Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 82 of 190
Found at i:13232094 original size:381 final size:381
Alignment explanation
Indices: 13231379--13232141 Score: 1149
Period size: 381 Copynumber: 2.0 Consensus size: 381
13231369 GTTGGTAGGT
* * * *
13231379 GGGTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATTGCTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTACGTACCAATGCCATTTTTATGGCTTGTAAATTAATACA
* * *
13231444 ATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAGGATGACTCATTTTCTATTTTTCACAATT
66 ATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACAATT
**
13231509 TTGGAAACTTTTTACGGTTGAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCAAACTT
131 TTCAAAACTTTTTACGGTTGAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCAAACTT
* * **
13231574 GGTAGACGTGATCCTTCTATTTTTTTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
196 GGTAGACGTGATCCTTCTATTTTTGTCGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
*
13231639 ACAAGATTTCGTGACCATTTGGAAAAAGTGTCCCATTTCAGACACTTTAACTGCTACTGGTAGCA
261 ACAAGATTTCGTGACCATTTGGAAAAAGTGTCCCATTTCAGACACTTTAACTGCTACTGGCAGCA
* *
13231704 AAACTATAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
326 AAACTATAAAATCTCAAACGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTAATGA
*
13231760 GGGTTTAGGCACATCTTCATATTTCTGCGTACCAATGCCATTTTTATGGCTTGTAAATTAATACA
1 GGGTTTAGGCACATCTTCATATTTCTACGTACCAATGCCATTTTTATGGCTTGTAAATTAATACA
* *
13231825 ATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATT
66 ATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACAATT
* * * * *
13231890 TTCAAAAGTTTTTGCGGTTCG-GGATTTTTTAACATTTTTTTGGAAA-GAGTTTTGGCCCCAAAC
131 TTCAAAACTTTTTACGGTT-GAGGATTTTTTAA-AATTTTTTCGAAAGGAGTTTTGCCCCCAAAC
* * * *
13231953 TTGGTAGACGT-ATCCTTGTATTTTTGTCGGCATGCACAAAAACATTCAGCTAAAAACTCGAATT
194 TTGGTAGACGTGATCCTTCTATTTTTGTCGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
* * *
13232017 GTACAGGATTTTGTGACCATTT-GAAACAAGTGTCCCCATTTTAGACACTTTAA-TGGCTACTGG
259 GTACAAGATTTCGTGACCATTTGGAAA-AAGTGT-CCCATTTCAGACACTTTAACT-GCTACTGG
* *
13232080 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTAATGA
321 CAGCAAAACTATAAAATCTCAAACGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTAATGA
13232141 G
1 G
13232142 AGATAGGGGG
Statistics
Matches: 344, Mismatches: 33, Indels: 10
0.89 0.09 0.03
Matches are distributed among these distances:
379 4 0.01
380 72 0.21
381 256 0.74
382 12 0.03
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (381 bp):
GGGTTTAGGCACATCTTCATATTTCTACGTACCAATGCCATTTTTATGGCTTGTAAATTAATACA
ATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACAATT
TTCAAAACTTTTTACGGTTGAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCAAACTT
GGTAGACGTGATCCTTCTATTTTTGTCGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
ACAAGATTTCGTGACCATTTGGAAAAAGTGTCCCATTTCAGACACTTTAACTGCTACTGGCAGCA
AAACTATAAAATCTCAAACGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTAATGA
Found at i:13232963 original size:26 final size:26
Alignment explanation
Indices: 13232924--13232976 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13232914 TCGATCCCAT
* *
13232924 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
13232950 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
13232976 C
1 C
13232977 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:13236011 original size:26 final size:26
Alignment explanation
Indices: 13235975--13236027 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13235965 GTTTACTTAG
* *
13235975 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
13236001 GCATACGGAGTTTATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
13236027 G
1 G
13236028 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:13236904 original size:26 final size:26
Alignment explanation
Indices: 13236868--13236920 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13236858 GTTGACTTAG
*
13236868 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13236894 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13236920 G
1 G
13236921 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13240319 original size:26 final size:25
Alignment explanation
Indices: 13240283--13240334 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
13240273 TTTGACTTAG
13240283 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAG-CTAA
13240309 GCATACGGAGTTCATTCCCAGCTAA
1 GCATACGGAGTTCATTCCCAGCTAA
13240334 G
1 G
13240335 ATCAACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGCTAA
Found at i:13241181 original size:26 final size:26
Alignment explanation
Indices: 13241145--13241197 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13241135 CTGAGCGCCC
13241145 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13241171 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13241197 G
1 G
13241198 ATCAGACTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13242072 original size:26 final size:26
Alignment explanation
Indices: 13242042--13242091 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13242032 GTTGACTTAG
13242042 GCATATGAAATTCATTCCCAGTCTAA
1 GCATATGAAATTCATTCCCAGTCTAA
* *
13242068 GCATATGGAGTTCATTCCCAGTCT
1 GCATATGAAATTCATTCCCAGTCT
13242092 CAGATCGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
GCATATGAAATTCATTCCCAGTCTAA
Found at i:13242892 original size:896 final size:893
Alignment explanation
Indices: 13241145--13245393 Score: 5712
Period size: 896 Copynumber: 4.7 Consensus size: 893
13241135 CTGAGCGCCC
* ***
13241145 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTACAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * ** *
13241210 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCGTATTTTTCTTCGTCGAGG
66 CGAGGGTTGCGACAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * * * * * *
13241275 CACTATCACCGGATCATCGTCGGAGAACCTGTCCGACGGCATTAAGGTTCCGACGATCAGGGGGC
130 CACCATCA--GGAGCATCGCCGGAGAACCTGACCGACGACATT-GGGTTCCGACGATCGGGGGGC
* * * * * **
13241340 CGGAGGGGTGTGCACACATGATGTGTGATGGTTGCTGGTGCTTTGTACTTATATTGGCCCCCTAT
192 CGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
13241405 CCCTCATCAATCCTTGAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
256 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
13241470 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
321 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * ** * * *
13241535 TAGATTTTTTAGCTGAATTTTTTTGTTTATGCCAAAAAAAATACAGGGATGACGTCTACCAAGTT
386 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * ** *
13241600 TGGTGCCAAAACTCCATCCGAAAAAATTTTAAAAAAT-CTCGAACCGCAGAAAGTTTTGAAAATT
451 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATC
*
13241664 ATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAATGCTTAA-GGACCATTGTA
515 ATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
13241728 TGAATTT-CAAGCCATAAAAATGGCATTGGCATGCAGAAATAT-GATGATGTGCCTAAACCCTCC
580 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGGA-GATGTGCCTAAACCCACC
* * *
13241791 TACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGGCGACGTAGTGCCTGCCCGCCC
644 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * * * * *
13241856 TCCCGATCGTTTCATCGGTTGGCTTGGGCATACGGAGATCATTCCCAGTCTAAGATCAGACCAGA
709 GCCCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * *
13241921 TCGAGGGTTGGGGCAGTAGGATCGACAGCACGTAGAGGGGGAACCAGA-CGATCCCCGGCTTGCG
774 TCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGG-ACC-GATCGATCCCCGGCTTGCG
*
13241985 CATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
837 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
13242042 GCATATGAAATTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTCAGATCGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * *
13242107 CGAGGGTTACGACAGCACATGCTAGGCTTGGGCATGCGCTGGTGTCGCATTTTTCTTCACCGGGG
66 CGAGGGTTGCGACAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
** *
13242172 CACCATCATTGGAGCATTACCGGAGAACCTGACCGACGACATTGGGATTTCGACGATCGGGGGGC
130 CACCATCA--GGAGCATCGCCGGAGAACCTGACCGACGACATTGGG-TTCCGACGATCGGGGGGC
13242237 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
192 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
13242302 CCTCTTCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCC
257 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
13242367 AGCAGCCATTAAAGTATCAGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
322 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
13242431 CGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
387 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
13242496 GGGGCCAAAACTACTTTCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCAT
452 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
* * *
13242561 GAAAAATAGAAAATGATTCATCTTGCCATGATAA-TTCACATGAAGGCTTAAGGGACCATTGTAT
517 GAAAAATAGAAAATGAGTCGTCTTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
13242625 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGGAGATGTGCCTAAACCCACCTA
581 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGGAGATGTGCCTAAACCCACCTA
*
13242690 CCACCCTATCGATCCATGGCTTGCGCAT-CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
646 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * *
13242754 CCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATC
711 CCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC
* * * *
13242819 AAGGGTTGCGATAGCAGGATCGACAGCACGTAGAGGGGGATCCGACCGATCCCCGACTTGCGCAT
776 GAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGA-CCGATCGATCCCCGGCTTGCGCAT
* ** * *
13242884 CTCGCCCCTCAAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
840 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
** * *
13242938 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAGTCCCAGTCTAAGATCGGACCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * *
13243003 GGAGGGTTGCGACAGCACATGCTGGACTCAGGCTTGT-ATAGGTGCCGCATTTTTCTTCACCGGG
66 CGAGGGTTGCGACAGCACATGCTGG-CTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCACCGGG
* * *
13243067 GCACCATC----G--T---CGGAGAACCTGTCTGGCGACATTGGGTTCCGACGATCGGGGGGGCC
129 GCACCATCAGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGTTCCGACGATC-GGGGGGCC
* * ** ** *
13243123 GAAGGGGTGTGCGCACATGATGTGCGATGGTTGCTGGCGCTTGGTGCTTATATTGGCCCCTTATC
193 G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
13243188 CCTAATCAATCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
257 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * *
13243253 AGTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCAAAAAATCCTGTACACTT
322 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
13243318 CGAGTTTTTAACTGAATGTTTTTCTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTT
387 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
13243383 GGGGCCACAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCAT
452 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
*
13243448 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
517 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
13243513 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGGAGATGTGCCTAAACCCACCTAC
582 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGGAGATGTGCCTAAACCCACCTAC
* * *
13243578 CACCCTATAGATCCATGGCTTGCGCATCCGGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
647 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* * *
13243643 CGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCG
712 CGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCG
* * * * * * *
13243708 AGAGTTACGGTAGTAGGATCGCCAGCACGTAGAGGGGGACCCAGTCGATCCCTGGCTTGTGCATC
777 AGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCGA-TCGATCCCCGGCTTGCGCATC
* *
13243773 CCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAG
841 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
13243826 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATCCCCAGTATAAGATTGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * ** *
13243891 CGAAGGTTGCGACAGCACATACTGGCCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGG
66 CGAGGGTTGCGACAGCACATGCTGG-CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * * * *
13243956 CACCATCGACGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCTGGCGATCGGGAGGG
130 CACCATC-A-GGAGCATCGCCGGAGAACCTGACCGACGACATT-GGGTTCCGACGATCGGG-GGG
* * * *
13244021 CCGAGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAATTGGCTCTTATATTGGTCCCCTA
191 CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
13244086 TCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG
255 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
13244150 CCAATAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
320 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
13244215 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGCGTCTACCAGGT
385 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * * **
13244280 TTGGGACAAAAACTCATTTCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATC
450 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
* *
13244345 GTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
515 ATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* ***
13244410 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAAAAAGATGTGCCTAAACCCACCT
580 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGGAGATGTGCCTAAACCCACCT
*
13244475 ACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCG
645 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCG--C-
* * *
13244539 TCCGCCCACCCGCCCGCTCGCTCGCTCGTTTCATCAGTTGGCTTAGGCATATGGAGTTCATTCTC
703 -CCG----CCCG--C-C-CGCTCG-T--TTT-ATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * *
13244604 AGTCTAAGATCGAACC-GAACTGAGGGTTGCGGTAGCAGAATCGACAGCACGCAGAGGGGGACCC
755 AGTCTAAGATCGGACCAGATC-GAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGA-CC
** * * * * * *
13244668 GATCGATCCCCGGCTTG-GCATCTTG-TCCTTTGGCCGGCCGAGCGCCTGCATGCTCGTTTCGTG
818 GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
13244731 GGTTGACTTAG
883 GGTTGACTTAG
* *
13244742 GCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * *
13244807 CGAGGGTTGCGGCAGCACATGCTAGGCTAGGGCATGTGCTTGTGCCGCATTTTTCTT---C---G
66 CGAGGGTTGCGACAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
*
13244866 -----TC-GGAGCATCGCCGGAGAACCTGACCAAC-AGCATTGGGGTTCCGACGATCGGGGGGCC
130 CACCATCAGGAGCATCGCCGGAGAACCTGACCGACGA-CATT-GGGTTCCGACGATCGGGGGG-C
* * * *
13244924 CGGGCGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCTTTATATTGG--CCCTATC
192 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
13244987 CCTCATCAAACCTCGAGACCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCC
257 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
13245052 AATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
322 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
13245117 TGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
387 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
13245182 GGTGCCAAAACTCCTTCCGAAAAAATTGTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGT
452 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
* * * * *
13245247 GAAAAATAGAAAACGAGTCATCTTTCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATG
517 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
13245312 AATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGATGTGCCGAAACCCACCTAC
582 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGGAGATGTGCCTAAACCCACCTAC
*
13245377 CACCCTATCGATACACG
647 CACCCTATCGATCCACG
13245394 CATTGTGCCT
Statistics
Matches: 2976, Mismatches: 319, Indels: 110
0.87 0.09 0.03
Matches are distributed among these distances:
884 10 0.00
885 32 0.01
886 140 0.05
887 309 0.10
888 314 0.11
889 1 0.00
890 1 0.00
894 1 0.00
895 200 0.07
896 469 0.16
897 242 0.08
898 43 0.01
899 389 0.13
900 432 0.15
901 64 0.02
902 53 0.02
904 1 0.00
905 2 0.00
906 3 0.00
910 5 0.00
912 1 0.00
913 2 0.00
914 6 0.00
915 1 0.00
916 148 0.05
917 14 0.00
918 90 0.03
919 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
CGAGGGTTGCGACAGCACATGCTGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
ACCATCAGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGTTCCGACGATCGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAA
AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGGAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT
CGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGG
TTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCGATCGATCCCCGGCTTGCGCATCCCGCC
CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:13242974 original size:26 final size:26
Alignment explanation
Indices: 13242938--13242990 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13242928 GTTGACTTAG
* *
13242938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
13242964 GCATACAGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
13242990 G
1 G
13242991 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:13243856 original size:26 final size:26
Alignment explanation
Indices: 13243826--13243878 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13243816 GTTGACTTAG
* *
13243826 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
13243852 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
13243878 G
1 G
13243879 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:13244771 original size:26 final size:26
Alignment explanation
Indices: 13244742--13244794 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13244732 GTTGACTTAG
*
13244742 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13244768 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13244794 G
1 G
13244795 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13247181 original size:26 final size:26
Alignment explanation
Indices: 13247145--13247197 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13247135 GTTGACCTAG
13247145 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
13247171 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13247197 G
1 G
13247198 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13247883 original size:903 final size:896
Alignment explanation
Indices: 13246291--13248841 Score: 3638
Period size: 903 Copynumber: 2.8 Consensus size: 896
13246281 AGGCATATGA
* * *
13246291 AGTTCATTCCCAGTCTAAGATCGGACC-AGGCCAAGGGTTACGGCAGCACTTGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
* *
13246355 ATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCAT--C--G---C-CGGAGAACCTG-TCCG
65 ATGTGTTGGTGCCGCATTTTTCTTCGCCCGGGCACCATCCCGGGCATCGCGGAGAACCTGAT-CG
* *
13246411 GCGGCATTGGGGTTCAGGTGATC--GGGG--GGGGGGTGTGCGCACATGATTTGC-ATTGGGTGC
129 GCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGC
* * * *
13246471 TAGTACTTAGCCCTTATATTGGCTCCCTATCCCGCATCAAACCTCGAGAACTCACACCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
13246536 AGAGCATTTGAGATTTTACAGGTTTGCAGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCA-CCTATAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
13246601 TTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTGGCTAAATTTTTTTGTGCATGCAAA
322 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCATGCCAA
* * * * *
13246666 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAAACTCCCTCTGAAAAAATTTTAAAA
387 CAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTTTGAAAAAATTTTAAAA
* *
13246731 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
451 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* ** *
13246796 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCTCATTGGCACAC
516 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAC
*
13246861 AGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
581 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
13246926 TCTCTGGCCGACGTAGTGCCCGGCCGCCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATA
646 TCTCTGGCCGACGTAGTG-CC-GCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * ** *
13246991 TAGAGTTCTTTCCCAGTCTAAGATCAGACCAAACTGACGGTTGTGGCAGCAGGATTGGTAGCGCG
709 TAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACG
* * * * *
13247056 TAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGTTGAGCACCCGC-
774 CAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* *
13247120 TCGTTCTTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGG
839 T-GCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGG
* *
13247179 AGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* ***
13247244 TGTGTTGGTGCCGTATTTTTCTTCGTTTGGGCACCATCACCGGGGCATCGTCGGAGAACCTGATC
66 TGTGTTGGTGCCGCATTTTTCTTCGCCCGGGCACCATC-CC-GGGCATCG-CGGAGAACCTGATC
* * *
13247309 GGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGAGGGCGGTGTGCACACATGATGTACGATGAGT
128 GGCGGCATTGGGGTTCCGGTGATCGGGGGGCCG-GGG-GGTGTGCGCACATGATGTGCGATGGGT
*
13247374 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCA-CCCCTT
191 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
13247438 AAAGAGCATTTGAGATTTTACAAGTTTGCTACCTATACCCATTAAAGTGTCTGAAATGGGGACAC
256 AAAGAGCATTTGAGATTTTACAGGTTTGC-ACCTATAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
13247503 TTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTTAATTGTTTTGTGCATGCC
320 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCATGCC
13247568 AACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAA
385 AACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAA
*
13247633 AAATCCCGAACCGCAAAAAGTTAT-GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
450 AAATCCCGAACCGCAAAAAGTT-TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
13247697 AACTTCACGTGAAGGCTTAAGGGACCAGTGTATGAATTTACAAGCCCTAAAAATGGCATTGGCAT
514 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
**
13247762 ACAGAAATATGAAGATGTGCCTAAACCCACCTATGACCCTATCGATCCACGGCTTGCGCATCCCG
579 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
13247827 TCTCTCTGGCCAACGTAGTGCTCGCCAGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
644 TCTCTCTGGCCGACGTAGTGC-CGCC-GCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * *
13247892 TATGGAGTTCATTCCCAGTTTAAGATCAGATCGGACCGAGGGTTGCGGTAGTAGGATCGACAGCA
707 TATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCA
* * * * * *
13247957 TGCAAAGTGGGACCCGGCCGATCCCTGGCTTGTGCATCCCGCCCCTTTGGTCGGCTGAGCACCCG
772 CGCAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
* * *
13248022 CATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGG
837 CATGCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGG
* *
13248082 AGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * * *
13248146 TGTGTTGGAGCCGCATTTTTCTTCGCCCGGGCACTATCGCCGGAGCATCGCCTGAGAACCTGACC
66 TGTGTTGGTGCCGCATTTTTCTTCGCCCGGGCACCATC-CCGG-GCATCG-CGGAGAACCTGATC
*
13248211 GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
128 GGCGGCATTGGGGTTCCGGTGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
13248276 TTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTA
192 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
** *
13248341 AAGAGCGCTTGAGATTTTACAGGTTTGC-CGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
257 AAGAGCATTTGAGATTTTACAGGTTTGCAC-CTA-TAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
13248405 TTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGC-GAATTGTTTTTTGCATGCC
320 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCATGCC
* * * * *
13248469 AACAAAAATACAAGCATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAGAAAATTTTGAA
385 AACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAA
** * * *
13248534 AAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTTGTCTTGCCATGAA
450 AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
13248599 ACTTCACGTGAAGGCTTAAGGGACGATTGTATCAATGTACAAGCCATAAAAATGGCATTGGCATG
515 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
* * * *
13248664 CAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGTGCATCCCGT
580 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
13248729 CTCTCTGGCCGGCGTAGTG-C-CCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATA-
645 CTCTCTGGCCGACGTAGTGCCGCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAT
* *
13248791 CGAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGTGGCAGCA
710 AG-AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCA
13248842 CATGATGGGC
Statistics
Matches: 1484, Mismatches: 147, Indels: 55
0.88 0.09 0.03
Matches are distributed among these distances:
888 90 0.06
889 1 0.00
891 1 0.00
894 1 0.00
896 1 0.00
897 80 0.05
898 2 0.00
899 36 0.02
900 3 0.00
901 356 0.24
902 221 0.15
903 450 0.30
904 166 0.11
905 75 0.05
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
TGTGTTGGTGCCGCATTTTTCTTCGCCCGGGCACCATCCCGGGCATCGCGGAGAACCTGATCGGC
GGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCACCTATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAA
AATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCC
CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGTAGTGCCGCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTT
CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAAGGG
GGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCAT
TTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGG
Found at i:13248087 original size:26 final size:26
Alignment explanation
Indices: 13248051--13248100 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13248041 GACTTAGGCA
13248051 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
13248077 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13248101 ATCGGACGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:13249693 original size:26 final size:26
Alignment explanation
Indices: 13249654--13249703 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
13249644 GACTTTGGCT
**
13249654 TACGAAGTTAATTCCTTGTCTAAGCA
1 TACGAAGTTAATTCCCAGTCTAAGCA
* *
13249680 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTAATTCCCAGTCTAAG
13249704 ATCAGACCAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTAATTCCCAGTCTAAGCA
Found at i:13250587 original size:26 final size:25
Alignment explanation
Indices: 13250551--13250629 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
13250541 GTTAACTTAG
13250551 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAA-TCTAA
*
13250577 GCATACAGAGTTCATTCCAATTCTAA
1 GCATACGGAGTTCATTCCAA-TCTAA
13250603 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATT-CCAATCTAA
13250629 G
1 G
13250630 ATTGGACCGG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 45 0.92
27 4 0.08
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAATCTAA
Found at i:13252289 original size:159 final size:159
Alignment explanation
Indices: 13252000--13252367 Score: 443
Period size: 159 Copynumber: 2.3 Consensus size: 159
13251990 TGCCCGACCG
* * * * * * *
13252000 CCCGCCCGCTCATTTCTTCGGTTGGCTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGGCTAAGATCAGACC
* * * * * *
13252065 GGACTGAGGGTTGCAGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
66 AGACCGAGGGTTGCAGTAGCAAGATCGGCAACACGCAGAGGGGCACCCGACCGATCCCCGGCTTG
*
13252130 CGTATCCCACCCCTCCGGCCGGCTGAGCA
131 CGCATCCCACCCCTCCGGCCGGCTGAGCA
* *
13252159 CCCGCACGCTCATTTCGTGGGTTGACTGAGGCATACGGAGTTCAATCCCAGGCTAAGATCAGACC
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGGCTAAGATCAGACC
* * * * *
13252224 AGACCGAGGGTTG-TG-ACCGCAAGATCGGCAACATGTAGAGGGGCACCCGATCGATCCCTGGCT
66 AGACCGAGGGTTGCAGTA--GCAAGATCGGCAACACGCAGAGGGGCACCCGACCGATCCCCGGCT
* * **
13252287 TGCGCATCCCGCCCCTCTGGCCGGCTGAGTG
129 TGCGCATCCCACCCCTCCGGCCGGCTGAGCA
* * * *
13252318 CCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCA
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
13252368 ATCTAAGCAT
Statistics
Matches: 176, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
157 1 0.01
158 1 0.01
159 174 0.99
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (159 bp):
CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGGCTAAGATCAGACC
AGACCGAGGGTTGCAGTAGCAAGATCGGCAACACGCAGAGGGGCACCCGACCGATCCCCGGCTTG
CGCATCCCACCCCTCCGGCCGGCTGAGCA
Found at i:13252377 original size:26 final size:26
Alignment explanation
Indices: 13252348--13252400 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13252338 GTTGACTTAG
* *
13252348 GCATACGTAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
* *
13252374 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
13252400 G
1 G
13252401 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAATCTAA
Found at i:13253287 original size:26 final size:26
Alignment explanation
Indices: 13253249--13253301 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13253239 GTTGACTTAG
*
13253249 GCATACAGGGTTCATTCCCAGTCTAA
1 GCATACAGGGTTCATTCACAGTCTAA
13253275 GCATAC-GGAGTTCATTCACAGTCTAA
1 GCATACAGG-GTTCATTCACAGTCTAA
13253301 G
1 G
13253302 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGGGTTCATTCACAGTCTAA
Found at i:13254097 original size:901 final size:901
Alignment explanation
Indices: 13252166--13255432 Score: 4084
Period size: 901 Copynumber: 3.6 Consensus size: 901
13252156 GCACCCGCAC
* * * * * * * *
13252166 GCTCATTTCGTGGGTTGACTGAGGCATACGGAGTTCAATCCCAGGCTAAGATCAGACCAGACCGA
1 GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGA
*** * * ** *
13252231 GGGTTGTGACCGCAAGATCGGCAACATGTAGAGGGGCACCCGATCGATCCCTGGCTTGCGCATCC
66 GGGTTGTGGTAGCAAGATCGACAGCACATAGAGGGGCACCCGACCGATCCC-GGCTTGCGCATCC
* * * *
13252296 CGCCCCTCTGGCCGGCTGAGTGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTC
130 CGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTC
* * * * * **
13252361 ATTCCCAATCTAAGCATATGGAGTTCAATCCCAGTCTAAGATCAGACCGGATCGAGGATTGTGGT
195 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGT
* * * * *
13252426 AGCAGATGCTGGGCTCGGGCATCTGTTGGTGGCACATTTTTCTTCATCGGGGCACCATCACC-GA
260 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGA
* * * *
13252490 GGCATCATCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGAGGTGGCC-GGGGGTGTG
325 -GCATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTG
*
13252554 CGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAAC
388 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
13252618 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
453 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
13252683 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAG
518 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * *
13252748 CTGAATTTTTTTGTTCATGCCAACAAAAATACAAGCATCACATCTGCCAAGTTTGGTGCCAAAAC
583 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
*
13252813 TCC-TTCCAAAATAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
648 TCCTTTCGAAAA-AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
13252877 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
712 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *** * * *
13252942 CCATAAAAATGGCATTGGAATGTAGAAACATGAAGTTGTGCCTAAACTCACCTACCACCCTATCG
777 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * * **
13253007 ATCCATGGCTTGGGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCTGCCCGCCC
842 ATCCATGGCTTGCGCATTCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTACCTGCTT
* * * * *
13253067 ACTCATTTTATCAGTTGTCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGA
1 GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGA
* ** * * ** * * *
13253132 GGGTTGCT-GTAGCAGGATCTCCAGCACGTAGATGGGCACCCGGTCGAACCCCGACTTGTGCATC
66 GGGTTG-TGGTAGCAAGATCGACAGCACATAGAGGGGCACCCGACCG-ATCCCGGCTTGCGCATC
* * * * * ** * *
13253196 CCGCGCCTCTGGCCGACTGAGCACGTGCACGGTTGTTTCGCGGGTTGACTTAGGCATAC-AGGGT
129 CCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGT
* * *
13253260 TCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGACCAAGGGTTGCA
193 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCA
* * *
13253325 GTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTC-TCGTCGGGGCACCATCGCCG
258 GTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCG
** * *
13253389 GAGCATCGTCGGAGAACCTGATC-GACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGT
323 GAGCATCACCGGAGAACCTGACCAG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGT
* * *
13253453 GCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCGCTTATATTGGCCCCCTATCCCTCATCAAA
387 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
13253518 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
452 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
13253583 AAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTA
517 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
13253648 GCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAA
582 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * **
13253713 CGCCTTTCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGA
647 CTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
*
13253778 AAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCCATTGTATGAATTTACAA
712 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA-CCATTGTATGAATTTACAA
*
13253843 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATC
776 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
13253908 GATCCACGGCTTGCGCATTCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACCTGCTT
841 GATCCATGGCTTGCGCATTCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTACCTGCTT
* *
13253969 GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAATTGA
1 GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGA
* * * * * *
13254034 -GCTATGTGGTAGCAAGATCGATAGTACATAGAGGGGGACCTGACCGATCCTCGGCTT-TGCATC
66 GGGT-TGTGGTAGCAAGATCGACAGCACATAGAGGGGCACCCGACCGATCC-CGGCTTGCGCATC
* * * * ** *
13254097 CTGCCCCTCTAGCCGGCTGAGCGCCCGCATGCTCATTTTATGGGTTGACTTAGGCAAACGAAGTT
129 CCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTT
* * *
13254162 CATTCCTAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-T-CAT
194 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCA-
* * * * *** * *
13254225 GGCAGCACATGCTGGTCACGGGCACGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGCA
258 -GTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACC
* * * *
13254290 GGAGCATCACCTGAGAACCTGACCAGTGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGTG
322 GGAGCATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTG
* *
13254355 TGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAA
386 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
** *
13254420 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAT
451 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
13254485 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTT
516 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
13254550 AGCTGAATTTTTTTGTGCATGCCAACCAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAA
581 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
13254615 ACTCCTTTTGAAAAAATTTTAAAAAAACCCGAACGGCAAAAAGTTTTGAAAATCGTGAAAAATAG
646 ACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG
* * *
13254680 AAAACGAGTCGTCTTGCCGTGAAACTTCAGGTGAAGGCTTAAAGGACCATTGTATGAATTTACAA
711 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
13254745 GCCATAAAAATGGCATTGACACAGAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATC
776 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
*
13254810 GATCCATGGCTTGCGCA-TCCTGTCTCTCT-GCCGGTGTAGTGCCCGCCCGCCTACCTGCCCGCC
841 GATCCATGGCTTGCGCATTCC-GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTACCT----G-C
13254873 TACCT
900 T---T
** ** * ***
13254878 GCCCGCTTGTTTCGCCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGA
1 ----GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGA
* * * * * * ** * * * *
13254943 CCGAGGGTTGCGGTAG-TAGAATTGGCAGCACACAGAAAAGG-ACCTGGCCGATCCCTGCTTACG
62 TCGAGGGTTGTGGTAGCAAG-ATCGACAGCACATAG-AGGGGCACCCGACCGATCCCGGCTTGCG
* * * * * * * **
13255006 CATCCCGCCCTTCTGGCTGGCTAAGTGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATTGGA
125 CATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA
* * *
13255071 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTT
190 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * * * *
13255136 ACGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACTATCA
255 GCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCA
* * * *
13255201 ACAGAGCATCACCGGAGAACCTGACCAGCGGCATTGGTGTTCC-AGGGATCGGGGGGCCGGGGGG
320 CCGGAGCATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGA-CGATCGGGGGG-C------
*
13255265 CGCGCACACATGATGTGCGATGGGTGCGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
377 CG-G-------G--G-G-G-T--GT--GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
13255330 CATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
425 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
13255395 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
490 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
13255433 GGGTTGCGGT
Statistics
Matches: 2043, Mismatches: 261, Indels: 89
0.85 0.11 0.04
Matches are distributed among these distances:
899 9 0.00
900 110 0.05
901 721 0.35
902 390 0.19
903 360 0.18
905 1 0.00
906 2 0.00
909 1 0.00
912 14 0.01
913 285 0.14
914 6 0.00
915 1 0.00
919 2 0.00
920 1 0.00
927 1 0.00
929 1 0.00
930 1 0.00
931 1 0.00
932 1 0.00
934 2 0.00
936 133 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (901 bp):
GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGA
GGGTTGTGGTAGCAAGATCGACAGCACATAGAGGGGCACCCGACCGATCCCGGCTTGCGCATCCC
GCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAG
CATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ATGGCTTGCGCATTCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTACCTGCTT
Found at i:13254871 original size:12 final size:12
Alignment explanation
Indices: 13254854--13254883 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
13254844 TGTAGTGCCC
13254854 GCCCGCCTACCT
1 GCCCGCCTACCT
13254866 GCCCGCCTACCT
1 GCCCGCCTACCT
13254878 GCCCGC
1 GCCCGC
13254884 TTGTTTCGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.60, G:0.20, T:0.13
Consensus pattern (12 bp):
GCCCGCCTACCT
Found at i:13255298 original size:24 final size:24
Alignment explanation
Indices: 13255266--13255315 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
13255256 GCCGGGGGGC
*
13255266 GCGCACACATGATGTGCGATGGGT
1 GCGCACACATGATGTGCAATGGGT
*
13255290 GCGCGCACATGATGTGCAATGGGT
1 GCGCACACATGATGTGCAATGGGT
13255314 GC
1 GC
13255316 TGGTACTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.20, C:0.22, G:0.38, T:0.20
Consensus pattern (24 bp):
GCGCACACATGATGTGCAATGGGT
Found at i:13256989 original size:26 final size:26
Alignment explanation
Indices: 13256953--13257003 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13256943 GTTGACTTAG
*
13256953 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13256979 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
13257004 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13258146 original size:26 final size:26
Alignment explanation
Indices: 13258117--13258169 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13258107 CCAGTCCGAT
*
13258117 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13258143 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13258169 C
1 C
13258170 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13259067 original size:26 final size:26
Alignment explanation
Indices: 13259031--13259083 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13259021 TCAGTCCGAT
*
13259031 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGAATGGGAATGAACTCT-GTATG
13259057 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
13259083 C
1 C
13259084 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGTATG
Found at i:13259211 original size:914 final size:902
Alignment explanation
Indices: 13257388--13266819 Score: 10316
Period size: 912 Copynumber: 10.4 Consensus size: 902
13257378 CTGATGGTCC
* * * * *
13257388 GGTCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAG-CGGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGAG
* * * * *
13257452 CCAGGCGGGCGGGCACTACGTCAGCCGGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGG
66 -CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
** * * *
13257517 TAGGTGGGTTTAGGCACATCTTCATATTTCTATATGTACCAAAGCCATTTTTGTGGCTTGTAAAT
130 TAGGTGGGTTTAGGCACATCTTCATATTTC--TGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
13257582 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
193 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * *
13257647 CATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAATGAGTTTTGGCCC
258 CACGATTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCC
* * *
13257712 CAAACTTGGTAGAAGTGATCCTTGTATTTTTCTTGGCATGCA-AAAAAACATTTAGCTAAAAACT
323 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACT
* * *
