Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 83 of 190
Found at i:13368203 original size:26 final size:26
Alignment explanation
Indices: 13368167--13368219 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13368157 GTTGACTTAG
13368167 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
13368193 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
13368219 G
1 G
13368220 GTCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:13370476 original size:26 final size:26
Alignment explanation
Indices: 13370446--13370498 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13370436 GTTGACTTAG
13370446 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13370472 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13370498 G
1 G
13370499 ATGGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13371277 original size:263 final size:263
Alignment explanation
Indices: 13370799--13371322 Score: 807
Period size: 263 Copynumber: 2.0 Consensus size: 263
13370789 GTCTAAAATC
* *
13370799 GGGACATTTTTTTCAAATGGTCACCAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTAT
1 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTAT
*
13370864 GCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGCGACGAAAACTACTTCCAAAAAAA
66 GCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGCGACCAAAACTACTTCCAAAAAAA
* * * *
13370929 TTTTTAAAAATCCTGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGCAAAGGAGTCGTCTTG
131 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTTG
* *
13370994 CCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCAT
196 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCAT
13371059 TTG
261 TTG
* * *
13371062 GGGACACTTTTTTCATAA-GGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
1 GGGACACTTTTTTCA-AATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTA
* * * * *
13371126 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCCTTCCGAAAAA
65 TGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGCGACCAAAACTACTTCCAAAAAA
* ** * *
13371191 ATTTTAAAAAATCCCGAACCTTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
130 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTT
* * *
13371256 GCCGTGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
195 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCA
13371321 TT
260 TT
13371323 GGGATGCAGA
Statistics
Matches: 235, Mismatches: 25, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
263 233 0.99
264 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29
Consensus pattern (263 bp):
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTAT
GCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGCGACCAAAACTACTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCAT
TTG
Found at i:13372333 original size:26 final size:26
Alignment explanation
Indices: 13372297--13372375 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
13372287 GTTGGCTTAG
13372297 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13372323 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13372349 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13372375 G
1 G
13372376 ATCGGACTGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13374075 original size:877 final size:876
Alignment explanation
Indices: 13372356--13375643 Score: 4123
Period size: 904 Copynumber: 3.7 Consensus size: 876
13372346 TAAGCATACG
** *
13372356 GAGTTCATTCCCAGTTTAAGATCGGA-CTG-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
1 GAGTTCATTCCCAGTCCAAGATCGGATC-GAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
* * * *
13372419 GCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACAATCGTCGGAGCATCACCGAAGAAACTG
65 GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
* * * *
13372484 A-TAGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGTACATGATGTGCGAT
130 ACCA-ACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
* * * * * *
13372548 GGATGCTGGTACTTGGCCCTTATATTGGCCCCTTATTCGTCATCAAACCTCGAGAACTCACACCC
193 GGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
*
13372613 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGTG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
13372678 ACACTTTTTTCAAGTGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCT
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCA
* *
13372743 TGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
388 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
* *
13372808 TAAAAAATTCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCC
453 TAAAAAA-TCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
13372873 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
13372938 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
582 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-ATCGATCCACGGCTTGCGCAT
* * * *
13373003 CCCGTCTATCTGACCAGTGTAGTGCCAGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
646 CCCGTCTATCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * * *
13373068 GGCATATGGAGTTCATTCCCAGTATAAGATTGGACCGGACCAAGGGTTGCGCCAGCAGGATCGGC
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGCAGGATCGGT
* ** * * *
13373133 AACACGTGGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCA
775 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCA
* * *
13373198 CCCGCCCACTCGTTTCGTGGGTTGACTTAGGAATGTA
840 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGAATGTA
* * *
13373235 GAGTTCATTCCCAGTCCAAGATCGGATC-AGATCGAGGGTTGTGACAGCACATGCTGGGCTTGGG
1 GAGTTCATTCCCAGTCCAAGATCGGATCGAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * *
13373299 CATGTGTCGGTGCTGCATTTTTCTTCGTCGAGGCACCATC-TCCGGATCATCACCGGAGAACCTG
66 CATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-CGGAGCATCACCGGAGAACCTG
* * * * * *
13373363 ATCAACGGCAATGGGGTTCCGGCAACCGGGGGGGCTGGGGGGTGTGCACACATGATGTGCGATGG
130 ACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
13373428 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* * * *
13373493 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATCAAAGCGTCTAAAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * ** * *
13373558 ACTTTATTCAAATTGTCACAAAATCTTGTACATTTTAAGCTTTTAGCTGAATTTTTTTGTGCATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATG
*
13373623 CCAAAAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
390 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* * *
13373688 AGAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATC
455 AAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
* * *
13373753 AAACTTCACGTGAAGCCTTAGGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCA
520 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * **
13373818 GGGAGAAATATGAGGATGTGCCTAAACCCACCTACCACCTCATCGATCCACAACTTGCGCATCCC
585 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC-CATCGATCCACGGCTTGCGCATCCC
* * * * * ** *
13373883 ATCTTTCTGGCCGGTATAGTGCCCGCCCGCCCACCCGCCCACTAATTTCATCGGTTGGCTTAGGC
649 GTCTATCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * *
13373948 ATACGAAGTTCGTTCCCAGCCTAAGATCAGATCGGATCGAGGGTTGCGGCAGTAGGATCGGTAGC
714 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGCAGGATCGGTAGC
* * * * * *
13374013 ACACAGAGGGGGACCCGATTGATCCCCGACTTACGCATCTCGCCCTTCTGGCCGGTTGAGCACCC
778 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCC
* * * *
13374078 GCACGCTTGTTTCATGGGTTGGCTTAGGCATATA
843 GCACGCTTGTTTCGTGGGTTGACTTAGGAATGTA
* *
13374112 GAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATTGAGGGT
1 GAGTTCATTCCCAGTCCAAG-AT-C-G-G---------A-TC---GA---GACC-----GAGGGT
* ** * *
13374177 TGCGATAGCACATGCTGTTCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGTACCATC
41 TGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * *
13374242 GTTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGT
106 GTCGGAGCATCACCGGAGAACCTGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG-
* *
13374307 GGTGTGCGCACATGATGTGCAATGGGTACTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCA
170 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCA
* * *
13374372 TCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTCAGATTTTACTGGTTTGCTGCCAGTAG
235 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
13374437 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGT
300 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
13374502 TTTTAGC-GAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
365 TTTTAGCTG-AATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** * * * *
13374566 CCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCTGAA-CAGTAAAAAGTTTTAAAAATCGTGAA
429 CCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCA-CAAAAAGTTTCAAAAATCATGAA
* * * *
13374630 AAGTAAAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTTTATAAAT
493 AAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** *
13374695 TTACAAGCTGTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
558 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-
* * * * * * * *
13374760 CCCATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCTGGCGTAATGCCCGCCCACTCGCCCGT
622 CCCATCGATCCACGGCTTGCGCATCCCGTCTATCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGC
* * * *
13374825 CTGCTCGTTTTGTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
687 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-
* * * *
13374890 GAGGGTTTCGGCAGCAGGATTGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCCCAT
751 GAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* ** *
13374955 CCCGCCCCTCTGCCCAATTGAGTACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGT
816 CCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTTGTTTCGTGGGTTGAC-T-----TA--G-G-
13375020 TCATTCCCAGTCTAAGTATA
871 --A-----A---T--G--TA
* * * * *
13375040 CGGAGTTCATTCCCAGTCTAAGATTGGA-CCAGACCGAGGGTTAC-AGCAGCAAATGCTGGGCTC
1 --GAGTTCATTCCCAGTCCAAGATCGGATCGAGACCGAGGGTTGCGA-CAGCACATGCTGGGCTC
* * * * * * **
13375103 GAGCATGTCTTGGGGCCGCATTTTTCTTCGCCGGGGCACCATCGGCAGAGCATCGTCGGAGAACC
63 GGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACC
* * *
13375168 TGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
128 TGACCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
13375233 GGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCTTCAAACTTCGAGAACACACACCC
193 GGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
* *
13375298 CC-TAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* ** *
13375362 ACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACAGTTTTGTGTA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCA
* *
13375427 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAT-TTTCCGAAAAAATT
388 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAAAAATT
* * * * * * * *
13375491 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATCATGCG
452 TTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
*
13375556 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
**
13375621 GCACATAGAAATATGAAGATGTG
582 GCACGCAGAAATATGAAGATGTG
13375644 GCTTGCGCAT
Statistics
Matches: 2070, Mismatches: 272, Indels: 111
0.84 0.11 0.05
Matches are distributed among these distances:
877 378 0.18
878 272 0.13
879 137 0.07
880 3 0.00
881 1 0.00
890 1 0.00
891 2 0.00
895 1 0.00
898 3 0.00
902 303 0.15
903 205 0.10
904 723 0.35
905 3 0.00
909 4 0.00
910 2 0.00
912 2 0.00
913 1 0.00
915 1 0.00
917 1 0.00
921 1 0.00
924 1 0.00
926 1 0.00
927 1 0.00
928 2 0.00
929 2 0.00
930 19 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (876 bp):
GAGTTCATTCCCAGTCCAAGATCGGATCGAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
CATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA
CCAACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
AAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCATCGATCCACGGCTTGCGCATCCCGT
CTATCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGCGGCAGCAGGATCGGTAGCACG
CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCA
CGCTTGTTTCGTGGGTTGACTTAGGAATGTA
Found at i:13374135 original size:26 final size:26
Alignment explanation
Indices: 13374105--13374157 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13374095 GTTGGCTTAG
*
13374105 GCATATAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
* *
13374131 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
13374157 G
1 G
13374158 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:13374621 original size:26 final size:27
Alignment explanation
Indices: 13374581--13374639 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
13374571 ACTCCTTCTA
*
13374581 AAAAAATTTTAAAAAATCCTGAACAGT
1 AAAAAATTTTAAAAAATCCTGAAAAGT
* *
13374608 AAAAAGTTTT-AAAAATCGTGAAAAGT
1 AAAAAATTTTAAAAAATCCTGAAAAGT
13374634 AAAAAA
1 AAAAAA
13374640 CGAGTCGTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 19 0.68
27 9 0.32
ACGTcount: A:0.59, C:0.07, G:0.10, T:0.24
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCCTGAAAAGT
Found at i:13375047 original size:26 final size:26
Alignment explanation
Indices: 13375011--13375061 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
13375001 TGACTTAGGC
13375011 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
13375037 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
13375062 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:13376586 original size:26 final size:26
Alignment explanation
Indices: 13376550--13376602 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13376540 GTTGACTTAG
13376550 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13376576 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13376602 G
1 G
13376603 ATCGAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13377481 original size:26 final size:26
Alignment explanation
Indices: 13377452--13377504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13377442 GTTGACTTAG
13377452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13377478 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13377504 G
1 G
13377505 ACCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13377711 original size:904 final size:903
Alignment explanation
Indices: 13375720--13380450 Score: 6334
Period size: 904 Copynumber: 5.3 Consensus size: 903
13375710 GCTTAGGCAT
* * * *
13375720 AGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCACCTGGGCACCATCG-TCGG
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCTCGG
* * * * *
13375784 AGCATCACCGGAGAACCTGACAGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCGAAGGGGGTG
66 AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTG
*
13375849 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAA
130 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
13375914 ACCTCGAGAACTCATACCCTCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
195 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
13375979 TAAAGTGTCTGAAATTGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTT
260 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
13376044 AGCTGAAT-TGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
325 AGCTGAATGT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** *
13376108 AACTCCTTCCGAAAAAATTTTAAAAAATTCTCGAACAATAAAAAGTTTCAAAAATCGTGAAAAAT
389 AACTCCTTCCGAAAAAATTTTAAAAAA-TCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAAT
* *
13376173 AAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
453 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* **
13376238 AA-CGATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
518 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
13376302 TCAATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGT
583 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC-C-C-CC-G-
* *
13376367 CCGCTCGTTTCGGT-GGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCGGATCC-GA
642 CCGCTCATTTC-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGA
* ** * * *
13376430 TTGAGGGTTGCGGTAGTAGGATCGTTAGCACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGCCC
705 CTGAGGGTTGCGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * *
13376495 ATCTCGCCCCTCTGGCCGACTGAG-ACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
770 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
** * *
13376559 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAGGTTT
835 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACAAGACCAAGGGTT
*
13376623 ACGAC
899 GCGAC
* * * * *
13376628 AGCACATGCTGGGCTCGAGCATGTGCTAGTGCTGCATTTTTCTTCGTCGGGGCACCATC-ATCGG
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCTCGG
* * ** * *
13376692 AGCATCATCGGAGAACCTGATCGGTGGCATTGGGGTTCCGACGATCGGGGGGACC-GGAGGGTGT
66 AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
* * * *
13376756 GCGCAGC-TAATGTGCGAT-GGTGCCGGTACTTTGCCCTTATGTTGG-CCCCTATCCCTCATCAA
131 GCGCA-CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
13376818 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
195 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
13376883 TAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTTGAGTTTTT
260 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
13376948 AGTTGAATGTTTTTATGCATGCCAACAAAATATACAAGGATCACGTCTACCAAGTTTGGGGCAAA
325 AGCTGAATGTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
13377013 AACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATA
389 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATA
*
13377078 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
454 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
13377143 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCTTAT
519 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
13377208 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCTGCT
584 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCGCC-GCT
** * * *
13377273 CATTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTCAGATCAGACCAGACTGAGGT
647 CATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG
* * * * * *
13377338 TTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGCCCCGATCGATCCCCGGCTTGCGCATCCCGC
712 TTGCGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
13377403 CCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
777 CCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
13377468 CCCAGTCTAAGCATACGGAGTTCATTCCCCGTCTAAGACCAGATC-AGACCAAGGGTTGCGCC
842 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAAGACCAAGGGTTGCGAC
* * *
13377530 AGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGCCGAGGCACCATCGCT-GG
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCTCGG
** * *
13377594 AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-AGGGGGTGT
66 AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
* * *
13377658 GCGCACATGATGTACGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCCCATCAAA
131 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * ** *
13377723 CCTCGAGAACTAACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTATCGGTAGCCATT
196 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
13377788 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTTGAGTTTTTG
261 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
13377853 GCTGAATTGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
326 GCTGAA-TGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
13377918 ATTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
390 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAG
* * * *
13377983 AAAACGAGTTGTCTTGCCATAAAACTTCACTTGAAAGCTTAAGGGACCATTGTATGAATTTACAA
455 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *** **
13378048 GCCATAAAAAGTGTCATTGGTGCGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATTCTAT
520 GCCATAAAAA-TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
13378113 CGATCCATGACTTGTGCATCCTGTCTCTCTGGCCGACGTAGTGCCCACCCG---CCCGCACG---
584 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGC-CGCTC
* * *
13378172 -TTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGA-TCGAGGG
648 ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGG
* * * * * * *
13378235 TTGCGGTAGTAGGATCGGCAACACGTAGAGGGGGACCTGACCGATCTCCGGCTTGCGTATCCTGC
712 TTGCGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * *
13378300 CCCTTTGGCCGGCTGAGCACCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
777 CCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * ** **
13378365 CCCTGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATCAGACGGGACTGAGGGTTGCGAC
842 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCAAGGGTTGCGAC
* ** *
13378427 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG-TCGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCTCGG
* * * * * *
13378491 AGCATCGCCGGAGAACCTGACCGACGACTTTAGGGTTCCGACGATTGGGGCGGCCGGGGGGGTGT
66 AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
* * * * *
13378556 TCGCACATGATGTGCAATGGGTGCTCGTACTTAGCCCTTATGTTGGCCCCCTATCCCTCATCAAA
131 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
13378621 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATT
196 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
13378686 AAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGGCATAAAATCTTGTACACTTCGAGTTTTT
261 AAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * ** **
13378750 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACACCTAAAAAGTTTGGGGCCAAA
325 AGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
13378815 ACTCCTTCTGAGAAAATTTTAAAAAATCTCGAACCGT-AAAA-TTTTCAAAAATCGTGAAAAATA
390 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTT-AAAAATCGTGAAAAATA
*
13378878 AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
454 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** * *
13378943 AGCCATAAAAATGGCATTCACATGCAGAAATATGAAGATGTGCCCAAACCCACTTACCACCCTAT
519 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
13379008 CGATCCATGGCTTGCGCATCCTGTCTCGCTGGCCGACGTAGTGCCGGCGCGCCCGCCTGCCCGCT
584 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCG-CCGCT
* * * * ** *
13379073 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGG
647 CATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG
* * * * * * * *
13379138 TTACAGCAGCAGAATCGACAGCAAGTAGAGGAGGACCCGGTCGATCCCCGGCTTGCGCATCCCGC
712 TTGCGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * * * * *
13379203 CCCTATGGCAGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAATTCATT
777 CCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * *
13379268 CCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCGGACAAGATCAAGGGTTGTGGC
842 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCAAGGGTTGCGAC
* * * *
13379330 AGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTGC-CGG
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCTCGG
* * *
13379394 AGCATCGCCGGAGAACCTGACCGGCGGCTTTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGT
66 AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
13379458 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
131 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
13379523 CCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATT
196 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
13379588 AAAGTGT-TAGAAATGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTCGAGTTTTT
261 AAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
13379652 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCCAA
325 AGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* ** * *
13379717 ACTCCTTCCGAAAAAATTTTACAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTAAAAAATAG
390 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAG
* * *
13379782 AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTTTATGAATTTACAA
455 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
13379847 GCTATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACAAACCTATC
520 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
13379912 GATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCTCG-----C-CCGCTCAT
585 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCCGCTCAT
* * * ** *
13379971 TTCGTCGATTGGCTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTA
650 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTG
* * * * * *
13380036 CGATAGTAGGATCGACAACACGCAGAGGGGGACTCGATCGATCCTCGGCTTGCGCATCTCGCCCC
715 CGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* * *
13380101 TCTGGCCTGCTAAGCGCCCGTACGCTTGTTTCGT-GGTTGAC-TAGGCATACGGAGTTCATTCCC
780 TCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* *
13380164 AG--T---C-TA---A--T-A-T--CAGACT-AGAT----C--G----AGGGTTGCGGC
845 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCAAGGGTTGCGAC
* ** * *
13380197 AGCACATGCTGGGCTTGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATTGC-CAG
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCTCGG
* * * * ** *
13380261 AGCATCATCGAAGAACCTGACCGACGGCATTAGGGTTTCGGTGATCAGGGGGGCCGGGGGGGTGT
66 AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
* * * *
13380326 GCGCACATGATTTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCACCCTATCTCTCATCAAA
131 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
13380391 CCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAG
196 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
13380451 GCTAGGAATT
Statistics
Matches: 3400, Mismatches: 383, Indels: 120
0.87 0.10 0.03
Matches are distributed among these distances:
867 114 0.03
868 126 0.04
871 1 0.00
873 1 0.00
877 4 0.00
878 4 0.00
880 1 0.00
881 1 0.00
882 1 0.00
884 1 0.00
887 2 0.00
888 1 0.00
891 1 0.00
893 23 0.01
894 7 0.00
895 233 0.07
896 94 0.03
897 414 0.12
898 190 0.06
899 5 0.00
900 7 0.00
901 133 0.04
902 501 0.15
903 533 0.16
904 574 0.17
905 302 0.09
906 22 0.01
907 1 0.00
908 103 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (903 bp):
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCTCGG
AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCCGCTCATT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC
GGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCT
CTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCAAGGGTTGCGAC
Found at i:13378385 original size:26 final size:26
Alignment explanation
Indices: 13378349--13378401 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13378339 GTTGACTTAG
*
13378349 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13378375 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13378401 G
1 G
13378402 ATCAGACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13379282 original size:26 final size:26
Alignment explanation
Indices: 13379252--13379304 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13379242 GTTGACTTAG
13379252 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* * *
13379278 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAATTCATTCCCAGTCTAA
13379304 G
1 G
13379305 ATCGGACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:13381658 original size:26 final size:26
Alignment explanation
Indices: 13381621--13381673 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13381611 GTTGACTTAG
13381621 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGTAGTTCATTCCCAGTCTAA
13381647 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATAC-GTAGTTCATTCCCAGTCTAA
13381673 G
1 G
13381674 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGTAGTTCATTCCCAGTCTAA
Found at i:13382527 original size:26 final size:26
Alignment explanation
Indices: 13382497--13382549 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13382487 GTTGACTTAG
*
13382497 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13382523 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13382549 G
1 G
13382550 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13385176 original size:26 final size:26
Alignment explanation
Indices: 13385145--13385197 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13385135 GTTGACTTAG
*
13385145 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13385171 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13385197 G
1 G
13385198 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13386076 original size:26 final size:26
Alignment explanation
Indices: 13386046--13386098 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13386036 GTTGACTTAG
*
13386046 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13386072 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13386098 G
1 G
13386099 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13387854 original size:26 final size:26
Alignment explanation
Indices: 13387818--13387870 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13387808 GTTGACTTAG
*
13387818 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13387844 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13387870 G
1 G
13387871 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13388301 original size:895 final size:893
Alignment explanation
Indices: 13383395--13388721 Score: 6663
Period size: 904 Copynumber: 6.0 Consensus size: 893
13383385 GTTAACTTAG
* * * * * * *
13383395 GCATACAGAGTTCATTCCCAGTCTAACATCGAATCAGACCGAGGGTTACGGCAGCATATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* ** * * *
13383460 CTCGGGAATGTGCTGGTGCCACATTTTTCTT--TCCAAGGCACCATCGTCAGAGCATTGTCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT-CGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
13383523 AACCTGACCGGCAGTATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
13383587 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-CCCTCATCAAACCTTGAGAACGCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
** * *
13383651 CACCCCCTTAAAGAGCATTTGAGATTTTGTAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
13383716 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTG
* * * * * *
13383781 TAGCATGCCAAAAAAAAAAAAAGGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTTTCGAG
389 T-GCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAA
* * * *
13383846 AAAATTTTAAAAAATCTTGAACCTTGAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGT
451 AAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
13383911 CTTGCCATGAAACATCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**
13383975 GTGTTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
13384040 -CTGCATCCCGTCTCTCT-GTCGACGTAGTGCCCG-TCGCCCGCTCGTTTCGTCAGTTGGCTTAG
645 GC-GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * *
13384102 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCAGCAGTAGGATCGGCA
709 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATAGGCA
* ** * * * *
13384167 GCACGTAGAGGGGGACCCGACCGATCCTCAGCTTGCGCGCATCCCGCCCCTCTTGTCGGTTGAGC
774 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT--GCGCATCCCGCCCCTCTGGTCGGCTGAGC
* * *
13384232 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAA
837 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
13384289 GCATACGGAGTTCATT-CTAGTCTAAGATCGGATCGGACCGAGGGTTGCGATAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * *
13384353 C-CAGGGAATGTGCTGATG-TAGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCGGA
66 CTC-GGGCATGTGCTGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * *** *
13384416 GAACTTGGCCGGTGGCATTGGGGTTCCGGTTATC-GGGGGGCTCGGAGGGGGGTGTGAGCACATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-C-G-GGGGGGTGTGCGCACATG
* * *
13384480 ATGTGCGATGGGTGCTGGTCCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGACAA
191 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAA
* * *
13384545 CTCACACCCCCTTAAAGAGCGTTTGAGATTTTACCGGTTTACTGCCAGTAGCCATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
13384610 GAAATTGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT
* * * * *
13384675 TTTTGTGCACGGCAACCAAAATACAAGGATCACG--T-CCAAGTTTGGGCCCAAAACTCCTTCTG
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* ** * *
13384737 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGTC
449 AAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
13384802 GTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
13384867 TGGCATTGACACGTAGAAATATGAAGATGTGCCTAAACCCAGCTACCAACCTATCGATCCACGGC
578 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** *
13384932 TTGCGCATCCCGTCTCTTTGGCCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
643 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
* *
13384997 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-T-------T--G-TA-GC
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATAGGC
* * * * * *
13385050 AGCACGCAGAGAGGGA-CC-GACTGAATCCCTGGCTTGTGCATCTCGCCCCTCTGGTAGGCTGAG
773 AGCACGCAGAGGGGGACCCGGTC-G-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAG
* **
13385113 CACCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13385171 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACC-GAACTGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACCGAGGGTTGCGGTAGCACATGCTGG
* *** * * *
13385235 GCTCGGGCATGTGCTGGAGATGCATTTTTCTTC-ACAGGGGCACCAT-ACCGGAGCATC-ACTGG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTC-GG
* * * * * ** * *
13385297 AGAACCTAACCGGCAGTAATGGGGTTTCGGTGATCAGGGGGGCCGCGGGGG-GTGCGCACATGAT
128 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* * * *
13385361 GTTCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACC
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATA-TTGGCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
13385426 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAATAAAGTGTTTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
13385491 AATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATGTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTT
* * ** *
13385556 TTGTGCATGCCAACAAAAATACAACGATCATGTCTACCAAGTTTCAGGCCAAAACTCCTT-CTAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
13385620 AAGAATTTTAAAAAATCCCGAACCG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
451 AA-AATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
13385684 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * **
13385749 GGCATTGGCACACAGAAATATGAAGATGTACCTAAATCCACCTACCACCCTATCGATCCACCACT
579 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** * * *
13385814 TGTGCATCCCGTCTCTCTGGCAGGTGTAGTGCCCACCCGCTCGTCCGCCTGTTGGTTTCATCTGT
644 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C--CCG-C---TCGTTTCATCGGT
* * * ** *
13385879 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGGGGAACCAA
701 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAG
* ** * * * * * * * *
13385944 GATTGATAGCACGCAGAAGGGGATCTGGTCGATCCCTGACTTACACATCCCGCCCCTCTGGCCGG
766 GATAGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGG
* * *
13386009 CTAAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
13386072 GCATACGAAGTTCATTCCCAGTCTAAGATC-AGACTGGACCGAGGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGTAGCACATGCTGG
* * * *
13386136 GCTCGGGCATATGCTGGTGCAACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATGGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * *
13386201 AACCTGAACGGAGGCATTGCGGTTTCGATGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATG
* * * *
13386266 TGTGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACATCGAGGACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
13386331 ACACCTCCTTAAAAAGCATTTGAGATTATATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
13386396 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * ** *
13386460 TGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGAACCAAAAATCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
13386525 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGACAACGAGTAGTC
452 AAATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
13386590 TTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *** * * *
13386655 CTTTGGCATGCAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGTTCCACGACTTG
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
13386720 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCATCCGCCCGTTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C--CCG--C--TCGTTTCATCGGTTG
* * * *
13386785 GCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGGCAGCAGGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGA
* * * * *
13386850 TCA-GTAGGACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGTCGAG
768 T-AGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCG-G
* *
13386914 -TGAGCACCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
13386976 G-AT-C-G-G---A----C---C---G---G-ACC--A---AGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * **
13387015 CTCGGGCATTTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTTAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * *
13387080 TCCTGATCGGTGGCATTAGGGTTCCGACGATC-AGGGGGCCCGGGGGG-GTGCGCACATGATGTA
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
13387143 CGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * * * *
13387208 TGCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGGCAATAGCCATTAAAGTGTCTGATAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13387273 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCTAGTTTTTAGCTGAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTG
* * * *
13387338 TGCAGGCCAAAAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** *
13387403 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
454 ATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
13387468 GCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* **
13387533 TTGGCACATAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGTTTTGCG
583 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
13387598 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTAGCTTAGGCAT
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* **
13387663 ACGGAGTTCATTCCCAGTCTAAGATTAGAGTAGACCGAGGGTTGCGGCAGTAGGATAGGCAGCAC
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATAGGCAGCAC
* * * * *
13387728 GTAGAGGGGGACCTGGTCGATCCCCAGCTTGCGTATCCCGCCCCTCTGGTCGGCTGAGCGCCCGA
778 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGC
* * * *
13387793 ATGGTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13387844 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGATCGATGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
13387909 CTCGGGCATGTGCTGGTGCCAGATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
13387974 ACTTGATCGGCGGCATTGGGGTTCCGACGATC-TGGGGGCCAGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* * *
13388038 GCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTCTCCCTCATCAAACCTCAAGAACTCAC
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *** *
13388103 ACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGGTGTTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
13388168 GGGGACACTTTTTTCAAATGGCCACAAAATCTTGTAGAGTTCGAGTTTTTAGCTGAAGTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
** * *
13388233 TGCATGCCAACAAAAATACAAGGATGGCGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
13388298 ATTTAAAAAAATGCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTT
454 ATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
13388363 GCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** *
13388428 TTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACTTTATTGATCCACGGCTTGCG
583 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
**
13388493 CATCCCGTCTCTCTGGCCGGTGTAGTGCTCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
648 CATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * * * *
13388558 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACC-GAACTGAGGGTTGTGGTAGTAGGATCGGT
709 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGTAGGATAGGC
* * * *
13388622 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCG
773 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCG
* *
13388687 CCCGCACACTCGTTTCGTGGGTTAACTTAGGCATA
838 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
13388722 TCTTAATTTG
Statistics
Matches: 3854, Mismatches: 470, Indels: 213
0.85 0.10 0.05
Matches are distributed among these distances:
867 2 0.00
868 180 0.05
869 2 0.00
870 2 0.00
871 1 0.00
872 4 0.00
874 1 0.00
875 173 0.04
876 291 0.08
877 8 0.00
878 106 0.03
879 206 0.05
880 12 0.00
881 195 0.05
882 175 0.05
883 88 0.02
884 26 0.01
885 5 0.00
886 2 0.00
887 1 0.00
888 2 0.00
889 65 0.02
890 2 0.00
891 1 0.00
892 2 0.00
893 159 0.04
894 308 0.08
895 423 0.11
896 121 0.03
897 64 0.02
898 149 0.04
899 179 0.05
900 2 0.00
901 193 0.05
902 52 0.01
903 101 0.03
904 548 0.14
905 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATAGGCAGCACGCA
GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13391050 original size:26 final size:26
Alignment explanation
Indices: 13391014--13391067 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
13391004 TGGGTTGACA
*
13391014 TAGGCATACGGAGTTCATTCCTTGTC
1 TAGGCATACGGAGTTCATTCCCTGTC
13391040 TAGGCATACGGAGTTCATTCCCTGTC
1 TAGGCATACGGAGTTCATTCCCTGTC
13391066 TA
1 TA
13391068 AGATTGAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCTGTC
Found at i:13392749 original size:26 final size:26
Alignment explanation
Indices: 13392720--13392772 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13392710 GTTGACATAG
* *
13392720 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13392746 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13392772 G
1 G
13392773 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13394405 original size:26 final size:26
Alignment explanation
Indices: 13394369--13394421 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13394359 GTTGACTTAG
13394369 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13394395 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13394421 G
1 G
13394422 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13395287 original size:26 final size:26
Alignment explanation
Indices: 13395258--13395310 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13395248 GTTGACTTAG
13395258 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13395284 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13395310 G
1 G
13395311 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13397074 original size:898 final size:897
Alignment explanation
Indices: 13393427--13399594 Score: 7088
Period size: 898 Copynumber: 6.9 Consensus size: 897
13393417 GCAGTGCCCG
* * * * * *
13393427 CCCGCCCCTCTGGCCAGCTGAGCACCCGTATGCTCGTTTC----GTTGACTTAGGCATACGGAGT
1 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGT
* * * * * * *
13393488 TCAATCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCAAAGATCGGACCGGATCGAGGGTTACG
66 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * * * ** * *
13393553 GTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGAATTTTTCCTCGTCGGGGCCCCATCGTCG
131 GCAGCACATGCCGAGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCG
* * * * * *
13393618 GAGCATGC-CTG-AGAACCTGACCGGCGGCATTGGGGTTCCAACGATCTGGGGGGCCGGGGGGTG
196 GAGCAT-CACCGAAGAACCTGACCGACAGCATTGGGGTTCCGACGATC-GAGGGGTCGGGGGGTG
*
13393681 TGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
259 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * * *
13393746 ACCTCGGGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCAT
324 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * **
13393811 TAAACTGTCTGAAATGGGGACACTTTTTTCAATTTTTCACAAAATCTTGTACACTTCGAGTTTTT
389 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
13393876 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAA
454 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
** ** * *
13393941 ACTCCTTCCGAAAAAATTTTAAAAAATAGCGAACC-GTAAAGGTTTTAAAAATCGTGAAAAATAG
519 ACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGAAAAATCGTGAAAAATAG
*
13394005 AAAACGAGTCGTCTTGCCATTAAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACA
583 AAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
13394069 AGCCA-CAAAATAG-ATTTGGCACATAGAAATATGAAGATGTGCCTAAACCCAACCTACCACCCT
647 AGCCATAAAAATGGCA-TTGGCACGTAGAAATATGAAGATGTGCCTAAACCC-ACCTACCACCCT
* * * *
13394132 ATCGATCCACGGC-TGCGCATCCCGT-TCTTTGGCCGACATAGTGCCCGCCCG--T-CCCGCTCG
710 ATCGAACCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTTGCCCGCTCG
* * **
13394192 TTTCGTCGGTTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGT
775 ATTCGTCGG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
** ** * * * ** * * **
13394257 TACGGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGCTGATCCTCGACTTGCGCAT
839 TGTGATAGCAAGATCGATAGCACACAGAGGGGGACCCGACCAATCCTCGACTTGCGCAT
* * ** * * *
13394316 CCCGCCCCTCTGGCCGGCTAAACG-CTACATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
