTCGTCGGTCGGCTTAGGCATACGG
* * * * * * * * * *
13161325 AGTTCATTCTCAGTCTAAGA-TCAGACCAGA-CTGAGGGTTGCAGTAGTAGAATCGGTAGCACGC
673 AGTTCATTCCCATTCTAAGATTGA-ATCAGAGCAGAGGGTTGTAGCAGTAGGATCGGCAGCATGC
* * * * * * * * * *
13161388 AGAGGGGGACCCAACCAATCACC-AGCTTGCGTATCCCGCCCCTCTGGCTGGCTGAGCACCCGCA
737 AGAGAGGGACCCGACCGATCCCCGAGCTTGTGCATCTCGCCACTCTGGCCGGTTGAGCACCCGCA
13161452 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
802 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * ** ** * *
13161499 TAAGCATACGGAGTTCTTTGCCAGTCTAAGATC-AGACCAGACCAAGGGTTGTGGCAGAACATGC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACTGGACTGAGGGTTGCGGCAGCACATGC
* * * *
13161563 TGGGCTTTGGCATGTGCTGGTG-ACGCATTTTTCTTCATCGGGGCACCATCGTCGGATCATCATC
65 TGGGCTTGGGCATGTGCTGGTGCA-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* *
13161627 GGAGAACCTGACCAGCGGCATTAGGGTTACGACGATCGGGGGGTGTGCGCACATGACGTGCGATG
129 GGAGAACCTGACCAGCGACATTAGGGTTACGACGATCGGGGGGTGTGCGCACATGATGTGCGATG
*
13161692 GTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
194 GTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
13161757 CTTAAAGTGCATTTGAGATTTTACAGGTTTGCTG-CTAGTAGCCATTAAAGTGTCTGAAATGGGG
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGAC-AGTAGCCATTAAAGTGTCTGAAATGGGG
13161821 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
13161886 AGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAATTT
388 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** ** *
13161950 TAAAAAGTCTCA-AACCAAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
453 TAAAAA-TC-CAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
13162014 ATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
516 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
13162079 GCATGCAGAAATATGAAGATGTGCCTAAACCCACGGACCACCCTATCG-CC-CGCCCGTCCGCTC
581 GCAAGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGTCCACGCCCGTCCGCTC
* *
13162142 GTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTGAATCAGAGC-GAGGG
646 GTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTGAATCAGAGCAGAGGG
*
13162206 TTGTGGCAGTAGGATCGGCAGCATGCAGAGAGGGACCCGACCGATCCCCGA-CTTGTGCATCTCG
711 TTGTAGCAGTAGGATCGGCAGCATGCAGAGAGGGACCCGACCGATCCCCGAGCTTGTGCATCTCG
* * * * *
13162270 CCACTCTAGCCGATTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGCTCAT
776 CCACTCTGGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
13162335 TCCCAGTC
841 TCCCAGTC
* * * *
13162343 TAAGCATACGAAGTTCCTTCCCAGTCTAAGATCGAATTGGACTGAGGGTTGCGGTAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCGGCAGCACATGCT
* * *
13162408 GGGCTCT-GGCATGTGCTGGTGCAGCATTTTTCTTTGTCGGGGCACCATCGTCAGAGCATCGTTG
66 GGGCT-TGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCG
* *
13162472 GAGAACCTGACCAGCGACATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTACGCACATGA
130 GAGAACCTGACCAGCGACATTAGGGTTACGACGATC-GGGGGGT-------GTG--CGCACATGA
* * *
13162537 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATAAAACCTCGAGAAC
185 TGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
13162602 TTACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTCTG
250 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTCTG
* * * *
13162666 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCAAGTTTTTAGTTGAGTTTT
315 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
13162731 TTTGTGCTTGCCAACAAAAATACAAGTATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
380 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
13162796 AAAAATTTTAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCCT
445 AAAAATTTTAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
13162861 CTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
510 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
13162926 GCATTGGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
575 GCATTGGCA-AGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCG-TCCA-----
* * * ** *
13162990 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCGCCCGCCCGCCCGCTCGT-TTCGT-CGG
633 --CG---CCCG--TC-C--G-C-TCGT--T--TCGTCG---G-TCG---GCT--TAGGCATACGG
* * * * * * * *
13163053 TTGGCTTAGGCATACGGAGTTCATTCCT-AG-TCTAAGATCAGACCGAACCGAAGGTTGCAGTAG
673 --AG-TT---CATTC-----CCATT-CTAAGAT-TGA-ATCAGA--G--CAGAGGGTTGTAGCAG
* * * * * ** * *
13163116 CAGGATCAGCAGTACGCAGAGGGGGACCC-AGCCGATCCTTG-GCTTGCGCATCCCGCC-CTTCT
720 TAGGATCGGCAGCATGCAGAGAGGGACCCGA-CCGATCCCCGAGCTTGTGCATCTCGCCAC-TCT
* *
13163178 GGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
783 GGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
13163243 C
848 C
* * * * *
13163244 TAAGCATACGGAGTTCATTCCCAGTCAAAGATTGAACTGGA-TCGAGGGTTTCGGTAGCACGTGC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACT-GAGGGTTGCGGCAGCACATGC
* * * * * *
13163308 TAGGCTTGGGCATGTGCTGGTGCCA-CATTTTTCTTCGCCCGGTCACCATTGTCGAAGCATCGTC
65 TGGGCTTGGGCATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* * * *
13163372 GGAGAACCTGACCGGCGACATTGGGGTTCCAACGATCGGGGGAGCCGGGGGGGTGTACGCACATG
129 GGAGAACCTGACCAGCGACATTAGGGTT---ACGA-C----GA-TC-GGGGGGTGTGCGCACATG
* * * *
13163437 GTGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAA
184 ATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
13163502 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCACTAAAGTGTTT
249 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTCT
* *
13163567 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTAGCTGAATTT
314 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
13163632 TTTTCTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACACCTTTCG
379 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
13163697 AAA
444 AAA
13163700 CTTCATGTGA
Statistics
Matches: 1906, Mismatches: 201, Indels: 172
0.84 0.09 0.08
Matches are distributed among these distances:
844 309 0.16
845 14 0.01
852 8 0.00
853 329 0.17
854 90 0.05
855 2 0.00
857 1 0.00
859 3 0.00
861 1 0.00
863 2 0.00
866 4 0.00
868 2 0.00
869 1 0.00
871 1 0.00
872 2 0.00
873 4 0.00
875 1 0.00
877 6 0.00
878 1 0.00
881 3 0.00
883 1 0.00
884 11 0.01
885 156 0.08
886 409 0.21
887 3 0.00
890 4 0.00
894 1 0.00
895 8 0.00
896 8 0.00
898 1 0.00
900 5 0.00
901 321 0.17
902 177 0.09
903 2 0.00
904 3 0.00
905 1 0.00
909 2 0.00
910 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (848 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCGGCAGCACATGCT
GGGCTTGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGG
AGAACCTGACCAGCGACATTAGGGTTACGACGATCGGGGGGTGTGCGCACATGATGTGCGATGGT
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
TAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGTCCACGCCCGTCCGCTCGTTTC
GTCGGTCGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTGAATCAGAGCAGAGGGTTGTA
GCAGTAGGATCGGCAGCATGCAGAGAGGGACCCGACCGATCCCCGAGCTTGTGCATCTCGCCACT
CTGGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTC
Found at i:13164938 original size:26 final size:26
Alignment explanation
Indices: 13164908--13164960 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13164898 GTTGACTTAG
13164908 GCATACGGAGTTCATT-CCAGGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13164934 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13164960 G
1 G
13164961 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13165826 original size:26 final size:25
Alignment explanation
Indices: 13165793--13165864 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 25
13165783 TGGATTGACT
13165793 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCC-AGTC
*
13165819 TAAGCATACAGAGTTCATTGCCAGTC
1 TAAGCATACGGAGTTCATT-CCAGTC
13165845 TAAGCATACGGAGTTCATTC
1 TAAGCATACGGAGTTCATTC
13165865 GAGTGTTGCG
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
25 1 0.02
26 40 0.93
27 2 0.05
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (25 bp):
TAAGCATACGGAGTTCATTCCAGTC
Found at i:13166553 original size:900 final size:887
Alignment explanation
Indices: 13163696--13166791 Score: 3467
Period size: 900 Copynumber: 3.5 Consensus size: 887
13163686 AACACCTTTC
*
13163696 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
1 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* ** *
13163761 ACATAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCAATCGATCCACAACTTGTGCATCC
66 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCC
* * ** *
13163826 CGTCTCTCTG---GTCGGCACCGCCCGTCCGCCCGCTCATTTCGTCGGAT-GCCTTAGGCATACA
131 CGTCTCTCTGCCTGAC-GTAGTGCCCGCCCGCCCGCTCATTTCGTCGGATAG-CTTAGGCATACA
* * * *
13163887 GAGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTT-AAGACAGCAGGATCGGCAGCACGC
194 GAGTTCATTCCCAGTCTAAGATCAAATCGGACTGAGGGTTGCA-ACAGCAGGATCGACAGCACGC
* * *
13163951 AGAGGGGGACCCGACCAATCCCCGGCTTGT-GCATCCCACCCCTTTGGCTGGCTGAGCGCCCGCA
258 AGAGGGGGACCCGACCGATCCCCGGCTT-TCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
*
13164015 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-AAGCATACGGAGTTCA-
322 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
13164078 TCCTAGTCTAAGATA-AGATAGACCGA-AGTTGCAGCCAGCAACATGCTGGGCTCGGCATGTGCC
387 TCCCAGTCTAAGATACGGATACACCGAGAGTTGC-GACAGC-ACATGCTGGGCTCGGCATGTG-C
* * * *
13164141 TGGTGCCGTAATTTCTTC-TCTTCGGGGCCCCATCGCCGAGCATCGTCGAGAACCCTGACCGAAC
449 TGGTGCCGT-ATTT-TTCTTCGTCGGGGCACCATCGCGGAGCATCGTGGAGAA-CCTGACCG-AC
* *
13164205 AGCATTGGG--CCGTCGATC-GA-GGGCCGGGGTGTGCGCACATGAATG-TCGAT-GGTGCT-GT
510 GGCATTGGGTTCCGACGATCGGAGGGGCCGGGGTGTGCGCACATG-ATGTTCGATGGGTGCTGGT
** * *
13164263 ACTT-G---TTATCGT-G-CCCCTA-----GA-CAAACCTCG-GAAC-CACACCCCCTTATAGAG
574 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
13164314 CA--TGAGA--TGATA-GTTTGCTTGCGCAGTAGCCATTAAAAGTGTCTG-AATGGGGACAACTT
639 CATTTGAGATTTTACAGGTTTGC-TGCGCAGTAGCCATT-AAAGTGTCTGAAATGGGGAC-ACTT
* * * *
13164373 TTTTC-AATGGTCGCAAAA-C-TGTATCACTTCGA-TTTTTACCTGAA--TGTTTCTGCAT-ACA
701 TTTTCAAATGGTCACAAAATCTTGTA-CACTTCGAGTTTTTAGCT-AATTTGTTTGTGCATGCCA
*
13164431 ACAAAAA-ACAAGGATCATG-CTACCGAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
764 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT-AAA
* * *
13164494 AATCACGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTGGCCAT
828 AATC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCAT
*
13164555 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGC
1 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*** * * *
13164620 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCACATCC
66 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCC
* * *
13164685 CGTCTCTCTGTCTGACGTAGTGCCCGCCCGTCCCCCCGCCCGCTCGTTTCGTCGGTTAGCTTAGG
131 CGTCTCTCTGCCTGACGTAGT----GCCCG----CCCGCCCGCTCATTTCGTCGGATAGCTTAGG
* * *** * *
13164750 GATACGGAGTTCATTCCCAGTCTAAGAT-AAATCCGGACTGAGGGTTGTTGCAGCAGGATAGGCA
188 CATACAGAGTTCATTCCCAGTCTAAGATCAAAT-CGGACTGAGGGTTGCAACAGCAGGATCGACA
* * * * *
13164814 GCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGC
252 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTTCGCATCCCACCCCTCTGGCCGGCTGAGCGC
** *
13164879 TTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGGTCTAAGCATACGGA
317 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACGGA
* *
13164943 GTTCATTCCCAGTCTAAGAT-CGGA-CCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
381 GTTCATTCCCAGTCTAAGATACGGATAC--ACCGAGAGTTGCGACAGCACATGCTGGGCTC-GGC
* * ** * * ** *
13165006 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCTCTGTCGCCGAAGAATCACCGAAGAACCTGAC
443 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATC-GTGGAGAACCTGAC
* * * * * * *
13165071 TGGCGACAGTAGGGTTCCGGCGATCGG-GGGGCTGGGGTGTGCGCACATGATGTGCAGATGGGGT
506 CGACGGCA-TTGGGTTCCGACGATCGGAGGGGCCGGGGTGTGCGCACATGATGTTC-GAT-GGGT
13165135 GCTGGTACTTGGCCCTTATATTGGCCCTCCGTATCCCCTCATCTAAACCTCGAGACACT-ACACC
568 GCTGGTACTTGGCCCTTATATTGGCCC-CC-TAT-CCCTCATC-AAACCTCGAGA-ACTCACACC
* * *
13165199 CGCATAAAGAGCATGTTGAGATTTTACCAGGTTGGTCTGCGCAGTAGCCATGTAAAGTGTCCTGA
628 CCCTTAAAGAGCAT-TTGAGATTTTA-CAGGTTTG-CTGCGCAGTAGCCAT-TAAAGTGT-CTGA
*
13165264 AAT-GGGACACTTTTTTCAAAT-GTCAC-AAATCTTGTACACTTTCGAG-TTTTAGCTGATTTGT
688 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTAATTTGT
* * * * *
13165325 TTGTGCATGCC-ACAAAAATACAAGGATCA-ATCTACTAAGCTTGGGGTCGAAACTCCTTTCGAA
752 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * * ** * *
13165388 AAAA--TTAAAAATCCAAACCGGAAAAAGGTTGAAAAATTGTGAAAAATAGAAAATGAGTCG-TC
817 AAAATTTTAAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTT
13165450 TGCCAT
882 TGCCAT
* *
13165456 GCAAC-TCATGTGAAGGC-TAAGGGACCATTGT-TGAA-TTACAAGCCAT-AAAATGGCATTGGC
1 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
13165516 ATAAAGGAAA-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGCATC
66 ACATA-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATC
* * *
13165580 CCGTCTCTCTGCCTGACGTAGTGCCCGCCCGCCCGCTCATTTCGTTGGTTAGCTTAGGCATACGG
130 CCGTCTCTCTGCCTGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGATAGCTTAGGCATACAG
* * * * * * *
13165645 AGTTCATTCCCAGTCTAAGATCAAATTGAACTGAGGATTGCAACAACAGTATCGACTGCACGTAG
195 AGTTCATTCCCAGTCTAAGATCAAATCGGACTGAGGGTTGCAACAGCAGGATCGACAGCACGCAG
* * * *** *
13165710 AGGGGGACCCGATCGATCCCTGGCTTTCGCATCCCACCCCTCTGGCCAGCTGAGCAATCGCATGC
260 AGGGGGACCCGACCGATCCCCGGCTTTCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * *
13165775 TCGTTTCATGGATTGACTTAAGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTGC
325 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * ** *
13165840 CAGTCTAAGCATACGGAGTTCATTCGAGTGTTGCGGTAGCACATACTGGGCTCGAGCATGTGCTG
390 CAGTCTAAG-ATACGGA-TACA-CCGAGAGTTGCGACAGCACATGCTGGGCTCG-GCATGTGCTG
* *
13165905 GTGCCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGACCGACGGCA
451 GTGCCGTATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCG-TGGAGAACCTGACCGACGGCA
13165970 TTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTA
514 TT-GGGTTCCGACGATCGGAGGGGCC---GGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTA
* *
13166035 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAAACCTTGAGAACTCACACCCTCTTAAAGAG
575 CTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
13166100 GATTTGAGATTTTACAGGTTTGCTGC-CAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTT
639 CATTTGAGATTTTACAGGTTTGCTGCGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
13166164 TCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAA
704 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTGTTTGTGCATGCCAACAA
* * *
13166229 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAGATC
768 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA-ATC
*
13166294 CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTACCAT
832 C-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCAT
13166351 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
1 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
13166416 ACGTAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCAATCGATCCATGGCTTGCGCATCC
66 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCC
* * * *
13166481 CGTCTCTCTGGCCAG-CATAGTGCCCGCCCGCCCGTTCATTTCGTCGGATGGCTTAGGCATACAG
131 CGTCTCTCT-GCCTGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGATAGCTTAGGCATACAG
* * * * * * * * *
13166545 AGTTCATTCTCAGTCCAAGGTCAGACCGGACCGAGGGTTGCGATAGCAGGATC-AGCAGCACGTA
195 AGTTCATTCCCAGTCTAAGATCAAATCGGACTGAGGGTTGCAACAGCAGGATCGA-CAGCACGCA
* * * * * * * *
13166609 GAGAGGGACCCGACCGATCCCCGGCTTACGCATCTCGCCCCTCTAGCCGACTGAGGGCCCGCATG
259 GAGGGGGACCCGACCGATCCCCGGCTTTCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACG
** *
13166674 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTC
324 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
13166739 CCAGTCTAAGAT-CGGA-CCGTACCGAGGGTTACGGCAGCACATGCTGGGCTCGG
389 CCAGTCTAAGATACGGATAC--ACCGAGAGTTGCGACAGCACATGCTGGGCTCGG
13166792 ACATTGCCGG
Statistics
Matches: 1878, Mismatches: 245, Indels: 191
0.81 0.11 0.08
Matches are distributed among these distances:
859 128 0.07
861 2 0.00
862 2 0.00
865 5 0.00
868 6 0.00
869 180 0.10
870 37 0.02
871 54 0.03
872 22 0.01
873 16 0.01
874 22 0.01
875 3 0.00
877 6 0.00
878 6 0.00
879 1 0.00
882 5 0.00
883 1 0.00
884 9 0.00
885 28 0.01
886 21 0.01
887 25 0.01
888 226 0.12
889 40 0.02
890 71 0.04
891 102 0.05
892 20 0.01
893 36 0.02
894 50 0.03
895 33 0.02
896 119 0.06
897 54 0.03
898 13 0.01
899 37 0.02
900 297 0.16
901 15 0.01
902 43 0.02
903 50 0.03
904 31 0.02
905 20 0.01
906 42 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (887 bp):
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGCCTGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGATAGCTTAGGCATACAGA
GTTCATTCCCAGTCTAAGATCAAATCGGACTGAGGGTTGCAACAGCAGGATCGACAGCACGCAGA
GGGGGACCCGACCGATCCCCGGCTTTCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATACGGATACACCGAGAGTTGCGACAGCACATGCTGGGCTCGGCATGTGCTGGTGCC
GTATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGTGGAGAACCTGACCGACGGCATTGGGTT
CCGACGATCGGAGGGGCCGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTAATTTGTTTGTGCATGCCAACAAAAATACAAGGATC
ATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAATCCGAACCGCAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCAT
Found at i:13166725 original size:26 final size:26
Alignment explanation
Indices: 13166696--13166748 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13166686 GTTGACTTAG
*
13166696 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13166722 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13166748 G
1 G
13166749 ATCGGACCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13167545 original size:26 final size:26
Alignment explanation
Indices: 13167509--13167558 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13167499 GACTTAGGCA
*
13167509 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
13167535 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
13167559 ATCGGACCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:13167936 original size:811 final size:803
Alignment explanation
Indices: 13165994--13168064 Score: 3556
Period size: 811 Copynumber: 2.6 Consensus size: 803
13165984 ATCGGAGGGG
* *
13165994 CCGGGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
1 CCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
** * * * *
13166059 TCCCTCATCGAAACCTTGAGAACTCACACCCTCTTAAAGAGGATTTGAGATTTTACAGGTTTGCT
66 TCCCTCATC-AAACCTCAAGAACTCACACCCGCTTAAGGAGCATTTGAGATTTTATAGGTTTGCT
* *
13166124 GCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
130 GCCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
13166189 CTTAGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
195 CTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
13166254 TTTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAGATCCTGAACCGCAAAAAGTTTCAAAAAT
260 TTTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAGATCCTGAACCGCAAAAAGTTTCAAAAAT
13166319 CATGAAAAATAGAAAACGAGTCGTTTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
325 CATGAAAAATAGAAAACGAGTCGTTTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
13166384 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACC
390 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACC
* * *
13166449 TACCACCCAATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCCGCCC
455 TACCACCCAATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCAGCATAGTGCCCGCCCGCCC
*
13166514 GTTCATTTCGTCGGATGGCTTAGGCATACAGAGTTCATTCTCAGTCCAAGGTCAGACCGGACCGA
520 GTTCATTTCATCGGATGGCTTAGGCATACAGAGTTCATTCTCAGTCCAAGGTCAGACCGGACCGA
13166579 GGGTTGCGATAGCAGGATCAGCAGCACGTAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCT
585 GGGTTGCGATAGCAGGATCAGCAGCACGTAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCT
*
13166644 CGCCCCTCTAGCCGACTGAGGGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTC
650 CGCCCCTCTAGCCGACTGAGGGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
13166709 ATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGTACCGAGGGTTACGGC
715 ATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGCACCGAGGGTTACGGC
**
13166774 AGCACATGCTGGGCTCGGACATTG
780 AGCACATGCTGGGCTCGGACATCA
13166798 CC-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
1 CCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
13166862 TCCCTCATCAAACCTCAAGAACTCACACCCGCTTAAGGAGCATTTGAGATTTTATAGGTTTGCTG
66 TCCCTCATCAAACCTCAAGAACTCACACCCGCTTAAGGAGCATTTGAGATTTTATAGGTTTGCTG
*
13166927 CCAGTAGCCATTAAATTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
131 CCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
13166992 TTAGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
196 TTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
13167057 TTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAGATCCTGAACCGCAAAAAGTTTCAAAAATC
261 TTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAGATCCTGAACCGCAAAAAGTTTCAAAAATC
13167122 ATGAAAAATAGAAAACGAGTCGTTTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
326 ATGAAAAATAGAAAACGAGTCGTTTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
13167187 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCT
391 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCT
13167252 ACCACCCAATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCAGCATAGTGCCTGCCCGCCCG
456 ACCACCCAATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCAGCATA--G--T----GCCCG
* *
13167317 CCCGCCCGTTCATTTCATCGGATGGCTTAGGCATACAGAGTTCTTTCTCAGTCCAAGGTCAGATC
513 CCCGCCCGTTCATTTCATCGGATGGCTTAGGCATACAGAGTTCATTCTCAGTCCAAGGTCAGACC
* *
13167382 GGACCGAGGGTTGCGATAGCAGGATCAGCAGCACGTAGAGAGGGACCCGACCGATCCCCGGTTTG
578 GGACCGAGGGTTGCGATAGCAGGATCAGCAGCACGTAGAGAGGGACCCGACCGATCCCCGGCTTA
*
13167447 CGCATCTCGCCCCTCTAGCCGATTGAGGGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATAC
643 CGCATCTCGCCCCTCTAGCCGACTGAGGGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
13167512 GGAGTTCATTCCCAGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAGATCGGACCGCACCGAGGG
708 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGCACCGAGGG
*
13167577 TTACGGCAGCACATGCTGGGCTCGGGCATCA
773 TTACGGCAGCACATGCTGGGCTCGGACATCA
13167608 CCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
1 CCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
13167673 TCCCTCATCAAACCTCAAGAACTCACACCCGCTTAAGGAGCATTTGAGATTTTATAGGTTTGCTG
66 TCCCTCATCAAACCTCAAGAACTCACACCCGCTTAAGGAGCATTTGAGATTTTATAGGTTTGCTG
*
13167738 CCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACAC
131 CCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* ** * *
13167803 TTCGAGTTTTTAGCTGAAAGTTTTTGTGCATGCCAACAAAAA-AGCAGGGATCACGTCTACAAAG
196 TTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA-CAAGGATCACGTCTACCAAG
* * * * *
13167867 TTTGGGGCCAAAAATCGTTCCAAAAAAATTTTTAAAA-AT-CTCGAACTGTAAAAAGTTTTAAAA
260 TTTGGGGCCAAAACTCATTCCAAAAAAA-TTTTAAAAGATCCT-GAACCGCAAAAAGTTTCAAAA
* * ** *
13167930 ATCATGAAAAATAGAAAATGAGTTGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
323 ATCATGAAAAATAGAAAACGAGTCGTTTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * * *
13167995 GTATGAATTTACAAGGCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCA
388 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACCCA
13168060 CCTAC
453 CCTAC
13168065 TAGTTGGCTT
Statistics
Matches: 1203, Mismatches: 52, Indels: 17
0.95 0.04 0.01
Matches are distributed among these distances:
802 416 0.35
803 69 0.06
804 3 0.00
806 1 0.00
810 289 0.24
811 417 0.35
812 8 0.01
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (803 bp):
CCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCAAGAACTCACACCCGCTTAAGGAGCATTTGAGATTTTATAGGTTTGCTG
CCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAGATCCTGAACCGCAAAAAGTTTCAAAAATC
ATGAAAAATAGAAAACGAGTCGTTTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCT
ACCACCCAATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCAGCATAGTGCCCGCCCGCCCG
TTCATTTCATCGGATGGCTTAGGCATACAGAGTTCATTCTCAGTCCAAGGTCAGACCGGACCGAG