13257776 CAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
387 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
13257841 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGA
452 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* * *
13257906 GAGATGGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
517 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * ***
13257971 CCGACCCTCCCGATCGGCGGAACCCCAATGCTGTCGGTCAGGTTCTCCAACGATGCTCCGACGAT
582 CCGACCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGAT
* *
13258036 GGTGCCCCGATGAAGAAAAATACGGCCCCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
646 GGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * *
13258101 CTCGATCCAGTCCGATCTTAGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGT
711 CTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * * *
13258166 ATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTTAGCCGGCCAAAGCGGTGGGATGAGCA
776 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * *
13258231 AGCCGGGGATCGATCGAGTCCCCCTCTGCATGCTA-TCAATCC-G-GCTATCACAACCCTC-AGT
841 AGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACT-GATCCTGTGC--T-GCAACCCTCGA-T
13258292 CT
901 CT
* * *
13258294 GGTCTGATCCTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGAGGGCGAG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGAG
* * *
13258359 CGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGGGTG
66 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA--GGGTG
* * * *
13258424 GTAGGTGGGTTTAGGCCACATCTTCATATGTCTACGTGCCAGTGCCATTTGTATGGCTTGTAAAT
129 GTAGGTGGGTTTAGG-CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
13258489 TCAATCCAATGGTCCCTTAAGCCTTCACGTGACAGTTTCATAGGCAGGACGACTCGTTTT-TA-T
193 TC-ATACAATGGTCCCTTAAGCCTTCACGTGA-AGTTTCAT-GGCAAGACGACTCGTTTTCTATT
* * * * * * * *
13258552 TTACAACGA-TTTTCAAACTTGTTGGGCGGATCCAAATTTTTTAAAAAAATTTTTAGG-AGGATT
255 TTTC-ACGATTTTTCAAACTT-TT-TGCGGTTCGAGATTTTTT--AAAATTTTTTTGGAAGGA-G
** *
13258615 TTTTCAACCCCCAAACTTGGTA-ACGTGATCCCTTGTATTTTT-TTGGCATGCATAAAAAAATTC
314 TTTT--GGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
13258678 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAC
376 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * *
13258743 TTTAATGGCTATTGGCAACAAACCTGCAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCG
441 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* *
13258808 AGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACATCATGTG
506 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*
13258873 CGCACACCCACCCCGACCCCACCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGA
571 CGCACACCC-CCCCGACCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA
* *
13258938 TGGTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGT
634 TGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
13259003 GCTACCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAATGGG
699 GCTGCCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
13259068 AATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGCCGCTCAGTCGGCCAGACGG
764 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * *
13259133 GCGGGATACGCAAGTCGGGGATCGGTTGAGTCCCTCTCTGCGTGCTACTGATCTTGTTCTAGCAA
829 GCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACTGATCCTGTGCT-GCAA
13259198 CCCTCGATCT
893 CCCTCGATCT
* * * *
13259208 GGTCTGATCTTAGACTGGGAATGGACTCTGTATGCCTAAGCCAACCGACGAAACGAGCA-AGCAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-AGGGCGA
* * * * * *
13259272 ACGGGCGGGTGGGCACTACGTCGGCCAAAGAGACAGGATGCGCAAGCCGTGGTTCGATAGGGTGG
65 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
13259337 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTTCCAATGCCATTTTTATGGCTTGTAAATTC
130 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
13259402 ATACAATGGTCCCTCAAGCCTTCGCGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCA
195 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* *
13259467 TGATTTTTCAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCA
260 CGATTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCA
* ** * * *
13259532 AACTTGGTAGACGTTATCCTTGTATTTTTGTTCACTTGCACAAAAAAGTTCAACTAAAAACTCGA
325 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
13259597 AGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTG
390 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * **
13259662 GCAGCAAACATGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGACTTCTTGAGGTTTGATGAGGG
455 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
* * * *
13259727 ATAGGGGGTCGATATAAGGGCCAAGTACCAGCACCCGTCACACATCATGTGCGCACACCCCCCCG
520 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
** ** *** * * * *
13259792 ACCCCTTGATCATCGGAACCCCAATATAGGCGGTCAGGTTCTTCGGTGATGCTCTGGCGATGGTG
585 ACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG
* * * * *
13259857 CCCCGGTGAAGAAAAATACGGCCCCAGCACATGCCCGAGCTCGGCATGTGCTGTCACAACCCTCG
650 CCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C-
*
13259922 GTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGC
712 -T-C-G---G---TT---C-A-G--T---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGC
* * *
13259987 TTAGACTGGGAATGAACTACGAATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
754 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * * * *
13260052 GACTAGAGGGGCTGGATGCGTAAGCCGAGGATTGGCCGGGTCCCCCTCTTCGTGCT-GTCGATCC
819 GGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACT-GATCC
* * * *
13260116 TGCT-ATCGCAACCCTTGGTCC
883 TG-TGCT-GCAACCCTCGATCT
* * *
13260137 GGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAAGCCAACCGACGAAACGA-ACGGGCGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGA-GGGCGA
** ** ** * * * *
13260201 GCGGAAGTACGGGCACTACATCGGCTAGAGAGTCGGGATGCGCAAGTCGTGGATCGACAGGGTGG
65 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
13260266 TAGGTGTGTTTAGGGACATCTACATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTC
130 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
*
13260331 ATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
195 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
13260396 CGA-TTTTCAAAACTTTTTACGATTAGGGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGGCCCC
260 CGATTTTTC-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCC
* *
13260460 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCA
324 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
13260524 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT
389 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
13260589 CGCAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
454 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * *
13260654 GATAGGGGGCCAATATAAGGGCGAAGTGCCAGCAACCATCGCACATCATGTGCGCACACCCCCCC
519 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * * *
13260719 -AGCCCTCTCTATCGTCGAAACCCCAAT---GCC-GTC-GG---TCAGGT--T-CT-C--CGA--
584 GA-CCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATG
* * * * *
13260767 ------C---GAAGAAAAATGCGGCAGCAGCACATGCCCGAGCCTAGCATGTGCTACCACAACCC
647 GTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* *
13260823 TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTA
712 TCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * *
13260888 TGCCTAAGTCAACCCACGAAACGAGCATGCAGGTGCTCAGTCGGCCAAAGGGGTGGGATGCACAA
777 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * * *
13260953 GTCGGGGACCGGTCGGGTCCCCCTCTGCGTGAT-GTCGATCCTACTGCTGTAACCTTCAATCC
842 GTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACT-GATCCT-GTGCTGCAACCCTCGATCT
** * * * *
13261015 GGTCCAATCTAAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAAC--GAGTG-G-G
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGAG
* * ** *
13261076 CGGGCGGGCGGGCATTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAAGGTGGT
66 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
13261141 AGGTGGCTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
131 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
** * * *
13261206 TACAATGGTCTGTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATGTTCTATTTTTCAC
196 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
** * * * *
13261271 GA-TTTTCAAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTTG-CCC
261 GATTTTTC-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAG-TTTTGGCCCC
** * * *
13261334 AAACTTATTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCA
324 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
13261399 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTGCT
389 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
13261464 GGCAGCAAACCTGTAAAGTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAG
454 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAG
* *
13261528 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCC
518 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * **
13261593 TTAGCCCCCCCGATCGTCGGAACCCCAATGTTGCCGGTCA--------GGT--T-CTCCGACGAT
583 --CGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGAT
* * **
13261647 GGTGCCCCAGTGAAGAAAAATTCATCACCAGCACAATGCCCGAGCCCAGCATGTGCTGCCGCAAC
646 GGTGCCCCGGTGAAGAAAAATACGGCACCAGCAC-ATGCCCGAGCCCAGCATGTGCTGCCGCAAC
*
13261712 CCTCGG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
710 CCTCGGTTC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * *
13261776 GTATGCCTAAGTCAACCCACGAAACGAACATGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCG
774 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
** * * * * *
13261841 CAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGTAACCCTCGGTCT
839 CAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACTGATCCT-GTGCTGCAACCCTCGATCT
** *
13261906 GGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--GA--GC-A-
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGAG
* * * *
13261965 --GACGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGT
66 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
13262028 AGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAAT-CCATTTTTGTGGCTTGTAAATTC
131 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC-AATGCCATTTTTATGGCTTGTAAATTC
* * *
13262092 ATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGATGACACGTTTTCTATTTTTCA
195 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * * *
13262157 CGATTTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTTGAAAGAATTTTTGGCCGCA
260 CGATTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCA
* ** **
13262222 AACTTGGTAGATGTGATCCTTGTATTTTTGTTCACATGCACAAAAAAAGGCAGCTAAAAACTCGA
325 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
13262287 AGTGTACAAGATTTTGTGACAATTTGACAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG
390 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
13262352 GCAGCAAACCTCTAAAATCTCAAATCCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
455 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
*
13262417 ATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCT
520 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-
* * * * * * ** ** *
13262482 GGCCCCTCCGATCACCAGAA-CCCAATACCGCTGGTCAGGTTCTCTGACGATGCTCCGGTGACGG
584 GACCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGG
* * *** * * ** *
13262546 TGCCCCAGCGAAGAAAAATATAAC-CTCAACACATGCCCGAGCCCAGCATGTGCTGTCATAACCT
648 TGCCCCGGTGAAGAAAAATACGGCAC-CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * *
13262610 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATA
712 TCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * * *
13262675 TGCCTATGTCAACCCATGAAACGAGCGTGCAGGTGCTCAGTCGGCCAGAGGGGTGCGATGCGGAA
777 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * *
13262740 GTCGGGGGTCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCTGCAAACCTCAGTTC-
842 GTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACTGATCCTG-TGCTGCAACCCTC-GATCT
** * ** *
13262802 GGTCCAATCTTAGACTGGGAATGACCTCCGTATGCCTAAGCCAACTAACGAAACAAGCGGGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-----CGAG
* * *
13262867 CGGGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
58 AGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
13262932 AGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
123 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* *
13262997 TAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTC
188 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
13263062 TTTTTCATGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
253 TTTTTCACGATTTTTCAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGGAGTTT
** *
13263126 CAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAA
317 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
13263191 AAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAAT
382 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* ** * *
13263256 GGCTACTGGCTGCAAACCTGTTCAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTT
447 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* **
13263321 GATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCTTCCATCGCACATCATGTGCGCACA
512 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
13263386 -CCCCCTG-GCCCCCGATCGCCGGAACACCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGG
577 CCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGA
* * * * *
13263449 GGATGGTGCCCCGATGAAGAAAAATACGGCACCAGAACATGCCCGAGCCAAGCATGTGCTGTCGC
642 CGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
*
13263514 AA-CC-C---TCA----G-TC-----C--GG--T---CT--G-AT-CTTTGACTGGGAATGAACT
707 AACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
13263553 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCTAGAAGGGTGGGATG
772 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
** * * * *
13263618 CATAATTTGGGGATCGG-CTGGG-GCCCCTCTGCGTGCTGCTGATCCTGCTGCTGCAACCCTC-A
837 CGCAAGTCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTACTGATCCTG-TGCTGCAACCCTCGA
13263680 GTCT
900 -TCT
* * * * * *
13263684 GATTTGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAGCCAGCCAATGAAAC--GA--GC--G
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGAG
* * *
13263743 -GGACGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGT
66 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
13263807 AGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT-AATTCA
131 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * * *
13263871 TACAATGTTCCTTTAAACCTTCACTTGAAGTTTCATGTCAAGACGACTCGTTTTCTATTTTCCAC
196 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * ** **
13263936 GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAGTTTTCTCAGAAGGAGTTTTGGCCATAA
261 GATTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
*
13264001 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAA
326 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
** * *
13264066 GTGTACAAGATTTTGTGATAATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATTGCTACTGG
391 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* ** *
13264131 CAACAAACCCATAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCAAGGTTTGATGAGGGA
456 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* * * *
13264196 TAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATCGCACATCATATGCGCACACCCCCCGGC
521 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGA
* * * *
13264261 CCCCCCGATCACCGAAACCTCAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTG-
586 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
* * ** * *
13264325 CCTGTGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTG
651 CCCG-GTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
13264390 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG-ATCGAACTCTGTATG
715 GTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT-GAACTCCGTATG
* * * * * *
13264454 CCTAAGTCAACCCACGAAACGGGTGTACCGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGT
779 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGT
* ** * * * *
13264519 CGGGGATCGGTCGGGTCCCCTTCTGCGTGCTACCAATCTTGCTACTGCAACCCTCGGTCC
844 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACTGATCCTG-TGCTGCAACCCTCGATCT
* ** *
13264579 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTACCGA-TTAA-GA-AGCG-GA-
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGAG
* * *
13264639 CGGGCGGGCGGGCACTACGCCGGCCTGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTTGT
66 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
13264704 AGGTGGGTTTAGGCACATCTCCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
131 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
13264769 TATAATGGTCCCTTAAGCCTTCACATGAATTTTCATGGCAAGACGGCTCGTTTTCTATTTTTCAC
196 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
13264834 GA-TTTTCAAAATTTTTTGTGGTTAG-GAATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCC
261 GATTTTTC-AAACTTTTTGCGGTTCGAG-ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCC
* * *
13264897 AAACTTGGTAGATGTGATCTTTGTATTTTT-TT----TG------GAAA-TCA-C-AAAAA----
324 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
13264944 AA-TGTACAATATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
389 AAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
13265008 TGGCAGCAAACCTGTAAAATCTCAACTGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
453 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
*
13265073 GGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCAC
518 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-C
* * * * * ***
13265138 CC-AGCCCCCGATCGTCGGAACCTCAATACCGGCCTAGTCCAGGTTCTCCGACAATGCTCCTGAC
582 CCGACCCCCCGATCGCCGGAACCCCAATGCC-GCC-GGT-CAGGTTCTCCGGTGATGCTCC-GAC
** ** *
13265202 GATGGTGCCCCCGACGAAGAAAAATGTGGCACCCAGCACATGCCTGAGCCCAGCATGTGCCT-CC
643 GATGGTG-CCCCGGTGAAGAAAAATACGGCA-CCAGCACATGCCCGAGCCCAGCATGTG-CTGCC
* * * * *
13265266 GTAACCCTCAG-TCTAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGA
705 GCAACCCTCGGTTC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * * *
13265330 ACTCCGTCTGTCTAAGTCAACCCATGAAATGAGCGTACAGACGCTCAGCCGGCC-GAGGGGCGGG
769 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * ** ** * * ** *
13265394 ATGCACAAGCCAGGGATCGACCAAGTCCCCCTCTGCATGCTGCCAATCCTGTTGCCGCAACACAC
834 ATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACTGATCCTG-TGCTGCAAC-C-C
13265459 -CGATCT
896 TCGATCT
* * **
13265465 GAT-TCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCCAA-C--CG-AACGA-A--ATG
1 GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACCGACGAAACGAGAGGGCG
* **
13265522 AGCGGGCGGGCAGGGTACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGAAGATCGATA-GGT
64 AGCGGGCGGGC-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
13265586 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTATGGCTCGTAAA
128 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-GTGCCAATGCCATTTTTATGGCTTGT-AA
13265651 ATTCATACAATGGTCCCTTTAAGCCTTCACGTGAAGTTTTCATGGCAAAGACGACTCGTTTTCTA
191 ATTCATACAATGGTCCC-TTAAGCCTTCACGTGAAG-TTTCATGGC-AAGACGACTCGTTTTCTA
* * * * * *
13265716 TTTTTTCA-TAATTTTCGAACTATTTGCGGTTCGGGATTTTTTTAAAACTTTTTTTTGAAGGCA-
253 -TTTTTCACGATTTTTCAAACTTTTTGCGGTTCGAGA-TTTTTTAAAA-TTTTTTTGGAAGG-AG
* * *
13265779 -TTTGGCCCCAAACTTGGTAGACGTGACCCTTGGTATTTTTGTTGGCGTGCATAAAAAAATTCAG
314 TTTTGGCCCCAAACTTGGTAGACGTGATCCTT-GTATTTTTGTTGGCATGCACAAAAAAATTCA-
*
13265843 GCTAAAAACTCGAAGTGTACAAGACTTTGTGACCATTTTGAAAAAAGTGTCCCCATTTCAGACAC
377 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACAC
13265908 TTTCAAT-GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCT
441 TTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCT
* ** *
13265972 CAAGGCTTTAATGAGGGATAGTTTGGCCCATATAAGGGCC-AGTACCAGCACCCATTCTGCAGCA
504 CAAGG-TTTGATGAGGGATAG-GGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TC-GCA-CA
* * * * * ** * *
13266036 CCGACTGATGTGAACACCCCCCTGGGCCCCCGCCGATCG-CGGAACCTTAATGCTGGCTGGTCAT
564 TC-A-TG-TGCGCACACCCCCC--CGACCCC-CCGATCGCCGGAACCCCAATGC-CGCCGGTCA-
* * *
13266100 GGGTTCTCCGGGGATGCTTAAGGAACGATCGCCCACGGTGGATGGCTGCCTCGGCGCAAGAAAAA
621 -GGTTCTCCGGTGATGC-T------C---CG---AC----GATGG-TGCCCCGGTG-AAGAAAAA
* ** * *
13266165 TACAGGCACCAAGCAACATTAACCCGAGCCCCATGCATGCTGCTTGCTACACACCCATCAGTCCA
666 TAC-GGCACC-AGC-ACA-T-GCCCGAG-CCCA-GCATG-TGC-TGCCGCA-ACCC-TCGGTTCA
* * * *
13266230 GTTCAATCTTAGATCTGGGAATGAACTCCGTATGCCTAGACAGGGAATTGAAACTCCGGTTGATG
720 GTCCGATCTTAGA-CTGGGAATGAACTCCGTATGCTTAGACTGGGAA-TG-AACTCC-G-T-ATG
* * * * **
13266295 CGCTATGTCGAACCCA-GAAAATTGAGCGTGCAGAGCCGGCTGCAGCGCAAGCCAGAGGAGAATG
779 C-CTAAGTC-AACCCACG-AAA-CGAGCGTGC-G-GGC-GCT-CAGC-C-GGCCAGAGG-G-GCG
* * * *
13266359 GGAATGCGCAAGCCGCGGATTCGGTCGGGTCCCCCTCTGCTTGCGTGA-TCGATCGCTACTG-TC
832 GG-ATGCGCAAGTCGGGGA-TCGGTCGGGTCCCCCTCTGCGTGC-T-ACT-GATC-CT-GTGCT-
* *
13266422 GAAAACCCATGCGGTCT
889 G-CAACCC-T-CGATCT
** *
13266439 GGTTCTGATCTCTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGAG-GTGCG
1 GG-TCTGATCT-TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCG
* * * * * * *
13266503 CAAC--GAGGGC-GGCACTACGCCGACCAGAGAGAC-CGATGCACAAGTCGTGGATCGATAGGAT
64 -AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
13266564 CGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT-CCATTTTTATGGC-TGTAAAT
128 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
13266627 TCATACAATGGTCCCTTAAGCCTT-ACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTT
193 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * *
13266691 CATGA--TTTCAAAACTTTTTTGCTGTTCGGGATTTTTTAAAA-TTTTTTCGAA-GATTTTTTG-
258 CACGATTTTTC-AAAC-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGC
* * * *
13266751 CCTAAACTTGGTAGGCGTGATCCTTGTATTTTTGTT-GCATGCACAAAAAATTTCAGCTAAAAAG
321 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
13266815 TCGAA
386 TCGAA
13266820 NNNNNNNNNN
Statistics
Matches: 7266, Mismatches: 925, Indels: 613
0.83 0.11 0.07
Matches are distributed among these distances:
866 350 0.05
867 124 0.02
868 105 0.01
869 2 0.00
870 2 0.00
872 1 0.00
873 1 0.00
874 262 0.04
875 209 0.03
876 26 0.00
877 6 0.00
878 193 0.03
879 32 0.00
880 184 0.03
881 8 0.00
882 78 0.01
883 105 0.01
884 21 0.00
885 129 0.02
886 262 0.04
887 489 0.07
888 24 0.00
889 11 0.00
890 54 0.01
891 299 0.04
892 23 0.00
893 9 0.00
894 91 0.01
895 78 0.01
896 241 0.03
897 159 0.02
898 138 0.02
899 5 0.00
900 2 0.00
902 1 0.00
903 105 0.01
904 87 0.01
905 209 0.03
906 118 0.02
907 46 0.01
908 106 0.01
909 133 0.02
910 73 0.01
911 60 0.01
912 581 0.08
913 239 0.03
914 443 0.06
915 26 0.00
916 4 0.00
917 3 0.00
918 4 0.00
919 6 0.00
920 13 0.00
921 6 0.00
922 31 0.00
923 8 0.00
924 2 0.00
925 4 0.00
926 3 0.00
927 3 0.00
928 208 0.03
929 473 0.07
930 1 0.00
931 1 0.00
932 1 0.00
934 2 0.00
938 11 0.00
939 13 0.00
940 7 0.00
941 3 0.00
942 1 0.00
943 5 0.00
944 4 0.00
945 6 0.00
946 3 0.00
947 2 0.00
948 4 0.00
949 15 0.00
950 31 0.00
951 1 0.00
952 6 0.00
953 1 0.00
954 1 0.00
955 2 0.00
956 7 0.00
957 9 0.00
958 8 0.00
960 2 0.00
961 3 0.00
962 4 0.00
963 14 0.00
964 19 0.00
965 16 0.00
966 24 0.00
967 16 0.00
968 17 0.00
969 39 0.01
970 33 0.00
971 13 0.00
972 14 0.00
973 12 0.00
974 25 0.00
975 12 0.00
976 42 0.01
977 26 0.00
978 59 0.01
979 5 0.00
980 5 0.00
981 1 0.00
982 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGAG
CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGA
CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
CCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
TTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCG
GGGATCGGTCGGGTCCCCCTCTGCGTGCTACTGATCCTGTGCTGCAACCCTCGATCT
Found at i:13260012 original size:26 final size:26
Alignment explanation
Indices: 13259934--13260004 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
13259924 CCGGTCTGAT
*
13259934 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13259960 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13259986 CTTAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
13260005 ACGAATGCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13260867 original size:26 final size:26
Alignment explanation
Indices: 13260838--13260890 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13260828 CCAGTCCGAT
13260838 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13260864 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13260890 C
1 C
13260891 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13261758 original size:26 final size:26
Alignment explanation
Indices: 13261729--13261781 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13261719 CTGGTCCGAT
13261729 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13261755 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13261781 C
1 C
13261782 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13262654 original size:26 final size:26
Alignment explanation
Indices: 13262625--13262677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13262615 CCGGTCCGAT
*
13262625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13262651 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13262677 C
1 C
13262678 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13262867 original size:4 final size:4
Alignment explanation
Indices: 13262858--13262887 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
13262848 AACGAAACAA
13262858 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
13262888 ACTACACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.27, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:13264431 original size:26 final size:26
Alignment explanation
Indices: 13264402--13264454 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13264392 CCGGTCCGAT
13264402 CTTAGACTGGGAAT-GAACTCCGTATG
1 CTTAGACTGGG-ATCGAACTCCGTATG
*
13264428 CTTAGACTGGGATCGAACTCTGTATG
1 CTTAGACTGGGATCGAACTCCGTATG
13264454 C
1 C
13264455 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGATCGAACTCCGTATG
Found at i:13264885 original size:25 final size:27
Alignment explanation
Indices: 13264836--13264890 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
13264826 TTTTTCACGA
*
13264836 TTTTCAAAATTTTTTGTGGTTAGGAAT
1 TTTTCAAAATTTTTTGTGGTAAGGAAT
* *
13264863 TTTTTAAAATTTTTTG-GG-AAGGAGT
1 TTTTCAAAATTTTTTGTGGTAAGGAAT
13264888 TTT
1 TTT
13264891 GGCCCCAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 8 0.32
26 2 0.08
27 15 0.60
ACGTcount: A:0.25, C:0.02, G:0.20, T:0.53
Consensus pattern (27 bp):
TTTTCAAAATTTTTTGTGGTAAGGAAT
Found at i:13268498 original size:26 final size:26
Alignment explanation
Indices: 13268462--13268540 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
13268452 GTTGACTTAG
13268462 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCTGTCTAA
13268488 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCTGTCTAA
*
13268514 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCTGTCTAA
13268540 G
1 G
13268541 ATCGGACTAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTGTCTAA
Found at i:13270261 original size:26 final size:26
Alignment explanation
Indices: 13270231--13270283 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13270221 GTTGACTTAG
* *
13270231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
13270257 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
13270283 G
1 G
13270284 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:13271068 original size:894 final size:888
Alignment explanation
Indices: 13269326--13272496 Score: 3918
Period size: 894 Copynumber: 3.6 Consensus size: 888
13269316 TCGTTTTGTG
** * * *
13269326 GGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCAAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * * * * *
13269391 TCAGATCGGACCGAGGGTTGCAGAAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
66 TCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
** * *
13269456 CTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAT
131 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * *
13269521 GGTCGGGGGGCCGGGCGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT
196 GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
13269586 GGCCCCCTATCCCTCATCAAACCTCGATG-ACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
261 GGCCCCCTATCCCTCATCAAACCTC-AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
13269650 AGGTTTGTTGCTAGTAGCCATTAAAATGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
325 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * * * *
13269715 TCTTGTACAATTCTATTTTTTAGCTGAATTTTTTTGAGAATCCTCAAAAAAAGTACAAGGATCAC
390 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC-CAAAAAAAATACAAGGATCAC
* * * **
13269780 GTCTA-CAA-TTTGGGCCCAAAACTCCTTCCAAAAAAATTTT-AAAAATCTTAAACCCCAAAAAG
454 GTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCTGAACCATAAAAAG
** * * * *
13269842 TTTTGAAAATCGTG-AAAATAAAAAACGAGTCATCATGCCTTGAAACTTCACGTGAAGGATGAAG
518 TTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* **
13269906 GGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCA-TGAAAAATATGAAGATGTGCC
583 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCC
*
13269970 TAAACCCATCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
648 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * ** **
13270035 CCACCCGCCCGTCCACTCATTTCGTCGATTCACTTAGGCATACGGAGTTCATTCGTAGTCTAAGA
713 CCA-CC-CAC-T-CGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *** *
13270100 TCTGATCAGACCGAAGATTACGATAGCAGGATC-ATCACCATGTAGAGGGGG-ACCTGGCCGATC
774 T-TGATCGGACCGAGGGTTGCGATAGCAGGATCGA-CAGCACACAGAGGGGGAACC-GACCGATC
*
13270163 CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGTTCGTTTCATA
836 CC-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG-ACG-TCGTTTC-TA
*
13270220 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAATTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* ** * *
13270285 TTGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCC-AATTTTT
66 TCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
** * * *
13270349 CTTCGTTAGGGCACCATCGTCGGAGCATCGTCGGGGAACTTGATCGGCGGCATT-GGGTTCCGAC
131 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * * * * *
13270413 AATCGGGGGGGCCGGGGGGGTGTGCGCACAAGATGGGGTGATGGGTTCTGGTACTTTGCCCTTAT
196 GATC-GGGGGGCC-GGGGGGTGTGCGCACATGAT-GTGCGATGGGTGCTGGTACTTGGCCCTTAT
13270478 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT-AAGAGCATTTGAGATTTT
258 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
13270542 GCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATAGGGACACTTTTTTCAAATGGTCACAA
323 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
13270607 AATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
388 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* *
13270672 CGTTTACCAAGTTTGGGGCCAAAACTCCTTCCAAACAAATTTTAAAAAATCCTGAACCTTAAAAA
453 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA-AAATTTTAAAAAATCCTGAACCATAAAAA
* * * *
13270737 GTTTCAAAAATCGTGAAAAATACAAAATGAGTCGTCTTGCCATGAAACTTCACCTGAAGGCTTAA
517 GTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
13270802 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGC
582 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGC
* * * * *
13270867 CTAAACCCACCAACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTAGCCGGTGTAGTG
647 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* *
13270932 CCCACCCACTCGCTCGTTTTGTCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTA
712 CCCACCCACTCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-
* * * * * *
13270997 GACCGGACTGAGGGTTGCAGCT-CCAGGATTGGCAGCACACAGAGGGGGAACCGACCGATCTCCG
776 GATCGGACCGAGGGTTGC-GATAGCAGGATCGACAGCACACAGAGGGGGAACCGACCGATC-CCG
* * * * *
13271061 ACTTGCGCATCCCACCCCTCTGGCCGGTTGAGCACCCGCATGCTCATTTCGTG
839 ACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG-ACG-TCGTTTC-TA
*
13271114 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAG
* *
13271178 ATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTT
65 ATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTT
* *
13271243 TCTTCGTTGGGGCACCA---T-----CA-C--CGGAGAACCTGACCGGCGGCATTGGGGTTCCGG
130 TCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
* * *
13271297 CCATCGGGGGG-CGGGGGGAGTGCGCACATGATGTGCGATGTGTGCTGGTACTTGGCCCTTATAT
195 CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
13271361 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
260 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
13271426 AGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGTTCACAAAA
325 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* **
13271491 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCACACCAAAAAAAATACAAGGATCACG
390 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* ** * * ** * *
13271556 TCTTCCAAGTTTGGGGATAAAAATCCTTTCGAAAAAATTGAAAAAAATCCCGAACAATAAAAAGT
455 TCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCTGAACCATAAAAAGT
* *
13271621 TTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAACGCTTAAGG
519 TTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
13271686 GACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATGGCACACAGAAATA
584 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG----C----A---CACA-A-AAATA
* * *
13271751 TGAAGATGTGCCTAAACCCACCTATCACGCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGG
636 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
13271816 CCGACGTAGTGCCCGCCCACCCGCCCATCCGCCTCCATTCGTCGGTTGGCTTAGGCATACGAAGT
701 CCGGCGTAGTGCCCACCCACTCG--C-T-CG--T---TTCGTCGATTGGCTTAGGCATACGGAGT
* * * * *
13271881 TCATTCCCAGCCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAAGATCGATAGCACCCAGAGG
757 TCATTCCCAGTCTAAGATT-GATCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACACAGAGG
* * * * *
13271946 GGGACCCGACCGATCCTCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC-AC-ACG-C
821 GGGAACCGACCGATCC-CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGACGTCGTT
13272008 TC-A
885 TCTA
* * * *
13272011 ---T--C-T---CAT-C--AGTTGA----C-G--TAGGCATACGAAGTTCATTCCCAGTGTAGGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * *
13272057 TCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
66 TCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
* * * * * * ** *
13272122 CTTTGTCGGGGCGCCATCGCCAGAGCATCGTCGGAGAACCTGACCGGTGCCATTGGGGTTTAGGC
131 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * * * * * *
13272187 GATCGGGGGGGCCGGGGGGTGTGCGCTCATGATTTGTGATGGGTGTTCGTACTTGTCCTTTATAT
196 GATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
13272252 TGGCCCCCTATCCCTCATCAAACCTTAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
260 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
13272317 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
325 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
13272382 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACA
390 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* *
13272447 TCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAAAAAGTTTAAAAAATCC
455 TCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCC
13272497 CAAACCGCAG
Statistics
Matches: 1980, Mismatches: 238, Indels: 121
0.85 0.10 0.05
Matches are distributed among these distances:
878 99 0.05
879 1 0.00
880 1 0.00
881 70 0.04
882 304 0.15
883 7 0.00
884 26 0.01
885 17 0.01
886 4 0.00
887 4 0.00
888 3 0.00
889 33 0.02
890 9 0.00
891 268 0.14
892 13 0.01
893 90 0.05
894 491 0.25
895 205 0.10
896 32 0.02
897 87 0.04
898 82 0.04
899 4 0.00
900 1 0.00
901 1 0.00
902 1 0.00
903 3 0.00
904 124 0.06
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (888 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
TCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTT
CAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCA
CCCACTCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGATCG
GACCGAGGGTTGCGATAGCAGGATCGACAGCACACAGAGGGGGAACCGACCGATCCCGACTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCACCCGACGTCGTTTCTA
Found at i:13271154 original size:26 final size:26
Alignment explanation
Indices: 13271125--13271177 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13271115 GTTGACTTAG
* *
13271125 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13271151 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13271177 G
1 G
13271178 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13271741 original size:13 final size:13
Alignment explanation
Indices: 13271723--13271749 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13271713 AAAATGGCAT
13271723 TGGCACACAGAAA
1 TGGCACACAGAAA
13271736 TGGCACACAGAAA
1 TGGCACACAGAAA
13271749 T
1 T
13271750 ATGAAGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.11
Consensus pattern (13 bp):
TGGCACACAGAAA
Found at i:13273767 original size:26 final size:26
Alignment explanation
Indices: 13273738--13273790 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13273728 CTGGTCCGAT
13273738 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
* *
13273764 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
13273790 C
1 C
13273791 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:13276483 original size:25 final size:26
Alignment explanation
Indices: 13276432--13276483 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
13276422 CCGGTCCAAT
*
13276432 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCGATATG
13276458 CTTAGACT-GGAATGAACTACGA-ATG
1 CTTAGACTGGGAATGAACT-CGATATG
13276483 C
1 C
13276484 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGATATG
Found at i:13276689 original size:901 final size:895
Alignment explanation
Indices: 13273014--13279190 Score: 7530
Period size: 901 Copynumber: 6.9 Consensus size: 895
13273004 TGGTCCGGCA
* * * *
13273014 TGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGGCGGGCAGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGC--G
* * * *
13273079 CGGGCGGGTACTACGTCAGCCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGT
64 -GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
13273144 GGGTTTAGGCACATCTTCATATATCTATATGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATA
128 GGGTTTAGGCACATCTTCATAT-T-TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
13273209 CAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
191 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* ** * *
13273274 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAACGAGTTTTGGCCCCAAAC
256 TTTTTCAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
* *
13273339 TTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA-AAAAAACATTTAGCTAAAAACTCAAAG
321 TTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAG
* *
13273403 TGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGC
384 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
13273468 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGAAG-GGAGA
449 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG-GA
* *
13273532 TGGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAC
513 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAC
* * * * * *
13273597 CCTCCCGATCGACAGAACCCCAATGCTGTCGGTCAAGTTC-TCTGACGATGCTCCGACGATGGTG
578 CC-CCCGATCGTCGGAACCCCAATGC-G-CCGTCAGGTTCTTC-G-GGATGCTCCGGCGATGGTG
* *
13273661 CCCCAGTGAAGAAAAATACGGCCCCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
638 CCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* *
13273726 GTCTGGTCCGATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGC
703 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGC
* * * * * * * * * *
13273791 CTAAGTCAACCCATGGAATGAGCATGCGGGCACTTACCCGGCCAAAGGGGTGGGATGAGCAAGCC
768 CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC
* * ** * * * ** *
13273856 GGGGATCGATCAAGTCCCCCTCTGCGTGCTATCAATTCGGCTACCACAACCCTCGGTCTGGTC
833 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGGTC
* * * *
13273919 TGATCCTAGACTGAGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGAACGG-
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--A-GGC
* * * * ** * *
13273983 GTGGGCGTGTACTACGCCGGCTAGAGAGACAAGATGCGCAAGCCATGGATCGATAGGGTAGTAGG
63 G-GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
13274048 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAGTCCCATTTGTATGGCTTGTAAATTCATAC
127 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
13274113 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTCTCTATTTTACACGA-
192 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * ** * *** ** * * ** *
13274177 TTTTCGAACTTGTTGCGGATCAAAATTTTTTAAAA-AATTTTGGGAGGATTTTTCACCCCAAACG
257 TTTTCAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
* *
13274241 TGGTAGACATGATCCTTGTATTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGT
322 TGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
13274306 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGTTACTGGCAAC
387 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * * *
13274371 AAACCTGCAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCAAGATTTGATGATGGATAAG
452 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* * * * * *
13274436 GGACCAATATAAGGGCCAAGTACTAGCATCCATCACACATCATGTGTGCACACCCCCCAGCCCCC
517 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCC
* * * *
13274501 CCGATCATCGGAGCCCCAATGCTGCCTGTCA-G---TT-----T-CTCCGGTGATGGTGCCCCGA
581 CCGATCGTCGGAACCCCAATGC-GCC-GTCAGGTTCTTCGGGATGCTCCGGCGATGGTGCCCCGG
* ** * * ** *
13274556 CGAAGAAAAATGGGGCACCAGCACAAGCCTGAGCATAGCATGTGCCTGCCGCAACCCTCGGTCTG
644 TGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG-CTGCCGCAACCCTCGGTCCG
* *
13274621 GTCTGATCTTAGGACTGGGAATGAACTCCGTATGCTTTAGACTGGGAATGAACTTTGTATGCCTA
708 GTCCGATCTTA-GACTGGGAATGAACTCCGTATGC-TTAGACTGGGAATGAACTCTGTATGCCTA
** * *
13274686 AGTCAACCCAAAAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGAG
771 AGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAG
* * * ** * * * * *
13274751 GATTGATCGGGTCACCCTCTATGTGCTATCGATCATACTACCACAACCCTCAGTCTGAT-
836 GATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGGTC
* * * * * *
13274810 TCGATCATAGACTAGGAATGCACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCAG
1 T-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGC-G
* * * **
13274875 ACGGGCGGGCACTATGTCGGCCAGAGAGACGGGCTGCGCAAGTCGTGGATCGATAGGGTCATAGG
64 --GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* ** **
13274940 TGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGATATTTTTATCACTTGTAAATTCATAC
127 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
13275005 AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
192 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* *
13275070 TTTTGAAACTTTTTATGGTTCGGGATTTTTTACAATTTTTTTGGATA-GAG-TTTGGCCCCAAAC
257 TTTTCAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGA-AGGAGTTTTGGCCCCAAAC
*
13275133 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTGGAAGT
321 TTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
13275198 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
385 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
13275263 ACAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
450 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
*
13275328 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCAAT-GCACATCATGTCCGCACACCCACCCCGA
515 GGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCACA-CC-CCCCGA
* * *
13275392 CCCCACCGATCGTCGGAACCCCAATGCCGTCGCTCAGGTTCTTCGGCGATGGTCCGACGATGGTG
577 CCCC-CCGATCGTCGGAACCCCAATG-CGCCG-TCAGGTTCTTCGG-GATGCTCCGGCGATGGTG
* ** *
13275457 CCCTGGTGAAGAAAAATACGGCACCAGCACATGATCGAGCCCAGCATGTGCTACCGCAACCCTCG
638 CCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * *
13275522 GTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTGAGAATGGGAATGAACTCTGTATGC
703 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGC
* * * * * * *
13275587 CTAAGTTAACCCGCGAAATGAGCGTGCGGCCGCTCAGCCGGCCAGACGGGCGGGATACGCAAGTC
768 CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC
* * * * * * * *** *
13275652 GGGGATCGGTTGAGTCCCCCTCTGTGTGCT-ACTGATCTTGCTGTAGCAACCCTCGATCTGGTC
833 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-GATCCTACTACCGCAACCCTCGGTCTGGTC
* * * *
13275715 TGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAATCGAG-GAAGCAAGC-G
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GGCAGGCGG
* * * *
13275778 GGCGGGCACTACGTCGGCCAAAGAGACAGGATGCGCAAGCCATGGTTCGATAGGGTGGTAGGTGG
65 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
13275843 GTTTAGGCACATCTTCATATTTCTACGTTCCAATGCCATTTTTATGGCTTTTAAATTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
13275908 GGTCCCTCAAGCCTTCGCGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
13275973 TCAAACTTTTTGTGATTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
260 TCAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
* ** * * *
13276038 TAGACGTTATCCTTGTATTTTTGTTCACTTGCACAAAAAAGTTCAGCTAAAAACTCGAAGTTTAC
325 TAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
13276103 AATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
13276168 ACATGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * * * **
13276233 GTCGATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCACTTG
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCG
* * * *
13276298 AACGTTGGAACCCCAATACAGCCGATCAGGTTCTTCGGTGATGCTCTGGCGATGGTGCCCCGGTG
584 ATCGTCGGAACCCCAATGC-GCCG-TCAGGTTCTTCGG-GATGCTCCGGCGATGGTGCCCCGGTG
* * * * *
13276363 AAGAAAAATACGGCACCAGCATATGCCCGAGCTCGGCATGTGCTGCTGCAACCCTCGATCCGGTC
646 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* ** *
13276428 CAATCTTAGACTGGGAATGAACTCTATATGCTTAGACT-GGAATGAACTAC-GAATGCCTAAGTC
711 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CTGTATGCCTAAGTC
* * * * * *
13276491 AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCTGGATGCGTAAGTCGAGGATT
775 AACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATC
* * * * * *
13276556 GGTCGGGTCCCCCTTTACGTGCTGTCGATCCTGCTATCGTAACCCTTGGT-TCGGTC
840 GGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCT-GGTC
* *
13276612 TGATCTTAGACTGGGAATGAACTCCATATGCTTAAGCCAACCGACGAAACGAGCGGGCAGGCGGA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGG-
* * * * *
13276677 AGTACAGGCACTACATCGGCCAGAGAGTCGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAGGT
65 -G-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * **
13276742 GTGTTTAGGGACATCTACATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
128 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
13276807 ATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-T
193 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
13276871 TTTCAAAAATTTTTAAGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGGCCCCAAACT
258 TTTC-AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
*
13276936 TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
322 TGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
13277001 TACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
386 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
13277066 CAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
451 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* * * * *
13277131 GAGGCCAATATAAGGGCCAAGTGCCAGTAACCATCGCACATCATGTGCGCACACCCCCCCACCCC
516 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCC
* * * *
13277196 TCTCTATCGTCGGAACGCCAAT--GCCGTC--G----TCAGGAT--T-C-TCGA--------C--
581 -C-CGATCGTCGGAACCCCAATGCGCCGTCAGGTTCTTCGGGATGCTCCGGCGATGGTGCCCCGG
* * * * * * * *
13277239 -AAAGAAAAATGCGGCAGCAGCACATGCTCTAGCCTAGCATGTGCTGCCACAACCCTCGGTCCAG
644 TGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
13277303 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
709 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* ** * * * * *
13277368 CAACCCACGAAACGAGCATGCGGGTGCTCAGCCAACCAAAGGGGTGGGATGCACAAGTCGGGGAC
774 CAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGAT
* * * * * * * ** **
13277433 CGGTCGGGTCCCCCTGTGTGTGTTTGTCGATCCTAACTGCTGTAA-CTTCAATCCAGTC
839 CGGTCGGGTCCCCCTCTGCGTG-CTGTCGATCCT-ACTACCGCAACCCTCGGTCTGGTC
** * * * * * *
13277491 CAATCTAAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGTGGGC-GG-GCG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGG
* * * *
13277554 GTGGGCATTACGTCGGCCAGAGAG-CGGGATGCGCAAGCCGTGGATCGATAAGGTGGTA-GTGGC
66 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
13277617 TTTAGGCA-ATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
13277681 GTCCGTTAAGCCTTCACATGAAGTTTCAT-GCAAGACGACTCATTTT-T-TATTTCATGA-TTTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
13277742 CAAAACGTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTCTG-CCCAAACTTA
261 C-AAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT-GGCCCCAAACTTG
* * * * *
13277806 TTAGGACATGATCCTTGTATTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTATA
324 GTA-GACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
13277871 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTTCTGGCAGCA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
13277936 AACCTGTAAAGTCTCAAATGCTCTTTAA-GGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAGG
* *
13277999 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTTAGCCC
517 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC---GACC
* ** * *
13278064 CCCCGATCGCCGGAACCCCAAT--GCCGTC-GG----TCAAG-TTCTCCGGTGATGGTGCCCCGG
579 CCCCGATCGTCGGAACCCCAATGCGCCGTCAGGTTCTTCGGGATGCTCCGGCGATGGTGCCCCGG
* * * * * *
13278121 TGAAGAAAAATTCAGCACCAGCATAATGTCCGAGCCCAGCATGTGCAGCCGCAACCCTCGGTCTG
644 TGAAGAAAAATACGGCACCAGCA-CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* *
13278186 GTCCGATCTTAGACTGGGAACGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
708 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
** *
13278251 TCAACCCACGAAACGAGCATGTAGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGA
773 TCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGA
* * * * *
13278316 TCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTGCCGTAACCCTCGGTCTGGTC
838 TCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGGTC
** *
13278374 CAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-A--C-GG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGG
* *
13278434 GCGGGCACTATGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
66 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
13278499 TTTAGGCACATCTTCATATTTCTATGTGCCAAAT-CTATTTTTTTGGCTTGTAAATTCATACAAT
131 TTTAGGCACATCTTCATATTTCTACGTGCC-AATGCCATTTTTATGGCTTGTAAATTCATACAAT
13278563 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * ** * *
13278628 TAAAACCTTTTACGGTTCGCTATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGG
260 TCAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
13278693 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
325 TAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
** * * *
13278758 AAGATTTTGTGAAAAATTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATGGCTACTGGTAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
13278823 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * * *
13278888 GCCAATATAAGGGCCAAGTACCAACACCCATCGCACATGATGTGCGGACACCCCCCTGGCCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCC
* * * * **
13278953 AGATCGTTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCATGCTCCGGCGATGGGGCCCCGAC
583 -GATCGTCGGAACCCCAATG-CGCC-GTCAGGTTCTTCGGGATGCTCCGGCGATGGTGCCCCGGT
* * * * * *
13279018 GAGGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGATCCGGT
645 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * * *
13279083 CCGATCTTTGACTAGGAATGAACTTCGTATGCTTAGACTGGGATTGAACTCCGTATGCCTAAGTC
710 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
* * *
13279148 -A---ACGAAACGAGCATACGGGTGCTCAGCTGGCCAGAGGGGCGGG
775 AACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
13279191 CGGGCACTGC
Statistics
Matches: 4527, Mismatches: 636, Indels: 232
0.84 0.12 0.04
Matches are distributed among these distances:
866 1 0.00
867 86 0.02
868 221 0.05
869 23 0.01
870 21 0.00
871 79 0.02
872 12 0.00
873 32 0.01
874 19 0.00
875 1 0.00
877 90 0.02
878 95 0.02
879 65 0.01
880 29 0.01
881 33 0.01
882 23 0.01
883 155 0.03
884 188 0.04
885 23 0.01
886 206 0.05
887 90 0.02
888 3 0.00
889 57 0.01
890 35 0.01
891 62 0.01
892 347 0.08
893 63 0.01
894 211 0.05
895 108 0.02
896 65 0.01
897 174 0.04
898 146 0.03
899 14 0.00
900 455 0.10
901 747 0.17
902 33 0.01
903 110 0.02
904 172 0.04
905 154 0.03
906 27 0.01
907 50 0.01
908 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (895 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGG
GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
CAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGAT
CGTCGGAACCCCAATGCGCCGTCAGGTTCTTCGGGATGCTCCGGCGATGGTGCCCCGGTGAAGAA
AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
CGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTCGG
GTCCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGGTC
Found at i:13277338 original size:26 final size:26
Alignment explanation
Indices: 13277309--13277361 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13277299 CCAGTCCGAT
13277309 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13277335 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13277361 C
1 C
13277362 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13278229 original size:26 final size:26
Alignment explanation
Indices: 13278193--13278245 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13278183 CTGGTCCGAT
13278193 CTTAGACTGGGAACGAACT-TCGTATG
1 CTTAGACTGGGAACGAACTCT-GTATG
*
13278219 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCTGTATG
13278245 C
1 C
13278246 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCTGTATG
Found at i:13279872 original size:26 final size:26
Alignment explanation
Indices: 13279843--13279895 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13279833 CCGGTCCGAT
* *
13279843 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
13279869 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
13279895 C
1 C
13279896 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:13281684 original size:26 final size:26
Alignment explanation
Indices: 13281648--13281701 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
13281638 AATTCAATCT
*
13281648 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACAGGGAATGAACTCCGTATGCC
13281674 TAGACAGGGAATGAACTCCGTATGCC
1 TAGACAGGGAATGAACTCCGTATGCC
13281700 TA
1 TA
13281702 TGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCCGTATGCC
Found at i:13282276 original size:914 final size:901
Alignment explanation
Indices: 13279184--13283466 Score: 5417
Period size: 895 Copynumber: 4.8 Consensus size: 901
13279174 CTGGCCAGAG
* * * *
13279184 GGGCGGGCGGGCACTGCGCCTGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATTGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
13279249 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
13279314 ACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGATGA-TACGTTTTCTATTTTTCAC
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-CGTTTTCTATTTTTCAT
* * * * *
13279378 GATTTTTGAAACTTTTTGCTGTTCAGGATTTTTTAAAATTTTTTCGAAAGAATTTTTGGCCCCAA
195 GATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGG-CCCAA
* * ** * *
13279443 ACTTGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAAGGCAGCTAAAAACTTGTA
259 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
13279508 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
324 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
13279573 GAGCAAACCTATAAAATCTCAGATCCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
389 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
13279638 TAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGG
454 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
** * *
13279702 CCCCTACGATCGCCAGAACCCCAATACCGTCGGTCAGGTTCTCC---G-ACGATGCTCCGGTGAC
519 CCCCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGTACGATGCTCCGGTGAT
* ** * *
13279763 GGTGCCCCAGCGAAGAAAAATATGGC-CTCAACACATG-CCGAGCCCAGCATGTGCTG-TCCCAA
584 GGTGCCCCGGCGAAGAAAAATGCGGCAC-CAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAA
* * *
13279825 CCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCC
647 CCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * * * *
13279890 ATATGCCTATGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGTGCGATGCG
712 GTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCAGCC-GAGGGATGGGATGCG
* * * * * * ** * **
13279955 CAAGTCGGGGGTCGGTCGGGTCCCCAT-TGCGTGCTGTTGATCCTGTTGCC-ACAACCCTTAGTC
776 CAAGCCGAGGATCGGCCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGA-AACCCTCGGTC
* * * * *
13280018 TGGTCCAATCGTAGAC-CGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAAC-GAGCGGGC
840 TGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACAGAGC--GC
* * * * * * *
13280080 GGGCAGGCGAGCAGTATGCCGGTCGGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGAA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
13280145 GGTAGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGGCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
13280210 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * * * * *
13280275 ATTTCCAAAACTTTTTG-GGTTCGAGATTCTTTAAATTTTTTTCGGAAGGAGTTTTGGCAACAAA
196 ATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGC-CCAAA
* * * *
13280339 CTTGGTAGACGTAATCCTTGTATTTTTTTTGGCCTGCACAACAAAATTCAACTAAAAACTCGAAG
260 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
13280404 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACGCTTTAATGGCTATTGGC
325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * * *
13280469 AGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGTGGTTCGATTAGGGAT
390 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
13280534 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGC
455 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * * * * * ** *
13280598 CCCCCCGATCGTCAGAACCTCAATGCCGCCTGTCAGATTCTCC-G-G--CGATGCTCTGACGTTG
520 CCCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGTACGATGCTCCGGTGATG
* * * * *
13280659 GTGCCCCGACGAAGAAAAATGTGGTACCAGCACATGCCTGAGCCCAGCATGTGCT-CCGCAACCC
585 GTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCC
** * * * *
13280723 TCAGTCTAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTC
650 TCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * ** *
13280788 TGTCTAAGTCAACCCATGAAATGAGCGTACAGACGCTCAGCCGGCCGAGGGGGCGGGATGCACAA
715 TGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCAGCCGA-GGGATGGGATGCGCAA
* * * * * * *
13280853 GCC-AGGGATCGACCAAGTCCCCCTCTGCATGCTGCCAATCCTGTTGCCGCAACACC-CGATCTG
779 GCCGA-GGATCGGCCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGAAAC-CCTCGGTCTG
* * * *
13280916 ATTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-TGA--GC
842 GTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACAGAGCGC
* * ** *
13280973 GGGCGGGCGAGTACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGAAGATCAATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
13281038 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
13281103 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTTG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * **
13281168 ATTTTCAAAACTATTTGCGGTTCGGGATTTTTTAAAATTTTTTTTGAAGGCA-TTTTGGTCCCAA
196 ATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-ATTTTTGG-CCCAA
** * * *
13281232 ACTTGGTAGACGTGGCCCTTGTATTTTTTTTGCCGTGCATAAAAAAATTCAGCTAAAAACTCGAA
259 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
13281297 GTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
324 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
13281362 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGCTTGATGAGGGA
389 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*** * *
13281427 TAGTTTGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCTG
454 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-G
** ** *
13281492 GCCCCCCCGATCGCTGGAACCTTAATGCTG-CTGGTCAGGTTCTCCGGGGATGCTAAGGCGATGC
518 GCCCCCCCGATCGCCAGAACCCCAATGCCGTC-GGTCAGGTTCTCC--GG-TG-T-A--CGATGC
* * *
13281556 -CACGGTGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGTATGTGC
575 TC-CGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** * * * *
13281620 TGCTGCAACCCTCAGTCCAATTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAGACAGGGAA
639 TGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* ** *
13281685 TGAACTCCGTATGCCTATGTCAACCCAAAAAATGAGCGTGCAGGCGCTCAGCCAGCCAGAGGGAT
704 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCAGCC-GAGGGAT
* * * ** * *
13281750 GGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCTTGCTATCGATCCTACTGTCGAAACC
768 GGGATGCGCAAGCCGAGGATCGGCCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGAAACC
*
13281815 CTCGGTCTGG-TCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGA
833 CTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAC-A
13281879 GTAGGCGAAC
896 G-A-GCG--C
* * * * * * *
13281889 GAGCGGGCGGGCACTACGCCGACCAGAGAGAC-CGATGCACAAGTCGTGGATCGATAGGATCGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
13281953 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
13282018 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
*
13282083 A-TTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTTGCCCTAAA
196 ATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCC-AAA
* * *
13282147 CTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAG
260 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
13282212 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
13282277 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGAT
390 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
13282342 AGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
455 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * * * * * *
13282407 CCCCCCG---GCC--CA-CCCGAT--CGTCGGAACACCAGTGC-CGTCGGT-TA-GGTTCTCC--
520 CCCCCCGATCGCCAGAACCCCAATGCCGTCGG-TCA--GGTTCTC--CGGTGTACGATGCTCCGG
* * * * * * * *
13282459 -GACGATGCTCCGGTGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGC
580 TGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGC
* * * *
13282523 AACCCTCGGTTCGGTCCAATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
645 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
13282588 CTGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GG-G--CAG--A--CTA--GAT--G--G-
710 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCAGCCGAGGGATGGGATGC
* * * * * *
13282638 GCAAGTCGAGAATCGGCCAGGTCCTCCTCTGCGTACTGCCGATCCTGCTGCCGTAACCCTTGGTC
775 GCAAGCCGAGGATCGGCCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGAAACCCTCGGTC
* *
13282703 GGGTTCGATCTTAGACTGGAAATGAACTTCGTATGCCTAAGCCAACCGAC-AGAACA-AGCGGAC
840 TGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGA-AACAGAGC-G-C
* * * ** *
13282766 GGGCGGGCAGGCACTACTCCGGCCAGAGAGATGGGATGCGCAAGTTGTGGATCAATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
**
13282831 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
13282896 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* *
13282961 ATTTTTGAAACTTTTTGCGGTTCGGCATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAA
196 ATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGG-CCCAAA
* * * * * *
13283026 CTTGATAGACGTAATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCACCTAAAAACTCAAAC
260 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
13283091 TGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
13283156 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
390 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
13283221 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCCGA
455 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGG
*
13283286 CCCCCCCGATCACC-GAAACCCCAATGCCGTCGGTCAGGTTCTCC---G-ACGATGCTCCGGTGA
519 CCCCCCCGATCGCCAG-AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGTACGATGCTCCGGTGA
* * *
13283346 TGGTGCCCCGACGAAGAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-TCGTAA
583 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAA
* * * *
13283410 CCCTCAGTCTGGTCCGATCTTAGACTGAGAGTGAACTCCATATGCTTAGACTGGGAA
647 CCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
13283467 AGGACAATTT
Statistics
Matches: 2936, Mismatches: 376, Indels: 161
0.85 0.11 0.05
Matches are distributed among these distances:
877 31 0.01
878 155 0.05
879 296 0.10
880 18 0.01
881 100 0.03
882 9 0.00
883 2 0.00
884 2 0.00
885 107 0.04
886 9 0.00
887 2 0.00
888 7 0.00
889 1 0.00
891 1 0.00
893 198 0.07
894 266 0.09
895 482 0.16
896 283 0.10
897 179 0.06
899 1 0.00
900 4 0.00
901 2 0.00
903 1 0.00
904 1 0.00
905 3 0.00
906 5 0.00
907 68 0.02
908 209 0.07
909 4 0.00
910 3 0.00
911 1 0.00
913 14 0.00
914 292 0.10
915 151 0.05
916 29 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
ATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
CCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGTACGATGCTCCGGTGATGG
TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCT
CAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCAGCCGAGGGATGGGATGCGCAAGC
CGAGGATCGGCCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGAAACCCTCGGTCTGGTTC
GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACAGAGCGC
Found at i:13282580 original size:26 final size:26
Alignment explanation
Indices: 13282544--13282595 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13282534 CGGTCCAATT
13282544 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
13282570 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13282596 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:13284892 original size:26 final size:26
Alignment explanation
Indices: 13284854--13284906 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13284844 CTGGTTCGAT
*
13284854 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
* *
13284880 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
13284906 C
1 C
13284907 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:13286661 original size:26 final size:26
Alignment explanation
Indices: 13286625--13286703 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
13286615 CCGGTCTGAT
13286625 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13286651 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
13286677 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13286703 C
1 C
13286704 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:13287578 original size:26 final size:26
Alignment explanation
Indices: 13287549--13287601 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13287539 TTGGTCCGAT
13287549 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13287575 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13287601 C
1 C
13287602 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13287779 original size:4 final size:4
Alignment explanation
Indices: 13287770--13287799 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
13287760 GACGAAACGA
*
13287770 GCGG GCGG GCGG GCGG GCGG GCGG GTGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
13287800 ACTACGCCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.23, G:0.73, T:0.03
Consensus pattern (4 bp):
GCGG
Found at i:13288726 original size:896 final size:896
Alignment explanation
Indices: 13284003--13295461 Score: 13846
Period size: 899 Copynumber: 12.8 Consensus size: 896
13283993 CAAATTAAGA
** * * * * *
13284003 TATGCCTAAGTCAACAGACGAAACGAGTGTGCGGGCACTCAGTCAACCAGAGGGGCGAGATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGA-GGGCGGGATGCGC
* * * * *
13284068 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCACAACCCTCAGTTCG
65 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAATTCG
* * * * *
13284133 GTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGC
130 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * **
13284198 GGGTGAGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAAAGTGGTAGGTG
195 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
13284263 GGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
260 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
13284328 TGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTT
325 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * * *
13284393 TTGAAACTTTTTACGATTTGGCATTTTTTAAAATTTTTTTGGAAGGATTTTTGGGCCCCAAACTT
390 TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTT
* * *
13284458 GGTAGACGTGATCCTTGT-TTTTT-TTGGCATGCACAAAAAACTTTAGCTAAAAACTCGAAGTCT
454 GG-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * * * * * *
13284521 ACAAAATTTTGTGGCCATTTGAAAAAAGTTTCCCCATTTTAGACACTTTAACGCCTACTAGCCGC
518 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
13284586 AAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-G
583 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
13284650 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCC
648 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCC
* * * *
13284715 CCAGATCGTCGGAACCCCAATGCCGCCGATCAAGTTCTCCGGTGATGCTCCAGCGATGGTGCCCC
712 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-GCGATGGTGCCCC
* * *
13284780 GACGAAGAAAAAT-CTGGCACCAGCACATGCCCTGAGCCCAGCATGTGCTACCGCAACCATCGGT
776 GGCGAAGAAAAATGC-GGCACCAGCACATGCCC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
13284844 CTGGT-TCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCTG
839 CTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * ** *
13284902 TATGCCTAAGTCAACTCACAAAACGAGCATGCGGGCGCTTAGCCGGCCAGAGAGGTAGGATACGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG-GGCGGGATGCGC
** * * * ** **
13284967 AAGTTGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCTATCCTACTGCCGCAACCCTC-GGTCT
65 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAATTC-
* ** * * * *
13285031 GATCTAATCTTAGATTGGGAATGAACTCCGCATGCCTAAGCTAACCGATGAAACGA----GCGGG
129 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * **
13285092 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAAACGTGGATCGATAGGGTGGTAGGT
194 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* **
13285157 GGGTTTAGGCACATCTTCATATCTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
259 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
13285222 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCATTTTCTATTTTTCATGACT
324 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * * *
13285287 TTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGCGTTTTGGCCCCAAACTT
389 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * * *
13285352 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTTAAAACTAGAACTGT
454 GG-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
13285417 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGC
518 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
** *
13285482 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCAGTGAGTTCTTGAGGTTTGATGAGGGATAGG
583 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
13285547 GAGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGGGCCCG
648 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * * * *
13285611 CCGATCGTCGGAACCCTAATGCCACCGATCAGGATCTCTGACGATGCTCCGACGATGGTGCCCCG
713 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG-CGATGGTGCCCCG
* * *
13285676 ACGAAGAAAAATGTGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-T-
777 GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
13285735 G---G-TC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCG
842 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
13285770 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGAGGGATGTGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGA-GGGCGGGATGCGC
* * * * * * * *
13285835 AAGCCGGGGATCGACCGGGTCGCCCTCTACGTCCTACTGATCCTGTTG-TCGCAACCCTC-AGTC
65 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT-ACAACCCTCAATTC
** * *
13285898 TGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGGCCAACCGACGAAACGAACGGGCGG
129 -GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--
* * * *
13285963 ATGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGTCGTGGAACGATAGGGTGG
191 --GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
13286028 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
254 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
13286093 ATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTGTCTATTTTTCA
319 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
** * * * **
13286158 CGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGTTCCA
384 CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
13286223 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
449 AACTTGG-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
13286288 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTG
513 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
13286353 GCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTCCTCGATGTTTGATGAGGG
578 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
13286418 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
643 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* ** * * *
13286483 ACCCCCCGATCGTCAAAACCGCAATGCCTCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
708 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG-CGATGGTG
** *
13286548 CCCCGGCGAAGAAAAATGTTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCG
772 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C-
*
13286613 GTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGC
834 -T-C-G---G----T---CT-GG--T---C-T-G-AT-CTTAGACTGGGAATGAACTCCGTATGC
13286678 TTAGACTGGGAATGAACTCCG
876 TTAGACTGGGAATGAACTCCG
* * * *
13286699 TATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGT
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGA-GGGCGGGATGCGC
* * * ** * * *
13286764 AAGTCGGGGATCGACCGGATCCCCTTCTGCGTGCTATCGATCCTGGTGC-CCTAACCCTCGA-TC
65 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTAC-AACCCTCAATTC
* * * * *
13286827 TAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACAGATGAAACCAGCGGGCGG
129 -GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG
* * * *
13286892 ACGGGCGGGTGGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGCGGTGGATCGATAGGGTGG
190 -CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *** *
13286957 TAGGTGGATTTAGGTACATCTTCATATTTCTGTGTGCCAATACCATTTTTATGGCTTGTAAATTC
254 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
13287022 ATATAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
319 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* *
13287087 CGATTTTTGAAACTTTTT-CGGTTCAGGATTTTTTAAAATTCTTTT-AGAAGGAGTTTTGGCCCC
384 CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCC
* * * * *
13287150 AAACTTGGTAGACATGATCGTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAAATTG
448 AAACTTGG-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
13287215 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTATT
512 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
13287280 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTATGGGTTGTCAAGGTTTGATGAGG
577 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
13287344 GATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCAC-CCCCCCG
642 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
** * * *
13287408 GCCCCCCCGATCACCGAAACCCCAATGCTGCCGGTTAGGTTCTCC-AGTGATGCT-CG-GTATGG
707 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-TGATGCTCCGCG-ATGG
* ** * *
13287470 TGCCCCGGTGAAGAAAAATGCATCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
770 TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* *
13287535 CGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
835 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
13287597 TATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCTACCAGAGGGGCGAGACGCAC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGA-GGGCGGGATGCGC
* * *
13287662 AAGCCAGGGATTC-AGTC-GGT---CC-CT-C-T-CTG-CG----TGCTGCTACAACCCTCAATC
65 AAGCCGGGGA-TCGA-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAATT
13287713 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
128 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------
*
13287778 GCGGGCGGGCGGGCGGGTGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGA
185 GCGGGCGGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
13287843 CAGGTTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACGTGTCAATGCCATTTTTATGGCTT
246 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
*
13287908 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACGACTCGTTTTCT
311 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * *
13287973 ATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAATTT
376 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
13288038 TGGGCCCAAACTT-G-GACATGATCCTTGTATTTTTGTTGCCATGCACAAAAAAATTCAGCTAAA
441 TGGCCCCAAACTTGGAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* ** *
13288101 AACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCTAATTTTAGACACTTTAATG
506 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
13288166 GCTACTGGCAGTAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCAAGGTTTG
571 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
13288231 ACGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
636 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* *
13288296 CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCAGC
701 CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-GC
* * * * * * *
13288361 GATGGTGCCCCAGCGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCATCATGTTCTGCTGGA
765 GATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
13288426 ACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTC-TCATGCTTAGATTGGGAATGAACT
830 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGT-ATGCTTAGACTGGGAATGAACT
*
13288490 CTG
894 CCG
* * * * * * * * ** * *
13288493 TATGCCTAAGTCGACCCACAAAATGAGCATGCGGGCACTGAACTGACCAGAGGGATAGGTTGCAC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGG-CGGGATGCGC
* *** *
13288558 AAGCCGAGGG-TTGGTTGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCTACAACCCTCAATTC
65 AAGCCG-GGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAATTC
** * * * *
13288622 AATCCAATCTTAGACTGGGAATGACCTCCATACGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
129 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* *
13288687 CGGG-GAGGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGG
194 CGGGCG-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
13288751 TGTGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
258 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
13288816 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTTGTTTTCTATTTTTCACGAT
323 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * * * *
13288881 TTTCAAAACTTTATGCGGTTCGAGATTTTTTAAATTTTTTTCGGAGGGAGTTTTGGCCCCATACT
388 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
13288946 TGGTAGACGTGATCCTTGTATCTTTT-TTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGT
453 TGG-AGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
13289010 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGACA
516 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
13289075 GCAAACCTG-AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATA
581 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * *
13289139 GGGGGCCAATATAAGGGCCAAGAACTAGCACTCATCTCACATCATGTGCGCACACCCCCCCGACC
646 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
* * * * * * *
13289204 CCTCCGATCGCCGG-ATCCCAATGCCGCCGGTCAGGTTGTCCGATGATCCTCTGGCGATGGTTCC
710 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTC-CGCGATGGTGCC
* * *
13289268 CCGGTGAAGAAAAATGCGGCCCCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
774 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
13289333 ATGGTGTGATCTTAGACTGGGAATGAACTCCGTATGCTT-GACTGGGAATGAACTCTG
839 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
13289390 TATGCCTAAGTCAACCTA-GTAAACGAGCATGCGGGTGCTCAGCC-AGCCAGAGGGGCGGGATGT
1 TATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGA-CCAGA-GGGCGGGATGC
* * * * ** * * *
13289453 GAAAGCCAGGG-TCGACCGGGTCCCCTTCTGTGTGCTATCGATCCTGCTACTGCAACCCTCAGTT
63 GCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAATT
* * * * * *
13289517 CGATCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCAAACCGATGAAACAAACGGGCGG
128 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG----AAACGAGCGG
* * * *
13289582 GTGGGAGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGG
189 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
13289647 TTGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
254 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * * *
13289712 ATATAGTGGTCCCTTAAGCCTTCACGTGAAGATTCATTGAAAGACGACTCGTTTTCTATTTTTCA
319 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * * * *
13289777 TGATTTTTAAAACTTTTTACGGTTTGGGATTTTTAAAAATTTTTTCAGATGGAGTTTT-GCCCAA
384 CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
13289841 AACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
449 AACTTGG-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
13289906 AGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTG
513 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