1 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGT
13394380 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAACCGAGGGTTGC
66 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGC
* * * * * * *
13394445 GGCTGCACATGCTGGGCTCGGACATTATGCTGGTGCTGAATTTTTCTTCACCGGGG---CA----
130 GGCAGCACATGCCGAGCTCGGGCA-TGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGC
* * * * * *
13394503 C----CATCACCGGAGAACTTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTAAGGGGG
194 CGGAGCATCACCGAAGAACCTGACCGACAGCATTGGGGTTCCGACGATC-GAGGGG-T-CGGGGG
*
13394564 GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
256 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
13394629 CAAACCTCT-AGAACTCACACCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGAAG
321 CAAACCT-TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
13394693 CCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTTGAGT
385 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * **
13394758 TTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCATGTCTAATAAGTTT-GGGC
450 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
13394822 AGAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTG-AAAATCATG--
515 -CAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCACAAAAAG-TTTGAAAAATCGTGAA
* * * *
13394884 AAATAAAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAACGGACCATTGTATGAAT
577 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
13394949 TTACAAGCCAT-AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAGCCACCTACCAC
642 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * ** *
13395013 CTTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAATGCCCACCCGCCCGCCCAC
707 CCTATCGAACCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTTGCCCGC
* * * * * ** ** ** *
13395078 TCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTTAGATTGGACTGGATTGAAG
772 TCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * ** * *
13395143 G-T-T-ACAGCAGTAGGATCGACAACACACACAGGGGGACCCGACCGGTCCCCGACTTGTGCAT
837 GTTGTGATAGCA--A-GATCGATAGCACACAGAGGGGGACCCGACCAATCCTCGACTTGCGCAT
* * ** * * * *
13395204 CCCACCCCTTTGGTTGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
1 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGT
** *
13395269 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTG
66 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * *
13395334 GCAGCACATG-CTAGGCTAGAGCATGTGCTGCTGCCGCATTTTTCTT-------------T----
131 GCAGCACATGCCGA-GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCC
* * * *
13395381 ---G--TCA--G-AGAACCTGACCGACGGCATTGGCGTTCCGACGATAGAGAGGGGTGGGGGGGT
195 GGAGCATCACCGAAGAACCTGACCGACAGCATTGGGGTTCCGACGAT--CGAGGGGTCGGGGGGT
* * * *
13395438 GTGCGCACATGATGTGCGATGGTTACTGGCACTTGGCCCTTATATTGGCCTCCTATCCCTCATCA
258 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
13395503 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCA
323 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
13395568 TTAAAGTGTTTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
388 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
13395633 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CAA
453 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
**
13395697 AAGC-CCTTCCAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTTG-AAAATCGTGAAAAAT
518 AA-CTCCTTCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAG-TTTGAAAAATCGTGAAAAAT
*
13395760 AG-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTAC
581 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** * * * * *
13395824 AAGCCATAAAAATGGCATTGGCACACAGAAATATGTAGATGTCCCTAAACACACCTACCACCATG
646 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
13395889 TC-AATCCACGGCTTGCGCATCCCGACTCTCTGGCCGATGTAGTGCCTGTACTTCCGCCTGCCCG
711 TCGAA-CCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C--CCGCTTGCCCG
* * * * *
13395953 CTCGTTTCGTCGGTTGGCTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAG
771 CTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
** * * * *
13396018 GGTTACGATAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCAATCCTCGACTTACGCAT
836 GGTTGTGATAGCAAGATCGATAGCACACAGAGGGGGACCCGACCAATCCTCGACTTGCGCAT
* * * *
13396080 CCAGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATTC-GTAG
1 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAG-AG
* * * * *
13396144 TTCATT-CTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGC
65 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * *
13396208 AGCAGCACATGCCGAGCTCGGGCATATGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCC
130 GGCAGCACATGCCGAGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCC
* * * * * *
13396273 AGAGCATCACCGAAGAACCTGATCGACTGTATTGGGGTTCCGACGTTCAAGGGGTCGGGGGGTGT
195 GGAGCATCACCGAAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGAGGGGTCGGGGGGTGT
* * *
13396338 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATCGACCCCCTATCCCTCATCAAA
260 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
13396403 CCTTGAGAAGTCACACCCCCTTGAAGAGCATTTGCA-ATTTTACATGTTTGCTGCCAGCAGCCAT
325 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
13396467 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAAATGGTCACAAAATATTGTAAACTTCGAGTTTT
389 TAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * ** *
13396532 TAGCTGAACTTTTTTGTGCAAGTGAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAA
453 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
13396597 AACTCCTTCCAAAAAATTTTAAAAAATCTCGAATCACAAAAAGTTTGAAAAATCATGAAAAATAG
518 AACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGAAAAATCGTGAAAAATAG
* * * * *
13396662 AAAATGAGTTGTCTTGCCATGAAACTTCACGCGAAGGCTTGAGGGACCATTGTATGAATTTAAAA
583 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
13396727 GCCATAAAAATGGCATTGGAATGTAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATC
648 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
13396792 GAACCATGGCTTGCGCATCCTGTCTCTTTGGCCGACGTAGTGCCCGCCCGCTTGCTTC-CTCGAT
713 GAACCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTTGC-CCGCTCGAT
* *
13396856 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGC
777 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-
* * * * *
13396921 T-ACAGCAAGATC-AGTAGCACACAGAGGGGGACTCAACCGATCC-CGACTTGCGTAT
841 TGATAGCAAGATCGA-TAGCACACAGAGGGGGACCCGACCAATCCTCGACTTGCGCAT
* * **
13396976 CCCGCCCGTCTGGCCGGCCTGAGCGGCCGCACGCTCATTTCGCGGGTTGACTTAGGCATACAGAG
1 CCCGCCCCTCTGGCCGG-CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAG
* * *
13397041 TTCATTCCCATTCTCAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGAACCGAGGGTTG
65 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTG
* * * ** *
13397105 CGGTAGCACATGCTGGGCTCGATCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGT
129 CGGCAGCACATGCCGAGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGC
* * * * *
13397170 CGGACCATCGCCGAAGAACCTGAGCGACGGCATTGGGGTTCCGACGATCGGTGGGGTCGGGGTGG
194 CGGAGCATCACCGAAGAACCTGACCGACAGCATTGGGGTTCCGACGATC-GAGGGGTC-GGG-GG
*
13397235 GTGTGCGGACATGATGTGC-ATTGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCA
256 GTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
13397298 TCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGTTGCCAGTAG
320 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
13397362 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAG-
385 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
13397426 TTTTAGCTGAA--TTTTTGTGCATGCCAAC-AAAATACAAAGGATCACGTCTACC-AGTTTGGGG
450 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC-AAGGATCACGTCTACCAAGTTTGGGG
* * *
13397487 CC-AAACT-CTATCCAAAAAAATTGTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAA
514 CCAAAACTCCT-TCC-AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGAAAAATCGTGAA
*
13397550 AAATAGAAAACGAGTCGTCTTG-CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAT
577 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** ** * **
13397614 TTACAAGTGATAAAAAATATCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTATGA
642 TTACAAGCCAT-AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
13397679 -CCTATCGATCCCACGACTTGCGCAGCCCGTCTCTCTGGCCGACATAGTGCCCGCCCG-TCTGCC
706 CCCTATCGA-ACCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCT-TGCC
* * * * *
13397742 CGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTGCATTCCTAGTCTATGATC-GAATCA
769 CGCTCG---A-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCA
* * * * * * *
13397806 GACTGAGGGTTGTGGTAGTATGATCGATAGCACATAGAGGGTGACCCGATCAATCCTCGACTTGC
829 GACCGAGGGTTGTGATAGCAAGATCGATAGCACACAGAGGGGGACCCGACCAATCCTCGACTTGC
13397871 GCAT
894 GCAT
* * ** *
13397875 CCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTTTTGGGTTGACTTAGGCATACAAAGT
1 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGT
*
13397940 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
66 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * ** ** *
13398005 GCAGCACATG-CTATGCTCAGGCTTGTGCTGGTGCCCCATTTTTCTTCGTCGGGGCACCATCACC
131 GCAGCACATGCCGA-GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCC
* * * * * *
13398069 -G-G----A--G-A-AA-CTGACAGGCAGCATTGGGGCTCCGATGATCGGGGGGGCTGGGGGGTG
195 GGAGCATCACCGAAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGAGGGGTC-GGGGGGTG
* * * * * * *
13398123 TGCACACATGATGTGTGATGGATGCTAGTACTTGGCCCTTATATTGGTCCCTTATCCATCATCAA
259 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * * *
13398188 ATCTTGAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTTGCAGGTTTGTTGCCAGTAACCA
324 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCA
*
13398253 TT-AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
388 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* **
13398317 TAGCTGAATTTTTTTATGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAA
453 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *** * * * * *
13398381 AAATCCTCCCAAAAATGTTTTAAAAAATTTTGATCCGCAACAAGTTCG-AAAATCGTGTAAAATA
518 AACTCCTTCCAAAAA-ATTTTAAAAAATCCCGAACCACAAAAAGTTTGAAAAATCGTGAAAAATA
*
13398445 GAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
582 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
13398510 AGCCATACAAATGGCACTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTAT
647 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* ** * * *
13398575 CGATCCATGGCTTGCGCATCTTGTCTCTCTAGCCGGCGTAGTACCGCCCACCCG-TTCGCCCGCT
712 CGAACCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---GCCCGCCCGCTT-GCCCGCT
* * *
13398639 C-ATTTCGTCGGTT-GCTTAGGCATACGGAGTTCACTCTCAGTCTAGGATCAGACCAGACCGAGG
773 CGA-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * ** * * * * *
13398702 GTTGTGGTAGC-CGAATTGATAGCACGCAGAGGGGGACTTGATCGATCCCCGGCTTGCTCAT
837 GTTGTGATAGCAAG-ATCGATAGCACACAGAGGGGGACCCGACCAATCCTCGACTTGCGCAT
* * * * * * *
13398763 CCCACCCCTTTTGGCCGGGTAAGTGCCCGCATGCTCATTCCATGGGTTGACTTAGGCATACAGAG
1 CCCGCCCC-TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAG
13398828 TTCATTCCCAGTCTAAAGCATACGGAGTTCATTCCC-GTCTAAGATCGGACCAGACCGAGGGTTG
65 TTCATTCCCAGTCT-AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * *
13398892 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGGGCCGTATTTTTCTTCACTGGGGCACCATCGT
129 CGGCAGCACATGCCGAGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGC
** * * * *
13398957 CGGAGCATCGTC-AGAGAACTTGACCGACAGCATTGGGGTTCTGTCGATCGGGAGGGTCGGGGGG
194 CGGAGCATCACCGA-AGAACCTGACCGACAGCATTGGGGTTCCGACGATCGAG-GGGTCGGGGGG
* * *
13399021 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCCATCTCC-CTT
257 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCAT
* *
13399085 CAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
321 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
13399150 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTTGAGTT
386 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
13399215 TTTAGCTAAATGTTTTTT-TGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
451 TTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
13399279 CAAAACTCGTTCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
515 CAAAACTCCTTC-CAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGAAAAATCGTGAAAA
*
13399344 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTT
579 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
13399409 ACAAGCCACAAAAATGGCATTGGCACATATAGATATATGAAGATGTGCCTAAACCCACCTACCAC
644 ACAAGCCATAAAAATGGCATTGGCAC--GTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
13399474 CCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGGCTGACGTAGTACCCGCCCGCCTGCCCGC
707 CCTATCGAACCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTTGCCCGC
* * * * *
13399539 CCGCTCGTCTTGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCTGTCTAAGATCA
772 TCGAT--TC--GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
13399595 TGCCGGACCA
Statistics
Matches: 4518, Mismatches: 602, Indels: 301
0.83 0.11 0.06
Matches are distributed among these distances:
870 45 0.01
871 77 0.02
872 334 0.07
873 35 0.01
874 7 0.00
875 89 0.02
876 168 0.04
877 1 0.00
879 5 0.00
882 1 0.00
883 5 0.00
884 82 0.02
885 148 0.03
886 335 0.07
887 133 0.03
888 277 0.06
889 291 0.06
890 166 0.04
891 88 0.02
892 72 0.02
893 112 0.02
894 199 0.04
895 30 0.01
896 25 0.01
897 168 0.04
898 569 0.13
899 227 0.05
900 320 0.07
901 289 0.06
902 105 0.02
903 2 0.00
904 75 0.02
905 6 0.00
906 32 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (897 bp):
CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
GCAGCACATGCCGAGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCG
GAGCATCACCGAAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGAGGGGTCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAA
CCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTTGCCCGCTCGATTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATA
GCAAGATCGATAGCACACAGAGGGGGACCCGACCAATCCTCGACTTGCGCAT
Found at i:13398856 original size:27 final size:26
Alignment explanation
Indices: 13398818--13398869 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
13398808 GTTGACTTAG
13398818 GCATACAGAGTTCATTCCCAGTCTAAA
1 GCATACAGAGTTCATTCCC-GTCTAAA
*
13398845 GCATACGGAGTTCATTCCCGTCTAA
1 GCATACAGAGTTCATTCCCGTCTAA
13398870 GATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCGTCTAAA
Found at i:13401454 original size:26 final size:26
Alignment explanation
Indices: 13401425--13401477 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13401415 CTGGTCCAAT
* *
13401425 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13401451 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13401477 C
1 C
13401478 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13402351 original size:26 final size:26
Alignment explanation
Indices: 13402315--13402367 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13402305 CTGGTCCAAT
* *
13402315 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13402341 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13402367 C
1 C
13402368 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13402882 original size:893 final size:890
Alignment explanation
Indices: 13400111--13405001 Score: 4986
Period size: 893 Copynumber: 5.5 Consensus size: 890
13400101 CTGCGGTTTG
* * ** *
13400111 GGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTATTAGATGTGATCCTTGTATT
1 GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
13400176 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
66 TTT-TTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
13400241 AAAAAAGTGTCCCCATTTCAGACACTTTAAATGGCTACTGGCAGCAAACCTATAAAATCTCAAAT
130 AAAAAAGTGTCCCCATTTCAGACACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* ** *
13400306 GCTCTTTAA-GGGGTGTGAGTTTTTAAGGTTTGATGAGGGATA-GGGGCCAAATATAAGGGACAA
194 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-AATATAAGGGCCAA
* * * * * * **
13400369 GTACGAACA-CCATCACAAATCATGAGCGCACA-CCCCCGGCCCCCCCGATCGCCTAAACCCCAA
258 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGAT-GTCGGAACCCCAA
* * * * * * * *
13400432 TGGCACCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGCGCCCC-GACAAAGAAAAATGCGACA
321 TGCCGCCGGTCAGGTTCCCCG-CGATGCTCCGACGATGGTGCCCCAG-CGAAGAAAAATGCGGCA
* * * *
13400496 CCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA-CC-C--TC-GGTCCGATC-----C---G
384 CCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGG
* * * *
13400548 -AT---C-C--TA--C----ACTGGGAATGAACTTCGTATGCCTACGTCAACCGATGAGATGAGC
449 AATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGC
* * * *
13400600 GTATGGGCGCTCTGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCT
514 GTACGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGTC-GGTCCCCCTCT
* * * * * *
13400665 GGGTGCT-ATCGATCTTGCTACCGCAACCCTCGGTCCGATCCAATCTTAGGCTGGGAATGAACTT
577 GCGTGCTGAT-GATCCTGCTACCGCAACCCTCAGTCTGAT-CAATCTTAGACTGGGAATGAACTC
* ** *
13400729 CGTATGCCTAAGCCAACCGACGAATGGAGCGGATGGGCGGGTGGGCGGGCACTACGTCGGCCAGA
640 CGTATGCCTAAGCCAATCGACGAAACGAGCGGA-GGGCGGGT----GGGCACTACGCCGGCCAGA
* *
13400794 GAGACGGGATGCGCAAGCCGTGGATCGATAGCGTGATAGGTGGGTTTAGGCACATCTTCATATTT
700 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA--T
*
13400859 TTGTGTGCCATTTCTGTGTGCCAATGCCATTTTTAATGGCTTGTAAATTCATATAATGGTCCCTT
763 TT-T-TG-CA--------TGCCAATGCCA-TTTTAATGGCTTGTAAATTCATACAATGGTCCCTT
* *
13400924 AAGCGTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTA-TTTTCATGATTTTGAAACTTT
816 AAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTGAAACTTT
** *
13400988 TTATTGTTCG
881 TTAAGGTTCA
** * * * ** *
13400998 GGATTTTTTTCAATTTTTTCGAAAGGATTTTTATCCCCAAACTTGGAAGACGTGATCCTTGTATT
1 GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-T
* *
13401063 TTTTTTGGTG-TGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTT
65 TTTTTTGG-GATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
13401127 GAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
129 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
13401192 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
194 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * *
13401257 TACCAGCACACATCGCACATCATGTGCGCACTCCCCCC-G-CCCCCGATGGCAGGAACCCCAATG
259 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATGTC-GGAACCCCAATG
* *
13401320 CTGCCGGTCAGGTT-CTC-CG--G-T-----GATGGTGCCCCAGCGAAGAAAAATGCGGCACCAG
323 CCGCCGGTCAGGTTCCCCGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAG
13401375 CACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATG
388 CACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATG
* * * *
13401440 AACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGC
453 AACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTAC
* * * *
13401505 GGGTGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGTCGGTTCCCCCTCTGTGT
518 GGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCGGTCGG-TCCCCCTCTGCGT
*** * * * *
13401570 GCTGCCAATCCTG-GAGCTGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCATA
581 GCTGATGATCCTGCTA-CCGCAACCCTCAGTCTGATC-AATCTTAGACTGGGAATGAACTCCGTA
* * * * *
13401634 TGCCTAAGCCAATCGACAAAACGAGC-GA--GTGGGTGGGCACTACACCGGCTAGAGAGATGGGA
644 TGCCTAAGCCAATCGACGAAACGAGCGGAGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGA
* * **
13401696 TGTGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCC
709 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCC
* *
13401761 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATG
774 AATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
13401826 GCAAGACGACTC-ATTTGTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCA
839 GCAAGATGACTCGTTTTTTATTTTTCACGA-TTTTGAAACTTTTTAAGGTTCA
* *
13401878 GGATTTTTTAAAATTTGTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
1 GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
13401943 TTTTTGGCATGCACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
66 TTTTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
13402008 AAAAAGTGTCCCTATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGC
131 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
13402073 TCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTA
196 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
13402138 CCAGAACCCATCACCCATCTTGTGCGCACACCCCCCGGCCCCCCGATTGTCGGAA-CCCAATGCC
261 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA-TGTCGGAACCCCAATGCC
* * * *
13402202 GCCGGTCAAGTTCCCCGACGATGCTCCGACGATGGTGCCCTAACGAAGAAAAAT-TGGCACCAGC
325 GCCGGTCAGGTTCCCCG-CGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGC
* * *
13402266 ACATGCTCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGA
389 ACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGA
* * * *
13402331 A-TTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAACGTAC
454 ACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTAC
* *
13402395 GGGTGCTCAGCCGGCCA-AGAGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGT-CCCCTCTACG
518 GGGTGCTCAGCCGGCCAGAG-GGGCGGGATGCGCAAGCC-GGGATCGGTC-GGTCCCCCTCTGCG
* * * **
13402458 TGGTGATGATCCTGCTATCCGTAACCTTC-GTCTGATCAGATCTTAGACTACGAATGAACTCCGT
580 TGCTGATGATCCTGCTA-CCGCAACCCTCAGTCTGATCA-ATCTTAGACTGGGAATGAACTCCGT
**
13402522 ATGCCTAAGTGAATCGACGAAACGAGCGGACGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGG
643 ATGCCTAAGCCAATCGACGAAACGAGCGGA-GGGCGGGTGGGCACTACGCCGGCCAGAGAGACGG
*
13402587 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTTT-CATG
707 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATG
* *
13402651 CCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTCATCCTTCACGTGAAGTTTCA
772 CCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * ** *
13402716 AGGCATGATGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGGGGTTTA
837 TGGCAAGATGACTCGTTTTTTATTTTTCACGATTTT-GAAACTTTTTAAGGTTCA
* *
13402771 AGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGGCCCAAA-TTGGTAGACGTGATCCTTGTACT
1 GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-T
* * * * *
13402835 TTTTTTGGGATTCTCAAAAAAATTCAGCTAAAAAATAGAATTGTACAAGATTTTGTGACCATTTG
65 TTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * *
13402900 AAAAAAGTGTCCCCATTTCAAACATTTTAATGGCTACTAGCAACAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
13402965 CTCTTTAAGGGGGTGTGAG-TCATCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
195 CTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * **
13403029 TACCAGCACCCATTGCACATCATGTGCGCACACCGCCCGGCCCCCCGACCATCGGAACCCCAATG
259 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA-TGTCGGAACCCCAATG
* * *
13403094 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCA
323 CCGCCGGTCAGGTTC-CCCGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCA
* * * * * * ** *
13403159 GCACATGCCCGAGCCCAGTATGTGCTTCTGCAACCCTCGGTCCGATCTGATCTTAGACTTGGAAT
387 GCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAAT
* ** ** *
13403224 GAACTCTATATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACAAAACGAGCCG-
452 GAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG-CGT
* * ** *** * * * * * **
13403288 A-GGATCGATC-G--GGTCC-----CCCTCTATGTGC-TGCC-GCAAC---C---CTCAGTCTG-
516 ACGGGT-GCTCAGCCGG-CCAGAGGGGCGGGATGCGCAAGCCGGGATCGGTCGGTCCCCCTCTGC
* ** ** * * ** *
13403335 GT-C---CGAT-CT--TA--G--A--CTGGGAATGA--ACTC-TATA-T--GCCT-AA-GCC--A
579 GTGCTGATGATCCTGCTACCGCAACCCTCAGTCTGATCAATCTTAGACTGGGAATGAACTCCGTA
* *** ** * *** ** * *
13403377 -ACC-AAAAAAAT-GAGCG-GGCGA---GAGGGTGGGCACGCACTACATCAGCCAGAGAGACAGG
644 TGCCTAAGCCAATCGA-CGAAACGAGCGGAGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGG
* * * * * * *
13403435 ATGTGCAAGCCGTGGATTGATAGGATGGTAGGT-GCTTCAGGAACATCTTCATATTTCTGCATGC
708 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGC
* * *
13403499 CAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCTTTAAGCCTTCACGTGAAGTTTCAT
773 CAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
13403564 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACA-GTTCG
838 GGCAAGATGACTCGTTTTTTATTTTTCACGA-TTTTGAAACTTTTTA-AGGTTCA
* * **
13403618 GGATTTTCTAAAATTTTTTTGGAAGGAGTTTTCGCCCCATGCTTGGTAGACGTGATCCTTGTATT
1 GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-T
* *
13403683 TTTTTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
65 TTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
13403748 AAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATTTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
13403813 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
13403878 ACCAGCACCCATTGCACATCATGTGCGCACAACCCCCCCCGGCACCCCCGATCGCCGGAACCCCA
260 ACCAGCACCCATCGCACATCATGTGCGCAC-A--CCCCCCGGC-CCCCCGAT-GTCGGAACCCCA
* * ** * * * * *
13403943 ATACCGTCGGTCAGGTTCTCTAGTGATGCTCCGACGATGATG-CCCGGCGAAGAAAAATACGACA
320 ATGCCGCCGGTCAGGTTC-CCCGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCA
* * * *
13404007 CCAGCACATGCTTGAACCCAGCATGTGCTGCTGCAACCCTCGGTCTAGTCCGATCTTAGACTGGG
384 CCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCT-G---G-TC-----C----
* * *
13404072 AATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTA
435 -----A------AT-CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * * * * *
13404137 TGCGTAAGTCAACCCACGAAACGAGCCTGCGGGCGTTCAGTCGGCCAGAGAGGCGGGATGCGAAA
488 TGCCTAAGTCAACCCATGAAATGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * *
13404202 GCTGAGGATCGGTCGGGT---CC-C--C-T-C---T-A-CATGCTACCGCAACCCTCAGTCCGGT
553 GCCG-GGATCGGTC-GGTCCCCCTCTGCGTGCTGATGATCCTGCTACCGCAACCCTCAGTCTGAT
* * * *
13404254 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGTGG
616 -CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGC-GGAGGGCGG
* * *
13404319 GTGGGCACTCACTGCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCAATAAGGT-GTAGG
679 GTGGGCACT-A---CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
13404383 T-GGTTTAGGAACATCTTCATATTTCTATG--TGCCAATGCCATTTTTATGGCTTGTAAATTCAT
740 TGGGTTTAGGCACATCTTCATATTT-T-TGCATGCCAATGCCATTTTAATGGCTTGTAAATTCAT
* * * *
13404445 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
803 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACG
* *
13404510 ATTTTCAAAACTTTTTACGGTTCA
868 ATTTT-GAAACTTTTTAAGGTTCA
* * *** * * * *
13404534 AGATTTTTTAAAATTCTTTCAAAAGAAGTTTTTGTCCCAAACTTGGTAGATGTGATCCTTGTACT
1 GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-T
* * * * *
13404599 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTCTACAAGATTTTTTGACCATTTG
65 TTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
13404664 AAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTAGCAGCAAACCTGTAAAATGTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
13404729 CTCTTTAAGGAGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
13404794 ACCAACACCCATTGCACATCATGTGCGCACACCCCCCGGCCCACCCGATCGCCTGAACCCCAATG
260 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGAT-GTCGGAACCCCAATG
* * * * ** *
13404859 CCGCCGGTCAGGTTCTCCAGTGATGCTTCGACGATGGTGCCTC-GAC-AGAGAAAAATATGGCTC
323 CCGCCGGTCAGGTTC-CCCGCGATGCTCCGACGATGGTGCCCCAG-CGA-AGAAAAATGCGGCAC
* * * * ** *
13404922 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGATTGGGA
385 CAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGA
*
13404987 ATGAACTCCGTATGC
450 ATGAACTCTGTATGC
13405002 ATAAGCCAAC
Statistics
Matches: 3366, Mismatches: 461, Indels: 353
0.81 0.11 0.08
Matches are distributed among these distances:
846 21 0.01
847 194 0.06
848 237 0.07
849 3 0.00
851 72 0.02
852 61 0.02
853 2 0.00
854 1 0.00
856 4 0.00
857 2 0.00
858 2 0.00
860 1 0.00
861 3 0.00
862 2 0.00
863 1 0.00
864 1 0.00
865 4 0.00
866 1 0.00
868 1 0.00
871 2 0.00
873 2 0.00
874 3 0.00
875 58 0.02
876 6 0.00
877 70 0.02
878 10 0.00
879 297 0.09
880 114 0.03
881 14 0.00
882 4 0.00
883 4 0.00
884 5 0.00
885 10 0.00
886 74 0.02
887 194 0.06
888 65 0.02
889 89 0.03
890 179 0.05
891 28 0.01
892 103 0.03
893 453 0.13
894 57 0.02
895 124 0.04
896 4 0.00
897 6 0.00
898 2 0.00
899 3 0.00
900 7 0.00
901 161 0.05
902 4 0.00
903 2 0.00
904 2 0.00
906 1 0.00
907 2 0.00
908 6 0.00
909 7 0.00
912 2 0.00
913 80 0.02
914 56 0.02
915 5 0.00
916 401 0.12
917 35 0.01
918 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATGTCGGAACCCCAATGCCG
CCGGTCAGGTTCCCCGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCAC
ATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAAC
TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGG
TGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGGTCGGTCCCCCTCTGCGTGCTGA
TGATCCTGCTACCGCAACCCTCAGTCTGATCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAATCGACGAAACGAGCGGAGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
TTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
GACTCGTTTTTTATTTTTCACGATTTTGAAACTTTTTAAGGTTCA
Found at i:13404090 original size:26 final size:26
Alignment explanation
Indices: 13404061--13404139 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
13404051 CTAGTCCGAT
*
13404061 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
13404087 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
13404113 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
13404139 C
1 C
13404140 GTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:13405718 original size:26 final size:26
Alignment explanation
Indices: 13405689--13405741 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13405679 CTGGTCCGAT
13405689 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13405715 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13405741 C
1 C
13405742 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13406619 original size:26 final size:26
Alignment explanation
Indices: 13406590--13406642 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13406580 CCGATCCGAT
*
13406590 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13406616 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13406642 C
1 C
13406643 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13407377 original size:26 final size:26
Alignment explanation
Indices: 13407348--13407400 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13407338 CTGGTCCGAT
* * *
13407348 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCCTATG
13407374 CTTAGACTCGGAATGAACTCCCTATG
1 CTTAGACTCGGAATGAACTCCCTATG
13407400 C
1 C
13407401 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCCTATG
Found at i:13408272 original size:26 final size:26
Alignment explanation
Indices: 13408236--13408285 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13408226 GTCCGATCTC
*
13408236 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
13408262 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
13408286 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:13409852 original size:26 final size:26
Alignment explanation
Indices: 13409816--13409868 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13409806 CTGGTTCGAT
13409816 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
13409842 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
13409868 C
1 C
13409869 CAAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:13410776 original size:26 final size:26
Alignment explanation
Indices: 13410740--13410795 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
13410730 CCGGTCCGAT
13410740 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
13410766 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13410792 CTTA
1 CTTA
13410796 AGGCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:13411265 original size:904 final size:902
Alignment explanation
Indices: 13408341--13413884 Score: 6818
Period size: 904 Copynumber: 6.1 Consensus size: 902
13408331 AGGGACGGGA
* * *
13408341 TTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
1 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * *
13408406 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATATTCGAAGCTTTTTGT
66 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * * *
13408471 GGTTC-AGGATTTTTTAAAATTTTTTTGGAAGGAGCTTTGGCCCAAAACTTGGTAGACGTGATCA
131 GGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * * * *
13408535 TTGTAGTTTTGTTCGCATGCATAAAAAAAGTCAGCTAAAAACTCTAAGTGTACAAGATTTGGTGA
195 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * * *
13408600 CCATTTGAAAAAAGTGTCCGCATTTTAGACACTTTAATGGCTACTGGAAGCAAACCTATAATATC
260 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * ** * *
13408665 TCAAATGCTCTTTAAGGAGGTGTGACTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAATG
325 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * **
13408730 GCCAAGTGCCAGCACCCATCGCAAATCATGTGCGCACA--CCCCCTGCCCCCTAATCGTCGGAAC
390 GCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCGATCGTCGGAAC
* * ***
13408793 CCCAATGCTGTCGGTCAGGTTCT-T--CGA---T-----GATGCTCCGGCGATGGTGCCCCGGTA
455 CCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGCTCC-ACGATGGTGCCCCGACG
* ** * ** *
13408847 AAGAAAAATGTAGCACCAGGACATGCCCGAGCCCAGCATC-TGCTGCCATAACCCTCGGTCTGGT
519 AAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCA-CGTGCTGTCGCAACCCTCGGTCCGGT
* * **
13408911 CCGATCTAAGACTGGGAATGAACTTCGTATGCTTAGACTATGAATGAACTCCGTATGCCTAAGTC
583 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
13408976 AACCCATGAAACAAGCGTGCAGGTGCTCAGCCGACCAAAGGGGCGGGATGCGCAAGCCGGGGATC
648 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * ** * *
13409041 AAG-CGAGTCCCCCTCTACGTGCTACCGATCCTGCTACCGTAACCCTTGGTCTGGTTCGATCTTA
713 -GGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTATAACCCTCGGTCCGGTTCGATCTTA
* * * *
13409105 GACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGTGGGCGGGCGGGCGGG
777 GATTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACG-A----------GGCAGGCGGG
* * * *
13409170 CACTTCGCCGGCTAGAGAGACAGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
831 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
13409235 GCAAATC
896 GCACATC
*
13409242 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
1 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * * **
13409307 TTCACGTGAAGTTTCATGGTAGGAAGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTAT
66 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * * ***
13409372 GGGTC-AGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGAGACAAACTTGGTAGACGTGATCC
131 GGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
13409436 TTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
195 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * * * **
13409501 CCTTTTGAAAAAAGTGTCGCCGTTTGAGACACTTTAATGGCTACTAGCAATAAACCTGTAAAATC
260 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * * *
13409566 TCAAATGGTCTTTAAAGGGGTCTCAGTT-TTCGAGGTTTGATGAGTGATA-GGGGCCAATATAAG
325 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTT-GAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
13409629 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCACCTGCCCCTCGATCGCCGGAA
389 GGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCGATCGTCGGAA
* * *
13409692 CCCCAATGCCGTCGATCAGGTTTTCCGGCGATGCT-C--CG--G-----CGATGGTGCCCCGACG
454 CCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGCTCCACGATGGTGCCCCGACG
*** * * ** * * * * *
13409747 AAGAAAAATGCATCACCAGCACATGCCCGAGCCCAGCATGCACTGTCACAACCTTCAGTCTGGTT
519 AAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCACGTGCTGTCGCAACCCTCGGTCCGGTC
* * *
13409812 CGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTAA
584 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
13409877 ACCCATGAAATGAGCGTACGGGTGCTTAGCCGGCCATAGGGGCGGGATGCGCAAGCTGGGCATCG
649 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * * * ** *
13409942 ACTGGGTCCCCCTCTACGTGCTACCGATCCTGCT-ATCGTAACCCTCAGTCCGAATCAATCTTAG
714 GCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT-ATAACCCTCGGTCCGGTTCGATCTTAG
* *
13410006 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAC-AAACGTGTGGGCGAGCGGGCGAGCGGG
778 ATTGGGAATGAACTCCGTATGCCTAAACCAACCG-ACGAAA--------CGA---GGC-A---GG
* *
13410070 CGGGTGGGCTCTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGT
827 C----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
13410135 GGGTTTAGGCACATC
888 GGGTTTAGGCACATC
* * * *
13410150 TTCATATTTATGCTTGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGTCCCTTAAGCC
1 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
13410215 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTATGAAACTTTTTGC
66 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* ** ***
13410280 GGTTCTAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGAGACAAACTTGGTAGACGTGATCCT
131 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* ** * *
13410345 TGTATTTCTGTTGGCATGTGCAAAAACATTCAGCTAAAAACTCGGAGTGTACAAGATTTTGTGAC
196 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
13410410 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
261 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
13410475 CAAATGCTCTTTAAGGGGGTGCGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
326 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
13410540 CTAAGTAGCAGCACCCATCGCACATCTTGTGCACACACCCGCCCCGGCCTCCCCGATCGTCGGAA
391 CCAAGTACCAGCACCCATCGCACATCATGTGCACACACCC-CCCCGGCC-CCCCGATCGTCGGAA
13410605 CCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGCTCCACCGATGGTGCCCCGAC
454 CCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGCTCCA-CGATGGTGCCCCGAC
*
13410670 GAAGAAAAATGTGGCACCAACACATGCCCGA-CCCTAGCACATGCTGTCGCAACCCTCGGTCCGG
518 GAAGAAAAATGTGGCACCAACACATGCCCGAGCCC-AGCACGTGCTGTCGCAACCCTCGGTCCGG
* * * * *
13410734 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTTCGTATGCTTAAGG
582 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
13410799 CAACCCACGAAACGAGCGTGCGGGTGCTTAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
647 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* *
13410864 CGGCCGAGTCCCCCTCTGCATGGTGCCGATCCTGCTGCTATAACCCTCGGTCCGGTTCGATCTTA
712 CGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTATAACCCTCGGTCCGGTTCGATCTTA
* * *
13410929 GATTGGGAATGAACTCCGTATGCCTAAACTAACCGACGAAACGA-GCAGGCGGGAACTACGTCGG
777 GATTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGGCAGGCGGGCACTACGCCGG
13410993 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
842 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * *
13411054 ATCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATCGTCCCTTAAGCC
1 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
13411119 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGT
66 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
*
13411184 GGTTCGAGATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCT
131 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * * *
13411248 TGTGTTTTTTTTTGGCATGCACAAAAAAATTCAGTTAAAAACTTGAAGTGTACAAGATTTTGTTA
196 TGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
13411313 CCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATC
260 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
13411378 TCGAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
325 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
13411443 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCCCGGCCCCCCCAATCGCCGGA
390 GCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCCGG-CCCCCCGATCGTCGGA
** * *
13411508 ACCCCAACACTGTCGGTCAGG-----T-----T-CTCCGACGATGCTCCGACGATGGTGCCCCGG
453 ACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGCTCC-ACGATGGTGCCCCGA
* ** * * * * * ** * *
13411562 TGAAGAAAAATACGGCACCAGCACATGCTCGAGTCCAACATGTGCTACCGCAACCCTTGGTCTGG
517 CGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCACGTGCTGTCGCAACCCTCGGTCCGG
* * * * *
13411627 TCTGATCCTAGACTGGCAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTATGT
582 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
13411692 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAACCGGGGAT
647 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * **
13411757 CGACCGGGTCCCCCTCTGCGTGCTGCC-ATTCCTGCTGCTACAACCCTCGGTTAGG-TCTGATCT
712 CGGCCGAGTCCCCCTCTGCGTGCTGCCGA-TCCTGCTGCTATAACCCTCGGTCCGGTTC-GATCT
**
13411820 TAGACTT-GGAATGAACTCCGTATGCCTAAGA-CAACCGACGAAACGAGTGGGTGGGCGGGCACT
775 TAGA-TTGGGAATGAACTCCGTATGCCTAA-ACCAACCGACGAAACGA---GGCAGGCGGGCACT
* * * * * *
13411883 ACGCCGACCAGAGAGACGGGATGCTCAAGCTGTGGATCGATAGCGTGGTAGGTGGGTTTCGGCAT
835 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
13411948 ATC
900 ATC
* **
13411951 TTCATAATTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
1 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * **
13412016 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCCAAACTTTTTGC
66 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * *
13412081 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTCTGGCCCCAAACTTGGTAAACGTGATCCT
131 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * ** * ** * *
13412146 TGTATTTTTCTTTGCATGCAAAAAAAAAGTGTCCCCATTTCATATCCGTTTGAAAAAAGTGTCCC
196 TGTATTTTTGTTGGCATGCACAAAAAAA-T-T---CAGCT-AAAAAC--TCG----AAGTGT--A
* * * *
13412211 CATTTCATATCCTTGT-ATCCGTTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTACTG
247 CA----AGAT-TTTGTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
13412275 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
306 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
* * *
13412340 ATAGGGGGCCAATATAAGGGCTAAGTAGCAGCACCCATCGCACATCTTGTGCACACACCCGCCCC
371 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCC-CCCC
* *
13412405 GGTCTCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCTGGCGATGCTCCGACGATGC
435 GG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGC
*
13412470 TCCACCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCC-AACCCTAGCACGTGC
499 TCCA-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCC-AGCACGTGC
* *
13412534 TGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAA
562 TGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
13412599 TGAACTTCGTATGCTTAAGGCAACCCACGAAACGAGCGTGCGGGTGCTTAACCGGCCAGAGGGGC
627 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC
* *
13412664 GGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCATGGTGCCGATCCTGCTGCTATAACC
692 GGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTATAACC
*
13412729 CTCGGTCCGGTTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAACTAACCGACGAAACGA-
757 CTCGGTCCGGTTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAG
* *
13412793 GCAGGCGGGAACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
822 GCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
13412858 TGGGTTTAGGCACATC
887 TGGGTTTAGGCACATC
* * *
13412874 ATCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATCGTCCCTTAAGCC
1 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
13412939 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGGAACTTTTTAC
66 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
* * * *
13413004 GGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCGCAAACTTGGTAGACATGATCCT
131 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
13413069 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
196 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
13413134 CATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
261 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
13413199 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
326 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
13413264 CCAAGTACCAGCACCCATCGCACATCATGGCGCACACCACCCCCCCCGACCCCCCTGATCGTC-G
391 CCAAGTACCAGCACCCATCGCACATCAT-GTGCACA-CA-CCCCCCCGGCCCCCC-GATCGTCGG
* * * *
13413328 AACCCTAATGCC-TC---CA-G---TC-AG-G-TTCTCCGACGATGCTCCAGCAATGGTGCCCCG
452 AACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGCTCCA-CGATGGTGCCCCG
* * * *
13413382 ACGAAGAAAAATGTGGCACCAACGCATGCCTGAGCACAGCATGTGCTGTCGCAACCCTCGGTCCG
516 ACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCACGTGCTGTCGCAACCCTCGGTCCG
* * * *
13413447 ATTCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACTCCGTATGCCTAAG
581 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
13413511 TCAACCCACGAAACAAGCGTGAGGGTGCTCAGTCGACCAGAGGGGTGGGATGCGCAAGTCGGGGA
646 TCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * * * *
13413576 TCGGTCGGGTCCCCCTTTGTGTGCTGTCGATCTTGTTGC-AGTAACCCTCGATCCGGTCCGATCT
711 TCGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTA-TAACCCTCGGTCCGGTTCGATCT
* * * * *
13413640 TAG-TCTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCGGGCGGGC
775 TAGAT-TGGGAATGAACTCCGTATGCCTAAACCAACCGACG-AA--A-C--G-AGGCAGGCGGGC
**
13413704 ACTACGCCGGCCAGAGAGACGGGATGTACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
832 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
13413769 CACATC
897 CACATC
* *
13413775 TTCATATTTCTATGTGCCAATGCCATTTTTACGG-TGTGTAAATTCATACAATGGTCCCTTAAGC