GGTTGCGATAGCAGGATCAGCAGCACGTAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCTC
GCCCCTCTAGCCGACTGAGGGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGCACCGAGGGTTACGGCA
GCACATGCTGGGCTCGGACATCA
Found at i:13168658 original size:821 final size:831
Alignment explanation
Indices: 13168125--13173280 Score: 2600
Period size: 876 Copynumber: 5.9 Consensus size: 831
13168115 CCGAAGGTTG
** * * * *
13168125 CGGCAGGAGGATCAGCAGCACGTAAAGGGGGACCCG-GTCGATCCCCGGCTTGCGCATCCTGCCC
1 CGGCAGGAGGATCAGCAGCACACAAAGGGGGACCCGAATCGATCCCCGACTTGCACATCCCGCCC
* * ** *
13168189 CTTTGGCCAACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCC
66 CTCTGGCCAACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCATACAGAGTTAATTCC
* * *
13168254 CAGTCTAAGGATACGAAGTTCATTCCCAATCTAACATCGGACCGGACCGAGGGTTGCGGCAGCAC
131 CAGTCTAAGCATACGAAGTTCATTCCCAATCTAACATCAGACCAGACCGAGGGTTGCGGCAGCAC
* *
13168319 ATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTAGCATCGCCGGAGCATC
196 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGG--GCA---CC--AGCATC
13168384 ACTGGAGAACCTGACCGGCAGCATTGGGGTTCTGGTGATCGGGGGGGCC-GGGGGTGTGCGCACA
253 A---GAGAACCTGACCGGCAGCATTGGGGTTCTGGTGATC-GGGGGGCCGGGGGGTGTGCGCACA
13168448 TGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
314 TGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
13168513 AATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGT
379 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
13168578 CTGAAATGGGGACACTTTTTTAAAATTGTTAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
444 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
13168643 TTTTTTGTACATGCCAACAAAAATAC-GAGGATAACGTCTACCAA-TATTCGGGCC-AAAA-C--
509 TTTTTTGTGCATGCCAACAAAAA-ACAG-GGATCACGTCTACCAAGT-TTGGGGCCAAAAATCGT
* * * *
13168702 TCCTGAAAAAA-TTTTAAGAAGTCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
571 TCC-AAAAAAATTTTTAA-AAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAA
13168766 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
634 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * ** *
13168831 TAAAAAAGGCATTGGCACACAGAAATATCAAGATGTGCCTAAACCCACCTGCCACCCTATCGATC
699 TAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCACCT--CA-CCTA-CGAT-
* ** * *
13168896 CACGGCTTGCGCACCCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
759 C-CGGCTTGCGCA--C-TACGCAAG--TTGTCGATT-GC----GC--AC-GAGTTCA-T-CAAGT
* *
13168961 GTAAGATCGGATCAAACTGAGAGTTA
808 ATAAGACCGGATCAAAC--AGAGTTA
* * * * *
13168987 CGGTAGTAGGATCGGCAGCACACAGAGGGGGACCTGAATCGATCCCCGACTTGCACATCCCGCCC
1 CGGCAGGAGGATCAGCAGCACACAAAGGGGGACCCGAATCGATCCCCGACTTGCACATCCCGCCC
*** * * *
13169052 CTCTGGCTGGCTGAGTGCCCGCATGCTCGTTTTGTGGGTTGACTAAGGCATACAGAGTTAATTCC
66 CTCTGGCCAACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCATACAGAGTTAATTCC
* * * *
13169117 TAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAC
131 CAGTCTAAGCATACGAAGTTCATTCCCAATCTAACATCAGACCAGACCGAGGGTTGCGGCAGCAC
* *
13169182 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACC
196 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAGCATCAGAGAACC
* **
13169247 TGATCGGTGGCATTGGGGTTCTGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
261 TGACCGGCAGCATTGGGGTTCTGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
13169312 GGTTCTGGTA-TTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTTGAGAACTCACACCC
326 GGTGCTGGTACTTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
**
13169376 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCAAAATGGGG
390 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
13169441 ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTGTTTTGTGCA
455 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
13169506 TGCCAACAAATATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCGTT-CAAAAAAATT
520 TGCCAACAAA-AAACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CGTTCCAAAAAAATT
** * * * ** *
13169570 TGAAAAAATCTCGAACCAT-AAAATTTTTGAAAATCATGAAAAATAGAAAACAAGACGTCTTGCC
583 TTTAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCC
* * * *
13169634 ATGAAACTTCATGTGATGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATG
648 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATT
* *
13169699 GA-ATGTAGAAATATGAAGATGTGTCTAAACCCACCTTACACCCTATCGATCCATGGCTTACGCA
712 GACATGCAGAAATATGAAGATGTGCCTAAACCCACC-T-CA-CCTA-CGATCC--GGCTT--G--
* * * * * * * *
13169763 TCCTGTTTCTCTGATCGACGTAGTGCCTGCCCGGTCGCCCGCCCGCTCATTTCGTCGATTAGTTT
767 --C-G---CACT-A-CG-C-AAGT---TG-TCGATTG--CGCACG---AGTTCATC-A--AG--T
*** **
13169828 AGGCATACAGAGTTGATTCCCAGTCTA-AGATCAGACTGAATTGA
808 ----ATA-AGACCGGA-T--CAAAC-AGAG-T----------T-A
* * * * ** * * *
13169872 GGGTTGCAGTAGTAGGATC-GACAGCACGCAGAGGGGGACCTG-GCCGATCCCTGGCTTGCGCAT
1 -CG--GCAG--G-AGGATCAG-CAGCACACAAAGGGGGACCCGAATCGATCCCCGACTTGCACAT
* * **** * * * *
13169935 CTCGCCCATCTGGCTGGTTGAGCACCCGCACGCTCATTTCGTGGGTTAACTTAGGCATAC-GAAG
59 CCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCATACAG-AG
* * * * * * *
13169999 TTCATTCCCATTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACTGAGGGTTG
123 TTAATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAACATCAG-ACCAGACCGAGGGTTG
* * * * ** *
13170063 TGGCTGCACATGTTGTGCTCGGGCATGTGCTGGTGCCGTATTTTTCCTCGTCGGGGCACCATCAC
187 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG------CAC
* * *
13170128 CGGAGCATCGCCGGAGAACCTGACCGCCAGCATTGGGGTT-TCGGGGATCGGGGGGGCCGGGGTG
246 C--AGCAT---CAGAGAACCTGACCGGCAGCATTGGGGTTCT-GGTGATC-GGGGGGCC--GG-G
* * *
13170192 GGGTGTGCGCACATGATGTGCAATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
301 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTC
* * *
13170257 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGTTGCCAGTG
366 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * * *
13170322 GCCACTAAAGTGCCTGAAATGGGGACACTTCTTTCAAATGGTCAC-AAATCTTATACACTTCGAT
431 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
13170386 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
496 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-ACAGGGATCACGTCTACCAAGTTTGGGG
* * * ** * * * *
13170451 CGAAAACTCCTT-CTGAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAA
560 CCAAAAATCGTTCCAAAAAAATTTTTAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAA
* *
13170515 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATT
625 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
13170580 TACAAGCCATAAAAATGGCATTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCA
690 TACAAGCCATAAAAATGGCATT-G-ACATGCAGAAATATGAAGATGTGCCTAAACCCACCT--CA
* * * * * * * * * * **
13170643 CCCTATCGATCCACGACTTGTGCATCCTGTTTCTCTGGCCGACGTAGAGCCCGCTCGCCCGCCCG
751 -CCTA-CGAT-C-CGGCTTGCGCA--C----T-AC--G-C-AAGT--TG-TCGATTGCGCACGAG
** * ** ** * * *
13170708 CCCACTC--GTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
798 TTCA-TCAAGTAT--AAGACCGG---A-TCAAACAGAGTT-A
* * * * * * * * * * * ** * *
13170748 TTC-CCAGTCTAAGATCAG-ACCAAACTGAGGGTTGCGGTAGCAGGATAGA-CAGC-ACAT--AG
1 --CGGCAG--GAGGATCAGCAGCACAC-AAAGG--G-GG-ACCCGAATCGATCCCCGACTTGCAC
**** * ** * * * * * * * * *
13170807 AGGGGGACCCGACTGATCCCCGACT-TGCGCATCTCAC-CAC-TTTGGCTGGCTAAGCGCTCGCA
57 ATCCCG-CCC--CT-CTGGCCAACTGAGCGC-CCGCACGCTCGTTTCG-TGGGT-TG-ACT---A
* * * * * * **
13170869 CGCTCGTTTCGTGGGTTGACTGAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
111 AG-GC-ATAC-AGAGTT-A---ATTC---------------CCAGTCTAAGCATACGAAGTTCAT
* * *** * * *
13170934 TCCCAATCTAATATCGGATTGGACCGAGGGTTGCGCCAGCACATGCTGTGCTCGAGCATGTGCTG
154 TCCCAATCTAACATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
** * * ** * * * *
13170999 GTGCCACATTTTTCTTCGTCGGGGCATAATCGTTGGAGAACCTGATCGACGGCATTGGGGTTCGG
219 GTGCCACATTTTTCTTCGTCGGGGCACCAGCATCAGAGAACCTGACCGGCAGCATTGGGGTTCTG
* * *
13171064 GCGATCGAGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTT
284 GTGATCG-GGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTT
*
13171129 ATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
346 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
13171194 TTACAGGTTTGCTGCCAGTAGCCA-TAAAGTGTTTGAAATGTGGACACTTTTTTCAAATGGTCAC
411 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
13171258 AAAATCTTGTACACTTCGCA-TTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGA
476 AAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-ACAGGGA
* * ** * * * * * *
13171322 TCATGTCTACCAAGTTTGGAGTGAAAACTTC-TTTCGAAAAAATTTTGAAAAATCCCGAACCGCA
539 TCACGTCTACCAAGTTTGGGGCCAAAA-ATCGTTCCAAAAAAATTTTTAAAAATCTCGAACCGTA
* * *
13171386 AAAAG-TTTAGAAAATCATGAAAAATAGAAAACGAGTCATTTTGCCATGAAACTTCACGTGAAGG
603 AAAAGTTTTA-AAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
13171450 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTG-GTTGGCATGCAGAAATATGAAG
667 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG-GCATTGACATGCAGAAATATGAAG
* * *
13171514 ATGTGCGTAAACCCACCTATTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAAC
731 ATGTGCCTAAACCCACC--TCA-CCTA-CGAT-C-CGGCTTGCGCA------CT-AC--G-CAA-
* *** * ** * * * *
13171579 GTATTGCCCGCCCGCCCACCCGTCAGCTCGTTTTGTC-AGTTGGCTTAGGCATACGGAGTTCATT
779 G--TTG-TCGATTGCGCA--CG--A----G-TTCATCAAG-T---ATAAG-A-CCGGA--TCA-A
* *
13171643 CCTAGTCGAAGAT-
823 AC-A---G-AGTTA
* * * * * * * *
13171656 CGGACCGGACCGAGGGT-TGCGACCGTAGGATTGGCAGCACGCGAGAGGGACCCG-ACCCATCCC
1 CGG--C--A-GGAGGATCAGC-AGC-----A----CA-CA---AAGGGGGACCCGAATCGATCCC
* * *** * * * *
13171719 CGACTTGCGCATCCCGTCCCTCTGGCTGGCTGAGCGCTCGTACGTTCGTTTCGTGGGTTGACTTA
47 CGACTTGCACATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTAA
* *
13171784 GGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---------------AC--C-G----GA
112 GGCATACAGAGTTAATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAACATCAGACCAGA
* * ** ** **
13171823 CTGATGGTTATGGCAGCACATGCTTCGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGG
177 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
* * * **
13171888 GTACCATCGTCAGAGCATCGTCGGAGAACCTGACCGAG-GGCATTGGGGTTCCGACGATCGGGGG
242 G---CA-C--C--AGCA---TCAGAGAACCTGACCG-GCAGCATTGGGGTTCTGGTGATC-GGGG
** * * *
13171952 GGCCGAGGGGGTGTGCGCATGTGATGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGG-CCCC
294 GGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCC
*
13172016 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGC
358 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
13172081 TACCAATAGGCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
423 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * * *
13172146 AGTTAGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTGCCAA
488 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-ACAGGGATCACGTCTACCAA
* * * * * * *
13172211 GTTTGGGGCCAAAACTCATTCCAAAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA
552 GTTTGGGGCCAAAAATCGTTCCAAAAAAATTTTTAAAAATCTCGAACCGTAAAAAGTTTTAAAAA
* ** *
13172276 TCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTG
617 TCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * *
13172341 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCAC
682 TATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * ** ** * ** * *
13172406 CTACCACTTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGAGCCCACCCGCCC
747 CT--CACCTA-CGAT-C-CGGCTTGCGCA---C-T-ACGCAAGTTGTCG-ATTGCGCA--CG--A
* ** * * * *
13172471 GTCCCCCCACCCGT-TTA-ATCGGATGGCTTAGGCATACGGAGTTCA
797 GT-TCATCA--AGTATAAGACCGGAT--C--A---A-ACAGAGTT-A
* * * * ** * * * * * ** * *
13172516 TTC-TCAGTCTAAGATCAG-AGCAAACTGAGGGTTGCAGCAGCA-GGATTGGCAGCAC--GCAGA
1 --CGGCAG--GAGGATCAGCAGCACACAAAGGG--GGACCCGAATCGA-TCCCCG-ACTTGCACA
** ** * * ** * * * * * ** *
13172576 --GGGGGCCTC-GGTCGATCCTCG-GCTTGCGCATCCCGCCCCTCTGGCCGGTTG----AGCGCC
58 TCCCGCCCCTCTGG-CCA-ACT-GAGC--GC-CCGCACGCTCGTTTCGTGGGTTGACTAAG-GCA
* * **** * * * * *
13172633 CACACGCTCGTT--TTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
116 TACA-G--AGTTAATTCCCAG-T--C-TAAGCATACGAAGTTCATTCCCAATCTAACATCAGACC
* * * * * *
13172696 AGACTGAGGGTTGTAGTC-GCACATGCTGCG-TCGGCCATGTGCTGGTTCCACATTTTTCTTCGT
174 AGACCGAGGGTTG-CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT
* *** * * * **
13172759 CGGGGCACCATCACCGGAGCACGCCAGAGAACCTGAATAGCGGCATAGGGGTTCCGACGATCGGG
238 CGGGG------CACC--AGCA--TCAGAGAACCTGACCGGCAGCATTGGGGTTCTGGTGATC-GG
** * * **
13172824 GGGGTTGGGGGGTGTGCGCACATGATGCGCGATGGGTGCTGGTACTTGGAACTTATATTGGCCCC
292 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCC
* *
13172889 CTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
357 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
13172954 CTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAAT-GTCACAAAATCTTGTA
422 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
13173018 CACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCGCGTCTACCA
487 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-ACAGGGATCACGTCTACCA
* * *
13173083 AGTTTGGGGCCAAAACA-CCTT--AAGAAAATATTTTAAAAAATC-CTGAACCGTAAAAAGTTTC
551 AGTTTGGGGCCAAAA-ATCGTTCCAA-AAAA-ATTTTTAAAAATCTC-GAACCGTAAAAAGTTTT
* *
13173144 AAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
612 AAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
13173209 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
677 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAA
13173274 CCCACCT
742 CCCACCT
13173281 ACCACCCTAT
Statistics
Matches: 3390, Mismatches: 582, Indels: 633
0.74 0.13 0.14
Matches are distributed among these distances:
843 2 0.00
844 12 0.00
845 8 0.00
846 13 0.00
847 8 0.00
848 17 0.01
849 1 0.00
850 3 0.00
851 13 0.00
852 271 0.08
853 6 0.00
854 142 0.04
855 27 0.01
856 7 0.00
857 6 0.00
858 11 0.00
859 4 0.00
860 5 0.00
861 4 0.00
862 37 0.01
863 184 0.05
864 8 0.00
865 5 0.00
866 64 0.02
867 16 0.00
868 1 0.00
869 4 0.00
870 2 0.00
871 6 0.00
872 16 0.00
873 310 0.09
874 162 0.05
875 150 0.04
876 355 0.10
877 60 0.02
878 14 0.00
879 2 0.00
882 1 0.00
883 1 0.00
884 3 0.00
885 5 0.00
886 7 0.00
887 5 0.00
888 4 0.00
889 6 0.00
890 177 0.05
891 68 0.02
892 231 0.07
893 239 0.07
894 2 0.00
895 4 0.00
896 10 0.00
897 2 0.00
898 8 0.00
899 1 0.00
900 10 0.00
901 38 0.01
902 10 0.00
903 32 0.01
904 325 0.10
905 164 0.05
906 10 0.00
907 2 0.00
909 3 0.00
910 6 0.00
911 8 0.00
912 2 0.00
913 1 0.00
914 1 0.00
916 1 0.00
917 2 0.00
918 12 0.00
919 16 0.00
920 10 0.00
921 4 0.00
922 2 0.00
923 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (831 bp):
CGGCAGGAGGATCAGCAGCACACAAAGGGGGACCCGAATCGATCCCCGACTTGCACATCCCGCCC
CTCTGGCCAACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCATACAGAGTTAATTCC
CAGTCTAAGCATACGAAGTTCATTCCCAATCTAACATCAGACCAGACCGAGGGTTGCGGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAGCATCAGAGAACC
TGACCGGCAGCATTGGGGTTCTGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAAACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCGTTCCAAAAAAATTTTT
AAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTCACCTACGATCCGGCTTGCGCACTACGCAAGT
TGTCGATTGCGCACGAGTTCATCAAGTATAAGACCGGATCAAACAGAGTTA
Found at i:13169136 original size:26 final size:26
Alignment explanation
Indices: 13169094--13169151 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
13169084 TGTGGGTTGA
*
13169094 CTAAGGCATACAGAGTTAATTCCTAGT
1 CTAA-GCATACAGAGTTAATTCCCAGT
*
13169121 CTAAGCATAC-GAAGTTCATTCCCAGT
1 CTAAGCATACAG-AGTTAATTCCCAGT
13169147 CTAAG
1 CTAAG
13169152 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 1 0.04
26 23 0.82
27 4 0.14
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (26 bp):
CTAAGCATACAGAGTTAATTCCCAGT
Found at i:13170930 original size:26 final size:26
Alignment explanation
Indices: 13170893--13170944 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13170883 GTTGACTGAG
*
13170893 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13170919 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
13170945 TATCGGATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13172286 original size:876 final size:872
Alignment explanation
Indices: 13168264--13173417 Score: 5800
Period size: 904 Copynumber: 5.9 Consensus size: 872
13168254 CAGTCTAAGG
* * * * * * *
13168264 ATACGAAGTTCATTCCCAATCTAACATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCTGCGCT
* * * *
13168329 TGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTAGCATCGCCGGAGCATC-ACTGGAGAA
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG-ACCATC-CCGGAGCATCGTC-GGAGAA
* * *
13168393 CCTGACCG-GCAGCATTGGGGTTCTGGTGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTGC
128 CCTGACCGAGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
13168456 GATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
13168521 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
13168586 GGGACACTTTTTTAAAATTGTTAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
13168651 ACATGCCAACAAAAATACGAGGATAACGTCTACCAA-TATTCGGGCCAAAACTCCT-GAAAAAAT
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT-TTGGGGCCAAAACTCTTCAAAAAAAT
* * * *
13168714 TTTAAGAAGTCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
452 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
13168779 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
13168844 GGCACACAGAAATATCAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCA
582 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
13168909 -CCCG------T--CCG-C----T------------------C-G-T--TTT-GTCGGTTGGCTT
647 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTC-GTTGGCTT
* * * * * **
13168937 AGGCATACGGAGTTCATTCCTAGTGTAAGATCGGATCAAACTGAGAGTTACGGTAGTAGGATCGG
711 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAACTGAGGGTTGCGACAGTAGGATCGG
* * * *
13169002 CAGCACACAGAGGGGGACCTGAATCGATCCCCGACTTGCACATCCCGCCCCTCTGGCTGGCTGAG
776 CAGCACGC-GAGGGGGACCCG-ACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAG
* * *
13169067 TGCCCGCATGCTCGTTTTGTGGGTTGACTAAGGCATACAGAGTTAATTCCTAGTCTAAGC
839 CGCCCGCACGCTCGTTTCGTGGG-T---T---G---AC---------T--TAG-----GC
* * * *
13169127 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCTGCGCT
*
13169192 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG--CA---C----CATCGTCAGAGAACCT
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGACCATCCCGGAGCATCGTCGGAGAACCT
* * * *
13169248 GATCG-GTGGCATTGGGGTTCTGGTGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
131 GACCGAGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
13169311 GGGTTCTGGTATTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTTGAGAACTCACACCC
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
**
13169376 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCAAAATGGGG
261 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
13169441 ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTGTTTTGTGCA
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
13169506 TGCCAACAAATATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCGTTCAAAAAAATTT
391 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-C-TTCAAAAAAATTT
* * * ** * *
13169571 GAAAAAATCTCGAA-C-CATAAAATTTTTGAAAATCATGAAAAATAGAAAACAAGACGTCTTGCC
454 TAAAAAATCCCGAACCGCA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
13169634 ATGAAACTTCATGTGATGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * * *
13169699 GAATGTAGAAATATGAAGATGTGTCTAAACCCACCTTA-CACCCTATCGATCCATGGCTTACGCA
583 GCACGCAGAAATATGAAGATGTGCCTAAACCCACC-TACCACCCTATCGATCCACGGCTTGCGCA
* * ** * ** * * * * *
13169763 TCCTGTTTCTCTGATCGACGTAGTGCCTGCCCGGTCGCCCGCCCGCTCATTTCGTCGATTAGTTT
647 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCG-TTGGCTT
* * * ** * *
13169828 AGGCATACAGAGTTGATTCCCAGTCTAAGATCAGACTGAATTGAGGGTTGC-AGTAGTAGGATCG
711 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAACTGAGGGTTGCGA-CAGTAGGATCG
* * * * * * * *
13169892 ACAGCACGCAGAGGGGGACCTGGCCGATCCCTGGCTTGCGCATCTCGCCCATCTGGCTGGTTGAG
775 GCAGCACGC-GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAG
* * *
13169957 CACCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCC
839 CGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA-G--G--------C
* *
13170008 ATTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTGGCTGCACA
1 A---T-A-C----GGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACA
* * ** *
13170073 TGTTGTGCTCGGGCATGTGCTGGTGCCGTATTTTTCCTCGTCGGGGCACCATCACCGGAGCATCG
57 TGCTGCGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG-ACCATC-CCGGAGCATCG
* * * * *
13170138 CCGGAGAACCTGACCG-CCAGCATTGGGGTTTCGGGGATCGGGGGGGCCGGGGTGGGGTGTGCGC
120 TCGGAGAACCTGACCGAGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GG-GGGGTGTGCGC
* *
13170202 ACATGATGTGCAATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
182 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
13170267 GAGAACTCACACCCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGTTGCCAGTGGCCACTAAAG
247 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * *
13170332 TGCCTGAAATGGGGACACTTCTTTCAAATGGTCAC-AAATCTTATACACTTCGATTTTTTAGCTG
312 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
13170396 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTCC
377 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-C
** * *
13170461 TTCTGAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
441 TTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
13170526 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATA
506 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
**
13170591 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
571 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * *
13170656 CGACTTGTGCATCCTGTTTCTCTGGCCGACGTAGAGCCCGCTCGCCCGCCCGCCCA-CTCGTTTC
636 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCG-CCAGCTCGTTTC
* *
13170720 GTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGG
700 GTCG-TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAACTGAGGGTTGCGA
* * * * ** * * * * *
13170785 TAGCAGGATAGACAGCACATAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCTCACCACTTT
764 CAGTAGGATCGGCAGCAC-GCGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCT
* * *
13170850 GGCTGGCTAAGCGCTCGCACGCTCGTTTCGTGGGTTGACTGAGGC
828 GGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
13170895 ATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAATATCGGATTGGACCG
1 ATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G----------A-C------C--A---GACTG
* * * *
13170960 AGGGTTGCGCCAGCACATGCTGTGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG--
40 AGGGTTGTGGCAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGAC
* * * *
13171023 CAT-----A--ATCGTTGGAGAACCTGATCGA-CGGCATTGGGGTTCGGGCGATCGAGGGGGCCG
105 CATCCCGGAGCATCGTCGGAGAACCTGACCGAGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-
* *
13171080 AGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCGTATC
169 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
13171145 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
233 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
13171210 AGTAGCCA-TAAAGTGTTTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
298 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
13171274 CGCA-TTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
363 CG-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* ** * *
13171338 TGGAGTGAAAACTTCTTTCGAAAAAATTTTGAAAAATCCCGAACCGCAAAAAGTTT-AGAAAATC
427 TGGGGCCAAAAC-TC-TTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA-AAAATC
* *
13171402 ATGAAAAATAGAAAACGAGTCATTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
489 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
13171467 TGAATTTACAAGCCATAAAAATGTG-GTTGGCATGCAGAAATATGAAGATGTGCGTAAACCCACC
554 TGAATTTACAAGCCATAAAAATG-GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
** * *
13171531 TATTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTATTGCCCGCCCGCCC
618 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * * *
13171596 ACCCGTCAGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCGAAGATCGGAC
683 ACCCGCCAGCTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
** * * * * *
13171661 CGGACCGAGGGTTGCGACCGTAGGATTGGCAGCACGCGAGAGGGACCCGACCCATCCCCGACTTG
747 CAAACTGAGGGTTGCGACAGTAGGATCGGCAGCACGCGAGGGGGACCCGACCGATCCCCGACTTG
* * * *
13171726 CGCATCCCGTCCCTCTGGCTGGCTGAGCGCTCGTACGTTCGTTTCGTGGGTTGACTTAGGC
812 CGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
13171787 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGATGGTTATGGCAGCACATGCTTCGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCTGCGCT
** * *
13171852 CGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGTACCATCGTCAGAGCATCGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG-ACCATC-CCGGAGCATCGTCGGAGAAC
* ** *
13171917 CTGACCGAG-GGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCATGTGATGTGT
129 CTGACCGAGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGC
*
13171981 GATGGCTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
13172045 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAATAGGCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
13172110 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTAGAGTTTTTAGTTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
13172175 GCATGCCAACAAAAATATAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCATTCCAAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TT-CAAAAAAA
* ** * *
13172240 ATTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
451 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
13172305 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
13172370 TGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCA-CTTATCGATCCACGGCTTGCGC
581 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * ** *
13172434 ATCCCATCTCTCTGGCCGGCGTAGAGCCCACCCGCCCGTCCCCCCA-CCCGTTTAATCGGATGGC
646 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-ACCCGCCAGCTCGTTTCGTC-GTTGGC
* *
13172498 TTAGGCATACGGAGTTCATT-CTCAGTCTAAGATCAGAGCAAACTGAGGGTTGC-AGCAGCAGGA
709 TTAGGCATACGGAGTTCATTCCT-AGTCTAAGATCAGACCAAACTGAGGGTTGCGA-CAGTAGGA
* ** * * * *
13172561 TTGGCAGCACGCAGAGGGGG-CCTCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGT
772 TCGGCAGCACGC-GAGGGGGACC-CGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGC
* *
13172625 TGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGC
835 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
*
13172663 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTAGTC-GCACATGCTGCG-
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGT-GGCAGCACATGCTGCGC
* * * *
13172726 TCGGCCATGTGCTGGTTCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCA-CGCCAGAGAA
65 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG-ACCATC-CCGGAGCATCGTCGGAGAA
** * * ** *
13172790 CCTGA-ATAGCGGCATAGGGGTTCCGACGATCGGGGGGGTTGGGGGGTGTGCGCACATGATGCGC
128 CCTGACCGAGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
** *
13172854 GATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13172919 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
13172984 GGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTAT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
13173048 GCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACACCTT-AAGAAAAT
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCTTCAA-AAAA-
* * *
13173112 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTT
450 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
13173177 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
13173242 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
580 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
13173307 CATCCCGTCTCTCTGGCCAACGTAGTGACCGCCCG------C-CCA-CTCGTTTCGTCGGTTGAC
645 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTC-GTTGGC
** * *
13173364 TTAGGCAGGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCG
709 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAACTGAGGGTTGCG
13173418 GTAGCACATG
Statistics
Matches: 3689, Mismatches: 446, Indels: 308
0.83 0.10 0.07
Matches are distributed among these distances:
851 8 0.00
852 282 0.08
853 4 0.00
854 154 0.04
855 23 0.01
856 1 0.00
860 2 0.00
861 1 0.00
863 97 0.03
864 1 0.00
866 120 0.03
867 2 0.00
868 1 0.00
869 3 0.00
871 3 0.00
872 6 0.00
873 304 0.08
874 202 0.05
875 262 0.07
876 461 0.12
877 49 0.01
878 21 0.01
879 2 0.00
880 4 0.00
881 2 0.00
882 1 0.00
883 1 0.00
884 2 0.00
885 1 0.00
886 3 0.00
887 3 0.00
888 2 0.00
889 1 0.00
890 147 0.04
891 117 0.03
892 320 0.09
893 346 0.09
894 2 0.00
895 2 0.00
897 2 0.00
898 1 0.00
899 1 0.00
901 39 0.01
902 8 0.00
903 27 0.01
904 483 0.13
905 165 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (872 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCTGCGCT
CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGACCATCCCGGAGCATCGTCGGAGAACCT
GACCGAGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTCAAAAAAATTTTA
AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCGTTGGCTTAGGCA
TACGGAGTTCATTCCTAGTCTAAGATCAGACCAAACTGAGGGTTGCGACAGTAGGATCGGCAGCA
CGCGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGC
Found at i:13174233 original size:25 final size:26
Alignment explanation
Indices: 13174204--13174255 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13174194 GTTGACTTAG
13174204 GCATAC-GAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
13174229 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13174255 G
1 G
13174256 ATTGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13176907 original size:26 final size:26
Alignment explanation
Indices: 13176871--13176923 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13176861 GTTGACTTAG
*
13176871 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
13176897 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13176923 G
1 G
13176924 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13177929 original size:25 final size:25
Alignment explanation
Indices: 13177895--13177950 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
13177885 TTTTTCTTCG
*
13177895 TCGGGGCACCATCGCCGGAGCATCA
1 TCGGAGCACCATCGCCGGAGCATCA
*
13177920 TCGGAGCACCATCGCCGGAGCATCG
1 TCGGAGCACCATCGCCGGAGCATCA
13177945 TCGGAG
1 TCGGAG
13177951 AACCTGACCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.20, C:0.34, G:0.34, T:0.12
Consensus pattern (25 bp):
TCGGAGCACCATCGCCGGAGCATCA
Found at i:13177938 original size:14 final size:14
Alignment explanation
Indices: 13177900--13177941 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
13177890 CTTCGTCGGG
13177900 GCACCATCGCCGGA
1 GCACCATCGCCGGA
*
13177914 GCATCAT---CGGA
1 GCACCATCGCCGGA
13177925 GCACCATCGCCGGA
1 GCACCATCGCCGGA
13177939 GCA
1 GCA
13177942 TCGTCGGAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
11 10 0.43
14 13 0.57
ACGTcount: A:0.24, C:0.38, G:0.29, T:0.10
Consensus pattern (14 bp):
GCACCATCGCCGGA
Found at i:13179632 original size:26 final size:26
Alignment explanation
Indices: 13179595--13179647 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13179585 GTTGACTTAG
*
13179595 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
13179621 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
13179647 G
1 G
13179648 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:13183159 original size:26 final size:26
Alignment explanation
Indices: 13183129--13183181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13183119 GTTGACTTTG
* *
13183129 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13183155 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13183181 G
1 G
13183182 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13183389 original size:865 final size:868
Alignment explanation
Indices: 13180630--13184053 Score: 4072
Period size: 866 Copynumber: 3.9 Consensus size: 868
13180620 ACCGACAGCA
* * * * * *
13180630 TTGGAGTTCCGGCGATTGGGGGGGCCGGGGGTGTGTGTGCACATGATGTGCGATGGGTGCTGGTA
1 TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
13180695 CTTGGCCCTTAAATTGGCCCCCCATCCCTCATCACACCTTGAGAACTCACACCCCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
13180760 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTCTGAAATGGGGACACTTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTC
*
13180825 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
196 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
*
13180890 ATACAAGGATCACGTCTACGAAGTTTGGGG-CAAAACTCCTTCCGAAAAAA-TTTAAAAAATCCT
261 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT
* * * * * *
13180953 CG-ACTTGCAAAAAGTTTCTAAAATCGTGAGAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
326 CGAAC-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
13181017 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TGGCATGCAGAA
390 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * *
13181081 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTC
455 ATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * *
13181146 TGGCTGGCGTAGTGCCCGCCCGCCCGCCCG-CACACTCGTTTCGTTGGTTGGCTTAGGCATACGG
520 TGGCCGACGGAGTGCCCGCCCGACCACCCGCCA-ACTCATTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * *
13181210 AGTTCATTCCCAGTCTAAAATTAGACCAGACCGAGGGTTGCGGCAGCATGATCGGTAGCATGTAG
584 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAA
* * * *
13181275 AGGGGGACCCGATCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGC
649 AGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGC
* * * *
13181340 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCACACGGAATTCATTCC
714 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCC
* * * * **** *
13181405 CAGTCTAA-ATCAGACCGGATTGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTG
779 CAATCTAAGATCGGACCGGACTGAGGGCTGCAACAGCACATGCCGGGCTCGGGCATGTG-T--TG
* *
13181469 CCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATTGCCGGAGAACCTGACCGACGG
841 ---CA-------TCGTC---G-A-CA------GA--A---CC--TG-ACC-G-GCGAC-G
* * *
13181529 CATTGGGGTTTCGATGATCGAGGGGGCCGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGG
1 --TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
13181594 TTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACACCCCCTTAAAGA
64 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
13181659 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTT
129 GCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGACACTTTTT
* *
13181724 TCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
194 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
* * * *
13181789 AAATACAAGGATCATGTCTACGAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATC
259 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* *
13181854 C-CGACCCGTAAAAAGTTTCAAAAATCGTGAGAAATAGAAAACGAGTCATCTTGCCATGAAACTT
324 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
*
13181918 CACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
389 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
13181983 AATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTAGCGCATCCCGACTCT
454 AATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
13182048 CTGGCCGGCGTAGTGCCCGCCCG----CCCGCCCATTCATTTCGTCGGTTGGTTTAGGCATACGG
519 CTGGCCGACGGAGTGCCCGCCCGACCACCCGCCAACTCATTTCGTCGGTTGGCTTAGGCATACGG
* * * * * *
13182109 AGTTCATTCCCTA-TCTAAGATTAGACCAGACTGAGGGTTGCTGCATCAGGATCGGCAACACGCA
584 AGTTCATTCCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCA
* * * * * *
13182173 GAGGGGGATCCGATCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCCAACTGAGCACCCGTACG
648 AAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACG
* *
13182238 CTCGTTTCGA-GGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG-AT-CAGA--CCA-G
713 CTCGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATT
* * * * * * * * * * *** **** ** **** *
13182297 ACTAGACCGAGGGTTGCAGCCGCACATGCTGGGCTGGGGCATGTGTTGGTGCC-GTATTTTTCTT
777 CCCA-ATCTAAGATCGGA-CCGGAC-TG-AGGGCT---GCAACAGCACATGCCGGGCTCGGGCAT
** * * ** * *
13182361 CGTCGGGGCACCATC-ACCAGAGAACCTGACTTGCGGCA
835 -GT-GTTGCATCGTCGA-C--AGAACCTGACCGGCGACG
* * ** *
13182399 TTGGGGTTCCGACGATCGGGGGGGCC-CGGGGGTGCACGCACATGATGTGTGATGGGTGCTGGTA
1 TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
** *
13182463 CTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCTTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
13182527 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGCCTGGAATAGGGACACTTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTC
* *
13182592 AAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAAAAAAA
196 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
* *
13182656 ATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT
261 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT
* * *
13182721 -GAACCGTAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCTTCTTGCCATGAAACTTCA
326 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
* * *
13182785 CGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGCATTGGCACGTAGAAA
391 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
13182850 TATGAAGATGTGACTAAACCCACCTACCACCCCATCGATCCATGGCTTGCACATCCCGTCTCTCT
456 TATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * **
13182915 GGCCGATGGAGTGCCCGCCCGTACC-CCCGCCAACTCATTTCCTTGGTTGGCTTAGCCATATAGA
521 GGCCGACGGAGTGCCCGCCCG-ACCACCCGCCAACTCATTTCGTCGGTTGGCTTAGGCATACGGA
* * *** *
13182979 GTTCATTCCTAGTCTAAGATCAGACCAGACCGGGGGTTGCTATAGCAAGATCGGTAGCACGCAAA
585 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAAA
* * ** *** *
13183044 GGGGGACCCGGCCGATCCCTGGCTTGCACATCCCGTAACTCTGGCCGGCTGAGCACCCGCACGCT
650 GGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCT
* * *
13183109 TGTTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
715 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCC
*
13183174 AATCTAAGATCGGATCGGACTGAGGGCTGCAACAGCACATGCCGGGCTCGGGCATGTGTTG-ATC
780 AATCTAAGATCGGACCGGACTGAGGGCTGCAACAGCACATGCCGGGCTCGGGCATGTGTTGCATC
13183238 GTCGA-AGAACCTGACCGGCGACG
845 GTCGACAGAACCTGACCGGCGACG
13183261 TTGGGGTTCCGACGATCGAGGGGGCCGGCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 TTGGGGTTCCGACGATCGAGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
13183326 GCTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
13183391 CATTTGAGATTTTACAGTTTTGCT-ACAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
130 CATTTGAGATTTTACAGGTTTGCTGCCAA-TAGCCATTAAAGTGTCTGAAATAGGGACACTTTTT
* *
13183455 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATCTTTTTATGCATGCCAACAA
194 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
* * * * * *
13183520 AAATACAAGGATCATGTCTACCATGTTTAGGGCGAAAACCCCTTCCGAAAAAATTTTTAAAAAT-
259 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * *
13183584 CTCGAACCGTAAAAAGTTTCAAAATTTGTGAAAAATATAAAACGAGTCATCTTGCCATGAAACTT
324 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
* * *
13183649 CACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGTAGA
389 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* ** *
13183714 AATATGAAGATGTGCCTAAGCCCACCTACCACCTTATCGATCCACGGCTTGTGCATCCCGTCTCT
454 AATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * ** * *
13183779 CTGGCC-AGCGTAGTACCCACCC-ACTCACCCGCCCGCTCATTTCATCAGTTGGCTTAGGCATAC
519 CTGGCCGA-CGGAGTGCCCGCCCGAC-CACCCGCCAACTCATTTCGTCGGTTGGCTTAGGCATAC
* * * * *
13183842 GGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAAGATCAGCAGCATGC
582 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGC
** * * * * *
13183907 AAAATGGGACCCGGCCGATCCCCGACTTGTGCATCCCACCCCTCTTG-CAG-TTAGCACCCGCAC
647 AAAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCAC
* * * * ** *
13183970 GCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTAATTCCCGGTCTAAGCATACGGAGTTCATT
712 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATT
* *
13184035 -CCAGTCTAAGATCAGACCG
777 CCCAATCTAAGATCGGACCG
13184054 AGGGTTACGG
Statistics
Matches: 2174, Mismatches: 307, Indels: 122
0.84 0.12 0.05
Matches are distributed among these distances:
862 39 0.02
863 16 0.01
864 154 0.07
865 394 0.18
866 501 0.23
867 90 0.04
868 29 0.01
869 177 0.08
870 7 0.00
871 9 0.00
872 4 0.00
873 11 0.01
874 3 0.00
876 2 0.00
879 1 0.00
881 2 0.00
885 3 0.00
887 1 0.00
890 3 0.00
894 2 0.00
895 4 0.00
896 2 0.00
897 9 0.00
898 3 0.00
899 193 0.09
900 3 0.00
901 273 0.13
902 132 0.06
903 107 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (868 bp):
TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT
CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGGAGTGCCCGCCCGACCACCCGCCAACTCATTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAAAG
GGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTC
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCA
ATCTAAGATCGGACCGGACTGAGGGCTGCAACAGCACATGCCGGGCTCGGGCATGTGTTGCATCG
TCGACAGAACCTGACCGGCGACG
Found at i:13184029 original size:26 final size:25
Alignment explanation
Indices: 13183993--13184044 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
13183983 GTTGAATTAG
*
13183993 GCATACGGAGTTAATTCCCGGTCTAA
1 GCATACGGAGTTAATT-CCAGTCTAA
*
13184019 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTAATTCCAGTCTAA
13184044 G
1 G
13184045 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTAATTCCAGTCTAA
Found at i:13184333 original size:26 final size:26
Alignment explanation
Indices: 13184304--13184356 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13184294 GTTGACTTAG
13184304 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13184330 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13184356 G
1 G
13184357 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13185256 original size:25 final size:28
Alignment explanation
Indices: 13185209--13185262 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 28
13185199 TTTGACTTAG
13185209 GCATACGGAGGTTTCATTCCCAGT-TAA
1 GCATACGGAGGTTTCATTCCCAGTCTAA
13185236 GCATACGGA-G-TTCA-TCTCCAGTCTAA
1 GCATACGGAGGTTTCATTC-CCAGTCTAA
13185262 G
1 G
13185263 ATCAGAACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
24 2 0.08
25 9 0.36
26 5 0.20
27 9 0.36
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (28 bp):
GCATACGGAGGTTTCATTCCCAGTCTAA
Found at i:13186562 original size:899 final size:893
Alignment explanation
Indices: 13184204--13188859 Score: 4999
Period size: 865 Copynumber: 5.3 Consensus size: 893
13184194 ACGAGGGTTA
* * * * *
13184204 CGGTAACACGCAGAAGGGGACCCGATCGATCCCCAGCTTGCTCATCCCGCCCCTCTTAGCCGG-T
1 CGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCT-TTGGCCGGCT
* *
13184268 CGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
65 -GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
13184333 TACGGAGTTCATTCCTAGTCTAAGATCGGACCAGAACGAGGGTTGTGACAGCACATGCTGGGCTC
129 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
13184398 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGGTCGGAGCATCCGCGAGAACC
194 GGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-G-C-TAGCA-CAG-GAGAA-C
* * * * * *
13184463 CTGACCGAC-AGCATT-GGTTTTTGGCGATCCGGGTGGCCAGGGGGGGTGTGCACAAATGAATGT
253 CTGACCGACGA-CATTGGGGTTTCGACGAT-CGGGGGGCC--GGGGGGTGTGCGCACATG-ATGT
* * *
13184526 GCGATGGGCGCTGGGTACTTGGCCCTTATATTGG-CCCCTAT-CCTCATCAAACCTTGAAAACTC
313 GCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
13184589 ACACCCCTTAAAGTGCATTTGAGATTTTACAAGTTTGCTGCCAGTAACCATT-AAGTGTCTGAAA
377 ACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13184653 CGGGGACACTTTTTTCAAATGGTCCACAAAAATC-TGTACACTTCGA-TTTTTAGCCT--ATTTT
442 TGGGGACACTTTTTTCAAATGGT-CAC-AAAATCTTGTACACTTCGAGTTTTTAG-CTGAATTTT
*
13184714 TTTGTGCATGCC-ACAAAATATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
504 TTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* *
13184778 AAAAAATTTTAAAAAATCCTGACCCACAAAAAG-TTCAAAAATCGTGAAAAATAG-AAACGAGTC
568 AAAAAATTTTAAAAAATCCCGA-CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * **
13184841 GTCTTG-CATGAAACTTTACGTG-AGGCTTAAGGGACCATTGTATG-ATTTTGAAGCCATAAAAA
632 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
13184903 TAGACATTGG-AA-TGCAGAAAATGAAGATGTGCGTAAACCCACCTACCACCCTATCAATCCACG
697 T-GGCATTGGCAACTG-A-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** * * * ** *
13184966 ACTTGCGCAATACCCGTCTCTCTGGCCGGCACCAAGTGCCAGGCTCGCGCATCTG-CAGCTCGTT
759 GCTTGCGC-AT-CCCGTCTCTCTGGCCGG--CGTAGTGCC-CGCCCGCCCGCCCGCCA-CTCGTT
*
13185030 TCCGTCGGTTGGCTTAGGCATACGGGGGGGGAGTTCATTCCCCAAGTCTAAGATT-GAACAGA-C
818 T-CGTCGGTTGGCTTAGGCATAC------GGAGTTCATT-CCC-AGTCTAAGATTAGACCAGACC
* *
13185093 GAGGGTTGCGGTAGTAGGAT
874 GAGGGTTGCGGCAGCAGGAT
* * * * * ** * *
13185113 CGGTA-CATGTAGTGGGGGACCCGATCGAT-CCCGGC-TGCACGT-CCTTCCCTCTGGCC-GTTG
1 CGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTG
* * **
13185173 AGCACCTGCACGCTCGTTCCAACGGGTTTGACTTAGGCATACGGAGGTTTCATTCCCAGT-TAAG
66 AGCACCCGCACGCTCGTTTC-GTGGG-TTGACTTAGGCATACGGA-G-TTCATTCCCAGTCTAAG
* *
13185237 CATACGGAGTTCA-TCTCCAGTCTAAGATCAGAACC-GACCGAGGGTTACGGCAGCAACATGATG
127 CATACGGAGTTCATTC-CCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGC-ACATGCTG
* * * *
13185300 GGCTCGAGCGTGTGTTTGGTGCCTGCATTTTTC-TCGTCGGAGGCA--A-CGC-ATCACCGGAGA
189 GGCTCGGGCATGTG-TTGGTGCC-GCATTTTTCTTCGTCGG-GGCACCATCGCTAGCACAGGAGA
* * ** * * * *
13185360 ACTTTGACCGACG-GATTGTAGTTTCCGGGCGATTGGGGGGGCC-GGGTGTGTTGTTG-ACATGA
251 AC-CTGACCGACGACATTGGGGTTT-C-GACGA-TCGGGGGGCCGGGGGGTG-TG-CGCACATGA
* * *
13185422 TGTACGATGGGTGCT-GTACTTTGGCCCTTATATTGG-TCCC-AT-CCTCATCAACACCTTGAGA
310 TGTGCGATGGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAA-ACCTCGAGA
* * *
13185483 ACTAACACCCCCGTTAAAG-GCAATCTGAGATTTTACA-G-TTGCTGCCAGTAAGACATTAAAGT
373 ACTCACA-CCCC-TTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGT
*
13185545 GTCTGAAATGGGGACGACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
434 GTCTGAAATGGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
13185610 AATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACTCC
498 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* *
13185675 TTTCGAAAAAA-TTTAAAAAATCCCGACTCGCAAAAAGTTTCAAAAATCGTGAGAAATAGAAAAT
563 TTTCGAAAAAATTTTAAAAAATCCCGAC-CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* *
13185739 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCAT
627 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
13185804 AAAAATGGCATTGGCACACTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
692 AAAAATGGCATTGGCA-ACTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
13185869 ATGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCACACTCGTTTC
756 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-CACTCGTTTC
* *
13185934 GTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATTAGACCAGACCGAGGGTTGCGG
820 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGG
13185999 CAGCAGGAT
885 CAGCAGGAT
* * * *
13186008 CGGTAGCATGTAGAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCTTTGGCCGGCTG
1 CGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTG
* *
13186073 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCACA
66 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* ** * *
13186138 CGGAATTCATTCCCAGTCTAA-ATCAGACCGGATTGAGGGTTGTGGTAGCACATGCTGGGCTCGG
131 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* *
13186202 GCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACAATCGCTGGAGCATTGCAGGAGAACCTG
196 GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT--AGCA---CAGGAGAACCTG
* * *
13186267 ACCGACGACATTGGGGTTTCGATGATCAAGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGG
256 ACCGACGACATTGGGGTTTCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
13186332 GTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCT
320 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCT
* *