13289971 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGATTTCTCGAGGTTTGATGAGGG
578 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
13290035 ATAGGGGGCCAATATAAGGGCCAGGAACCAGCACCCATCGCACATCATGTACGCACACCCCGCCC
643 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCC
* ** * * * * *
13290100 GACCCCCCCGATCACCGGAACACCAATGCTGCTGATCAGGTTCTCCGTTGATGCTCCGACGATGG
706 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG-CGATGG
* ** * * *
13290165 TGCCCCGGCAAAGAAAAATGCAACACCAGCACATGCCCGAGCCCAACATGTGCTACCACAACCCT
770 TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
13290230 CGATCTGATGC-GATCTTATACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
835 CGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * *
13290292 TATGCCCAAGTCAACCCA-TAGAACGAGCGTGCGGGCGCTCAGCC-ACCAGAAGGGCGGGATGTG
1 TATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGACCAG-AGGGCGGGATGCG
** * ** * * *** *
13290355 CAAGCCGGGGATCGGTCTGGTCCCCCTCTATGTGCTGCCAATCCTTCTGCCGTAACCCTCAATCC
64 CAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAATTC
* * * * * *
13290420 AGTCTGATCTTAGACTGGGAATGAACT-CATATGCCTAAGCCAACCAACAAAACGAGGGGGCGGG
129 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * * * *
13290484 CGGGCGGGCACTACGTCGGGCAGAGAGACGGGATGCGCAAGCTGTGGATCGAAAGGGTGGCAAGT
194 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * *
13290549 GGGTTTAGGTACATCATCGTATTTCTGA-GTGCCAATGCCATTTTTATGGCTTGCAAATTCATAC
259 GGGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
13290613 AATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGC-A-A-GA--CG------ATTTTTCACGAT
323 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* *
13290667 TTTTGAAACTTTTTGCGTTTCGAGATTTTTCT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
388 TTTTGAAACTTTTTGCGGTTCGGGATTTTT-TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* *
13290731 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGT
452 TTGG-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
13290796 GTACAAGATTTTGTGGCCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGTA
516 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* **
13290861 GCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGCATGAGTTCTCGAGGTTTGATGAGGGATA
581 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
13290926 GGGGGCCAATATAAGGGCCATA-TACGAGCACCCATTGCACATCATGTGCGCACACCCCCCGG-C
646 GGGGGCCAATATAAGGGCCA-AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * *
13290989 CCCCCGATCATCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
710 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-GCGATGGTGCC
* * *
13291054 CCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGT
774 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
13291119 CTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCGTAGACTGGGAATGAACTCCG
839 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
13291177 TATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAACCGACCAGAAAGGCGGGATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAG-AGGGCGGGATGCGC
* *** * * * * * **
13291242 AAGCTGGGGATCGGTTGGGTCCCCTTCTGCGTGCTGTCGATCTTGCTACCACAACCCTC-GGTCT
65 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAATTC-
* ** *
13291306 GGTCCAATCTTAGACTATGAATGAACTCCGTATGCCTAAGCCAACCGATG-AACGAGTGGGCGGG
129 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGG
* * *
13291370 CGGGGCGGGCGGGCATTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGACCGATAGGGTGG
190 C-GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * **
13291435 TAGGTGGGTTTAGGCACATCTGCATATTTCTGCATGCCAATGACATTTTTATCACTTGTAAATTC
254 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
13291500 ATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
319 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* ** **
13291565 TGATTTTTGAAACTTTTTGCGGTTCATGATTTTTTAAAATTTTTTCGGATCGAGTTTTGGCCCCA
384 CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
** * * * *
13291630 TGCTTGGTAGACGTGATCCTTGTATTTTTGTTGCCATGCATAAAACAATTTAG-TGAAAAACTCG
449 AACTTGG-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCG
* *
13291694 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACC
512 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
13291759 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
577 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
13291824 GATAGGGGGCCAATATAAGGGCTAAGTACCCA-TACCCATCGCACACCATGTGCGCACACCCCCC
642 GATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGCGCACA--CCCC
* * * * * * *
13291888 TCCGAG-CCCCCCGATAGCCGGAACCCCAATGCCACCGGCCAAGTTCTCCGACGATGCTCTGGCG
704 -CCG-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTC-CGCG
* * * * * * * * * **
13291952 ATGGTGCCCCAGTGAAGAAAAATGCAGCATCAACACATTCCCTAGTCCAACATGTGCTATCGCAA
766 ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * * *
13292017 CCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTATACTGGGAATGAACTCC
831 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
13292082 G
896 G
* * * * *
13292083 TATACCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACAAGAGGGGCGAGATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGA-GGGCGGGAT--GC
* * * ** * *
13292148 GCAAGCTGAGGATCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTGCCACAACCCTCGA-T
63 GCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAATT
* *
13292212 CTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA----GCG
128 C-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * *
13292273 GGCGGGCGGGCACTACGTCGG-CAGAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTAG
192 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
***
13292337 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAACATCATTTTTATGGCTTGTAAATTCATA
257 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * *
13292402 CAATGGT-CCTTAAGCTTTCACGTGATGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGA
322 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * * *
13292466 ATTTTGAAACTTTTCGAGGTTCGAGATTTTTTAAAATTTTCTCGAAAGGAGTTTTGGCCCCAAAC
387 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
13292531 TAGGTAGACGTGATCCCTT-TTTTCTTTTTTGGCATGCTA-AAAAAAATTCAGCTCAAAACTCGA
452 TTGG-AGACGTGAT-CCTTGTATT-TTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGA
* * *
13292594 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTTAGACACTTTAATGACTACTG
513 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
13292659 GCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
578 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
13292724 -TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTGG
643 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * ** **
13292788 CCCCCCCGATCGTCGAAACCCCAATACCGCCGGTCAGGTTCTCCGACAATGCTCCAATGATGGTG
708 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-GCGATGGTG
* * * * * * *
13292853 CCTCGG-AAAGAAAAATGTGGCACCAGCACATTCTCGAGTCCAGCATGTGCTGCCACAA-CC-C-
772 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
*
13292914 -TC--G---G----T---CT--G-AT----T-CG-ATG-TTAGACTGGGAATGAACTCTG
837 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
13292951 TATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACAAAAGGGGCGAGATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGA-GGGCGGGATGCGC
* *
13293016 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTG-TCGCAACCCTC--TGT
65 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT-ACAACCCTCAAT-T
* * * * *
13293078 CTGGTCTGATCATAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGTGGGTG
128 C-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
*
13293143 GGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
192 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
13293208 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGTCATTTTTATGGCTTGTAAATTCATA
257 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
13293273 CAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA
322 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * * *
13293338 TTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCAGAAGCATTTTTGGCCCCAAAC
387 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
13293403 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCAAAGT
452 TTGG-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
13293468 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
516 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
13293533 GCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGGTGTGAGTTCTTGAAGTTTGATGAGGGAT
581 GCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
13293598 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
645 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * *
13293663 CCCCCGATCGCCGGAACCCCAACGTCGCCGGTCAGG-T-T-C-----T--TCGGCGATGGTGCCC
710 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGCGATGGTGCCC
* * * * * *
13293718 CGGTGAAGAAAAACGTGGCACCAGCACATGCCCTAGCCTAGCATGTGCTGTCGCAACCC-CGGTC
775 CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
13293782 TGATCTGATCTTAGACTGGGAATGACCTTCGTATGCTTAGACTGGGAATGAACTCCG
840 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
13293839 TATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGTGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGA-GGGCGGGATGCGC
* * ** * * * * * * * *
13293904 AAGCCGAGGATCGGCTAGCTCCCTCTCCGCATGTTGTCGATCCTGCTACTACAACCCTCAATTCA
65 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAATTCG
** * * *
13293969 GTCTAATATTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGAGGGC
130 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGC
* * * ** *
13294034 GGGCGGGTGGGCACTACGTCGGCCAGAGAGGCGGGATGCGTTAGCCATGGATCGATAGGGTGGTA
191 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* ** *
13294099 GGTGGGTTTAGGCACATGTTCATATTTCT-GGTCGCCAATGCCATTTTTATGGCTTCTAAATTCA
256 GGTGGGTTTAGGCACATCTTCATATTTCTACAT-GCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
13294163 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTGGTTTTCTATTTTTCAT
320 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* ** * * * *
13294228 AATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCCAA
385 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* *
13294293 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
450 ACTTGG-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
13294358 GTGTACAAGATTTTGTGATCATTTGAAAAAACTGTCCCCATTTCAGACACTTCAATGGCTACTGG
514 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
13294423 CAGCAAACCTGTTAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
579 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
13294488 TAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAC
644 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* *
13294553 CCCCTCTATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC---GA-------C-A-------
709 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGCGATGGTGCC
* * *
13294600 ------AAGAAAAATGCAGCACCAGCACAT-CCCGAGCCCAGCATGTGTTGTCGCAACCCTCGGT
774 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
13294658 CTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTACG
839 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * *
13294716 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGTCCG-CCAGAGGGGCGAGATGCG
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGACCAGA-GGGCGGGATGCG
* * * ** * *** *
13294780 CAAGACGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATTGCAACCCTTGGTCC
64 CAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAATTC
13294845 GGTCCGATCTTAGACTGGGAATGAACTCC-TATGCCTAAGCCAACCGACGAAACGA--------G
129 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* *** * * * * *
13294901 CGGGCGAGCACTACATTGGCCAGGGAGGCGGGATGTGTAAGCCGTGGATCGATATGGTGGTAGGT
194 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
13294966 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACA
259 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * *
13295031 ATGGTACCTTAAGCCTTGACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTAACAATT
324 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* ** *
13295096 TTTGAAACTTTTTGTGGTTTAGGATTTTTTAAAA-TTTTTGGGAAGGAGTTTTGGCCCCAAACTT
389 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
13295160 CGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA-AAAAAAATTCAGCTACAAACTCGAAGTGT
454 -GGAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
13295224 ACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGC
518 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * * * *
13295289 AAACCTATTAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTTTCAAGGTTTGATGAGTGATAGG
583 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
13295354 GGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCTCCTTGGCCT
648 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CC-CGGCCC
* * * * *
13295419 ACTCTATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGA
711 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
13295462 CGAAGAAAAA
Statistics
Matches: 9204, Mismatches: 1100, Indels: 545
0.85 0.10 0.05
Matches are distributed among these distances:
862 211 0.02
863 104 0.01
864 248 0.03
865 2 0.00
866 110 0.01
868 249 0.03
869 6 0.00
870 30 0.00
871 241 0.03
872 159 0.02
873 96 0.01
875 3 0.00
876 523 0.06
877 322 0.03
878 7 0.00
879 2 0.00
880 2 0.00
881 3 0.00
884 4 0.00
885 204 0.02
886 219 0.02
887 186 0.02
888 250 0.03
889 4 0.00
890 20 0.00
891 281 0.03
892 537 0.06
893 86 0.01
894 347 0.04
895 426 0.05
896 650 0.07
897 277 0.03
898 525 0.06
899 780 0.08
900 314 0.03
901 177 0.02
902 411 0.04
903 5 0.00
904 5 0.00
905 5 0.00
906 214 0.02
907 2 0.00
908 172 0.02
909 5 0.00
910 1 0.00
911 1 0.00
912 1 0.00
913 1 0.00
915 1 0.00
918 2 0.00
919 1 0.00
920 1 0.00
921 1 0.00
922 1 0.00
923 3 0.00
924 59 0.01
925 3 0.00
926 49 0.01
927 81 0.01
928 194 0.02
929 375 0.04
930 1 0.00
931 1 0.00
932 2 0.00
933 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGCGGGATGCGCA
AGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCAATTCGG
TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGCGATGGTGCCCCGGCGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
Found at i:13289381 original size:25 final size:25
Alignment explanation
Indices: 13289347--13289394 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
13289337 TGTGATCTTA
13289347 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
*
13289372 GACTGGGAATGAACTCTGTATGC
1 GACTGGGAATGAACTCCGTATGC
13289395 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:13290280 original size:26 final size:26
Alignment explanation
Indices: 13290244--13290296 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13290234 CTGATGCGAT
*
13290244 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13290270 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13290296 C
1 C
13290297 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13291167 original size:26 final size:26
Alignment explanation
Indices: 13291131--13291181 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13291121 GGTCCGATCT
*
13291131 TAGACTGGGAATGAACTTCGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
13291157 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
13291182 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:13292064 original size:26 final size:26
Alignment explanation
Indices: 13292035--13292085 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13292025 CCGATCCGAT
13292035 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13292061 CTTATACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
13292086 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13293827 original size:26 final size:26
Alignment explanation
Indices: 13293791--13293843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13293781 CTGATCTGAT
* *
13293791 CTTAGACTGGGAATGACCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13293817 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13293843 C
1 C
13293844 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13294697 original size:26 final size:26
Alignment explanation
Indices: 13294668--13294720 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13294658 CTGGTCTGAT
13294668 CTTAGACTAGGAATGAACT-CTGTATG
1 CTTAGACTAGGAATGAACTAC-GTATG
*
13294694 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
13294720 C
1 C
13294721 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:13297078 original size:26 final size:26
Alignment explanation
Indices: 13297042--13297094 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13297032 CTTGTCCGAT
13297042 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
13297068 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
13297094 C
1 C
13297095 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:13298889 original size:900 final size:901
Alignment explanation
Indices: 13295890--13299808 Score: 5133
Period size: 900 Copynumber: 4.4 Consensus size: 901
13295880 TATTCCTAGC
* *
13295890 CTACCGGCAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
13295955 TGAGAGATAGGGTGCCAATATAAGGGTCAAGTACCAGCACCCATCGCTA-ATCATGTGCGCACA-
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC-ACATCATGTGCGCACAC
* * * * * * **
13296018 CCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGTCGGTCCGGTTCTTCGACGATGCTCTGGC
130 CCCCCGGCCCCCCCGATCGCCGGAACCCCAA-GCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGC
* *
13296083 AATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCA
194 AATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* *
13296148 A--C-----CC--T-CGATC-T--A----G--T---C-CGATA---TTAGACTGGGAATGAACTT
259 ACCCTTGATCCTGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
* * * * * *
13296187 CGTATGCCT-ATTCAA-CCACGAAACAAGTGTACGGGCGCTTAGCCGGCCAGAGGGGCGAGATAC
324 CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATAC
* * * *
13296250 GTAAG-CGGGGATCGATC-GAGTCCCCCTCTG-TGTGCTGTCAATCCTGCTACTGTAACCCTTGG
389 GCAAGCCGGGGATCGATCAG-GTCCCCCTCTGCT-TGCTATCAATTCTGCTACTGTAACCCTCGG
* * * * * *
13296312 TCCGGTCTGATCTTAGACTGGGAATGAATTCTGTATGCCTAAGCCAATCGACAAAACGAGTAGGC
452 TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAAC----AGGC
* * * *
13296377 GGGCGGCGGGCAG-GCGGGCACTATGTCA-GCCAGAGAGACGGGATGCGCAAGCAGTA-GATCGA
513 GGGAGACGGGC-GCGC-GGCACTATGT-AGGCCAGAGAGACAGGATGCGCAAGCCG-AGGATCGA
* * *
13296439 TAGGGTTGTAGGTGGGTTTGGGCACATCTTCAGATTTCTGCATGCCAATGCCATTTTTATGGCTT
574 TAGGGTGGTAAGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * * *
13296504 GTAAATTCATACAATGGTCCTTTAAGCTTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCT
639 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
13296569 ATTTTTTACGATTTTCAAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTT
704 ATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAATT
* * *
13296633 TGGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTT-TTGGCATGCA-TAAAAAATTCAGCTA
768 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
13296696 AAAACTCAAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTA-ACACTTTA
833 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTAGACACTTTA
13296760 ATGG
898 ATGG
* *
13296764 CTACTGGCAGCAAGCCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
13296829 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* *
13296894 CCCCGGCCCCCCCGATCGTCGGAACCCCGAAGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAGCA
131 CCCCGGCCCCCCCGATCGCCGGAACCCC-AAGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCA
* * *
13296959 ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAA
195 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
*
13297024 CCCTTGATCTTGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
260 CCCTTGATCCTGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
* * * *
13297089 GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCATAGGGGCGGGATGCG
325 GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATACG
* * *
13297154 CAAGCCGGGGATCGA-CTAGGTCCTCCTTTGCTTGCTATCAATTCTGCTGCTGTAACCCTCGGTC
390 CAAGCCGGGGATCGATC-AGGTCCCCCTCTGCTTGCTATCAATTCTGCTACTGTAACCCTCGGTC
* *
13297218 CAGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGATGAAACGGGCGGGCAG
454 CAGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACAGGCGGG-AG
* * *
13297283 ACGGGCGCGCCGGCACTATGTAGGCTAGCGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGG
518 ACGGGCGCG-CGGCACTATGTAGGCCAGAGAGACAGGATGCGCAAGCCGAGGATCGATAGGGTGG
**
13297348 TAAGTGGGTTTGGGCACATCTTCATATTTCTGCATGTGAATGCCATTTTTATGGCTTGTAAATTC
582 TAAGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
13297413 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
647 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * *
13297478 CGATTTTTGAAAA--TTTTACGGTTCAAGATTTTTTAAAATTTTCTCAGAAGGAGTTTTTGCCCC
712 CGA-TTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCC
** * *
13297541 AAACTTTTTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
776 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
* *
13297606 AAGTGTACAAGATTTTGTGCCCATTTGAAAAAAGTGTCCCCAATTCTAGACACTTTAATGG
841 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTAGACACTTTAATGG
*
13297667 CTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* ** *
13297732 TGAGGGATAGGGGGCCAATATAAGGGCTAAGTATGAGCACCCATCGCACATCATGTGCGAACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* **
13297797 CCCCCGGCCCCCCTCGATCGCCGGAACCCCAAAGCCCCCGGTCAGGTTCTCCGGCGATGCATTGA
130 CCCCCGGCCCCCC-CGATCGCCGGAACCCC-AAGCCGCCGGTCAGGTTCTCCGGCGATGC-TCCA
* * * **
13297862 -CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTTG
192 GCAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * ** * * *
13297926 CAACCC-TCAGTCCCGTCCGATCTTAGACTGCGAATGAACTCTGTAAGCTTAGACAGAGAATGAA
257 CAACCCTTGA-TCCTGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
* * *
13297990 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCAGGA
321 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGA
* * * * ** * * ***
13298055 TACGCAAGCCGGAGATCGGTCAGGTCCCCCTCTGCATGTTGCCGA-TCATCCTACCACAACCCTC
386 TACGCAAGCCGGGGATCGATCAGGTCCCCCTCTGCTTGCTATCAATTC-TGCTACTGTAACCCTC
* * * * * *
13298119 GATCC-GATCCGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACATGC-
450 GGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACAGGCG
* * * * * * * *
13298182 GG-G-C-GG-GTG-GGCACTACGTCGGCCAGAGAGATAGGATGCACAAGTCAAGGATCGATAGAG
514 GGAGACGGGCGCGCGGCACTATGTAGGCCAGAGAGACAGGATGCGCAAGCCGAGGATCGATAGGG
* * * *** *
13298242 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGCACCAATGACACTTTTTATGGCTTGTAA
579 TGGTAAGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAA
* *
13298307 ATTCATACAATGCTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
643 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* **
13298372 TTCATGATTTTTGAAACTTTTTACGGTTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTAG
708 TTCACGATTTTCAAAACTTTTTACGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTT-G
*
13298437 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCCAAA
771 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAA
* *
13298502 AACTCAAAGTTTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAAT
835 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTAGACACTTTAAT
13298566 GG
900 GG
* * *
13298568 CTACTGGTAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTTG
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTG
*
13298633 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
65 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* *
13298698 CCCCCGGCCCCCCCGATCGTCGGAACCCCGAAGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAGC
130 CCCCCGGCCCCCCCGATCGCCGGAACCCC-AAGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGC
* *
13298763 AATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACA
194 AATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* *
13298828 ACCCTTGATCTTGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTC
259 ACCCTTGATCCTGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
** * * * *
13298893 CGTATGCCTAAGTCAACCCATTAAACGAACGTGCGGGCGCTCAACCGGCCATAGGGGCGGGATGC
324 CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATAC
* * * *
13298958 GCAAGCCGGGGATCGACCAGGTCCTCCTTTGCTTGCTATCAATTCTGCTGCTGTAACCCTCGGTC
389 GCAAGCCGGGGATCGATCAGGTCCCCCTCTGCTTGCTATCAATTCTGCTACTGTAACCCTCGGTC
* *
13299023 CAGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGATGAAACGGGCGGGCAG
454 CAGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACAGGCGGG-AG
* * *
13299088 ACGGGCGCGCCGGCACTATGTAGGCTAGCGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGG
518 ACGGGCGCG-CGGCACTATGTAGGCCAGAGAGACAGGATGCGCAAGCCGAGGATCGATAGGGTGG
**
13299153 TAAGTGGGTTTGGGCACATCTTCATATTTCTGCATGTGAATGCCATTTTTATGGCTTGTAAATTC
582 TAAGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
13299218 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
647 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
13299283 CGATTTTCAAAACTTTTTACGGTTTG-GGTTTTTTAAAATTTTTTCGAAAGGAGTTTTTGCCCCA
712 CGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCA
* *
13299347 AACTTGGTAGACGTGATCCTTGTATATTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCG
777 AACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
* *
13299412 AAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGC-AGACACTTTAATGG
841 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTAGACACTTTAATGG
* * *
13299472 CTACTGGCAGCAATCTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
13299537 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
13299601 CCCC-G-----TCGATCGCCAGAACGCCAATGCCGTCGGTCAGGTT-TTC--CG--G---C-G--
131 CCCCGGCCCCCCCGATCGCCGGAACCCCAA-GCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCA
* ** * *
13299649 ATGGTGCCCCAACGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGTTGCCGCAA
195 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * * ** *
13299714 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTC
260 CCCTTGATCCTGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
*
13299779 GCATGCCTAAGTCAACCCACGAAACGAGCG
325 GTATGCCTAAGTCAACCCACGAAACGAGCG
13299809 GGCAGGCAGG
Statistics
Matches: 2656, Mismatches: 316, Indels: 135
0.85 0.10 0.04
Matches are distributed among these distances:
873 1 0.00
874 118 0.04
875 113 0.04
876 2 0.00
877 1 0.00
882 1 0.00
884 1 0.00
885 145 0.05
886 1 0.00
887 1 0.00
888 2 0.00
891 1 0.00
892 1 0.00
893 1 0.00
894 1 0.00
895 4 0.00
896 27 0.01
897 88 0.03
898 89 0.03
899 12 0.00
900 416 0.16
901 351 0.13
902 212 0.08
903 244 0.09
904 280 0.11
905 353 0.13
906 8 0.00
907 102 0.04
908 80 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGGCCCCCCCGATCGCCGGAACCCCAAGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCAA
TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
CCTTGATCCTGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATACGC
AAGCCGGGGATCGATCAGGTCCCCCTCTGCTTGCTATCAATTCTGCTACTGTAACCCTCGGTCCA
GTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACAGGCGGGAGACG
GGCGCGCGGCACTATGTAGGCCAGAGAGACAGGATGCGCAAGCCGAGGATCGATAGGGTGGTAAG
TGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTAGACACTTTAATGG
Found at i:13299784 original size:26 final size:26
Alignment explanation
Indices: 13299732--13299784 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13299722 CCGGTCCGAT
*
13299732 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
13299758 CTTAGACTGGGAATGAACT-TCGCATG
1 CTTAGACTGGGAATGAACTCT-GCATG
13299784 C
1 C
13299785 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:13300473 original size:26 final size:26
Alignment explanation
Indices: 13300444--13300496 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13300434 CCAGTTCGAT
13300444 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13300470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13300496 C
1 C
13300497 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13300690 original size:12 final size:12
Alignment explanation
Indices: 13300673--13300698 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
13300663 CCCGTCGAAA
13300673 CGAGCGGGCGGG
1 CGAGCGGGCGGG
13300685 CGAGCGGGCGGG
1 CGAGCGGGCGGG
13300697 CG
1 CG
13300699 GGCACTACGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.27, G:0.65, T:0.00
Consensus pattern (12 bp):
CGAGCGGGCGGG
Found at i:13301381 original size:26 final size:26
Alignment explanation
Indices: 13301352--13301404 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13301342 CTGGTCCGAT
*
13301352 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13301378 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13301404 C
1 C
13301405 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13302089 original size:26 final size:26
Alignment explanation
Indices: 13302060--13302110 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
13302050 CCAGTCCGAT
13302060 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
13302086 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
13302111 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:13303512 original size:894 final size:893
Alignment explanation
Indices: 13301477--13310904 Score: 9016
Period size: 898 Copynumber: 10.5 Consensus size: 893
13301467 ATGCGCAAGC
*** * *
13301477 CACATCTTCATATTTCTATGTGCCAATGCAATTTTTATGGCTTATAAATTCATACAATGGTCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
13301542 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* **
13301607 TTTTACGGTTCGGGATTTTTTAAAATTTTTT-TGAAAAATGTTTTGGCCCCAAACTTGGTAGACG
131 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA-GTTTTGGCCCCAAACTTGGTAGACG
**
13301671 TGATCCTTGTATTTTTGTTGGCATGCACAAAACTATTCAGCTAAAAACTCGAAGTGTACAAGATT
195 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
13301736 TTGTGACCATTTGAAAAATGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGT
260 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
13301801 AAAATCTCAAATGCACTTTAGGGGGGTGTGTGTTCTCGAGGTTTGAAGAGGGATAGGGGGCCAAT
325 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
13301866 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCTATCGT
390 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * * *
13301931 TGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGCCGATGGTGCCCCGACGAAGAA
455 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAA
* * *
13301996 AAATGCGGCCCCAAG-ACATG-CTCGAGCCCAGCATTTGCTG-CTGTAACCCTCGGTCCAGTCCG
520 AAATGCGGCACC-AGCACATGCCT-GAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCAGTCCG
* *
13302058 ATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
582 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* ** * * * * *
13302123 CCACGAAACAAGCGTGCGGGTACTCAGTCGGGCAGAGGGGCGGGATGGGCAAGCCGGGGATCGGT
647 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGC
* * * * * * * * *
13302188 CGGGTCCCCCTCTACGTGTTTCTGATCCTACTACTGAAACCCTCAGTCTGGTCTAATCTTAGACT
712 CGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTC-GATCTTAGACT
* *
13302253 GGGAATGAACTCCGTTTGCCTAAACCAACCGACGAAACGAGTAGACGGGCGAGCGGGCGGGCACT
776 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC----AG-C--G-G-GCGGGCGGGCACT
* *
13302318 AC-CCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGG
832 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
13302379 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
13302444 TAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* *
13302509 TTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGT
131 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* **
13302574 GATCCTTGTATTTTTTTTGATATGCACAAAAAAATTTC-GCTAAAAACTCGAAGTGTACAAGATT
196 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATT
*
13302638 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGT
260 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
13302703 AAAATCTGAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
325 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
13302768 ATAGGGGCCAAGTACAAGCACCCATTGCACATCATGTGCGCACACTACCCCGGCCCCCCCGATCG
390 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCCGATCG
* * *
13302833 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTACCCCGACGAAGA
454 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGA
* * ** ** * *
13302898 AAAATGCAGCACCAACACATGCCTGAGAACAGCATGTGCTGTCGCAACCCTCAATCCGGTCTGAT
519 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGAT
*
13302963 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA-TTTGTATGCCTAAGTCAACCC
584 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
* * * * * * ***
13303027 ATGAAACAAGCGTGCGGGTGCTCAACCGGCCAGAAGGGCGAGATGCGCAAGTCGGGGATCAATCG
649 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCG
* * *
13303092 GGTCCCCCTCT-CTGTGCTACCGATCCTACTACCGCAACCCTCGGTCTGGTCGATCTTAGGCTGG
714 GGTCCCCCTCTGC-GTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTCGATCTTAGACTGG
* * **
13303156 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAATTAGCGGGCGGGCGGGCACTATACCGGCCA
778 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-CAGCGGGCGGGCGGGCACTACGCCGGCCA
* * ** *
13303221 GAAAGATGGGATGCGCAAGTTGTGGATCGATGGGGTGGTAGGTGGGTTTAGG
842 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
13303273 CACATCCTCATATTTCTCCCTGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
13303338 TAAGGCTTCACGTGAAGTTTGATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTGAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* ** * *
13303403 TTCTGTGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGT
131 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * * * *
13303468 GATCCATGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAATGTACAAGATTT
196 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
13303533 TGTGACCATTTGAATAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTA
261 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
13303598 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAGTA
326 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
13303663 TAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGTGCACACCCCCCCGACCCCCCCGATCGT
391 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGT
* * * * * * ** * * *
13303728 TGGAACTCCATTACCGTTGATCAGGTTCTCCGGTGATGATCCGGA-GATGGTGCCTCGACGAA-A
455 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GACGATGGTGCCCCGGCGAAGA
* *
13303791 AAAATGCAGCACCAACACATGCCCT-AGCCCAGCATGTGCTGTCGCAACCCTCGGT-C--T--GA
519 AAAATGCGGCACCAGCACATG-CCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGA
** *
13303850 TC-----C-------G-A-T-C-T-TG----GACTGGGAATGAACTCTACATTCCTAAGTCAACC
583 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * * * * *
13303894 CACGAAACGAGTGTGCGTGTGCTCAGCCGGCTACAGGGGCGGGATGCGCAAGTCGGGGATCGACC
648 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCC
* ** * * * * *
13303959 GGGTCCTCCTCCACGTGTTGTCGATCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTG
713 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGT-CGATCTTAGACTG
* * *
13304024 GGAATGAACTCCATATGCCTAAGCCGACCGACGAAACGAGTGGGCGGGCAAGCGGGCTGGCACTA
777 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A----GC-GG---GCGGGCGGGCACTA
* *
13304089 CGCTGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
833 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
13304150 CACATCTTCATATTTCTGCGTCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
** * * *
13304215 TAAGCCTTCAAATGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * *
13304280 TTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGT
131 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
13304345 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATACAGCTAAAAACTCGAAGTGTACAAGATTT
196 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *** * *
13304410 TGTGACCATATGAAAAAAGTGTCCCCAAATGCCATTTTTATATCTTGTAAAT-TCATACAATGGT
261 TGTGACCATTTGAAAAAAGTGTCCCC--AT----TTCAGACA-CTT-T-AATGGC-TAC--TGG-
* * ** * * **** * *
13304474 C-CCTTAAGCCTTCACGTGAAGTTCCATGGCAACACGACTCCTTTTCTA-TTTTTCATGA-TTTT
313 CAGC--AAACC-T---GT-AAAAT-C-T--CAA-ATG-CT-C-TTT-AAGGGGGT-GTGAGTTCT
* ** * * * ***** * * * *******
13304536 TGAAACTTT--TTACGGTTCAGGATTTTTAAAAAAAATTTTGG--AAGT---AGTTTTGGCCGCA
361 CG-AGGTTTGATGAGGGAT-AGG--GGGCCAATATAA---GGGCCAAGTACCAGCACCCATCGCA
* * * ** * ******* * * * * ***** * *
13304594 -AAC-T-TG-GTAGA---CGTGATCCTTGTTTTTTTGTTGGCATACACAAAAAAATTCAG-CTAA
419 CATCATGTGCGCACACCCCCCG-GCC-CCCCCGATCGTCGG-A-ACCCCAATGCCGTCGGTC-AG
*** * * * * * **** * * *
13304651 AAACT-CGAAG-TG-TAC-AAGATTTTGTGACCATTTGAA-AAAAGTGTC-CCGATTTCAGACAC
479 GTTCTCCGACGATGCTCCGACGA--TGGTGCCCCGGCGAAGAAAAATG-CGGC-A--CCAG-CAC
*** * * * * *** *** * ** *
13304710 ATTAATG-G-CTA-C-TG-GCAG-C-AAACCTATAAAATCTCA-AAGGCTCTT-GAAGGGGACGT
537 ATGCCTGAGCCCAGCATGTGCTGTCGCAACC-CT-CGGTC-CAGTCCGATCTTAGACTGGGA-AT
** * * * ** * * *
13304766 GAGTTCTCG-A-GGTTTGA-TGAGGGATAGGGGGC-CAATATAAGGGCC-AAGAACCAGCACCCT
598 GAACTC-CGTATGCTTAGACT--GGGA-A-TGAACTC--TGT-A-TGCCTAAG--TCA--ACCC-
* * * * ** *** * * ** * **** ** * **
13304826 TCCCACATCATGTGCGCACACCCCCTCCGGCCCCCCCGATCATC-GGAACCCCAA-T-GCCG-TC
649 -ACGA-A--ACGAGCGTGCGGGCGCT-CAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC
* * * * * * * ** * * * * *** ** *
13304887 GGTCAGGT--TCTTCGGTGATGCTAGGCGATGGTGCCCCAACGAAGAAAAATACAGCACCAG-CA
709 GGCCGGGTCCCCCTCTGCG-TGCT-GCCGATCCT--ACTACCG--CAACCCT-C-GGTCCGGTC-
* * *** * ** * ** * ** * * * * **
13304949 CATGC-TCGAGCCCAGCATGTGCTGCCGCAACCCTCAATCCGGTCCCATCTTAGACTG-GGAATG
765 GAT-CTTAGA-CTGGGAATGAACT-CCGTATGCCT-AAGCC-AACCGA-C-GAAACAGCGG-GCG
** ** * * ** ** *** * * *
13305012 AACTCCGTATGCTTA-GACTGGGAATGA-ACTCTATATGCCTAAGTCAACCCATGAAAT-GAGTG
822 GGC-GGGCA--C-TACG-CCGGCCA-GAGAGACGGGATG-C---G-CAAGCCGTG-GATCGA---
* * ** ****
13305074 TGCGGGTGCTCAGCCGGCCAGAGGGG
872 T-AGGGTGGT-AGGTGGGTTTA--GG
* * * * ** * *
13305100 CGAGATGCGTAAGCCGGGGATCA-GTCGAGTTTAGGCACAT-CATCATATTTCTGCATGCCGATG
1 C-ACAT-C-T---TC----AT-ATTTC-TGCAT-GCCA-ATGC--CATT-TT-T--AT---G--G
* * *
13305163 CCATTTTTATGGCATATAAATTCATACAATGGTCCCTTGAGCCCTCACGTGAAGTTTCCTGGCAA
41 -C-----T-T-G----TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
13305228 GACGACTCATTTTCTATTTTTCAC--------AAA----TT----TT---G--------AAA-CT
94 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * *
13305265 TTT----AGCAGTTTTGGCCGCAAACTTGGTAGGCGTGATCCTTGTTTTTTTGTTGGCATGCACA
159 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
13305326 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
224 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
13305391 TTCAGGCACTTTAATGGCTATTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
289 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
13305456 GAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
354 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
13305521 CATCATGTGCGCACACCCCCCGGCCCGCCCGATCATCGGAACCCTAATGCCGTCGGTTAGGTTCC
419 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * *
13305586 CCGGCGATGCTCCGGCGATGGTGCCCCGGTGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCC
484 CCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
* * ** * *
13305651 AGCATGTGCTGTCGCCACACTCGGTCCAGTTTGATCTTAGATTGGGAATGAACTTCGTATGCTTA
549 AGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
13305716 GACTGGTAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTACGAGCGCTCAGCC-GC
614 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * ** * * * ** * *
13305780 CAGAGGGGCGAGATGCCCCGGTCGAGGATCGACCGAGTCCCCCTCTGCAAGCTGCCGATCTTGCT
679 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACT
** * * * *
13305845 -GTGCAACCCTCGGTCTGATCCAATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
744 ACCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
13305909 AGAAACGAGCAGGCGGGCGGGCAGGCGGGCGGGCACTACGCCGACCAAAGAGACGGGATACGCAA
808 CG-AA--A-CA-----GC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
13305974 GTCGTGGATCGATAGGGTGGTAGGTGGGCTTAGG
860 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
13306008 CACATCTTCATATTTTTGCATGCCAGTGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
13306073 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
*
13306138 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
131 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
13306203 GATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
196 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * * * *
13306268 TGTCA-AATTTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTAG-AGGAAACCTAT
261 TGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
13306331 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAAT
325 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * * *
13306396 ATAAGGGCTAAGTACCAGCACCCATCACACATCATGTGGGCGCACCCCCCATGGCCTCCACGATC
390 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC--GGCCCCCCCGATC
* * * * *
13306461 GTTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC-AGCGATGGTGCCTCGGCAAA
453 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGGCGAA
** * * * * * * * *
13306525 GAAAAATGCGATACCAGCATATGCCCGAGCCAAGCATGTGCTATCGTAACCCTCGGACCGGTCCA
517 GAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCG
* *
13306590 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTTAA
582 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAA
* * * * *
13306654 CCCACGAAATGAGCATGCGAGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAG-CTGGGGATCA
646 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCG
* * * * *
13306718 GCCGGGTCCCCTTCTGCGTGCT---GATCCTACTGCTGCAACCCTCGATCTGGTCTGATCTTAGA
710 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTC-GATCTTAGA
* * *
13306780 CTGGGAAATGAACCCCGTATGCCCAAGCCAACCGACGAAACGAGC-GGC---CGGGCACTACGTC
774 CTGGG-AATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AGCGGGCGGGCGGGCACTACGCC
* *
13306841 GGCTAGAGAGAC-GGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
837 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
13306897 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
13306962 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * *
13307027 TTTTGCGGTTCGGAATTTTTTAAAATTTTTTCAGAAGGCGTTTTGGCCCCAAACTTGGTAGATGT
131 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
13307092 GATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
196 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
13307157 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAAGCTGTA
261 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
13307222 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
326 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
13307287 TAAGGGCCAAGTACCAGCACCCATCGTACATCTTGTACGCACACCCCCCGGCCCCCCCGATC-TC
391 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT-
** * * * *
13307351 CGGAACCCCAATGCCACCGGTCAGGTTCTCTGACGATGGTCCGGCGATGGTGCCCCGGTGAAGAA
455 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAA
* *
13307416 AAATGCGGCACCAGCACATG-CTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGAT
520 AAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGAT
* *
13307480 CTTAGACTGGGAATGAACTCCGTATGTTTAGACTGTGAATGAACTCTGTATGCCTAAGTCAACCC
584 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
* * ** * * *
13307545 ACGAGACGAGCGTGCGGGTGCTTTGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCG
649 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCG
* ** * * ** * **
13307610 GGTCCCCCTCTGTGTTTTGCCAATCCTACTACCGTAACCCTCAATCCGTTCTGATAATAGACTGG
714 GGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTC-GATCTTAGACTGG
* *
13307675 GAATTAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCAGGCGGGCGGGCGGGCACT-CTG-C
778 GAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CA-GCGGGCGGGCGGGCACTAC-GCC
* * *
13307738 GGCCAGAGAGACGAGATGCACTAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
837 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
13307795 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTAAGGCTTGTAAATTCTTACTATGGTCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * * * *
13307860 TAAGCCTTCACGTGAGGTTTCATGCCAAGACAACTCTTTTTTTATTTTTCATGATTTTGGAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
** *
13307925 TTTTACGGTTCAAGATTTTTTAAAATTTTTT-TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
131 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
13307989 TGATCCTTGTGTTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTGCAAGATT
195 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
13308054 TTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
260 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * * *
13308119 AAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGGGGGATGGGGGGCCAAT
325 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
13308184 ATAAGGGCCAAGAACCAGCACCCATCACACATCATGCT-CGCACACCTCGCCCAGCCCCCCCGAT
390 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATG-TGCGCACACC-C-CCCGGCCCCCCCGAT
* * ** * ** *
13308248 CGTCGGAACCCTAATGCCGTCGGTTAGGTTCTCCGACGATGCTTAGGCGATGGTGCGACGGCAAA
452 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAA
* * * * *
13308313 GAAAAATGCGGCACCAGCATAT-CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCG
517 GAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCG
*
13308377 ATCTTAGACTAGGAATGAACT-C-----C---G--T----ATG--C-C---A-----AAGTCAAC
582 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* * * * * * *
13308416 CGACGAAACGAGCGTGCGAGCGCTCAACCGACTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
647 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGC
* * * * * ** * * *
13308481 CGGGTCCCCCTCTACGTGCTGCTGATCCTGCTTCTGCAACCCTCTATCTGGTCCAATCTTAGATT
712 CGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGT-CGATCTTAGACT
* ** *
13308546 GGGAATGAACTCCGTATGCTTGTGCCAACCGACAAAACAAGCGGGCGGGTGGGCGGGCACTACGC
776 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AGCGGGC----GGGCGGGCACTACGC
*
13308611 CGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
836 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * **
13308669 CACATCTTCATTTTTCTACATGCCAATGCCATATTTATAACTTGTAAATTCATACAATGGTCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
13308734 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
** * ** * * *
13308799 TTTT---GTTCAAGATTTTTTTAAATTTTTTTGGAAGGATTTTTGGCCCCAATCCTGGTAGACGT
131 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
13308861 GATCCTTTTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTT
196 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * * *
13308926 TGAGAGCATTTGAAAAAAGTGTTCCTATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTA
261 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
13308991 AAATCTGAAATGCTCTTTAAGGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGGGGGCCAA
326 AAATCTCAAATGCTCTTTAA--GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
13309056 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCGTCCGACCCCCCCGAT
389 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC--CCGGCCCCCCCGAT
* ** * * * * * *
13309121 C-ACTGGAACTTCAATACCGTCAGTCAGGTTCTCCGGCGATACTTCGACGATGGTGGCCCGGCGA
452 CGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGA
* * * * *
13309185 AGAAAAATACGGTATCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACACTCGGTCCAGTCC
516 AGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCC
* * *
13309250 AATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
581 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* ** * * ** *
13309315 CCCACGAAACGAGCATAAGGGCGCTCAGCCGACCAGAGGGGTGGGATATGCAAGCCGGGGATCGG
646 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGG
* * * *
13309380 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTTCGATCTTAGAC
711 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGG-TCGATCTTAGAC
* * * * * *
13309445 TGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACA---AGCAGGCGGGCACTATGCTGGC
775 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGCGGGCGGGCGGGCACTACGCCGGC
* * *
13309507 TAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
840 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
13309561 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCA
1 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * **
13309626 TAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATGATTTTCCAAACT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * *
13309691 ATTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACA
131 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
13309755 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
195 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
13309820 TTGTGACCATTTG-AAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGT
260 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
13309884 AAAATTTCAAATGCTCTTTAAGGGGGTGTGAGCTCTAGAGGTTTGGTGAGGGATAGGGGGCCAAT
325 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
13309949 ATAAGGGCCACGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGG-CCCCTCGATCG
390 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCG
* * * ** *
13310013 ACAGAACCCCAAAGCCACCGGTCAGGTTCTCCGACGATGGC-CCGGCGATGGTGCCCCGGCGAAG
454 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT-GCTCCGACGATGGTGCCCCGGCGAAG
* * *
13310077 AAAAATGCTGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCCAGTCCGA
518 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGA
* * *
13310142 TCTTAGATTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
583 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * * *
13310207 AACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAA-TCCGGGGATCGAC
648 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGT-CGGGGATCGGC
* * * **
13310271 CGGGT-CCCCTTTGCGTGCTGCCGATCCTACTACCTCAACCCTCGGCCCAATCTGATCTTAGACT
712 CGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTC-GATCTTAGACT
* * * *
13310335 GGGAATGAACTCTGTATGACTAAGCCAACCGACGAAACGAGCGAACGGGTGGGCGGGCACTACGT
776 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A--G--CGGGCGGGCGGGCACTACGC
**
13310400 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTTGTTTAGG
836 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
13310458 CACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
1 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * *
13310523 TAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCGAATCT
66 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * * *
13310588 TTTTGCGGTTTGGGATTTTTTCAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGT
131 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
13310653 GATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
196 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
13310718 TGTAACCATTTGAAAAAAGTGTCCCCCTTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTA
261 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
13310783 AAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATCGGGGGCCAATA
326 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
13310848 TAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGACACCCCCCCCGGCCCCC
391 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-CACACCCCCCGGCCCCC
13310905 TTAAGCCGGG
Statistics
Matches: 6976, Mismatches: 1154, Indels: 795
0.78 0.13 0.09
Matches are distributed among these distances:
867 13 0.00
868 110 0.02
869 54 0.01
870 2 0.00
871 189 0.03
872 7 0.00
873 383 0.05
874 233 0.03
875 2 0.00
876 1 0.00
877 323 0.05
878 2 0.00
879 3 0.00
880 1 0.00
881 4 0.00
882 1 0.00
883 6 0.00
884 7 0.00
885 6 0.00
886 6 0.00
887 3 0.00
888 252 0.04
889 422 0.06
890 405 0.06
891 44 0.01
892 277 0.04
893 72 0.01
894 603 0.09
895 137 0.02
896 15 0.00
897 361 0.05
898 608 0.09
899 89 0.01
900 245 0.04
901 61 0.01
902 518 0.07
903 192 0.03
904 137 0.02
905 168 0.02
906 228 0.03
907 45 0.01
908 5 0.00
910 6 0.00
911 6 0.00
912 2 0.00
913 4 0.00
914 7 0.00
915 17 0.00
916 11 0.00
917 8 0.00
918 4 0.00
919 7 0.00
920 21 0.00
921 15 0.00
922 8 0.00
923 18 0.00
924 12 0.00
925 12 0.00
926 16 0.00
927 19 0.00
928 12 0.00
929 12 0.00
930 31 0.00
931 17 0.00
932 36 0.01
933 23 0.00
934 30 0.00
935 32 0.00
936 18 0.00
937 8 0.00
938 24 0.00
939 10 0.00
940 8 0.00
941 5 0.00
942 5 0.00
943 12 0.00
944 7 0.00
945 2 0.00
946 4 0.00
947 9 0.00
948 5 0.00
950 3 0.00
951 5 0.00
952 1 0.00
953 115 0.02
956 1 0.00
957 4 0.00
958 3 0.00
960 4 0.00
961 3 0.00
962 3 0.00
963 2 0.00
964 3 0.00
965 2 0.00
966 2 0.00
968 2 0.00
969 2 0.00
971 1 0.00
973 3 0.00
974 1 0.00
977 3 0.00
979 1 0.00
980 1 0.00
981 1 0.00
985 67 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAA
AATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGG
TCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACAGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
Found at i:13305048 original size:26 final size:26
Alignment explanation
Indices: 13304997--13305049 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13304987 CCGGTCCCAT
*
13304997 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13305023 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
13305049 C
1 C
13305050 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13305726 original size:26 final size:26
Alignment explanation
Indices: 13305686--13305738 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13305676 CCAGTTTGAT
*
13305686 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
13305712 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13305738 C
1 C
13305739 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13305934 original size:12 final size:12
Alignment explanation
Indices: 13305917--13305943 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
13305907 GAAGAAACGA
13305917 GCAGGCGGGCGG
1 GCAGGCGGGCGG
13305929 GCAGGCGGGCGG
1 GCAGGCGGGCGG
13305941 GCA
1 GCA
13305944 CTACGCCGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.11, C:0.26, G:0.63, T:0.00
Consensus pattern (12 bp):
GCAGGCGGGCGG
Found at i:13306628 original size:26 final size:26
Alignment explanation
Indices: 13306592--13306644 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13306582 CCGGTCCAAT
13306592 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
13306618 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13306644 C
1 C
13306645 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:13307519 original size:26 final size:26
Alignment explanation
Indices: 13307481--13307531 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13307471 CAGTCTGATC
13307481 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
* *
13307507 TTAGACTGTGAATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCCGTATG
13307532 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:13309289 original size:26 final size:26
Alignment explanation
Indices: 13309253--13309305 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13309243 CCAGTCCAAT
*
13309253 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13309279 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13309305 C
1 C
13309306 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13310172 original size:26 final size:26
Alignment explanation
Indices: 13310143--13310195 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13310133 CCAGTCCGAT
*
13310143 CTTAGATTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
13310169 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
13310195 C
1 C
13310196 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:13311738 original size:26 final size:26
Alignment explanation
Indices: 13311687--13311739 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13311677 CCAGTCCGAT
* **
13311687 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13311713 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13311739 C
1 C
13311740 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13312853 original size:26 final size:26
Alignment explanation
Indices: 13312814--13312873 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
13312804 GTTGACTTAG
* * * *
13312814 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGACTTCATTCCCAATCTAA
13312840 GCATACGGACTTCATTCCCAATCTAA
1 GCATACGGACTTCATTCCCAATCTAA
13312866 G-AT-CGGAC
1 GCATACGGAC
13312874 CAGACCGAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 5 0.17
25 2 0.07
26 23 0.77
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAATCTAA
Found at i:13313344 original size:26 final size:26
Alignment explanation
Indices: 13313288--13313345 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
13313278 AATCCTTCCG
* * ***
13313288 AAAAAATTTTAAAAAATCTTGAAGTG
1 AAAAAAGTTTAAAAAATCATGAAAAA
*
13313314 CAAAAAGTTTAAAAAATCATGAAAAA
1 AAAAAAGTTTAAAAAATCATGAAAAA
13313340 AAAAAA
1 AAAAAA
13313346 ACGAGTCATC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.64, C:0.05, G:0.09, T:0.22
Consensus pattern (26 bp):
AAAAAAGTTTAAAAAATCATGAAAAA
Found at i:13314630 original size:26 final size:27
Alignment explanation
Indices: 13314579--13314632 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
13314569 GTTGACTTAG
*
13314579 GCATACGGAGTTCATTTCCTAGTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
13314606 GCATACGGAGTTCA-TTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
13314632 G
1 G
13314633 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (27 bp):
GCATACGGAGTTCATTTCCCAGTCTAA
Found at i:13315512 original size:26 final size:26
Alignment explanation
Indices: 13315482--13315534 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13315472 GTTGGCTTAG
13315482 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGGAGTTCATTCTC-AGTCTAA
13315508 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
13315534 G
1 G
13315535 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:13317235 original size:26 final size:26
Alignment explanation
Indices: 13317205--13317257 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13317195 GTTGACTTAG
13317205 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
13317231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13317257 G
1 G
13317258 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13319017 original size:26 final size:26
Alignment explanation
Indices: 13318981--13319033 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13318971 GTTGACTTAG
13318981 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
13319007 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13319033 G
1 G
13319034 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13320472 original size:901 final size:899
Alignment explanation
Indices: 13318107--13320905 Score: 4005
Period size: 901 Copynumber: 3.1 Consensus size: 899
13318097 TTGGGGATAC
* * * * *
13318107 GGAGTTCATTCCTAGTCTTAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGG
1 GGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATACTGGGCTCGGG
* * *
13318172 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGCCAGAGAACCTTA
66 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
* * *
13318237 CCGGCGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGG
131 CCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
13318302 TGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
13318367 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
13318432 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGAATGC
325 C-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
13318497 CAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
389 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAAATCCTTCCGAAAAAATTTTAA
*
13318562 AAAATCTCGAACCGT-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
454 AAAATCACGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
13318626 AACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCGT
519 AACTTCACGTGAAGGCTTAAGGGACCATTGT-TGAATTTAAAAGCCATAAAAATGGCATTGGCAT
* *
13318691 GCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCG
583 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
13318756 GCTCTCTAGCCGGCGTAGTGCCTGCCTGCCTGCCTGCCTGCCCGCTCGTTTCGTTAGTTGGCTTA
648 TCTCTCTGGCCGACGTAGTG-CT--CTGCCTGCCAGCCTGCCCGCTCGTTTCGTCAGTTGGCTTA
* * * * * *
13318821 GGCATACGGAGTTCATTCCCAGTTTAAGATTAGAACAGA-TCAAGGGTTGTGGCAGCATGATCGG
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGG
* * * * * *
13318885 TAGCACGCAGAGGGGGACCCGACCGATCCCCGGATTGTACATCCTGCCCCTCTGGCCGACTGAGC
774 CAGCACGCAGAGGGGGACCCGACCGAT-CCCAGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGC
* *
13318950 GCCGGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
838 GCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
13319012 TGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAGCACATTCTGGGCTCGA
1 -GGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATACTGGGCTCGG
* ** ** * *
13319077 GCATGTGCTGGTACCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
65 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
*
13319142 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGCTGTGCGCACATGATGTGCGATGG
130 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGG
* *
13319207 GTTCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCC
* *
13319272 CTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
13319337 CACCTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCAT
323 CA-CTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
13319402 GCCAACAAAGATACAAGGATCACGTCTACCAAGTTT-AGGGCCAAAAATCCTTCCGAAAAAATTT
387 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGA-GGCCAAAAATCCTTCCGAAAAAATTT
** * *
13319466 TAAAAAATCACGAAATGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCA
451 TAAAAAATCACGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
13319531 CGAAACTTCACGTGAAGGGTTAAGGGACCATTGTTGAATTTAAAAGCCATAAAAATAGCATTGGC
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTGAATTTAAAAGCCATAAAAATGGCATTGGC
* *
13319596 ACGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
581 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** * * * *
13319661 CGTCTCTCTGGCCGACGTAATGCTC-GCCCACCCGCCAGCTCGCTCGTTTCCTCAGTTGGCTTAG
646 CGTCTCTCTGGCCGACGTAGTGCTCTGCCTGCCAGCCTGCCCGCTCGTTTCGTCAGTTGGCTTAG
* * * * ** *
13319725 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTGCAACAACAGGATCGGCA
711 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
13319790 GCACACAGAGGGGGACCTGGCCGATCCCAGCTTGCACATCCCGCCCATCTGGCCGGCTGACCACC
776 GCACGCAGAGGGGGACCCGACCGATCCCAGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *** *
13319855 CGCACGCTCGTTTCATCTATTGACTTAGGCGTAC-GAGTTCATTCCCAGTCTAAGCATA
841 CGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * *
13319913 GGGAGTTCATT-TTCAGTCTAAGATTGGATCGGATCGAGGGTTGCAGCAGCACATACTGGTCTCG
1 -GGAGTTCATTCCT-AGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATACTGGGCTCG
* *
13319977 GGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
64 GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* * * * *
13320042 GACCGATGGCATTGGGGTTTCGACAATCGATGGGGCCGGGGGGTGTGCGCAAATGATGTGCGATG
129 GACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
13320107 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
13320172 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
13320237 CACTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATG
323 CACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
13320302 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGACCAAAAATCCTTCC-AAATAAATTTT
388 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAAATCCTTCCGAAA-AAATTTT
* ** * *
13320366 AAAAAATCCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
452 AAAAAATCAC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
13320431 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-TGAATTTAAAAGCCATAAAAATGGCATTGG
13320496 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
580 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
13320561 CCGTTTCTCTGGCCGACGTAGTGC-CTGCCTGCCAGCCTGCCCTCTTGTTTCGTCAGTTGGCATA
645 CCGTCTCTCTGGCCGACGTAGTGCTCTGCCTGCCAGCCTGCCCGCTCGTTTCGTCAGTTGGCTTA
* * * * * *
13320625 GGCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTACGGCAGTAGGATCGAC
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGC
* ** ** * * * * * *
13320690 AACACGCAGAAAGGGACCCGACTAATCCCCGACTTGCGCATCCCACCCCTCTGCCCGGTTGAGTG
775 AGCACGCAGAGGGGGACCCGACCGATCCCAG-CTTGCACATCCCGCCCCTCTGGCCGGCTGAGCG
13320755 CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
839 CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * *
13320816 CGAGTTCATT-CTCAGTCTGAGATCGGACTGGACCGAGGGTTGCGGTAGCACATACTGGGCTCGG
1 GGAGTTCATTCCT-AGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATACTGGGCTCGG
** *
13320880 GCACATGCTGGTGCCGCATTTTTCTT
65 GCATGTGCTGGTGCCACATTTTTCTT
13320906 TGCCGGGGGG
Statistics
Matches: 1671, Mismatches: 207, Indels: 34
0.87 0.11 0.02
Matches are distributed among these distances:
898 3 0.00
899 123 0.07
900 149 0.09
901 455 0.27
902 203 0.12
903 127 0.08
904 2 0.00
905 13 0.01
906 215 0.13
907 303 0.18
908 78 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATACTGGGCTCGGG
CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
AATCACGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTTGAATTTAAAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTGCTCTGCCTGCCAGCCTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACG
CAGAGGGGGACCCGACCGATCCCAGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
Found at i:13320823 original size:25 final size:26
Alignment explanation
Indices: 13320785--13320833 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
13320775 GTTGACTTAG
13320785 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13320811 GCATAC-GAGTTCATTCTCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
13320834 GAGATCGGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13323321 original size:25 final size:26
Alignment explanation
Indices: 13323272--13323322 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13323262 GTTGACTTAG
13323272 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13323298 GCATACGGTGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13323323 TATTGGATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13324223 original size:25 final size:26
Alignment explanation
Indices: 13324174--13324224 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13324164 GTTGACTTAG
13324174 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13324200 GCATACGGTGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13324225 TATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13324586 original size:901 final size:885
Alignment explanation
Indices: 13322422--13324599 Score: 3236
Period size: 889 Copynumber: 2.4 Consensus size: 885
13322412 GACTTAGGTG
* * * * *
13322422 TACGGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGCGTTGCGGTAGCACATGCTGGGCTC
1 TACGGTGTTCA-TCCCAGTCTAATATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * *
13322487 AGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGG-----TCAC--A--ATCGTCGGAGAACTTG
65 AGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGCGGAGCATCGTCGAAGAACCTG
* * * * * *
13322543 ACCGACAGCATTGGGGTTCCAGA-AATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
130 ACCGGCGGCATTGGGGTT-CTGACGATC--GGGGGCCGGGGAGTTTGCGCACATGATGTGCGATG
*
13322607 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
13322672 CTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
13322737 CACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
13322802 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAACCCTTCTGAAAAAATTTT
387 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAAACCCTTCCGAAAAAATTTT
* * * * *
13322867 AAAAAATCTTGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTTGTATTGCCAT
452 AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAAAAAACGAGTCGTATTGCCAT
*
13322932 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
13322997 ACGTAGAAATATGGAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCAAGGCTTGCACATCC
582 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCACATCC
13323062 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTC
647 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTC
* *
13323127 ATTCCCAGTATAAGATCAGACCGAATGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGAGGGGG
712 ATTCCCAATATAAGATCAGACCGAATGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGG
* *
13323192 ACCCGACCGACCCCCGGCTTGCACATCCCGCCCTTCTGGTCGATTGAGCACCTGCACGCTCGTTT
777 ACCCGACCGACCCCCGGCTTGCACATCCCACCCTTCTGGCCGATTGAGCACCTGCACGCTCGTTT
13323257 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
842 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
** ** * *
13323301 TACGGTGTTCATCCCAGTCTAATATTGGATTGGATCGAGGGTTACGGCAGCACATGCTGGGCTCA
1 TACGGTGTTCATCCCAGTCTAATATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * * *
13323366 GGCATGTGTTGGTGTCGCATTTTTCTTTGCCGGGGCACCATCGCTGGAGCATCG-CTAGAGAACC
66 GGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGC-GGAGCATCGTCGA-AGAACC
* ** * *
13323430 TGATCGGCGGCATTGGGGTT-TCGACGATCGAGGGGCCAGGGGA-TTGTGTACACAGGATGTGTG
128 TGACCGGCGGCATTGGGGTTCT-GACGATCG-GGGGCC-GGGGAGTT-TGCGCACATGATGTGCG
*
13323493 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
189 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
13323558 CCTCTTAAAGAGCATTTCAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
254 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
13323623 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGTATTTTTTTGTG
319 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
*
13323688 CATACCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCC-AAAACTCCTTCCGAAAAAA
384 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAAAC-CCTTCCGAAAAAA
* * *
13323752 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTG
448 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAAAAAACGAGTCGTATTG
*
13323817 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
513 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * **
13323882 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
578 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCAC
*
13323947 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTAGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
643 ATCCCGTCTCTCTGG-C--C---G-G--CG-TAG--TGCCCGCCCGCTCGTTTCGTCAGTTGGCT
*
13324012 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAATTGAGGGTTGTGGTAGCAGGATCG
696 TAGGCATACGGAGTTCATTCCCAATATAAGATCAGACCGAA-TGAGGGTTGTGGTAGCAGGATCG
* * ** * *
13324077 TCAGCACGCGGAGGGGGACCCGGTCGATCCTCGGCTTGCACATCCCACCCTTCTGGCCGATTGAG
760 ACAGCACGCAGAGGGGGACCCGACCGACCCCCGGCTTGCACATCCCACCCTTCTGGCCGATTGAG
*
13324142 CACCTGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
825 CACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
** * *
13324203 TACGGTGTTCATCCCAGTCTAATATCAGACCAAACCGAGGGTTGCGGCAGAACATGTTGGGCTC-
1 TACGGTGTTCATCCCAGTCTAATATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
*
13324267 GAGCTTGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGAAGAACC
66 G-GCATGTGTTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCG-CGGAGCATCGTCGAAGAACC
*
13324332 TGACCGGCGGCATTGTGGTTCTGACGATCAGGGGGCCGGGGAGTTTGCGCACATGATGTGCGATG
128 TGACCGGCGGCATTGGGGTTCTGACGATC-GGGGGCCGGGGAGTTTGCGCACATGATGTGCGATG
* *
13324397 AGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
13324462 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-CCAAGTAGCCATTAAAGTGTCTGAAATGGGG
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAAATGGGG
*
13324526 ACACATTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
321 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
13324591 TGCCAAAAA
386 TGCCAAAAA
13324600 TTCAAAAATC
Statistics
Matches: 1156, Mismatches: 104, Indels: 56
0.88 0.08 0.04
Matches are distributed among these distances:
878 72 0.06
879 13 0.01
884 3 0.00
887 2 0.00
888 15 0.01
889 478 0.41
890 1 0.00
892 1 0.00
895 1 0.00
896 1 0.00
898 2 0.00
899 3 0.00
900 2 0.00
901 280 0.24
902 277 0.24
903 5 0.00
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (885 bp):
TACGGTGTTCATCCCAGTCTAATATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
GGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGCGGAGCATCGTCGAAGAACCTGA
CCGGCGGCATTGGGGTTCTGACGATCGGGGGCCGGGGAGTTTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAAACCCTTCCGAAAAAATTTTAAAA
AATCCTGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAAAAAACGAGTCGTATTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCACATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
CCAATATAAGATCAGACCGAATGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGACCC
GACCGACCCCCGGCTTGCACATCCCACCCTTCTGGCCGATTGAGCACCTGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
Found at i:13325387 original size:806 final size:808
Alignment explanation
Indices: 13323780--13325402 Score: 2356
Period size: 806 Copynumber: 2.0 Consensus size: 808
13323770 CGTAAAAAGT
* * *
13323780 TTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGG
1 TTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGG
*
13323845 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
66 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
* ** *
13323910 AAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCC
131 AAACCAACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGCCCGACGTAGT---
*
13323975 CGCTAGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTA
193 CGC-A-CCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTA
** * ***
13324040 AGATCAGACCGAATTGAGGGTTGTGGTAGCAGGATCGTCAGCACGCGGAGGGGGACCCGGTCGAT
256 AGATCAGACCGAATTGAGGGTTACGGTAGCAGGATCGTCAGCACGCAGAGGGGGACCCAACCGAT
* * * *
13324105 CCTCGGCTTGCACATCCCACCCTTCTGGCCGATTGAGCACCTGCACGTTCGTTTCGTGGGTTGAC
321 CCTCGGCTTACACATCCCACCCCTCTGGCCGAGTGAGCACCTGCACGTTCGTTTCATGGGTTGAC
* * *
13324170 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGTGTTCATCCCAGTCTAATATCAGACCA
386 -T--G-A-A--GAGTTCATTCCCAATCTAAGCATACGGAGTTCATCCCAGTCTAAGATCAGACCA
* * * * * *
13324235 AACCGAGGGTTGCGGCAGAACATGTTGGGCTCGAGCTTGTGTTGGTGCCGCATTTTTCTTCGTCG
444 AACCCAGGGTTACGGCAGAACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTCTCTTCATCG
* * * *
13324300 AGGCACCATCGTCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGTGGTTCTGACGATCAGGG
509 AGGCACCATCATCGAAGCATCGTCGAAGAACCTAACCGGCGGCATTGTGGTTCCGACGATCAGGG
* *
13324365 GGCCGGGGAGTTTGCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
574 GGCCGGGGAGTGTGCACACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
13324430 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
639 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCT
13324495 CCAAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACA
704 CCAAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACA
13324560 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
769 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* *
13324600 TTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGG
1 TTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGG
* *
13324665 GACCATTGTATGAATTTACAAGCCATAAAAATGTCATTTGCATGCAAAAATATGAAGATGTGCCT
66 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
*
13324730 AAACCAACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGCCCGACGTAGT-GC
131 AAACCAACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGCCCGACGTAGTCGC
* * * *
13324794 -CC-GCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATT
196 ACCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC
*
13324857 AGACCGAATTGAGGGTTACGGTAGCAGGATCGAT-GGCACGCAGAGGGGGACCCAACCGATCC-C
261 AGACCGAATTGAGGGTTACGGTAGCAGGATCG-TCAGCACGCAGAGGGGGACCCAACCGATCCTC
* *
13324920 TGGCTTACGCATCCCGCCCCTCTGGCCG-GTGAGCATCC-GCACGTTCGTTTCATGGGTTGAC-G
325 -GGCTTACACATCCCACCCCTCTGGCCGAGTGAGCA-CCTGCACGTTCGTTTCATGGGTTGACTG
* ** *
13324982 -A-AGTTCATTCCCAATCTAAGTATACGGAGTTCATCCCCAGTCTAAGATCAGATTAGACCCAGG
388 AAGAGTTCATTCCCAATCTAAGCATACGGAGTTCAT-CCCAGTCTAAGATCAGACCAAACCCAGG
* * * *
13325045 GTTACGGCAGTACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTCTCTTCATCGGGGCACCA
452 GTTACGGCAGAACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTCTCTTCATCGAGGCACCA
* * *
13325110 TCATCGAAGCATCGTCGGAGAACCTAACTGGCGGCATTG-GCGTTCCGACGATCGGGGGGGCCGG
517 TCATCGAAGCATCGTCGAAGAACCTAACCGGCGGCATTGTG-GTTCCGACGATC-AGGGGGCC--
* *
13325174 TGGGGGGGTGTGCACACAT-ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
578 --GGGGAGTGTGCACACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
13325238 CTCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTAC
641 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCT-C
* *
13325303 C-AGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-
705 CAAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACAC
*
13325366 TTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAA
770 TTT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
13325403 CAAAAATACA
Statistics
Matches: 727, Mismatches: 64, Indels: 38
0.88 0.08 0.05
Matches are distributed among these distances:
801 31 0.04
802 124 0.17
803 7 0.01
804 1 0.00
805 3 0.00
806 197 0.27
807 17 0.02
811 29 0.04
812 134 0.18
813 3 0.00
816 2 0.00
820 179 0.25
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (808 bp):
TTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
AAACCAACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGCCCGACGTAGTCGC
ACCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC
AGACCGAATTGAGGGTTACGGTAGCAGGATCGTCAGCACGCAGAGGGGGACCCAACCGATCCTCG
GCTTACACATCCCACCCCTCTGGCCGAGTGAGCACCTGCACGTTCGTTTCATGGGTTGACTGAAG
AGTTCATTCCCAATCTAAGCATACGGAGTTCATCCCAGTCTAAGATCAGACCAAACCCAGGGTTA
CGGCAGAACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTCTCTTCATCGAGGCACCATCAT
CGAAGCATCGTCGAAGAACCTAACCGGCGGCATTGTGGTTCCGACGATCAGGGGGCCGGGGAGTG
TGCACACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTCCAAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAAAAA
Found at i:13325894 original size:26 final size:26
Alignment explanation
Indices: 13325855--13325907 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13325845 GTTGACTTAG
*
13325855 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAATTCATACCCAGTCTAA
*
13325881 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATACCCAGTCTAA
13325907 G
1 G
13325908 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATACCCAGTCTAA
Found at i:13326269 original size:859 final size:860
Alignment explanation
Indices: 13324604--13327320 Score: 3130
Period size: 859 Copynumber: 3.1 Consensus size: 860
13324594 CAAAAATTCA
* * *
13324604 AAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
13324669 ATTGTATGAATTTACAAGCCATAAAAATGTCATTTGCATGCAAAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
13324734 CAACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGCCCGACGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC-TT---C--C---GT---C-CC
* * * *
13324799 CGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATTAGACCGA
183 CGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CGG
** * * * * * * *
13324864 ATTGAGGGTTACGGTAGCAGGATCGATGGCACGCAGAGGGGGACCCAACCGATCCCTGGCTTACG
247 ACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCG
* * * * *
13324929 CATCCCGCCCCTCTGGCCGGTGAGCATCCGCACGTTCGTTTCATGG--G--TT--G---ACGAAG
312 CATCCCGCCCCTCTGGCCGGTGAGCACCCGCACGCTCATTTCGTGGTTGACTTAGGCATACGGAG
* * **
13324985 TTCATTCCCAATCTAAGTATACGGAGTTCATCCCCAGTCTAAGATCAGAT-TAGACCCAGGGTTA
377 TTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCTAGACAAAGGGTTA
* * * * *
13325049 CGGCAGTACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTCTCTTCATCGGGGCACCATCAT
442 CGGCAGCACATGCTGGGCTTGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCATCATC-T
* * *
13325114 CGAAGCATCGTCGGAGAACCTAACTGGCGGCATTGGCGTTCCGACGATCGGGGGGGCCGGTGGGG
506 CG-AGCATC-TCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATC---GGGG--GGTCGGG
* * *
13325179 GGGTGTGCACACATATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCA
564 GGGTTTGCGCACATATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
13325244 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTACCAGTAG
629 TCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAG----T--A-----G-T--C-GTAG
* * *
13325309 CCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGT
679 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
13325374 TTTTAGCTGAATTTTTTTGTGCATTCCAACAAAAATACAAGGATCATGTCTTCCAAGTTTGGGGT
744 TTTTAGCTGAATTTTTTTGTGCATTCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
*
13325439 GAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTG
809 CAAAACTCCTT-CGAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTG
* *
13325491 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
13325556 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
13325621 CCACCTACCATCCTATCGATCCACAGCTTGGGCCTCCCGTCTC-T-C-T-CCCGCCCGCTCGTTT
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTCCGTCCCCGCCCGCTCGTTT
* * * *
13325682 CGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCTGTCTAAGATTGGATCGGACCGAGGGTTGGG
196 CGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CGGACCGAGGGTTGCG
* * * * * * * *
13325747 GCAACAGGATTGGCAGCATGCAAAAGGGGACCCGGCCGATCCCCGGCTTGCGTATCCCGCCCCTC
260 GCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * *
13325812 TGGCCGGCTGAGCACCCGCACGCTCATTCCGTGGTTGACTTAGGCATACGGAGTTCATACCCAGT