1 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCT-TGTAAATTCATACAATGGTCCCTTAAGC
* *
13413839 CTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTACTTTTCA
65 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
13413885 TAAAAATTCA
Statistics
Matches: 4042, Mismatches: 482, Indels: 238
0.85 0.10 0.05
Matches are distributed among these distances:
892 5 0.00
893 444 0.11
894 129 0.03
895 4 0.00
896 2 0.00
897 228 0.06
898 50 0.01
899 3 0.00
900 365 0.09
901 506 0.13
902 4 0.00
903 52 0.01
904 612 0.15
905 35 0.01
906 16 0.00
907 4 0.00
908 406 0.10
909 60 0.01
911 10 0.00
912 8 0.00
913 45 0.01
914 1 0.00
915 9 0.00
916 201 0.05
917 3 0.00
918 4 0.00
921 2 0.00
922 1 0.00
923 278 0.07
924 262 0.06
925 1 0.00
926 8 0.00
927 281 0.07
928 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCGATCGTCGGAACC
CCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGCTCCACGATGGTGCCCCGACGAA
GAAAAATGTGGCACCAACACATGCCCGAGCCCAGCACGTGCTGTCGCAACCCTCGGTCCGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGC
CGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTATAACCCTCGGTCCGGTTCGATCTTAGATT
GGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGGCAGGCGGGCACTACGCCGGCCAG
AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
Found at i:13411673 original size:26 final size:26
Alignment explanation
Indices: 13411635--13411685 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13411625 GGTCTGATCC
13411635 TAGACTGGCAATGAACTCCATATGCT
1 TAGACTGGCAATGAACTCCATATGCT
* *
13411661 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGCAATGAACTCCATATGC
13411686 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTGGCAATGAACTCCATATGCT
Found at i:13412596 original size:26 final size:26
Alignment explanation
Indices: 13412560--13412615 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
13412550 CCGGTCCGAT
13412560 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
13412586 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13412612 CTTA
1 CTTA
13412616 AGGCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:13413497 original size:25 final size:26
Alignment explanation
Indices: 13413454--13413505 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
13413444 CCGATTCAAT
13413454 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13413480 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13413505 C
1 C
13413506 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13414293 original size:26 final size:26
Alignment explanation
Indices: 13414244--13414296 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13414234 CTGATCCAAT
**
13414244 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
13414270 CTTAGACTGGGAATGGACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
13414296 C
1 C
13414297 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:13414630 original size:795 final size:793
Alignment explanation
Indices: 13413092--13414680 Score: 2345
Period size: 791 Copynumber: 2.0 Consensus size: 793
13413082 GCATGCACAA
* * *
13413092 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATGTGAAAAAAGTGTCCCCATT
* *
13413157 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
66 TCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13413222 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
13413287 ATCATGGCGCACACCACCCCCCCCGACCCCCCTGATCGTCGAACCCTAATGCCTCCAGTCAGGTT
196 ATCATGGCG-ACACCACCCCCCCCGACCCCCCCGATCGTCGAACCCCAATGCCTCCAGTCAGGTT
* * *
13413352 CTCCGACGATGCTCCAGCAATGGTGCCCCGACGAAGAAAAATGTGGCACCAACGCATGCCTGAGC
260 CTCCGACGATGCTCCAACAATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGC
*
13413417 ACAGCATGTGCTGTCGCAACCCTCGGTCCGATTCAATCTTAGACTGGGAATGAACTCCATATGCT
325 ACAGCATGTGCTGTCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCT
* * *
13413482 TAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGAGGGTGCTCAGTCGA
390 TAGACTGGAATGAACCCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGAGGGCGCTCAGCCGA
* * * * * ** * * *
13413547 CCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTTTGTGTGCTGTCGATCTTGT
455 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTACGTGCTATCGATCCTGC
* * *
13413612 TGCAGTAACCCTCGATCCGGTCCGATCTTAGTCTAGGAATGAACTCCGTATGCCTAAGCCAACCG
520 TGCAGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACAG
* ** *
13413677 ATGAAATGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTACAAGCCGTGG
585 ACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGG
**
13413742 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAC
650 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAC
*
13413807 GGTGTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGT
715 GGTGTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
13413872 TTTCTACTTTTCAT
780 TTTCTACTTTTCAT
13413886 AAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATGTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATGTGAAAAAAGTGTCCCCATT
*
13413951 TCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTTTTTAA-GGGGTGTG
66 TCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13414015 AGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
13414080 ATCATGTGCG-CA-CA-CCCCCCTGACCCCCCCGATCGTCAGAACCCCAATGCCGT-CGGTCAGG
196 ATCATG-GCGACACCACCCCCCCCGACCCCCCCGATCGTC-GAACCCCAATGCC-TCCAGTCAGG
** * * *
13414141 TTCTCCGGTGATGGTCCAAC-ATGGTGCCTCGATGAAGAAAAATGTGGCACCAGA-ACATGCCCG
258 TTCTCCGACGATGCTCCAACAATGGTGCCCCGACGAAGAAAAATGTGGCACCA-ACACATGCCCG
* * * * * *
13414204 AGCCCAGCATGTGCTGTTGCAACCCTCTGTCTGATCCAATCTTAGACTGGGAATGAACTTCGTAT
322 AGCACAGCATGTGCTGTCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
* * *
13414269 GCTTAGACTGGGAATGGACCCCGTATGCCTAAGTCAACCCACGAAATGAA-CGTGCGGGCGCTCA
387 GCTTAGACT-GGAATGAACCCCGTATGCCTAAGTCAACCCACGAAA-CAAGCGTGAGGGCGCTCA
* * *
13414333 GCC-AGCCAGAGGGGCGGGATGTGTAAGCCGGGGATCAGCCGGGTCCCTCTCTACGTGCTATCGA
450 GCCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTACGTGCTATCGA
* * * * *
13414397 TCCTGCTGCTGCAACCCTTTG-TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
514 TCCTGCTGCAGCAACCC-TCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
13414461 CCAACAGACGAAACAAGCGGGCGTGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
578 CCAACAGACGAAACAAGCGGGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * ** *
13414526 GCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGTGCATCTTCATATTTCTCCATGCCAAT
639 ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* *
13414591 GCCATTTTTATGGCT-TGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
704 GCCATTTTTACGG-TGTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
*
13414655 AAGACGACTCGTTTTCTATTTTTCAT
768 AAGACGACTCGTTTTCTACTTTTCAT
13414681 GATTTTTGGA
Statistics
Matches: 712, Mismatches: 70, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
790 126 0.18
791 204 0.29
792 7 0.01
793 76 0.11
794 118 0.17
795 180 0.25
796 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (793 bp):
AAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATGTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGGCGACACCACCCCCCCCGACCCCCCCGATCGTCGAACCCCAATGCCTCCAGTCAGGTTC
TCCGACGATGCTCCAACAATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCA
CAGCATGTGCTGTCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTT
AGACTGGAATGAACCCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGAGGGCGCTCAGCCGAC
CAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTACGTGCTATCGATCCTGCT
GCAGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACAGA
CGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTACG
GTGTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTACTTTTCAT
Found at i:13415190 original size:26 final size:26
Alignment explanation
Indices: 13415151--13415203 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13415141 CTGGTTCGAT
13415151 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
13415177 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13415203 C
1 C
13415204 CAAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13416066 original size:26 final size:26
Alignment explanation
Indices: 13416037--13416089 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13416027 CCGGTCCAAT
13416037 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13416063 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13416089 C
1 C
13416090 CAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13416630 original size:902 final size:902
Alignment explanation
Indices: 13413886--13426649 Score: 15837
Period size: 902 Copynumber: 14.4 Consensus size: 902
13413876 TACTTTTCAT
* *
13413886 AAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATGTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
13413951 TCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTTTTTAA-GGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13414015 AGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
13414080 ATCATGTGCGCACACCCCCCTGACCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCT
196 ATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* ** * * *
13414145 CCGGTGATGGTCCAAC-ATGGTGCCTCGATGAAGAAAAATGTGGCACCAGA-ACATGCCCGAGCC
260 CCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA-ACACATGCCCGAGCC
** * * * * * *
13414208 CAGCATGTGCTGTTGCAACCCTCTGTCTGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTT
324 CAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
13414273 AGACTGGGAATGGACCCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGCCAG
389 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * * **
13414338 CCAGAGGGGCGGGATGTGTAAGCCGGGGATCAGCCGGGTCCCTCTCTACGTGCTATCGATCCTGC
454 CCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* ** * *
13414403 TGCTGCAACCCTTTGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACAG
519 TGCTACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * **
13414468 ACGAAACAAGCGGGCGTGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
584 ACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* ** *
13414533 GTGGATCGATGGGGTGGTAGGTGGGTTTAGGTGCATCTTCATATTTCTCCATGCCAATGCCATTT
649 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
13414598 TTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
714 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
13414663 TCGTTTTCTATTTTTCATGATTTTTGGAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG
779 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
13414728 AAGGATTTTTGGCCGCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
844 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAA
*
13414788 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
13414853 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * ** *
13414918 AGTTTTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCTGAGTACCAACACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
13414983 ATCATGTGCGCACACCCCTCCCCCGACCCCCCCGATCGCCGGAACCCCAGTGCTGTCAGTTAGGT
196 ATCATGTGCGCACA---C-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* * * * * * *
13415048 TCTTCGATGATGCTTCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAG
257 TCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAG
** * * *
13415113 CCCAAAATGTGCTGCCGTAACCCTCGGTCTGGTTCGATCTTAGACTGAGAATGAACTCCGTATGC
322 CCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
13415178 TTAGACTGGGAATGAACTCCGTATGCCAAAGTTAACCCATGAAACGAGCGAGCGGGCACTCAGCC
387 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
13415243 GGCCAGAGGGG-TAGGATGCGCAAGTCGGGGATC-AACCGGGTCCCCATCTACGTACTGCCGATC
452 GGCCAGAGGGGCGA-GATGCGCAAGCCGGGGATCGGA-CGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * ** * *
13415306 C-GCT-ATCGCAACCCTCAGTTTGATCCAATCTTAGACAGGAAATGAACTCCGTATGCCTAAGCC
515 CTGCTGCT-ACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
13415369 AACCGATG-AA--A-----C--G-A-----GCGGGCATTAGGTCGGTCAGAAAGACGGGATGCAC
579 AACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * *
13415418 AAGCCATGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTACCAATGC
644 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
13415483 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
709 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** *
13415548 ACGACTCGTTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTT
774 ACGACTCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * *
13415613 TTTCGGAAGGAGTTTTGGCCCAAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGGATGCATA
838 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACA
13415678 A
902 A
* *
13415679 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAACTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* ** * *
13415744 TTAGACACTTTAATTACTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13415809 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * *
13415874 AACATGTGCGCACACCCCCCGGCCCCCCTAATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTT
196 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * **
13415939 TGGCGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATG-CCAAGTTCA
261 CGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* * *
13416003 GAATGTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAG
326 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
13416068 ACTGGGAATGAACTCCATATGCCAAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCC
391 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
13416133 AGAGGGGCGAGATGCTCAAGCCAGGGATCGGACGGGTCCCCCTCTGTGTGCTGCCGAACCTGCTG
456 AGAGGGGCGAGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
* * * *
13416198 CTACAGCCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
521 CTACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
13416263 GAAACGAGCGGGCGGGCAGGTGGGCGGGCACTACGCCGGCCAGAGAGACGAGATACACAAGCTGT
586 GAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
13416328 GGATCGATAGGGAGGTTGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTT
651 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* *
13416393 ATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
716 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** *
13416458 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
781 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
** *
13416523 GGAGTTTTGGTACCAAACTTGGTAGACGTGATCCTTGTATTTTCTTTGGCATGCATAA
846 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TTTGGCATGCACAA
* * *
13416581 AAAATTTCAGCTAAAAACTCGTAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
13416646 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTCAAATCTCAAATGCTCTTTAAGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
13416711 AGTTCTCAAGCTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCCCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
13416776 ATCATGTGTGCGCAC-CCCCCCGG-CCCACCGATTGTCGAAACCCCAATGCCGACGGTCAGGTTC
196 ATCA--TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
13416839 TCC---GA--------CGATGCG-G---C-AC-----------CGG------CACATGCCCGAGC
259 TCCGGTGATGCTCCGGCGATG-GTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGC
* * * * * * *
13416871 CCAGCATGTGCTGTCGCAACCCTCGATCCGGTCCGATCTTCGACTGAGAATGAACTCTGTATTCT
323 CCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
13416936 TAGATTGGGAATGCACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCG
388 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * * *
13417001 TCTAGAGGGGATG-GATGCACAAGCCGGGGATCGGTCGGGTCACCCTCTGGGTGCTGCTGATCCT
453 GCCAGAGGGG-CGAGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCCGATCCT
** * * *
13417065 GCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATTCCTAAGCCAAC
517 GCTGCTACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
13417130 TGACGAAACGAGCGGGC-GGTAGGCGGGCGGGCACTATGCCAGCCAGAGAGGCGGGATACGCAAG
582 CGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
13417194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGCCAATGCCAT
647 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
13417259 TTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
712 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** ** **
13417324 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTTAGGATTTTTTAAAA-TTTTTC
777 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
13417388 AGAAGGAGTTTCGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCAC-A
842 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAA
13417449 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
13417514 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
13417579 AGTTCTTGAGGTTTGATGAGGGATACGGGGTCAATATAAGGGCCAAGTACCGGCACCCATCGTAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
13417644 ATCATGTGTGCACAACCCCCCCGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGATCAGGTTCT
196 ATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * * * **
13417709 CCAGTGATGCTCCGACGATGGTGCCTC-AGGGAAGAAACACGCGGCACCAGCACATGCCTTAGCC
260 CCGGTGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* * ** * * *
13417773 CAGCATGTGTTGCTGTAACCCTCAATCCGGTCTGATCTTATACTGGGAATGAACTCCGTATGGTT
324 CAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
13417838 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGAGCGCTCAGCCGG
389 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * *
13417903 CCGGAGGGGC-AGGATGCGCAAGCCGGGGATC-GACCGGCTCCCCCTCTGTGTGCTGCCGATCCT
454 CCAGAGGGGCGA-GATGCGCAAGCCGGGGATCGGA-CGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * *
13417966 GCTGCCACAATCCTCAGTCCAGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAAC
517 GCTGCTACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** ** *
13418031 CGATGAAACGAGTGGGTAGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
582 CGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
13418096 CCATGGATCGATA-GGTGGTAGGTGGGTGTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
647 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* * *
13418160 TTTTATGGCCTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
712 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
13418225 ACTCG-TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAACTTTTTC
777 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
13418289 GGAATGAGTTTTGGCCCCAAACTTGG-AGACGTGATCCTTGTATTTTGTTGGCATGCATAA
842 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAA
*
13418349 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
13418414 TCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTAAGGGGGTATG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
13418478 AGCTCTCCAGGTTTGATGAGGGATAGGGGGTCAATATAAAGGCCAAGTACCAGCACCCATTGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * * *
13418543 ATCATGTGCATACACCCCCCGGCCCCCCCGATC-ACTGGAACCCCAATGTCGTCAGTCAGGTTCT
196 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCT
* * * *
13418607 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCC
260 CCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
** * *
13418672 AGCATGTGCT---G------TC-G--C-AACC-ATC--AGTCT-GG--T---CT--G-AT-ATTA
325 AGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
13418711 GATTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTACGGGCGCTCAGCCAGC
390 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
13418776 CAGAGTGGCGAGATGCGCAAGCCAGGGATCGGCCGAG-CCCCCTCTGCGTGCTGTCAATCCTGCT
455 CAGAGGGGCGAGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
** * * * * * *
13418840 GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGACTAAACTCCGTATGCCTAAGCCAACTGA
520 GCTACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * * *
13418905 CAAAACGAGCTGGCGGACGGGCGGGCGAG-ACTACGTCGGCCAGAAAGGCGGGATGCGCAAGCCG
585 CGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
13418969 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
650 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
13419034 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACT
715 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
13419099 TGTTTTCTATATTTCACGATTTTTGAAACTGTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
780 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * ** * *
13419164 ATGAGTTTTGGCCGCAAACTTGACAAACGTTATCCTTGTATTTTTATTGGCATGCACAA
845 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAA
* * *
13419223 AAAAAGTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* **
13419288 TCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAATGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
13419353 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCAA
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
13419418 ATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTTA-GTT-T-
196 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
** *
13419480 C-----T-CT--GGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGAGCCCA
261 CGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* * * * *
13419537 GCATGTGTTGCAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
326 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
13419602 TCTGGGAATCAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGGC
391 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * *
13419667 AGAGAGG-TAGGATGCGCAAGCTGGGGATCGGTCTGGTCCCCTTCTGCGTGCTGCCGATCATGCT
456 AGAGGGGCGA-GATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * *
13419731 GCTGCAACCCTCGGTCCGGTCTGATCCTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGA
520 GCTACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
** * * *
13419796 TTAAACGAGCGGGCGGGCAGGCGGGTGGGAACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCG
585 CGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
13419861 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
650 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
13419926 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
715 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** *
13419991 CGTTTTTTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAA-TTTTTCGTG
780 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG-G
* ** *
13420055 AAAGAGTTTTGGCATCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCAC-A
844 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAA
* * * *
13420114 AAAAATTTAGCTAAAAACTCGAACTGCATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
13420179 TCAGACACTTTGATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGATGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13420244 AGTTCTCGAGGTTTGATTAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
13420308 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCATTGGAACCCCAATGCCGCCAGTCAGGTTCTC
196 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * ** * * *
13420373 CGATGATGCTCCGGC-ATGGTGCCTCGGTGAAGAAAAATGTGGCACCAACACATGTCCGAGCCCT
261 CGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* * * * * * *
13420437 GCACGTGCTGCTGTAACCCTTGATCCGGTCCGATCTTAAACTTGGAATGAACTCTGTATGCTTAG
326 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
13420502 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAACCGGCT
391 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * ** *
13420567 AGAGGGGCTG-GATACGTAAGCCGGGGATCGGTTGGGTCGCCCC-CTGTGTGCTGCCGATCCTGC
456 AGAGGGGC-GAGATGCGCAAGCCGGGGATCGGACGGGTC-CCCCTCTGCGTGCTGCCGATCCTGC
* * ** * * * *
13420630 TGCCATAACCCTCAGTCCGGTCCAATCTTAGACCGGGAATGAACTCCATATGCCTAAGCTAACTG
519 TGCTACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
13420695 ACGAAACGAGCGGCCGGGC-GGACGGGCGGGCACTAAGTCGGCCAGAGAGACGGGATACGGAAGC
584 ACGAAACGAGCGGGCGGGCAGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
13420759 CGT-GATCGATAAGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACGTGCCAATGCCATT
648 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * * * * *
13420823 TTTACGACTTGTAAATTCACAAAATGGTCCCTTAAGCCTTCATGTGAAGTATCATGGCAAGACGA
713 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * **
13420888 CTCGTTTTATATTTTTCATAATTTTTGAAAC-TTTTACGGTTCAGGATTTTTTAAAATTTTTTTA
778 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
*
13420952 GAAGGAGTTTTGGGCCCAAA-----T-----T--T--TTG-------TTGGCATGCACAA
843 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAA
*
13420991 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
13421056 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13421121 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
13421186 ATCATGTGCGCACA-CCCCCGG--CCCCCGATCGTCGGAACCCCAAGGCCGTCGGTCAGGTTCTC
196 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * *
13421248 CGGTGATCCTCCGACGATAGTGTCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGACCCCA
261 CGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* * *
13421313 GCATCTGCTGCTGCAACCCT---T--GGT-C---C---GA-T-----T----T-CGTATGCTTAG
326 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
13421355 ACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGGGTGCGGGTGCTCAGCCGGCT
391 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * ** * *
13421420 AGAGGGGCGGGACT-TGCAAGCCGGGGATCGGTCGGGTCCCCTTCTATGTGCTACCAATCCTGCT
456 AGAGGGGCGAGA-TGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * *
13421484 GTTGCGACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
520 GCTACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
13421549 TGAAACGAGCGGGC--G--GGCGGGCGGGAACTATGCGGGCCAAAGAGACGGGATGCGCAAGCCG
585 CGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
13421610 TGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTGA-GTGCCAATGCCATTT
650 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCCATTT
* **
13421674 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT-GCAAAGATAA
714 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC-AAGACGA
* * * * * *
13421738 CTCGTTTTCTATTTCTCACTATTTTTGAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTCC
778 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * **
13421803 GAATGAGTTTTAGCCCCAAACGTGGTAGACATGATCCTTGTATTTTTTTTGGTGTGCACAA
843 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAA
*
13421864 AAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * ***
13421929 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATACTTTTTAAGATTGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
13421994 AGTTCTCGAGATTTCATGAGGGATAGGGTGCCAATATAAGGGCCAGGTACCAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * **
13422059 AACATGTGAACACACCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGTTCC--CAATCAGGTTC
196 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG--CCGTCGGTCAGGTTC
* * ** * *
13422122 TCTGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAGAAATGCGACACCAACACATGCCCGAGCC
259 TCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
** * * * * * *
13422187 TGGCATGTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAGTGAACTTCGTATGCTT
324 CAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* ** * * * * *
13422252 AGATTCCGAATGAACTCAGTATGCCTAAGTTAACCCACAAAATGAGCGTGCGGGCGCTCAGCTGG
389 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * * * *
13422317 CCAGAGGGGCGGGATGCGCAAGCTGAGGATC-GACCGCTCCCCCTCTGTGTGTTGTCGATCCTAC
454 CCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* *
13422381 TG-TCACAACCCTC-GATCTGGTCTGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAAC
519 TGCT-ACAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
13422444 CGATGAAACGAGCGGGCGGGTAGGCGGTCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAG
582 CGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
13422509 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATACATGCCAATTCCAT
647 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* ** *
13422574 CTTTATTTCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
712 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * * * ** * * *
13422639 AAGCATTTTTTATTTTTAACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT
777 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
13422704 GGAACGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCCCAA
842 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAA
*
13422766 AAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
13422831 TCGGACACTTTAAGGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13422896 AGTTCTCGAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
13422961 ATCATGTGAGCAC-CCCCCC-G-CCCCCCGATC-ACGGGAACCCCAATGTCGTCGGTCAGGTTCT
196 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCT
* ** ***
13423022 CCGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATATAGCACCAACACATGCCCGAGCCC
260 CCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* * * *
13423087 AGCATGTGCTGCCGTAACCCTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTA
325 AGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
13423152 GACTAGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGC
390 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * ** *
13423217 CAAAGGGGC-AGGATGCGCAAGCTGGGAATC-GACTGGGTCCCCCTATACGTGCTATCAATCCTG
455 CAGAGGGGCGA-GATGCGCAAGCCGGGGATCGGAC-GGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * * *
13423280 CTGCCACAACCCTCGGTCTGGCCTGATCTTAGACTGGGAACGAACTCCGTATGCCTAAGCCAACC
518 CTGCTACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** ** * *
13423345 GATGAAACGAGCGACCGGGC---C-GGTAGGCACTACGCCGACCAGAGAGACGGGATGTGCAAGC
583 GACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * **
13423406 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTATGTGCCAATGCCATT
648 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * *
13423471 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAATTTTCATGGCAAGACTA
713 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
13423536 CTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTACGGTTTCGAGTTTTTTTAAAATTTTTTC
778 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGGGATTTTTTAAAATTTTTTC
* * *
13423600 GGAAGGTGTTTTGGCCCCAGACATGGTAGACGTGATCCTTGTATTTTTTTGGCATGCAC-A
842 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAA
13423660 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCCAT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-TCCCCAT
*
13423725 TTCAGACACTTTAAGGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
65 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
13423790 GAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTAGCAGAACCCACCGCA
130 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
13423855 CATGATGTGCGCACACCCCTCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGC
195 CATCATGTGCGCACA--CC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* *
13423920 TCTTCGGTGATGCTCTGGCGATGGTG-CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAG
257 TCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAG
*
13423984 -CC--CA---------G--A--------------CG------G--T--GAATGAACTCTGTATGC
322 CCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
13424011 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCAGGCACGT-AGC
387 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC-TCAGC
* * * * * *
13424075 TGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATC-GATCAGG-CCCCCTCTACGTGCTACTGATC
451 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGA-CGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
13424138 CTACTAGC-ATAACCTTCAGTCTGGT-TCAATCTTAGACT-GGAATGAACTCCGTATGCCTAAG-
515 CTGCT-GCTACAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
13424199 CAACCGACGGAACGACCAGGCGGGCCGGCGGGTGAGCACTAC-CACGGCCAGAGAGACGGGATGC
578 CAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGC-CGGCCAGAGAGACGGGATGC
13424263 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTACATGCCAAT
642 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* *
13424327 -CCATTTTTAT-TCGTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
707 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
** * ** *
13424390 AGACGAAGCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
772 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* *
13424455 TTTTCGGAACGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
837 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCAC
13424520 AA
901 AA
*
13424522 AAAAATTCAGCTAAAAACTCGAAGTGTACAAAGATTTTGTGACCATTTG-AAAAAGTGTTCCCAT
1 AAAAATTCAGCTAAAAACTCGAAGTGTAC-AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
13424586 TTCAGACACTTTAAGGGTTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGT
65 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
13424651 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
130 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
13424716 CATTATGTGCGCACACCCCCC-G-CCCCCCGATC-ACGGGAACCCCAATGCCGTCGGTCAGGTTC
195 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTC
* ** * * *
13424778 TCCGGTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATACAGCACCAACACATGCTCGAGCC
259 TCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* * * *
13424843 CAGCATGTGCTGCCGTAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
324 CAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * *
13424908 ACACTGGGAATGAACTCCATATGCCAAAATCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGG
389 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * **
13424973 CCAAAGGGG-TAGGATGCGCAAGCCGGGGATC-GACTGGGTCCCCCTATACGTGCTATCGATCCT
454 CCAGAGGGGCGA-GATGCGCAAGCCGGGGATCGGAC-GGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * * *
13425036 GCTACCACAACCCTC-GATCTGGTCTAATCTTAGACTGGGAACGAACTTCGTATGCCTAAGCCAA
517 GCTGCTACAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13425100 CCGACGAAACGAGCGGCCGGGC---C-GGCAGGCATTACGCCGGCCAGAGAGACGGGATGTGCAA
581 CCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * **
13425161 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTATGTGCCAATGCCA
646 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * * *
13425226 TTTTTATGGCTTGTAAATTCTTACAATGGTCCTTTAAGCCTTCACGTGAATTTTCAAGGCAAGAC
711 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
13425291 TACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGTTTTTTTAAAACTTTTT
776 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
13425356 CGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
841 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAA
*
13425419 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTTCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * * *
13425483 TCAGACACTTTAAGGGTTACTGGCAGTAAACCTATAAAATCTTAAATGCTCTTTAAAGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13425548 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
13425613 ATTATGTGCGCACACCCCCC-G-CCCCCCGATC-ACGGGAACCCCAATGCCGTCGGTCAGGTTCT
196 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCT
* ** * *
13425675 CCGGTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCTCGAGCCC
260 CCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
*
13425740 AGCATGTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
325 AGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * * *
13425805 GACTGAGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCACTTAGCCGGC
390 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * ** * * * * *
13425870 CAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCTTTCTGTGTGCTACCAATTCTACT
455 CAGAGGGGCGAGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * * * *
13425935 AC-GCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGA
520 GCTACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
13425999 CGAAACAAGCGGGCAGGTAGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCCGCAAGCC
585 CGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG-CGCAAGCC
** **
13426064 GTAAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTTGCCAATGCCATT
649 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CATGCCAATGCCATT
13426129 TTTATGGCTTGTAAATTCATTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
713 TTTATGGCTTGTAAATTCA-TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * ** *
13426194 AAGCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
777 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
13426259 GAAACGAGTTTTGGCCCCAAACATGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
842 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAA
*
13426321 AAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
13426386 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGATTTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13426450 AGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
13426515 ATCATGTGCGCACACCCCCC-GACCCCCCGATCGTCGGAA-CCCAATGCCGCCGGTCAGGTTCTC
196 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * **
13426578 CGGTTATGCTCCGGAGATGGCACCCCGACGAAGAAAAATGC-GCACCAACACATG-CCGAGCCCA
261 CGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
13426641 GCATGTGCT
326 GCATGTGCT
13426650 CAGACGATTT
Statistics
Matches: 10352, Mismatches: 1207, Indels: 608
0.85 0.10 0.05
Matches are distributed among these distances:
849 40 0.00
850 140 0.01
851 48 0.00
852 4 0.00
853 185 0.02
854 2 0.00
855 1 0.00
856 58 0.01
857 34 0.00
858 7 0.00
859 21 0.00
860 157 0.02
861 229 0.02
862 155 0.01
863 100 0.01
864 58 0.01
865 3 0.00
866 11 0.00
867 3 0.00
868 195 0.02
869 95 0.01
870 262 0.03
871 464 0.04
872 173 0.02
873 229 0.02
874 133 0.01
875 164 0.02
876 178 0.02
877 153 0.01
878 57 0.01
879 3 0.00
880 10 0.00
881 7 0.00
882 3 0.00
883 3 0.00
884 6 0.00
885 3 0.00
886 174 0.02
887 149 0.01
888 8 0.00
889 6 0.00
890 336 0.03
891 559 0.05
892 265 0.03
893 3 0.00
894 136 0.01
895 360 0.03
896 742 0.07
897 227 0.02
898 270 0.03
899 598 0.06
900 690 0.07
901 510 0.05
902 1280 0.12
903 325 0.03
904 10 0.00
905 3 0.00
906 105 0.01
907 202 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
CGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
AGAGGGGCGAGATGCGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
CTACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAA
Found at i:13419607 original size:26 final size:26
Alignment explanation
Indices: 13419571--13419623 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13419561 CCGGTCTGAT
*
13419571 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
* *
13419597 CTTAGTCTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
13419623 C
1 C
13419624 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:13420509 original size:26 final size:26
Alignment explanation
Indices: 13420471--13420523 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13420461 CCGGTCCGAT
* *
13420471 CTTAAACTTGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
13420497 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
13420523 C
1 C
13420524 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:13423158 original size:26 final size:26
Alignment explanation
Indices: 13423122--13423174 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13423112 TCGGTCTGAT
*
13423122 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
13423148 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
13423174 C
1 C
13423175 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13424915 original size:26 final size:26
Alignment explanation
Indices: 13424879--13424931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13424869 TCGATCTGAT
* *
13424879 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
13424905 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
13424931 C
1 C
13424932 CAAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:13425804 original size:26 final size:26
Alignment explanation
Indices: 13425775--13425827 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13425765 CCGATCCGAT
*
13425775 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
13425801 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13425827 C
1 C
13425828 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13425886 original size:896 final size:894
Alignment explanation
Indices: 13423994--13426649 Score: 4003
Period size: 896 Copynumber: 3.0 Consensus size: 894
13423984 CCCAGACGGT
* *
13423994 GAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAG
1 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
13424059 CGTGCAGGCACGTAGCTGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGA-TCAGG-CCCCCT
66 CGTGCGGGCACTTAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACT-AGGTCCCCCT
* *
13424122 CTACGTGCTACTGATCCTACTAGCATAACCTTC-AGTCTGGT-TCAATCTTAGACT-GGAATGAA
130 CTACGTGCTAC-GATCCTACTA-CACAACCCTCGA-TCTGGTCT-AATCTTAGACTGGGAATGAA
* * *
13424184 CTCCGTATGCCTAAG-CAACCGACGGAACGACCAGG-CGGGCCGGCGGGTGAGCACTAC-CACGG
191 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCCGGGCCGGC---AG-GCACTACGC-CGG
13424246 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
251 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
** * * *
13424311 TA-TTCTACATGCCAAT-CCATTTTTAT-TCGTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
316 TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCA
13424373 CGTGAAGTTTCATGGCAAGACGAAGCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTT
381 CGTGAAGTTTCATGGCAAGACGAAGCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTT
* *
13424438 CGAGATTTTTTAAAATTTTTTCGGAACGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTA
446 CGAGATTTTTTAAAATTTTTTCGGAACGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTA
13424503 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAAGATTTTGTGACCAT
511 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC-AAGATTTTGTGACCAT
13424568 TTGAAAAAGTGTTCCCATTTCAGACACTTTAAGGGTTACTGGCAGTAAACCTATAAAATCTCAAA
575 TTGAAAAAGTGTTCCCATTTCAGACACTTTAAGGGTTACTGGCAGTAAACCTATAAAATCTCAAA
13424633 TGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
640 TGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
13424698 GTACCAGCACCCATCGCACATTATGTGCGCACACCCCCCGCCCCCCGATCACGGGAACCCCAATG
705 GTACCAGCACCCATCGCACATTATGTGCGCACACCCCCCGCCCCCCGATCACGGGAACCCCAATG
13424763 CCGTCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATACAGCACCA
770 CCGTCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATAC-GCACCA
* *
13424828 ACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTTCGATCTGATCTTAGACTGG
834 ACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTGG
* * * *
13424889 GAATGAACTCCGTATGCTTACACTGGGAATGAACTCCATATGCCAAAATCAACCCACGAAACGAG
1 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
** * * * * * *
13424954 CGTGCGGGTGCTCAGTCGGCCAAAGGGGTAGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTA
66 CGTGCGGGCACTTAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACTAGGTCCCCCTC
* * *
13425019 TACGTGCTATCGATCCTGCTACCACAACCCTCGATCTGGTCTAATCTTAGACTGGGAACGAACTT
131 TACGTGCTA-CGATCCTACTA-CACAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTC
*
13425084 CGTATGCCTAAGCCAACCGACGAAACGAGC-GGCCGGGCCGGCAGGCATTACGCCGGCCAGAGAG
194 CGTATGCCTAAGCCAACCGACGAAACGAGCAGGCCGGGCCGGCAGGCACTACGCCGGCCAGAGAG
* * *
13425148 ACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTA
259 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* *
13425213 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCCTTTAAGCCTTCACGTGAATT
324 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * ** * * ** *
13425278 TTCAAGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGTTTT
389 TTCATGGCAAGACGAAGCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTT
* * *
13425343 TTTAAAACTTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTT
454 TTTAAAATTTTTTCGGAACGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTT
13425408 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAG
519 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAG
*
13425473 TGTTCCCATTTCAGACACTTTAAGGGTTACTGGCAGTAAACCTATAAAATCTTAAATGCTCTTTA
584 TGTTCCCATTTCAGACACTTTAAGGGTTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTA
13425538 AAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
649 AAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
13425603 CCCATCGCACATTATGTGCGCACACCCCCCGCCCCCCGATCACGGGAACCCCAATGCCGTCGGTC
714 CCCATCGCACATTATGTGCGCACACCCCCCGCCCCCCGATCACGGGAACCCCAATGCCGTCGGTC
13425668 AGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCT
779 AGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATAC-GCACCAACACATGCT
*
13425733 CGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGG
843 CGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTGG
* * * *
13425785 GAATGAACTCCGTATGCTTAGACTGAGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAG
1 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * **
13425850 CGTACGGGCACTTAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCTTTC
66 CGTGCGGGCACTTAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACTAGGTCCCCCTC
** * * * * ** *
13425915 TGTGTGCTACCAATTCTACTACGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCC
131 TACGTGCTA-CGATCCTACTACACAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCC
* * * * ** * *
13425980 ATATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGTAGGTGGGCGGGCACTACGTCGGCCAGAG
195 GTATGCCTAAGCCAACCGACGAAACGAGCAGGC-CG--GGCCGGCAGGCACTACGCCGGCCAGAG
**
13426045 AGACGGGATGCCGCAAGCCGTAAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
257 AGACGGGATG-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
13426110 CTATGTTGCCAATGCCATTTTTATGGCTTGTAAATTCATTACAATGGTCCCTTAAGCCTTCACGT
321 CTATG-TGCCAATGCCATTTTTATGGCTTGTAAATTC-TTACAATGGTCCCTTAAGCCTTCACGT
13426175 GAAGTTTCATGGCAAGACGAAGCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA
384 GAAGTTTCATGGCAAGACGAAGCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA
* *
13426240 GATTTTTTAAAATTTTTTCGAAACGAGTTTTGGCCCCAAACATGGTAGATGTGATCCTTGTATTT
449 GATTTTTTAAAATTTTTTCGGAACGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTT
* *
13426305 TTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
514 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-
* * * * * *
13426370 AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
578 AAAAAGTGTTCCCATTTCAGACACTTTAAGGGTTACTGGCAGTAAACCTATAAAATCTCAAATGC
* * *
13426435 TCTTT-AAGGGATTTGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTA
643 TCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* *
13426499 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTC-GGAA-CCCAATGC
708 CCAGCACCCATCGCACATTATGTGCGCACACCCCCCG-CCCCCCGATC-ACGGGAACCCCAATGC
* * * ** ** *
13426562 CGCCGGTCAGGTTCTCCGGTTATGCTCCGGAGATGGCACCCCGACGAAGAAAAATGCGCACCAAC
771 CGTCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATACGCACCAAC
13426627 ACATGC-CGAGCCCAGCATGTGCT
836 ACATGCTCGAGCCCAGCATGTGCT
13426650 CAGACGATTT
Statistics
Matches: 1595, Mismatches: 144, Indels: 39
0.90 0.08 0.02
Matches are distributed among these distances:
894 73 0.05
895 179 0.11
896 519 0.33
897 222 0.14
898 24 0.02
899 32 0.02
900 71 0.04
901 45 0.03
902 352 0.22
903 77 0.05
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCACTTAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACTAGGTCCCCCTC
TACGTGCTACGATCCTACTACACAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAACCGACGAAACGAGCAGGCCGGGCCGGCAGGCACTACGCCGGCCAGAGAGAC
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG
TGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGAAGCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTT
TAAAATTTTTTCGGAACGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGG
CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTG
TTCCCATTTCAGACACTTTAAGGGTTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAA
GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATTATGTGCGCACACCCCCCGCCCCCCGATCACGGGAACCCCAATGCCGTCGGTCAG
GTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATACGCACCAACACATGCTCGA
GCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTGG
Found at i:13427488 original size:26 final size:26
Alignment explanation
Indices: 13427452--13427504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13427442 CCTGTCTGAT
*
13427452 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13427478 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13427504 C
1 C
13427505 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13428385 original size:26 final size:26
Alignment explanation
Indices: 13428356--13428408 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13428346 CCTGTCCAAT
13428356 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
* * *
13428382 CTTATATTGGGAATGAGCTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
13428408 C
1 C
13428409 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:13428825 original size:905 final size:901
Alignment explanation
Indices: 13426801--13436538 Score: 11340
Period size: 905 Copynumber: 10.9 Consensus size: 901
13426791 GCTGCCACAA
* * * * ** * * * *
13426801 CGGGTGGGCAGGCGGGCATTACGTCGGTTAGAGAGATGGGATGCGCAAGGCATGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGG
* * *
13426866 TGGTAGGTGGGTTTCA-ACACATCTTCATATTTCTGTGTGCTAATGCCATTTTTATGGCTTGTAA
66 TGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* *
13426930 ATTTATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCATGGCAAGACGACTCATTTTCTATTT
130 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * * * *
13426994 TTCACGATTGTCGAAATTTTTAAGATTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
195 TTCATGATTTTCGAAACTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
** * * *
13427059 AAAAACTTGATAGACGTGATGCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAACT
260 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
13427124 TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCAGACACTTTAATGGCTA
325 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
13427189 CTGGCAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
390 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
13427254 GGGATAAGGGGCCAATATAAGGGCCAAGCACCAGCGCCCATCTCACATCATGTGCGCACACCCCC
455 GGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *** * ** *
13427319 CAG-CCCCCCAATCATTGGAACCCTAATGGTGCCAGTCAGGTTC-TC--C-A------GCGATGG
520 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGCGATGG
* * * * * * *
13427373 TGCCCCGACAAAGAAAAATGTGACACCAACACATGCCCGAGCCTAGCATGTGCTGCCACAACCCT
585 TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* *
13427438 CGGTCCTGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
650 CGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * *
13427503 GCCTAAGTCAACCCATGAAACAAGCATGTGGTTGCTCAGCCGACCAGAGGGGTGGGATACGCAAG
715 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * *
13427568 CC-AGGGATCGACCGGGTCCCCTTCTGTGTGTTGCCAAT-CTTCTGCTGCAACCCTCGGTCCGGT
780 CCGA-GGATTGGCCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTTCGGT
*
13427631 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
844 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG
* * * * *
13427689 CCGACGGGCGGGCGGGCACTATGCCGACCAGAGAGAC-AGGATGCGCAAGTCGTGGATCGATAGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGG
* *
13427753 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCTTTTTTATGGCTTGTAA
65 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* *
13427818 ATTCATACGATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
130 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * * *
13427883 TTCATGATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGCTTTGGC
195 TTCATGATTTTCGAAAC-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
*
13427948 CCCAAACTCGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTCA-CTAAAAA
259 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAA
* * *
13428012 CTCAAAGTGTACAAGATTTTGTGACCATTTCAAAAAAATGTCCCCATTTCAGACACTTTAATGGC
323 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
13428077 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGAGGTGTGAGTTCTCGAGGTTTGAT
388 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
13428142 GAGGGATAAGGGGCCAATATAAGGGCCAAGT-GCTGACACCCATCACACATCATGTGCGCATAAC
453 GAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGTGCGCA-CAC
* * * * * *
13428206 CCCCCGGGCCCCCCCGATCACCGGAACCCTAATGCTGTCGATCAGGTTCTTCGACAATGCTCCTG
516 CCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCC-G
* * *
13428271 CGATGGTGCCCTGGCAAAGAAAAATGTGGCACCAAG-ACATGCCCGAGCCCAGCATGTGCTGCCG
579 CGATGGTGCCCCGGCGAAGAAAAATGCGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * * *
13428335 CAACCCTCGGTCCTGTCCAATCTTAGATTGGGAATGAACTCCATATGCTTATATTGGGAATGAGC
643 CAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * *
13428400 TCCGTATGCCTAAGTAAACCCACGAAATGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCGGGAT
708 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * * * ** * *
13428465 GTGCAAGCCGATGATTAGTCGAGTCCCCCTCTATGTGCTGTCAATCCTACTTTCACAAACCTCGG
773 GCGCAAGCCGAGGATTGGCCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCGG
* * *
13428530 TTCAGTCTGATCTTAGATTGGGAATGAACTCCGTTTGCCTAAGCCAACCGACGAAATGAGCGGG
838 TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG
* * ** * * * * *
13428594 CGGGTGAGCCAGCGGGCACCACGTCGGCCAGAGAAACGAGATGCGCAAGCCATGGATCAATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGG
* * *
13428659 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGACTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
*
13428724 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
13428789 TCATGATTTTCGAAACTTTTAGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCC
196 TCATGATTTTCGAAACTTTTA-CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
*
13428854 CCAAACTTGGTAGA-TTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
260 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* **
13428918 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTTCAGACACTTTAATGGCTA
325 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
13428983 CTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGCGTTCTCGAGGTTTGATGA
390 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
13429047 GGGAT-AGAGGGCCAACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCATAACCC
455 GGGATAAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CA-CC
* * * * *
13429111 CCCCGGCCCCCCCGATCGCTGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCTCCTGCG
517 CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCC-GCG
* * * * *
13429176 ATGGTGCCTCGGTGAAGAAAAATGTGGCACCAACACATACCCGAGCCCAGCATGTGCTGCCGCAA
581 ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* *
13429241 ----C---CC--TCAG-TC-----C------T--A-TCCG-AT-CTTAGATTGGGAATGAACTCC
646 CCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * ** * *
13429280 ATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCTTCCAGAGGGGCAGGATGAG
711 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * * * *
13429345 CAGGCCGGGGATCGGCCGAGTCCCCCTCTGTGTGCTGGCAATCCTGCTGCTGCAACCCTCAGTCC
776 CAAGCCGAGGATTGGCCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTTC
* * ** **
13429410 GATCTGATCTTAGACCGGGAATGAACTCCGTATGCCTAAGCCGGCCGATAAAATGAGCGGG
841 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG
** * * * *
13429471 CGGATGGGTGGGCGGGCGCTACGCCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGG
* * *
13429536 TAGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
*
13429601 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTACTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
13429666 TCACT-ATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
196 TCA-TGATTTTCGAAAC-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
13429730 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGTATGGCACAAAACAATTCAGCTAAAAA
259 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-GCACAAAAAAATTCAGCTAAAAA
* *
13429795 CTGGAAGTGTACAAGATTTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
323 CTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
13429860 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGA
387 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
13429925 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCAC-CC
452 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * *
13429989 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-TCCAGCCATGCTCCGAT
517 CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGA-CGATGCTCCG-C
* * * *
13430053 GATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCATGTGCTACCGCA
580 GATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
13430118 ACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACT
645 ACCCTCGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
13430182 CCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATG
709 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * ** ** * * * *
13430247 CACAAGTCGGGGATCGGCTTGGTCCCCCTCTCCGTGTTGCCGATCCTACTACCGCAACCCTCGGT
774 CGCAAGCCGAGGATTGGCCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCGGT
* * * *
13430312 CCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGTCCAAACT-A----G
839 TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-TGAGCGGG
* * * * *
13430371 CTGGCGGGCGGGCGGGCACTAAGCCGGCCAAAGAGAC-ATGACGCGCAAGCCATGGATCGATAGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGG
* * *
13430435 ATGGTAGGTGGGTTTAGGCTTC-TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
65 GTGGTAGGTGGGTTTAGGC-ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
*
13430499 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTT
129 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
13430564 TTTCATGAATTTT-GAAAATTTTACGGTTTGGGA-TTTTTAAAATTTTTTTGGAAGGAGTTTTAG
194 TTTCATG-ATTTTCGAAACTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* *
13430627 CCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTGGTATGCACAAAAAAATTCAGCTAAAAA
258 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
13430691 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCGGACACTTTAATGGC
323 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
13430756 TACTGGCAGCAAGCCTATAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
388 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
13430821 GAGGGAT-AGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGTACAAC
453 GAGGGATAAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-AC
* * * * * * **
13430885 CCCCTGG-GCCCCCAATCGCTGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGC
516 CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCC-GC
* * * * * *
13430949 GATGGTGCCCCGGTGAAGAAAAATGCAGCATCAACACATGCCCCGACGCCCAGTATGGTGCTGGT
580 GATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATG-CCCGA-GCCCAGCAT-GTGCT-GC
* * * * *
13431014 CGTAAACCCTCGGT-CGGTCCTAATCCTAGACTGGGAATGGAACTCCGTATGCCTTAGACAGGGA
641 CG-CAACCCTCGGTCCTGTCC-GATCTTAGACTGGGAAT-GAACTCCGTATG-CTTAGACTGGGA
* *
13431078 ATAGAACTCCGTAATGCGCTAA-TCAACCCCACGAAATGGAGCGTGC----G---AG--TG-CAG
702 AT-GAACTCCGT-ATGC-CTAAGTCAA-CCCACGAAA-CGAGCGTGCGGGTGCTCAGCCGGCCAG
* ** *
13431132 AGGGGCGGGATGCGCAA-CTC-AGGGATCGATCGGGT-CCCCTCTG-GCG-TGCCATCGATCCTG
762 AGGGGCGGGATGCGCAAGC-CGA-GGATTGGCCGGGTCCCCCTCTGTGTGCTGCCA---ATCCTG
** * * * *
13431192 CTATCACAACCCTC-GATCGGGTCTGATCTGAGACTGAGAATGAACTCCGTATGCCTAAGCCAAC
822 CTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
13431256 CGATGAAATGAGTGGA
886 CGACGAAATGAGCGGG
* *
13431272 CGGGCGGGCGGGCGGGCACGACGCCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGG
* *
13431337 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
*
13431402 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
13431467 TCAGGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATCTTGGTC
196 TCATGATTTTCGAAAC-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
*
13431532 CCAAACTTGGTAGACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
260 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* ** *
13431597 CGAAGTGTACAAGTTTTTGTGGTCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTA
325 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
13431662 TTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGA
390 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
13431726 GAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCC
455 GGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
13431790 CTG-CCCCCCGATCGCCGGAA-CCCAATGTCGCCGGTTTCAGGTTC-TCTGACGA---T---CGT
520 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGG--TCAGGTTCTTC-GACGATGCTCCGCGA
* * * *
13431846 TGGTGCCCGCGGTGAAAGAAAAATGCTGCACCAGCACAT-CCCAAG-CCAGCATGTGCTGCCGTA
582 TGGTGCCC-CGGCG-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * *
13431909 CCCCTCGGTCGGCAGTCCTTATCTTAGACTGGGAATGGGTAAACTCCATATGCTTTAGACTGGGA
645 ACCCTCGGTC--CTGTCC-GATCTTAGACTGGGAAT--G--AACTCCGTATGC-TTAGACTGGGA
* * * **
13431974 ATG-ACTCCGTATGCCT-AG-C-A-CCATG-AACTAGCGTGCGGGCCGCTCAGTGGGCCATGAGG
702 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-TGCTCAGCCGGCCA-GAGG
* ** * * * *
13432033 GG-GGAGATGCACAATTTCGGGGATCT-ACCGGGT--CCCTCTGTGTGCTGCCAACTCTTGCTGT
765 GGCGG-GATGCGCAA-GCCGAGGAT-TGGCCGGGTCCCCCTCTGTGTGCTGCCAA-TCCTGCTGC
* ** * * * *
13432094 CGCAACCCTCAG-TCTGGTCCAATCTTAGACTAGGAATCGGA-TCTGTATGCCTAGGCCAA-CGA
826 CGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAAT-GAACTCCGTATGCCTAAGCCAACCGA
*
13432156 CGAAACGAGCGGG
889 CGAAATGAGCGGG
** * *
13432169 C-GGC-GGCGTTACGGGC-CTTTGCCGCCGGCCAGAGAGACGAGATGTGCAAGTCCGTGGATCGA
1 CGGGCGGGCG-GGCGGGCAC--T-ACGCCGGCCAGAGAGACGAGATGCGCAAG-CCGTGGATCGA
*
13432231 TAGGGTGGTA-GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
61 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
*
13432295 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
126 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
13432360 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCGGAAGAAGTTT
191 ATTTTTCATGATTTTCGAAAC-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
13432425 TGGCCCCAAACTTGGAAGAGGTGATCCTTGTATTTTTGTTGGTATGCGA-AAAAAAATTCAGCTA
255 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTA
*
13432489 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAA
319 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
13432554 TGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
384 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
13432619 TGATGAGGGAT-AGGAGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
449 TGATGAGGGATAAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * *
13432683 CA---CCCAGCACCCCACGATCGGCGTGGAACCCCCATGCCG-C-GTCAGGGTCCTCCGACGATG
513 CACCCCCCGGC-CCCCCCGATC-GC-CGGAACCCCAATGCCGCCGGTCA-GGTTCTTCGACGATG
*
13432743 CTCCGACGATGGTGCTCACCGGCGAA-AGAAAATGCGGCACCAGCACATGCCTGAGCCGCAGCAA
574 CTCCG-CGATGGTGC-C-CCGGCGAAGA-AAAATGCGGCACCAGCACATGCCCGAGCC-CAGC-A
* *
13432807 TGTGCTGCCGTAA-CCT-GCGTTC-GATCCGATCTTAGACTGGGAATGAACTCC--ATGCTTTAG
633 TGTGCTGCCGCAACCCTCG-GTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGC-TTAG
* * * *
13432867 ACTGGAAATGAACTGCCGTATGCCCTAAGTCAATCCCACGAAACGAGCTTGCGAG-CCTTCAGCC
695 ACTGGGAATGAACT-CCGTATG-CCTAAGTCAA-CCCACGAAACGAGCGTGCGGGTGC-TCAGCC
* * * * * * * * * *
13432931 AGTCCAGAGGGGCCGGATGTGC-AGCCGGGGAATTGGCGCCTGGTCTCTCTCTATGTGCCTACCG
756 -GGCCAGAGGGGCGGGATGCGCAAGCCGAGG-ATT-G-GCCGGGTCCCCCTCTGTGTG-CTGCCA
* * * **
13432995 ATCTTGCTACCGC-AGCCTCGG-TCTGGTCAAATACTTAGACTAGGG-ATGAACTCCGTATGCCT
816 ATCCTGCTGCCGCAACCCTCGGTTC-GGTCTGAT-CTTAGACT-GGGAATGAACTCCGTATGCCT
* ** *
13433057 AAACCAATAGACGAAA--A--GAG
878 AAGCCAACCGACGAAATGAGCGGG
* * * * *
13433077 CGGGCGGGCGGGCGGGCACTATGCATGGCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGG
1 CGGGCGGGCGGGCGGGCACTACGC-CGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGG
* **
13433142 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGTTATTTTTATGGCTTGTAA
65 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * * *
13433207 ATTCCTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCCTTTTCTACTT
130 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * **
13433272 TTCACGATTTTCAAAACTTTCTGCGGTTTGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGC
195 TTCATGATTTTCGAAACTTT-TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
*
13433337 CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC--AAAAA--CA--T------
259 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
13433390 TCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCT
324 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
13433455 ACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
389 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * * *
13433520 AGGGATAGGGGGCCAATATAAGGGCCATGCACCAGCACCCATCGCACATCTTGTGGGCACA-CCC
454 AGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* *** * * * *
13433584 CCTG--CCCCCGATCATTGGAACCCCAATGCCGTCGGTCAGGTTC-TCCAGCAATGCTCCGGCCA
519 CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGA-CGATGCTCC-GCGA
* * *
13433646 TGGTG-CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTACTGCCGCAAC
582 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* *** * * * * *
13433710 CCTTGGTCAAAT-TGCTCCTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGAACTCCG
647 CCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * *
13433774 TATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCAGCTAGAGGGGCGGGATGCGC
712 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGC
** * * * * * *
13433839 AAGTTGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCCGAATCCTACTGCCGCAACCCTTGGTTC
777 AAGCCGAGGATTGGCCGGGTCCCCCTCTGTGTGCTGCC-AATCCTGCTGCCGCAACCCTCGGTTC
* * * *
13433904 AGTC-CATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAATGAGCGGG
841 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG
* * * * * * * *
13433964 TGGGTGGGCCGACGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGTG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGG
* *
13434029 TGGTTGGT-GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
13434093 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCG-TTTATATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
13434157 TCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAATTTTTTTTGGAAGGAGTTTTAGGT
196 TCATGATTTTCGAAAC-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGC
* * *
13434222 TCCAAACTTGGTAGACGTTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATT-ATTTCTAAA
259 CCCAAACTTGGTAGACG-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA--GCTAAA
* * *
13434286 AAGTAGAAGTGGTACAAGATTTTGTG-CCATTTGAAAAAAGTGT--CCATTTCAG-TACTTTAAT
321 AACTCGAAGT-GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
13434347 -GCTACTGGCAGCAAACCTGTAAAAATCTCAAATGCTCTTTAAGGTTGGTGTGAGTTCTCGAGGT
385 GGCTACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGG-GGGTGTGAGTTCTCGAGGT
* * ** *
13434411 TTGATGAGGGATAGGGGGCCAATATAAGGGCGC-AGCACCAGCACCCATTACACATCATGTGTGC
448 TTGATGAGGGATAAGGGGCCAATATAAGGGC-CAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * ** * *
13434475 ACACCCACCCCGGCCCCCCTGATTGCCGAAACCCCAATACCATCGGTCAGGTTCTCCGAAGATG-
512 ACA-CC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGC
* * ** * *
13434539 ---GC-A-----CCCCGACGATGAAAAATGCAACACCAGCACATGCTCGATCCCAGCATGTGCTG
575 TCCGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
13434595 GCGTAACCCAT-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAA
640 CCGCAACCC-TCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAA
* * * * *
13434658 TAAACTCCGTATGCCTAAGTCAACCCAAAGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAAGGG
703 TGAACTCCGTATGCCTAAGTCAACCC-ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGG
* * * * ** ** * *
13434723 CGGGATGCGCAAGCC-AGGGATCGACCGAGTCCCACTCTGCATGCTATCATTCCGGCTGCCGCAA
767 CGGGATGCGCAAGCCGA-GGATTGGCCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAA
* * ** * * *
13434787 CCCTCGGTCCGATCCAATCCTAGACGGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
831 CCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG
**
13434852 AATGGG
896 AGCGGG
* * * *
13434858 CGAGCAGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGG
* * *
13434923 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTTTGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
*
13434988 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
13435053 TCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTATAATTTTTTCGAAAGGAGTTTTGGCC
196 TCATGATTTTCGAAAC-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * * *
13435118 CCAAACTTGGTAAACGTGATCCTTGTATTTTTCTTGGAATGCACAAAACATTTCAGCTAAAAACT
260 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
13435183 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
325 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
13435248 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
390 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
13435313 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
455 GGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
** * *
13435378 CCGGCCCCTTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC-TCTGATGATGCTCTGACGA
519 CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTC-GACGATGCTCCG-CGA
* * * * *
13435442 TGGTGCCCCGGTGAAGAGATATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCCGCCGCAAC
582 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * *
13435507 CCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCG
647 CCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* ** * * * * * * *
13435572 TACGCCTAAGTCAACCCGTGGAATGAGCGTGCGGGGGCTCAGCTGGCCAAAGGGGCGGGTTACGC
712 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * ** * *
13435637 AAGCTGAGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCATAACCCTTGGTCCG
777 AAGCCGAGGATTGGCCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTTCG
** * * * * * *
13435702 GTCCAATCTTAGACTTGGGAATGAACTCTGTATGCCTAAGCCAAACAACAAAACGAGTGGG
842 GTCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG
* * ** *
13435763 CAGGCGGGCGGGCGGGCACTACGTCAACCAGAGAGACGAGATGCGCAAGCCGTGGATCAATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGG
* * * * * * *
13435828 TGGCAAGTGGGTTCAGGCACATCCTCATATTTATACGTACCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* * *
13435893 TTTATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
13435958 TCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCC
196 TCATGATTTTCGAAAC-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
13436023 CCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACT
260 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
13436088 CAAAGTGTACAAGATTTTGTGACCATTTGTAAAAAGTATCCCCATTTCAGACACTTTAATGGCTA
325 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
13436153 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTTGAGGTTTGATGA
390 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
13436218 GGGATAAGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCC
455 GGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * * *
13436283 CAG-CCCTCCGATCGTCAGAACCCCAATGCCACCTGTCAGG---TT---C--T-CT-AGCGATGG
520 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGCGATGG
** * * * *
13436337 TGCCCCGGCGAAGAAAAATAAGACACCAGCACATGCTCGAGCCCAGTATGTGCTGCCGTAACCCT
585 TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
13436402 CGAT-CTGGTCTGATCTTAGAGTGGGAATGAACCCCGTATGCTTAGACTGGGAATGAACTCCGTA
650 CGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * *
13436466 TGCCTAA-CCTAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCA
714 TGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
13436530 AGCCGAGGA
778 AGCCGAGGA
13436539 GTTTTGGCCC
Statistics
Matches: 7630, Mismatches: 932, Indels: 572
0.84 0.10 0.06
Matches are distributed among these distances:
877 421 0.06
878 142 0.02
879 39 0.01
880 85 0.01
881 76 0.01
882 7 0.00
883 40 0.01
884 84 0.01
885 134 0.02
886 97 0.01
887 56 0.01
888 161 0.02
889 85 0.01
890 302 0.04
891 58 0.01
892 254 0.03
893 202 0.03
894 306 0.04
895 427 0.06
896 468 0.06
897 270 0.04
898 512 0.07
899 181 0.02
900 254 0.03
901 248 0.03
902 101 0.01
903 376 0.05
904 777 0.10
905 958 0.13
906 72 0.01
907 50 0.01
908 254 0.03
909 38 0.00
910 37 0.00
911 44 0.01
912 14 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCATGATTTTCGAAACTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGCGATGGT
GCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
GGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
CGAGGATTGGCCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTTCGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG
Found at i:13430188 original size:26 final size:26
Alignment explanation
Indices: 13430137--13430189 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13430127 CTGGTCTGAT
* *
13430137 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13430163 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13430189 C
1 C
13430190 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13433760 original size:26 final size:26
Alignment explanation
Indices: 13433728--13433778 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13433718 AAATTGCTCC
*
13433728 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGAGAATGAACTCCATATGCT
*
13433754 TAGACTGAGAATGAACTCCGTATGC
1 TAGACTGAGAATGAACTCCATATGC
13433779 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCATATGCT
Found at i:13434648 original size:26 final size:26
Alignment explanation
Indices: 13434619--13434671 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13434609 CCGGTCCGAT
*
13434619 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
13434645 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
13434671 C
1 C
13434672 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:13435553 original size:26 final size:26
Alignment explanation
Indices: 13435524--13435573 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13435514 CCGGTCCTAT
13435524 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13435550 CTTAGACTGGGAATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
13435574 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13436452 original size:26 final size:26
Alignment explanation
Indices: 13436416--13436468 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13436406 CTGGTCTGAT
*
13436416 CTTAGAGTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
13436442 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
13436468 C
1 C
13436469 CTAACCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:13438318 original size:863 final size:872
Alignment explanation
Indices: 13436535--13441061 Score: 4391
Period size: 863 Copynumber: 5.1 Consensus size: 872
13436525 GCGCAAGCCG
* **
13436535 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
1 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCACATGCACAAAAAAAT
*
13436600 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAGGTGTTCCCATTTCAGAC
66 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAGGTGTCCCCATTTCAGAC
13436665 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
131 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
13436730 CGAGGTGTGATAAGGGATAGGGGGCCAATATAAGGGTCAGGTACCAGCACCCATCGCACATCATG
196 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
13436795 CGCGCAGA--CC-CCCC-G-CCCCCCGATCGACGAAACCCCGAATGCCGTCGGTTAGG---TTC-
261 TGCGCACACCCCTCCCCGGACCCCCCGATCGTCGGAACCCC-AATGCCGTCGGTCAGGCTCTTCG
* *
13436851 ----T-C-C-GGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
325 GTGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAG-CC-GC
* * ** ** *
13436909 ATGCACTGTCGCCACCAGCGGTCCGGTCCGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
388 ACGCACGGT-GGAATGAAC--TCC-GT-C-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * ** * * * * *
13436973 TCAACCCACAAAATGAGCGTGCGGGCGCTAAGCCGGCCAAAAGGG-TAGGATGCGCAAGCCGGGG
447 TCAAACCACGAAACGAGCGTGCAGGCGCGCAGCTGGCCAGAGGGGCGA-GATGCGCAAGCCGAGG
* * * * * * * *
13437037 ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCATACTACCGCAACCCTCGATCCGG-TCTGATC
511 ATCGGTCAGGCCCCCCTCTACGTGCTGCTGATCCTACTACCGCAACCCTCGGTCTGGTTC-AATC
** *
13437101 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAA--A--CAAGCGGGCAGGCGGG
575 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGACGCGGGCGGGCGGGCGGG
* * *
13437161 CACTAC-GTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
640 CACTACACTCGGCCAGAGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
13437225 GGCACATATTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAACTCATACAATGGTCC
705 GGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * * *
13437290 CTTAAG-CCTTCACGTAAAGTTTCATGGCAAGACGAGTCCTTTTTTATTTTTCAAGATTGTCAAA
770 CTTAAGCCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
* * * *
13437354 ACTTTTTGCGGTTCGAGATTTTTGAAAAATTTTTTGAA
835 ACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTTGGA
* * ** *
13437392 AGGAGTTTTTGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAAT
1 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCACATGCACAAAAAAAT
* * * * *
13437456 TCAACTAAAAACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGA
66 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTG-AAAAAGGTGTCCCCATTTCAGA
13437521 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TCTTAAGGGGGTGTGAGTT
130 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT-TTAAGGGGGTGTGAGTT
* * *
13437585 CTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTAGCAGCACCCACCGCACATCA
194 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
13437650 TGTGCGCACACCCCTCCCCGG-CCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGCTCTTC
259 TGTGCGCACACCCCTCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGCTCTTC
* *
13437714 GGTGATGCTCTGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCC-CA
324 GGTGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCGCA
*
13437778 -G-ACGGT-GAATGAACTCCGT-ATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAACC
389 CGCACGGTGGAATGAACTCCGTCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACC
13437839 ACGAAACGAGCGTGCAGGCGCGCAGCTGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTCA
454 ACGAAACGAGCGTGCAGGCGCGCAGCTGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTCA
* * *
13437904 GGCCCCCCTCTACGTGCTGCTGATCCTACTACCGTAACCCTCGGTTTGGTTCAATCTTAGACTGG
519 GGCCCCCCTCTACGTGCTGCTGATCCTACTACCGCAACCCTCGGTCTGGTTCAATCTTAGACTAG
13437969 GAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGA-GCGGGCGGGCGGGCGGGCACTAC-CT
584 GAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGACGCGGGCGGGCGGGCGGGCACTACACT
* * *
13438032 CGGCCAGAGGGATGGGATGCGCAAGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCATGTCT
649 CGGCCAGAGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCT
* *
13438097 TCATATCTT-TGTATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAG-C
714 TCATAT-TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
13438160 CTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT-
778 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTG
*
13438224 AGGTTCGGGATTTTTTAAAATTTTTTTGGA
843 AGGTTCGAGATTTTTTAAAATTTTTTTGGA
* * *
13438254 AGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTTCACCTGCACAAAAAAAT
1 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCACATGCACAAAAAAAT
13438319 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAGGTGTCCCCATTTCAGAC
66 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAGGTGTCCCCATTTCAGAC
13438384 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
131 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * *
13438449 CGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTAGCAGAACCCACCGCACATGATG
196 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*
13438514 TGCGCACACCCCTCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGCTCTTCGG
261 TGCGCACACCCCTCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGCTCTTCGG
13438579 TGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC-CA-G
326 TGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCGCACG
*
13438642 -ACGGT-GAATGAACTCTGT-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCAC
391 CACGGTGGAATGAACTCCGTCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCAC
* * * *
13438704 GAAACGAGCGTGCAGGCACGTAGCTGGCCAGAGGGGCGAAATGCGCAAGCCGAGGATCGATCAGG
456 GAAACGAGCGTGCAGGCGCGCAGCTGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTCAGG
* ** * * *
13438769 CCCCCCTCTACGTGCTACTGATCCTACTACCATAACCTTCAGTCTGGTTCAATCTTAGACTGGGA
521 CCCCCCTCTACGTGCTGCTGATCCTACTACCGCAACCCTCGGTCTGGTTCAATCTTAGACTAGGA
* * *
13438834 ATGAACTCCGTATGCCTAAGCCAACCGACGGAACGACCGGCGCGGCCGGTGGGCGAAGCACTACA
586 ATGAACTCCGTATGCCTAAGCCAACCGACGGAACGA-C-GCG-GGCGGGCGGGCG-GGCACTACA
* * *
13438899 CCCGGCCAGAGGGACGGG-TGCGC-AGCCGTGGATC-ATAGCGTGGTAGGTGGGTTTAGGGCATG
647 CTCGGCCAGAGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA-GGCATA
* *
13438961 TCTTCATATCTCTGGCCAATGCCAATTGCCATTTTTAATGGCTTTTAAA-TCATTACAATGG-CC
711 TCTTCATATTTCT-G-C-ATGCCAA-TGCCATTTTT-ATGGCTTGTAAATTCA-TACAATGGTCC
* * *
13439024 CATAAGCCCTTCACATGAAGTTTCATGGCAAGAACGACTCGTTTTCTAATTTTTCACGATTTCCA
770 CTTAAGCCCTTCACGTGAAGTTTCATGGCAAG-ACGACTCGTTTTCT-ATTTTTCACGATTTTC-
*
13439089 AAAACTTTTTGGCGGTTCGAGATTTTTT--AATTTTTTTGGA
832 AAAACTTTTT-GAGGTTCGAGATTTTTTAAAATTTTTTTGGA
* *
13439129 AGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGGTATTTTTGTTCACCTGCACAAAAAAA
1 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-GTATTTTTGTTCACATGCACAAAAAAA
* *
13439194 TTCAGCTAAAAAACTCGAAGTGTACAAGATGTTGGTGGCCATTTGAAAAAGGT-TCGGCCCATTT
65 TTCAGCT-AAAAACTCAAAGTGTACAAGAT-TTTGTGGCCATTTGAAAAAGGTGTC--CCCATTT
*
13439258 CCGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
126 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
13439323 GTTCTCGAGGTTTTATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
191 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
13439388 TCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCGACCCCTTCGATCGTCGGAA
256 TCATGT----G-------CGCACA-C-----C-C-C-TCCCCG--GACCCC-CCGATCGTCGGAA
* * * ** *
13439453 CCCCAATGCCATCGTTCAGGTTC-TCGAACGATGCTCCGGCGATGGTG-CCCGACGAAGAAAAAT
298 CCCCAATGCCGTCGGTCAGGCTCTTCG-GTGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAAT
*
13439516 GCGGCACCAGC-CAATGCCCCAAGCCCCAGCATGTGCTGTCGAAACCTTCGTTCCAATCTGATCT
362 GCGGCACCAACAC-ATG-CCC--G----AGC-----C-G-C---A----CG---C-A-C-G----
* * *
13439580 TAGAATTGGGGAATGTACTCCGTAATGCTT-GACTGGGAATGAACTCCGTAATGCCTAAGTCAAC
395 --G---T--GGAATGAACTCCGTCATGCTTAGACTGGGAATGAACTCCGT-ATGCCTAAGTCAAA
* * ** * * *
13439644 CCACGAAACAAGCGTGCGGGCGTTCA-CTCCAGCCAAGACGGGGCGGGATGCGCAAGGCCGGGGA
452 CCACGAAACGAGCGTGCAGGCGCGCAGCT--GGCC-AGA-GGGGCGAGATGCGCAA-GCCGAGG-
** * * * ***
13439708 ATC-GTC-GGGTCCCCTC-ACATGCTGTTGATCCTACTAACGCAACCCTCGGTCTGGTTTGCTC-
511 ATCGGTCAGGCCCCCCTCTACGTGCTGCTGATCCTACTACCGCAACCCTCGGTCTGGTTCAATCT
* *
13439769 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACCGCAGGCGGGCGGGCGGGTTT
576 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAA-CG-A--C--GCGGGCGGG--C
* *** *
13439834 GGGCGGGCACTACGC-CGGCCAGAGAGGACGGGATGCGCAAGCCACAAGATCGATA-AGTGGTAG
633 GGGCGGGCACTACACTCGGCCAGAG-GGACGGGATGCGCAAGCC-GTGGATCGATAGGGTGGTAG
* *
13439897 GTGGGTTTAGGC-TCAATCTTCATATTTCTGCCTGCCAATGCCAATTTTTATGGCATGT-AATTC
696 GTGGGTTTAGGCAT--ATCTTCATATTTCTGCATGCCAATGCC-ATTTTTATGGCTTGTAAATT-
* *
13439960 CATAC-ATGGTCCCTTAAGCCCTACACGTGAAAGTTTCATGGCAACGACGACTCATTTTCTATTT
757 CATACAATGGTCCCTTAAGCCCTTCACGTG-AAGTTTCATGGCAA-GACGACTCGTTTTCTATTT
* * * *
13440024 TTCACGATTTTAAAAACTTTTTAACGGTTCGGGGA-TTTTTAAAATTTTTTCGGA
820 TTCACGATTTTCAAAACTTTTTGA-GGTTC-GAGATTTTTTAAAATTTTTTTGGA
* * *
13440078 AGGAG--TTGGACCC-GACTTGGTAGAACGTGATCC-TG--TTTTTGTT-GCATGCA-AAAAAAA
1 AGGAGTTTTGGCCCCAAACTTGGTAG-ACGTGATCCTTGTATTTTTGTTCACATGCACAAAAAAA
* * * *
13440135 TACAGCTAAAAAACTC-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCGATTTC-
65 TTCAGCT-AAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAGGTGTCCCC-ATTTCA
*
13440198 GACGACTTT-ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
128 GAC-ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
13440262 TTCTCGA-GTTTTATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCACACAT
192 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC----A--AG------T---AC--
*
13440326 CATGTGCGCGCACCCATCGCACATCATGTGTGCGCACCCATCACACATCATGTGCGCCCCCCCTG
240 CA-------GCACCCATCGCACATCA--TGTGCGCA--CA-C-C-C--C---T------CCCCGG
* ** * * * * * * *
13440391 GCCCCCCGATCCCCGGAACACCAATGCCGGCGGTCAGGTTCTCCGATGATGCT-TCGGTGATAGT
280 ACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGCTCTTCGGTGATGCTCT-GGCGATGGT
* * * *
13440455 GCCCTGATGAAGAAAAAT-CTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTATCGTAACCCT
344 GCCCCGACGAAGAAAAATGC-GGCACCAACACA---T---GCCC-G-A---GC---CG-----CA
* *
13440519 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT-ATGCTTAGACTGAGAATGAACTTCGTA
389 C-G--C-A--CG------G--T-GGAATGAACTCCGTCATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * ** * *
13440583 TGCCTAAGTCAACCCACAAAATGAGCGTACGGGCACTTAGCCGGCCAGAGGGGCGGGATGCGCAA
439 TGCCTAAGTCAAACCACGAAACGAGCGTGCAGGCGCGCAGCTGGCCAGAGGGGCGAGATGCGCAA
* * * ** ** * * *
13440648 GCCGGGGATCGGCCAGGTCCCTTTCTGTGTGCTACCGATTCTACTACCGCAACCCTCGGTCTGGT
504 GCCGAGGATCGGTCAGGCCCCCCTCTACGTGCTGCTGATCCTACTACCGCAACCCTCGGTCTGGT
* * * * * * *
13440713 CCGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAC-AAGCGGGCAGGTA
569 TCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGACGCGGGC--G--
* * * * **
13440777 GGTGGGCGGGCACTAC-GTCGGCCAGAGAGACGGGATGCGCAAGCTGTAAATCGATAGGGTGGTA
630 GGCGGGCGGGCACTACACTCGGCCAGAGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* ***
13440841 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
695 GGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
13440906 ACAATGGTCCTTTAAG-CCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
760 ACAATGGTCCCTTAAGCCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
** ** * * ***
13440970 GATTTTTGAAACTTTTTGCCGTTCGGGTTTTTTTAAAATTTTTTCAAA
825 GATTTTCAAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTTGGA
13441018 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
1 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
13441062 GGTTGGCATG
Statistics
Matches: 3138, Mismatches: 298, Indels: 380
0.82 0.08 0.10
Matches are distributed among these distances:
856 46 0.01
857 201 0.06
858 2 0.00
859 174 0.06
860 25 0.01
861 21 0.01
862 245 0.08
863 563 0.18
864 5 0.00
866 27 0.01
867 38 0.01
868 16 0.01
869 17 0.01
870 10 0.00
871 65 0.02
872 44 0.01
873 13 0.00
874 15 0.00
875 59 0.02
876 33 0.01
877 37 0.01
878 21 0.01
879 135 0.04
883 1 0.00
890 6 0.00
891 1 0.00
896 1 0.00
897 1 0.00
898 1 0.00
899 5 0.00
900 1 0.00
901 37 0.01
902 52 0.02
904 1 0.00
908 3 0.00
913 1 0.00
916 1 0.00
919 1 0.00
924 1 0.00
929 1 0.00
930 1 0.00
931 1 0.00
937 33 0.01
938 67 0.02
939 31 0.01
940 42 0.01
941 61 0.02
942 35 0.01
943 80 0.03
944 93 0.03
945 84 0.03
946 73 0.02
947 68 0.02
948 83 0.03
949 102 0.03
950 54 0.02
951 52 0.02
952 77 0.02
953 35 0.01
954 8 0.00
955 13 0.00
956 47 0.01
957 31 0.01
958 4 0.00
959 6 0.00
960 1 0.00
961 21 0.01
962 4 0.00
963 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (872 bp):
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCACATGCACAAAAAAAT
TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAGGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCTCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGCTCTTCGG
TGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCGCACG
CACGGTGGAATGAACTCCGTCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCAC
GAAACGAGCGTGCAGGCGCGCAGCTGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTCAGG
CCCCCCTCTACGTGCTGCTGATCCTACTACCGCAACCCTCGGTCTGGTTCAATCTTAGACTAGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGGAACGACGCGGGCGGGCGGGCGGGCACTACACTCG
GCCAGAGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTC
ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGAGG
TTCGAGATTTTTTAAAATTTTTTTGGA
Found at i:13439427 original size:24 final size:24
Alignment explanation
Indices: 13439368--13439417 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
13439358 TAAGGGCCAA
13439368 GTACCAGCACCCATCGCACATCAT
1 GTACCAGCACCCATCGCACATCAT
13439392 GTACCAGCACCCATCGCACATCAT
1 GTACCAGCACCCATCGCACATCAT
13439416 GT
1 GT
13439418 GCGCACACCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.28, C:0.40, G:0.14, T:0.18
Consensus pattern (24 bp):
GTACCAGCACCCATCGCACATCAT
Found at i:13440343 original size:24 final size:24
Alignment explanation
Indices: 13440311--13440382 Score: 126
Period size: 24 Copynumber: 3.0 Consensus size: 24
13440301 CCAAGTACCA
13440311 GCACCCATCACACATCATGTGCGC
1 GCACCCATCACACATCATGTGCGC
* *
13440335 GCACCCATCGCACATCATGTGTGC
1 GCACCCATCACACATCATGTGCGC
13440359 GCACCCATCACACATCATGTGCGC
1 GCACCCATCACACATCATGTGCGC
13440383 CCCCCCTGGC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.24, C:0.40, G:0.18, T:0.18
Consensus pattern (24 bp):
GCACCCATCACACATCATGTGCGC
Found at i:13440562 original size:26 final size:26
Alignment explanation
Indices: 13440533--13440585 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13440523 CCGATCCGAT
*
13440533 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
13440559 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13440585 C
1 C
13440586 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13442454 original size:26 final size:26