13186397 TAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCCGAAATAGGGACA
385 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
13186461 CTTTTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGC
450 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
13186526 CAACAAAAATACAAGGATCATGTCTACGATGTTTGGGGCCAAAAACTCC-TTCTGAAAAAATTTT
515 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTTC-GAAAAAATTTT
* * *
13186590 AAAAAATCTCG-CC-CATAAAAATTTCAAAAATCGTGAGAAATAGAAAACGAGTCATCTTGCCAT
578 AAAAAATCCCGACCGCA-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
*
13186653 GAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTGG
642 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGG
** * * *
13186718 CATTTAGAAATATGAAGATGTGGCTAAAACCCACCTACCACCCCATCGATCCACGGCTAGCGCAT
706 CAACT-GAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * **
13186783 CCCGACTCTCTGG-CGGCGTAATGCCCGCCCG-CCG--C-CCATTCATTTCGTCAATTGGCTTAG
769 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCACTCGTTTCGTCGGTTGGCTTAG
* **
13186843 GCATACGGAGGTCATTCCCTA-TCTAAGATTAGACCAGACCGAGGGTTGTTGCAGCAGGAT
834 GCATACGGAGTTCATTCCC-AGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * **
13186903 CGGCAACACGCAGAGGGGGATCCGATCAATCCCCGGCTTGTGCATCCCG-CCCTTCTGGCCGATT
1 CGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTT-TGGCCGGCT
* * *
13186967 AAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAATCTAAG-AT
65 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * *
13187031 -C--AG---------A--C------CAGACCGGACCGAGGGTTGCAGCCGCACATGCTAGGCTGG
130 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* *
13187076 GGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT--C--GC-CA-GAGAACCTGACTT
195 GGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTAGCACAGGAGAACCTGAC-C
* * * ** *
13187135 G-CGGCATTGTGGTTCCGACGATCGGGGGGGCCGGGGGGTGCACGCACATGATGTGTGATGGGTG
259 GACGACATTGGGGTTTCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
**
13187199 CTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAA
323 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAA
* * *
13187264 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGCCTGGAATGGGGACACTT
388 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
13187329 TTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAA
453 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
13187393 -AAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
518 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
** * * *
13187457 ATCCTTAACCGTAAAAAATTTCAAAAATCATGAAAAAATAGAAAACGAGTCATCTTGCCATGAAA
583 ATCC-CGACCGCAAAAAGTTTCAAAAATCGTG-AAAAATAGAAAACGAGTCATCTTGCCATGAAA
*
13187522 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGCATTGGC-AC-
646 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAACT
* * * *
13187585 GTAGAATATGAAGATGTGACTAAA-CCACCTACCACCCCATCGATCCATGGCTTGCACAT-CCGT
711 G-A-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
** * * * * *
13187648 CTCT-TGGCCGATGGAGTGCCCGCCCGCACC-CCCGCCAGCTCATTTCCTTGGTTGGCTTAGCCA
774 CTCTCTGGCCGGCGTAGTGCCCGCCCGC-CCGCCCGCCA-CTCGTTTCGTCGGTTGGCTTAGGCA
** * * ***
13187711 TATAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCTATAGCAGGAT
837 TACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGAT
** * * *** *
13187768 CGGTAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCACATCCCGTAACTCTGGCCGGCTG
1 CGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTG
* *
13187833 AGCACCCGCACGCTCGTTTCGTGGGTTGACTT-----T---G-G-T-A-TACGAGTCTAAGCATA
66 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * ** *
13187886 CGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGCTGCAACAGCACATGCCGGGCTCGG
131 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
*
13187951 GCATGTG-T--T---G-A----------TC---G-----T--C--G---A--AGAACCTGACCGG
196 GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTAGCACAGGAGAACCTGACCGA
* *
13187982 CGACGTTGGGGTTCCGACGATCGGGGGGCCGGCGGGGGTGTGCGCACATGATGTGCGATGGGTGC
261 CGACATTGGGGTTTCGACGATCGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
13188047 TGGTGCTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAA
324 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAA
* * *
13188112 AGAGCATTTGAGATTTTACAGTTTTGCTACAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
388 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
13188177 TTTTCAAATGGTCCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
453 TTTTCAAATGGT-CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * *
13188242 ACAAAAATACAAGGATCATGTCTA-CAAGTTTAGGGCGAAAAC-CCCTTCCAAAAATATTTTTAA
517 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA-ATTTTAAA
* * * *
13188305 AAATCTCGAACCGCAAAAAGTTTCAAAATTTGTGAAAAATATAAAACGAGTCATCTTGCCATGAA
581 AAATCCCG-ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* *
13188370 ACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
645 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAC
* * *
13188435 TAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCTTATCGATCCACGGCTTGTGCATCCCGT
710 T-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
13188500 CTCTCTGGCCAGCGTAGTACCCGCCC-CCTCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCA
774 CTCTCTGGCCGGCGTAGTGCCCGCCCGCC-CGCCCG-CCACTCGTTTCGTCGGTTGGCTTAGGCA
** * * *
13188564 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAAGAT
837 TACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGAT
*** * ** * * * *
13188621 CAACAGCACGCAAAATGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTATTGG-CAGCT
1 CGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCT-TTGGCCGGCT
* * * * * *
13188685 AAGCACCCGCATGCTCGTTTCGTAGGTTGAATTAGGCATACTGAGTTAATTCCCAGTCTAAGCAT
65 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* ** * * * *
13188750 ACGGAGTTCATTTCCAGTCTAAGATTTGATCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCG
130 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
13188815 GGCATGTGTTCGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCT
195 GGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT
13188860 GGAGCATCAG
Statistics
Matches: 3196, Mismatches: 370, Indels: 378
0.81 0.09 0.10
Matches are distributed among these distances:
845 9 0.00
846 30 0.01
847 81 0.03
848 79 0.02
849 136 0.04
850 82 0.03
851 53 0.02
852 11 0.00
853 171 0.05
854 9 0.00
855 2 0.00
856 1 0.00
857 5 0.00
858 1 0.00
859 3 0.00
860 22 0.01
861 34 0.01
862 34 0.01
863 53 0.02
864 210 0.07
865 373 0.12
866 4 0.00
867 1 0.00
868 3 0.00
869 2 0.00
871 2 0.00
872 1 0.00
873 2 0.00
874 39 0.01
875 70 0.02
880 1 0.00
882 3 0.00
885 1 0.00
890 1 0.00
891 1 0.00
892 1 0.00
893 23 0.01
894 30 0.01
895 239 0.07
896 58 0.02
897 46 0.01
898 70 0.02
899 261 0.08
900 257 0.08
901 169 0.05
902 151 0.05
903 50 0.02
904 41 0.01
905 57 0.02
906 118 0.04
907 42 0.01
908 36 0.01
909 17 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
CGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTG
AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTAGCACAGGAGAACCTGACCGA
CGACATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
CCGACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAACTGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGAT
Found at i:13188749 original size:26 final size:26
Alignment explanation
Indices: 13188720--13188772 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13188710 GTTGAATTAG
*
13188720 GCATACTGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
* *
13188746 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
13188772 G
1 G
13188773 ATTTGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:13189070 original size:26 final size:26
Alignment explanation
Indices: 13189034--13189086 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13189024 GTTGACTTAG
13189034 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13189060 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13189086 G
1 G
13189087 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13191543 original size:26 final size:26
Alignment explanation
Indices: 13191493--13191544 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13191483 GTTGACTTAG
* * *
13191493 GCATACGGAGTTCATTCCCGCTCTAA
1 GCATACGAAGTTCAGTCCCACTCTAA
*
13191519 GCATACGAAGTTCAGTCCCATTCTAA
1 GCATACGAAGTTCAGTCCCACTCTAA
13191545 TATCGAACTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCCACTCTAA
Found at i:13192402 original size:26 final size:26
Alignment explanation
Indices: 13192372--13192424 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13192362 GTTGACTTAG
13192372 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
13192398 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13192424 G
1 G
13192425 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13193290 original size:26 final size:26
Alignment explanation
Indices: 13193254--13193306 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13193244 GTTGACTTAG
*
13193254 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
13193280 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
13193306 G
1 G
13193307 ATTGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:13193338 original size:882 final size:887
Alignment explanation
Indices: 13190837--13193957 Score: 3775
Period size: 882 Copynumber: 3.5 Consensus size: 887
13190827 CACCAGAGCA
* ** * **
13190837 TGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCCTTAAAGTGCAT
1 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCAT
** * * * *
13190902 TTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCAA
66 TCAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAA
* * *
13190967 ATGGTCACAAAATCATATACACTTCGAGTTTTTAGCT-GAATTGTTTTGTGC--GCCAACAAAAA
131 ATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGAATT-TTTTGTGCATGCCAACAAAAA
* * * * * *
13191029 TACAAGCATCACGTCTAGCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTCAAAAATCCCG
195 TACAAGGATCACATCTACCAA-TTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCG
* * *
13191094 AACCACAAAAAGTTTCAAAAACCATGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACG
259 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * * *
13191159 TGAACGCTTAAGGGACCATTGTCTAAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
324 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
13191224 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGG
389 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGG
* * * * * *** *
13191289 CCGACGTAGTGCCCGCC-CGCCCGTTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCC
454 TCGGCGTAGTGCCC-CCGC-CCCGCTCGTTTCGTCAGTTGGCTTAGGCATGCAGAGTTCAATCCC
* * *** ** * * * * *
13191353 AGTCTAAGATCAGATCGAACTGAGGGTTACGGCGGTAGGATCGGTAGCACACAGAGGGGGACCTG
517 AGTCTAAGATCAGACCGAACCGACAATTGTGGCAGTAGGATCAGCAGCACGCAGAGGGGGACCCG
* ** * * * * * *** *
13191418 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTCAACGCCCGCACGTTCGTTTCGTGG
582 GCCGATCCCCGGCTTGCGCATCCCGCCCCTAAGGCCGACTGAGCACCCACACACCCGTTTCATGG
* * * * *
13191483 GTTGACTTAGGCATACGGAGTTCATTCCC-GCTCTAAGCATAC-GAAGTTCAGTCCCATTCTAAT
647 GTTGACTTAGGCATACAGAGTTCATTCCCAG-TCTAAGCATACAG-AGTTCATTCCTAGTCTAAG
* * * * * * *
13191546 ATCGAACTGGACC-GAGGTTTAC-AGCAGCACATGCTGGGTTCGGGCATGTGCTGGTGCTAGTGC
710 ATCGAACCGGACCAAAGG-TTGCGA-CAGCACATGCTAGGCTAGGGCATGT-AT--TG---GTGC
* * * * ** * *
13191609 CGCATTTTTCTTCGTCAGGGCACCA-TCGCCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTG
767 CACATTTTTCTTCGCCGGGGCACCACT-G-C--ATCA-C-T-GGAGAACCTGACTGGCAGCATTA
* * * * ** * **
13191673 GGGTTCCAACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG-CAATGGTGCCAGTACT
825 GGGTTCCGACGATCGGGGGGCCAGAGGGGTGTGCACACATGATGTGCCACGGGTACTGGTACT
* *
13191735 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
1 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCAT
** * *
13191800 TTGAGAATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
66 TCAAG-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCA
* * * *
13191865 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGGT-GAATTTTTTTGCGCATGCCAACAAAA
130 AATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGAA-TTTTTTGTGCATGCCAACAAAA
* * * *
13191929 ATATAAGGATCACGTCTACCAAGTTTGAGGCCAAAA---CA-CC----------T------T-CT
194 ATACAAGGATCACATCTACCAA-TTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCC
* * * *
13191973 G-A----AAAAATTTTAAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCAC
258 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
** * * * * *
13192033 GCAAAGGCTTCAGGGACCATTGTATGAATTCACAACCCATAAAAATGGCATTGGCATGCAAAAAT
323 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* *
13192098 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAGGGCTTCCGCATCCCGTCTCTCTG
388 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTG
* * * *
13192163 GCCGGTGTAGTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATGCAGAGTTCAT
453 GTCGGCGTAGTG-CC-CCCG--C-CCCGCTCGTTTCGTCAGTTGGCTTAGGCATGCAGAGTTCAA
*
13192228 TCCCAGTCTAAGATCAGACCGGACCGACAATTGTGGCAGTAGGATCAGCAGCACGCAGAGGGGGA
513 TCCCAGTCTAAGATCAGACCGAACCGACAATTGTGGCAGTAGGATCAGCAGCACGCAGAGGGGGA
* * * *
13192293 CCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTAAGGCCGGCTGAGCTCCCACACACCCGTTTC
578 CCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTAAGGCCGACTGAGCACCCACACACCCGTTTC
*
13192358 ATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTA
643 ATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTA
** * * * *
13192423 AGATCGAATTGGAGCAAAGGTTGCGACAGCACATGTTGGGCTAGGGCATGTGTTGGTGCCACATT
708 AGATCGAACCGGACCAAAGGTTGCGACAGCACATGCTAGGCTAGGGCATGTATTGGTGCCACATT
* *
13192488 TTTCTTCGCTGGGGCACCA-T-CA-C-C-GGAGAACCTGACTGGCAGCATTAGGTTTCCGACGAT
773 TTTCTTCGCCGGGGCACCACTGCATCACTGGAGAACCTGACTGGCAGCATTAGGGTTCCGACGAT
* * * *
13192548 CGAGGGGGCC-G-GGAGGTGTGCGCACATGATGTGCGATGGGTACTGGTATT
838 CG-GGGGGCCAGAGG-GGTGTGCACACATGATGTGCCACGGGTACTGGTACT
* * *
13192598 TGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
1 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCAT
** *
13192663 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAA
66 TCAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAA
*
13192728 ATGGCCACAAAATCTTGTACACTTCGAGTTTTTGGCT-GAATTTTTTTGTGCATGCCAACAAAAA
131 ATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGAA-TTTTTTGTGCATGCCAACAAAAA
* * *
13192792 TACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAATCTCG
195 TACAAGGATCACATCTACCAA-TTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCG
*
13192857 AACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
259 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
13192922 TGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCTTTGGCACGCAGAAATA
324 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
13192987 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGG
389 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGG
*
13193052 TCGGCATAGTGCCCCCG-CCCGCTCGTTTCGTCAGTTGGCTTAGGCATGCAGAGTTCAATCCCAG
454 TCGGCGTAGTGCCCCCGCCCCGCTCGTTTCGTCAGTTGGCTTAGGCATGCAGAGTTCAATCCCAG
* * *** *
13193116 TCTAGGATCAGACCGAACTGAGGGTTGTGGCAGTAGGAT-AGGCAGCATGCAGAGGGGGACCCGG
519 TCTAAGATCAGACCGAACCGACAATTGTGGCAGTAGGATCA-GCAGCACGCAGAGGGGGACCCGG
** * *
13193180 CCGATCCCCGGCTTGCGCATCCCGCCCCTCGGGCCGACTTAGCACCCACACACCCGTTTCGTGGG
583 CCGATCCCCGGCTTGCGCATCCCGCCCCTAAGGCCGACTGAGCACCCACACACCCGTTTCATGGG
13193245 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTACC-AGTCTAAGAT
648 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT-CCTAGTCTAAGAT
* * * * **
13193309 TGAACCGGACCAAGGGTTGCGATAGCACATGCTAGGCTCGGGCATGTATTGGTGCTGCATTTTTC
712 CGAACCGGACCAAAGGTTGCGACAGCACATGCTAGGCTAGGGCATGTATTGGTGCCACATTTTTC
* * * **
13193374 TTCGCCGGGGCACCATCGTCGGAGCATCACTGGAGAACTTGACTGGCGGCATTGGGGTTCCGGTG
777 TTCGCCGGGGCACCA-C-T----GCATCACTGGAGAACCTGACTGGCAGCATTAGGGTTCCGACG
*
13193439 ATCGGGGGGCCAGAGGGGTGTGCACACATGATGTGCCACGGGTGCTGGTACT
836 ATCGGGGGGCCAGAGGGGTGTGCACACATGATGTGCCACGGGTACTGGTACT
13193491 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCAT
1 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCAT
* *
13193556 TCAAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
66 TCAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAA
*
13193621 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGAATTTTTTGTGCATGCCAACAAAAAT
131 ATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGAATTTTTTGTGCATGCCAACAAAAAT
* * *
13193686 ACAAGGATCACGTCTACCAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCTAA
196 ACAAGGATCACATCTACCAATTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAA
* ** *
13193751 CCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTG
261 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
13193816 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-CTAGAAATAT
326 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC-AGAAATAT
* * *
13193880 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTATGCATCCCGTCTCTCTGGT
390 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGT
13193945 CGGCGTAGTGCCC
455 CGGCGTAGTGCCC
13193958 GCATTTTTCT
Statistics
Matches: 1955, Mismatches: 209, Indels: 124
0.85 0.09 0.05
Matches are distributed among these distances:
861 2 0.00
862 201 0.10
863 85 0.04
865 3 0.00
866 1 0.00
867 1 0.00
868 1 0.00
870 1 0.00
873 26 0.01
875 179 0.09
876 7 0.00
877 1 0.00
878 1 0.00
879 236 0.12
880 8 0.00
881 2 0.00
882 285 0.15
883 3 0.00
884 1 0.00
885 1 0.00
886 4 0.00
887 3 0.00
888 180 0.09
890 2 0.00
891 2 0.00
892 240 0.12
893 263 0.13
894 5 0.00
897 1 0.00
898 67 0.03
899 99 0.05
900 2 0.00
901 42 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (887 bp):
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCAT
TCAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAA
ATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGAATTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACATCTACCAATTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAA
CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTC
GGCGTAGTGCCCCCGCCCCGCTCGTTTCGTCAGTTGGCTTAGGCATGCAGAGTTCAATCCCAGTC
TAAGATCAGACCGAACCGACAATTGTGGCAGTAGGATCAGCAGCACGCAGAGGGGGACCCGGCCG
ATCCCCGGCTTGCGCATCCCGCCCCTAAGGCCGACTGAGCACCCACACACCCGTTTCATGGGTTG
ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAA
CCGGACCAAAGGTTGCGACAGCACATGCTAGGCTAGGGCATGTATTGGTGCCACATTTTTCTTCG
CCGGGGCACCACTGCATCACTGGAGAACCTGACTGGCAGCATTAGGGTTCCGACGATCGGGGGGC
CAGAGGGGTGTGCACACATGATGTGCCACGGGTACTGGTACT
Found at i:13196523 original size:26 final size:26
Alignment explanation
Indices: 13196493--13196543 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13196483 TGACTTAGGG
*
13196493 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
13196519 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
13196544 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:13196987 original size:882 final size:884
Alignment explanation
Indices: 13195633--13203730 Score: 5568
Period size: 882 Copynumber: 8.9 Consensus size: 884
13195623 GTTGACTTAG
* * * *
13195633 GCATACAGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTGCGACAGCCCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
13195698 CTCGGAGCATGTGTTGGTGCCACATTTTTCTTCG-CTGGGGCACCATCGTCGGAGAACCTGACTG
66 CTCGG-GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGAACCTGACCG
* * ** * *
13195762 GCAGCATTGGGGTTCCGGTGATCGGGGGGGTC-AGGGGGTGTGCGCACATGATGTGTGATGGGTG
129 ACGGCATTGGGGTTCCGACGATC-GGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
13195826 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
13195891 AAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * * *
13195956 TTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTACCTGACTTTTTTT-TTCCTACCA
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
13196020 ACAAAAATAAAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAA
388 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
13196085 AATCTCGAATCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
453 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
13196150 CTTCACGTCAAGGCTTAAGGGACCATTTTATGAAATTACAAGCCATAAAAATGGAATTGGCATGC
518 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * *
13196215 AGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATTGATCCACGACTTGCGCATCCTGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
13196280 TCTCTGGCCGTCGTAGTG-CCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTT
648 TCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * ** *
13196344 CATTCCCAATCGAAGATTGGATCAGACCGAGGGTTGTAGTAGTAGGATCGACAGCATGCAGAGGG
713 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCATGCAGAGGG
* * * * * *
13196409 GGACCCGA-CTGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCAGCTGACCGCCCGCACCCTTG
778 GGACCCGATC-GATCCCCGGCTT-CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
* *
13196473 TTTCATGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAA
841 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13196517 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGAAAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * **
13196582 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGTCACCATCGCCGGAGAACCTGACTTAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGAC
*
13196647 GGCATTAGGG-TCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
131 GGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
13196711 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
13196776 AGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * ** *
13196841 TTCAAATTGTCATACAATCTTGTACACTTCTAGTACTTAGCTAAATTTTTTTGTGCATGCCAACA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
13196906 AAAATACAAGGATGACGTCTACCAAGTTTGGGGTCGAAACTCCTTCCGAAAAAATTTTACAAAAT
391 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
13196971 CCCGAACCGT-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
456 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
13197035 TACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAGA
521 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
*
13197100 AATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCGA-GGCTTGCGCATCCCGTCTC
586 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGCTTGCGCATCCCGTCTC
* * *
13197164 TCTGGCCGGCGTAGTG-CCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
650 TCTGGCCGGCGTAGTGCCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
13197228 TTCCCAGTCTAAGATTGGACCAGACTGATGGTTGTGGTAGTAGGATCGGCAGCATGCAGAGGGGG
715 TTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCATGCAGAGGGGG
* * *
13197293 ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCTGCACACTCGTTT
780 ACCCGATCGATCCCCGGCTT-CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
* **
13197358 CGTAGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
844 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
13197399 GCGTAAGGAGTTCATTGCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * **
13197464 CTCGGGCAAGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGGGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---GC--CG---GAGA
* ** * *
13197529 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGACGGGGTGTGCGCACATGATATGT
120 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
* * *
13197594 GATGGGTGCTAGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
13197659 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCATTGGCCATTAAAGTGTTTGAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
13197724 GGGACAATTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
13197789 GCATGCCAAAAAAAATACAAGGATGACCTTTACCAAGTTT-GGGCTGAAAACTCCTTCCAAAAAA
380 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCGAAAAA
* **
13197853 ATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
444 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