325 TGGCCGG-TGAGCACCCGCACGCTCATTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
* * *
13325877 CTAAGCATACGGAATTCATTCCCAGTCTAAGATCAGATCGA-ACAAAGGGTTACGACAGCACATG
389 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCTAGACAAAGGGTTACGGCAGCACATG
* * *
13325941 CTGGGCTTGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCATCATCGTCGGAGCATCATC
454 CTGGGCTTGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCATCATC-TC-GAGCATC-TC
* *
13326006 GGAGAACCTAACCGGCGACATTGGGGTTCC-AGTGATCAGGGGGGTCGGGGGGTTTGCGCACATC
516 GGAGAACCTAACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGTCGGGGGGTTTGCGCACAT-
*
13326070 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAA
578 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
13326135 CTCACACCCTCTTAAAGAGCATTTGAG-A-T-GTAGCCATTAAAGTGTCTAAAATGGGGACACTT
643 CTCACACCCTCTTAAAGAGCATTTGAGTAGTCGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
*
13326197 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATTCCAA
708 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAA
* ** **
13326262 AAAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAA
773 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAA
*
13326327 ATCCCAAACCGTAAAAAGTTTTG
838 ATCCCGAACCGTAAAAAGTTTTG
*
13326350 AAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
***
13326415 ATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACATAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
13326480 CCACTTACCACCCTATCGATCCACGGCATGTGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG--TCTCT--TC--C---GT------C
* * * * ** *
13326545 CGTCCGCCCACCCGTTTGTTTCATCAATTGGCTTAGGTGTACGGAGTTCATTCCCAGTCTAAAAT
181 C--CCG----CCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
13326610 TGGACTGGACCAAGGGTTGCGGCAGCATGATCGGTAGCACGCAGAGGGGGACCCCGCCGATCCCC
240 TGGAC-GGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCCC
* *
13326675 GGCTTGC-CATCCCGCCCCTCTGGCCGGTTGAGCACCCCCACACTCATTTCGTGTGTTGACTTAG
304 GGCTTGCGCATCCCGCCCCTCTGGCCGG-TGAGCACCCGCACGCTCATTTCGTG-GTTGACTTAG
* * * *
13326739 GCATATGGAGTTCTTTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CTAGA
367 GCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCTAGA
** * * * *
13326803 CTGAGGGTTGCGGTAGCACATGCTGGG-TTCGGGCTTGTGTTGCTGCCGTATTTTTCTTCGTCGG
432 CAAAGGGTTACGGCAGCACATGCTGGGCTT-GGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGG
* * * *
13326867 GGCATCA--TC--G----TCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGC
496 GGCATCATCTCGAGCATCTCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTC
*
13326924 GGGGGGTGTT-CGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
561 GGGGGGT-TTGCGCACAT-ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
13326988 CCTCATCAAACCTTGAGAACTCACA-CCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
624 CCTCATCAAACCTCGAGAACTCACACCCT-CTTAAAGAGCATTTGAG----T--A-----G-T-C
* * * *
13327052 GAATAGGCATTAAAGTGTCTGAAATTAGGG-CAC-TTTTTCAAAATGGTCACAAAATCTTATACA
675 G--TAGCCATTAAAGTGTCT-AAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACA
* *
13327115 CTTCGAGTTTTAAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
736 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAACAAAAATACAAGGATCATGTCTACCAAG
* * * * **
13327180 TTT-AGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCTCGAACCGCAAAAGGTTTCA
801 TTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTG
* *
13327239 AAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
13327304 ATTGTAAGAATTTACAA
66 ATTGTATGAATTTACAA
13327321 ACTGGGCCGA
Statistics
Matches: 1586, Mismatches: 177, Indels: 132
0.84 0.09 0.07
Matches are distributed among these distances:
858 2 0.00
859 326 0.21
861 4 0.00
863 1 0.00
864 1 0.00
867 1 0.00
870 127 0.08
871 25 0.02
872 106 0.07
873 35 0.02
874 1 0.00
875 3 0.00
876 18 0.01
877 89 0.06
878 6 0.00
879 3 0.00
880 157 0.10
881 4 0.00
883 46 0.03
884 226 0.14
885 1 0.00
886 1 0.00
887 159 0.10
888 1 0.00
889 135 0.09
890 101 0.06
891 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (860 bp):
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTCCGTCCCCGCCCGCTCGTTT
CGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACGGACCGAGGGTTGCGG
CAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT
GGCCGGTGAGCACCCGCACGCTCATTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCTAGACAAAGGGTTACGGCAGCACATGCT
GGGCTTGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCATCATCTCGAGCATCTCGGAGA
ACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTTTGCGCACATATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CTCTTAAAGAGCATTTGAGTAGTCGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAACAAAAATA
CAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCCCGAA
CCGTAAAAAGTTTTG
Found at i:13326775 original size:26 final size:26
Alignment explanation
Indices: 13326739--13326791 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13326729 GTTGACTTAG
*
13326739 GCATATGGAGTTCTTTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
*
13326765 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
13326791 G
1 G
13326792 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:13326785 original size:884 final size:875
Alignment explanation
Indices: 13325688--13327320 Score: 2230
Period size: 884 Copynumber: 1.8 Consensus size: 875
13325678 GTTTCGTCGG
* * * * *
13325688 TTGGCTTAGGCATATGGAGTTCATTCCCTGTCTAAGATTGGATCGGACCGAGGGTTGGGGCAACA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATTGGATCGGACCAAGGGTTGCGGCAACA
* * * *
13325753 GGATTGGCAGCATGCAAAAGGGGACCCGGCCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCG
66 GGATCGGCAGCACGCAAAAGGGGACCCCGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
13325818 GCTGAGCACCCGCACGCTCATTCCGTGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAAGC
131 GCTGAGCACCCCCACACTCATTCCGTGGTTGACTTAGGCATACGGAGTTCATACCCAATCTAAGC
13325883 ATACGGAATTCATTCCCAGTCTAAGATCAGATCGA-ACAAAGGGTTACGACAGCACATGCTGGGC
196 ATACGGAATTCATTCCCAGTCTAAGATCAGA-CGAGACAAAGGGTTACGACAGCACATGCTGGG-
*
13325947 TT-GAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCATCATCGTCGGAGCATCATCGGAGA
259 TTCGAGCATGTGTTGCTGCCGCATTTTTCTTCGTCGAGGCATCA---TC---G-----TCGGAGA
* * *
13326011 ACCTAACCGGCGACATTGGGGTTCC-AGTGATCAGGGGGGTCGGGGGGT-TTGCGCACATCATGT
313 ACCTAACCGACGACATTGGGGTTCCGA-CGATC-GGGGGGGCGGGGGGTGTT-CGCACATCATGT
*
13326074 GCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
375 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13326139 CACC-CTCTTAAAGAGCATTTGAG-A-T-G-TAGCCATTAAAGTGTCT-AAAATGGGGACACTTT
440 CACCTC-CTTAAAGAGCATTTGAGTAGTCGATAGCCATTAAAGTGTCTGAAAATAGGG-CAC-TT
* * *
13326198 TTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATTCCAA
502 TTTCAAAATGGTCACAAAATCTTATACACTTCGAGTTTTAAGCTGAATGTTTTTGTGCATGCCAA
*
13326262 AAAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAA
567 AAAAAATACAAGGATCACATCTAAAAAGTTT-AGGCCAAAACTCCTTCGAAAAAAATTTTAAAAA
* **
13326327 ATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAC
631 ATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAC
*
13326392 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACATA
696 TTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTAGCACATA
13326457 GAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCATGTGCATCCCGTCT
761 GAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCATGTGCATCCCGTCT
13326522 CTCTGGTCGGCGTAGTGCCCGCCCGTCCGCCCACCCGTTTGTTTCATCAA
826 CTCTGGTCGGCGTAGTGCCCGCCCGTCCGCCCACCCGTTTGTTTCATCAA
** *
13326572 TTGGCTTAGGTGTACGGAGTTCATTCCCAGTCTAAAATTGGA-CTGGACCAAGGGTTGCGGCAGC
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATTGGATC-GGACCAAGGGTTGCGGCAAC
* * * *
13326636 ATGATCGGTAGCACGCAGAGGGGGACCCCGCCGATCCCCGGCTTGC-CATCCCGCCCCTCTGGCC
65 AGGATCGGCAGCACGCAAAAGGGGACCCCGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
13326700 GGTTGAGCACCCCCACACTCATTTCGTGTGTTGACTTAGGCATATGGAGTTCTTTCCCAATCTAA
130 GGCTGAGCACCCCCACACTCATTCCGTG-GTTGACTTAGGCATACGGAGTTCATACCCAATCTAA
* * * * ** * **
13326765 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGGTAGCACATGCTGGG
194 GCATACGGAATTCATTCCCAGTCTAAGATCAGACGAGACAAAGGGTTACGACAGCACATGCTGGG
* * * * *
13326830 TTCGGGCTTGTGTTGCTGCCGTATTTTTCTTCGTCGGGGCATCATCGTCGGAGAACCTGACCGAC
259 TTCGAGCATGTGTTGCTGCCGCATTTTTCTTCGTCGAGGCATCATCGTCGGAGAACCTAACCGAC
* * * *
13326895 GGCATTGGGGTTTCGACGATCGGGGGGGCGGGGGGTGTTCGCACGTGATGTGCGATGGGTGCTGG
324 GACATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTTCGCACATCATGTGCGATGGGTGCTGG
*
13326960 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAGA
389 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGA
* *
13327025 GCATTTGAGATTTTACAGGTTTGCTGCGAATAGGCATTAAAGTGTCTGAAATTAGGGCACTTTTT
454 GCATTTGAG----T--A-----G-T-CG-ATAGCCATTAAAGTGTCTGAAAATAGGGCACTTTTT
* *
13327090 CAAAATGGTCACAAAATCTTATACACTTCGAGTTTTAAGCTGAATTTTTTTGTGCATGCCAACAA
505 CAAAATGGTCACAAAATCTTATACACTTCGAGTTTTAAGCTGAATGTTTTTGTGCATGCCAAAAA
** ** *
13327155 AAATACAAGGATCATGTCTACCAAGTTTAGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCT
570 AAATACAAGGATCACATCTAAAAAGTTTAGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCC
* * *
13327220 CGAACCGCAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCTTGAAACTTCA
635 CAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCA
13327285 CGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAA
700 CGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAA
13327321 ACTGGGCCGA
Statistics
Matches: 653, Mismatches: 69, Indels: 49
0.85 0.09 0.06
Matches are distributed among these distances:
872 108 0.17
873 35 0.05
874 1 0.00
878 1 0.00
879 1 0.00
881 2 0.00
883 46 0.07
884 214 0.33
886 1 0.00
888 1 0.00
889 135 0.21
890 101 0.15
891 7 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATTGGATCGGACCAAGGGTTGCGGCAACA
GGATCGGCAGCACGCAAAAGGGGACCCCGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
GCTGAGCACCCCCACACTCATTCCGTGGTTGACTTAGGCATACGGAGTTCATACCCAATCTAAGC
ATACGGAATTCATTCCCAGTCTAAGATCAGACGAGACAAAGGGTTACGACAGCACATGCTGGGTT
CGAGCATGTGTTGCTGCCGCATTTTTCTTCGTCGAGGCATCATCGTCGGAGAACCTAACCGACGA
CATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTTCGCACATCATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGC
ATTTGAGTAGTCGATAGCCATTAAAGTGTCTGAAAATAGGGCACTTTTTCAAAATGGTCACAAAA
TCTTATACACTTCGAGTTTTAAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACA
TCTAAAAAGTTTAGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTT
TCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTAGCACATAGAAATATGAAGATGTGCCTA
AACCCACTTACCACCCTATCGATCCACGGCATGTGCATCCCGTCTCTCTGGTCGGCGTAGTGCCC
GCCCGTCCGCCCACCCGTTTGTTTCATCAA
Found at i:13329095 original size:26 final size:26
Alignment explanation
Indices: 13329065--13329117 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13329055 GTTGACTTAG
13329065 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13329091 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13329117 G
1 G
13329118 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13329220 original size:904 final size:900
Alignment explanation
Indices: 13327327--13331083 Score: 5057
Period size: 894 Copynumber: 4.2 Consensus size: 900
13327317 ACAAACTGGG
*
13327327 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTC-ACCGA
1 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCA-CATTTTTCTTCGCCCGA
* ** *
13327391 GG---CA---CC--AGCATCGCCGGAGAACCTGATCGGCAACATTGGGGTTCCGGCGATCGGGAG
65 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGAG
*
13327448 GGCCGGGTGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
130 GGCC-GG-G-GGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
13327513 CTAATCTCT-ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTAGAGATTTTACAGGTTT
192 CT-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
13327577 GCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGT
256 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
13327642 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAA
321 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT-AA
* * *
13327707 AAAGTTTGGGGA-CAAAAATCCTCCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTG
385 AAAGTTT-GGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTA
* *
13327771 AAAATCA-TGAACAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGAC
449 AAAAT-AGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC-TAAGGGAC
* * * *
13327835 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATCAAGTTGTACCTAAA
512 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * * * * * * *
13327900 CCAACCTGCCACCCTATCGATCCATGGCATGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGC
577 CCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAATGCCCGC
* * *
13327965 CCGTCCGCCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCACTCCCAGTCTAAGA
642 CCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** * **
13328030 TTAGACCAGACTGAGGGTTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCTGATTGATCCC
707 TCAGACCAGACCGAGGGTTGCAGCAACAGGATCAGCAGCACGCAGAGGGGGACC-GACCGATCCC
* * * * *
13328095 TGGCTTGCGCATCCCGCCCCTCTAGCCAGCCGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
771 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
* * * *
13328160 GGCCTACAGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGATCGGATCAGA
836 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * *
13328225 CCGAGTGTTGCGGCAGCACTTGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGA
1 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CACATTTTTCTTCGCCCGA
* * * ** *
13328289 GGTACCATCGCCAGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCCGATTATCGGGCG
65 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGAG
*
13328354 GGCCGGGGGTTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
130 GGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCT
* *
13328419 ATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
194 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
13328484 ACCAGTAGCCATTTAAGTGTCT-AGAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTAC
259 GCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* **
13328548 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
323 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAA
* * * *
13328613 GTTTGGGACC-AAACTTCTTCCAAAAAAATTTTAAAAAATTTCGAACCGTAAAAAGTTTCAAAAA
388 GTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAA
* * *
13328677 TAGTGAAAAATAGAAAATAAGTCATCTTGCCATGAAACTTCACGTGAAGG-T-CGGGACCATTGT
453 TAGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTAAGGGACCATTGT
* *
13328740 ATGAATTTAAAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
518 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
13328805 TACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTCGGCATAATGCCCGCCCGCCC
583 TACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAATGCCCGCCCGCCC
13328870 GCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
648 GCCCG--C-T-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
13328935 AGACTAGACCGAGGGTTGCAGCAACAGGATCAACAGCATGCAGAGGGGGACTCGATCGATTCCCC
709 AGACCAGACCGAGGGTTGCAGCAACAGGATCAGCAGCACGCAGAGGGGGAC-CGACCGA-TCCCC
*
13329000 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAG
772 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
13329065 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
837 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* ** *
13329129 CCGAGGGATGGGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCCG-
1 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CACATTTTTCTTCGCCCGA
* * * * *
13329193 GGCACCATCGTCGGAGAACCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-GGGGG
65 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGAG
13329257 GGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
130 GGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCT
* *
13329322 ATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
194 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
13329387 TCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
259 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * **
13329452 CTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAAAAAAAATAC-AGCGATCATGTCTACCAA
324 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG-GATCACGTCTAAAAA
** * ** *
13329516 GTTTGTGG-CCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAA
388 GTTTG-GGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAA
* * *
13329580 ATCGTGAAAAATAGAAAATGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGGCCATT
452 ATAGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC-TAAGGGACCATT
** *
13329645 GTATGAATTTACAAGCCATAAAAATAACATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
516 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
** * ** *
13329710 CCTACCACCCTATCGATCCACGACTTGCGCATCCTATCTCTTTGGCCAACAT--TG--TGCCCGC
581 CCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAATGCCCGCCCGC
* ** * * *
13329771 CCG--C-C-CGCTCGTTTCATCTTTTGGCTTAGGCATACGGAGTTGATTCCTAGTCTAAGATCGG
646 CCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * ** * * * *
13329832 ACCAGACCGAGGGTTACGGTAGTAGGATCGGTAGCACGTAGAGGGAGACCGAGCCGATCCCCGGC
711 ACCAGACCGAGGGTTGCAGCAACAGGATCAGCAGCACGCAGAGGGGGACCGA-CCGATCCCCGGC
*
13329897 TTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
775 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* *
13329962 TACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGA
840 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * * *
13330023 TCAAGAGTTACGGCAGCACATGCTGGACTCGAGCATGTGCTGGTG-ATGCTTTTTTCTTCGCCTG
1 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCA--CATTTTTCTTCGCCCG
* * *
13330087 -GGCACCATCGCCGGAGCATCGTCGGAGAACCTCACCGGCGGCATTGGGGTTCCGACGATC-GCA
64 AGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGA
* * *
13330150 TGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCC
129 -GGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
13330215 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
193 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
13330280 TGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
258 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* ** *
13330345 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGTGTATAAAAA
323 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAA
* * *
13330410 GTTTGGGGCCAAAACTACTTCCGAAAAAATTTCAAAAAATCTCGAACCGTAAAAAGTTTTAAAAA
388 GTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAA
* * *
13330475 TAATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTG
453 TAGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC-TAAGGGACCATTG
* * *
13330540 TATGAATTTACAAGCCATAAAAGTGGCAATGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
517 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
13330605 CTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
582 CTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAATGCCCGCCCGCC
* * * * ** *
13330670 TGCCCAC-CTGTTTGTTTCGTCGGTTGGCTCT-GGTGTACGGAGTTCATTCCCAATCTAAGATCA
647 CGCCCGCTC-GCTCGTTTCGTCGGTTGGCT-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** ** * *
13330733 GACCGGAGTGAGGGTTGCAGCAGA-AGGATTGGTAGCACACAGAGGGGGACCCGACCGATCCCCG
710 GACCAGACCGAGGGTTGCAGCA-ACAGGATCAGCAGCACGCAGAGGGGGA-CCGACCGATCCCCG
* ** * *
13330797 GCTTGCCCATGTCGCCCCTCTGGCCGCCAT-AGCGCTCGCACGCTCGTTTCATGGGTTGACTTAG
773 GCTTGCGCATCCCGCCCCTCTGGCCGGC-TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * *
13330861 GCATACGGAGTTCATTCCTAGTCTAAGCATATGGTGTTCATTCCCAGTCTAAGATCAGACCGGG
837 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
*
13330925 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTC-ACCGA
1 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCA-CATTTTTCTTCGCCCGA
* ***
13330989 GG---CA---CC--AGCATCGCCGGAGAACCTGATCGGCAATATTGGGGTTCCGACGATCGGGAG
65 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGAG
*
13331046 GGCCGGGTGTGGGTGTGCGCACATGATGTGCGATGGGT
130 GGCC-GG-G-GGGTGTGCGCACATGATGTACGATGGGT
13331084 CCCCGATCGA
Statistics
Matches: 2536, Mismatches: 269, Indels: 109
0.87 0.09 0.04
Matches are distributed among these distances:
892 1 0.00
893 2 0.00
894 684 0.27
895 153 0.06
896 5 0.00
897 28 0.01
898 66 0.03
899 133 0.05
900 2 0.00
901 9 0.00
902 353 0.14
903 434 0.17
904 498 0.20
905 6 0.00
906 48 0.02
907 114 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCACATTTTTCTTCGCCCGAG
GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGAGG
GCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTT
TGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATAG
TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAATGCCCGCCCGCCCGCC
CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
ACCGAGGGTTGCAGCAACAGGATCAGCAGCACGCAGAGGGGGACCGACCGATCCCCGGCTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
Found at i:13329989 original size:26 final size:26
Alignment explanation
Indices: 13329959--13330011 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13329949 GTTGACTTAG
13329959 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13329985 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13330011 G
1 G
13330012 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13330891 original size:26 final size:26
Alignment explanation
Indices: 13330861--13330913 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13330851 GTTGACTTAG
*
13330861 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
13330887 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13330913 G
1 G
13330914 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13333750 original size:26 final size:26
Alignment explanation
Indices: 13333721--13333773 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13333711 CCGGTCTGAA
13333721 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13333747 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13333773 C
1 C
13333774 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13333905 original size:902 final size:893
Alignment explanation
Indices: 13332105--13335119 Score: 4126
Period size: 902 Copynumber: 3.4 Consensus size: 893
13332095 TTGGATCGGA
* *
13332105 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGGGCGGGTGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---GCGGGCGGGCGGGC
* * * * *
13332170 GGGCACTAGGTCGGCCAGAGAGATGTGATGCGCAAGCCGTGGATCGATAGGCTGGTAGGTGGATT
62 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
13332235 TAGGCACATCGTCATATTT-TTAAGTGCCAATGCCATTTTGATGGCTTGTAAATTCATACAATGG
127 TAGGCACATCTTCATATTTCTT-AGTGCCAATGCCATTTTGATGGCTTGTAAATTCATACAATGG
* * **
13332299 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTT
191 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCA
* * *
13332364 AAACTTTTTACGGTTCCGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCC-AAC-CT-TA
256 AAACTTTTGACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTCTGTA
* * *
13332426 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGCTAAAAACTCGTAGTGTACAA
321 GTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
13332491 GATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTGAGACACTTTAATGGCTACTAGTAGCAAAC
386 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
13332556 CTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
451 CTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
13332621 CAATATAAGGGCCAAGTACCGGCATCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGA
515 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * * ** **
13332686 TCGTCGGAGCCCTAATGCCGTCGGTTAGGTTCTTCGACGATGCTCCGGTGATGGTGCCCCGGTGA
580 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-CGATGCTCCGACGATGGTGCCCCGACGA
* * ** * *
13332751 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGCCACAGCCCTCGGTCCAGTCC
644 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGT-C
* *
13332816 AATATTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
708 GA-ATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* *
13332881 CCCACGAAATGAGCGTGC-AGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCCGGGGATCG
772 CCCACGAAATGAGCGTGCGA-GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATC-
* * * * * * *
13332945 GTCGGGTCCCCCTCTGCGTGCTGCTGATACTACTACCGCAACCCTCGATCCGGTCTGATC
834 GACAGGTCCCCCTCTGCGTGCTACCGATCCTACTACTGCAACCCTCGGTCCGGTCTGATC
* * * * * * * *
13333005 TTAGACTGGGAATGAACTCCGTATGACAAAACCAACCGAAGAAATGAGCGTGCGTGCGAGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* *
13333070 ATTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
13333135 AACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 CACATCTTCATATTTCTTAGTGCCAATGCCATTTTGATGGCTTGTAAATTCATACAATGGTCCCT
*
13333200 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACT
196 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACT
*
13333265 TTTGACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTCTGTAGTCGT
261 TTTGACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTCTGTAGTCGT
* *
13333330 GATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
326 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
13333395 TGTGACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
391 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
13333460 AAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
456 AAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
13333525 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACCCGGCCCCCCCGATC
520 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC-CCCGGCCCCCCCGATC
* * * * *
13333590 ATCAGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCAATGCTCCGACGATGGTGCCCCGACAAAG
582 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCCCCGACGAAG
*
13333655 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCCGGTCTGA
646 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTC-GA
*
13333720 ACTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
710 A-TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * *
13333785 CACGAAATGAGCGTCCGAGCGCTCAGCCAGCCAGAGGGGCGAGATGCGCAAGTCGGGGATCGACC
774 CACGAAATGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGA-C
* *
13333850 AGGTCCCCCTCTGCGTGCTACCAATCCTACTACTGCAACCCTCGGTCTGGTCTGATC
837 AGGTCCCCCTCTGCGTGCTACCGATCCTACTACTGCAACCCTCGGTCCGGTCTGATC
* * * *
13333907 TTAGACTGGAAATGAACTCCGTATGCCTGAGCCAACCTACTAAACGAGCGGGCGGACGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGGCGGGC
** * * * * *
13333972 GGGCACTTTGTCGACCAGAGATATGGGATGCGCAAGCCGTGGATCAAGAGGGTGGTAGGTGGGTT
62 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
13334037 TTGGCACATCTTCATATTTCTGCAG-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TAGGCACATCTTCATATTTCT-TAGTGCCAATGCCATTTTGATGGCTTGTAAATTCATACAATGG
* * **
13334101 TCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTG
191 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCA
* *
13334166 AAACTTTTTACGGTTCAGGATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAACCT-TGGT
256 AAACTTTTGACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTCT-GT
* *
13334229 AGAT-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAATGTAC
320 AG-TCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
13334293 AAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAA
384 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* ** **
13334358 ACCTGTAAAATCTCAAATGCTCTTGAAGGGAGCATGAGTTCTCGAGGTTTGATTCGGGATAGGGG
449 ACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
13334423 GCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACATCCCCCCGG-CCCCC
513 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
* * * * * *
13334487 CGATCGTCGGAACCCCAATGCCGTCGATCACGTTCTCCGGCGATGCTCAGACGATGCTGACTCGA
577 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCCCCGA
* * * * *
13334552 CGAGGAAAAATGAGACACCAGCAAATGCCCGAGCCCAGCATGTGCTGTCGTAACCCAT-GGTCTG
641 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCC-TCGGTCCG
* *
13334616 GTCCGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAGG
705 GT-CGA-ATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * * * * *
13334681 TTAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCTGAGGA
768 TCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GGGGA
* * * * * * * * **
13334746 TCGACTGAGTCCCCCTCTACATGCTAGCGATCCTGCT-GTCACAACCGTCGGTCCGGTCCAATC
832 TCGACAG-GTCCCCCTCTGCGTGCTACCGATCCTACTACT-GCAACCCTCGGTCCGGTCTGATC
* *
13334809 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGTC-GGC---CGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * * *
13334870 ACTACGCCAGCCAGAGAAACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
13334935 CATATCTTCATATTTCTATA-TGCCAATGCCATTTTGATGGCTTGTAAATTCATACAATGGTCCC
131 CACATCTTCATATTTCT-TAGTGCCAATGCCATTTTGATGGCTTGTAAATTCATACAATGGTCCC
** * * *
13334999 TTAAGCCTTCATATGAAGTTTCATGGCAAGACGACTCGTCTTCTATTTTTCACAATTTTCAAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAAC
* *
13335064 TTTTTG-CGGTTC-GAGATTTTTTAAAA-TTTTTCAGACGGAGTTTTGGCCCCAAACTC
260 -TTTTGACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTC
13335120 GAAGTGTACA
Statistics
Matches: 1880, Mismatches: 203, Indels: 69
0.87 0.09 0.03
Matches are distributed among these distances:
893 1 0.00
894 213 0.11
895 7 0.00
896 238 0.13
897 8 0.00
898 5 0.00
899 231 0.12
900 41 0.02
901 10 0.01
902 640 0.34
903 10 0.01
904 8 0.00
905 258 0.14
906 209 0.11
907 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTTAGTGCCAATGCCATTTTGATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACT
TTTGACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTCTGTAGTCGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCG
GAACCCCAATGCCGTCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCGAATTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
TGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCGGGGATCGACAGGTCCCCC
TCTGCGTGCTACCGATCCTACTACTGCAACCCTCGGTCCGGTCTGATC
Found at i:13334653 original size:26 final size:26
Alignment explanation
Indices: 13334624--13334675 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13334614 TGGTCCGATA
13334624 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13334650 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13334676 CTAGGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:13337207 original size:899 final size:903
Alignment explanation
Indices: 13335450--13339637 Score: 5885
Period size: 899 Copynumber: 4.6 Consensus size: 903
13335440 AATCCGATCT
* * ** *
13335450 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCAAGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCCCAGCCG
* ** * * * * ** *
13335515 GCCAGAAGG-GCGGGATGCATAAACCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCAATCCT
66 GCCAG-AGGAGTGATATGCACAAGCCGAGGATCGATCGAGTCCCCCTCTATGTGCTGTCGATCCT
* *
13335579 GCTGCCACAACCCTCTA-TCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
130 GCTGCCACAACCCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAA
* * * ***
13335643 CCGACGAAACGAGCGGAC-G--GGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATTTACAAG
194 CCGACGAAACGAGCGGGCGGACGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
*
13335705 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
13335770 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
324 TTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** * **
13335835 ACTCGTCTTCTATTTTTCAGGATTTTCAAAACTTTTTGCGATTCAGGATTTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC
* *
13335900 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGGATGCACAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
13335965 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTAGTTGAAAAAAGTGTCCCCATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCA
** * *
13336030 GACACTTTAATGGCTACTGATAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
* * * *
13336095 TCTCAAGGTTTGATGAGGGATA-AGGGCCAATATAAGGGCCAAGTACCAGCACCCTTCGCACATC
649 TCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
13336159 ATGTGCTCACACCCCC-CTGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGCTCTCC
714 ATGTGCGCACACCCCCTCTGG-CCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *** * * *
13336223 GGCAATGCTCCGACGATGGTGCCCCGGTAAAGAAAAATGT-GACACCTGCAAATGCTCGAGCCCA
778 GACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGTAG-CACCAGCACATGCCCGAGCCCA
* * * * * * * *
13336287 GTATGTGCTACCGCAACCCTCGGTCCGGTCCGATCATAGATTATGAATGAACTCCGTATGCT
842 GCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTATGAATGAACTCCGTATGCC
* * * *
13336349 TAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA
1 TAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCCCAGCCG
* ** * * * ** *
13336414 ACCAGAGGAGTGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTGTACATGTTGTCGATCCTG
66 GCCAGAGGAGTGATATGCACAAGCCGAGGATCGATCGAGTCCCCCTCTATGTGCTGTCGATCCTG
* * * * * *
13336479 CTGCCACAACCCTCGGTCTGATCTTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCACT
131 CTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACC
* * * *
13336544 GACGAAACGAGCGGGCGGGCGAGTGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCCAGC
196 GACGAAACGAGCGGGCGGACG-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * *
13336609 CGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATA
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * * *
13336674 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAATTTCATGGCAAGGCGA
325 TTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * * *
13336739 CTCGTTTTTTATTTTTCATAATTTTTTAATCTTTTTGTGGTTTGGGATTTTTTCAAATTTTTTCA
390 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCG
*
13336804 GAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTT-TTGGAATGCAC-AAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
13336867 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAG
* * *
13336932 ACACTTTAATGGTTATTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
* * * * *
13336997 CTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTATCGGCACCCACCGCACATCA
650 CTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
13337062 TTTGCGCACA-CCCC-C-GGCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGA
715 TGTGCGCACACCCCCTCTGGCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * *
13337124 CGATGCTCTGATGATGGTGCCCCAACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCTAGCA
780 CGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCA
* *
13337189 TGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGTGAATGAACTTCGTATGCC
845 TGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTATGAATGAACTCCGTATGCC
* * * * *
13337248 TAGACTGGGAATGAACTCTGTATGCCTATGTTAACCCACGAAACGAGCGTGCCGACACCCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCCCAGCCG
* *
13337313 GCCAGAGGCA-TGATATGCACAAGCCGAGGATCGGTCGAGTCCTCCTCTATGTGCTGTCGATCCT
66 GCCAGAGG-AGTGATATGCACAAGCCGAGGATCGATCGAGTCCCCCTCTATGTGCTGTCGATCCT
* ** ** * *
13337377 GCTGCCACAACCTTTGGTCCAGT-TCGATCTTAGACTGGGAATGAACTCCATATTCCTAAGCTAA
130 GCTGCCACAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAA
* * * *
13337441 CCGATGAAACGAGCGGGTGGACGAGCGGGCGGGCACTATGTCGGCCAGAGAGATGGGATGCGCAA
194 CCGACGAAACGAGCGGGCGGACG-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
13337506 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* *
13337571 TTTTTTTTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
323 TTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
13337636 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGACTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT
13337701 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * * * *
13337766 AATTTCAGGTAAAAAGTCGAAGTGTACATGATTTTGTTACCATTTGAAAAAAGTGTCGCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTC
* * * *
13337831 AGACACTTTAATTGCTACTGGACAGCAAACTTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGA
583 AGACACTTTAATGGCTACTGG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
* ** *
13337896 GTTCTCGAGGTTTAATGAGGCATAATGGGCCAATATAAGGGCCAAGTACCAGGACCCATCGCACA
647 GTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
13337961 TCATGTGCGCACACCCCC-CTTCGGCCCCCCGATCACTGGAACCCCAATGCAGTCGGCCAGCTTC
712 TCATGTGCGCACACCCCCTC-T-GGCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTC
* * *
13338025 TCCAAAGATGCTCCGATGATGGTGCCCCGACGAA-AAAAATGCAGCACCAGCACATGCCCGAGCC
775 TCCGACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCC
* *
13338089 CAGCATGTGCTGCTGCAACCCTCAGTCTGGTCTGATCTAAGACTATGAATGAACTCCGTATGCC
840 CAGCATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTATGAATGAACTCCGTATGCC
* * * *
13338153 TAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAACGAACGTGCCGGCGCCCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCCCAGCCG
* * * * * * *
13338218 GCCAGAGGGGCGATATGCATAAGCTGAGGATCGATCGAGTCCCCCTCTGTGTGCTGCCAATCCTG
66 GCCAGAGGAGTGATATGCACAAGCCGAGGATCGATCGAGTCCCCCTCTATGTGCTGTCGATCCTG
* *
13338283 CTGCCACAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATTCCTAAGCCAACC
131 CTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACC
* * *
13338348 GACGAAACGAGCGAGCGGACGGACGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGTAAGC
196 GACGAAACGAGCGGGCGGACGG-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* *
13338413 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * *
13338478 CTTTTGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGA
325 TTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
13338543 CTCCTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCG
390 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCG
* * *
13338608 AAAGGAGTTTTGGCCCCAAACTTGGTATATGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
13338673 ATTCAGCTAAAAAGTCTAAGTGTACACGATTTTGTGACCATTTGGAAAAAGTTTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAG
* * * *
13338738 ACACTTTAATTGCTAGTGGTAGCAAACCTGTAAAATCTCAAATGCTGTTTAAAGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
* * *
13338803 CTCGAGGTTTAATGAGAGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCTATCGCACATCA
650 CTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
13338868 TGTGCGCACA-CCCCACTGACCACGCCGATAGCCGGAACCCCAATGCCGTCTGTCAGGTTCTTCG
715 TGTGCGCACACCCCCTCTGGCC-CCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCG
* **
13338932 ACGTTGCTCCGATGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCTGGC
779 ACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGC
* * * * *
13338997 ATGTGCTGCTGCAACCCTCGGTCTGGTTTGATCTTGGATTGTGAATGAACTCTGTATGCC
844 ATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTATGAATGAACTCCGTATGCC
* * **
13339057 TAGACTGGGAATGAACTCCGTATGCCTATGTTAACCCACGAAACGAGCATGTC-GATGCCCAGCC
1 TAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTG-CGGGCGCCCAGCC
* * * * *
13339121 GGCCAAAGGCGTGATATGCACAAGTCGAGGATCGGTCGAGTCCCCCTCTATGTGTTGTCGATCCT
65 GGCCAGAGGAGTGATATGCACAAGCCGAGGATCGATCGAGTCCCCCTCTATGTGCTGTCGATCCT
* * * * * *
13339186 GTTGCCGCAACGCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATTCCTAAGCCAAC
130 GCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAAC
* * * *
13339251 CGACGAAACGAGCGAGCGGACGGACGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGAGTAAG
195 CGACGAAACGAGCGGGCGGACGG-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
**
13339316 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
13339381 TTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
324 TTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
13339446 ACTCATTTTCTATTTTCCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC
* * *
13339511 GGAAGGATTTTTGGCCCCAAACTTGGTATATGTGATCTTTGTATTTTTGTTGGCATGCACAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
13339576 AATTCAGCTAAAAATTCGAAGTTTACACGATTTTGTGACCATTTGGAAAAAGTGTCCCCATT
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATT
13339638 NNNNNNNNNN
Statistics
Matches: 2945, Mismatches: 320, Indels: 43
0.89 0.10 0.01
Matches are distributed among these distances:
898 4 0.00
899 768 0.26
900 15 0.01
901 228 0.08
902 168 0.06
903 326 0.11
904 735 0.25
905 635 0.22
906 66 0.02
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (903 bp):
TAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCCCAGCCG
GCCAGAGGAGTGATATGCACAAGCCGAGGATCGATCGAGTCCCCCTCTATGTGCTGTCGATCCTG
CTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACC
GACGAAACGAGCGGGCGGACGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
TTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
TCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCTCTGGCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
GATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTATGAATGAACTCCGTATGCC
Found at i:13337259 original size:26 final size:26
Alignment explanation
Indices: 13337222--13337275 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
13337212 GGTCTGATCT
*
13337222 TAGACTGTGAATGAACT-TCGTATGCC
1 TAGACTGGGAATGAACTCT-GTATGCC
13337248 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCTGTATGCC
13337274 TA
1 TA
13337276 TGTTAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCC
Found at i:13342152 original size:26 final size:26
Alignment explanation
Indices: 13342123--13342175 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13342113 GTTGACTTAG
*
13342123 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13342149 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13342175 G
1 G
13342176 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13342984 original size:18 final size:18
Alignment explanation
Indices: 13342961--13343003 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
13342951 TTCAAACGAT
13342961 TTTTTTTAGCTGAATTTA
1 TTTTTTTAGCTGAATTTA
*
13342979 TTTTTTTAGTTGAATTTA
1 TTTTTTTAGCTGAATTTA
13342997 TTTTTTT
1 TTTTTTT
13343004 GTGCATGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.19, C:0.02, G:0.09, T:0.70
Consensus pattern (18 bp):
TTTTTTTAGCTGAATTTA
Found at i:13344336 original size:708 final size:709
Alignment explanation
Indices: 13343341--13344771 Score: 2167
Period size: 708 Copynumber: 2.0 Consensus size: 709
13343331 CAAGTTCCTA
*
13343341 CCCAGTCTAAGATCAGACCAGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATTTGCTG
1 CCCAGTCTAAGATCAGACCAGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTG
* ** *
13343406 GTGCCGCATTTTTCTTCGTCGGAGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGACA
66 GTGCCGCATTTTTCTCCGTCGGAGCACCATCCACGGAGCATCACCGGAGAACCTGACCGACAACA
* * * * *
13343471 TTGGGGTTCCGGTGATCGAGGGGTGTGCGTACATGATGTGTGATGGGTGCTGGTACTTGGCCCTT
131 TTGGGGTTCCGGCGATCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTAGCCCTT
*
13343536 TTATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
196 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
** * *
13343601 TTACAAGTTTGCTGTGAGTAGCCATTAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCAC
261 TTACAAGTTTGCTGCCAGTAACCATTAAAGTGTCTAAAGTGGGGACACTTTTTTCAAATGGTCAC
* * *
13343666 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATTACAAGGAT
326 AAAATCTTGTACACTTCAACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * *
13343731 CACGTCTACCATGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTTAAAACATCTCGAACCGTAA
391 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA-TTTTAAAAAATCTCGAACCATAA
** * * *
13343795 AAAGTTTTGAAAATCGTGAAAAATAGAAACCGAGAT-GTCTTGCCATGAAACTTCACGTGAAGGC
455 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG-TCATCTTGCCAAGAAACTTCACGTGAAGGC
* * **
13343859 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGAT
519 TTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCAAGCAAAAATACAAAGAT
* * *
13343924 GTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTAGCCGGTGT
584 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTATAGCCGGCGT
* * * * * *
13343989 AGTGCCCGC-C-CTC-CCGTCCGCTCGTTTCGTCAGTTGGCTTAGGTATATGGAGTTCATT
649 AGAGCCCGCTCGCCCACCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGGTCATT
* * *
13344047 CCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTG
1 CCCAGTCTAAGATCAGACCAGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTG
** * *
13344111 GTGCCGTGTTTTTCTCCGTCGTG-GCACCATCACACGGAGCATCATCGGAGAACCTGACCGGCAA
66 GTGCCGCATTTTTCTCCGTCG-GAGCACCATC-CACGGAGCATCACCGGAGAACCTGACCGAC-A
*
13344175 ACCATTGGGGTTCCGGCGATCTG-GGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTATTTAG
128 A-CATTGGGGTTCCGGCGATC-GAGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTAG
* * *
13344239 CCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTG
191 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
* *
13344304 AGATTTTACAGGTTTGCTGCCAGTAACCATTAAATTGTCTAAAGTGGGGACACTTTTTTCAAATG
256 AGATTTTACAAGTTTGCTGCCAGTAACCATTAAAGTGTCTAAAGTGGGGACACTTTTTTCAAATG
13344369 GTCACAAAATCTTGTACACTTCAACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
321 GTCACAAAATCTTGTACACTTCAACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
*
13344434 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTTGAACC
386 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
13344499 ATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAA
451 ATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAA
* *
13344564 GGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCAAGTAGAAATACAAA
516 GGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCAAGCAAAAATACAAA
* * *
13344629 TATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTTGTCTCTATAGCCTG
581 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTATAGCCGG
* * *
13344694 CGTAGAGCCCGCTCGCCCGACCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCGTACGGAGGTCATT
646 CGTAGAGCCCGCTCGCCC-ACCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGGTCATT
*
13344759 CCCAATCTAAGAT
1 CCCAGTCTAAGAT
13344772 TGAACTAGAC
Statistics
Matches: 651, Mismatches: 63, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
705 68 0.10
706 45 0.07
707 2 0.00
708 476 0.73
709 8 0.01
710 2 0.00
712 50 0.08
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (709 bp):
CCCAGTCTAAGATCAGACCAGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTG
GTGCCGCATTTTTCTCCGTCGGAGCACCATCCACGGAGCATCACCGGAGAACCTGACCGACAACA
TTGGGGTTCCGGCGATCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTAGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAAGTTTGCTGCCAGTAACCATTAAAGTGTCTAAAGTGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCAACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAA
AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCAAGCAAAAATACAAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTATAGCCGGCGTAG
AGCCCGCTCGCCCACCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGGTCATT
Found at i:13344939 original size:26 final size:26
Alignment explanation
Indices: 13344903--13344955 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13344893 GTTTAACTAG
13344903 GCATACGGAG-TCATTCCCAATCTAAA
1 GCATACGGAGTTCATT-CCAATCTAAA
*
13344929 GCATACGGAGTTCATTCCAGTCTAAA
1 GCATACGGAGTTCATTCCAATCTAAA
13344955 G
1 G
13344956 ATTGGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAATCTAAA
Found at i:13345842 original size:26 final size:26
Alignment explanation
Indices: 13345812--13345864 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13345802 GTTTACTTAG
* *
13345812 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
13345838 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13345864 G
1 G
13345865 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13346743 original size:26 final size:26
Alignment explanation
Indices: 13346713--13346765 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13346703 GTTAACTTAG
13346713 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13346739 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13346765 G
1 G
13346766 ATCGGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13346939 original size:904 final size:904
Alignment explanation
Indices: 13344037--13347645 Score: 4846
Period size: 910 Copynumber: 4.0 Consensus size: 904
13344027 TTAGGTATAT
* *
13344037 GGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAG
1 GGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * *
13344102 CATGTGCTGGTGCCGTGTTTTTCTCCGTCGTGGCACCATCACACGGAGCATCATCGGAGAACCTG
66 CATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCAC-CGGAGCATCGTCGGAGAACCTG
* * *
13344167 ACCGGCAAACCATTGGGGTTCCGGCGAT--------C-TGGGGGTGTGCGCACATGATGTGCGAT
130 ACCGAC-AA-CATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * * * *
13344223 GGGTGCCGGTATTTAGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACTCCC
193 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
* *
13344288 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAATTGTCTAAAGTGGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAGTGGGG
* *
13344353 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGCTGAATTTTTTTGTGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
13344418 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
388 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** * *
13344483 TAAAAAATCTTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
453 TAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
* *
13344548 AGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
518 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * ** *
13344613 CAAGTAGAAATACAAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
583 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * * *
13344678 TTGTCTCTATAGCCTG-CGTAGAGCCCGCTCGCCCGA-CCGCCCGCTTGTTTCGTCGGTTGGCTT
648 CTGTCTCTCTGGCC-GACGTAGTGCCCAC-CGCCCTACCCGCCTGCTCGTTTCGTCGGTTGGCTT
* * * * * * * *
13344741 AGGCGTACGGAGGTCATTCCCAATCTAAGAT-TGAACTAGACTGAGGGTTGCGGTAGCAGGATCG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGCAGGATCG
* * * *
13344805 GTAGCATGCAGAGGAGGACCCGATCGATCCCTAGCCTGCGCATCCCGCCCCTCTGGCCGACTGAG
776 GCAGCACGCAGAGGGGGACCCGATCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
*
13344870 CACCCGC-CGCTCGTGTTCCATGGGTTTAAC-TAGGCATACGGAG-TCATTCCCAATCTAAAGCA
841 CACCCGCACGCTCGT-TT-CATGGG-TTAACTTAGGCATACGGAGTTCATTCCCAGTCT-AAGCA
13344932 TAC
902 TAC
** * * * * * *
13344935 GGAGTTCATT-CCAGTCTAAAGATTGGGACCGAACATGAGGGTTTACGACACCACATGCTGGGCT
1 GGAGTTCATTCCCAGTCT-AAGA-TCAGAACGGAC-CGAGGG-TTGCGGCAGCACATGCTGGGCT
* *
13344999 TGGGCATGTGCTGGTG-CAGTA-TTTTCTTCGTCCGGGAACAACCCATCACCGGAGCATCGTCGG
62 CGGGCATGTGCTGGTGCCA-TATTTTTCTTCGT-CGGG-GC-A-CCATCACCGGAGCATCGTCGG
* * * *
13345062 AGAACCTGACCAACAACATTGGGGTTCCGACGAATCGGGGGGGCCGGGGGGTGTTCACACATGAT
122 AGAACCTGACCGACAACATTGGGGTTCCGACG-ATCGGGGGGGCGGGGGGGTGTGCGCACATGAT
*
13345127 GTGCGATGGGTGCTGGTACTTGGCCCTTATAGTGG-CCCCTATCCCTCATCAAACCTCAAGAACT
186 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
13345191 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
251 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
*
13345256 AGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTT
316 AGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
13345321 TTGTGCATGCCAACAAAAAAATAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCTTTCCAAA
381 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * ** *
13345386 AAAATTTTAAAATATCTCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
446 AAAATTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
13345451 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
511 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
13345516 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTT
576 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
13345581 GCGCAT-CTCGTCTCTCTGGCCGGCGTAGTGCCCACCTG-CCTACCCGCCTGCTCGTTTCGTCGG
641 GCGCATCCT-GTCTCTCTGGCCGACGTAGTGCCCACC-GCCCTACCCGCCTGCTCGTTTCGTCGG
* * * * *
13345644 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCAG-ATCAGACTGAGGGTTGGGGTAGC
704 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGC
* * * * * *
13345708 AGGATCGGTAGCACGCA-ATGGGGGACCCGATCAATCCCTGGCTTGCGCATCCCACCTCTTTGGC
769 AGGATCGGCAGCACGCAGA-GGGGGACCCGATCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGC
* * *
13345772 CGACTGAGCGCCCGCACGCTCGTTT-AGTGGGTTTACTTAGGCATACGGAGTTTATTCCCAGTCT
833 CGACTGAGCACCCGCACGCTCGTTTCA-TGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCT
13345836 AAGCATAC
897 AAGCATAC
* * * * *
13345844 GAAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCT-GGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * *
13345908 CATGTGCTGGTGTCGTATTTTTCTTTGTCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGA
66 CATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGA
* * * *
13345973 TCGGCAACTTTAGGGTTCCGACGATCGGGGGGGCCGGTGGGGGTGTGCGCACATGATGTGCGATG
131 CCGACAACATTGGGGTTCCGACGATCGGGGGGG-CGG-GGGGGTGTGCGCACATGATGTGCGATG
* * *
13346038 GGTGCTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCC
194 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
*
13346103 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAA-TGGGG
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAGTGGGG
* * * ** *
13346167 ACACTTTTTCCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTAAATGGTTTCGTGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
13346232 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTT
388 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
13346297 TAAAAAATCTCAAACC-CAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCCTCTTGCCA
453 TAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
* * * *
13346361 TGAAACTTCACGTGAAGGCTTAGGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATCGA
518 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
13346426 CACGTAGAAATATTAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGACTTGCGCATC
583 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
13346491 CTGTCTCTCTGGCCGACGTAGTGCCCACC-CCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
648 CTGTCTCTCTGGCCGACGTAGTGCCCACCGCCCTACCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
*
13346555 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCATACCGAGGGTTGTGGCAGCAGGATCGGC
713 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * *
13346619 AGCATGCAGAGGGGGACCCGACCGAT-CCTCGGCTTGCGCATCCCGCCCCTC-GGTCGGCTGAGC
778 AGCACGCAGAGGGGGACCCGATCGATCCCT-AGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
*
13346682 ACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
842 ACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
13346745 GGAGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * *
13346810 CATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTG-CTGGAGAACCTG
66 CATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC-GGAGAACCTG
* ** *
13346874 ATCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGAGGGTGTGCTCACATGATGTGCG
130 ACCGACAACATTGGGGTTCCGACGATCGGGGGGG-C--GGGG-GGGTGTGCGCACATGATGTGCG
* * * * **
13346939 ATGGGTGCTGGTATTTTGCCCCTATATTGGCCCCCTATCCCTCATCAAACGTTGAGAACTCACAC
191 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
*
13347004 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA-TG
256 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TAAAGTG
* * *
13347068 GGGACACTTTTTTGAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAATTTTTTTGT
320 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * *
13347133 GCATGTAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAA
385 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * * * *
13347198 ATTTAAAAAAACCCAAACCGCAAACAGTTTCAAAAATCTTAAAAAATAGAAAACGAGTCATCCTG
450 TTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
13347263 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
13347328 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCCCCCTGTCGATCCACGGCTTGCGC
580 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *** * * * *
13347393 ATCCCGTCTCTCTGGCCGACGTAGTAAACACC-CGCCTGCCCACCCT-TTCATTTCGTCGGTTGG
645 ATCCTGTCTCTCTGGCCGACGTAGTGCCCACCGC-CCTACCC-GCCTGCTCGTTTCGTCGGTTGG
* *
13347456 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACC-GATCGAGGGTTGTGGCAGCAGAA
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGCAGGA
* * * * *
13347519 TCGGCAGCACGCATAGGGGGAGCC-AGTTGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGAC
773 TCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * ** *
13347583 TGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
837 TGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
13347646 ATCGGACCGG
Statistics
Matches: 2400, Mismatches: 257, Indels: 100
0.87 0.09 0.04
Matches are distributed among these distances:
897 7 0.00
898 14 0.01
899 7 0.00
900 15 0.01
901 181 0.08
902 276 0.12
903 268 0.11
904 509 0.21
905 279 0.12
906 145 0.06
907 8 0.00
908 13 0.01
909 45 0.02
910 577 0.24
911 56 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
GGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGA
CCGACAACATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAGTGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCTCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTG
TCTCTCTGGCCGACGTAGTGCCCACCGCCCTACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGATCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCC
GCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
Found at i:13347731 original size:158 final size:158
Alignment explanation
Indices: 13347443--13347760 Score: 453
Period size: 158 Copynumber: 2.0 Consensus size: 158
13347433 CACCCTTTCA
*
13347443 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGATCGAGGGTTG
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGATCGAGGGTTA
* * **
13347508 TGGCAGCAGAATCGGCAGCACGCATAGGGGGAGCCAGTTGATCCCCAACTTGCGCATCCCGCCCC
66 CGGCAGCAGAATCGGCAGCACGCATAGGGGGACCCACCTGATCCCCAACTTGCGCATCCCGCCCC
13347573 TCTGGCCGACTGAGCGCCCGCACACTCG
131 TCTGGCCGACTGAGCGCCCGCACACTCG
* * *
13347601 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGA-CTGAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GATC-GAGGGT
* * *
13347665 TACGGCAGCAGGATCGGCAGCACGCATA-GGGGACCCGACCT-ATCCCCGACTTGCTCATCCCGC
64 TACGGCAGCAGAATCGGCAGCACGCATAGGGGGACCC-ACCTGATCCCCAACTTGCGCATCCCGC
** * *
13347728 CCCTCTGGTTGACTGATCGCCCGCACGCTCG
128 CCCTCTGGCCGACTGAGCGCCCGCACACTCG
13347759 TT
1 TT
13347761 CATTCCCAGT
Statistics
Matches: 142, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
158 107 0.75
159 35 0.25
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.22
Consensus pattern (158 bp):
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGATCGAGGGTTA
CGGCAGCAGAATCGGCAGCACGCATAGGGGGACCCACCTGATCCCCAACTTGCGCATCCCGCCCC
TCTGGCCGACTGAGCGCCCGCACACTCG
Found at i:13352446 original size:878 final size:877
Alignment explanation
Indices: 13350457--13356564 Score: 7490
Period size: 877 Copynumber: 6.9 Consensus size: 877
13350447 GTGACGCCAA
* *
13350457 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA----GCGGGCGGGTGGGCAGGC
1 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGC
* * * *
13350518 ACTACATCGGCCAGAGTGACGGGATGCGCAAGCCGTGCATCGATAGTGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
13350583 CATATCTTCATAGTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
13350648 TAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCTTTTTCTATTTTTCATGATTTTTGAAACT
196 TAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTGAAACT
* * * * *
13350713 TTTTGCTGTTTGGGATTTTTTAAAATTTTTTCAGAAGGATTTTCGGCCCCAAACTTGGTAGACGT
261 TTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTAGACGT
* * * * *
13350778 GATCGTTGTTTTTTTGTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAACTGAACAAGATTT
326 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
13350843 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATA
391 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
13350908 AAATCTCAAATGCTCTTTAAGGGGGTGTGAG-TCTTCAAGGTTTGATGAGGGATAGGGGACCAAT
456 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT-GAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * * **
13350972 ATAAGGGCCAAGTGCCAGAACCAATTGCACATCATGTACGCACACCCCCCGGCTTCCCCGAAT-G
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG-ATCG
* * * * * * * *
13351036 CCGAAACCTCAATGTCGCTGCTCAAGCTCTCCGACGAGGCTCTTGCGATGGTGCCCCAGTGAAGA
584 CCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGAGGCTCTTGCGATGGTGCCCCGGTGAAGA
* * * * * *
13351101 AAAATGTGGCACCAACACAAGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGAT
649 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCTCGCAACCCTCGATCCGGTCTGAT
* * ** *
13351166 CTTAGACTGGGAATGAACTCTGCATGCCTAAGTCAACCCACGAAACAAATGTGCGGGTGCTCAGC
714 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * *
13351231 CGGCCAGTGGGGAAGGATGCACAAGTCGGGGATCGGCCGGCTCCCCCTCTACGTGCTGCCGATCC
779 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* *
13351296 TGCTACTGCAACCCTCAGTCCAGTCTAATCTTAG
844 TGCTGCCGCAACCCTCAGTCCAGTCTAATCTTAG
*
13351330 ACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGTGGGCGGGC
1 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGC
* *
13351395 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
13351460 CACATCTTCATAGTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
13351525 TAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCATGATTTTTGAAACT
196 TAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTGAAACT
* * *
13351590 TTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTAGTAGACAT
261 TTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTAGACGT
* * *
13351655 GATCCTTGTTTTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTT
326 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* ** * * *
13351720 TCTGACCATTTGAAAAAAGTGTTGCCATTTCAGACACATTAATGGCTA-TAGGTAGAAAACCTGT
391 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GGCAGCAAACCTGT
* **
13351784 AAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAATGGGCCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
*
13351849 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCACCCCGGCCCCCCCGAAT
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCCG-AT
* * * * *
13351914 -GCCGAAACCTCAATGCCGCTGCTCAAGCTCTCCGGCGAGGCTCTTGCGATGGTGCCCCGGTGAA
582 CGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGAGGCTCTTGCGATGGTGCCCCGGTGAA
* * * * *
13351978 GAAAAATGTGGCACCAACACATGCTCAAACCCAGAATGTGCTCTCGCAACCCTCGATCCGGTCTG
647 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCTCGCAACCCTCGATCCGGTCTG
* * *
13352043 ATCTTAGACTGGGAATGAACTCTGCATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCA
712 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * *
13352108 GCCGGCCAGAGGGGCGGGATGCATAAGTCGGGGATCGGTCAGGT-CCCCTCTATGTGCTGCCGAT
777 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGAT
* *
13352172 CTTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAG
842 CCTGCTGCCGCAACCCTCAGTCCAGTCTAATCTTAG
13352208 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGC
1 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGC
*
13352273 ACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
13352338 CACATCTTCATAGTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
13352403 TAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCACGATTTTTGAAACT
196 TAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTGAAACT
*
13352468 TTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAAGATTTTTGGCCCCAAACTTGGTAGACGT
261 TTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTAGACGT
* *
13352533 GATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTGCAAGATTT
326 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
** *
13352598 TGTGACCATTTGAAAAAAGTG-CCAAATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
391 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* ** *
13352662 AAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATA
456 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
*
13352727 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-CACACCCCCCCGGCCCCCTCGATCGC
521 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGC
* * * * * * *
13352791 CGGAACCCCAATGTCG-TCAGTCAGGTTCTCCGGTGAGTCTC-CGACGATGGTGCCCTGGCGAAG
585 CGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGAGGCTCTTG-CGATGGTGCCCCGGTGAAG
* * * *
13352854 AAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGC-CGCAACCCTCGGTCCGGTCCG
648 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-CTCGCAACCCTCGATCCGGTCTG
* * *
13352918 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCA
712 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
13352983 GCCGGCCAGAGGGGCGGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCATGTTGTCGAT
777 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGAT
* * *
13353048 CCTGTTGCTGCAACCCTC-GATCCAGTCTGATCTTAG
842 CCTGCTGCCGCAACCCTCAG-TCCAGTCTAATCTTAG
* * ** * * * **
13353084 ACTAGGAATGAACTCTGTATGCCTAAGTTAATCGACGAAACGAGCGGACGGGTGGACGGGCGGGC
1 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGC
* * * * * *
13353149 ATTATGCCGACTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
13353214 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC-
131 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * *
13353278 -GA-CCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACT
196 TAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTGAAACT
* ** * * * *
13353341 TTTTACGGTTCGAAATTTTTTAAAATTTTTTTGGAAGGA-GTTTGGCCCCAAACTTGGTAGACAT
261 TTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTAGACGT
* *
13353405 GATCCTTGTATTTTGGTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
326 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
13353470 TGTGACCATTTGAAAAACGTGTCCCCATTCCAGACACTTAAATGGCTACTGGCAGCAAACCTGTA
391 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
13353535 AAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
456 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * * **
13353600 TAAGGGCCAAGTACCAGCACCCATCGTACATCATATGTGCACAACCCCCGGCCCTCCCGATCATC
521 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
* * * * * * * * **
13353665 GAAACCCCAATGCCGCCGGTTAGGTTCTCCGGTGATGCTCTGGCGATGGTACCTCGACGAAGAAA
586 GGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGAGGCTCTTGCGATGGTGCCCCGGTGAAGAAA
** * * *
13353730 AATACGGCACCAGCACATGCCTGAGCCCAGCAAGTACTAC-CGCAACACTCGGTCTGATCTGATC
651 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-CTCGC-A-AC-C---C---TC-GATC
*
13353794 TTAGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCTGTAGGCCTAAGTCAACCCA
705 -----C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
* * * * * **
13353859 CAAAACGAGCGTGCGGGCGCTCGGCCGGCTAGAGGGGCGGGATGCGCAAGCCAGGGATTAGTCGG
754 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGG
* * * * ** *
13353924 GTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCACAACCTTCAGTCTGGTCTAACCTTAG
819 GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAGTCTAATCTTAG
* * *
13353983 ACTGGGAGTGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGACGGGC
1 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G-GG-TGGGC
** * * * *
13354048 GGGCACTACACCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGCAGGTTGGTT
62 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * *
13354113 TAGGTACAACTTGATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
127 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * **
13354178 CCCTTAAGCCTTCACATGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
192 CCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTGA
* * * * * **
13354243 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGTCCCCAAACTTTTTTA
257 AACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAAC-TTGGTA
*
13354308 GACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTCATG-TAAAAACTCGAAGTGTACA
321 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA-GCTAAAAACTCGAAGTGTACA
* *
13354372 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTATTGGCAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
13354437 CCTGTAAAATCTCTAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGG
450 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
* *
13354502 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCACACCCGGCCCTC
515 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-C-CCCGGCCCCC
* * * * *
13354567 CCGATCACCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGA------TGC--TGGTGCCTCG
577 CCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGAGGCTCTTGCGATGGTGCCCCG
* * * * **
13354624 GTGAAGAAAAATGCT-GCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTTGGCCC
642 GTGAAGAAAAATG-TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCTCGCAACCCTCGATCC
13354688 GGTCTGATCTTAGACTGGGAATGAACACCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAA
706 GGTCTGATCTTAGACT-GG---G------A-ATG---A-AC------T---CT--GTATGCCTAA
* * * * *
13354753 GTCAACCCATGAAACGAGCGTGCGAGCGCT-ATGGCGGCCAGAGGGACGGGATAG-GCAAGCCGG
745 GTCAACCCACGAAACGAGCGTGCGGGCGCTCA-GCCGGCCAGAGGGGCGGGAT-GCGCAAGTCGG
** * * * **
13354816 GGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCCT-ATCGCCGCAACCCTCAGTCCAGTCCGA
808 GGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-GCCGCAACCCTCAGTCCAGTCTAA
13354880 TCTTAG
872 TCTTAG
* * * * * *
13354886 ATTGGGAATGAACTCCATACGCC-AGAGCCAACCGACGAAACAAACAGGCGGGC----GGGCGGG
1 ACTGGGAATGAACTCCGTATGCCTA-AGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGG
*
13354946 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
65 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * **
13355011 GCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATTGCTTGTAAATTCATACAATCATCCC
130 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
13355076 TTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAAC
195 TTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTGAAAC
* * * * * *
13355141 TTTTTGCGGTTTGGGATTTTTGATAATTTTTT-TGAAAGGAGTTTTGGCCCCAAACTAGGTAGAC
260 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAA-GATTTTTGGCCCCAAACTTGGTAGAC
* *
13355205 GTGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGAT
324 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * * *
13355270 TTCGTGACCATTTGAAAAAAGTGTCCCCATTTCATACTCTTTAATGGCTACTGCCAGCAAACCTA
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
13355335 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
454 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
13355400 AATAAGGGCCAAGTACCAGCACCCATCGCACTTCATGTGCACACACCCCCCGGCCCCCCCGATCG
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * * * * ***
13355465 TCGGAACCCCAATGCTG-TCGGTCAGGTTCTCTGGTGATGCTCCAACGATGGTGCCCCGGTGAAG
584 CCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGAGGCTCTTGCGATGGTGCCCCGGTGAAG
** * * * *
13355529 AAAAATACGGCACCAGCACATGCCCAACCCCAGCATGTGCTATCGTAACCCTCGATCCAGTCCGA
648 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCTCGCAA----C---CC--T-CGA
* *
13355594 TCTTCGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACC
703 ---TC--C---G---G---TCTG-AT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * * * *
13355659 CACGAAACGAGCGTACAGGCGCTCAGCTGGCTAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTC
752 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTC
* * * * ** * * **
13355724 GGGTCCCCCTCTGCGTGCTGTCGATCCTGTTGTCATAACCCTCGGTCCGGTCCGATCTTAG
817 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAGTCTAATCTTAG
* * * * * *
13355785 ACTGGAAATGAACTCCGTATGCCTAAGCCAACCAAC-AAA--A-TGAGTGGAC----GGGCGGGC
1 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGC
* * * * *
13355842 ACTATGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAAGTGTGTTTAGG
66 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
13355907 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
13355972 TAAGACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTCTATTTTTCATGATTTTTGAAAC
196 TAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC-TTTTTCTATTTTTCATGATTTTTGAAAC
* * * * *
13356037 TTTTTACGGTTCGGGATTTTTTGAAACTTTTTACGGAAAGAGTTTTGG-CCCAAACATGGTAGAC
260 TTTTTACGGTTTGGGATTTTTT-AAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTAGAC
* *
13356101 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGAT
324 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
13356166 TTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACCTG
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
13356231 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAAGTTTGATGAGGGATAGGGGGCCAA
454 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
13356296 TATAAGGGCCAAATACCAGCACCCATTGCACATCATCTGCGCACACCCCCTGGCCCCCCCGATCG
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * ** **
13356361 CCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGA
584 CCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGAGGCTCTTGCGATGGTGCCCCGGTGAAGA
* * * * *
13356426 AAAATGTGACACTAGCACATGCTCGAGCCCAGCATGTGCTGT--C-A--CT--A--CGATCTGAT
649 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCTCGCAACCCTCGATCCGGTCTGAT
* * * * *
13356482 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGGGCTTAGC
714 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
13356547 CGGCCAGAGGGGCGGGAT
779 CGGCCAGAGGGGCGGGAT
13356565 ATGCAAGCCG
Statistics
Matches: 4585, Mismatches: 513, Indels: 286
0.85 0.10 0.05
Matches are distributed among these distances:
861 74 0.02
862 2 0.00
863 4 0.00
869 1 0.00
872 105 0.02
873 369 0.08
874 11 0.00
875 218 0.05
876 231 0.05
877 608 0.13
878 456 0.10
879 237 0.05
881 3 0.00
882 3 0.00
883 3 0.00
884 2 0.00
886 2 0.00
887 1 0.00
888 5 0.00
890 2 0.00
891 45 0.01
892 4 0.00
893 6 0.00
894 230 0.05
895 390 0.09
896 392 0.09
897 19 0.00
898 11 0.00
899 384 0.08
900 5 0.00
901 6 0.00
902 4 0.00
903 333 0.07
904 2 0.00
905 3 0.00
906 92 0.02
907 12 0.00
908 230 0.05
909 3 0.00
910 3 0.00
911 49 0.01
912 1 0.00
914 4 0.00
915 1 0.00
917 1 0.00
920 1 0.00
921 1 0.00
923 4 0.00
924 4 0.00
925 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (877 bp):
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGC
ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTGAAACT
TTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
GGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGAGGCTCTTGCGATGGTGCCCCGGTGAAGAAA
AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCTCGCAACCCTCGATCCGGTCTGATCT
TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTG
CTGCCGCAACCCTCAGTCCAGTCTAATCTTAG
Found at i:13354734 original size:26 final size:26
Alignment explanation
Indices: 13354696--13354748 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13354686 CCGGTCTGAT
*
13354696 CTTAGACTGGGAATGAACACCATATG
1 CTTAGACTAGGAATGAACACCATATG
* *
13354722 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCATATG
13354748 C
1 C
13354749 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCATATG
Found at i:13356082 original size:26 final size:27
Alignment explanation
Indices: 13356027--13356082 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
13356017 TTTTTCATGA
*** *
13356027 TTTTTGAAACTTTTTACGGTTCGGGAT
1 TTTTTGAAACTTTTTACGGAAAGAGAT
13356054 TTTTTGAAACTTTTTACGGAAAGAG-T
1 TTTTTGAAACTTTTTACGGAAAGAGAT
13356080 TTT
1 TTT
13356083 GGCCCAAACA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.23, C:0.09, G:0.20, T:0.48
Consensus pattern (27 bp):
TTTTTGAAACTTTTTACGGAAAGAGAT
Found at i:13356237 original size:896 final size:895
Alignment explanation
Indices: 13352045--13356465 Score: 5712
Period size: 899 Copynumber: 4.9 Consensus size: 895
13352035 CCGGTCTGAT
* * * * *
13352045 CTTAGACTGGGAATGAACTCTGCATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
** * * ** *
13352110 CGGCCAGAGGGGCGGGATGCATAAGTCGGGGATCGGTCAGGT-CCCCTCTATGTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
13352174 TGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGTTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
13352239 CCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAAC-AGCGAGCGGAC----GGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAA
*
13352304 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTCTGCATGCCAATGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
13352369 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13352434 GACTCTTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
386 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
13352499 CGAAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
451 CGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * ** *
13352564 AACTTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTG-CCAAATTTT
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
13352628 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
** *
13352693 TTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
646 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
13352758 CATGTGC-CACACCCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGTCGTCAGTCAGGTTCTCC
711 CATGTGCACACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
13352822 GGTGA-GTCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCA
775 GGTGATG-CTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
*
13352886 GCATGTGCTGCCGCAA-CC-C--TCG---G-TC-----C--GG--T---C-CG-AT-
839 GCATGTGCTACCGCAACCCTCGGTCGTCTGATCTTAGACTGGGAATGAACTCGTATG
*
13352920 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *
13352985 CGGCCAGAGGGGCGGGATGCGCAAGTC-AGGGATCGATCGGGTCCCCCTCTGCATGTTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
** * * **
13353049 CTGTTGCTGCAACCCTC-GATCCAGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTT
130 CTGTTGCCACAACCCTCAG-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
13353113 AATCGACGAAACGAGCGGACGGGTGGACGGGCGGGCATTATGCCGACTAGAGAGACGGGATGCAC
194 AACCGACGAAAC-AGC-GA---GCGGACGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGC
* *
13353178 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
13353243 CATTTTTATGGCTTGTAAATTCATACAATGGTCCC--GA-CCTTCACGTGAAGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * **
13353305 ATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAAATTTTTTAAAATTTT
384 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * *
13353370 TTTGGAAGGAG-TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTGGTTGGCATGAACAA
449 TTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
13353434 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
13353499 CCAGACACTTAAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13353564 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAC
644 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * *
13353629 ATCATATGTGCACA-A-CCCCCGGCCCTCCCGATCATCGAAACCCCAATGCCGCCGGTTAGGTTC
709 ATC--ATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * *
13353692 TCCGGTGATGCTCTGGCGATGGTACCTCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCC
772 TCCGGTGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
13353757 CAGCAAGTACTACCGCAACACTCGGTCTGATCTGATCTTAGACTGGGAATGAACTACGTATG
837 CAGCATGTGCTACCGCAACCCTCGGTC-G-TCTGATCTTAGACTGGGAATGAACT-CGTATG
* * * * *
13353819 CTTAGACTGGGAATGAACTCTGTAGGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * ** *
13353884 CGGCTAGAGGGGCGGGATGCGCAAG-CCAGGGATTAGTCGGGTCCCCCTCTGCGTGCTGCTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * * *
13353948 CTGCTGCCACAACCTTCAGTCTGGTCTAACCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCA
130 CTGTTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *** *
13354013 ACTGACGAAACGAGCGGGCGGGCGGGCGGACGGGCGGGCACTACACCGGCTAGAGAGACGGGATG
195 ACCGACGAAAC-A--------GCGAGCGGACGGGCGGGCACTATGTCGGCCAGAGAGACGGGATG
* * * * * *
13354078 CGCAAGCCATGGATCGATAGGGTGGCAGGTTGGTTTAGGTACAACTTGATATTTCTGCATGCCAA
251 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
13354143 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGC
316 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
** * *
13354208 AAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAAT
381 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * ** *
13354273 TTTTTCGGAAGGATTTTTGTCCCCAAACTTTTTTAGACGTGATCCTTGTATTTTTGTTGGCATGG
446 TTTTTCGGAAAGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
13354338 ACAAAAAAATTCATG-TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
510 ACAAAAAAATTCA-GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
13354402 CCATTTTAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCTAATGCTCTTTAAGGGG
574 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
13354467 GTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
639 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
13354532 TGCACATCATGTGCGCACACCCACACCCGGCCCTCCCGATCACCGGAACCCCAATGCCGCCGATC
704 CGCACATCATGTGCACACA-CC-C-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * * * *
13354597 AGGTTCTCC---GA-----CGATGCTGGTGCCTCGGTGAAGAAAAATGCTGCACCAGCACATGCC
766 AGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCC
* ** * * * * *
13354654 CGAGCCTAGCATGTGCTGTCGTAACCCTTGGCCCGGTCTGATCTTAGACTGGGAATGAACACCAT
831 CGAGCCCAGCATGTGCTACCGCAACCCTCGG-TC-GTCTGATCTTAGACTGGGAATGAAC-TCGT
13354719 ATG
893 ATG
* *
13354722 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GAGCGCT-AT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG-GCGCTCA-
* * * * * * *
13354785 GGCGGCCAGAGGGACGGGATAG-GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAA
64 GCCGGCCAGAGGGGCGGGAT-GCGCAAGTCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
* * * * * * *