Alignment explanation
Indices: 13442417--13442466 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13442407 GTTGACTTAG
*
13442417 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
13442443 GCATACGAAGTTCATTCTCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
13442467 CAGATTAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13443528 original size:839 final size:835
Alignment explanation
Indices: 13441907--13443586 Score: 2263
Period size: 839 Copynumber: 2.0 Consensus size: 835
13441897 GTACACTTTG
* * * *
13441907 AGTTTTTAGCTGAATTGTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGG
1 AGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAATACAAGGACCACGTCTACCAAGTTTGG
* *
13441972 TGCCAAAACTCCTTCCGAAAAAATTGTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGA
66 GGCCAAAACTCCTTCCGAAAAAATTGTAAAAAATCCAGAACCGTAAAAAGTTTC-AAAATCATGA
* * *
13442037 AAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAA
130 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATCAAGGCTTAAAGGACAATTGTATGAA
* *
13442102 TTTACAAGCCATAAAAATTGTATTGACACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
195 TTTACAAGCCATAAAAATGGCATTGACACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
13442167 CCCTATCGATACACGGATTGTGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTCGGCCTG
260 CCCTATCGATACACGGATTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTC-GCCTG
* * * * * ***
13442232 TCCGTTCGTTCCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGATTGGAC
324 CCCGCTCATTCCATCGATTGGCTTAGGCATACGAAGTTCATTCCCAGCCTAAGATCAGACCAGAC
* ** * * *
13442297 CGAGGGTTATGGCAACAGGATTTGTAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGTGCA
389 CAAGGGTTACAGCAACAGGATTTGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTCGTGCA
* * * * *
13442362 TCCCGCCCCTCTAGTCGGCTGAGCGCTCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACGGAG
454 TCCCGCCCCTCTAG-CGACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGACATACGGAG
* * * *
13442427 TTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCAGTCTCAGATTAGACCAGACCGAGGGTTGC
518 TTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGATGC
* * * * * * *
13442492 GACAGCACATGCTGGGCTTGAGCATGTGCTGGTGTCGTATTTTTCTTTGCCGGGGCACCATCGCC
583 CACAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACC
* * * *
13442557 GGAGAACCCGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGCGGGGGTGTGCGCACGTC
648 GGAGAACCCGACCGACGACATTGGGGTTCCGACGATCGAGGGGCCCGCGGGGGTGTACGCACATC
* * * *
13442622 GTGAGTGATGGGTGCTAGTACTTGGCCTTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAA
713 GTGAGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
13442687 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
778 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
13442745 AGTTTTTAGCTAAATTTTTTTTGTGCATGCCAACAAAAATACAAGGACCACGTCTACCATGTTTG
1 AGTTTTTAGCTAAA-TTGTTTTGTGCATGCCAACAAAAATACAAGGACCACGTCTACCAAGTTTG
*
13442810 GGGCCAAAACTTCTTCCGAAAAAATTGTAAAAAATCTC-GAACCGTAAAAAGTGTTGC-AAATCA
65 GGGCCAAAACTCCTTCCGAAAAAATTGTAAAAAATC-CAGAACCGTAAAAAGT-TT-CAAAATCA
* * *
13442873 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTT-AAGTACAATTGTAT
127 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATCAAGGCTTAAAGGACAATTGTAT
* *
13442937 GAATTTACAAGCCTTAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
192 GAATTTACAAGCCATAAAAATGGCATTGACACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* * ** * *
13443002 CCACCCTATCGATCCACGGCTTGCGCATCCGGTCTCTTTGGCCGGCGTAGTGCCCGCCCG-C-CC
257 CCACCCTATCGATACACGGATTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTCGCC
* * * *
13443065 -GCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGGCCAG
322 TGCCCGCTCATTCCATCGATTGGCTTAGGCATACGAAGTTCATTCCCAGCCTAAGATCAGACCAG
* * * * **
13443129 ACCAAGGGTTGCAGTAGCAGGA-TTGACAGCACACAGAGGTGGACCCGACCGATCCTTGGCTCGT
387 ACCAAGGGTTACAGCAACAGGATTTG-CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTCGT
* *
13443193 GCATCTCGCCCCT-T-G-GACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGACGTACGG
451 GCATCCCGCCCCTCTAGCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGACATACGG
* ** *
13443255 AGTTCATTCCCAGTCTAAGCTTAC-AGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGA
516 AGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGA
* * * *
13443319 TGCCATAGCAGATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCATC
580 TGCCACAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
* * *
13443384 ACCGGAGCATCACCGCAGAACTTGACTGGCGGCATTGGGGTTTCGACGATC-AGGGGCCCG-GGG
645 ACCGGAG-A--ACC-C-G-AC----C-GACGACATTGGGGTTCCGACGATCGAGGGGCCCGCGGG
* *
13443447 GGTGTACGCACAT-GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
699 GGTGTACGCACATCG-TGAGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
13443511 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTA
763 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
13443576 GCCATTAA
828 GCCATTAA
13443584 AGT
1 AGT
13443587 CTCTGAAATG
Statistics
Matches: 734, Mismatches: 90, Indels: 35
0.85 0.10 0.04
Matches are distributed among these distances:
829 1 0.00
830 156 0.21
831 1 0.00
832 1 0.00
833 7 0.01
834 113 0.15
835 3 0.00
836 2 0.00
837 1 0.00
838 140 0.19
839 276 0.38
840 11 0.01
841 22 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (835 bp):
AGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAATACAAGGACCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTGTAAAAAATCCAGAACCGTAAAAAGTTTCAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATCAAGGCTTAAAGGACAATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGACACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATACACGGATTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTCGCCTGCC
CGCTCATTCCATCGATTGGCTTAGGCATACGAAGTTCATTCCCAGCCTAAGATCAGACCAGACCA
AGGGTTACAGCAACAGGATTTGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTCGTGCATC
CCGCCCCTCTAGCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGACATACGGAGTTC
ATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGATGCCAC
AGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGA
GAACCCGACCGACGACATTGGGGTTCCGACGATCGAGGGGCCCGCGGGGGTGTACGCACATCGTG
AGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
Found at i:13444890 original size:26 final size:26
Alignment explanation
Indices: 13444854--13444905 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13444844 CGGTCCGATT
* * *
13444854 TTAGACTGGGACTGAACTCTGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
13444880 TTAGACTGGGAATAAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
13444906 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:13445765 original size:26 final size:26
Alignment explanation
Indices: 13445736--13445788 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13445726 CCAATCCGAT
13445736 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
13445762 CTTAGACTGGGAATGAATTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13445788 C
1 C
13445789 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13446672 original size:26 final size:26
Alignment explanation
Indices: 13446636--13446688 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13446626 GCAGTCTGAT
13446636 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13446662 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13446688 C
1 C
13446689 GGGCACTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13447531 original size:26 final size:26
Alignment explanation
Indices: 13447502--13447554 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13447492 CTGGTCCGAT
* *
13447502 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
13447528 CTTAGACTAGGAATCAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
13447554 C
1 C
13447555 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:13448437 original size:26 final size:26
Alignment explanation
Indices: 13448407--13448459 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13448397 TCCGTCCGAT
*
13448407 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13448433 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13448459 C
1 C
13448460 CTTTGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13450223 original size:26 final size:26
Alignment explanation
Indices: 13450187--13450239 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13450177 CAGGTCAGAT
13450187 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13450213 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13450239 C
1 C
13450240 GTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13450708 original size:905 final size:901
Alignment explanation
Indices: 13444508--13452837 Score: 10450
Period size: 905 Copynumber: 9.3 Consensus size: 901
13444498 AAATGGTCAC
* * * * * *
13444508 AAACTCAAAGTGTACAGGATTTTTTGACCATTTGAAAAAAGTATCCCTATTTCAGATACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
13444573 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* * * * * * *
13444638 GATTAGGGATAATGGGG-CAATATAAGCGCCAAGCACCAGCAACCATTGCACATCATGTGCGCAC
131 GATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAC
* * * * * *
13444702 ACCCCTTCGGCCCCCCCGATCGTCGGAA-CCCAATGTCGCCAGACAGGTTCTCCGACGATGATCG
195 ACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * * * * * *
13444766 GACGATGGTGCCCC-AGTGAAGAAAAATACAGCACCTA-TACAAGCCTGAGTCCAGCATGTGCTG
259 GACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTG
** * * * * *
13444829 CCGCAACCCTCCATCCGGTCCGATTTTAGACTGGGACTGAACTCTGTATGCTTAGACTGGGAATA
322 CCGCAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * ** ** **
13444894 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGTTGGCTTGAGGGGCAA
387 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
** * * *
13444959 GATGCGCAAGCCGGGGATCGATCGGATCCCCCTCTACGTGCTGTCGATCCTACTATCGCAACCCT
452 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCT
* ** * *
13445024 CGGTCCGATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGA---
517 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * *
13445086 GCGGGCGGGCAGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGG
582 GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* ***
13445151 GTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAA
647 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
13445216 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAA-TTATCATGGCAAGATGACTCATTTTCTATT
712 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT-TCATGGCAAGACGACTCATTTTCTATT
** * * * *
13445280 TTTCATGATTTTTGAATCTTTTTGTGGTTCAGAATTTTTTAAAATTTTTTCGGAAGTAGTTTTGG
776 TTTCATGATTTTCAAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* *
13445345 CCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
840 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
13445407 AAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGATACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
13445472 GGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* *
13445537 GAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA
* * * *
13445601 CCCCCCGG-CCCCCCGATCGTCGAAATCCCAATGCCGTCGAT-ATGGTTCT-C--CG--G-T---
196 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA-GGTTCTCCGACGATGCTCCG
* * * * * *
13445655 --GA---TGCTCCGATGAAGAAAAATGCGACACCAGCACATGCCCAAGCCTAGCATGTGCTGTCG
260 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
13445715 CAACCCTCGGTCCA-ATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
325 CAACCCTCGGT-CAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * *
13445779 TTTCATATGCCTAAGTCAACCCATGAAACGAACGTGCAGGCGCTCAACCGGCCAGAGGGGCGGGA
389 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * *
13445844 TGCGCAAGCCGGGGATCGTCTGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCCCAACCCTCG
454 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCTCG
* * * * * *
13445909 GTCTGGTCTGATCTTAGACTGGGAATGATCTCCGTAAGCCCAAGCCAACCGATGAAACGA---TC
519 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGC
* * * *
13445971 TGGAGGGCAGGCGGGCACTACGTCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
584 GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * *
13446036 GGTAGGAGGATTTAGGCACATCATCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
649 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
13446101 TCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
714 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
* * * *
13446166 CATAATTTTCAAAACTTTCTGCGGTTCGAGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCAC
779 CATGATTTTCAAAACTTTTTGCGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * ** *
13446231 CAAACTTGGTAGACGTCATCCTTGTATTTTTTTTGGCGTAAAAAAAAAAATTCAGCTAA
843 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
13446290 AAAATCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
13446355 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGATT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* * * * *
13446420 GATGAGGGATAGGGGGCCAATATAAGTGCAAAGCACCAGCAACCATCGCACATCATGTGCGCACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA
* ** * *
13446485 CCCCTCCGGCCCCCCCGATCGTCGAAACCTTAATGCCGCCGGACAGGTTCTCCGACGATGATCCG
196 CCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
* * * * *
13446550 ATGATGGTGCCTCAACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCG
260 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
13446615 TAACCCTCGGTGCA-GTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
325 CAACCCTCGGT-CAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
13446679 ---C---T-CC---GT--------------A---TGCGGGCACTCAGTCGGCCAGAGCGACGGGA
389 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* ** * ** * * *
13446717 TGGGCAAATCGAGGATCATCCGGGTCCCCCTCTACGTGCTATCGATCCTACTGTCC-CAACCCAT
454 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTACT-ACCGCAACCC-T
* * * *
13446781 CGGTCTGTTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCGATGAAACGAGCG
517 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-
* * * * *
13446845 GGAGGGAGGGCCGGCGGGCACTACGCCGGCCAGGGAGACGGGATGCGCAAGCCGTGGATCGATAG
581 GGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
13446910 GGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
646 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * * *
13446975 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCGAGACGACTCGTTTTTTATT
711 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
* *
13447040 TTTCAT-AGTTTTCAAAACTTTTTGCGGTTCGGGACTTTTTAAAATTTTTTCGGAAGGATTTTTG
776 TTTCATGA-TTTTCAAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* *
13447104 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAA
839 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
13447167 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
13447232 TGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
** * * **
13447297 GATGAGGGATAGGGACCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCACGTGCGTACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA
*
13447362 CCCCCCAGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--CGA-----C-
196 CCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
*
13447418 A--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAAT-CCCGAGCCTAGCATGTGCTGCC
260 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC-ATGCCCGAGCCCAGCATGTGCTGCC
** * * *
13447480 ATAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATCAA
324 GCAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
13447545 CTCCGTATGCCTAAGTCAACGCACGAAACGAGCGTACGGACGCTCAGCCGGCCAGAGGGGCAGGA
389 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * * *
13447610 TGCGCAAGCCGGGGATCAGTCGGGTCCCCCTTTGCCTGCTGCCGATCCTGCTGCCGCAACCTTTG
454 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCTCG
* *
13447675 GTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGG
519 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-CGAG
* * * *
13447740 CGGACGGGCGGGCGGGCGGGCACTACGCCGACAAGAGAGACGGGATGCACAAGCCGTGGATCGAT
580 CGG-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * *** * *
13447805 GGGGTAGTAGGTTGGTTTATAAACATCTCCATATTTCTGCATGCCAATGCCATTTTTATGGCTCG
644 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
13447870 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA-TTATCATGGCAAGACGACTCATTTTTT
709 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT-TCATGGCAAGACGACTCATTTTCT
** *
13447934 ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGCGTTT
773 ATTTTTCATGATTTTCAAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
13447999 TGGCCCCAAACTAGGTAGACATGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
837 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * * *
13448064 AAAATCGAAGTGTATAAGATTTTGTGACCATTTTGAAAAAAGTGCCCCCAGTTCAAACACTTTAA
1 AAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
13448129 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTCCTCAAGGTT
65 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* * * *
13448194 TGATGAGGGATAGGGGGCAAATATAAGGACCAGGTACCAGCACCCATCGCACATCATGT--ACGC
130 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAC
* * * * *
13448257 ACCCCCCGGTCCCCCCGATC-ACTGGAACCCCAATGCTGCCGGTCAAGTTCTCC-AGTGATGCTC
195 ACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTC
* * ** * *
13448320 CGGCGATGGTGCCCCGATGAAGAAAAATGCATCACCAGCACATGCCCGAGCCTAGCATGTGCTAC
258 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * *
13448385 AGAAACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGA
323 CGCAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* ** * * * * * * *
13448449 ACTCTGTATGCCTTTGTCAACCCATGAAAGGGGCGTGCAGGCGCTCAACCGACTAGAGGGGCGGG
388 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * *
13448514 ATGCGTAAGCCGGGGATTTGGCCAGGTCCCCCTCTGCGTGC--T--A-CCGTA--A--G----CC
453 ATGCGCAAGCCGGGGA-TCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC-TACTACCGCAACCC
** * * *
13448566 TCGGTTTGGT-TCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAG
516 TCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * * * *
13448630 CAGGCAGGCGGGTGGGCGGGCACTATGCCGGTCAGAGAGATGGGATGCGCATGCCGTGGATCGAT
580 C-GGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * *
13448695 AGGTTGGTAGCTGGGTTTAGGCACAAT-ATCATATTTCTGTATGCCAATGCCATTTTTATGGCTT
644 AGGGTGGTAGGTGGGTTTAGGCAC-ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
*
13448759 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACGACTCATTTT-T
708 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
*
13448823 ATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
773 ATTTTTCATGATTTTCAAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTT
** * *
13448888 TGGTGCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
837 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
13448953 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCAGACACTTTAAC
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
13449018 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
*
13449083 GATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCACATCATGTGCGCAAC
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GC-AC
* * * * * *
13449148 CCACCCCCCGGCCCCTCCGATCATCGAAACCCCAATGCCGTCGGTCATGTTCT-C--C---G---
193 ACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * * ** * *
13449204 -G-CGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCTTGAGCCCAGCATGTACTAC
258 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
** * * * * * *
13449267 CGTGACCCTCGGTCCA-ATCCGATCTTAGACTTGGAATGAACTTCGTATGGTTAGGCTGGGAACG
323 CGCAACCCTCGGT-CAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * *
13449331 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGAGCTCAGCCGGCTAGAGGGGCGG
387 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * * *
13449396 GATGCACAAGCTGGGGATCGGTC-GGTGCCCCCTCTACGTGCTGTCGATCTTGCTATCACAACCC
452 GATGCGCAAGCCGGGGATCGGCCGGGT-CCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCC
* * *
13449460 TCGGTCTGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA--
516 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * *
13449523 -----GCGGGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
581 GGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
13449583 GGTGGTAGGTGGGTTAAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
646 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* *
13449648 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATT
711 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
* ** * * * * *
13449713 TCTCACAATTTTCAAAACTCTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGG
776 TTTCATGATTTTCAAAACTTTTTGCGG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * *
13449778 CCCCAAACTTAGTAGACATGATCCTTGTATTTTTGTTGGCATGCTCAAAAAAATTCAGGTAA
840 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
13449840 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
13449905 GGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGCGGTGTGAGTTCTCGAGGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* ** *
13449970 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCATACATCATGTGCAAACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAC-
* * *
13450035 ACACCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCTGTCAGGTTCTCCGACGATGCTCC
195 AC-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * * *
13450100 GACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGGATGTGTTGCC
259 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* *
13450165 GCAACCCTCGGTCAGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAA
324 GCAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
13450230 CTCCGTATGCGTAAGTTAACCCACGAAACGAG-GATGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
389 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-TGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
*** * * **
13450294 ATTAACAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGTTGTAGATCCTACGGCCGCAACCCTC
453 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCTC
* * * *
13450359 GATCCAGTCTAATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
518 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * **
13450424 TCGGGTGGGCGGGCGGGCACCACGTCAGCCAGAGAGATTGGATGCGCAAGCCGTGGATCGATAGG
583 -CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
13450489 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAG
647 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * * * *
13450554 ATTCATACAATGTTCCCTGAAGCCTTCACGTGAAGTTTCATGGCGAGACGAATCGTTTTCTATTT
712 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
* ** * * * *
13450619 TTCACGATTTTTGAAACTTTTTACTGTTCGTGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGC
777 TTCATGATTTTCAAAACTTTTTGCGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
**
13450684 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACCATTCAGCTAA
841 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
13450745 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * **
13450810 GACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGCTGTGAGTTCTTGAGGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* *
13450875 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCAAACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAC-
* * * *
13450940 ACCCCCTCGGTCCCCCCGATCGTTGGAACCCCAATGCCGCCTGTCAGGTTCTCCAACGATGCTCC
195 ACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * * * *
13451005 GACGATGGTGCCCCGAAGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGGATGTGTTGCC
259 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * * *
13451070 GCAACCCTCGATCTGGTCAGATCTTAGACTGGGAATGAACTCCGTGTGCTTAGATTAGGAATGAA
324 GCAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* *
13451135 CTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGA
389 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
*** ** * * *
13451200 TTAACAAGCCGAAGATCGACCGGGTCCCCCTCTGCGTGCTG-CTGATCCTACGACCACAACCCTC
454 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTC-GATCCTACTACCGCAACCCTC
* * * * * *
13451264 AGTCCAGTCTAATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGG
518 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * * * **
13451329 TCGGGTGGGCGGGCGAGCACCACGTCGACCAAAAAGATTGGATGCGCAAGCCGTGGATCGATAGG
583 -CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
13451394 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTATAA
647 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
** *
13451459 ATTCATACAGCGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTCATTTTCTATTT
712 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
* * * * *
13451524 TTCACGATTTTCAAAACTTTTTACAGTTCAGGATTTTTTTAAATTTTTTCGGTAGGCA-TTTTGG
777 TTCATGATTTTCAAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGG
* * *
13451588 CCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAA
840 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
13451650 AAACGT-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAT
1 AAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * * **
13451714 TGGCTACAGGCAGCAAACCTATAAAATCTCAAATGCTCTATAAGGTGGTGTGAGTTCTGGAGGTT
65 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* *
13451779 TGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCAATCGCACATCATGTGCACAT
130 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACA-
* * * *
13451844 CCCCCCCCGGCGCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGG---T-------T-CTCC
194 CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* *
13451898 GACGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCG
259 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
** * * * * *
13451963 GCAACCCTCGGTCCCGTTCGACCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATAAA
324 GCAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * *
13452028 CTCTGTATGCCTAAGTCAACCCATGAAAGGAGCGTGCGGGTGCTCATCCGGCCAGAGGGGTGGGA
389 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
** * ** * * * *
13452093 TGCGCAAGCCAAGAATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTATCGCAACCCTTG
454 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCTCG
* * * **
13452158 ATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAACGA---GC
519 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGC
* * * * *
13452220 GAGTGGGCGGGCGGGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGT
584 GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* ** * *
13452285 GGTAGGTGGGTTTAGGCACATCTTCACATTTCTGTGTGCCAATGCGATTTTTATGGGTTGTAAAT
649 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
13452350 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
714 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
** * * *
13452415 CATGATTTTTGAAACTTTTTGCGGTTCAGGATTTGTTAAAATTTTTTTGGAAGAAGTTTTGGCCC
779 CATGATTTTCAAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * *
13452480 AAAAGTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCTCAAAAAAATTCAGCTAA
843 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
13452539 AAACTCAAAGTGTAGAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAAACACTTTAAT
1 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
13452603 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTT
66 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* *
13452667 GATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCACACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA
* * * * * *
13452732 CCCCCTGG-CCCCGCGATCGTCGGAACCCCAATGCCACCGGTCAAGTTCTCCGACGATGCTCTGG
196 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
** * *
13452796 CGATGGTGCCCCGATAAAGAAAAATGCAGCACCAACACATGC
261 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
13452838 TAGAGCCCCG
Statistics
Matches: 6520, Mismatches: 746, Indels: 333
0.86 0.10 0.04
Matches are distributed among these distances:
865 1 0.00
866 110 0.02
867 2 0.00
868 1 0.00
869 2 0.00
872 1 0.00
873 92 0.01
874 47 0.01
876 7 0.00
877 514 0.08
878 1 0.00
881 3 0.00
882 81 0.01
883 834 0.13
884 11 0.00
885 42 0.01
886 256 0.04
887 376 0.06
888 222 0.03
889 465 0.07
890 167 0.03
891 10 0.00
892 49 0.01
893 401 0.06
894 113 0.02
895 41 0.01
896 79 0.01
897 604 0.09
898 161 0.02
899 171 0.03
900 112 0.02
901 3 0.00
902 2 0.00
903 1 0.00
904 41 0.01
905 1410 0.22
906 87 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA
CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
AACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGT
CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGG
GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
TGATTTTCAAAACTTTTTGCGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
Found at i:13452014 original size:26 final size:26
Alignment explanation
Indices: 13451985--13452037 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13451975 CCCGTTCGAC
* *
13451985 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATAAACTCT-GTATG
13452011 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
13452037 C
1 C
13452038 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:13452948 original size:26 final size:26
Alignment explanation
Indices: 13452912--13452964 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13452902 GTTGACTTAG
*
13452912 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
*
13452938 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
13452964 G
1 G
13452965 ATAGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCAAGTCTAA
Found at i:13455638 original size:26 final size:26
Alignment explanation
Indices: 13455602--13455654 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13455592 TTTGACTTAG
13455602 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13455628 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13455654 G
1 G
13455655 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13456122 original size:894 final size:896
Alignment explanation
Indices: 13452843--13458051 Score: 6922
Period size: 894 Copynumber: 5.8 Consensus size: 896
13452833 CATGCTAGAG
* * * ** * * **
13452843 CCCCGACTTGCGCATCCTACCCCTCAGGCTGGCTGAGCGCCCTTACACCCGTTTTATGGGTTGAC
1 CCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
13452908 TTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATAGGACT
66 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** *
13452973 GGATCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC
131 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
13453038 -GGGCACCATCGCCGGAGCATCGTCGAAAAACCTGACCGACGGCATTGGGGTTTCGGTGATCGGG
196 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG
*
13453102 GGGGCCGGGCGGGGTGTGCGTACATGATGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCC
261 GGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-C
*
13453166 ACCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
324 -CC--TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
13453231 TACTGTCAGTAGCCATTAAACTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
386 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
13453296 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAGATACAAGGATCACGTCTAC
451 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * * ** *
13453361 AAAGTTTTGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACTGCAAAATGTTTCAA
516 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
*
13453426 AAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
581 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
13453491 TTGTATGAATTTAGAAGCCATAAAAATGGCTTTGGCATGCA-AAACTATGAAGATGTACCTAAAC
646 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA-TATGAAGATGTGCCTAAAC
* *
13453555 CCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT-GGCCGACGTAGTG--C-C
710 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCAG-CGTAGTGCCCGC
* * * * *
13453616 C-ACCCGCCCGATCGTTTCGTCGGTTGGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATTAG
774 CTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * **
13453680 ACCAGACCGAGGGTTGTGGTAGCAGGATCACCAGCACGTAGAGGGGGACCCGG-CTGAT
839 ACCAGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTC-GAT
* * * * * *
13453738 CCCCGGCTTGCGCATCCCGCCCCTC-GGTCGACTGAGCGCCCGCATGCTTGTTTCGTGGGTTGAC
1 CCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
** *
13453802 TTAGGCATGTGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
66 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
13453867 GGATCGAGGGTTGCGACAGCACATGCTGTGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATC
131 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * ** * *
13453932 GGGGCACCATGGCCGGAGGATCGTCGGAGAACCTGA-CGGTGGCATTGGGGTTTCGGCGATCGGA
196 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG
*
13453996 GGGGCC--GGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTT-GCCCTTATATTGGCCC
261 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG--C
*
13454058 CCTTTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
324 CC--TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
13454123 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAGTGGTCACAAAATCTTGT
387 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
13454188 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAGAAATACATGGATCACGTCTACC
452 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * * * * * *
13454253 AAGTTTCGGGCTAAAACTTCTTTCGAAAAAATTTGAAAAAATCCCGAACCGCAAAAAGTTTCATA
517 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAA
* * * * *
13454318 AATCATAAAAAATAGAAAACGATTCGTCTTGCCATGAAACTT--CGTGTAGGCTTATGGGACCAT
582 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* **
13454381 TATATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
647 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
** * *
13454446 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGCCAGCATAGTGCCTGCCTG
712 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCAGCGTAGTG-C--CC-G
* * * * ** *
13454511 CCCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCGTAGTCTAAGATCG
773 CCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
* * ** * * *
13454576 GACTAGA-CTGACGGTTGTGATAGTAGGATCGGCCGCACGTAGAGGCGGACCCGGTCGAT
838 GACCAGATC-GAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGAT
* * * * *
13454635 -CCC-ACCCTGTGCATGCCACCCCTCTGG-CGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGA
1 CCCCGA-CTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* *
13454697 CTTAGGCATACCGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC
65 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * ** * *
13454762 CAGACCGAGGGTTACGGCAGCACATGCTGGAATCGAGCATGTGCTGGTGCCGCATTTTTCTTCGC
130 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * ** *
13454827 CGGGGCACCATCACCAGAGCATCGCTAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG
195 CGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
* * *
13454892 GGGGGCCGGAGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGGCCTTATATTGGCC
260 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-C
* *
13454957 CCTTATCTTGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
324 CC-T-CCCT-CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
13455022 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCG
386 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
13455087 TACACTTCGAGTTTCTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAGGGATCACGTCTAC
451 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * **
13455152 CAAGTTT-GGGCCAAAACTCCCTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCA
516 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCACAAAAAGTTTCA
*
13455216 AAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
580 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
13455281 ATTGTATGAATTTATAAGCTATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAT
645 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* *
13455346 CCACCTACCACCCAATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGGCAGCGTAGTGCCCGCC
710 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCAGCGTAGTGCCCGCC
* * *
13455411 TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAGGACTGGA
775 TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
** * * * * * *
13455476 CTGGATCGAGGGCTATGGCAGCAGGATGGGCAGCACATAGAAGGAGACCCGGTCGAT
840 CCAGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGAT
* * * * *
13455533 CCCCTACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTTGTGGTTTGAC
1 CCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
*
13455598 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
66 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
13455663 GGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCAGGTGTCGCATTTTTCTTCGTC
131 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * *
13455728 GGGGCACCATCGCTGGAGCATCACCGGAGAACCTCACTGACGACATTGGGGTTCCGACGATCGGG
196 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG
* * * * *
13455793 GGGCCCGGGGGGTGTGTGCACACATGATATGTGATGGGTG-TAGGTACTTAGCCCTTATATTGG-
261 GGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGC
* *
13455856 CC-CCCT-GTCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
324 CCTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
13455919 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTAC
389 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
13455984 ACTTCGAGTTTGTAGCTGAAATTTTTTGTGCCTACCAAAAAAAATACAAGGATCACGTCTACCAA
454 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* *
13456049 GTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAA
519 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAA
* * * *
13456114 TTGTGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTG
584 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
13456179 TATGAATTTACAAGACATAAAAATGGCATTGGTACGCAGAAATATGAAGATGTACCTAAACCCAC
649 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
13456244 CTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT-GGCCGACGTAGT----GCCTGC
714 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCAG-CGTAGTGCCCGCCTGC
* *
13456304 CCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
778 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
* * * **
13456369 GACTC-AGGGTTGCAGG-AGCAAGATCGGCAGCACGCAGAGGGGGACCCTATCGAT
843 GA-TCGAGGGTTG-TGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGAT
* * * * * *
13456423 CCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCACCTGCACGCTCATTTCGCGGGTTGAC
1 CCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * * *
13456488 TTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATGGGATC
66 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * ** *
13456553 GAACTGAGGGTTGCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGTCGCATTTTTCTTCGTC
131 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * *
13456618 GGGGAACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
196 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG
*
13456683 GGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
261 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG--C
* *
13456747 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTT
324 CC--TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
13456812 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
387 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
13456877 ACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTAC
452 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTAC
* * * * *
13456942 CAAGTTTGCGGCCAAAACTCCTTTCGAAAAAAATTTAAAAAATCCCGAACCATAAAAAGTTTCCA
516 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
* *
13457007 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCCTAAGGGACCA
581 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
13457072 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
646 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * *
13457137 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCTGCCC
711 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCAGCGTA--G--TGCCC
** * * *
13457202 GCCTGCCCGCTTGCTTGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTATAAGATT
772 GCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* * * *
13457267 AGACCA-AACTGAGGGTTGTGGCAGTAGGATCGACAGCACGTAGAGGGGGACCCGGTCGAT
837 GGACCAGATC-GAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGAT
* * * * * * * * * * *
13457327 CTCTGGCTCGTGCATCCCACCCCTCTAGCTGACTGAGCACCTGCACGCTCGTTTCATGGGTTGAC
1 CCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
13457392 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATC-GAGTTCATTCCCAGTCTAAGATCGGAC
66 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * *
13457456 CGGACCGAGGGTTGCAGCAACACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTTGT
130 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* ** * * * *
13457521 CGAGGCACCATCGTTGGAGCATCGCGGGAGAACCTAACCGGTC-GCATTAGGGGTTCCGGTGATC
195 CGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGGCATT-GGGGTTCCGGCGATC
* *
13457585 -GGGGGGCTGGGGGGGTGTGTGCACAGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
258 GGGGGGGCCGGGGGGGTGTGCGCAC--ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
13457649 GGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
321 GG-CCC---TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
13457714 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAA
382 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAA
* *
13457779 TCCTGTAACAATTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGAT-AC
446 TCTTGT-ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * * *
13457842 GTCTACCAAG-TTGGGGCCAAAA-TCCTTCAGAAAAAA-ATTATAAAATCCCGCCACGCAAAAAA
510 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG-AAC-CACAAAA
* ** *
13457904 ACTTTTGAAAATCGTGAAAAATAAGAAAACGAGTCCAAATCTTGCCATGAAAACCTTCACGTGAA
573 AGTTTCAAAAATCGTGAAAAAT-AGAAAACGAGT-C--GTCTTGCCATG-AAA-CTTCACGTGAA
* * * *
13457969 GGCTTAAGGGAGC-TTGTAATGAAGTGTACAAGCCATAAAAATGGCATTGGCACACAGACATATG
632 GGCTTAAGGGACCATTGT-ATGAA-TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT-
13458033 GAAGATTGTGCCTCAAACC
694 GAAGA-TGTGCCT-AAACC
13458052 TCATCAAACC
Statistics
Matches: 3814, Mismatches: 421, Indels: 138
0.87 0.10 0.03
Matches are distributed among these distances:
888 44 0.01
889 126 0.03
890 344 0.09
891 320 0.08
892 16 0.00
893 4 0.00
894 557 0.15
895 226 0.06
896 448 0.12
897 136 0.04
898 106 0.03
899 91 0.02
900 477 0.13
901 43 0.01
902 129 0.03
903 15 0.00
904 327 0.09
905 66 0.02
906 27 0.01
907 173 0.05
908 24 0.01
909 29 0.01
910 7 0.00
911 27 0.01
912 35 0.01
913 5 0.00
914 7 0.00
915 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (896 bp):
CCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG
GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATC
GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCAGCGTAGTGCCCGCCTGCCCG
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAT
CGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGAT
Found at i:13458709 original size:26 final size:25
Alignment explanation
Indices: 13458680--13458731 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
13458670 GTTGACTTAG
13458680 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATA-GAAGTTCATTCCCAGTCTAA
*
13458706 GCATAGGAGTTCATTCCCAGTCTAA
1 GCATAGAAGTTCATTCCCAGTCTAA
13458731 G
1 G
13458732 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATAGAAGTTCATTCCCAGTCTAA
Found at i:13460154 original size:902 final size:902
Alignment explanation
Indices: 13458050--13466735 Score: 10215
Period size: 902 Copynumber: 9.9 Consensus size: 902
13458040 GTGCCTCAAA
* *
13458050 CCTCATCAAACCTCGGAGAA-TCACACCCCCTTAAAGAGC-GTTGAGA-TTTATC--GTTTGCTA
1 CCTCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTG
* * ** *
13458110 CCAG-A--CAGTTAAAGTGCCTGCAAT-GGGACTTTTTTTTCAAATGGT--CGAAATCTTGTACA
64 CCAGTAGCCA-TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * *
13458169 CTTTGAG-TTTTAGCTGAA-TTTTTTGTGCACGGCAACAATAATAGAAGGATCA-AT-T----AG
128 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** * * *
13458226 TTTTGGCGGGTAAAGAATCCTTTCGAAAAAATTTTAACAAAATCCTC-AATCCGT-AAAAGTTTC
193 -TTTGG-GGCCAAA-ACTCCTTCCAAAAAAATTTTAA-AAAATCC-CGAA-CCGTAAAAAGTTTC
* * * * * *
13458289 CAAAATTGTGAAAAATAGAAAATGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGAGAC
252 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
** * *
13458354 CATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAAA
317 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
*** * * *
13458419 CCCACCTACCACCCTATCGATCCATAACTTGCACATCCCGTCTCTTTGGCCGACGTAGTGCCCGC