13197918 GCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
509 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
13197983 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCATATCGATCCAAGGCTTGCG
574 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * *
13198048 CATCCCGTCTCTCCAGCCCGTGTAAG-GCCCGCCTGCCCACCCCACCGCTCGTTTCATCGGTTGG
639 CATCCCGTCTCTCTGGCCGGCGT-AGTG-CC-CC-G--C-CCGC-CCGCTCGTTTCATCGGTTGG
* ** *
13198112 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCAGATCGAGGGTTGCGGCAGTAGGAT
696 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGAT
* * * * * *
13198177 CGGCAGCATGCAGAAGGGGTCCCGATCGATCCCCAGCTTACGTATCCCGCCTCTCTGGCCGGCTG
761 CGACAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTT-CGCATCCCGCCCCTCTGGCCGGCTG
13198242 AGCACCCGCACGCTCGTTTCGT-GG--G---T-----T---GA---C-TT---AG-----
825 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
13198276 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * *
13198341 CTCCGGCATGTGTTGCTGTCGTATTTTTCTTCGTCGGGGCACAATCACCGTAGAACCTGACC-AG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGA-
* * * * * * *
13198405 CGGTATTAGGGTTTCGACGATCGGGGGGACCGGGGGGTTGTGCACACATGATGTGTGATGGGTGC
130 CGGCATTGGGGTTCCGACGATCGGGGGG-TCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
13198470 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
13198535 AGAGCATTTGAGATTTTACAGGTTTGCGGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* ** * * *
13198600 TTTTCAAATGTTCACAAAAGGTTGTAAACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGTCAA
324 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * ** ** *
13198665 CAAAAATAAAAGGATCACGTCTACCAATTTTCTGGAAAAAACTCCTTTCGAAAAAATTTTAAAAA
389 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** * * * *
13198730 ATCAAGAACCGCAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCATCTTGCCATGAAAC
454 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
13198795 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCT
519 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
13198860 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
584 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
13198925 CTCTGGCTGGTGTAGTG-CCCGCTCGTCCGCTCGTTTCATCAGTTGTGC-TAGGCATACGGAGTT
649 CTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCTCGTTTCATCGGTTG-GCTTAGGCATACGGAGTT
** *
13198988 CATTCCCAGTCTAAGATTGGGTCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCATGCAGAGGG
713 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCATGCAGAGGG
* * * * * *
13199053 GGGCCCGATCGATCCTCGGCTTCGACATACCGCCCTTCTGGCCGGTTGAGCACCCGCACGCTCCT
778 GGACCCGATCGATCCCCGGCTTCG-CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGT
*
13199118 TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13199161 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-TAGGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGACAGCACATGCTGG
*
13199225 GCTCAGGG-ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTGGGAGCATCGTCGGA
65 GCTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC------G---C--CGGA
* ** * ** * **
13199289 GAACCTGACCGGCGGCATTGCCGCCACATTTTTC-ATC-ATCGGGGCACCATCGTCGGAGCATCG
118 GAACCTGACCGACGGCATTG--G-----GGTTCCGA-CGATCGGGG---GGTCG--GGGGGGT-G
* * * * * * * * ** ******* **** * *
13199352 CCGGAGAACCTAACCG-GCGGTATTGGG-GTTCCG-AC--GATCGGGGGGGTGG-GGGGTGTGCG
169 --TGCGCACATGA-TGTGC-G-A-TGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTAT-CC
* * ** * * * * *** * *** **** * **
13199411 CACATGATGTGCGGT-GGGTACTGGTACTTGGCCCTTATATTG-GCCCCCT-ATCCCTAATCAAA
226 CTCATCA--AAC-CTCGAGAACT--CAC-ACCCCCTTA-A-AGAG-CATTTGAGATTTTA-CAGG
** * * * * * * * *** * * * * * *
13199473 CCT-CAAGAACTCA-CACCCCTTTAAAGAGCATTTGAGAT-TTTACAGGTTTGTTGCCAGTAGCC
281 TTTGC-TG--C-CAGTA-GCCATTAAAGTG--TCTGAAATGGGGACA-CTTT-TTTCAAATGGTC
* * * * * ** * ** * *
13199535 ATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCA-CAAAATCTTGTCCACTTTGAG-T
337 A-CAAA--ATCT----T--GTACAC----TTCGAGTTTTTAGCTGAAT-TT-T----TTTGTGCA
*** * ** * ***** * * * * * *** * ** ****
13199598 TTTTAGCCGAATTTTTTTGTTGCATGCCAATAAAAAAACAAGGATCATGTCTCCCAAGTTTGGGC
383 TGCCAACAAAAATACAAGGAT-CACGTC--T-----ACCAA-G-T-TTGGGGCCAAAACTCCTTC
* * **** * * ***
13199663 C-CAAAACTCCTTTCGAAAAAATTTTAAAAAATCC-CAAACCA-TAAAAAGTTTCAAAAATCGTG
437 CGAAAAAAT--TTT--AAAAAA---TCCCGAA-CCGTAAA-AAGT--TTC-----AAAAATCGTG
* *
13199725 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGA
486 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
13199790 ATTTACAAGCCATAACAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
551 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
13199855 ACCCTATCGATCCACGGCTTGCGCATCACATCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGTCT
616 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCC--C-
*
13199920 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGAC
670 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
* * * * * * * *
13199985 CAAACCGAGGGTTGCAGCAGTAGGTTCGGCAGTACGTAGAGGGGGACCCGGTCGATCCCCGGCTT
735 CAGACCGAGGGTTGCGGCAGTAGGATCGACAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTT
* * * **
13200050 GGACATCCTGCCCCTCTGGCCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
800 CG-CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
13200115 CGGAGTTCATTCCCAGTCTAA
864 CGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
13200136 GCATATGGAGTTCATTCCCAGTCTAAGAGCAGATCAGATCAAGGGTTAC-AGTAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * * * ** * *** *
13200200 GCTCTGGCGTGCGCTTGTGTCTTATTTTTCTTCGTC--GG-AGCATCGGTAGAGAACTTGACCGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGA
* * * *
13200262 CAGCATTGGGGTTAC-AGCGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGTTGGGTGC
130 CGGCATTGGGGTTCCGA-CGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
13200325 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
13200390 AGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAATGTGTCTGAAATGGGGACACTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
13200455 TTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
324 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
** * * *
13200520 CAAAAATACCCGGGATCACCTCTACCAAGTTTGGGGCCGAAACTCCTTCCGAAAAAATTTAAAAA
389 CAAAAATA-CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * * * *
13200585 AATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAGAGCAAACGAGTTGTCTTCCCATGAAA
453 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
13200650 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCGATAAAAATGGCATTGGCATGC
518 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
13200715 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
13200780 TCTCTGGCCGGCATAGTGCCCACCCGCCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
648 TCTCTGGCCGGCGTAGTG--C-CCCG--C--CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
** ** * * * * * * * * *
13200845 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAAGAGTTGCGGTAGCAGGATAGAAAGTACG
706 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCATG
* * *
13200910 CAGAGGGGGACCCGACCGATCCTCC-GCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
771 CAGAGGGGGACCCGATCGATCC-CCGGCTT-CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
* *
13200974 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
834 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * * * * ** *
13201025 G-AT-CGGACCGGACCGAGGGTTGGGGCAG-C-AGGATTGGCAGCACACAAAGGG-TGCCCGACC
1 GCATACGGA---GTTC-A---TT--CCCAGTCTAAGATCGG-ACCAGACCGAGGGTTG--CGACA
** * *** * * * * ***
13201085 G-ATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCACGTACGCTCGTTTCGT-GGG
54 GCA--CATG-C-TGGGC-T--CGGGCATGT-GCTGG-TG-CCGCA--T-TTTTC--TTCGTCGGG
* * ** * ** * * * ** *
13201148 TTGACTTAGGCAT--ACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
104 --G-C--A-CCATCGCCGGAGAACCTGACC-GAC--GGCAT--TG-G--GGTT-CC-G---ACGA
** * ** * * * * * *
13201211 TCGGATAGGAC-CAGGGTTGTGGCAGCACATGCTG-G-GCTCGG-GCAT-GTGCTGGTGCCACAT
150 TCGG-GGGGTCGGGGGGGTGT-GC-GCACATGATGTGCGATGGGTGC-TGGTACTTG-GCC-C--
* * * * ** * * * * * ** * *** *
13201271 TTTTCTTCGTCGGGGCACC-ATCGCCGGAGC-ATCATTGGAGAACCTGACCGACGGCATTGGGGT
207 TTAT-AT--T--GGCCCCCTATC-CCTCATCAAAC-CTCGAGAA-CTCA-C-ACCCCCTTAAAGA
* **** **** * * * ** ****
13201334 TCCGGCGATCGAGGGGACCGGGGGGTGTGC-GCACATGATGTGTGATGGGTGCTGGTACTTGGCC
262 GCATTTGA--GATTTTA-C---AGGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-GT-C-T-G--
* * ** * ** **** ** * *
13201398 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
310 ---AAATGGGGACACT-T---TTTTCAAA--T-G-G---TCACAAAATCTTGTACA-C-TTCGAG
* * ** ** * * * * **
13201463 ATTTTA-C--AAGTTTGCTGT-CAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCA
359 TTTTTAGCTGAATTTTTTTGTGCA-T-GCCAACAAAAAT-AC---AA---GGATCACGTCTACCA
* * **
13201522 A--AT-GGTCACAAAATCTTGTACACTT-CGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAACA
415 AGTTTGGGGC-CAAAA-C---T-C-CTTCCGA------A----AA----AAT-T--TT----A-A
** * ** * * *
13201583 AAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
451 AAAAT-C-CCGAAC-CG--TAAAAAGTTT-----CAAAAAT-CGT--G-AAAAA---TAGAAAA-
* * **
13201648 CCGAACCACAAAAAGTTTCAAAAATCATGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTC
498 -CG----------AG--TC----GTCTTG--CCAT-G--AA--A-----C-T----T-------C
*
13201713 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAA
522 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * *
13201778 ATATGAAGATGTACCTAAACCCACCAACCACCTTATTGATCCACGGCTTGCGCATCCCGTCTCTC
587 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
13201843 TGGCTGGCGTAGTG-CCTGCCCGCCCGCTCGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATT
652 TGGCCGGCGTAGTGCCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* ** * * * * ** *
13201907 CCCAGTCAAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTGGTAGCATGCAGAAGGGGAC
717 CCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCATGCAGAGGGGGAC
* * * * *
13201972 CCGACCGATCCCCGGCTTGGGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCG
782 CCGATCGATCCCCGGCTT-CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCG
*
13202037 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
846 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
13202076 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C--A---GAC
* * * ** *
13202141 CGAGGGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCAACATTTTTCTTCATCGGGG
40 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * **
13202206 CACCATCGTCGGAGCATAACCGGAGAACCTGACCGGTGACATTATGGTTCCGACGATCGGGTGGG
105 CACCATCGCCGGAG---AACC--TG-ACC-GA-C-G-G-CATTGGGGTTCCGACGATCGGG-GGG
* * * *
13202271 CCGGGTGGTGTGTGTGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
158 TCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
13202336 ATCCCTTATCAAACCTCAAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
222 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
13202401 GACAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
287 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
13202466 CTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
352 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
13202531 TTTGGAGCCAAAACGCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
417 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
13202596 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGT
482 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** *
13202661 ATGAA-TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACG
547 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
*
13202725 TACCACCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-----GCCCGC
612 TACCA-CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGC
* **
13202785 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACC
676 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACC
* * * * ** * *
13202850 AAGGGTTGCGGCAGCAGGATTGGCAGCATATAGAAGGGGACCCGATCGATCCCCGACTTGCGCAT
741 GAGGGTTGCGGCAGTAGGATCGACAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTT-CGCAT
* * * *
13202915 CCCGCCCCTCTAGCCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----T-C---G-
805 CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
13202969 ---------G-CT--
870 TCATTCCCAGTCTAA
* **
13202972 ---TACGGAGTTCATTCCCAGTCTAAGAT-GGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
13203033 CTCAGACATTTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCAACGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGG-------G-C--ACCATCGCCGGAGA
* ** * * * *
13203098 ACGTGA-TTAGTGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTTGTGTGCACATGATGT
120 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGG-TCGGGGGGGTGTGCGCACATGATGT
* *
13203162 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
13203227 CACCTCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
13203292 TGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
13203357 GTGCATGCCAAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGGGCAAAACTCTTTCCGAAAA
378 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * **
13203422 TATTTTAAAAAATCTC-AAAC-T-----G---CAAAAATTATGAAAAATAGAAAACGAGTCGTCT
443 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
13203477 TGCCATGAAACTTTATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
13203542 ATTGGCATGCAGAAATATGAAGATATGCCTAAACCCATCTACCACCCTATCGATCTACGGCCTGC
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
13203607 GCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCTGCCTGCCCACTCGTATCGTCGGTTGG
638 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCCG-C--CC-GCCCGCTCGTTTCATCGGTTGG
* ** *
13203672 CTTAGGCATACGGAGATCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
696 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAG
13203731 CACATGCTGG
Statistics
Matches: 5655, Mismatches: 1063, Indels: 1009
0.73 0.14 0.13
Matches are distributed among these distances:
855 116 0.02
856 59 0.01
858 3 0.00
859 147 0.03
860 5 0.00
861 1 0.00
862 1 0.00
863 3 0.00
864 6 0.00
865 277 0.05
866 120 0.02
867 528 0.09
868 3 0.00
869 3 0.00
870 1 0.00
871 3 0.00
872 1 0.00
873 2 0.00
874 5 0.00
875 1 0.00
876 1 0.00
877 108 0.02
879 1 0.00
880 2 0.00
881 8 0.00
882 682 0.12
883 135 0.02
884 65 0.01
885 101 0.02
886 4 0.00
887 5 0.00
888 7 0.00
889 185 0.03
890 7 0.00
891 1 0.00
892 3 0.00
893 219 0.04
894 297 0.05
895 193 0.03
896 26 0.00
897 5 0.00
898 6 0.00
899 8 0.00
900 10 0.00
901 1 0.00
902 15 0.00
903 167 0.03
904 4 0.00
905 4 0.00
906 13 0.00
907 8 0.00
908 5 0.00
909 22 0.00
910 7 0.00
911 11 0.00
912 7 0.00
913 4 0.00
914 7 0.00
915 11 0.00
916 23 0.00
917 5 0.00
918 7 0.00
919 185 0.03
920 11 0.00
921 14 0.00
922 66 0.01
923 77 0.01
924 7 0.00
925 2 0.00
926 1 0.00
929 14 0.00
930 21 0.00
931 9 0.00
932 12 0.00
933 11 0.00
934 15 0.00
935 12 0.00
936 11 0.00
937 7 0.00
938 14 0.00
939 19 0.00
940 17 0.00
941 15 0.00
942 5 0.00
943 9 0.00
944 11 0.00
945 4 0.00
946 21 0.00
947 17 0.00
948 2 0.00
949 11 0.00
950 11 0.00
951 7 0.00
952 2 0.00
953 9 0.00
954 6 0.00
955 8 0.00
956 10 0.00
957 3 0.00
959 1 0.00
960 8 0.00
961 20 0.00
963 180 0.03
964 6 0.00
965 6 0.00
966 2 0.00
967 1 0.00
968 6 0.00
969 3 0.00
970 15 0.00
971 16 0.00
972 18 0.00
973 16 0.00
974 6 0.00
975 273 0.05
976 4 0.00
977 9 0.00
978 4 0.00
979 5 0.00
980 3 0.00
981 1 0.00
982 6 0.00
983 1 0.00
984 1 0.00
987 2 0.00
988 2 0.00
989 1 0.00
990 1 0.00
992 1 0.00
993 1 0.00
994 2 0.00
995 1 0.00
998 1 0.00
999 1 0.00
1000 6 0.00
1001 1 0.00
1002 2 0.00
1003 5 0.00
1004 4 0.00
1005 8 0.00
1006 3 0.00
1007 8 0.00
1008 1 0.00
1009 8 0.00
1010 18 0.00
1011 4 0.00
1012 14 0.00
1013 14 0.00
1014 7 0.00
1015 1 0.00
1016 1 0.00
1017 5 0.00
1019 8 0.00
1022 1 0.00
1023 8 0.00
1024 168 0.03
1025 146 0.03
1026 128 0.02
1027 120 0.02
1028 70 0.01
1029 106 0.02
1030 354 0.06
1031 214 0.04
1032 184 0.03
1033 88 0.02
1034 111 0.02
1035 145 0.03
1036 137 0.02
1037 126 0.02
1038 188 0.03
1039 139 0.02
1040 100 0.02
1041 85 0.02
1042 72 0.01
1043 55 0.01
1044 42 0.01
1045 39 0.01
1046 23 0.00
1047 29 0.01
1048 27 0.00
1049 41 0.01
1050 29 0.01
1051 237 0.04
1052 27 0.00
1053 134 0.02
1054 477 0.08
1055 251 0.04
1056 162 0.03
1057 50 0.01
1058 23 0.00
1059 363 0.06
1060 209 0.04
1061 12 0.00
1062 2 0.00
1063 11 0.00
1064 9 0.00
1065 65 0.01
1066 4 0.00
1067 4 0.00
1068 2 0.00
1069 51 0.01
1070 5 0.00
1071 9 0.00
1072 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGAC
GGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCATGCAGAGGGGGA
CCCGATCGATCCCCGGCTTCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13199357 original size:68 final size:68
Alignment explanation
Indices: 13199243--13199376 Score: 214
Period size: 68 Copynumber: 2.0 Consensus size: 68
13199233 ATGTGCTGGT
* * * * *
13199243 GCCACATTTTTCTTCGTCGGGGCACCATCGTGGGAGCATCGTCGGAGAACCTGACCGGCGGCATT
1 GCCACATTTTTCATCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACCGGCGGCATT
13199308 GCC
66 GCC
*
13199311 GCCACATTTTTCATCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACCGGCGGTATT
1 GCCACATTTTTCATCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACCGGCGGCATT
13199376 G
66 G
13199377 GGGTTCCGAC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 60 1.00
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.22
Consensus pattern (68 bp):
GCCACATTTTTCATCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACCGGCGGCATT
GCC
Found at i:13200146 original size:26 final size:26
Alignment explanation
Indices: 13200110--13200162 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13200100 GTTGACTTAG
13200110 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13200136 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13200162 G
1 G
13200163 AGCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13201145 original size:158 final size:159
Alignment explanation
Indices: 13200816--13201183 Score: 515
Period size: 158 Copynumber: 2.3 Consensus size: 159
13200806 CCCGTCCGCC
* * * *
13200816 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCA
1 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
* * * * *
13200881 AGAGTTGCGGTAGCAGGATAGAAAGTACGCAGAGGGGGACCCGACCGATCCTCCGCTTGTGCATC
66 AGAGTTGCGGCAGCAGGATAGAAAGCACACAAAGGGGGACCCGACCGATCCTCCGCTTGCGCATC
* *
13200946 CCGCCCCTCTGGCCGGCTGAGCGCCCGCA
131 CCACCCCTCTGGCCGGCTGAGCGCACGCA
* * *
13200975 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCG
1 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
* * * ** *
13201040 AGGGTTGGGGCAGCAGGATTGGCAGCACACAAAGGGTG-CCCGACCGATCC-CCGACTTGCGCAT
66 AGAGTTGCGGCAGCAGGATAGAAAGCACACAAAGGGGGACCCGACCGATCCTCCG-CTTGCGCAT
*
13201103 CCCACCCCTCTGGCCGGCTGAGCGCACGTA
130 CCCACCCCTCTGGCCGGCTGAGCGCACGCA
*
13201133 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
13201184 CATACAGAGT
Statistics
Matches: 185, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
157 3 0.02
158 96 0.52
159 86 0.46
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
AGAGTTGCGGCAGCAGGATAGAAAGCACACAAAGGGGGACCCGACCGATCCTCCGCTTGCGCATC
CCACCCCTCTGGCCGGCTGAGCGCACGCA
Found at i:13201186 original size:26 final size:26
Alignment explanation
Indices: 13201157--13201209 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13201147 GTTGACTTAG
*
13201157 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13201183 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13201209 G
1 G
13201210 ATCGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13202086 original size:26 final size:26
Alignment explanation
Indices: 13202050--13202128 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
13202040 GTTGACTTAG
13202050 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13202076 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13202102 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13202128 G
1 G
13202129 ATCGAACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13204591 original size:26 final size:26
Alignment explanation
Indices: 13204552--13204604 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13204542 GTTGACTTAG
*
13204552 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGACTTCATTCCCAATCTAA
* *
13204578 GCATACGGACTTCATTCCTAGTCTAA
1 GCATACGGACTTCATTCCCAATCTAA
13204604 G
1 G
13204605 ATTCGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAATCTAA
Found at i:13208007 original size:26 final size:26
Alignment explanation
Indices: 13207978--13208030 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13207968 CCGGTCTGAT
13207978 CTTAGACTGTG-AATGAACTCCGTATG
1 CTTAGACTG-GCAATGAACTCCGTATG
13208004 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
13208030 C
1 C
13208031 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:13208917 original size:26 final size:26
Alignment explanation
Indices: 13208881--13208933 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13208871 TCAGTTTGAT
13208881 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
13208907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
13208933 C
1 C
13208934 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:13209492 original size:897 final size:897
Alignment explanation
Indices: 13207251--13210682 Score: 4683
Period size: 892 Copynumber: 3.8 Consensus size: 897
13207241 TGTGGTGTCG
* * * * * * *
13207251 CAACCCTCGGTC-CGTCTGATCTTAGACTGGGTATGAACTTCGTGTGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCGACGAA
* *
13207315 ACGAGCAGGCGAGCAGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 ACGAGC--G-G-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
13207380 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTGTG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
* * * *
13207445 GCTTGTAAATGCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCACGGCAAGACGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTT
* ** * *
13207510 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
257 TTCTATTTTTCATGATTTTCAAAACTTTTTGCGGATCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
13207575 GTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAACTTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* * *
13207640 CTAAAAACTAGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
13207705 TAATGGCTGCTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
13207770 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGTG
* ** * *
13207835 CACACCCCC-CGGGCCCCCGTATCGTTGGAACCCCAACGACGCCGGTCAGGTTCTCC---G--G-
582 CAC-CCCCCACCGGCCCCCG-ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGC
** *
13207893 T----GATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGATG
645 TCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTG
* * * *
13207954 CCACAACCCTCGGTCCGGTCTGATCTTAGACTGTGAATGAACTCCGTATGCTTAGACTGGCAATG
710 CCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* *
13208019 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCGATCGGCCAGAGGGGCAG
775 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCGGTCGGCCAGAGGGGCAG
* * * * *
13208084 GATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTTTTCGTGCTGCCGATCCTACTGCCA
840 GATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTTTGCATGCTGCCGATCCTACTACCA
* *
13208142 CAACTCTCAGTCTGATCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
13208207 ATGAGTGGCCGGGCGGACGGGCGGGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGA
66 ACGA---G-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * * * *
13208272 TCGATTGGGTAGTTGGTCGGTTTAGGCACATCTTCATATTTCTGCGTGCGAATGCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
* *
13208337 CCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTT
* ** * * * *
13208402 TTCTATTTTTCAAGATTTTTGAAACCTTTTGCGGTTCAGCATTTTTTAAAATTTTTTCGGAAGGA