13354849 TCCTATCGCCGCAACCCTCAGTCCAGTCCGATCTTAGATTGGGAATGAACTCCATACGCC-AGAG
128 TCCTGTTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA-AG
* * *
13354913 CCAACCGACGAAACAAAC-AGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
192 CCAACCGACGAAAC-AGCGA-GCGGACGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCA
* *
13354977 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* ** *
13355042 ATTTTTATTGCTTGTAAATTCATACAATCATCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
13355107 CGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTTGGGATTTTTGATAATTTTT
385 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
13355172 T-TGAAAGGAGTTTTGGCCCCAAACTAGGTAGACGTGATCCTTGTATTTTTGTTGACATGCACAA
450 TCGGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
13355236 AAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
13355301 TCATACTCTTTAATGGCTACTGCCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13355366 ACTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCAC
644 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
13355431 TTCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTC
709 ATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
13355496 TGGTGATGCTCCAACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAACCCCA
774 CGGTGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
13355561 GCATGTGCTATCGTAACCCTCGATCCAGTCCGATCTTCGACTAGGAATGAACTCTGTATG
839 GCATGTGCTACCGCAACCCTCGGT-C-GTCTGATCTTAGACTGGGAATGAACTC-GTATG
* *
13355621 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTACAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * *
13355686 TGGCTAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
13355751 TGTTGTCATAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAA
131 TGTTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13355816 CCAAC-AAA-A-TGAGTGGACGGGCGGGCACTATGTCAGCCAGAGAGACGGGATGCGCAAGCCGT
196 CCGACGAAACAGCGAGCGGACGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * * *
13355878 GGATCGATAGGGTGGCAAGTGTGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
261 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
13355943 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACGACTC
326 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
13356008 GTTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTGAAACTTTTTACGG
391 G-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGG
*
13356073 AAAGAGTTTTGG-CCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
454 AAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
13356137 ATCAGCTAAAAACTCAAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
13356202 CTCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
13356267 TTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATCAT
649 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
13356332 CTGCGCACACCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGGCG
714 GTGCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTG
* * * * * *
13356397 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGACACTAGCACATGCTCGAGCCCAGCATG
779 ATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
13356462 TGCT
844 TGCT
13356466 GTCACTACGA
Statistics
Matches: 3074, Mismatches: 385, Indels: 153
0.85 0.11 0.04
Matches are distributed among these distances:
872 104 0.03
873 328 0.11
874 3 0.00
875 104 0.03
876 215 0.07
877 3 0.00
878 1 0.00
880 4 0.00
882 1 0.00
883 2 0.00
888 1 0.00
890 2 0.00
891 42 0.01
892 2 0.00
893 3 0.00
894 231 0.08
895 397 0.13
896 392 0.13
897 18 0.01
898 12 0.00
899 432 0.14
900 4 0.00
902 2 0.00
903 382 0.12
904 4 0.00
905 1 0.00
906 99 0.03
907 15 0.00
908 222 0.07
909 2 0.00
910 1 0.00
911 45 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGTTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACAGCGAGCGGACGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
AGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
GCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTACCGCAACCCTCGGTCGTCTGATCTTAGACTGGGAATGAACTCGTATG
Found at i:13358610 original size:876 final size:881
Alignment explanation
Indices: 13357084--13358680 Score: 2490
Period size: 876 Copynumber: 1.8 Consensus size: 881
13357074 GATATTAGAC
* *
13357084 TGGGAATGAACTCCGTATGCCTAAATCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAG
** *
13357149 AGGGGCAGGATGCTCAAGCCGAGGATCGACCGAGTCCCCCTCTACATGCTACCGATCCTACTATC
66 AGGGGCAGGATGAGCAAGCCGAGGATCGACCGAGTCCCCCTCTACATGCTACCGATCCTACTACC
* *
13357214 GCAACCCTCAGTCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA
131 GCAACCCTCAGTCCGGTCTAATATTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACAA
*
13357279 AATGAGCGGGCGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGGATACGCAAGCCGTGGATC
196 AA-GAGCGAGCGGGCA-G-AGGCACTACGCCGGCCAGAGAGACGGGGATACGCAAGCCGTGGATC
* ** **
13357344 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTACTTT
258 GATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTACTGG
* *
13357409 CTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
323 CTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** * *
13357474 CTATTTTTCACGATTTTTGAAACTTTTTGCGCTTTGGGATTTTTTAAAATTTTTTTGAAAGGATT
388 CTATTTTTCACGATTTTCAAAACTTTTTGCGCTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGT
* * * *
13357539 TTTGGGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCACAAAAAAATTTAGCTA
453 TTTGGCCCAAACTTGGTAGACATGATCCTTGTATTTTGGCTGGCATGCACAAAAAAATTCAGCTA
*
13357604 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
518 AAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
13357669 CGACTGCTGGCAGCAAAACAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
583 CGACTACTGGCAGCAAAACAGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTT
* *
13357734 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
648 TGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCCCAC
13357799 ACCCCCTAGCCCCCCCGATCGTCAGAACCCCAATACCGCCGGTCAGGTTTTCCGGCGATGCTCCG
713 ACCCCCTAGCCCCCCCGATCGTCAGAACCCCAATACCGCCGGTCAGGTTTTCCGGCGATGCTCCG
13357864 GTGATGGTGCCCCGATGAAGAAAAATGCCCGAGCCCAGCATCTGCTGTCGCAACCCTAGGTTTGA
778 GTGATGGTGCCCCGATGAAGAAAAATGCCCGAGCCCAGCATCTGCTGTCGCAACCCTAGGTTTGA
13357929 TCCGATCTTAGACTGGGAATGAACTCCTTATGCTTAAAT
843 TCCGATCTTAGACTGGGAATGAACTCCTTATGCTTAAAT
* * * *
13357968 TGGGAATGAACTTCTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTTGCTCAACCGGCCAG
1 TGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAG
* * * * * * ** *
13358033 AGGGGCGGGTTGAGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACC
66 AGGGGCAGGATGAGCAAGCCGAGGATCGACCGAGTCCCCCTCTACATGCTACCGATCCTACTACC
* * * * *
13358098 TCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAGAACCGAC-G
131 GCAACCCTCAGTCCGGTCTAATATTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACAA
* *
13358162 AA-A-CGAGCGGGC-G-GGCACTACGTCGGCCAGAGAGAC-GGGATGCGCAAGCCGTGGATCGAT
196 AAGAGCGAGCGGGCAGAGGCACTACGCCGGCCAGAGAGACGGGGATACGCAAGCCGTGGATCGAT
* *
13358222 AGGGTGATAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTA-TGGCTT
261 AGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTACTGGC-T
* *
13358286 GTAAATTCATACAATAGTCCTTTAAGCCTTCACGTGAAGTTTGATGGCAAGACGACTCGTTTTCT
325 GTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
13358351 ATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
390 ATTTTTCACGATTTTCAAAACTTTTTGCGCTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
* *
13358416 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTGGTTGGCCTGCACAAAAAAATTCAG-TGA
455 TGG-CCCAAACTTGGTAGACATGATCCTTGTATTTTGGCTGGCATGCACAAAAAAATTCAGCT-A
*
13358480 AAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTTAGACACTTTAA
518 AAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * * * * * *
13358545 TGGCTACTGGCAGCAAACCTGTAAAGTCTCAAGTGGTCTTCAAGGGGGTGTGAGTTCTTGAGGTT
583 CGACTACTGGCAGCAAAACAGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTT
13358610 TGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCCCAC
648 TGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCCCAC
13358675 ACCCCC
713 ACCCCC
13358681 CGATCCTGCT
Statistics
Matches: 644, Mismatches: 66, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
874 2 0.00
875 200 0.31
876 261 0.41
878 1 0.00
880 8 0.01
881 1 0.00
883 2 0.00
884 169 0.26
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (881 bp):
TGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAG
AGGGGCAGGATGAGCAAGCCGAGGATCGACCGAGTCCCCCTCTACATGCTACCGATCCTACTACC
GCAACCCTCAGTCCGGTCTAATATTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACAA
AAGAGCGAGCGGGCAGAGGCACTACGCCGGCCAGAGAGACGGGGATACGCAAGCCGTGGATCGAT
AGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTACTGGCTG
TAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTCAAAACTTTTTGCGCTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
GGCCCAAACTTGGTAGACATGATCCTTGTATTTTGGCTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAACGA
CTACTGGCAGCAAAACAGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCCCACACC
CCCTAGCCCCCCCGATCGTCAGAACCCCAATACCGCCGGTCAGGTTTTCCGGCGATGCTCCGGTG
ATGGTGCCCCGATGAAGAAAAATGCCCGAGCCCAGCATCTGCTGTCGCAACCCTAGGTTTGATCC
GATCTTAGACTGGGAATGAACTCCTTATGCTTAAAT
Found at i:13360382 original size:25 final size:26
Alignment explanation
Indices: 13360348--13360399 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
13360338 CCGGTCCGAT
13360348 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
13360373 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13360399 C
1 C
13360400 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13360821 original size:913 final size:909
Alignment explanation
Indices: 13358680--13362862 Score: 4307
Period size: 913 Copynumber: 4.7 Consensus size: 909
13358670 CCCACACCCC
* *
13358680 CCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCT
1 CCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
13358745 AAGCCAACCGACGAAATGA--GTG--GGCGGGCAGGTAGGCACTACATCGGCCAGAGAGACGGGG
66 AAGCCAACCGACGAAACGAGCGGGCAGGCGGGC-GGCAGGCACTACGTCGGCCAGAGAGAC-GGG
*
13358806 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTACGTGC
129 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
* ** *
13358871 GAATGCCATTTTTACTTTC-TGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCA
194 CAATGCCATTTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
13358935 TGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTCAAGATTTTTTA
258 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTA
* * *
13359000 AAATTTTTTCGAAAA-AATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
323 AAATTTTTTC-AAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGC
* *
13359064 ATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTG
387 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
13359129 TCCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
452 TCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
13359194 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
517 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
13359259 CATCGCACATCATGTGCGCACACCCCCCAG-CCCCTCGATCGTCGGAACCCCAATGCAGTCGGTC
582 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGAAAACCCAATGCAGTCAGTC
* * *
13359323 AGG---TT--AT-C-T-GGCGACGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAG
647 AGGTTCTTGGATGCTTCGGCGATGCTCCGACGATGGTG-CCCGACGAAGAAAAATGCGGCACCAA
* * * * ** * *
13359380 CACAAGCCCGAGCCCAGCATGTGCTAACGCAACCCTCAGTTTGGTCTGATATTAGACTGGGGATG
711 CACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
*
13359445 AACCTCCGTATTGCTTAGACTGGGAAATGAACTCCGTATGCCTAAGTCCAACCGC-CGAAACGAG
776 AA-CTCCGTA-TGCTTAGACTGGG-AATGAACTCCGTATGCCTAAGT-CAACC-CATGAAACGAG
* * * * * * * *
13359509 CTTGTGGGCGGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCTGGGGATCGACCGAGTCCACCT
836 CGTGT-GGCTGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCT
13359574 CTGCGTGCTG
900 CTGCGTGCTG
* * * * * *
13359584 TCGATCCTACTACCGTAACCCTCAGTCTGGTC-AATCTTAGACTGGCAATGAACTCCGTATGCCT
1 CCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
13359648 AAGCCAACCAACGAAACGAGCAGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
66 AAGCCAACCGACGAAACGAGCGGGCAGGCGGGC-GGCAGGCACTACGTCGGCCAGAGAGACGGGA
* *
13359713 TCCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCC
130 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
* * *
13359778 AATGCCATTTTTATGGCTTGTAAATTCGTATAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATG
195 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
13359843 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GAGATTTTTTAA
260 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAA
*
13359907 AATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
324 AATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCAT
* *
13359972 GCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTC
389 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
13360037 CCCATTTCAGACAGTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
454 CCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
13360102 GGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCTAATATAAGGGCCAAGTACCAGCACCC
519 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-AATATAAGGGCCAAGTACCAGCACCC
* * * *
13360166 ATCGCACATCATGTGCGCACACCCCTCGGCCCCCTCGATCGTCGAAAACCCAATGCTGTCACTTA
583 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGAAAACCCAATGCAGTCAGTCA
**
13360231 GGTTCTCTGACGATGCTTCGGCGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATATGGCACC
648 GGTTCT-TG--GATGCTTCGGCGATGCTCCGACGATGGTGCC-CGACGAAGAAAAATGCGGCACC
* * ** *
13360296 AACACTTGCTCGAGCCTAGCATGTGCTACCGCAATGCTCGGTCCGGTCCGATCTTAGACTGGGAA
709 AACACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
*
13360361 TGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGATCGT
774 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
* *
13360425 GTGGCTGCTCAGCAGGCCAGAAGGGCGGGATGTGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGC
839 GTGGCTGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGC
*
13360490 ATGCTG
904 GTGCTG
* * * *
13360496 CCGATCCTGCTGTCGTAACCCT-TGATCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCC
1 CCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
13360560 TAAGCCAACCGATGAAACGAGCGGGCAGGCGGGCGGACAGGCACTACGTCGGCCAGAGAGATGAG
65 TAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGG-CAGGCACTACGTCGGCCAGAGAGACGGG
* *
13360625 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTAC
129 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
13360690 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
194 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
*
13360755 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAA
259 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAA
**
13360820 AATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCAT
324 AATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCAT
* * * *
13360885 GCACAAAAAAATTCAGCTAGAAACTCGAGGTGTACAAGATTTTGCGACCATTTGAAAAAAATGTC
389 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
13360950 CCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
454 CCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
13361015 GGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCA
519 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * **
13361080 TCGCACATCGTGTGCGCACACCCCCCGGCCCCCTCAATCATC-TAAACCCAATGCCGTTTGTCAG
584 TCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGAAAACCCAATGCAGTCAGTCAG
* * *
13361144 GTTCTTCGGTGATGCTCCGGCGATGCTCCGGCGATGGTGCCAGAGCGAAGAAAAATGCGGCACCA
649 GTTCTT--G-GATGCTTCGGCGATGCTCCGACGATGGTGCCCGA-CGAAGAAAAATGCGGCACCA
* * * * *
13361209 ACACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCTGATCTTATACTGGGACT
710 ACACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* * *
13361274 GAACTCCGTATGCTTAGACTGGGAATTAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTA
775 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
* * * * * * **
13361339 CGGGTGCTCAGCGGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCTCTCTATG
840 TGGCTGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCG
*
13361404 TGCTA
905 TGCTG
* * *** * ** * **
13361409 CCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTACGCAGGC--AGGC-GGGCGGGCAGGCGGGCG
1 CCGATCCTGCTGCCGCAACCCTCAGTCTGGTCT--G-A-TCTTAGACTGGGAATGAACTC-CGTA
* * * *** * * * **
13361471 GGCACT-A---AACCGACCAAA-GAGACGGG-ATGCGCAAGTC-GTGGA-T-CGATAGG-GTG-G
61 TGC-CTAAGCCAACCGACGAAACGAG-CGGGCAGGCGGGCGGCAG-GCACTACG-TCGGCCAGAG
** * * * * ** * *** * *
13361525 TAGGTGGGCTTACGCACA-TC-T---TC-ATA--TTTCT-GCAT--GCCAATGC-CATTTTCATG
122 -AGACGGG-ATGCGCA-AGCCGTGGATCGATAGGGTGGTAG-GTGGGTTTAGGCACATCTTCAT-
** * ** * * * * * * * **
13361578 GCTTGTAAATTCATACAATGGTCC---CTTAAGCCTTCACGTGAAGTTTCATGGCAA-GATGACT
182 ATTTCTACGTGC---CAAT-G-CCATTTTTATGGCTT---GT-AA-ATTCAT-ACAATGGTCCCT
** ** * **** ** **** * * *
13361639 T--G--TTGTC-T-ATTTTTCA-CG-ATTTTTGAAAC-TTTT-TGCGGTTCAGGATTTTTTAAAA
236 TAAGCCTTCACGTGAAGTTTCATGGCA-AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
13361694 TTTTTTCGG--AAGGA-GTTTTG----------------------GG-CCCAAGCTTGGTAGACG
300 TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACG
* * * *
13361733 TGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTTGAAGTGTACAAGATT
365 TGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
13361798 TTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
430 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGT
*
13361863 AAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
495 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
13361928 ATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCCCAAACCCCCCTGGCCCCCCCGATCA
560 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCTCGATCG
* * * * * * *
13361993 CCGGAACCCCAATGCCGTCGGTCAGGTTC-----T-C--CGGTGATGCTCCGACGATGATGCCCG
624 TCGAAAACCCAATGCAGTCAGTCAGGTTCTTGGATGCTTCGGCGATGCTCCGACGATGGTGCCCG
** * ** * * * * * *
13362050 AGCCCAG-CATGTGCTGC-CACAAC-C---CTCG-G-TC--C--G-G-T-CCG--ATCTTAGAT-
689 A-CGAAGAAAAATGCGGCAC-CAACACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
* * * ** * * *
13362097 TGG---GA-ATGA-ACTCCGTATG--CT---TA-GAC-T-G---GG-AATGAACTTCGTATGCGT
752 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATG-CTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
13362145 AAGTCAAACCACGAAACAAGCATGCGGGC-GCTCAGCTGGCCAGAGGGGCGGGATGCACAAG-TC
816 AAGTCAACCCATGAAACGAGCGTG-TGGCTGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCT-
* *
13362208 AGGGATCGACCGGGTCCCCCTCTGCGTGCTG
879 GGGGATCGGCCGGGTCCCCCTCTGCGTGCTG
* * ** *
13362239 GCGATCCTGCTGCCACAACCCTTGGT-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
1 CCGATCCTGCTGCCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * *
13362303 TAAGCCAACTGACGAAACGAGTGGGCGGGTGGGTTGGCGGGCACTACGCCGGCCAGAGAGACGGG
65 TAAGCCAACCGACGAAACGAGCGGGCAGGCGGG-CGGCAGGCACTACGTCGGCCAGAGAGACGGG
* * **
13362368 ATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTATAGGCACATCTTCATATTTCTGTGTGC
129 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
* * * *
13362433 CATTGCCATTTTTATAGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAACTTTCAT
194 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
** * * *
13362498 GGCAAGTTGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCAGGATTTTTTAA
259 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAA
** * * *
13362563 AATTTTTTCGGAAGGATTTTAGGCCCCAAACTTGGTAGACATGATCCTTTTA-TTTTCTTGGCAT
324 AATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCAT
* *
13362627 GCACAAAAAAATTCAGCTAAAAACGCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTC
389 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * *
13362692 CTCGTTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
454 CCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
13362757 GGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
519 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
13362822 TAGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
584 TCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTCGATCG
13362863 CCGGAACCCC
Statistics
Matches: 2732, Mismatches: 414, Indels: 300
0.79 0.12 0.09
Matches are distributed among these distances:
826 1 0.00
827 3 0.00
828 8 0.00
829 7 0.00
830 113 0.04
831 16 0.01
832 5 0.00
833 5 0.00
834 10 0.00
835 14 0.01
836 14 0.01
837 2 0.00
838 7 0.00
839 6 0.00
840 6 0.00
841 16 0.01
842 9 0.00
843 17 0.01
844 13 0.00
845 22 0.01
846 1 0.00
847 9 0.00
848 4 0.00
849 2 0.00
850 1 0.00
851 1 0.00
852 1 0.00
854 1 0.00
856 1 0.00
857 1 0.00
858 4 0.00
861 2 0.00
862 10 0.00
863 27 0.01
865 1 0.00
866 1 0.00
870 226 0.08
871 31 0.01
872 243 0.09
873 15 0.01
874 22 0.01
895 4 0.00
896 4 0.00
898 23 0.01
899 13 0.00
900 14 0.01
901 7 0.00
902 11 0.00
903 53 0.02
904 31 0.01
905 20 0.01
906 445 0.16
907 72 0.03
908 12 0.00
909 11 0.00
910 5 0.00
911 13 0.00
912 230 0.08
913 700 0.26
914 36 0.01
915 22 0.01
916 6 0.00
917 8 0.00
918 94 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (909 bp):
CCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGCAGGCACTACGTCGGCCAGAGAGACGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAA
TTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGAAAACCCAATGCAGTCAGTCAGGT
TCTTGGATGCTTCGGCGATGCTCCGACGATGGTGCCCGACGAAGAAAAATGCGGCACCAACACAT
GCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGCTG
CTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG
Found at i:13361170 original size:11 final size:11
Alignment explanation
Indices: 13361154--13361179 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13361144 GTTCTTCGGT
13361154 GATGCTCCGGC
1 GATGCTCCGGC
13361165 GATGCTCCGGC
1 GATGCTCCGGC
13361176 GATG
1 GATG
13361180 GTGCCAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.12, C:0.31, G:0.38, T:0.19
Consensus pattern (11 bp):
GATGCTCCGGC
Found at i:13361289 original size:26 final size:26
Alignment explanation
Indices: 13361260--13361309 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
13361250 CCGATCTGAT
* *
13361260 CTTATACTGGGACTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13361286 CTTAGACTGGGAATTAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
13361310 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13361464 original size:12 final size:12
Alignment explanation
Indices: 13361447--13361474 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
13361437 GGTCTACGCA
13361447 GGCAGGCGGGCG
1 GGCAGGCGGGCG
13361459 GGCAGGCGGGCG
1 GGCAGGCGGGCG
13361471 GGCA
1 GGCA
13361475 CTAAACCGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.11, C:0.25, G:0.64, T:0.00
Consensus pattern (12 bp):
GGCAGGCGGGCG
Found at i:13362119 original size:26 final size:26
Alignment explanation
Indices: 13362090--13362142 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13362080 CCGGTCCGAT
*
13362090 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13362116 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13362142 C
1 C
13362143 GTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13364629 original size:26 final size:26
Alignment explanation
Indices: 13364590--13364643 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
13364580 TGGGTTGACT
*
13364590 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
13364616 TAGGCATACAGAGTTCATTCTCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
13364642 TA
1 TA
13364644 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:13364767 original size:903 final size:899
Alignment explanation
Indices: 13362875--13369066 Score: 4912
Period size: 903 Copynumber: 6.9 Consensus size: 899
13362865 GGAACCCCAA
* * *
13362875 GCTCGGGCATGTGTTGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGACGGA
1 GCTCGAGCATGTGTTGGTG-CAGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGA
* * * * * * *
13362939 GAACCTGACCGACGACATTGGTGTTCCGGCAATCGAGGGTGGCCGGGGGGGGTGTACACACATGA
65 GAACCTGACCGGCGACATTGGGGTTCCGACGATCG-GGGGGGCC-AGGGGGGTGTGCACACATGA
*
13363004 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
128 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
*
13363069 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
193 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
13363134 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAAATTT
258 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTT
* * *
13363199 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCAA
323 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAA
* * * *
13363264 AAAAATTTTAAAAAATCCCCAACAACAAAAA-TTTTGAAAAGCATGAAAAATAAAAAACGAGTCA
388 AAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCA
13363328 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
453 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
13363393 GGCATTGGAACA-G-AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
518 GGCATTGG--CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
13363456 CTTGCGTATCCCATCTCTCTGGCCGACG-ATGTGCCCGCCCAACCGCCCGCCCGCTCGTTTAGTC
581 CTTGCGCATCCCGTCTCTCTGGCCGACGTA-GTGCCCGCCCAACCGCCCGCCCGCTCGTTTCGTC
*
13363520 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAG
645 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAG
* * *
13363585 CAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
710 CAGGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
13363650 CGGCTGCA-CATCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAATAT
775 CGGCTG-AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-T
* * *
13363714 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTG
838 -AGCATACAGAGTTCATT-CCAGTCTAAGATCAGAC--GACCGAGGGTTACGACAGCACATGCTG
13363779 G
899 G
* * *** *
13363780 GCTCGAGTATGTGTTGGTGTAGCATTTTTCTTCGTTTGGGCACCATCAACGGAGCATCGTCC--A
1 GCTCGAGCATGTGTTGGTGCAGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCG-CCGGA
* * * *
13363843 GAACCCGACTGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATG
65 GAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCACACATGATG
* * *
13363908 TCCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTC
130 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
13363973 ACACCCCTTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTGA
195 ACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
13364038 AATGGGGACACTTTTTTTAAATGGCCACAAAATCTTGTACACTGCGAGTTTTTACCTGAAATTTT
259 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
* * * **
13364103 TTATGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCCTTCTGAA
324 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
* * * *
13364168 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTG-AAAATAGAAAACGAGTCGT
389 AAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCAT
* **
13364232 CTTGCCATGAAACTGT-ACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGAAATAAAAAT
454 CTTGCCATGAAACT-TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
13364296 GACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGTTCCACGGCT
518 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *** ** * *
13364361 TGTGCATCCCGTCTCTCCGGCCGGCGTAGTGCTTACCCGCCCGCCCTCCCGCTCGTTTCGTCGAT
583 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCAACCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * * *
13364426 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCCGACCGAGGGTTACGACAGGAA
648 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAG
* * *
13364491 GATCGGCACCATGCGGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
713 GATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
13364556 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGC
778 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-TA-GC
* * *
13364621 ATACAGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGCAACAGCACATGTTGG
841 ATACAGAGTTCATTC-CAGTCTAAGATCAGA-C-GACCGAGGGTTACGACAGCACATGCTGG
* *
13364683 G-TCGGGCATGTGTTGGTGCCA-CATTTTTCTTCGCCGGGGTACCATCACCGGAGCATCGCCGGA
1 GCTCGAGCATGTGTTGGTG-CAGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGA
* * *
13364746 GAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATG
65 GAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCACACATGATG
*
13364811 TGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
130 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
13364876 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
195 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-A
*
13364941 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
259 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
*** *
13365006 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTTTCCAAAACTCCTTCCAAA
324 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
** **** * **
13365071 AAAATTAAAAAAAATGTTTAACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCAT
389 AAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCAT
*
13365136 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
454 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
13365201 GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCAT
519 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * *
13365266 GCATATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCAATCGCCCGCCCGCTCGTTTCGCCGGTT
584 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCAACCGCCCGCCCGCTCGTTTCGTCGGTT
** ** * *
13365331 GGCTTAGGCATATGGAGTTTGTTCCTAGTCTAGGATCAGACCGGACCAAGGGTTGCGGCAGCAGG
649 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGG
* * * * ** *
13365396 ATTGGTAGGATGCAAAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGC
714 ATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
13365461 TGAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAG-T--C-T-
779 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTAGCATA
* * * * *
13365521 -A-AG--------A-TC--AGA-CTG--GACTGATGGTTTCGACGGCACATGCTGG
844 CAGAGTTCATTCCAGTCTAAGATCAGACGACCGAGGGTTACGACAGCACATGCTGG
* * * **
13365561 GCTCGAGCCTGTGTTGGTGCAGCATTTTTCTTCATCC-GAGCACCATCGTCGGAGCATCGCCGGA
1 GCTCGAGCATGTGTTGGTGCAGCATTTTTCTTC-GCCGGGGCACCATCACCGGAGCATCGCCGGA
** * * * * *
13365625 GAAAATGACCAGCGGCATTGGGGTTCTGACGATC-GGGGGG--ATGGGGGTGTGCTCACATGATG
65 GAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCACACATGATG
*
13365687 TGCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
130 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
13365752 ACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAA
195 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
13365817 ATGGGGGCACTTTTTTGAAATGGTCACAAAATCATGTACACTTTGAGTTTTTAGCTGAATTTTTT
260 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTT
*
13365882 TGTGCATGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
325 TGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
* * *
13365946 AAAAGTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG-CTG
389 AAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTC-A
13366010 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
453 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
13366075 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGACT
518 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** * ** *
13366140 TGCGCATCCCGTCTCTTTGGTCGGTGTAGTGCCTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGT
583 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCAACCGCCCGCCCGCTCGTTTCGTCGGT
* * ** *
13366205 TGGCTTAGGCATACAGAGTTCATTCCCAGTCAAAGATCAGACCAGACTGAGGGTTGCGGTAGCA-
648 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAG
* * * ** ** ***** ** *
13366269 CAT-GTTG-GGCATGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGG---G-GCA--CC-ATCG
713 GATCG--GCAGCAT--GCA-GAGGGGGACCCG-GCCGATC--C-CCGGCTTGCGCATCCCGCCCC
* * * * * * ** **
13366325 TC-GGATCATCGTCGGAGAACCTG-AC-CGACGACATT-G-GGGTTCCGACGATCGGGGGGGCCG
769 TCTGG--C--CGGCTGAGCACCCGCACGC-TCG--TTTCGTGGGTT--GAC--T----TAGGCAT
* * * * ** * * ** * ** * * * * * ** *
13366385 ACGGGGTGTGC--GCACATGATATGCGAT-GGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCT
819 ACGGAGT-T-CATTCCCA-GTTA-GC-ATACAGAGTTCATTC-CAG-TCTAAGATCAGACGACCG
*** * *
13366446 ATCCCTTAC--CA-AACCT-C-GAG
877 A-GGGTTACGACAGCACATGCTG-G
* **** * * * * * * *
13366466 AACTC-A-CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCACTAAAGT
1 -GCTCGAGCA-TGTGTT--GGTGCA---G-CATTTTTC----TT-C-GCC-G-GGGCAC--CA-T
** * * * * * * ** * *** * * **
13366529 -GTCTGA-AATAG--GGA-CACTTTTTTCAAATGGTC-ACAAAATCTTGTACACTTTGA-GTTTT
47 CACCGGAGCATCGCCGGAGAAC----CT-GACCGG-CGAC--ATTGGGGTTC-C---GACGATCG
** ** * ****** * * ** * * * *** *
13366587 TAGCTG-AATTTTTTTATGCAAGCCAACA-AAAAT-AGAAGGAT-C-ACAAC-T-G-CC-AAGT-
100 GGGGGGCCAGGGGGGTGTGC-A--C-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA-TA
* *** * ** ** * * * ** * * * *
13366642 TTGGGTCCAAAACTCCATTCGAAAAAAGTTTAAAAAATC-C-CGAACCGTAAAAAG-TTTTGAAA
160 TT-GGCCCCCTA-TCC-CTC-ATCAAACCTCAAGAACTCACAC-CCCCTTAAAGAGCATTTG-AG
* * *** * * ** * * * * * *
13366704 ATCGTGA-AAAATAGAAAATCAGTCGTGTTGCCATGAAACT-TCACGTGAAGGCTTAAGGGCCA-
219 AT-TTTACAGGTTTG-----CTG-CCAGTAGCCATTAAAGTGT--C-TGAA---AT-GGGGACAC
* * * * * *** * ** * * * * * *
13366766 TTGTAT-GAAT--TTAC--AAGC-CAAAAAAAT-G-G-TATTGGCATGTAGA-GTTATGAAG-AT
270 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TG-AAATTTTTTG-TGCA-
* ** * * ** * * * * * * *** *
13366820 GTGCCTA-AAGCACACTACCA-CCCTATCGATCCACGGCTT-GTG-CATCCCATCTCTCTGGCCG
331 -TGCCAACAAAAATACAAGGATCAC-GTCTA-CCA-AGTTTGGGGCCA-AAAATC-CT-T--CCA
**** * ** ***** * **** * ** * * *** ** * *
13366881 GCGTAGTGCCCGT-CCGCCTGCCC--GCC-C-GTTCGTTTCGTCAGTTG-GCTTAAGCATACA-G
387 AAAAAAT---TTTAAAAAAT-CCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACG
* * *
13366939 AGT--TCATTCCCA-G-----T--C-T-AA-GATCT----GACCATTGTATGAATTTACAAGCGA
448 AGTCATC-TTGCCATGAAACTTCACGTGAAGGCT-TAAGGGACCATTGTATGAATTTACAAGCCA
* * * * *
13366987 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAATCCCACCTGCCACCCTATCGATC
511 TAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * * *
13367052 CACGGCTTGCGTATCCTGCCTCTCAGGCCAAC-TAGTGCCCG--C--CCGCCCACCAGCTTGTTT
576 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCAACCGCCCGCCCGCTCGTTT
* ** * * * ** *
13367112 CATCGGTTGGCTTAGGCATATGGAGTTCATTTCGAGTCTAAGATCGGACCAAACTGAA-GGTTGC
641 CGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-CAAGGGTTGC
** ** * * * * * *
13367176 GATAGCAGGATCGATAGCACGCAGAGGGGGACCCGACTGATCCTCGGCTTGGGCATCCAGCCCCT
705 GGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * *
13367241 CTAGTCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
770 CTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* **
13367306 G-T--C-T--A-AG-T--TT---G-----GA-CTG--GACCGAGGGTTACGGTAGCACATGCTGG
835 GTTAGCATACAGAGTTCATTCCAGTCTAAGATCAGACGACCGAGGGTTACGACAGCACATGCTGG
* * * *
13367350 GCTCGAGCATGTGCTGGTGCCA-CATTTTTCTTCGCCGGGGCACCATCGCTGGAGCATCGCCGAA
1 GCTCGAGCATGTGTTGGTG-CAGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGA
* * * * * *
13367414 GAACCTGGCCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGAGGGGCGTGTGCGCACATGAT
65 GAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGGTGTGCACACATGAT
* * * *
13367479 GTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCACTTATCAAACCTCGAGAACT
129 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
13367544 CACA-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
194 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * * * *
13367608 AATGGGCACACTATTTTCAAGTGTTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAATTTTT
259 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
* * * * **
13367673 TTTTGCATGCCAACAAAAATACAAGGATCACATCAACCAAGTTTGGGGCCAAAACTCCGACCAAA
324 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
* *** ** *
13367738 AAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGT-GT
389 AAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCAT
*
13367802 CTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
454 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
13367867 GCATTTGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
519 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
13367932 GCGTATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGTCCACC-CTTCCGCCTGCTCGTTTCAT
584 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC--CAACCGC--CCGCCCGCTCGTTTCGT
* * * * * * * *
13367996 CGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTATGATCAAACCAGATCGAGGGTTACGGCA
644 CGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCA
* * * * *
13368061 GCAGGATGGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCTGCTTGTGCATCCCGCCCTTCTGG
709 GCAGGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
** *
13368126 CCGGCTGAGTGCCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTAT
774 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-T
* * * * * * *
13368191 AAGCATACGGAGTTCATTCCCAGTCTAAGGTCGGATCAGATCGAGGGTTGA-GGCAGAACATACT
838 -AGCATACAGAGTTCATT-CCAGTCTAAGATCAGA-C-GACCGAGGGTT-ACGACAGCACATGCT
13368255 GG
898 GG
* * * * * * * * *
13368257 GCTAGGGCTTGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCAGAG
1 GCTCGAGCATGTGTTGGTGCAGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGAG
* *
13368322 AACCTGACCGGCGACATTGGGGTTCCGACAATCGGGGGGGCC-GAGGGGGTGTGCGCACATGATG
66 AACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAG-GGGGGTGTGCACACATGATG
* **
13368386 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTTGAGAACTC
130 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
13368451 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCACTAAAGTGTCTGAA
195 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
13368516 ATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
260 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTT
* * * *
13368581 TGTGCATGCCAAAAAAAATACAAGGATCATGACTACCAAGTTTGGGGCCAAAAATCCTACCAAAA
325 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* * ** * * **
13368646 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTCTGAAAATCGTGAAAAATAGAAATTGAGTCATC
390 AAATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATC
* * *
13368711 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTACGAATTTACAAGCCATAAAAATGG
455 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
13368776 CATTGGCACGCAGAAATATGAAGATGTGCCCAAACCCACCAACCACCCTATCGATCCATGGCTTG
520 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * *
13368841 CGCATTCCGCCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGTCCGCCCACTCGTTTCATCG
585 CGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCAACCGCCCGCCCGCTCGTTTCGTCG
* * * * *
13368906 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATA-ATCAGACCGAATCAAGGGTTACGGTAG
646 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTA-AGATCAGACCGGACCAAGGGTTGCGGCAG
* * * * * * * * * *
13368970 TAGCATGGGCAGCACGCAAAGGGGGACCTGGCCGATCCCCTGCTTGCACATCCCACCCTTCTGGC
710 CAGGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
** *
13369035 CGGCTGAGTGCCCGCACGCTCATTTCGTGGGT
775 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
13369067 GTGTGCGAAC
Statistics
Matches: 4161, Mismatches: 835, Indels: 579
0.75 0.15 0.10
Matches are distributed among these distances:
852 5 0.00
853 5 0.00
854 4 0.00
855 4 0.00
856 15 0.00
857 7 0.00
858 29 0.01
859 22 0.01
860 19 0.00
861 14 0.00
862 14 0.00
863 3 0.00
864 33 0.01
865 12 0.00
866 5 0.00
867 12 0.00
868 11 0.00
869 5 0.00
870 4 0.00
871 3 0.00
872 118 0.03
873 13 0.00
874 16 0.00
875 400 0.10
876 153 0.04
877 19 0.00
878 48 0.01
879 79 0.02
880 11 0.00
881 183 0.04
882 5 0.00
883 15 0.00
884 16 0.00
885 7 0.00
886 4 0.00
887 1 0.00
889 2 0.00
890 2 0.00
891 2 0.00
893 4 0.00
895 3 0.00
896 2 0.00
897 1 0.00
898 2 0.00
899 1 0.00
900 1 0.00
901 4 0.00
902 194 0.05
903 899 0.22
904 401 0.10
905 69 0.02
906 94 0.02
907 348 0.08
908 316 0.08
909 8 0.00
910 2 0.00
911 20 0.00
912 20 0.00
913 12 0.00
914 74 0.02
915 11 0.00
916 6 0.00
917 1 0.00
918 11 0.00
919 109 0.03
920 3 0.00
921 7 0.00
922 6 0.00
923 4 0.00
924 6 0.00
925 4 0.00
926 8 0.00
927 11 0.00
928 22 0.01
929 21 0.01
930 6 0.00
931 14 0.00
932 18 0.00
933 30 0.01
934 22 0.01
935 7 0.00
936 14 0.00
937 5 0.00
938 5 0.00
939 6 0.00
940 9 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCTCGAGCATGTGTTGGTGCAGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGAG
AACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCACACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
AATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCAACCGCCCGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGAT
CGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTAGCATACA
GAGTTCATTCCAGTCTAAGATCAGACGACCGAGGGTTACGACAGCACATGCTGG
Done.