382 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * *
13458484 CCGTCCGCCCGCCCGTTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
447 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
* * * * * * * *
13458549 TCAGACCAAACCGAGGGTTAC-GATAGCAGGATCGGCAACACACAAAGGGGGAACCAACCGATCC
512 TCAGACCAGACCGAGGGTTGCAG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCC
* * * * *
13458613 CTGGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGTAACCGTACGCTCGTTTCGTGGGTTGACTT
576 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
*
13458678 AGGCATACGAAGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGGACCAG
641 AGGCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * *
13458742 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATTTGTTGGTGCCGCATTTTTCTTCACCGG
705 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGG
* * * * * *
13458807 GGCACCATCACCAGAGCATCACCGGAGAACCTGACCGACGGTATTGGGGTACCGGCAATCTAGGG
770 GGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGG
* * *
13458872 GGTCGGGGGGGTGTGTGCGCACATCATGTGC-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
834 GGGC-CGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
13458936 CCTATC
897 CCTATC
* * *
13458942 ACTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
1 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
13459007 AGTAGCCACTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
66 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
13459072 CGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
131 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
13459137 GGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAATTTTCAAAAATCGT
196 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* *
13459202 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTGTG
261 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
13459267 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
326 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
13459332 CACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
391 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * ** *
13459397 CGCCCGCTCGTTTCGTCGATTGGCTTAGGCATA-AGGAGTTCATTCCTAGTCTAAGATTGGACCG
456 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA-GAGTTCATTCCCAGTCTAAGATCAGACCA
* * *
13459461 GACCCAGGGTTGCAGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCAGCCGATCCCCGGCTTGC
520 GACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGC
* * *
13459526 GCATCTCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGATTGACTTAGGCATACG
585 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-
* * * *
13459591 GGGTTCATTTCCAGTCTAAGCAGACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGT
649 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
13459656 TACGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATC
714 TGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
* * * *
13459721 GCCGGAGCATCACCGGAGAACCTGACCGACGCCATTGGGGTTCCGGCGGTCGGGGGGGCCGGGGG
779 ACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG
* *
13459786 GTGTGCGCAC-TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATC
844 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
13459844 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
1 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
13459909 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
66 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
13459974 TGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAGATAGAAGGATCACGTCTACCAAGTTT
131 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
13460039 GGGGCCAAAAATCATTCCAAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGGTTT-AAAAATC
196 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGT-AAAAA-GTTTCAAAAATC
* **
13460102 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGGTGGCTTAAGGGACCATTGTA
259 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * ** *
13460167 TGAATTTAGAAGTCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCAAAACCCACCT
324 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * * *
13460232 ACCACCCTATCGATCCACGGCTTGAGCATCACATCTCCCTGGCCGGCGTAGAGCCCGCCCACCTG
389 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
13460297 CCCGCCTGCTGGTTTCGTCGG-TGCCCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGAC
454 CCCGCCCGCTCGTTTCGTCGGTTG-GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
** * * * * * * * *
13460361 CAGACCGAGGGTTGTGGCAGCAAGATTGGCAACACACAGAGGGGGACCCGGTCGATCCTCAGCTT
518 CAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTT
* * * * *
13460426 ACGCATCCCACCCCTCTGGCCGGCTGAGCACACACACGCTCCTTTCGTGGGTTGACTTAGGCATA
583 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * * *
13460491 CAGAGTTCATTACCAGTCTAAGCATACGAAGTTCATTCCCAGTTTAAGATCAGACCTGACTGAGG
648 C-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* ** * *
13460556 GTTGCGACAATACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGCCGGGGCACCG
712 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
** ** * * *
13460621 TCGTCGGAGCATTGCTGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATC---GGGG--GGG
777 TCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG
* * *
13460681 GGGTGTGCGCACATGATGTACGATGGGTGCTGGTACCTAGCCCTTATATTGGCCCCCTATC
842 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
13460742 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
1 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* **
13460807 AGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAAACGTCACAAAATCTTGTACACTT
66 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
13460872 CGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAATACAAGGATCATGACTACCAAGTTT
131 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* ** * * *
13460937 GGGGCCAAAAATCCTTTTGAAAAAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTG
196 GGGGCCAAAACTCC-TTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * *
13461002 TGAAAAATAGAAAATGAGTCCTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTAT
260 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
13461067 GAATTTACAAGCCATAAAAATGGCATTTGCATGCATAAATATGAAGATGTGCCTAAACCCACCTA
325 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
13461132 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGT----ACCCGCCCGC
390 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * *
13461193 CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
455 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCA
** * * * * **
13461258 GACTAAGGGTTGCAGCAGTAGGATCGACAGTACGCAAAGGGGGACCC-GACTAATCCCCGGCTTG
520 GACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAG-CCGATCCCCGGCTTG
* * * * * * * * *
13461322 CGCATCCCGCCACTCTGGTCGGCTGAGCACACGCACACTCGTTTCATCGGATGACTGAGGCGTAC
584 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
13461387 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAATGG
649 -GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * * * * *
13461452 TTGTGACAACACATGCTGGGCTCGGGCATGTGTTGGTG-TGACATTTTTCTTTGCCAGGGCACCG
713 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG-CATTTTTCTTCGCCGGGGCACCA
* * ** * * * **
13461516 TCGCCGAAGCATTGCCGGAGAACCAGACCGGTGGCATTGGGGTTCCGACGATCGGAAGGGCCGGG
777 TCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GG
* * *
13461581 GGGGTGTGCGCACATGATGTGCAATGGTTGCTGGTACCTGGCCCTTATATTGGCCCCCTATC
841 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
13461643 CCTCATCAAACTTTGAGAACTCACACCCCCTTAAAGAGCACTTAAGATTTTACAGGTTTGCTGCC
1 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * *
13461708 AGTAGCCATTCAAGTGTCTGGAATGGGGAAATTTTTTTCAAATGGTCACAGAATCTTGTACACTT
66 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
13461773 TGAGTTTTTAGCTGAATTTTTTTGAGCATG-CAA-AAAACATACAAGGATCACGTCTACCAAGTT
131 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTT
* ** *
13461836 TGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAAT-CCGAGCCGTAAAAAGTTTTGAAAATCA
195 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* *
13461899 TAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
260 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
13461964 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCGCCTA
325 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
13462029 CCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGTGTAGT----GCCTGCCCGC
390 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* *
13462090 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
455 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * *
13462155 AACCGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGA-GGGGACCCGGTCGATCCCCGGCTTGC
520 GACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGC
* *
13462219 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTTGGCATACG
585 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-
* * **
13462284 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTCCCAGTCTAAGATCGAATAGGACCGAGGGT
649 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* ** * * *
13462349 TACGATAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGACGGGGCGCCAT-
714 TGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
* * * *
13462413 --C---G--T---CGAAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGTCGGGGG
779 ACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-CCGGGG
* *
13462468 GGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATCTTGGCCCCCTATC
843 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
13462528 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCT
1 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
13462593 AGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-ACTT
66 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * * *
13462657 TGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATGCAGGGATCACGTCTACCCAGTTT
131 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
13462722 GGGGCCAAAACTTCTTTCAAAAAAATTTGAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGT
196 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
*
13462787 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATG
261 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* ** * * *
13462852 AATTTAGAAGTGATAAAAATGGCATTGGAAAGTAGAAATATGAAGATGTGCCTAAACCCACCT--
326 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
13462915 -A--C---C-A--C-C--C-T----A---------TCTGGCCGGCGTAGTGCCCACCTGCCCGCC
391 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * **
13462954 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCTGACTGG
456 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * *
13463019 ACCGAGGGTTGC-GACAGCAGGATCGGCAGCACACAAAAGGGGACCCAGTCGATCCCTGGCTTGC
521 ACCGAGGGTTGCAG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGC
* ** * * * *
13463083 CCATCCTACCCCTCTGGCCGGCTGAGTAACTGCATGCTCG-TTCGT-GG--G---T-----T--G
585 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
13463134 A---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTT
650 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* *
13463187 GCGGCAGCACATGCTGGGCTCGGGCATTTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCA
715 GCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCA
** * * * * * * **
13463252 CCGGAGCATCGTCTGAGATCCTGACCGACGACATTGGGGTTCCGGCAATCGGGGCGATCGGGGGG
780 CCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG
* *
13463317 TGTGTGCAGACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATC
845 TGTGCGC--ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
13463377 ACTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAACATTTGAGATTTTACAGGTTTGCTGCC
1 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
13463442 AGTAGCCATTAAAGCGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATT
66 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
13463507 CGAGTTTTTAGCTGAATTTTTTTATGCATACCAACAAAAATACAGGGATCACGTCTACAAAGTTT
131 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
** ** * * * * *
13463572 ATGGCCAAAACTCCTTCTGAAAAATTTTTAAAAAATCTCGAGCCGTAAAAAGTTTCGAAAATCTT
196 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* *
13463637 GAAAAATAGAAAACGAGTCCTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
261 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
13463702 AATTTACAAGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCGCCTAC
326 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * ** *
13463767 CACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCTGATGTAGTGCCCGCCTGCCCGCC
391 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * *
13463832 CGGCAGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAG
456 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * *
13463897 ACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGA-GGGGACCCGGCCGATCCCCGACTTGTG
521 ACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCG
* *
13463961 CATCCCACCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT-----T--G-
586 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
* * * *
13464018 G--------CA---T-A-C--A--GAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGAGTTA
651 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
** * * *
13464066 CAACAGCACATGCAGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTTC-CCGGGGCACCATCG
716 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTC-TTCGCCGGGGCACCATCA
* * * *
13464130 TCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGG
780 CCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG
* * *
13464195 TGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATCTTGGCCCGCTATC
845 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
13464253 CCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
1 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
13464318 AGTAGCCATTAAAGTGCCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
66 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
13464383 CGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
131 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
13464448 GGGGCCAAAACTCTTTTCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
196 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* *
13464513 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATC
261 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
13464578 AA-TTAAAAGCCATAAAAATGGCATTGGTA-GCAGAAATATGAAGATTTGCCTAAACCCACCTAC
326 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* ** * *
13464641 CACCCTATCGATACACGGCTTAAGCATCCCATCTCTCTAGCCGGCGTAGT------------GCC
391 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * *
13464694 CGCCCTCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGCCCAG
456 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * *
13464759 ACCAAGGGTTACGGTAGTAGGATCGGCAGCACGCAGATGGGGA-CCAGACCGATCCCCGGCTTGC
521 ACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAG-CCGATCCCCGGCTTGC
* * * * * * *
13464823 ACATCCTGCCCCTCTGGTCGACTGAGCGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATACG
585 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
13464888 -G---------AG--T-----T-C--A-TT-A---CAAGTCTAAGATCGGACAGGA-TGAGGGTT
650 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * * * * * *
13464927 GCAGCAGCACATGCTGGGCTCGGTCATGTGCTGGTGTCGTATTATTCTTCGTCGGGGCACCAACA
715 GCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCA
* ** * * * ** *
13464992 CCGAAGCATCGTCAGAGAACCTGACCGGCAGCGTTGGGGTTCCGATGATCGGAGGGGCCGGGGGG
780 CCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGG
*
13465057 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATC
844 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
13465116 CCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
1 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
13465181 AGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
66 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
13465246 CGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACCAAAATACAAGGATCACGTCTTCCATGGTT
131 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
13465311 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGT-AAAAGTTTCAAAAATCAT
196 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* * * *
13465375 GAAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAAGCTTAAGGGACCGTTGTATG
261 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
13465440 AATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
326 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
13465505 CACCCTATCGATTCACGGCTTGCACATCACGTCTCTCTGGCCGGCGTAGTGCCAGCCCGCCTGGC
391 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* ** * * * * * *
13465570 CGCCCG-TCGTTTCATCGAATGGCTTAGGTATAC-GAAGTTCAATCCTAGTCTAAGATCAAATCG
456 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * *
13465633 GATCGAGGGTTGCGGCAGCAAGATCGACAGCACACAGA-GGGGACCC-GACCGATCCCCAGCTTG
520 GACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAG-CCGATCCCCGGCTTG
* * **
13465696 CGCAT-CTGCCCCTCTGGCCAGCTGAGCACCCGCACGCTAATTTCGT-GG--G---T-----T--
584 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
13465747 GA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
649 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * ** * *
13465800 TACGGCAGCACATGCTGGGCTCAGGCATGTGTTGGCACCGTATTTTTCTTCGCCTGGGCACCAT-
714 TGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
** * *
13465864 -------CAT---CGGAGAACCTGATTGGCGGCATTGAGGTTCCGGCGATCGGGGAGGCCGGGGG
779 ACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGG
* * *
13465919 GGTGTGCAG-ACATGATGTGTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATA
843 GGTGTGC-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
13465979 CTTCATCAAACCTCGAG-----A-A----C-T------C------------ACAGGTTTGCTGCC
1 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
13466015 AGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
66 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
13466080 CGATTTTTTAGCTAAATTTTTTTGTGCATGCCAA-AAAAAGTACAAGGATCATGTCTACCAAGTT
131 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTT
* * * *
13466144 TGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATGCCGAACCGCAAAAAGTTTCAAAAATCG
195 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* *
13466209 TGAAAAATAGAAAATGAGTCGTCTT-CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
260 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** *
13466273 GAATTTACAAGGCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAGACCCACCTA
325 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
13466338 CCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCTCGC
390 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * * *
13466395 CTGCCCACTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC-
455 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * *
13466459 GCATCGAGGGTTGCAGTAGCAGGATCGACAGCACGTATAGGGGGACCC-GATCGATCCCTGGCTT
520 G-ACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAG-CCGATCCCCGGCTT
* *
13466523 ACGCATCCCGCCCCTCTGGCCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
583 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
13466588 CAGACTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA-TCTAAGATCGGATCGAATCGAGG
648 C-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
** * * * * *
13466652 GTTTTGGCAGCACATGCTGGGCTCGGGCATTTGTTGGTGCCGTATTTTTCATCGTCGGGGCACCG
712 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
*
13466717 TCACCGGAGCATCATCGGA
777 TCACCGGAGCATCACCGGA
13466736 TCGCCAGAAC
Statistics
Matches: 6761, Mismatches: 830, Indels: 433
0.84 0.10 0.05
Matches are distributed among these distances:
826 9 0.00
827 74 0.01
828 27 0.00
829 36 0.01
830 2 0.00
832 1 0.00
833 4 0.00
834 312 0.05
835 40 0.01
837 97 0.01
840 2 0.00
842 2 0.00
843 3 0.00
845 3 0.00
846 3 0.00
847 14 0.00
848 37 0.01
849 166 0.02
850 230 0.03
852 2 0.00
853 2 0.00
854 75 0.01
855 21 0.00
857 2 0.00
858 2 0.00
859 15 0.00
860 2 0.00
861 4 0.00
862 287 0.04
863 614 0.09
864 133 0.02
865 6 0.00
866 5 0.00
867 3 0.00
868 4 0.00
869 4 0.00
870 5 0.00
872 3 0.00
873 52 0.01
874 157 0.02
875 101 0.01
876 349 0.05
877 54 0.01
878 268 0.04
879 7 0.00
880 1 0.00
881 1 0.00
882 3 0.00
884 36 0.01
885 251 0.04
886 21 0.00
887 140 0.02
888 1 0.00
890 1 0.00
891 5 0.00
892 31 0.00
893 8 0.00
894 6 0.00
895 333 0.05
896 189 0.03
897 321 0.05
898 282 0.04
899 208 0.03
900 60 0.01
901 225 0.03
902 809 0.12
903 16 0.00
904 396 0.06
905 166 0.02
906 5 0.00
907 5 0.00
908 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG
ACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCAC
CGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
Found at i:13460523 original size:26 final size:26
Alignment explanation
Indices: 13460486--13460538 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13460476 GTTGACTTAG
13460486 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
* *
13460512 GCATAC-GAAGTTCATTCCCAGTTTAA
1 GCATACAG-AGTTCATTACCAGTCTAA
13460538 G
1 G
13460539 ATCAGACCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:13461414 original size:26 final size:26
Alignment explanation
Indices: 13461384--13461433 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13461374 GACTGAGGCG
13461384 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
13461410 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13461434 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:13462306 original size:26 final size:26
Alignment explanation
Indices: 13462277--13462329 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13462267 GTTGACTTTG
13462277 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13462303 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13462329 G
1 G
13462330 ATCGAATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13465195 original size:863 final size:864
Alignment explanation
Indices: 13462951--13466609 Score: 4481
Period size: 863 Copynumber: 4.2 Consensus size: 864
13462941 CCACCTGCCC
* *
13462951 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCTGAC
1 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
** * * * * * *
13463016 TGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACACAAAAGGGGACCC-AGTCGATCCCTGGCT
66 CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC-AGAGGGGACCCGA-CCGATCCCCGGCT
* ** * * * *
13463080 TGCCCATCCTACCCCTCTGGCCGGCTGAGTAACTGCATGCTCG-TTCGTGGGTTGACTTAGGCAT
129 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * *
13463144 ACGGAGTTCATTCCCAGTCTAAGATTGGACCA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTC
194 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGACTGAGGGTTACGGCAGCACATGCTGGGCTC
* * * *
13463208 GGGCATTTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCTGAGATCC
259 GGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCG-CGGAGAACC
* * * * **
13463273 TGACCGACGACATTGGGGTTCCGGCAATCGGGGCGATCGGGGGGTGTGTGCAG-ACATGATGTGC
323 TGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGG-GTGTGC-GCACATGATGTGC
* * *
13463337 GATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCACTCATCAAACCTTGAGAACTCACA
385 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
13463402 CCCCCTTAAAAAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTAAAATG
450 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
13463467 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTAT
515 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * ** * *
13463532 GCATACCAACAAAAATACAGGGATCACGTCTACAAAGTTTATGGCCAAAACTC-CTTCTGAAAAA
580 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTC-AAAAAA
* * * * * * *
13463596 TTTTTAAAAAAT-CTCGAGCCGTAAAAAGTTTCGAAAATCTTGAAAAATAGAAAACGAGTCCTAT
644 ATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
13463660 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCC
708 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
13463725 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGC
773 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGA
* * * *
13463790 GCATCCCGTCCCTCTGGCTGATGTAGTGCCCGCCT
838 GCATCCCGTCTCTCTGGCCG--G-CGT---AG--T
13463825 GCCCGCCCGGCAGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCC-GC---TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
* * * * *
13463890 GGACCAGACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGAGGGGACCCGGCCGATCCCCGA
62 AGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGACCCGACCGATCCCCGG
* * * *
13463955 CTTGTGCATCCCACCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTTGGC
127 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * ** *
13464020 ATACAGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACTGAGAGTTACAACAGCACATGCAGGGC
192 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGACTGAGGGTTACGGCAGCACATGCTGGGC
* ** *
13464084 TCAGGCATGTGTTGGTGCCGCATTTTTCTTTC-CCGGGGCACCATCGTCGGAGCATCACCGGAGA
257 TCGGGCATGTGTTGGTGCCGCATTTTTC-TTCGCCGGGGCACCATCACCGGAGCATC-GCGGAGA
* *
13464148 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTG
320 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
13464212 CGATGGGTGCTGCTACTTGGCCCTTATCTTGGCCCGCTATCCCTCATTAAACCTCGAGAACTCAC
384 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
13464277 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAAT
449 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13464342 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTG
514 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
13464407 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCAAAAAA
579 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCAAAAAA
13464472 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
644 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
13464537 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATCAA-TTAAAAGCCATAAAAATGGCA
709 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
13464601 TTGGTA-GCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTAAG
774 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAG
* *
13464665 CATCCCATCTCTCTAGCCGGCGTAGT
839 CATCCCGTCTCTCTGGCCGGCGTAGT
* * *
13464691 GCCCGCCCTCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGCC
1 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * *
13464756 CAGACCAAGGGTTACGGTAGTAGGATCGGCAGCACGCAGATGGGGACCAGACCGATCCCCGGCTT
66 CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTT
* * * * * * *
13464821 GCACATCCTGCCCCTCTGGTCGACTGAGCGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATA
130 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
13464886 CGGAGTTCATTACAAGTCTAAGATCGGA-CAGGA-TGAGGGTTGCAGCAGCACATGCTGGGCTCG
195 CGGAGTTCATTCCCAGTCTAAGATCGGATCAGGACTGAGGGTTACGGCAGCACATGCTGGGCTCG
* * * * * * * * *
13464949 GTCATGTGCTGGTGTCGTATTATTCTTCGTCGGGGCACCAACACCGAAGCATCGTCAGAGAACCT
260 GGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCG-CGGAGAACCT
* * *
13465014 GACCGGCAGCGTTGGGGTTCCGATGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
324 GACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
13465079 GGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCC
388 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
13465144 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGG
453 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
13465209 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCA
518 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * * * * *
13465274 TGCCAACCAAAATACAAGGATCACGTCTTCCATGGTTGGGGCCAAAACTCCTTCCAAAAAAATTT
583 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCAAAAAAATTT
* *
13465339 TAAAAAAT-CTCGAACCG-TAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
648 TAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
13465402 ATTAAACTTCACGTGAAAGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGAATTG
712 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
13465467 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCA-CA
777 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-AGCA
*
13465531 TCACGTCTCTCTGGCCGGCGTAGT
841 TCCCGTCTCTCTGGCCGGCGTAGT
* ** * * *
13465555 GCCAGCCCGCCTGGCCGCCCGTCGTTTCATCGAATGGCTTAGGTATAC-GAAGTTCAATCCTAGT
1 ----GCCCG-C---CCG--C-TCGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGT
* * * * * *
13465619 CTAAGATCAAATCGGATCGAGGGTTGCGGCAGCAAGATCGACAGCACACAGAGGGGACCCGACCG
54 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGACCCGACCG
* * * **
13465684 ATCCCCAGCTTGCGCAT-CTGCCCCTCTGGCCAGCTGAGCACCCGCACGCTAATTTCGTGGGTTG
119 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* * *
13465748 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGAGGGTTACGGCAGCACA
184 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGACTGAGGGTTACGGCAGCACA
* ** * *
13465812 TGCTGGGCTCAGGCATGTGTTGGCACCGTATTTTTCTTCGCCTGGGCACCAT--------CAT--
249 TGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCG
** * *
13465867 CGGAGAACCTGATTGGCGGCATTGAGGTTCCGGCGATCGGGGAGGCCGGGGGGGTGTGCAG-ACA
314 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGGTGTGC-GCACA
* * * *
13465931 TGATGTGTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACTTCATCAAACCTCGAG
377 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
13465996 -----A-A----C-T------C------------ACAGGTTTGCTGCCAGTAGCTATTAAAGTGT
442 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
13466032 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTAAAT
507 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * *
13466097 TTTTTTGTGCATGCCAAAAAAAGTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTC
572 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTT
* * *
13466162 CGAAAAAATTTTAAAAAATGCC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGA
637 CAAAAAAATTTTAAAAAAT-CCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
13466226 GTCGTCTT-CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAA
701 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
13466290 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATCGATCCAC
766 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
13466355 AGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
831 GGCTTGAGCATCCCGTCTCTCTGGCCGGCGTAGT
* * * * *
13466389 GCTCGCCTGCCCACTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC
1 G--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
13466454 AGACC-GCATCGAGGGTTGCAGTAGCAGGATCGACAGCACGTATAGGGGGACCCGATCGATCCCT
62 AGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA-GGGGACCCGACCGATCCCC
* *
13466518 GGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGACTTAG
125 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
13466583 GCATACAGACTTCATTCCCAGTCTAAG
190 GCATACGGAGTTCATTCCCAGTCTAAG
13466610 CATACGGAGT
Statistics
Matches: 2440, Mismatches: 296, Indels: 143
0.85 0.10 0.05
Matches are distributed among these distances:
826 1 0.00
827 74 0.03
828 28 0.01
829 73 0.03
830 3 0.00
832 1 0.00
833 3 0.00
834 314 0.13
835 39 0.02
836 1 0.00
846 1 0.00
852 1 0.00
853 1 0.00
857 1 0.00
858 1 0.00
861 5 0.00
862 272 0.11
863 524 0.21
864 76 0.03
865 2 0.00
866 12 0.00
868 6 0.00
869 1 0.00
871 2 0.00
872 3 0.00
873 79 0.03
874 163 0.07
875 101 0.04
876 344 0.14
877 66 0.03
878 235 0.10
879 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (864 bp):
GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGACCCGACCGATCCCCGGCTTG
CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGATCAGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGG
GCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCGGAGAACCTGA
CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCAAAAAAATTTTAA
AAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCCG
TCTCTCTGGCCGGCGTAGT
Found at i:13466622 original size:26 final size:25
Alignment explanation
Indices: 13466583--13466634 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
13466573 GTTGACTTAG
13466583 GCATACAGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCA-TCTAA
* *
13466609 GCATACGGAGTTCATTCCCATCTAA
1 GCATACAGACTTCATTCCCATCTAA
13466634 G
1 G
13466635 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (25 bp):
GCATACAGACTTCATTCCCATCTAA
Found at i:13468501 original size:898 final size:901
Alignment explanation
Indices: 13466742--13468884 Score: 3006
Period size: 897 Copynumber: 2.4 Consensus size: 901
13466732 CGGATCGCCA
* * ** * *
13466742 GAACCCCAATGCC-ACTGGTCAGGTTCTCCGGCGATGCTCTGGTGATGGTGCCCCGACAAAAAAA
1 GAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * *
13466806 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCC-GATCCGATC
65 AATGC-GCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-T-CGATC
* * * *
13466870 TTAGACT-GGAATGAAC-TCTGTATGCTTAGACTGGGAATGAATTTCATATGCCTAACTCAACTC
127 TTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
* * * * *
13466933 ACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAG-AGGGTCGGGATGCACAAG-CAGGGGATCGAT
191 ACGAAACGAGCGTGCGGGAGCTCAGCCGGCCAGAAGGG-CAGGATGCGCAAGTC-GGGGATCGGT
* * * *
13466996 CGGGTCCCCCTCGGCATGCTGTCGATCCTACAGTAGCAACCCTCGGTCCTGGTTTGATCTTAGAC
254 CGGGTTCCCCTCTGCATGCTGTCGATCCTACACT-GCAACCCTCGGT-CTGGTCTGATCTTAGAC
* *
13467061 TGGGAATGAACTCCGTATGCCTAAGCCAACCGAGGAAACGAGCGGGCAAGCGGGCGGACGGGTGG
317 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGG-AAGC-GGCGGACGGGTGG
*
13467126 GCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
380 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* ** *
13467191 GGCACATCTTCATATTTTTGTGTGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCC
445 GGCACATCTTCATATTTCTGCCTACCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCC
* *
13467256 CTTAAGCCTTCAAGTGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAA
510 CTTAAGCCTTCAAGAGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTAACGATTTTTGAAA
* * * * *
13467321 CTTTTTACAGCTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
575 ATTTTTACAGCTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGAC
* * * *
13467386 GTGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCAAAAAATTCGAAATGTACAAGAT
640 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAATGTACAAGAT
* *
13467451 TTTGTGACCATTTGAAAAAAGTATCCCTATTTCAGACACTTTAATGGCTACTGGCGGCAAACCTG
705 TTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
13467516 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
770 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCAA
* * *
13467581 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCG
835 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCGGCCCCC-CAATCA
*
13467646 TCG
899 CCG
* * *
13467649 GAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAA
1 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* *
13467714 ATGCTGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAGCCATCGGTCCAGTCGGATCTT
66 ATGC-GCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTC-GATCTT
* * * *
13467779 AGACTGGGAATTAACTTCGTATGCTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
129 AGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACG
* * * *
13467844 AAACGAGTGTGCGGGTGCTCTGCCGACCAGAAGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGT
194 AAACGAGCGTGCGGGAGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGT
* * * *
13467909 TCCCCTCTGCATGCTGCCGATCCTACAACTGCAACCCTGGGTCTGATCCGATCTTAGACTGGGAA
259 TCCCCTCTGCATGCTGTCGATCCTAC-ACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAA
* **
13467974 TGAACTCCGTATGCCTAAGCCTATTGACGAAACGAAC-GG-A-C-G-GG-CGGGTGGGCACTACG
323 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGAAGCGGCGGACGGGTGGGCACTACG
* *
13468033 TCGGCCAGAGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
388 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
13468098 TTCATATTTCTGCCTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCC
453 TTCATATTTCTGCCTACCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * *
13468163 TTCACA-AGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTAATGATTTTTGAAAATTTTTG
518 TTCA-AGAGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTAACGATTTTTGAAAATTTTTA
* *
13468227 CGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAG-CCCAAACTTGGTAGACATGATCC
582 CAGCTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCC
* * *
13468291 TTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
647 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAATGTACAAGATTTTGTGA
*
13468356 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
712 CCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
13468421 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGG
777 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGG
* *
13468486 GCCAAGTACCAGCACCCATTGCACATCATGTGCGTAAACCCCCCGGCCCCCCAATCACCG
842 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCGGCCCCCCAATCACCG
* **
13468546 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-AGCGATGGTGCCTCGGTGAAGAAA
1 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAA
* * *
13468610 AATGCGACACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGATTCGATCT
65 AATGCG-CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CAGTCGATCT
* * *
13468675 TAGACTGGGAAAGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAC
128 TAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAC
* * * * * *
13468740 GAAACGAGCATGCGGGAGCTCAGCCGGCCA-AAGGGGCAGGATGCGTAATTCGAGGATTGGCCGG
193 GAAACGAGCGTGCGGGAGCTCAGCCGGCCAGAA-GGGCAGGATGCGCAAGTCGGGGATCGGTCGG
* * * * * * * *
13468804 G-TCCTCTTTTGTATGCTGTCGATCCTGCTACCGCAATCATCGGTCCGGTCTGATCTTAGACTGG
257 GTTCC-CCTCTGCATGCTGTCGATCCTAC-ACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
13468868 GAATGAACTCCGTATGC
320 GAATGAACTCCGTATGC
13468885 TTAGACTGGG
Statistics
Matches: 1097, Mismatches: 125, Indels: 38
0.87 0.10 0.03
Matches are distributed among these distances:
896 7 0.01
897 289 0.26
898 258 0.24
899 225 0.21
900 3 0.00
901 1 0.00
903 1 0.00
904 1 0.00
906 3 0.00
907 166 0.15
908 134 0.12
909 9 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
ATGCGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCGATCTTAG
ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGAGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTTC
CCCTCTGCATGCTGTCGATCCTACACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGAAGCGGCGGACGGGTGGGCACTACGCCG
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCCTACCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
AAGAGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTAACGATTTTTGAAAATTTTTACAGC
TCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAATGTACAAGATTTTGTGACCAT
TTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCGGCCCCCCAATCACCG
Found at i:13468887 original size:26 final size:26
Alignment explanation
Indices: 13468858--13468962 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
13468848 CCGGTCTGAT
13468858 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13468884 CTTAGACTGGGAATGAACTCCGTTTG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13468910 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13468936 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
13468962 C
1 C
13468963 CTAAGTCAAC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13469089 original size:237 final size:237
Alignment explanation
Indices: 13468673--13469114 Score: 562
Period size: 237 Copynumber: 1.9 Consensus size: 237
13468663 CTGATTCGAT
* *
13468673 CTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
* * * ** * * * *
13468738 ACGAAACGAGCATGCGGGAGCTCAGCCGGCCAAAGGGGCAGGATGCGTAATTCGAGGATTGGCCG
66 ACGAAACAAGCATGCGAGAGCTCAGCCAGCCAAAGGGGCAGGACACGCAAGTCGAGGATCGACCG
* * * ** * * * *
13468803 GGTCCTCTTTTGTATGCTGTCGATCCTGCTACCGCAATCATCGGTCCGGTCTGATCTTAGACTGG
131 GGTCCTCCTCTGCATGCTACCAATCCTACTACCGCAACCATCAGTCCGGTCTGATCTTAGACTGG
13468868 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTTTG
196 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTTTG
* **
13468910 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
1 CTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
* * * * * * * *
13468975 ACGAAATAAGCGTGCGAGTGCTCAGCCAGCTAGAGGGGCGGGACACGCAAGTCGGGGATCGATCG
66 ACGAAACAAGCATGCGAGAGCTCAGCCAGCCAAAGGGGCAGGACACGCAAGTCGAGGATCGACCG
* *
13469040 GGTACC-CCTCTGCGTGCTACCAATCCTACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTG
131 GGT-CCTCCTCTGCATGCTACCAATCCTACTACCGCAACCATCAGTCCGGTCTGATCTTAGACTG
*
13469104 GGAATTAACTC
195 GGAATGAACTC
13469115 TATATGCCTA
Statistics
Matches: 170, Mismatches: 34, Indels: 2
0.83 0.17 0.01
Matches are distributed among these distances:
237 168 0.99
238 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (237 bp):
CTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
ACGAAACAAGCATGCGAGAGCTCAGCCAGCCAAAGGGGCAGGACACGCAAGTCGAGGATCGACCG
GGTCCTCCTCTGCATGCTACCAATCCTACTACCGCAACCATCAGTCCGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTTTG
Found at i:13469858 original size:26 final size:26
Alignment explanation
Indices: 13469807--13469859 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13469797 CCAGTCCGAT
*
13469807 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
13469833 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
13469859 C
1 C
13469860 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13471641 original size:26 final size:26
Alignment explanation
Indices: 13471601--13471653 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13471591 CCGGTCTGAT
*
13471601 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
13471627 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
13471653 C
1 C
13471654 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:13472209 original size:902 final size:900
Alignment explanation
Indices: 13468910--13475444 Score: 9056
Period size: 903 Copynumber: 7.3 Consensus size: 900
13468900 ACTCCGTTTG
* *
13468910 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
** * * * ** *
13468975 ACGAAATAAGCGTGCGAGTGCTCAGCCAGCTAGAGGGGCGGGACACGCAAGTCGGGGATCGATCG
66 ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * *
13469040 GGTACC-CCTCTGCGTGCTACCAATCCTACTACCGCAACCCTC-AGTCCGGTCTGATCTTAGACT
131 GGT-CCACCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGA-TCTGGTCTGATCTTAGACT
* ** * * *
13469103 GGGAATTAACTCTATATGCCTAAGCCAACCGACCAAACGAGCTGGCGGGC-AGC--G--GGCACT
194 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACT
* *
13469163 ACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
259 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * * *
13469228 ATCTTCATATTTCTGCATACTAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAA
324 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
13469293 GCCTTCACGTGAAGTTTCATGGCAAGATGGCTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
389 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * * *
13469358 TGCAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCGAAACTTGGTGGACGTGAT
454 TACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC-AAACTTGGTAGACATGAT
* * *
13469423 CCTTGTATTTTTGTTGGCATGCATAGAAAAATTAAGCTAAAAACTTGAAGTGTACAAGATTTTGT
518 CCTTGTATTTTTGTTGGCATGCACA-AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
13469488 GACCATTTGAAAAAAGTCTCCCCATTTTAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAAA
582 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * ** * *
13469553 TCTCAAATGCTCTTTAAAGGGGTGGGAGTTCTTGAGGTTTGATGAGGGATAGGGAGCCAACATAA
647 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
13469618 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCG-CTGGA
712 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC-GGA
* * ** * *
13469682 ACCCCAATGCCGTCGGTCAGGTTCTTTGGCGATGCTCCGTCGATGGTGTCCCGACGAAGAAAAAT
776 ACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * ** *
13469747 GTGGCACAAACACATGCCCGAGCCCAGCATGTGCTGCCTCAACCCTCAATCCAGTCCGAT
841 GCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * **
13469807 CTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTATATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
13469872 ACGAAACGAGCGTGCGGGCGTTCAGCCGACCAGAGGGGCAGGATGCGTAAGCTGGGGATCGACCA
66 ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * * *
13469937 GGTCCCCCTCTACATGCTGCCGATCCTACTGTCGCAACCCTC-AGTCCGATCTGATCTTAGACTA
131 GGTCCACCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGA-TCTGGTCTGATCTTAGACTG
* * * **
13470001 GGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGACAAGCGGGCGGGCAGGCACTA
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTA
* * *
13470066 CGTCGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
260 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