257 TTCTATTTTTCATGATTTTCAAAACTTTTTGCGGATCGGGATTTTTTAAAATTTTTTCGGAAGGA
** * ** *
13208467 GTTTTGGCCCCAAACTTGGTAGTTGTGATCCTTGTATTTTTTTTGGCATGCACACAAAAGGTCAA
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
*
13208532 CTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * * *
13208597 CAATGGCTACTGGCAACAAACCTATAAAATCTGAAATGCTTTTTAAGGGGGAGTGAGTTCTCGAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
13208662 GTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGTG
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGTG
* ** * * *
13208727 CACCCCCCCCCCGGCCCCCGATCGCCGGAACTTCAGTGCCGTCGGTGAGGTTCTCCGATGATGCT
582 CA-CCCCCCACCGGCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCT
* * *
13208792 CCGGCGATGGTGCGCC-AGCGAAGAAAAATACGGCACCAGCACATGCCTAAGCCCAGCATGTGCT
646 CC-GCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCT
* * * * *
13208856 GTCGCAACCCTCAGTTCAGTTTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAAT
709 GCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
13208921 GAACTCCGTATGCCTAAGTCAACCGATGAAATGAGCGTGCGGGCGCTCGGTCAGCCAGAGGGGCG
774 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCGGTCGGCCAGAGGGGCA
*
13208986 GGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTTTGCATGCTGCCGATCCTACTACCG
839 GGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTTTGCATGCTGCCGATCCTACTACCA
* * * *
13209045 TAACCCTCAATCTGGTCTGATCTTAGACTAGGAATAAACTCCATATGCCTAAGCCAACCGATGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
13209110 ACGAGCGGGTGGGCAGGC-GGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGT-GATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
13209173 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCAAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
*
13209238 GTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCT
*
13209303 ATTTTTCATGATTTTCAAAACTTTTTGTGGATCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
261 ATTTTTCATGATTTTCAAAACTTTTTGCGGATCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * * * *
13209368 TGGCCCCAAACTTTGTAGACGCGATCCTTGTACTTTTTTTGCCATACACAAAAAAAATCAGCTAA
326 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
*
13209433 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAAT
391 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
13209498 GCCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCACGAGGTTT
456 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
13209563 GATGAGGGATAGGGGCCCAATATAAGGGCTAAGTACCAGCACCTATTGCACATC-A-TGTG---C
521 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGTGCACC
* ** * * * * * *
13209623 GCAAACC--CCCTCGATCGTCGGAACCCCAATGCCGCCTGTCAGGTTCTTCGATGATGCTTCGAT
586 CCCCACCGGCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG-C
* **
13209686 GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGTGCCCAGCATGTGCTGCCGCA
650 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCA
** *
13209751 ACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
715 ACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * ** * *
13209816 TGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAGGCGCTCAGTCGGCTAGAGGGGCAGGATGC
780 CGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCGGTCGGCCAGAGGGGCAGGATGC
* * * * ** * *
13209881 GAAAGCCAGGGATTGGCCGAGTCCCCCCCTGCATGCTGCCGATCCTGCTATCA
845 GCAAGCCAGGGATCGGTCGGGTCCCCCTTTGCATGCTGCCGATCCTACTACCA
** * * * * * * *
13209934 CAA-CCTTGGTTTGGTCCGATCTTAAATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
13209998 ACGA----GCGGACGTGCGGGCACGACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
13210059 TAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
13210124 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCT
* *
13210189 ATTTTTCATGATTTTCAAAACTTTTTGTGGATCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
261 ATTTTTCATGATTTTCAAAACTTTTTGCGGATCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * *
13210254 TGGCCCCAAACTTGGTAAACGTGATCGTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAA
326 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* *
13210319 AAACTCGAAGTGCATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
391 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
13210384 GGCTACTGGTAGCAAACCTGTAAAATATCAAATACTCTTTAA-GGGGTGTGAGTACTCGAGGTTT
456 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * **
13210448 GATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCCGCACA
521 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGTGCAC-
* * *
13210513 CCCCCACCGGCTTCCCTGATCGCC-GAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCC
585 CCCCCACCGGC--CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC
* * * * * *
13210577 ATCGATGGTGCCCCGATGAAGAAAAATGTGGCTCCAGCACATGCCCGAGCCCAGCATGTGCTGCT
648 -GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCC
* *
13210642 GCAACCCTCGGTCC-GATCCGATCTTAGACTGGGTATGAACT
712 GCAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACT
13210683 TTGTGTGCCT
Statistics
Matches: 2235, Mismatches: 271, Indels: 67
0.87 0.11 0.03
Matches are distributed among these distances:
884 6 0.00
885 104 0.05
886 350 0.16
887 2 0.00
888 54 0.02
889 258 0.12
890 1 0.00
891 19 0.01
892 545 0.24
893 13 0.01
894 131 0.06
895 14 0.01
896 2 0.00
897 406 0.18
898 37 0.02
899 10 0.00
900 1 0.00
903 282 0.13
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCT
ATTTTTCATGATTTTCAAAACTTTTTGCGGATCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGTGCACC
CCCCACCGGCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGCG
ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCGGTCGGCCAGAGGGGCAGGATGCG
CAAGCCAGGGATCGGTCGGGTCCCCCTTTGCATGCTGCCGATCCTACTACCA
Found at i:13209806 original size:26 final size:26
Alignment explanation
Indices: 13209770--13209822 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13209760 CCAGTCCAAT
13209770 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
13209796 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13209822 C
1 C
13209823 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13212285 original size:26 final size:26
Alignment explanation
Indices: 13212249--13212301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13212239 CTGATCTGAT
* *
13212249 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13212275 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13212301 C
1 C
13212302 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13212498 original size:4 final size:4
Alignment explanation
Indices: 13212481--13212510 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
13212471 GACGAAACGA
*
13212481 GCGG GCGA GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
13212511 ACTACGTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.27, G:0.70, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:13214978 original size:26 final size:26
Alignment explanation
Indices: 13214942--13214992 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13214932 GATCTGATCA
13214942 TAGACTGGGAATAAACACCGTATGCT
1 TAGACTGGGAATAAACACCGTATGCT
* *
13214968 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATAAACACCGTATGC
13214993 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATAAACACCGTATGCT
Found at i:13216775 original size:26 final size:26
Alignment explanation
Indices: 13216724--13216776 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13216714 CTAGTCCGAT
**
13216724 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13216750 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13216776 C
1 C
13216777 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13218170 original size:903 final size:899
Alignment explanation
Indices: 13211379--13227540 Score: 18675
Period size: 903 Copynumber: 18.2 Consensus size: 899
13211369 CTGGTCCGAT
* * *
13211379 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTGCGGGTGCTCAGC
** * ** *
13211444 CAACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * * * *
13211509 TACTACCACAACCCTCAG-TCTAGTCTTATCTTAGACTAGGAATGAACTCCGTATGCCAAAGCCA
130 TGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
13211573 ACCGACG-AA--A-C-GA-GCGGGTGGGCGGGCACTACGTCGGCTAGAGAGACGGGATTCGCAAG
194 ACCGACGAAACGAGCGGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
13211632 CTGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAC
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
13211697 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
13211762 ACTCGTTTTTTATTTTTCGTGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTCAAATTTTTTC
389 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT
* * * *
13211827 GGAAGTAGTTTTGGCCCCAAAATTGGTAGACCTGATCCTTGTATTTTTTTTGGCATGCATAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAA
*
13211892 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * *
13211957 AACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCATATGCTTTTTCAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
13212022 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCAACCATCTCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
13212087 ATGTGCGCACACCCCCCTAGCCCCCCCGATC-GCTGGAACCCCAATGCCGTCGATCAGGTTCTCC
713 ATGTGCGCACACCCCCC-GGCCCCCCCGATCATC-GGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * * * *
13212151 GGCGATGCTCCGACGATGGTGCCTCGACGAAGAAATATGCGGCACCAGCACATGCCCAAGCCCAG
776 GATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAG
* * * * * *
13212216 CATGTGCTGCCACAACCCTCGGTCTGATCTGATCTTAGACTGGGGATGAACTCCGTATG
841 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
* ** * *
13212275 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTAGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTGCGGGTGCTCAGC
* ** *
13212340 CAGCCAGAGGGGCGGGATGTACAAGCCGGGGATCGATCGGGTCCCCCTCTATGTGCTG-CGCATC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCG-ATC
* * *
13212404 CTGCTGTCGCAACCCT-AGTTCAGATC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
13212467 AACCGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGATG
193 AACCGACGAAACGAGC--G-GA-------GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * *
13212532 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATTTTCATAATTCTACGT
248 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
* *
13212597 GCCAATGCCATTTTTTTGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
313 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * *
13212662 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTC-GAAATTTTT
378 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * *
13212726 AAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
443 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGC
* * * *
13212791 ATGCACAAAAAACTTAAGCTAAAAACTAGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTG
507 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * *
13212856 TCCCCATTTTAGACACTTTAATGGCTGCTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAG
572 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
13212921 AGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
637 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
13212986 CATCGCACATCATCTGTGCACACCCCCGCGG-CCCCCCGTATCGTCGGAACCCCAACGACGCCGG
702 CATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCG-ATCATCGGAACCCCAATGCCGCCGG
* ** *
13213050 TCAGGTTCTCC---G--G-T-----GATGGT-ACCCGGGGAAGAAAAATACGGCACCAGCACATG
765 TCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATG
* * * * * *
13213103 CCCAAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACCGGGGATGAACTTC
830 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
*
13213168 GTATG
895 TTATG
* * ** * *
13213173 CTTAGACTGGGAATTAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTAGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTGCGGGTGCTCAGC
* * * *
13213238 CAGCCAGAGGGGCAGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTATGTGCTG-CGCATC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCG-ATC
* * *
13213302 CTGCT-TCACAACCCT-AGTT-GGATC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTGCTGCCGCAACCCTCGGTTCGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** *
13213363 AACCGA-TTAA--A-C-GA-GCGGGCGGGCGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAA
193 AACCGACGAAACGAGCGGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
13213422 GCCGTGGATCGATAGGGTGGTAGGTGGATTTGGGCACATCTTCATATTTCTACGTGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* *
13213487 TTTTTTTGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** *
13213552 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** * ** *
13213617 CAGAAGCAGTTTTCACCCCAAACTTGGCAGACGTGATCCTTGTATTTTTCTTGGCATGCAC-AAA
453 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAA
*
13213681 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
13213746 AAACACTTTTATAGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
13213811 TTCTTGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
13213876 CATGTGCGCACACCCCCTCGGCCCCCCCAATCATTAGG-ACCCCAATGTCGTCGGTCAGGTTCTC
712 CATGTGCGCACACCCCC-CGGCCCCCCCGATCA-TCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** * * ** * * *
13213940 TGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGATAGCAGCACGTGCCCGAGCCCA
775 CGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCA
* * * * * * *
13214005 GCATGTGCTACCACAACCATCGGTCTGGTCTGATCTTAGAGTGGGAATGAACTCCATATG
840 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
* * * *
13214065 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CAGCGTGCGGGTGCTCAGC
* ** * * *
13214130 CGACCAGAGGGGCGGGATGTACAAGCTGGGGATCGA-CTGGGTCCCCCTCTGCGTGCTACCGATC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTACGTGCTGCCGATC
** * ** * *
13214194 CAACTGCCACAACCCTCAATCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * * **
13214258 ACCGATCTTAGAC-TG-GGA-ATGAGCGGGCGGGCACTACACTAGCCAGAGAGACGGGATGCGCA
194 ACCGA-C-GAAACGAGCGGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
13214320 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGCATGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
*
13214385 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
13214450 TGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGAATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
** * * **
13214515 TCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTTTGGCATGCGTAAAA
452 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAA
* * *
13214580 AAATTCAGCTAAAAACTCGAGGTGTATAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTT
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTT
* *
13214645 CAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
13214710 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
13214775 TCATGTGCGCACACCCCCACACGGCCTCCCCGATCATCGGAACCCCAAAGCCGCCGGTCAGGTTC
711 TCATGTGCGCACA-CCCC-C-CGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTC
** ** * * ** * *
13214840 TCCGACAATGCTTTG-TGATGGTGCGCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCC
773 TCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCC
* * * * * * * * * *
13214904 CAGCATGTGTTGCCGCAACTCTCGATCTGATCTGATCATAGACTGGGAATAAACACCGTATG
838 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
* ** **
13214966 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCACTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTGCGGGTGCTCAGC
* * * ** * *
13215031 CTGCCAGAGGGACGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCCTCTACGTGCTGCCGATCT
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * * * * *
13215096 TGCTACCGTAACCCTCAGTTTGGT-TCAATCTTAGATTAGGAATGAACTACTTATGCCTAAGCCA
130 TGCTGCCGCAACCCTCGGTTCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
13215160 ATCAACGAAACGAGCGGACGGGCAGGTGGGCAGGCACTACGCCTGCTAGAGAGACGGGATGCGCA
194 ACCGACGAAACGAGCGGA--GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
13215225 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
13215290 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
13215355 CGACTGGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGA-GGTTCAAGATTTTTTTAAATTTT
387 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTT
* *
13215419 TTCGGAAGGAG-TTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
451 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAA
* * *
13215483 AAAAATTCCGCTAAAAACGCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
13215548 TCAGACACTTTCATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13215613 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *** * * * *
13215678 ATCGTGTGCACACCCCCCCTCGGCCCCGCCCGATTGCCGGGACCCTAATGCCGTCGATCAGGTTC
710 ATCATGTGCGCACACCCCC-CGGCCCC-CCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTC
* ** ** * * *
13215743 TCTGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCC
773 TCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCC
* ** * * * *
13215808 TAGCATGTTTTACTGTAACCCT---T--GGT-C---C--AG--T----CTG-A-T-C--A--
838 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
* * *
13215846 --AAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTGCGGGTGCTCAGC
* * * * * * *
13215909 CGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGATCGGGTCCCCTTCTGCATG-TCGTCAATC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCT-GCCGATC
** * * * *
13215973 CTGCTGCCATAACCCTCGGTTTGAT-TGGATCTTAGACTGGGAATGAACTTCGTATGCCTAATCC
129 CTGCTGCCGCAACCCTCGGTTCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
13216037 AACCGATGAAACGAGCGGGTGGGTGGGCGGGAGGGCACTATGCCGGTCGGAGAGACGGGATGCGC
193 AACCGACGAAACGAGC-GG-AGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
13216102 AAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* * *
13216167 CATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTGAAGCCTTCACGTGAATTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** *
13216232 ACGACTCATTTTCTATTTTTTATGATTTTCAAAACTTTTTACTGTTCGGGATTTTTTATAAAATT
386 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTT-TAAAATT
* * * *
13216297 TTTTCGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCAC
449 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC
*
13216362 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCA
513 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
13216427 TTTCAAACACTTTAATAGCTACTGGCAGCAAAGCTATAAAATCTCAAATGCTCTTTAGGGGGGTG
578 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
13216492 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGC
643 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
13216557 ACATCATGTGCGCACACCCCCCTCGG-CCCCCTGATCGTCGGAACCCTATTGCCACCGGTCAGGT
708 ACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGT
* **
13216621 TCTCC-AGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCGGCACATGCCCGA
771 TCTCCGA-TGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGA
* * **
13216685 GCCCAACATGTGCTGCCGCAACCATCGGTCTAGTCCGATCTTAGACTGGGAATGAACT-CTGTAT
835 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCT-TAT
13216749 G
899 G
* ** * *
13216750 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCGTGAAACTAGCGTTCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTGCGGGTGCTCAGC
* * * ** * * *
13216815 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCTTCTATATGCTGTCGAGCT
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
** * ** * * *
13216880 TGCCACCGTAACCCTCGG-TCTAAT-TGGATCTTAGACTAGGAATGAACTCCATATGCCTAATCC
130 TGCTGCCGCAACCCTCGGTTC-GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
13216943 AATCGACGAAACGAGC-G-GGCAGGCGGGCGGGCACTATGCCGGTCGGAGAGACGGGATGCGCAA
193 AACCGACGAAACGAGCGGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
13217006 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCGGCGTGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
13217071 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
13217136 GACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTGA-TGTTCGGGATTTTTTAAAATTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTT
** * * *
13217200 TTGGAAATAGTTTTGGCCCCAAACCTGGTAGACGTGATCAC-TCTAGTTTTGTTGGCATGCACAA
452 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTA-TTTTTTTGGCATGCACAA
*
13217264 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
13217329 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTACGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* **
13217394 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTTAGTACCAGCACCCATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
13217459 ATCATGTGCGCAAACCCCCCAGCCCCCCCGATCATTGGAACCCCAATGCCGCCGGTCAGGTTCTT
710 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
13217524 CAATGATGCTTCGACGATGGTGCCCTGACGAAGAAAAATACGGCACCAACACATGCCTGAGCCCA
775 CGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCA
* * *
13217589 GCATGTGCTGCCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCTTATG
840 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
* ** * *
13217649 CTTAGGCTAAGAATGAACTCTGTATGCATAAGTCAACCCACGAAACACGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA-GCGTGCGGGTGCTCAGC
* * * * *
13217714 CGGCCAGAGGGGCAGGATGTGCAAGCTGGGGATCGATCGGGTCCCCATCTACGTGCTACCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
13217779 TGCTGCTGTAACCCTCAGTTCGGTCTGATCTTAGACTGTGAATGAACTCCGTTTACCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
13217844 CTGACGAAACGGGCGGATAGGCGGGCAGGCGGGCACTACACCGGCTAGAGAGACGGGATGCACAA
195 CCGACGAAACGAGCGG--AGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
13217909 GCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATACCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* *
13217974 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAATTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
13218039 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
13218104 TGGAAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTTTTGGCATTCACAAAA
453 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAA
* * *
13218169 AACTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
13218234 AGACACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
** * * * * *
13218299 TTCTTAAGGTTTGATGAGGGATAGGCGCCCAATGTAAGAGCCAAGTACCAGCACCCATCTCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * **
13218364 CATGTGTGCACACCCCCCTCGGCCCCCCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
712 CATGTGCGCACA-CCCCC-CGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
13218429 CGACGATGATCCGATGATGGTGCCTCGACGAAGAAAAATACGGCACCAACACATGCTCGAGCCCA
775 CGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCA
*
13218494 GCATGTGCTGCCGCAATCCTCGGTCCGGTCCGATC-T----T----A-G--------A--
840 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
* * * *
13218534 --T----TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CAGCGTGCGGGTGCTCAGC
** * * ** ** *
13218593 CGGCCAGAGGGGCGGGATGCATAAGTCAGGGATCGGCCAAGTCCCCCTCTGCGTGCTGCCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
13218658 TGCTACCGCAACCCTTGGCCTC-GTCTAATCTTAGACTGGGAATGAACTCCGTTTACCTAAGCCA
130 TGCTGCCGCAACCCTCGG-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * * *
13218722 ACTAACGAAACGAGCAGACGGGGGGCGGGTGGGCACTACACCGGCCAGAGAGACGGCATGCGCAA
194 ACCGACGAAACGAGCGGA-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
13218787 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * *
13218852 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACATAAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
13218917 AACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTTAAAATATTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTT
* * * *
13218982 TCGGAAAGATTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
452 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAA
* *
13219047 AAAATTCAG-TCAAAAACTCGAAATGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATT
516 AAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
13219111 TCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13219176 AGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCA-CCATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * * * * *
13219240 ATCATTTGCTG-ACAACCCCCCGG-CCCCTTGATCACCGAAACCCCAATACCGTCGGTTAGGTCC
710 ATCATGTGC-GCAC-ACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTC
* * ** * **
13219303 TCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCAAAGCC
773 TCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCC
* * * * * * *
13219368 CATCATGTGCTGCCACATCCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATG
838 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
* * *
13219430 CTTAGACTAGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGGGTGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTGCGGGTGCTCAGC
* * * * *
13219495 CTGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTACGTGCTGCCAATCT
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
13219559 TGTTGCTGTAACCCTCGG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
13219623 ACCGACGAAACGAGCGGGCGGGCGGGCAGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
194 ACCGACGAAACGAGC-GG-AGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
13219688 AGCCGTTGATCGATAGCGTGGTAGGTGGATTTAGGAACATCTTCATATTTCTGCATGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
13219753 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTAATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * **
13219818 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
13219883 TTGGAAGGAGTTTTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAA
452 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAA
* *
13219948 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCTATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
13220013 CAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
13220078 GTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGTACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** * * *
13220143 TTATGTGCGCACACCCCCCTGGCCCCTCCGATC-GGGGAACCCCAATGCCGTCGATCAGGTCCT-
711 TCATGTGCGCACACCCCCC-GGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * ** * *
13220206 CTAGCGATGCTCTAACAATGGTGCCCCGACGAAGAAAAATATGGCACCAACACATGCCCGAGCCC
775 CGA-TGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCC
* * * * *
13220271 ATCATGTGCTGCCGCAGCCCTTGGTCCGGTCCAATCTTAGATTGGGAATGAACTTCGTATGCTTA
839 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC-TC-----C---
13220336 TAATAGGAATG
895 T--T----ATG
* * *
13220347 AACTCCGTATGCTTATAATAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
1 --CT---TA-G-----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CAGCGTGC
* * * * ** * **
13220412 GGGTGGTCAGCCGGCCAGAGGGACGGGATGCGTAAGCCGGGTATCGGCCGGGTCCCTCTCTGTGT
54 GGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGT
* * * *** *
13220477 GCTGCCAATCTTGTTGCTATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
119 GCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * *
13220542 GCCTAAGCCAACCGACGAAACGAGC--A----GGCGGGTGGGCACTACGTCGGCCAAGAGAGACA
184 GCCTAAGCCAACCGACGAAACGAGCGGAGGCGGGCGGGCGGGCACTACGCCGGCC-AGAGAGACG
* * * * *
13220601 GGATGCGCAAGTCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTGTGCTT
248 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
** *
13220666 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATACTTCACGTGAAGTTTA
313 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
13220731 ATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTT
378 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* ** * *
13220796 TAAATTTTTTCAGAAGGAGTTCTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
443 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGC
** * *
13220861 ATGCACAAAAAAATTTTGCTAAAAACTCGAAATGTACTAGATTTTGTGACCATTTGAAAAAAGTG
507 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * *
13220926 TCCGCATTTCAAACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAG
572 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
13220991 GAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
637 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * **
13221056 CATCGCACATCATGTGCGCACACCCCCCGGCCCACCCGATCGTCAAAACCCCAATGCCGCCGGTC
702 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTC
* ** * *
13221121 AGGTTCTCCGATGATGCTCCGGCGATGGTGCCTGGACGAAGAAAAATGCAGCACCAACACATGCC
767 AGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCC
* * ** * *
13221186 CAAGCCCAGCATGTGCTGCCGCCACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
832 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTT
13221251 ATG
897 ATG
* * *
13221254 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-CTAACCCACGAAACGAGCGTTCGGGCGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAAC-AGCGTGCGGGTGCTCAG
* * * * **
13221318 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGTTCGGTCAGGTCCCCCTCTGTGTGCTGCCGATC
64 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATC
* * * * * *
13221383 CTGCTACCGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAGCCA
129 CTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
13221448 ACCGACGAAACGAGCAGGAGGGTGAGAGGGTGGGCGGGCACTACGCCGGCTAGAGAGACGGGATG
194 ACCGACGAAACGAGC-GGA----G-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * * *
13221513 TGCAAGCCATTGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
253 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
13221578 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
318 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * *
13221643 AAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTGTTGA-GGTTCGGGATGTTTTAAAT
383 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT-TTTACGGTTCGGGATTTTTTAAAA
** * *
13221707 TTTTTTTGGAAATAGTTTTGACCCCAAACCTGGTAGACGTGATCAC-TGTATTTTTTTTGGCATG
447 TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTA-TTTTTTTGGCATG
* * *
13221771 CAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTATCC
510 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * * *
13221836 CCATTTCAGACACTTAAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTATAAGTGG
575 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
13221901 GTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCAT
640 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * *
13221966 CGCACATCATGTGCGCACACCCCCCCGGGGCCCCCCGATCACCGGAA-ACAAATGCCGTCGATCA
705 CGCACATCATGTGCGCACA-CCCCCC-GGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCA
* ** * *
13222030 GGTTCTCCGGTGATGCTTTGATGATGGTGCCCCGGCGAAGAAAAATACGGCACCAACACATGCCC
768 GGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCC
* * ** *
13222095 GGGCCTAGCATGTGCTATCGTAA----C--T-CGGTCCGA---T----T-----TG--------A
833 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTA
13222133 T-
898 TG
*
13222134 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTGCGGGTGCTCAGC
* * * *
13222199 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAATCGGGTCCCCTTCTATGTGCTACCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
13222264 TGCTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13222329 CCGACGAAACGAGCGGA--CGGGCGGGCGGGCACTACACCGCCCAGAGAAACGGGATGCACAAGC
195 CCGACGAAACGAGCGGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * ** *
13222392 CATGGATCGATAGGGTAGTAGGTGGGTTTAGGCGTATCTTCATATTTCTACGTGCCAATG-CATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA-T
* * **
13222456 TTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGGTG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
13222521 ACTCGTTTTTTATTTTTTATGATTTTTGAAACTTTTTTCTGTTCGGGATTTTTTAAAATTTTTTT
389 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT
* * * * *
13222586 CGAAAGAGTTTTGGCACCAAACTTGGTAGATGTGATCCTTGTATTTTTTTGGCATGCACAAAATA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAA
* * * *
13222651 ATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCTTTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
13222716 ACACTTTAATCGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** *
13222781 CTCGAGGTTTGATGAGGGATAGAGGGGCCAATATAAGGGTGAAGTACTAGCACCCATCGCACATC
649 CTCGAGGTTTGATGAGGGATAG-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * ** *** * *
13222846 ATGTGCAAACACCCCACCGACCCCCTTGATTGCCAGAACCCCAATGCCGGCGGTCAGGTTCTCCG
713 ATGTGCGCACACCCC-CCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * * * *
13222911 ACGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGGCTGAGCCCAAC
777 ATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGC
* * * * * * *
13222976 ATGTGCTGCTGCAACCCTCAGTCCAGTCC-ACTTTTAGACTGGGAATGAACTTCGTATT
842 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGA-TCTTAGACTGGGAATGAACTCCTTATG
* *
13223034 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CAGCGTGCGGGTGCTCAGC
* * * * * *
13223099 CGGCCAGAGGGGCAGGATTCGCAAGTCGGGGATCGATCGAGTCCCCCTCTACATGCTGTCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * ** * * *
13223164 TGCTACCGCAACCCTCAG-TCTGGTCCAATCTTAAACTGGGAATGAGCTCCATATGCCTAAGCCA
130 TGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * * *
13223228 ACTGACAAAACGAGCGGGCGGACAAGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCACA
194 ACCGACGAAACGAGC-GGAGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
13223293 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * * *
13223358 A-TTTTATGGCTTGTAAATTCCTACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTAATCGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
13223422 CAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCAGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
13223487 TCGGAAGGTGTTTTGGCCTCAAATTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAA
452 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAA
* *
13223552 AAATTCAGCTAAAAACTCCAAGTGTACACA-ATTTTGTGACCATTTGAAAAAAGGGTCCCCATTT
517 AAATTCAGCTAAAAACTCGAAGTGTACA-AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
13223616 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** * *
13223681 GTTCTCGAGGTTTGATGAGGGATAGGGGGTGAATATAAGGGCCAAGTACCAGCACCCATCACAGA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * ** * *
13223746 TCATGAGCGCACACCCCCTGACCCCCCCGATCGTCGGAATCGTAATGTCACCGGTCAGGTTCT-C
711 TCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
13223810 --T-A-G-T-----GATGGTGCCCCGACGAAGAAAAATGCTGCACCAACACATGCTCGAGCCCAG
776 GATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAG
** * *
13223865 CATGTGCTGTTGCAACCCTCAGTCTGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
841 CATGTGCTGCCGCAACCCTC-G---G-TCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
* * * *
13223929 CTTAGACT-GGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACAAGCGTACGGTTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTGCGGGTGCTCAGC
* ** * ** ** *
13223993 CAGCCAGAGGGGCGGGATGCGCAAGTTGAGGATCGGCCGCTTCCCCCTCTACGTGCTGCCAATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
13224058 TGCTGCCACAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCGA
130 TGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* **
13224123 CCGAC-AAA--A--TGA-GCGGGCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGC
195 CCGACGAAACGAGCGGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
13224182 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* *
13224247 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACAA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
13224312 CTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTCTTCG
390 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
*
13224377 GAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAA
* * * * *
13224442 ATTCATCTACAAACTCGAAGTGTACAGGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAA
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
13224507 ACACTTTAATGGTTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
13224572 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
13224637 TGTGCGCACACCCCCCCCGGCCCCCTCGATCATCGGAACCCCAACGCCGTCGGTCAGGTTCTCCG
714 TGTGCGCACA--CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
13224702 ACGATGCTCCGACGATGGTAG-CCTGACGAAGAAAAAT---G---C--GACA---CC-AG--C-G
777 ATGATGCTCCGACGATGGT-GCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAG
* * *
13224751 CATG-ACTACCGCAACCCTCAGTCC-G---G----T----T-----T--A------AT-
841 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
* * * *
13224783 CTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTGCGGGTGCTCAGC
* * * * * * **
13224848 CGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGACCTGGTCCCCCTCTGCATGCTGTGGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
13224913 TGCTGCCACAACCCTCAG-TCTGGTCTAATCTTAGATTGAGAATGAAACTCCGTATGCCTAAGCC
130 TGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATG-AACTCCGTATGCCTAAGCC
* *
13224977 AACCGACG-AA--A--GGA-GTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
193 AACCGACGAAACGAGCGGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*** *
13225036 GTTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
13225101 TTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13225166 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTTAAATTTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
13225231 TTGAAGGATTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
453 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAA
13225296 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
13225361 AGACACTTTAATAGCTACT-G--GC--A---G--------CAAA--C-C----------TGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
13225397 TTCTCGAGGTTTGATGAAGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCACACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
13225462 CATGT-CTGCACACCCCCCCGACCCCCCCGATCATCGGAACCTCAATGCCGCCAGTCA-G-----
712 CATGTGC-GCACA-CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * ** * *
13225520 -G-T--T-CTCCGACGATAGTGCCCAGGGGAAGAAAAATACGGTGCCAACAACACATGCCTGAGC
775 CGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAC-G-G-CACCAACACATGCCCGAGC
* *
13225580 CCAGCATGTGCTGTCGCAACCCTCGATCCGGTCCGATC-T----T----A-G--------A--
837 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
* * *
13225623 --T----TGGGAACGAACTCCGTATGCCTAAGTGAACCCACGAAATTAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CAGCGTGCGGGTGCTCAGC
* * *
13225682 CGACCAGAGGGGC-AGATGTGCAAGCCGGGGATCGA-CTGGGTCCCCCTCT--GTG-T---G---
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTACGTGCTGCCGATC
* * * * *
13225736 CTG-T--AG--ATCCT--G--CTG-C-CA--TT-GA-T-----TGAACTCCGTATACCTAAGCCA
129 CTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * * * * * * *
13225781 TTCGATGAAACGA-CGGGTGGCCAGGCGGGCTGGCACTACGCCGACCAAAGAGACGTGATGTGTA
194 ACCGACGAAACGAGC-GGAGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
13225845 AGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATTCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * *
13225910 ATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTTACGTGAAGTTTAATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
13225975 TGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTACGATTTGGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
13226039 TTGGAAGGAGTTTTGGCCCCAACCTTGGAAGACATGATCCTTGTATTTTGGTTGGCATGCAAAAA
452 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TTTGGCATGC-ACAA
*
13226104 AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
13226169 TCAAACACTTAAATTGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13226234 AGTTCTCGACGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
13226299 ATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAACGCTGTCGGTCAGGTTCTC
710 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * * * * * * * *
13226364 TAATGATGCTCTGGCGTTGGTGCCCCGACGAAGAATAATGCGACACCAGCACATGACCGAGCCCA
775 CGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCA
* *
13226429 GCATGTGCTGTCGCAACCCTCAGTCC--T--G-TC-----C------TG-A-T-CTTA-G
840 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
*
13226469 ACTT-G--T---AATGAACTTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 -CTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTGCGGGTGCTCA
* * * * * * * * *
13226528 ACCGACCCGAGGGGCAGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCATCTGCGTGCTACCGAT
63 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGAT
* * * * *
13226593 CCTGCTGCCGTAACCCTTGG-TCTGGGCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
128 CCTGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * **
13226657 CAACCGACGAAATGA---GA-------GGGCAGGCATTACGCCGGCCAGAGAGACGGGATGCTTA
192 CAACCGACGAAACGAGCGGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
13226712 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTTTGC-TACCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
*
13226776 ATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
13226841 CAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTCTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
13226906 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCACAAA
452 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAA
* * *
13226971 AAAATTCAGCCAACAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
13227036 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
13227101 GTTCTCGAGGTTTAATGAGGGATAGCGGGCCAAGATAAGTGCCAAGTAGCAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
13227166 TCATGTGCGCACACCCCCTGACCCCTCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCC
711 TCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
13227231 GATGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCCCCAACACATGCCCGAGCCCTG
776 GATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAG
* * * * * * *
13227296 CATGTGCTGTCGTAACTCTCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
841 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
* * * *
13227355 TTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACAAGCATACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTGCGGGTGCTCAGC
* * * * *
13227420 CAGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGA-CAGGGTCCCCTTCTACGTGTTGCTGATC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTACGTGCTGCCGATC
* * * *
13227484 CTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
129 CTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
13227541 TTAGACTAGG
Statistics
Matches: 13202, Mismatches: 1612, Indels: 910
0.84 0.10 0.06
Matches are distributed among these distances:
803 23 0.00
804 4 0.00
806 1 0.00
808 6 0.00
809 77 0.01
810 272 0.02
811 3 0.00
813 3 0.00
814 2 0.00
815 27 0.00
816 2 0.00
817 1 0.00
818 1 0.00
819 5 0.00
820 1 0.00
823 1 0.00
824 4 0.00
825 1 0.00
826 47 0.00
827 76 0.01
828 1 0.00
829 2 0.00
830 3 0.00
831 2 0.00
832 2 0.00
833 35 0.00
834 76 0.01
835 1 0.00
837 1 0.00
838 39 0.00
839 76 0.01
840 6 0.00
841 5 0.00
842 1 0.00
844 1 0.00
845 1 0.00
846 43 0.00
847 6 0.00
848 56 0.00
849 56 0.00
850 2 0.00
851 4 0.00
852 1 0.00
853 2 0.00
854 9 0.00
855 139 0.01
856 383 0.03
857 5 0.00
858 3 0.00
859 1 0.00
861 2 0.00
863 5 0.00
865 1 0.00
866 420 0.03
867 155 0.01
868 7 0.00
869 1 0.00
870 1 0.00
871 184 0.01
872 378 0.03
873 1 0.00
875 1 0.00
876 122 0.01
877 7 0.00
878 639 0.05
879 421 0.03
880 746 0.06
881 331 0.03
882 13 0.00
883 4 0.00
884 2 0.00
885 20 0.00
886 115 0.01
887 172 0.01
888 209 0.02
889 6 0.00
890 243 0.02
891 22 0.00
892 194 0.01
893 21 0.00
894 198 0.01
895 107 0.01
896 358 0.03
897 18 0.00
898 239 0.02
899 656 0.05
900 583 0.04
901 639 0.05
902 781 0.06
903 831 0.06
904 339 0.03
905 427 0.03
906 177 0.01
907 436 0.03
908 119 0.01
909 26 0.00
910 292 0.02
911 205 0.02
913 1 0.00
916 1 0.00
917 3 0.00
919 2 0.00
921 39 0.00
922 574 0.04
923 3 0.00
928 92 0.01
929 93 0.01
930 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAGCGTGCGGGTGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCT
GCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGA
TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATG
Found at i:13219442 original size:26 final size:26
Alignment explanation
Indices: 13219404--13219456 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13219394 CCGGTCTGAT
*
13219404 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
13219430 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
13219456 C
1 C
13219457 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13220280 original size:902 final size:899
Alignment explanation
Indices: 13218528--13227540 Score: 10102
Period size: 922 Copynumber: 10.2 Consensus size: 899
13218518 CCGGTCCGAT
* * * * *
13218528 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
** * * * ** *
13218593 CGGCCAGAGGGGCGGGATGCATAAGTCAGGGATCGGCCAAGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTACGTGCTGCCGATCC
* * * * * * *
13218658 TGCTACCGCAACCCTTGGCCTCGTCTAATCTTAGACTGGGAATGAACTCCGTTTACCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
13218723 CTAACGAAACGAGCAGACGGG-GGGCGGGTGGGCACTACACCGGCCAGAGAGACGGCATGCGCAA
195 CCGACGAAACGAGCGGGCGGGCGGGC-GG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
13218787 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * *
13218852 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACATAAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** * *
13218917 AACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTTAAAATATTT
388 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGA-TTTTTTAAAATTTTT
* * * * *
13218982 TCGGAAAGATTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
452 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
13219047 AAAATTCAG-TCAAAAACTCGAAATGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATT
517 AAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
13219111 TCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13219176 AGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCA-CCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** ** * * * *
13219240 ATCATTTGCTG-ACAACCCCCC-GGCCCCTTGATCACCGAAACCCCAATACCGTCGGTTAGGTCC
711 ATCATGTGC-GCAC-ACCCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* ** **
13219303 TCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCAAAGCC
774 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* * *
13219368 CATCATGTGCTGCCACATCCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATG
839 CAGCATGTGCTGCCGCAACCCTTGATCCGGTC-GATCTTAGACTGGGAATGAACTCCATATG
* * *
13219430 CTTAGACTAGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGGGTGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
13219495 CTGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTCTACGTGCTGCCAATCTT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTCTACGTGCTGCCGATCCT
* * * *
13219560 GTTGCTGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
13219625 CGACGAAACGAGCGGGCGGGCGGGCAGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
196 CGACGAAACGAGCGGGCGGGCGGGC-GG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * *
13219690 CCGTTGATCGATAGCGTGGTAGGTGGATTTAGGAACATCTTCATATTTCTGCATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* *
13219755 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTAATGGCAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* **
13219820 ACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTT
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTT
* *
13219885 GGAAGGAGTTTTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
13219950 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCTATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
13220015 GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
13220080 TCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGTACATT
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
13220145 ATGTGCGCACACCCCCCTGGCCCCTCCGATCG-GGGAACCCCAATGCCGTCGATCAGGTCCT-CT
714 ATGTGCGCACACCCCCCTGGCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
** * ** *
13220208 AGCGATGCTCTAACAATGGTGCCCCGACGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAT
778 A-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* * * *
13220273 CATGTGCTGCCGCAGCCCTTGGTCCGGTCCAATCTTAGATTGGGAATGAACTTCGTATGCTTATA
842 CATGTGCTGCCGCAACCCTTGATCCGGT-CGATCTTAGACTGGGAATGAAC-TC-----C-----
13220338 ATAGGAATG
895 AT----ATG
* * *
13220347 AACTCCGTATGCTTATAATAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
1 --CT---TA-G-----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * **
13220412 GGGTGGTCAGCCGGCCAGAGGGACGGGATGCGTAAGCCGGGTATCGGCCGGGTCCCTCTCTGTGT
55 GGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC-CTCTACGT
* * * *** *
13220477 GCTGCCAATCTTGTTGCTATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
119 GCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
13220542 GCCTAAGCCAACCGACGAAACGA----GCAGGC-GG-GTGGGCACTACGTCGGCCAAGAGAGACA
184 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCGGCC-AGAGAGACG
* * * * *
13220601 GGATGCGCAAGTCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTGTGCTT
248 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
** *
13220666 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATACTTCACGTGAAGTTTA
313 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
*
13220731 ATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTT
378 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTT
* ** * * *
13220796 TAAATTTTTTCAGAAGGAGTTCTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
443 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC
** * *
13220861 ATGCACAAAAAAATTTTGCTAAAAACTCGAAATGTACTAGATTTTGTGACCATTTGAAAAAAGTG
508 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * *
13220926 TCCGCATTTCAAACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAG
573 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
13220991 GAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
638 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
** *
13221056 CATCGCACATCATGTGCGCACACCCCCC-GGCCCACCCGATCGTCAAAACCCCAATGCCGCCGGT
703 CATCGCACATCATGTGCGCACACCCCCCTGGCCC-CCCGATCGTCGGAACCCCAATGCCGTCGGT
* * ** *
13221120 CAGGTTCTCCGATGATGCTCCGGCGATGGTGCCTGGACGAAGAAAAATGCAGCACCAACACATGC
767 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGC
* * ** *
13221185 CCAAGCCCAGCATGTGCTGCCGCCACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCG
832 CCGAGCCCAGCATGTGCTGCCGCAACCCTTGATCCGGTC-GATCTTAGACTGGGAATGAACTCCA
13221250 TATG
896 TATG
* * *
13221254 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-CTAACCCACGAAACGAGCGTTCGGGCGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * **
13221318 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGTTCGGTCAGGTCCCCCTCTGTGTGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTACGTGCTGCCGATC
* * ** * *
13221383 CTGCTACCGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAGCCA
129 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
13221448 ACCGACGAAACGAGCAGGAGGGTGAGAGGGTGGGCGGGCACTACGCCGGCTAGAGAGACGGGATG
194 ACCGACGAAACGAGC-GG-GCG-G-GCGGG-CGG-GGGCACTACGCCGGCCAGAGAGACGGGATG
* * * * *
13221513 TGCAAGCCATTGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
253 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
13221578 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
318 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * *
13221643 AAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTGTTGAGGTTCGGGATGTTTTAAATT
383 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAAT
** * *
13221708 TTTTTTGGAAATAGTTTTGACCCCAAACCTGGTAGACGTGATCAC-TGTATTTTTTTTGGCATGC
448 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTATTTTTTTTGGCATGC
* * *
13221772 AAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTATCCC
512 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * * *
13221837 CATTTCAGACACTTAAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTATAAGTGGG
577 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
13221902 TGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATC
642 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** * * *
13221967 GCACATCATGTGCGCACACCCCCCCGGGGCCCCCCGATCACCGGAA-ACAAATGCCGTCGATCAG
707 GCACATCATGTGCGCACA-CCCCCC-TGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
** ** * * *
13222031 GTTCTCCGGTGATGCTTTGATGATGGTGCCCCGGCGAAGAAAAATACGGCACCAACACATGCCCG
770 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCG
* * ** * *
13222096 GGCCTAGCATGTGCTATCGTAA--C----T-CGGTC---C---GA-T-----T----T---GAT-
835 AGCCCAGCATGTGCTGCCGCAACCCTTGATCCGGTCGATCTTAGACTGGGAATGAACTCCATATG
*
13222134 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
** * *
13222199 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAATCGGGTCCCCTTCTATGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC-TCTACGTGCTGCCGATCC
* ** *
13222264 TGCTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13222329 CCGACGAAACGAGCGGACGGGCGGGC--GGGCACTACACCGCCCAGAGAAACGGGATGCACAAGC
195 CCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * ** *
13222392 CATGGATCGATAGGGTAGTAGGTGGGTTTAGGCGTATCTTCATATTTCTACGTGCCAATG-CATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA-T
* * **
13222456 TTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGGTG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * ***
13222521 ACTCGTTTTTTATTTTTTATGATTTTTGAAACTTTTTTCTGTTCGGGATTTTTTAAAATTTTTTT
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTT
* * * * *
13222586 CGAAAGAGTTTTGGCACCAAACTTGGTAGATGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAT
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * * *
13222650 AATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCTTTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
13222715 GACACTTTAATCGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** *
13222780 TCTCGAGGTTTGATGAGGGATAGAGGGGCCAATATAAGGGTGAAGTACTAGCACCCATCGCACAT
649 TCTCGAGGTTTGATGAGGGATAG-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * * * * *
13222845 CATGTGCAAACACCCCACC-GACCCCCTTGATTGCCAGAACCCCAATGCCGGCGGTCAGGTTCTC
713 CATGTGCGCACACCCC-CCTGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * *
13222909 CGACGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGGCTGAGCCCA
776 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* * * * * * * * *
13222974 ACATGTGCTGCTGCAACCC-TCAGTCCAGTCCACTTTTAGACTGGGAATGAACTTCGTATT
841 GCATGTGCTGCCGCAACCCTTGA-TCCGGTCGA-TCTTAGACTGGGAATGAACTCCATATG
* *
13223034 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * *
13223099 CGGCCAGAGGGGCAGGATTCGCAAGTCGGGGATCGATCGAGTCCCCCTCTACATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTACGTGCTGCCGATCC
* * ** * * *
13223164 TGCTACCGCAACCCTCAGTCTGGTCCAATCTTAAACTGGGAATGAGCTCCATATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * * *
13223229 CTGACAAAACGAGCGGGCGGACAAGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCACAA
195 CCGACGAAACGAGCGGGCGGGCGGGC-GG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
13223294 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * * *
13223359 -TTTTATGGCTTGTAAATTCCTACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTAATCGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13223423 AACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCAGGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTT
* * * *
13223488 CGGAAGGTGTTTTGGCCTCAAATTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAA
453 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
13223552 AAATTCAGCTAAAAACTCCAAGTGTACACA-ATTTTGTGACCATTTGAAAAAAGGGTCCCCATTT
518 AAATTCAGCTAAAAACTCGAAGTGTACA-AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
13223616 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** * *
13223681 GTTCTCGAGGTTTGATGAGGGATAGGGGGTGAATATAAGGGCCAAGTACCAGCACCCATCACAGA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * ** * **
13223746 TCATGAGCGCACA-CCCCCTGACCCCCCCGATCGTCGGAATCGTAATGTCACCGGTCAGGTTCT-
712 TCATGTGCGCACACCCCCCTG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * *
13223809 ---CTA-G-T-----GATGGTGCCCCGACGAAGAAAAATGCTGCACCAACACATGCTCGAGCCCA
776 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
** * *
13223864 GCATGTGCTGTTGCAACCCTCAGTCTGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
841 GCATGTGCTGCCGCAA-CC-C--T-TGATCCGGT-CGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
13223929 CTTAGACT-GGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACAAGCGTACGGTTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* ** * * ** *
13223993 CAGCCAGAGGGGCGGGATGCGCAAGTTGAGGATCGGCCGCTTCCCCCTCTACGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTACGTGCTGCCGATCC
* * * * *
13224058 TGCTGCCACAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCGA
130 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * **
13224123 CCGAC-AAA--A-TGAGCGGGCGGGC--GGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGC
195 CCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
13224182 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* *
13224247 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACAA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** * *
13224312 CTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTCTTCG
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTTG
* *
13224377 GAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* * * * *
13224442 ATTCATCTACAAACTCGAAGTGTACAGGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAA
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
13224507 ACACTTTAATGGTTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
13224572 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
13224637 TGTGCGCACACCCCCCCCGGCCCCCTCGATCATCGGAACCCCAACGCCGTCGGTCAGGTTCTCCG
715 TGTGCGCACA-CCCCCCTGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
*
13224702 ACGATGCTCCGACGATGGTAG-CCTGACGAAGAAAAATGC-G-------ACA---CC-AG--C-G
778 ACGATGCTCCGACGATGGT-GCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* * * *
13224751 CATG-ACTACCGCAACCC----T-C---AG-TC-----C--GG--T----T-TA-AT-
842 CATGTGCTGCCGCAACCCTTGATCCGGTCGATCTTAGACTGGGAATGAACTCCATATG
* * * *
13224783 CTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * ** * * * **
13224848 CGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGACCTGGTCCCCCTCTGCATGCTGTGGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTACGTGCTGCCGATCC
* * * * *
13224913 TGCTGCCACAACCCTCAGTCTGGTCTAATCTTAGATTGAGAATGAAACTCCGTATGCCTAAGCCA
130 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG-AACTCCGTATGCCTAAGCCA
* * *
13224978 ACCGACG-AA--AG-GAGTGGGCGGGC--GGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
194 ACCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*** *
13225037 TTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
13225102 TTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
13225167 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTTAAATTTTTTT
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTT
* * *
13225232 TGAAGGATTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
13225297 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
13225362 GACACTTTAATAGCTACT-G--GC--A---G--------CAAA--C-C----------TGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
13225398 TCTCGAGGTTTGATGAAGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCACACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
13225463 ATGT-CTGCACACCCCCCCGACCCCCCCGATCATCGGAACCTCAATGCCGCCAGTCAGGTTCTCC
714 ATGTGC-GCACACCCCCCTG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* ** * * *
13225527 GACGA---T------A--GTGCCCAGGGGAAGAAAAATACGGTGCCAACAACACATGCCTGAGCC
777 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC-G-G-CACCAACACATGCCCGAGCC
* *
13225581 CAGCATGTGCTGTCGCAA--C-----CC--TCGATC-----C---G---G---TCC-GAT-
839 CAGCATGTGCTGCCGCAACCCTTGATCCGGTCGATCTTAGACTGGGAATGAACTCCATATG
* * * **
13225617 CTTAGATTGGGAACGAACTCCGTATGCCTAAGTGAACCCACGAAATTAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
13225682 CGACCAGAGGGGC-AGATGTGCAAGCCGGGGATC-GACTGGGTCCCC-CT-C-TG-T---G----
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCTCTACGTGCTGCCGATCC
** * * * *
13225734 TGCTGTAG--ATCCT--G-CT-G-C-CA--TT-GA-T-----TGAACTCCGTATACCTAAGCCAT
130 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * * *
13225782 TCGATGAAACGA-CGGGTGGCCAGGCGGGCTGGCACTACGCCGACCAAAGAGACGTGATGTGTAA
195 CCGACGAAACGAGCGGGCGGGCGGGCGGG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
13225846 GCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATTCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * * *
13225911 TTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTTACGTGAAGTTTAATGGCAAGAT
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
13225976 GACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTACGATTTGGGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTT
* * * ** *
13226040 TGGAAGGAGTTTTGGCCCCAACCTTGGAAGACATGATCCTTGTATTTTGGTTGGCATGCAAAAAA
453 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAA
*
13226105 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
13226170 CAAACACTTAAATTGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
13226235 GTTCTCGACGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
13226300 TCATGTGCGCACA-CCCCCTGGCCCCCCCGATCGTCGGAACCCCAACGCTGTCGGTCAGGTTCTC
712 TCATGTGCGCACACCCCCCTGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
** * * * * * * * *
13226364 TAATGATGCTCTGGCGTTGGTGCCCCGACGAAGAATAATGCGACACCAGCACATGACCGAGCCCA
776 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* *
13226429 GCATGTGCTGTCGCAACCC-TCAGTCC--T-G-TC-----CT--G-AT---CT---TA-G
841 GCATGTGCTGCCGCAACCCTTGA-TCCGGTCGATCTTAGACTGGGAATGAACTCCATATG
*
13226469 ACTT-G--T---AATGAACTTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 -CTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * *
13226528 ACCGACCCGAGGGGCAGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCATCTGCGTGCTACCGAT
64 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC-TCTACGTGCTGCCGAT
* * * * *
13226593 CCTGCTGCCGTAACCCTTGGTCTGGGCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
128 CCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * **
13226658 AACCGACGAAATGA--------GAGGGC--AGGCATTACGCCGGCCAGAGAGACGGGATGCTTAA
193 AACCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
13226713 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTTTGC-TACCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
13226777 TTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * *
13226842 AACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTCTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTT
* *
13226907 TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCACAAAA
453 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
13226972 AAATTCAGCCAACAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
13227037 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
13227102 TTCTCGAGGTTTAATGAGGGATAGCGGGCCAAGATAAGTGCCAAGTAGCAGCACCCATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
13227167 CATGTGCGCACA-CCCCCTGACCCCTCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCC
713 CATGTGCGCACACCCCCCTGGCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
13227231 GATGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCCCCAACACATGCCCGAGCCCTG
777 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* * * * * * *
13227296 CATGTGCTGTCGTAACTC-TCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
842 CATGTGCTGCCGCAACCCTTGA-TCCGGT-CGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
13227355 TTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACAAGCATACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
13227420 CAGCCAGAGGGGCGGGATGTGCAAGCCGGGGATC-GACAGGGTCCCCTTCTACGTGTTGCTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCC-TCTACGTGCTGCCGATC
* * * *
13227484 CTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
129 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
13227541 TTAGACTAGG
Statistics
Matches: 6960, Mismatches: 865, Indels: 584
0.83 0.10 0.07
Matches are distributed among these distances:
803 23 0.00
804 4 0.00
806 10 0.00
808 1 0.00
809 80 0.01
810 265 0.04
811 3 0.00
813 3 0.00
814 2 0.00
815 18 0.00
816 2 0.00
817 2 0.00
818 2 0.00
819 4 0.00
821 5 0.00
823 1 0.00
825 1 0.00
826 55 0.01
827 80 0.01
828 2 0.00
829 4 0.00
830 3 0.00
831 2 0.00
832 8 0.00
833 28 0.00
834 79 0.01
837 1 0.00
838 46 0.01
839 75 0.01
840 5 0.00
841 1 0.00
846 34 0.00
847 6 0.00
848 56 0.01
849 44 0.01
850 3 0.00
851 6 0.00
852 5 0.00
853 10 0.00
854 10 0.00
855 140 0.02
856 388 0.06
857 2 0.00
861 7 0.00
863 6 0.00
865 6 0.00
866 417 0.06
867 155 0.02
868 2 0.00
869 1 0.00
870 9 0.00
871 181 0.03
872 372 0.05
873 1 0.00
874 1 0.00
875 1 0.00
876 6 0.00
877 1 0.00
878 32 0.00
879 12 0.00
880 185 0.03
881 3 0.00
882 2 0.00
883 1 0.00
884 3 0.00
885 10 0.00
886 105 0.02
887 165 0.02
888 211 0.03
889 9 0.00
890 242 0.03
891 10 0.00
892 2 0.00
893 7 0.00
894 165 0.02
895 39 0.01
896 179 0.03
897 6 0.00
899 2 0.00
900 190 0.03
901 408 0.06
902 492 0.07
903 321 0.05
904 87 0.01
905 6 0.00
906 1 0.00
907 443 0.06
908 106 0.02
909 10 0.00
910 5 0.00
911 1 0.00
913 2 0.00
916 1 0.00
917 3 0.00
919 2 0.00
921 30 0.00
922 580 0.08
923 3 0.00
924 2 0.00
925 5 0.00
928 96 0.01
929 91 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTCTACGTGCTGCCGATCCT
GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTTGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTTGATCCGGTCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:13220344 original size:26 final size:26
Alignment explanation
Indices: 13220315--13220384 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
13220305 TCTTAGATTG
*
13220315 GGAATGAACTTCGTATGCTTATAATA
1 GGAATGAACTCCGTATGCTTATAATA
13220341 GGAATGAACTCCGTATGCTTATAATA
1 GGAATGAACTCCGTATGCTTATAATA
13220367 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
13220385 CTAAGTCAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTATAATA
Found at i:13221257 original size:26 final size:26
Alignment explanation
Indices: 13221228--13221280 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13221218 CCGGTCTGAT
13221228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13221254 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13221280 C
1 C
13221281 CTAAGCTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13223045 original size:26 final size:26
Alignment explanation
Indices: 13223009--13223058 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13222999 CAGTCCACTT
*
13223009 TTAGACTGGGAATGAACTTCGTATTC
1 TTAGACTGGGAATGAACTCCGTATTC
13223035 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
13223059 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATTC
Found at i:13223944 original size:25 final size:26
Alignment explanation
Indices: 13223903--13223954 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
13223893 CCGGTCCGAT
13223903 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13223929 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13223954 C
1 C
13223955 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13227359 original size:26 final size:26
Alignment explanation
Indices: 13227330--13227380 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13227320 TGGTCCGATC
*
13227330 TTAGATTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
13227356 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
13227381 CCAAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:13227638 original size:185 final size:184
Alignment explanation
Indices: 13227321--13227724 Score: 542
Period size: 185 Copynumber: 2.2 Consensus size: 184
13227311 CTCTCAGTCT
* * * * *
13227321 GGTCCGATCTTAGATTGGGAATGAACTCCGTATGTTTAGACTGGGAATGAACTCCGTATGCCAAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTACGCCAAA
* *
13227386 GTCAACCCACGAAACAAGCATACGGGTGCTCAGCCAGCCAGAGGGGCGGGATGTGCAAGCCGGGG
66 GTCAACCCACGAAACAAGCACACGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* *
13227451 ATCGACAGGGTCCCCTTCTACGTGTTG-CTGATCCTACTACCGCAACCCTCGGTCC
131 ATCGACAGGGTCCCC-TCTACGTGCTGTC-GATCCTACTACCGCAACCCTCGATCC
* *
13227506 GGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTACGCCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTACGCCAAA
* * ** * *
13227571 GTCAACCCACGAAACGAGCGCGGGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGG
66 GTCAACCCACGAAACAAGCACACGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * *
13227636 ATCGGCCGGGTCCCCTCTGCGTGCTGTCGATCCTACTGCTGTAACCCTTGATCT
131 ATCGACAGGGTCCCCTCTACGTGCTGTCGATCCTACTACCGCAACCCTCGATCC
13227690 GGT-TCGATCTTAGACTGGGAATGAACTCCGTATGC
1 GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGC
13227725 CTAAGCCAAC
Statistics
Matches: 191, Mismatches: 26, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
183 1 0.01
184 61 0.32
185 129 0.68
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.21
Consensus pattern (184 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTACGCCAAA
GTCAACCCACGAAACAAGCACACGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGG
ATCGACAGGGTCCCCTCTACGTGCTGTCGATCCTACTACCGCAACCCTCGATCC
Found at i:13229316 original size:26 final size:26
Alignment explanation
Indices: 13229280--13229332 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13229270 CCTGTTCGAT
13229280 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13229306 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13229332 C
1 C
13229333 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13229503 original size:26 final size:26
Alignment explanation
Indices: 13229465--13229517 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13229455 CTGGTTTGAT
* *
13229465 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13229491 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13229517 C
1 C
13229518 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13229570 original size:185 final size:184
Alignment explanation
Indices: 13229258--13229675 Score: 606
Period size: 185 Copynumber: 2.3 Consensus size: 184
13229248 ATGTACTATT
* *
13229258 GCAACCCTCGGTCCT-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGA
1 GCAACCCTCGGT-CTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGA
* *
13229322 ACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGG
65 ACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAACCGGCCAGAGGGGCGGG
* *
13229387 ATGTGCAAGCCGAGGATCGACAGGGTCCCCTTCTGCATGCTGCCGGA-CCTACTACC
130 ATGCGCAAGCCGAGGATCGACAGGGTCCCC-TCTGCATGCTACC-GATCCTACTACC
* * *
13229443 GCAACCCTCAGTCTGGTTTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAA
1 GCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAA
* * *
13229508 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAATCGGCCAGAGGGGCGGGA
66 CTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAACCGGCCAGAGGGGCGGGA
* * * * * *
13229573 TGCGCAAGCCGGGGATCGGCCGGGTCCCCTCTGCATGTTACCGATCCTGCTGCC
131 TGCGCAAGCCGAGGATCGACAGGGTCCCCTCTGCATGCTACCGATCCTACTACC
* * *
13229627 GCAACCCTTGGTCTGGTCCGATCTTATACTGGGAATGAACTCCGTATGC
1 GCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
13229676 CTAAGCCAAC
Statistics
Matches: 207, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
183 2 0.01
184 63 0.30
185 142 0.69
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (184 bp):
GCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAA
CTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAACCGGCCAGAGGGGCGGGA
TGCGCAAGCCGAGGATCGACAGGGTCCCCTCTGCATGCTACCGATCCTACTACC
Done.