13470131 TCTTTATATTTCTACCTGCGAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAG
325 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
** * * *
13470196 CCTTCACAAGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTT
390 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* ** * *
13470261 GCGGTTCAAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTAGCCCAAACTTGGTAGACATGATCC
455 ACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAACTTGGTAGACATGATCC
*
13470326 TTGTATTTTTGTTGGCATGCATAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
520 TTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
13470391 CCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
584 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
13470456 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
649 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
13470521 GCCAAGTACCAGCACCAATTGCACATCATGTGCGCAAACCCCCCGG-CCCCCAATCGTCGGAACC
714 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACC
* * *
13470585 CCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCA
779 CCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
* * * ** * *
13470650 ACACCAACACATGCTCGAGCCCAGAATGTGCTGCCACAACCCTCGGTTTGATCCAAT
844 GCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * * * *
13470707 CCTAGACTGGGAAAGAACTCAGTTTGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
13470772 ACGAAACGAGCATGCGGGAGCTCAGCCGACCAAAGGGGCGGGATGCGCAAGCCGAGGATCGGTCG
66 ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * *
13470837 GGTCCACCTTTGTGTGCTGCCGATCCTACTGCCACAACCGTCGGTCTAGTCTGATCTTAGACTGG
131 GGTCCACCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGG
* *
13470902 GAATGAACTCCGTATGCCTAAGCCAACCAAC-AAA--A-CGGGCGGGCGGGC--G--GGCACTAT
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTAC
* *
13470959 GCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACAT
261 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
13471024 CTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
326 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* ** * *
13471089 ATTCACAAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
391 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
** *
13471154 CGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCAAACTTGGTAGACATGATCCT
456 CGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAACTTGGTAGACATGATCCT
* *
13471219 TGTATTTTTATTGGCATGCACAAAACATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
521 TGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
13471284 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
585 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
13471349 CAAATGCTCTTTAAGGGGGTGTGGGTTCTCAAGGTTTGATGAGGGATAAGGGGTCAATATAAGGG
650 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*
13471414 CCAAGGACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
715 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACC
* * * **
13471479 CCAATGTCGCCGATCAGGTTCTCCGGTGTTGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCG
779 CCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
* * * * *
13471544 GCACCAACACATGCCCGAGCCCAGTATGTGCTACCACAACCCTTGGACCGGTCTGAT
844 GCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
* *
13471601 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAAGTTAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
** ** * *
13471666 ATAAAACGAGCGTGCGGGTGCTCAATCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCA
66 ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * * *
13471731 GCTCGACCTCTGTGTGCTACCGATCCTACTACCACAACCCTCGATCTAGTCTGATCTTAGACTGG
131 GGTCCACCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGG
* * *
13471796 GAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGGGCGGGCAGGCACTAC
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTAC
*
13471861 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACAT
261 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
13471926 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
326 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
13471991 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCCATTTTTCACGA-TTTTCAAAATTTTTA
391 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * *
13472055 CGGTTGGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCGCCAAACTTGGTAGACGTGATGC
456 CGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC-CCAAACTTGGTAGACATGATCC
*
13472120 TTGTATTTTTGTTGGCATGCACAAACAAATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGA
520 TTGTATTTTTGTTGGCATGCACAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
13472185 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGTTACTGGCAGCAAACCTGTAAAATC
584 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
13472250 TCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
649 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
13472315 GCCTAGTACCAGCACCCACCGCAAATCATGTGCGCACACCCCCCCGCGGCCCCCCGATCGTCGGA
714 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCC-CGGCCCCCCGATCGTCGGA
* *
13472380 ACCCCAATGCCGCC-AGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGTCCCGACGAAGAAAAA
776 ACCCCAATGCCGCCGA-TCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * * *** *
13472444 TGCGGCA-CAACACATGCCCGAGCCTAGCTTGTGCTACTGTAACCCTTGGAT-CGGTCCGAT
840 TGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGG-TCCGGTCCGAT
* * * *
13472504 CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCTGTATGCCTAAGTTAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
13472569 ACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCAGGATGCGCTAGCCGGGGATCGATCG
66 ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * *
13472634 GCTCGACCTCTACGTGCTGCTGATCCTACTGCTGCAACCCTCGAACTGGT-TCGATCTTAGACTG
131 GGTCCACCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCT-GATCTTAGACTG
* * * * *
13472698 GGAATGAACTCCGTATGCCTAAGCCAACTGACGGAATGAGCGGGCGGGCGGGCGGGTAGGCATTA
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTA
* **
13472763 TGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAATGTGGTAGGTGGGTTTAGGCACA
260 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* **
13472828 TCTTCATATTTCTATGTGCCAATGCCATTTTTATCACTTGTAAATTCATACAATGGTCCCTTAAG
325 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
13472893 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
390 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * *
13472958 ACGGCTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGCCATGATC
455 ACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-CCCAAACTTGGTAGACATGATC
* *
13473023 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTCGTG
519 CTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
13473088 ACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAAT
583 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
13473153 CTCAAATACTCTTTAAGGGGGTGTGAGTTCTCAAGATTTGATGAGGGATAGGGGGCCAATATAAG
648 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
13473218 GGCCAAGTACCAGCACCCATCACACATCATGTGTGCAGACCCCCCGGCCCCCCGATCGTCGGAAC
713 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAAC
* * * * **
13473283 CCTAATGCC-CC-AGTCAGGTTCTCCGGCGATGC-CCTAGCGATGGCGACCCGGTGAAGAAAAAT
778 CCCAATGCCGCCGA-TCAGGTTCTCCGGCGATGCTCC-GGCGATGGTGCCCCGACGAAGAAAAAT
* * * *
13473345 GTGGCACCAACACATGCCCAAGCCTAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGAT
841 GCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
13473405 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
13473470 ATGAAAAGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCG
66 ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * *
13473535 GGTCCACCTTTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAG
131 GGTCCACCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGG
** * *
13473600 GAATGAACTCTTTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCTGGCGGGTA
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGC----A
13473665 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
257 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
13473730 ACATCTTC--ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
322 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
13473793 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTATCTATTTATCACGATTTTTGAAACTT
387 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * ** * *
13473858 TTTACGGTTCAGGATTTTTTTTAAATTTTTTCG-AAGCTGTTTTGGCCCCAAACCTGGTAGACGT
452 TTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-CCCAAACTTGGTAGACAT
*
13473922 GATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
515 GATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
13473987 TGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGAAAACCTATA
579 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* **
13474052 AAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGAT-AGGGATAGAAGGCCAATA
644 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
13474116 TAAGGGCCAAGTACTAGCACCCATCCCACATCATGTGCGCACACCACCACCGGCCCCCCCGATTG
709 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CC-CCGG-CCCCCCGATCG
* * *
13474181 -CTGGAACCCCAATGCCGCCGGTCAAGTTCT-C--CGA--------CGATGGTCCCCCGACGAAG
771 TC-GGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAG
* * * * * * * *
13474234 AAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGATTCAA
835 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGA
13474299 T
900 T
* * * *
13474300 CTTAGACT-GGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTTAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
13474364 ACGAAACAAGCGTGCGGGTGCTCAGTCGGCTAGAGTGGTGGGATGCGCAAGCTGGGGATCG-GCG
66 ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * * *
13474428 GGATCCCCCTCTGTGTGCTGCCGATCCTACTACCGTAACCCTCGGTCTGGTCCGATCCTAGACTG
131 GG-TCCACCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTG
* * * * * * *
13474493 GGAATGAACTCCGTATACCTAAGCCAACCAATGAAACGATCGGGCAGGTGGGCGGGCGGGGCACT
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC-AGGCACT
* * * * *
13474558 ATGCCGGCCATAGAGACGAGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGTCAC
259 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
13474623 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAA
324 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
13474688 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAGTTTTCACAATTTTTAAAACTTTT
389 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
13474753 TACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTCGTAGACATGAT
454 TACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-CCCAAACTTGGTAGACATGAT
13474818 CCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
518 CCTTGTATTTTTGTTGGCATGCACA-AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
13474883 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
582 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
13474948 CCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
647 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
13475013 GGGCCAAGTACCAGCACCCATTGCACATCAGGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAA
712 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAA
* * ** *
13475078 CCCCAAAGTCGCCGGA-CAGGTTCTCTTGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
777 CCCCAATGCCGCC-GATCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * ** * ** ***
13475142 GCGACACCGACACATGCCCGAGCTCAGCATGTGCTATCGCAACCCTCGGTCCAATATAAT
841 GCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * *
13475202 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAGCCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
*
13475267 ACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
66 ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * * *
13475332 GATCCTCCTCTACGTGCTACCAATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGG
131 GGTCCACCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGG
* * *
13475397 GAATGAACTTCGTATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGC
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
13475445 ACTACGCCAG
Statistics
Matches: 5038, Mismatches: 531, Indels: 132
0.88 0.09 0.02
Matches are distributed among these distances:
891 101 0.02
892 503 0.10
893 323 0.06
894 591 0.12
895 86 0.02
896 12 0.00
897 204 0.04
898 15 0.00
899 5 0.00
900 363 0.07
901 584 0.12
902 788 0.16
903 961 0.19
904 391 0.08
905 101 0.02
906 10 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
GGTCCACCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTAC
GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
CGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAACTTGGTAGACATGATCCT
TGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCC
AATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
ACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:13472533 original size:26 final size:26
Alignment explanation
Indices: 13472504--13472556 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13472494 TCGGTCCGAT
13472504 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGCAATGAACTCCGTATG
*
13472530 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
13472556 C
1 C
13472557 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:13473434 original size:26 final size:26
Alignment explanation
Indices: 13473405--13473457 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13473395 CTGGTCCGAT
13473405 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13473431 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13473457 C
1 C
13473458 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13474350 original size:26 final size:25
Alignment explanation
Indices: 13474300--13474351 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
13474290 CTGATTCAAT
* *
13474300 CTTAGACTGGAATGAACTTCGTATG
1 CTTAGACTGGAATGAACTCCATATG
*
13474325 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACT-GGAATGAACTCCATATG
13474351 C
1 C
13474352 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:13476879 original size:26 final size:26
Alignment explanation
Indices: 13476830--13476880 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13476820 AGTCTGATCT
*
13476830 TAGACTGGGAATGAACTCTATATGCA
1 TAGACTGGGAATGAACTCCATATGCA
* *
13476856 TAGACTGTGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
13476881 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:13477968 original size:717 final size:717
Alignment explanation
Indices: 13476993--13479179 Score: 3685
Period size: 717 Copynumber: 3.1 Consensus size: 717
13476983 CTGCTACCAT
* *
13476993 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGATGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
* * * * *
13477058 C-AAGCGGGCGGGC--G--GGCGGGCACTACGTCGGCCAAAGAGACGAGATGCGCAAGCCGTGGA
66 CGAA-CGGGTGGGCGGGTAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGA
* * ***
13477118 TCAATACGGTGGTAGGT-ATGTTCAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
130 TCAATATGGTGGTAGGTGA-GTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
13477182 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGCCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGCCAAGACGACTCGT
13477247 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
*
13477312 AGTTCTGGTCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAACAATTCA
324 AGTTTTGGTCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAACAATTCA
13477377 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
13477442 TTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGA
454 TTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGA
13477507 GGTTTGTTGAGGGATAGGGGCCAATATAAGGGCCAATACCAGCACCCATTGCACATCATGTGCGC
519 GGTTTGTTGAGGGATAGGGGCCAATATAAGGGCCAATACCAGCACCCATTGCACATCATGTGCGC
13477572 ACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCT
584 ACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCT
13477637 CCGGCGATGGTGCCCCGGCGGAGAAAAATACGACACCAACACATGCTCGAGCCCAGCATGTGCTG
649 CCGGCGATGGTGCCCCGGCGGAGAAAAATACGACACCAACACATGCTCGAGCCCAGCATGTGCTG
13477702 CCTC
714 CCTC
*
13477706 AACCCTCGGTCTGGTCCGATCTTAGGCTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
13477771 CGAACGGGTGGGCGGGTAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGAT
66 CGAACGGGTGGGCGGGTAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGAT
13477836 CAATATGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGG
131 CAATATGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGG
13477901 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGCCAAGACGACTCGTTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGCCAAGACGACTCGTTT
13477966 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
261 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
13478031 TTTTGGTCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAACAATTCAGC
326 TTTTGGTCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAACAATTCAGC
13478096 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
391 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
13478161 AATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCAAGG
456 AATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
13478226 ATTGTTGAGGGATAGGGGCCAATATAAGGGCCAATACCAGCACCCATTGCACATCATGTGCGCAC
521 TTTGTTGAGGGATAGGGGCCAATATAAGGGCCAATACCAGCACCCATTGCACATCATGTGCGCAC
*
13478291 ACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC
586 ACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCC
13478356 GGCGATGGTGCCCCGGCGGAGAAAAATACGACACCAACACATGCTCGAGCCCAGCATGTGCTGCC
651 GGCGATGGTGCCCCGGCGGAGAAAAATACGACACCAACACATGCTCGAGCCCAGCATGTGCTGCC
13478421 TC
716 TC
*
13478423 AACCCTCGGTCTGGTCCGATCTTAGGCTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
13478488 CGAACGGGTGGGCGGGTAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGAT
66 CGAACGGGTGGGCGGGTAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGAT
13478553 CAATATGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGG
131 CAATATGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGG
* * * *
13478618 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTTGTTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGCCAAGACGACTCGTTT
* * * *
13478683 TCTATTTTTCACGATTTTTGAAAGTTTTTACGATTC-AGGATTTTTTAAAATTTTTTTGGAAGGT
261 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGA
* * * * *
13478747 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGGACAAAAAAATTCAG
325 GTTTTGGTCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAACAATTCAG
* *
13478812 CTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* ** *
13478877 TAAGGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
455 TAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * * * *
13478942 TTTTGATGAGGGATAAGGGGCAAATATAAGGGCCAAGTACCAGCATCTATCGTACATCATGTGCG
520 GTTTGTTGAGGGAT-AGGGGCCAATATAAGGGCCAA-TACCAGCACCCATTGCACATCATGTGCG
*** * * *
13479007 CACA-CCCCCCGG-CCTGTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGC
583 CACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGC
* ** * * *
13479070 TCCAGCGATGGTGCCCCAACGAAGAAAAATGC-AGCACCAGCACATGC-CTGAGCCCAGCATGTG
648 TCCGGCGATGGTGCCCCGGCGGAGAAAAATACGA-CACCAACACATGCTC-GAGCCCAGCATGTG
* *
13479133 CTGTCGC
711 CTGCCTC
* * *
13479140 AACCCTGGGTTTGGTCTGATCTTAGACTGGGAATGAACTC
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
13479180 CGTAAGCTTA
Statistics
Matches: 1399, Mismatches: 64, Indels: 18
0.94 0.04 0.01
Matches are distributed among these distances:
713 71 0.05
714 2 0.00
715 1 0.00
716 3 0.00
717 1265 0.90
718 29 0.02
719 28 0.02
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (717 bp):
AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
CGAACGGGTGGGCGGGTAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGAT
CAATATGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGCCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGTCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAACAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGTTGAGGGATAGGGGCCAATATAAGGGCCAATACCAGCACCCATTGCACATCATGTGCGCAC
ACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCC
GGCGATGGTGCCCCGGCGGAGAAAAATACGACACCAACACATGCTCGAGCCCAGCATGTGCTGCC
TC
Found at i:13481850 original size:26 final size:26
Alignment explanation
Indices: 13481814--13481864 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13481804 CTGGTCTGAT
*
13481814 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13481840 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
13481865 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13482147 original size:882 final size:881
Alignment explanation
Indices: 13480056--13484399 Score: 5638
Period size: 882 Copynumber: 4.9 Consensus size: 881
13480046 CTGGTTCGAT
* * *
13480056 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCCACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-GGTCAGC
* * * * * * *
13480121 CGGCCAGAGAGGCGGGATACGTAAGCTGGGGATCGACCGGGACCCCTTCTGCGTGCTGCCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* **
13480186 TACTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * *
13480251 CCGACAAAACGAACGGGGGGGTGGGCAGGCGGGCATTACACCGGCTGGAGAGACGGGATGCGCAA
195 CCGATGAAACG-A---GCGGGCGGGCA----GGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
* *
13480316 GCCTTGGATCGATATGG-TGGTAGGTGGGTTTAGGGACATCTTCATATTTCTACATGCCAATGCC
252 GCCGTGGATCGATA-GGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
13480380 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
13480445 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
381 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
13480510 TTGGAAGGAGTTTTCAG-CCCAAACTTGGTAAACGTCATCCTTGTATTTTTTTTGGCATGCACAA
446 TCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
13480574 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAATTGTCCCCATT
510 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
13480639 TCAGACACTTTAATGGCCACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
575 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * * *
13480704 AGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATAGAAGGGCCAAGTACTAGCTCCCATCACAT
640 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * ** **
13480769 ATCATGTGCGAACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
705 ATCATGTGCGCACACCCCCCGACCCCCCGATCACCGGAACCCCAATGCCGCAAGTCAGGTTCT-C
* * * * *
13480834 GACGATGCCCTGGCGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAACACTTGCCCAAGCCTAG
769 --CGA--------CGATGGTGCCC-GACGAAGAAAAATGCGGCACCAACACATGGCCGAGCCCAG
* * *
13480899 CATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATACG
823 CATGTGCTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
13480958 CTTACACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCCAAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGGTC-AGC
** * * *
13481023 CGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
13481088 TACTACCACAACCGTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
130 TACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
13481153 CCGACGAAATAAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC-TCGG
195 CCGATGAAACGAGCGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGT-GG
* * * *
13481217 ATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTAT
259 ATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
13481282 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *** *
13481347 TTTCTATTTTTCACGATTTTTGAAACTTTTTGTTGTTCGGGATTTTGTAAAATTTTTTCGGAAGG
389 TTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
13481412 AGTTTCGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
** * * * * *
13481477 GCTAAGTACTAGAAGTGTACAAGATTGTATGACAATTTGAAAAAAGTGTCCCCATTTTAGACACT
519 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
13481542 TTAATGGCTACTGGCAGCAAA-CTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCAT-G
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCG
*
13481605 AGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
13481670 CGCACACCCCCCGACCCCCCGATCGCCGGAACCCTAATGCTGTAAGTCAGGTTCTCCGACGATGG
713 CGCACACCCCCCGACCCCCCGATCACCGGAACCCCAATGCCGCAAGTCAGGTTCTCCGACGATGG
* * * * * * *
13481735 TGACCCGACAAAGAAAAATGCGGCATCAGCACATGGCCGAGCCCAGTATGTGCTTTCATAATCCT
778 TG-CCCGACGAAGAAAAATGCGGCACCAACACATGGCCGAGCCCAGCATGTGCTGTCACAACCCT
*
13481800 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
842 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
13481840 CTTAGACTGGGAATGAACTCCGTATCCCTAAGTCAACCCACGAAACAAGGGTACGGGCGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-GGTCAGC
* * * * * *
13481905 CGACCAGAGGGGCGGGATGCGTAAGCCAGGGATCAATCGGGTCCCCCTCTGCATGCTGTCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
13481970 TACTGCTGTAACCCTCGGTCTGATCCAATCTTCGATTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13482035 CCGATGAAACGAGCAGGTGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
195 CCGATGAAACGAGCGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGA
* *
13482100 TCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATG
260 TCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* *
13482165 GCTTGTAATTTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * *
13482230 TTCTATTTTTCAGGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTTAAATTTTTTTGGAAGGA
390 TTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
**
13482295 GTTTTGGCCCCAAACTTGGTAGATATGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAG
455 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
13482359 CTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAGAAAAGTGTCCCCATTTCAGACACTT
520 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
13482424 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
585 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
13482489 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
650 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
*
13482554 CACAACCCCCCGACCCCCCGATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGGT
715 CAC-ACCCCCCGACCCCCCGATCACCGGAACCCCAATGCCGCAAGTCAGGTTCTCCGACGATGGT
* * * * *
13482619 GCCCCAGCGAAGAAAAATGTGGCACCAACACATGACCGAGCCCAGCATGGGCTGTCGCAA-CC-C
779 GCCCGA-CGAAGAAAAATGCGGCACCAACACATGGCCGAGCCCAGCATGTGCTGTCACAACCCTC
13482682 --TC--G---G----T---CT-GG--T---CT---TAT-
843 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
13482697 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGGGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGG-TCAGC
* * * ** * * *
13482762 CGGCCAGAGGGGCGGGATGGGCAAGTCAGGGATCGGTCGAGTCCCCTTCTGCGCGCTGTCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * ** * * *
13482827 TGCTGCCATAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCTTATGCCTAACCCAA
130 TACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13482892 CCGATGAAACAAGTGGGCAGACGGGCGGGCGGGCACTACGCCAGCTAGAGAGACGGGATGCACAA
195 CCGATGAAAC------G-AG-CGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
* *
13482957 GCCATGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
252 GCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
13483022 -TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTC-CTGTGAAGTTTCATGGCAAGA
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCATGGCAAGA
* * * *
13483085 TGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTT
381 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
13483150 TCGAAAGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
446 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
13483215 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTG-AAAAAGTGTCCCCATTT
511 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
13483279 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
576 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
13483344 GTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
641 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
13483409 TCCTATGCGCACACCCCCCGGCCCCCCGATCACTGGAACCCCAATGCCGCTGGTCAGGTTCTATG
706 TCATGTGCGCACACCCCCCGACCCCCCGATCACCGGAACCCCAATG-C-C--G-CAAG-TC-A-G
* * * *
13483474 GCAATGCTCCGAAGATGGTGCCTCGACGAAGAAAAATGCAGCACCAACACAT-GCTCGAGCCTAG
763 G---TTCTCCGACGATGGTGCC-CGACGAAGAAAAATGCGGCACCAACACATGGC-CGAGCCCAG
* * ** * *
13483538 CATATGCTGTCGCAACCCTCGAACCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
823 CATGTGCTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
13483597 CTTAGACTGGGAATGAACTCCGTCTGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-GGTCAGC
* * * *
13483662 CGGCCAGAGGGGTGGGACGCGCAAGCCGGGGATCGGCCGGGTCCCCCTTTGCGTGCTGTCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * **
13483727 TGCTACCGCAACCCTCAGTCTGGTCCCATCTTAGACTGGGACTGAACTCCACATGCCTAAGCCAA
130 TACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
13483792 CCGATGAAACAAAAGGGCGGGCAGGCGGGTAGTACGCTGGCTAGAGAGACGAGATGCGCAAGCCG
195 CCGATGAAACGAGCGGGCGGGCAGGC----ACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCG
* * **
13483857 TGGATCGAAAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
256 TGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
13483922 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
13483987 CGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-GGA
386 CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
*
13484051 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAAT
451 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
13484116 TCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
516 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
13484181 ACTTTAATGGCTATTGGTAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * *
13484246 C-ATGGTTTAATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCGCCCATTGCACATCCT
646 CGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * ** * * * * *
13484310 GTGTGCACACCCCCTC-AGCCCCGTCGATCGTCGGAACCCCAATGACACCAGTTAGGTTCTCCGG
710 GTGCGCACACCCCC-CGA-CCCC-CCGATCACCGGAACCCCAATGCCGCAAGTCAGGTTCTCCGA
*
13484374 CGATGCT--CCGACGAAGAAAAATGCGG
772 CGATGGTGCCCGACGAAGAAAAATGCGG
13484400 GCACTACGCT
Statistics
Matches: 3036, Mismatches: 332, Indels: 165
0.86 0.09 0.05
Matches are distributed among these distances:
856 2 0.00
857 178 0.06
858 3 0.00
861 2 0.00
863 34 0.01
864 327 0.11
865 147 0.05
866 2 0.00
867 3 0.00
868 2 0.00
869 2 0.00
870 2 0.00
871 2 0.00
873 1 0.00
874 62 0.02
875 4 0.00
876 1 0.00
877 1 0.00
878 1 0.00
879 2 0.00
880 1 0.00
881 88 0.03
882 655 0.22
883 107 0.04
885 17 0.01
886 1 0.00
887 1 0.00
888 11 0.00
890 5 0.00
891 4 0.00
892 13 0.00
893 149 0.05
894 353 0.12
896 194 0.06
897 274 0.09
898 13 0.00
899 20 0.01
900 173 0.06
901 3 0.00
902 176 0.06
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (881 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGGTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
ACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGATGAAACGAGCGGGCGGGCAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGACCCCCCGATCACCGGAACCCCAATGCCGCAAGTCAGGTTCTCCGACGATGGTGC
CCGACGAAGAAAAATGCGGCACCAACACATGGCCGAGCCCAGCATGTGCTGTCACAACCCTCGGT
CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:13484927 original size:581 final size:580
Alignment explanation
Indices: 13483824--13484968 Score: 1862
Period size: 581 Copynumber: 2.0 Consensus size: 580
13483814 AGGCGGGTAG
* *
13483824 TACGCTGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGGCA
1 TACGCTGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGGCA
* * *
13483889 CATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTACGTGCCAAAGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTA
13483954 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTT
* *
13484019 TTACGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
196 TTACGGTTCGAGATTTTTTAAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
* *
13484084 CCTTGTATTTTTGTTGGCATGCGCAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGT
261 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
13484149 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTAGCAAACCTCTAAAA
326 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTCTAAAA
* *
13484214 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCATGGTTTAATGAGGGATAGGGGGTCAATATAA
391 TCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCATGGTTTAATGAGGGATAGGGGGCCAATATAA
* * * * * *
13484279 GGGCCAAGTACCAGCGCCCATTGCACATCCTGTGTGCACACCCCCTCAGCCCCGTCGATCGTCGG
456 GGGCCAAGTACCAGCACCCATGGCACATCATGTGTGCACACCCCCCCAGCCCCGCCGATCATCGG
* *
13484344 AACCCCAATGACACCAGTTAGGTTCTCCGGCGATGCTCCGACGAAGAAAAATGCGGGCAC
521 AACCCCAATGACACCAGTCAGGTTCTCCAGCGATGCTCCGACGAAGAAAAATGCGGGCAC
* * * *
13484404 TACGCTGACCAGAGAGACGGGATGCGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
1 TACGCTGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGGCA
* *
13484469 CATCTTCATATTTCTACGTGCCAAAGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCTTTC
66 CATCTTCATATTTCTACGTGCCAAAGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTA
* *
13484534 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTT
* *
13484599 TTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATATGA
196 TTACGGTTCGAGATTTTTTAAAATTTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
* *
13484664 TCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
260 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
13484729 TGGCCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAA
325 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTCTAAA
* * *
13484794 ATCTCGAATGCTATTTAAGGGGGTGTGAGTTCTTGA-GGTTTGATGAGGGATAGGGGGCCAATAT
390 ATCTCAAATGCTATTTAAGGGGGTGTGAGTTC-TCATGGTTTAATGAGGGATAGGGGGCCAATAT
* *
13484858 AAGGGCCAAGTACCAGCACCCGTGGCACATCATGTGTGCACACCCCCCCTGGCCCC-CCGATCAT
454 AAGGGCCAAGTACCAGCACCCATGGCACATCATGTGTGCACACCCCCCC-AGCCCCGCCGATCAT
* * *
13484922 CGGAACCCCAATGCCGCCAGTCAGGTTCTCCAGTGATGCTCCGACGA
518 CGGAACCCCAATGACACCAGTCAGGTTCTCCAGCGATGCTCCGACGA
13484969 TGGTGCCCCG
Statistics
Matches: 519, Mismatches: 43, Indels: 5
0.92 0.08 0.01
Matches are distributed among these distances:
580 210 0.40
581 302 0.58
582 7 0.01
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (580 bp):
TACGCTGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTACGTGCCAAAGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTT
TTACGGTTCGAGATTTTTTAAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTCTAAAA
TCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCATGGTTTAATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATGGCACATCATGTGTGCACACCCCCCCAGCCCCGCCGATCATCGG
AACCCCAATGACACCAGTCAGGTTCTCCAGCGATGCTCCGACGAAGAAAAATGCGGGCAC
Found at i:13485080 original size:26 final size:26
Alignment explanation
Indices: 13485051--13485103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13485041 CCGGTTCGAT
13485051 CTTAGACT-GGTAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
*
13485077 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13485103 C
1 C
13485104 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13485972 original size:26 final size:26
Alignment explanation
Indices: 13485943--13485995 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13485933 CTGATTCGAT
13485943 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13485969 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13485995 C
1 C
13485996 GTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13486184 original size:896 final size:891
Alignment explanation
Indices: 13484396--13487532 Score: 4387
Period size: 896 Copynumber: 3.5 Consensus size: 891
13484386 GAAGAAAAAT
* * * *
13484396 GCGGGCACTACGCTGACCAGAGAGACGGGATGCGTAAGTCGTGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
13484461 TTTAGGCACATCTTCATATTTCTACGTGCCAAAGCCATTTTTATGGCTTGTAAATTAATACAATG
66 TTTAGGCACATCTTCATATTTCTACATGCCAAAGCCATTTTTATGGCTTGTAAATTAATACAATG
* *
13484526 GTCCTTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
13484591 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
196 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
13484656 AGATATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
261 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
13484721 AGATTTTGTGGCCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
* * **
13484786 CCTGTAAAATCTCGAATGCTATTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * *
13484851 CCAATATAAGGGCCAAGTACCAGCACCCGTGGCACATCATGTGTGCACACCCCCCCTGGCCCCCC
456 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGTGCGCA-CCCCCC-GGCCCCCC
* * * ** *
13484916 GATCATCGGAACCCCAATGCCGCCAGTCAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGGC
517 GATCGTCGGAACCCCAATGCTGCCAGTCAGGTTCTCC-GTGAAGCTCCGGTGATGGTGCCCCGGT
* * * * *
13484981 GAAGAAAAATGCAGCACCAATACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTTGGTCCGGT
581 GAAGAAAAATGTAGCACCAACACATGCCCGAGCCCAGCATGTGCTGTC-AAACCCTTGGT-CGAT
* * *
13485046 TCGATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTC
644 TCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
* * * * *
13485111 AACCCACGAAACGGGTGTGTGGGTGCTAAGTCGGCCCGAGGGGCGGGATGCGCAAGCCGGGGATC
709 AACCCACGAAACGGGCGTGTGGGAGCTAAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC
* * *
13485176 GGCCGGGTCCCCCTTTGCATGCTGCCGATCCTACTGCCACAACCCTCAGTTCGGTCTGATCTTAG
774 GACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAGTTCGGTCTGATCTTAG
* *
13485241 ACTGGGAATGAACTCTGCATGCCTAAGCCAATCGACGAAAC--GAGCGGGCGA
839 ACTGGGAATGAACTCTGCATGCCTAAGCCAACCGACGAAACGAGAGCGGGCGG
* *
13485292 GCGGGCACTATGCCGACCAGAGAGACGAGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
13485357 TTTAGGCACATCTTCATATTTCTACGTGCCAAAGCCATTTTTATGGCTTGTAAATTAATACAATG
66 TTTAGGCACATCTTCATATTTCTACATGCCAAAGCCATTTTTATGGCTTGTAAATTAATACAATG
* *
13485422 GTCCTTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
13485487 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
196 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
*
13485552 AGATATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
261 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
13485617 AGATTTTGTGGCCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
13485682 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* *
13485747 CCAATCTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCGGCCCCTCGATC
456 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCGGCCCCCCGATC
*
13485812 GTCGGAACCCTAATGCTGCCAGTCAGGTTCTCCGGTGAAGCTCCGGTGATGGTGCCCCGGTGAAG
521 GTCGGAACCCCAATGCTGCCAGTCAGGTTCTCC-GTGAAGCTCCGGTGATGGTGCCCCGGTGAAG
*
13485877 AAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTTGGTCTGATTCGA
585 AAAAATGTAGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCA-AACCCTTGGTC-GATTCGA
*
13485942 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCGTAAGTCAACC
648 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * * * *
13486007 CATGAAACGGGCGTGTGGGAGCTCAGCCGGCCTGAGGGGCGAGATGCACAAGTCGGGGATCGACC
713 CACGAAACGGGCGTGTGGGAGCTAAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACC
* ** * *
13486072 GGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACTGTCGGTCCGGTCTGATCTTAGACTG
778 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAGTTCGGTCTGATCTTAGACTG
*
13486137 GGAATGAACTCTGCATGCCTAAGCCAACCGACGAAACGAGTGAGCGGGTGG
843 GGAATGAACTCTGCATGCCTAAGCCAACCGACGAAACGA--GAGCGGGCGG
* * * * *
13486188 GTGGGCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCCTGGATCGATAGGGTGGGAGGTGGG
1 GCGGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * * *
13486253 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGGTTGTGAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTACATGCCAAAGCCATTTTTATGGCTTGTAAATTAATACAATG
* * *
13486318 GTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * *
13486383 TAAA-TTTTT----TTC--G-------------------GAAGGTGTTTTGGCCCCAAACTTGAT
196 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
13486422 AGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAAGTCACCCAAAAACTCGAAGTGTACA
261 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
13486487 CGATTTTGTTACCATTTGAAAAAAGTGTCTCCATTTCAGACACTGTAATGGCTACTGGTAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
*
13486552 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* ** *
13486617 CCAATATAAGGGCCAAGTGCTGGCA-CCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCC
456 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCCCCCGG--CCCCCC
* ** ** * *
13486681 GATCGTTGGAACCCCAATGCCT-CTGGTCAGGTTCTCCGACAATGCTCCGGTGATGGTGCCCTGA
517 GATCGTCGGAACCCCAATG-CTGCCAGTCAGGTTCTCCGTGAA-GCTCCGGTGATGGTGCCCCGG
* * *
13486745 TGAAGAAAAATACGACACTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAAA-CCTC
580 TGAAGAAAAAT--G----TAGCACCAACACATGCCCGAGCCCAGCATGTGCTG-T-CAAACCCTT
* * * * * * *
13486809 GGTCCAGTTCGATATTAGAATGGGAGTGAACTTTGTATGCTTAGACCGGGAATGAACTCCGTATG
637 GGTCGA-TTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATG
* * * * *
13486874 CCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGGCCAGAGGGGCGGGATGCGCAAGT
701 CCTAAGTCAACCCACGAAACGGGCGTGTGGGAGCTAAGCCGGCCAGAGGGGCGGGATGCGCAAGT
* * * ** * * *
13486939 CGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAATCCTACCACCGCAACCCTCAGTTTGATCT
766 CGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAGTTCGGTCT
* * *** *
13487004 AATCTTACACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGA-A-CGGGCGG
831 GATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCCAACCGACGAAACGAGAGCGGGCGG
* * * **
13487063 GCGGGCACTACGCCGGCCAGAGAAACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
13487128 TTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAGACAATG
66 TTTAGGCACATCTTCATATTTCTACATGCCAAAGCCATTTTTATGGCTTGTAAATTAATACAATG
* *
13487193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTCGTTTTCTATTTTTCACGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * *
13487258 GAAACTTTTTGTGGTTCGGGATTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGCT
196 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
13487323 AGACGTGATGCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
261 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
** *
13487388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTACTACTGGCAGCAAA
326 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
* *
13487453 CCTGTAAAATCTCAAATGCACTTTAAGGGGGAGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
391 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
*
13487518 CCAATATAAAGGCCA
456 CCAATATAAGGGCCA
13487533 TGCTCTGGTG
Statistics
Matches: 2012, Mismatches: 182, Indels: 89
0.88 0.08 0.04
Matches are distributed among these distances:
869 18 0.01
870 227 0.11
871 10 0.00
872 3 0.00
873 65 0.03
874 2 0.00
875 187 0.09
876 6 0.00
878 1 0.00
879 244 0.12
880 6 0.00
881 1 0.00
882 1 0.00
889 1 0.00
891 4 0.00
892 334 0.17
893 6 0.00
894 7 0.00
895 5 0.00
896 667 0.33
901 217 0.11
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (891 bp):
GCGGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTACATGCCAAAGCCATTTTTATGGCTTGTAAATTAATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCGGCCCCCCGATC
GTCGGAACCCCAATGCTGCCAGTCAGGTTCTCCGTGAAGCTCCGGTGATGGTGCCCCGGTGAAGA
AAAATGTAGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCAAACCCTTGGTCGATTCGATCT
TAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
GAAACGGGCGTGTGGGAGCTAAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGG
TCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGA
ATGAACTCTGCATGCCTAAGCCAACCGACGAAACGAGAGCGGGCGG
Found at i:13489164 original size:26 final size:26
Alignment explanation
Indices: 13489135--13489187 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13489125 CTGGTCCGAT
13489135 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
13489161 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13489187 C
1 C
13489188 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13489485 original size:26 final size:26
Alignment explanation
Indices: 13489449--13489501 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13489439 CGGATCAAAT
13489449 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13489475 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13489501 C
1 C
13489502 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13490363 original size:26 final size:27
Alignment explanation
Indices: 13490318--13490371 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
13490308 CGATCTTGAT
*
13490318 CTTAGACTGGGGAATGAACTTCGTATG
1 CTTAGACTGGGGAATGAACTCCGTATG
13490345 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTGGGGAATGAACTCCGTATG
13490371 C
1 C
13490372 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGGAATGAACTCCGTATG
Found at i:13491440 original size:871 final size:879
Alignment explanation
Indices: 13489467--13492272 Score: 3104
Period size: 871 Copynumber: 3.2 Consensus size: 879
13489457 GGGAATGAAC
* * * * * *
13489467 TCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAATTCAACCCACGAAACGAGCGTACGGG
1 TCCGTGTGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
* * * * ** *
13489532 TGCTCAG-CTGCCAAGAGGGGTGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCATTTTGCGTGC
66 TGCTCAGCCGGCC-AGAGGGGCGGGATGCACAAGCCGGGGATC-GCCGGGTCCCCCTCT-CGTGC
* * * * * * ** * * *
13489596 TGCTGATCTTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
128 TACCGATCCTGCTGCAGCAACCCTCGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCATATGC
* * ** * * * *
13489661 CTAAGCCAACCGATGAAATGAGCGGGCGGGCGAGCGGCCGGGTACTAC-GCTGGCCAGAGAGACG
193 CTAAGCCAACCAACGAAATGAGATGGCGGG-GGGCGGGCGGGCACTACATC-GGCCAGAGAGACG
* * ** * * *
13489725 GGATGCACAAGCCGTGGATCGATAAGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTACTT
256 GGATGCGCAAGCCATGGATCGATGGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACAT
* *
13489790 ACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTC
321 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * ** *
13489855 ATGGCAAGACGACTCGTTTTATATTTTTCACAATTTTTGAAACTTTTTACGGTTC-GAGATTTTT
386 ATGGCAAGATGACTCGTTTTCTATTTCTCATGATTTTTGAAACTTTTTACGGGTCAG-GATTTTT
* * * * * *
13489919 AAAAATTTTTTCGGAAGGGGTTTTGGCCCTAAACATGGTAGACATGATCCTTGTATTTTTGTTGG
450 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTGTTGG
* * *
13489984 CATGCATAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
515 CATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * *
13490049 GTCCCCATTTCACGACAC-TTAATGGCTACTTGTTAGCAAAAACTGT-AAATCTCACAATGCTCT
580 GTCCCCATTCCA-GACACTTTAATGGCTACTAG-CAGC-AAACCTGTAAAATCTCA-AATGCTCT
* * * *
13490112 TTAAAGGGGTGGTGAGTTCTCGAGAG-TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCAC
641 TTAAGGGGGT-GTGAGTTCTCAAG-GTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGAAC
* *
13490176 CAGCACCCATGCGCACATCATGTGCGCACACCCCCGCGGCCCCC-CGATTCGTCGGAAACCCC-A
704 CAGCACCCAT-CACACATCATGTGCGCACACCCCC-CGGCCCCCTCGA-TCATC-GAAACCCCAA
* * **
13490239 TGTCG-C---C--G--GT-CA---G-G-T--T-CTTCGAC---G----AT----CA--AACACAT
765 TGCCGACAGTCAAGTTCTCCATGCGCGATAGTGCCCCGACGAAGAAAAATACGGCACCAACACAT
* * * *
13490274 GCCCGAGCCCAGCATGTCCT-TCGC-ACCCTCAGTCCGATCTTGATCTTAGACTGGGGAATGAA
830 GCCCCAGCCCAGCATGTGCTACCACAACCCTCAG--CG-TC-TG----T-GACT--GG-A-G-A
* * * *
13490336 CTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCC-CGAAATGAGCGTGCGG
1 -TCCGTGTGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGG
*** *** *
13490400 GTGCTCAGCCCGGCCAGAGTTAACGGGATAGTGGAAGCCAGGGATCCGCCGGGTCCCCCTCTCGT
65 GTGCTCAG-CCGGCCAGAG-GGGCGGGAT-GCACAAGCCGGGGAT-CGCCGGGTCCCCCTCTCG-
** ** *
13490465 TGCTACCGATCCTGCTATAGCAACCCTCGGTTTGGTCTGATCTTAGACTAGGAATGAACTCTATA
125 TGCTACCGATCCTGCTGCAGCAACCCTCGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCATA
* * * *
13490530 TGGCTAAGCCAACCAAGGAAATGAGCTGGCGGGGGGCGGGCGGGCACTCCATCGGCCAGAGAGAC
190 TGCCTAAGCCAACCAACGAAATGAGATGGCGGGGGGCGGGCGGGCACTACATCGGCCAGAGAGAC
* **
13490595 GGGATGTGCAAGCCATGGATCGATGGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTATG
255 GGGATGCGCAAGCCATGGATCGATGGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACA
* *
13490660 TGCCAATGCCATTTTTATGGCTTGTATATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTT
320 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
13490725 CATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAATTTTTTACGGTTCAGGATTTTT
385 CATGGCAAGATGACTCGTTTTCTATTTCTCATGATTTTTGAAACTTTTTACGGGTCAGGATTTTT
* * *
13490790 TAAAATTTTTTC-GAATGGAGTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTG
450 TAAAATTTTTTCAGAA-GGAGTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTGTTG
*
13490854 GCATGCATAAAAAAATTCAGCTAAAAACTC-AATGTGTACAAGATTTTGTGACCATTTGAAAAAA
514 GCATGCAAAAAAAAATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * *
13490918 GTGTCCCCATTCCAGGCACTTTAATGGCTATTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTT
578 GTGTCCCCATTCCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * ** *
13490983 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTGAAGTACCAGC
643 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGAACCAGC
* ** * * *
13491048 ACTCATCACACATCATGTGCGTGCACCCCCCGGCCCGCC-CGATCGTCGAAAGCCTAATGCC-AC
708 ACCCATCACACATCATGTGCGCACACCCCCCGGCCC-CCTCGATCATCGAAACCCCAATGCCGAC
13491111 AAGTCAAGTTCT-C-TG-GCGATAGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCCA
772 -AGTCAAGTTCTCCATGCGCGATAGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCCA
**** * *
13491173 GCCCAGCATGTGCTGGTGCAGCCCTC-G-GTCTG-GTCT-G-G-
836 GCCCAGCATGTGCTACCACAACCCTCAGCGTCTGTGACTGGAGA
*
13491211 T-C-TGAT-CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
1 TCCGTG-TGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGG
* * * *
13491273 GTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGATCGGATCCCCCTCTGCGTGT
65 GTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCG-CCGGGTCCCCCTCT-CGTGC
* * *
13491338 TGCCGATCCTGCTGCAGCAACCCTCGGTTTGGTCCAATCTTAGA-TAGGGAATGAACTCCGTTTG
128 TACCGATCCTGCTGCAGCAACCCTCGGTTTGGTCCAATCTTAGACTA-GGAATGAACTCCATATG
* * *
13491402 CCTAAGCCAACCGACGAAATGA-ATGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGTC
192 CCTAAGCCAACCAACGAAATGAGAT-GGCGGG-GGGCGGGCGGGCACTACATCGGCCAGAGAGAC
* * * * *
13491466 GGGATGCGCTAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCA
255 GGGATGCGCAAGCCATGGATCGATGGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACA
*
13491531 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTT
320 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
*
13491596 CATGGCAAGATGACTCGTTTTCTATTTCTCATGATTTTTGAAACTTTTTACGGGTCGGGATTTTT
385 CATGGCAAGATGACTCGTTTTCTATTTCTCATGATTTTTGAAACTTTTTACGGGTCAGGATTTTT
13491661 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTGTTGG
450 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTGTTGG
*
13491726 CATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACCAGATTTTGTGACCATTTGAAAAAAGT
515 CATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
13491791 GTCCCTATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
580 GTCCCCATTCCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
13491856 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGGTAGGGGGCAAATATAAGGGCCAAGAACCAGCAC
645 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGAACCAGCAC
* * *
13491921 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCATCGAAACCCCAATGCCGTCGGT
710 CCATCACACATCATGTGCGCACACCCCCCGGCCCCCTCGATCATCGAAACCCCAATGCCGACAGT
* * **
13491986 CAGGTTCTCCGACAATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGC
775 CAAGTTCT-C--C-ATG---C-GCGATAGTGCCCCGACGAAGAAAAATACGGCACCAACACATGC
** *
13492051 CCGGGCCCAGCGTGTGCTACCACAACCCTCAGTCCAGTCTGATTTAGACTGGAATGAA
832 CCCAGCCCAGCATGTGCTACCACAACCCTCAG--C-GTCTG---T-GACTGG-A-G-A
13492109 TTCCGTGTGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGG
1 -TCCGTGTGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGG
* * * *
13492174 GTGCTCAGCCGACCAAAAGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTACATGC
65 GTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATC-GCCGGGTCCCCCTCT-CGTGC
*
13492239 TACCGATCCTGCTGCCA-CAACCCTCGGTCTGGTC
128 TACCGATCCTGCTG-CAGCAACCCTCGGTTTGGTC
13492273 TAATTTTGTG
Statistics
Matches: 1663, Mismatches: 183, Indels: 149
0.83 0.09 0.07
Matches are distributed among these distances:
865 6 0.00
866 16 0.01
867 27 0.02
868 57 0.03
869 51 0.03
870 173 0.10
871 861 0.52
872 164 0.10
873 26 0.02
874 3 0.00
875 2 0.00
876 1 0.00
877 4 0.00
879 1 0.00
880 6 0.00
882 62 0.04
883 5 0.00
887 7 0.00
889 2 0.00
890 2 0.00
891 3 0.00
892 3 0.00
893 26 0.02
894 3 0.00
895 5 0.00
896 1 0.00
899 1 0.00
900 2 0.00
901 140 0.08
902 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (879 bp):
TCCGTGTGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
TGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGCCGGGTCCCCCTCTCGTGCTAC
CGATCCTGCTGCAGCAACCCTCGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTA
AGCCAACCAACGAAATGAGATGGCGGGGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATG
CGCAAGCCATGGATCGATGGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGATGACTCGTTTTCTATTTCTCATGATTTTTGAAACTTTTTACGGGTCAGGATTTTTTAAAAT
TTTTTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTCCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGAACCAGCACCCATCA
CACATCATGTGCGCACACCCCCCGGCCCCCTCGATCATCGAAACCCCAATGCCGACAGTCAAGTT
CTCCATGCGCGATAGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCCAGCCCAGCATG
TGCTACCACAACCCTCAGCGTCTGTGACTGGAGA
Found at i:13492640 original size:26 final size:26
Alignment explanation
Indices: 13492589--13492641 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13492579 CCGGTCCAAT
***
13492589 CTTACACTGGGAATGAACTTTGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
13492615 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
13492641 C
1 C
13492642 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:13494381 original size:26 final size:26
Alignment explanation
Indices: 13494352--13494404 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13494342 CCGATCTGAT
*
13494352 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13494378 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13494404 C
1 C
13494405 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13495447 original size:895 final size:894
Alignment explanation
Indices: 13493488--13500099 Score: 8671
Period size: 895 Copynumber: 7.5 Consensus size: 894
13493478 TCGATCTTGC
*
13493488 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * * * * *
13493553 AGAGGGGTGGGACGTACAAGCCGGGGATCGGTCGGGTCACCCTGTGCGTGCTGCCGATCCTGCTA
66 AGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTC-CCCTCTGCATGCTGCCGATCCTGCTG
* * * * *
13493618 CCGCAACCCTCAGTCTGGTCTAAACTTAGACTGGGAATGAACTCCGTATGCCTAGGCCAACCGAC
130 CCGCAACCCTCACTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
13493683 GAAATGAGCGGGCGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGGAAGCCGTGGATCGAT
195 GAAACGAGCGGGCGGGCAGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
** ***
13493748 AGGGTGGTAGGTGGGTTTACACACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTG
260 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* * * * *
13493813 TAAATTCGTACAATGGCCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGATGACTCGTTTTCTA
325 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
* * * *
13493878 TTTTTCATGA-TTTCTGAAACTTTTTACGGTTCGGGATTTGTGAAAATTTTTTCGGAAGGAGTTT
390 TTTTTCACGATTTTC-GAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * *
13493942 TGCCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCGTGCACAAAAATATTCAGCTAA
454 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
*
13494007 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAAT
519 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
13494072 CGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
584 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
13494137 GATGAGGGATA-GGGGCTCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCAC
649 GATGAGGGATAGGGGGC-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
13494201 ACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTTCG
713 ACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
** * * *
13494266 ACGATGGTGCCCCGACGAAGAAAAATGTAGCACCAACAGATGCTCGAGCCCTGCATGTGCTGCCG
778 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCG
* **
13494331 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
843 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* ** * *
13494383 ACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGATTGTACGGGTGCTCAACCGGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * * * *
13494448 AAAGGGGCGGGATGCGCAAGCCGGGGATCAGTCGGGTTCCCCTCTACATGCTGCTGATCCTGCTG
66 AGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGG-TCCCCTCTGCATGCTGCCGATCCTGCTG
* * ** * * * *
13494513 TCGTAACCCTCGGTCCAGT-TCGATCTAAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGA
130 CCGCAACCCTCACTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
13494577 CGAAACGAGCGAGCGGGCAGGCATTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGA
194 CGAAACGAGCGGGCGGGCAGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
13494642 TAGGGTGGTAGGTGGGTTTAGGCACATATTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTT
259 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * * *
13494707 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCACGATGACTAATTTTCT
324 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
* * **
13494772 ATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAACAGTTT
389 ATTTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
13494837 TGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTTTTGGCATTCACAAAAAAATTCAGCTAA
454 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
13494902 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
519 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
13494967 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
584 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
13495032 GATGAGGGATAGGGGGCCAATATAAGGGCCAA-TAACCAGCACCCATCGCACATCATGTGCGCAC
649 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-ACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
13495096 ACCACCCCGGCCCTCTCGATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGATGATGCTCC
713 ACC-CCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
* *
13495161 GACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGTATGTGCTGCC
777 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCC
*
13495226 GTAACCCTCGGTCCGATCCGATC-TAGGACTGGGAATGAACTCCATATGCTTAG
842 GCAACCCTCGGTCCGATCCGATCTTA-GACTGGGAATGAACTCCATATGCTTAG
* * * * * *
13495279 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGATGCTCAGTCGGCT
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * * *
13495344 AGAGGGGCGGGATGCACAAGCCGAGGATCGGCCGGGTCCCCTTCTGCATGCTACCGATCTTGCTG
66 AGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCC-TCTGCATGCTGCCGATCCTGCTG
* *
13495409 CCACAACCCTCACT-CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
130 CCGCAACCCTCACTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * * ** * *
13495473 GGAACAAGCGGACGGGC-GG--GTAGA-CGGGC--A-CTAC--G-T-CG--A--C-TAGA--GAG
195 GAAACGAGCGGGCGGGCAGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
13495520 ACGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
260 A-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * *
13495585 GTAAATTCATACAATGGTCCCTTAACCCTTCATGTGAAGTTTCATGGCAACACGACTCATTTTCT
324 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
* *
13495650 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTCGGAAGGAGTTT
389 ATTTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
13495714 TGGCCCCAAACTAGGTAGACATGATCCTTTTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAA
454 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* * * *
13495779 AAACTCGAAGTGTACAAGATTTTGAGCCCGTTTGAAAAAAGTGTCCCCATTTCGGACACTTTAAT
519 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
13495844 GGCTACTGGCAGCAAACTTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTT
584 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
13495909 GATGAGGGATAGAGGTCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACA
649 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * **
13495974 CCCCCCGGCCCCCT-GATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTGCGGTGATGCTCCGA
714 CCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
* * * * *
13496038 CGATGGTGCCCTGGCGAAGAAAAATGCGGCACTAACACATGCCTGAGCCCAACATGTGCTGCCAG
779 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCC-G
* *
13496103 -AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGTTTAG
843 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * **
13496154 ACTGGGAATGAACTCCGTATGCCTCAA-TCAACTCACGAAATGAGCGTGCGGGTGCTCAGCTAGC
1 ACTGGGAATGAACTCCGTATGCCT-AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGC
* * * * ** * *
13496218 CAGAGGGGCGAGATGCATAAGTCGGGGATCGATCGGGTCCTCCTCTGTGTGCTGCCAATCCTACT
65 CAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCC-CCTCTGCATGCTGCCGATCCTGCT
* ** * *
13496283 GCCGCAACCCTCAGTCTAGTCTGATCTTACACTGAGAATGAACTCCGTATGCCTAAGCCAACCGA
129 GCCGCAACCCTCACTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
** *
13496348 CGAAACGAGTGGGCGGGCGGGCAGGTGGGCACTATGTCGGCCAGAGACACGGGATGCGCAAGCCG
194 CGAAACGA----GCGGGCGGGCA----GGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCG
*
13496413 TGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCCATTTT
251 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
13496478 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
316 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * *
13496543 CGTTTTCTATTTTTCACAATTTTTGAATCTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCAGA
381 CATTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGA
* * * * *
13496608 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCATTGCATTTTTCTTGGCATGCATAAAAAAAT
446 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * *
13496673 TCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAAAC
511 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
13496738 ACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
576 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
13496803 TGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCATGTACTAGCACCCATCGCACATCATG
641 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* **
13496868 TGCGCACACCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGGTG
706 TGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACG
* * *
13496931 ATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAACATG
770 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* * * *
13496996 TGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTCAG
835 TGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * * *
13497056 ACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACAAGCGTACGGTTGCTCAGCTGGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * * * *
13497121 AGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTTTGCATGCTGCCAATCCTGCTG
66 AGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGT-CCCCTCTGCATGCTGCCGATCCTGCTG
*
13497186 CCGCAACCCTCACTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGAC
130 CCGCAACCCTCACTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * * *
13497251 GGAACGA----GCGGGCAGG-----T---GGGC-G-G-G-TGGGCACTACGC-TGGC-TAGA--G
195 GAAACGAGCGGGCGGGCAGGCACTATACCGGCCAGAGAGACGGG-A-TGCGCAAGCCGTGGATCG
* *
13497296 AGACGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
258 ATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * *
13497361 TTGTAAATTCATACAATGGTCCCTCAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
322 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
* * * * *
13497426 CTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTTGGATTTTTTTAAATTTTTTCGGAAGGAGT
387 CTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * *
13497491 TTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTTTTGGCAAGCACAAAAAAATTCAGAT
452 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* *
13497556 AAAAACTTGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
517 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
13497621 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
582 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
13497686 TTGATGACGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATTATGTGCGCA
647 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
** * * * *
13497751 CACCCCCCGGCCCCCTCGATCACCGGAACCCTAATGCCGTCGGTCAGGTTCTCAGGCGATGCTAC
712 CACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
* *
13497816 GACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCAAGCCTC-GCATGTGCTGC
777 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC-CAGCATGTGCTGC
13497880 CGCAACCCTCGGTCCGATCCGATCTTAGACT--G---G----------G---A-
841 CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * *
13497915 A-T--GAAT----TCCGTATGCCTAAGTGAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCT
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * *
13497973 AGAGGAGCGGGATGCGCAAG-CGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTACTG
66 AGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGT-CCCCTCTGCATGCTGCCGATCCTGCTG
* *
13498037 CTGCAACCCTCGCTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
130 CCGCAACCCTCACTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * * **
13498102 GGAACGAGCGGACGGGC-GG------A-C-G---G-G-CAC----TACGC---CTGTTAGAAAGA
195 GAAACGAGCGGGCGGGCAGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCG-TGGATCGA
*
13498146 T-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCTT
259 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * *
13498210 GTAAATTCATACAATGATCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACCACTCATTTTCT
324 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
* * * * *
13498275 ATTTTTCATGATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
389 ATTTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * *
13498340 TGGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCAAGCA-TAAAAAATTCAGCTA
454 T-GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* *
13498404 AAAACTCGAAGTGTACAAGATTTTGAGCCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
518 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
13498469 TGGCTACT-GCTAGCAAACCTGTAGAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGAGGT
583 TGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
13498533 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCTTCACACATCATGTGTGCA
647 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * *
13498598 CACCCCCCCGGCCTCCC-CGATCGTCAGAACCCCAATTCCGTCGGTCAGGTTCTCCGACGATTCT
712 CA-CCCCCCGGCC-CCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
** * *
13498662 CCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAACACATGCTCGAGCCCAACATGTGCTG
775 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
* *
13498727 CCGCAACCCTCGGTCC-AGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAG
840 CCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
** * *
13498782 ACTGGGAATGAACTTTGTATGCCTCAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
** * * * * *
13498847 AGAGGGGTAGGATGCACAAGCTGGGGATCGGACGGGTCCCCCTCTGCGTGCTG-TGAATCTTGCT
66 AGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGT-CCCCTCTGCATGCTGCCG-ATCCTGCT
* * * * * *
13498911 GCCGTAGCCCTCACTCCGGTCTAATC-TACGACT-GGAATGAACTCCGTAAGCCTAAGTCGACCG
129 GCCGCAACCCTCACTCCGGTCTGATCTTA-GACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
13498974 ACGAAACGAGTGGGCGGGCGGGCACTATGCCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCG
193 ACGAAACGAGCGGGCGGGCAGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * *
13499039 ATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCAGCGTGCCAATGCCATTTTTATGGCC
258 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
*
13499104 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
323 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
** *
13499169 TATTTTTCACGATTTTCGAAACTTTTTACGAG-TCAGGATTGTTTAAAATTTTTTCGGAAGGAGT
388 TATTTTTCACGATTTTCGAAACTTTTTACG-GTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * **
13499233 TTTGGCCCCAAACTTGGTAGACGTTATCCTAT-TATTTTTTTTGGCATGCACAAAAAAAATTTTG
452 TTTGGCCCCAAACTTGGTAGACATGATCCT-TGTATTTTTTTTGGCATGCAC-AAAAAAATTCAG
* *
13499297 CTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-GAACACA
515 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACT
* *
13499361 TTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
579 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
13499426 GGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCACACATCATGTGC
644 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
13499491 GCACACCCCTCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCTGACGATG
709 GCACACCCC-CCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* * * * *
13499555 CTCCGACGATAGTGCCCCAACGAATAAAAATGCAGCACCAACACATGCCTGAGCCCAGCATGTGC
773 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGC
* * * * *
13499620 TACCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
838 TGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * * * *
13499677 ATTGGGAATCAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGGGGGTGCTCAGTCGACC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * * * * * ** *
13499742 AGCGGGGTGGGATGCACAAGTCAGGGATCGGTCGGGTCCCCCTCCGCGTGCTATCGATCCTACTG
66 AGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGT-CCCCTCTGCATGCTGCCGATCCTGCTG
* ** ** * *
13499807 CTGCAACCCTCGGTTTGATCTGATCTTACG-CTGGGAATGAACTTCGTATGCCTAAGCCAACCGA
130 CCGCAACCCTCACTCCGGTCTGATCTTA-GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * *
13499871 CAAAATGAGCGAGCGGGCGGGCGGGCGGGCACCACACCGGCCAAAAAGACAGGATGCGCAAGCCG
194 C-GAA--A-CGA----GCGGGCGGGCAGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
13499936 TGGATCGAT-GGGTAGGTAGGTGGGTTTTGGCACATCTTCATATTTCTCCATGCCAACGCCATTT
251 TGGATCGATAGGGT-GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
13500000 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
315 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
13500065 TCATTTTCTATTTTTCACGATTTTCAAAACCTTTT
380 TCATTTTCTATTTTTCACGATTTTCGAAACTTTTT
13500100 GTTGTTCGGA
Statistics
Matches: 5051, Mismatches: 524, Indels: 275
0.86 0.09 0.05
Matches are distributed among these distances:
846 2 0.00
847 388 0.08
848 183 0.04
849 5 0.00
851 109 0.02
852 64 0.01
853 1 0.00
854 3 0.00
855 5 0.00
856 4 0.00
858 1 0.00
859 1 0.00
860 1 0.00
863 2 0.00
866 1 0.00
867 1 0.00
868 1 0.00
870 4 0.00
873 1 0.00
874 107 0.02
875 327 0.06
876 74 0.01
877 696 0.14
878 292 0.06
879 8 0.00
880 15 0.00
881 1 0.00
882 5 0.00
883 1 0.00
884 2 0.00
885 4 0.00
886 2 0.00
887 3 0.00
888 8 0.00
889 1 0.00
890 3 0.00
891 6 0.00
892 7 0.00
893 1 0.00
894 59 0.01
895 1159 0.23
896 520 0.10
897 5 0.00
899 2 0.00
900 6 0.00
901 165 0.03
902 599 0.12
903 6 0.00
904 190 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (894 bp):
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
AGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCTCTGCATGCTGCCGATCCTGCTGC
CGCAACCCTCACTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGGCGGGCAGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
TTTTCACGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACG
ATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
Found at i:13496160 original size:26 final size:26
Alignment explanation
Indices: 13496124--13496174 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13496114 CGGTCCGATC
13496124 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
*
13496150 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
13496175 CCTCAATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:13497064 original size:26 final size:26
Alignment explanation
Indices: 13497028--13497077 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13497018 GTTCGATCTT
13497028 AGACTGGGAATGAACTCCATATGCTC
1 AGACTGGGAATGAACTCCATATGCTC
*
13497054 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCATATGC
13497078 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTC
Found at i:13499675 original size:26 final size:26
Alignment explanation
Indices: 13499646--13499698 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13499636 CCGGTCCGAT
*
13499646 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
13499672 CTTAGATTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
13499698 C
1 C
13499699 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:13500796 original size:26 final size:26
Alignment explanation
Indices: 13500760--13500809 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13500750 GTCCGATCTG
13500760 AGACTGGGAATGAACTCCATATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
*
13500786 AGACTGGGAATGAACTTCATATGC
1 AGACTGGGAATGAACTCCATATGC
13500810 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTT
Found at i:13501688 original size:26 final size:24
Alignment explanation
Indices: 13501651--13501700 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 24
13501641 CCTCAGTTTG
13501651 ATCTGATCTTAGACTGGGAATGAA
1 ATCTGATCTTAGACTGGGAATGAA
13501675 ATCTGTATGCTTAGACTGGGAATGAA
1 ATCTG-AT-CTTAGACTGGGAATGAA
13501701 TTCCATATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 5 0.21
25 2 0.08
26 17 0.71
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (24 bp):
ATCTGATCTTAGACTGGGAATGAA
Found at i:13501709 original size:26 final size:26
Alignment explanation
Indices: 13501658--13501710 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13501648 TTGATCTGAT
**
13501658 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCATATG
*
13501684 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
13501710 C
1 C
13501711 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:13502595 original size:26 final size:26
Alignment explanation
Indices: 13502556--13502608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13502546 CCAGTTGGAT
*
13502556 CTTAGACTGAGAATGAACTCCTTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
13502582 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13502608 C
1 C
13502609 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13503490 original size:26 final size:26
Alignment explanation
Indices: 13503461--13503513 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13503451 CCGATTCGAT
*
13503461 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
13503487 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13503513 C
1 C
13503514 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13504419 original size:26 final size:26
Alignment explanation
Indices: 13504367--13504419 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13504357 CCGATCTGAT
*
13504367 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
13504393 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
13504419 C
1 C
13504420 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:13504967 original size:906 final size:901
Alignment explanation
Indices: 13500110--13505295 Score: 6797
Period size: 906 Copynumber: 5.8 Consensus size: 901
13500100 GTTGTTCGGA
*
13500110 CGGGCGGGCACTGCGCTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTACGC-GGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
*
13500175 GGGTTTAGGCACATCTTCATATTTC-AGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
65 GGGTTTAGGCACATCTTCATATTTCTA-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
13500239 AATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
129 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
**
13500304 TTTTGAAACTTTTTGTGAG-TCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
194 TTTTGAAACTTTTTACG-GTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
** * ** *
13500368 TTCATAGACGTGATCCTTGTAATTTTGTTGGCACACATAAAAAAATTCAGCTAAAAACTCGAAGT
258 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
13500433 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
323 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
13500498 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
388 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
13500563 GGGGGCGAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCTCCGGCC
453 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGG--
* * * *
13500628 CCCCCGATCGCCGAAACTCTAATGCCGTCGGTCAGG-T-T----C--T-CT--GGCGATGGTGCC
515 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* * *
13500682 CCGACAAAGAAAAATGTGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
580 CCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * * * *
13500747 CTGGTCCGATCTGAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCATATGCCT
645 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
13500812 AAGTCAACCCACGAAACGATCGTGCGGGTGATCAACCGACTAGAGGGGCAGGATGTACAAGCTGG
710 AAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG--CAAGCTGG
* * * * ** *
13500877 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCATAACCCTCACTCTGGTCTGAT
773 GGATCGGTCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGAT
* * * ** * * * * * *
13500942 CTAAGACTGGGAATGAACT-TCGTAAGCCTAAGCTAACTAACAAAACGAAC-GG-GCCGA-TGGA
838 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGCGAGCGGG
* * * *
13501003 CAGGCGAGCACTACGCTGGCCAGAG-GTACAGGATGCACAAGCCATGGATCGATAGGGTGGTAGG
1 CGGGCGGGCACTACGC-GGCCAGAGAG-ACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
* ****
13501067 TGGGTTTAGGTACATCTTCATATTTCCGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
64 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
13501132 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
129 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
* * * **
13501197 TTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGTCGTAAAC
194 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAAC
* *
13501261 TT-ATAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
258 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
13501325 GTACAAGATTTTGTGACCATTTGAAACAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
323 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
13501390 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
388 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
13501455 GGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGTGCACACCACCC-GCCC
453 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * *
13501519 TTCCGATCGTCGGAACCCTAATGCAGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCC
518 --CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
* * * * *
13501584 CGATGAAGAAAAATGGGGCACCAGCACATG-CTCGAGCCCAGCATGTGCTGTCACAACCCTCAGT
581 CGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGT
** * * * *
13501648 TTGATCTGATCTTAGACTGGGAATGAAATCTGTATGCTTAGACTGGGAATGAATTCCATATGCCT
645 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
** * * *
13501713 AAGTCAACCCACGAAAC-AAGCGTATGGGTGCTCAGCTGGCCAGAGGGGCGGGATGCACAAGCCG
710 AAGTCAACCCACGAAACGAA-CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG--CAAGCTG
* * * * * * *
13501777 GGGATCAGTC-GGTCCCCTTCTACGTGCTGCCAATCTTGATGCCGCAACCCTCAGTCCGATCTGA
772 GGGATCGGTCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGA
** * *
13501841 TTCTTAGACCAGG-ATGAACTCCTGTATGCCAATAGCCAACCGATCGGAAT--G-A-GCGG-GA-
837 -TCTTAGACTGGGAATGAACT-CTGTATGCCTA-AGCCAACCGA-CGAAATGAGCAGGCGGCGAG
13501899 CGGG
898 CGGG
13501903 C-GGC---CACTGACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
1 CGGGCGGGCACT-ACG-CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
* * *
13501964 TGCGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTAC
64 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
13502029 AATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCATGAT
129 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
* **
13502094 TTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCTGCAAAC
194 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAAC
* * * *
13502158 TTGTTAGACGTGATCCTTGTATTTCTGTTGGCATGCAAAAAAAAATTCAGGTAAAAACTCGAAGT
258 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
13502223 GTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACAATTTAATGGCTACTGGCA
323 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
13502288 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGATA
388 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
13502353 GGGAGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGC
453 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGG-
* * *
13502418 CCCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
515 -CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * *
13502483 CCCGACGAAGAAAAATGCTG-ACCAGCATATGCCCGAGCCCA--ATGTGCTGCCGCAACCCTCGG
579 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
13502545 TCC-AGT-TGGATCTTAGACTGAGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATG
644 TCCGA-TCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
13502608 CCTAAGTTAACCCACGAAACGAGCGTACGGGCGCTTAGCCGGCCAGAGGGG-GGAGATGCGCAAT
707 CCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG-GAT--GCAAG
** * *** * * * * *
13502672 CCAGGGATCGGTCGGGGCCCC-TCTACGTGCTTTTGATCCTGCTACCGCAACCCTTGGTCTGGCC
769 CTGGGGATCGGTCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTC
** ** * * *
13502736 CAATCTTAGACAAGGAATGAACTCTGTATGCCTAACCCAACCGACGAAATGAGCGGGCGGGCGGG
834 TGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCAGGC-GGC-GA
13502801 GCGGG
897 GCGGG
** * * ** *
13502806 CAAGCGGGCACTACGCCGACCAAAGAGACGAAATGCGCAAGTCATGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
* * ** * *
13502871 GGGTTTAGGCGCATCTTCATATTTCTGTGTGTGAATGCCATTTTTATGGATTGTAAATTCATATA
65 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
13502936 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTACTTGTCACGATT
130 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATT
** * *
13503001 TTCAAAACTTTTTACGGTTTGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTTGG-CCCAAACT
195 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAG-TTTTGGCCCCAAACT
* *
13503065 TGGTAGACGTGATCCATGCATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTG
259 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
13503129 TACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
324 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * **
13503194 CAAACCTATAAAATTTCAAATGCTCTTTAAGGGGGTCTGAGTTCTTAAGGTTTGATGAGGGATAG
389 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
13503259 GGGGCCAATATAAGGGCCAAGCACTAACACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
454 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * **
13503324 TCGATCGTCGGAACCCCAATGCCGTCGGTCACGTTCTCCGGTGATGCTCCGGCGATGGTTTCCCG
519 -CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
* * * * * * * **
13503389 GCAAAGAAAAATGTGGCACCAGTACTTGCCTGATCCCAGCATGTGCTGTCGCAACCCTTAGTCCG
583 ACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* *
13503454 AT-TCGATCTTAGATTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
648 ATCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
13503518 GTCAACGCACGAAAC-AAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCTGGG
712 GTCAACCCACGAAACGAA-CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT--GCAAGCTGGG
** * * * *
13503582 GATCGGTCGGGTCCCCCTT-TGTGTACTGTCGAGCCTGCTACCACAACCCTCGGTCCGGTCTGAT
774 GATCGGTCGGGT-CCCCTTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGAT
* * * * * * * *
13503646 CTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACCGATGAAACGAGCGGGCAGGGGGGTGGG
838 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCAGGC-GGCGAGCGGG
* * * * *
13503711 CGGGTGGGCACTACGCCGGCCAGA-AGACGGGATGCGTAAGCCGTGGATCGATAAGGTGGTGGGT
1 CGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
* * *
13503775 GGGTTTAGGCACATCTTCATATTTCTACGTGCGAATGCCAATTTTATGGCTTGTAAATTCATACA
65 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
13503840 AAGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
130 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATT
* * **
13503905 TTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT-GAAAGGACATTTGGCCCCAAACTT
195 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* *
13503969 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAACTCGAAGTGT
260 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
13504034 ACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
325 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
13504099 AAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGGTCTCGAGGTTTAATGAGGGATAGG
390 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
13504164 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAGACCCCCCTCGGCCC
455 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCC
* * * *
13504229 CCGATCGTCGGAACCCCAATGGCCGCCAGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCC
518 CCGATCGTCGGAACCCCAAT-GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
* * * * *
13504294 GACGAAGAAAATTACGGCACCAGCACATGCCTGAGCCCAGGATGTGCTACCCCAACCCTCGGTCC
582 GACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* *
13504359 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGCATGCCTAA
647 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
13504424 GTCAACCCACGAAACGAACGTGCGGGCAG-TCAGCCAGCCAGAGGGGTGGGATGCAAGCTGGGGA
712 GTCAACCCACGAAACGAACGTGCGGGC-GCTCAGCCGGCCAGAGGGGCGGGATGCAAGCTGGGGA
** * *
13504488 TCGACCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGATCGGATCTT
776 TCGGTCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTT
* * *
13504553 A-CCTTGGGAATGAACTCTGTATGCCTAAGCCAATCGACAAAATGAGCAGGCAGGCGAGCGGG
841 AGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCAGGC-GGCGAGCGGG
* *
13504615 CGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
* * *
13504680 GGGTTTCGGTACATCTTCATATTTCTATGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACA
65 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* **
13504745 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGCTTTCTATTTTTCACGATT
130 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATT
* * *** * * * **
13504810 TTTAAAACTTTTTATGGTTCAAAAATTTTTAAATTTTTTTCGGAAGGACATTTGGCCCCAAACTT
195 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* * * *
13504875 GGTAGACGTGATCCTCGTATTTTTTTTGGCATGCACAAAAAGATTCGGCTAAAAACTCGAAGTGT
260 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
13504940 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
325 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
13505005 AAACTTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTTTCGAGGTCTGATGAGGGATAGG
390 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
13505070 AGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCACACACCCCCCGGCCCCC
455 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * *
13505135 GATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCTCGGC
520 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
* * * * * * * *
13505200 GAAGAAAAATGCAGCACCAGCACATGCCCGAG-CCAGCATCTGCTGCCGCAATCATTGGTTCGGT
585 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
*
13505264 CCGATCTTAGACTGGGAATGAACTCCGTATGC
650 CTGATCTTAGACTGGGAATGAACTCCGTATGC
13505296 CTAAGCCAAT
Statistics
Matches: 3774, Mismatches: 440, Indels: 149
0.87 0.10 0.03
Matches are distributed among these distances:
888 3 0.00
890 30 0.01
891 3 0.00
892 240 0.06
893 238 0.06
895 5 0.00
896 14 0.00
897 254 0.07
898 402 0.11
899 14 0.00
900 84 0.02
901 276 0.07
902 137 0.04
903 158 0.04
904 539 0.14
905 581 0.15
906 780 0.21
907 16 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CGGGCGGGCACTACGCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCG
ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG
AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCAAGCTGGGGATCGGT
CGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACT
GGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGCGAGCGGG
Found at i:13505578 original size:14 final size:14
Alignment explanation
Indices: 13505561--13505588 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
13505551 AAATTTTTTC
13505561 GGAAGGAGTTTTAG
1 GGAAGGAGTTTTAG
13505575 GGAAGGAGTTTTAG
1 GGAAGGAGTTTTAG
13505589 CCCCAAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.43, T:0.29
Consensus pattern (14 bp):
GGAAGGAGTTTTAG
Found at i:13506032 original size:26 final size:26
Alignment explanation
Indices: 13505996--13506048 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13505986 CTGGTCGAAT
13505996 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13506022 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13506048 C
1 C
13506049 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13507637 original size:26 final size:26
Alignment explanation
Indices: 13507608--13507657 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13507598 ATCCGATCTT
*
13507608 AGACAGGGAATGAACTCCGTATGCTC
1 AGACAGGCAATGAACTCCGTATGCTC
*
13507634 AGACTGGCAATGAACTCCGTATGC
1 AGACAGGCAATGAACTCCGTATGC
13507658 ATAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (26 bp):
AGACAGGCAATGAACTCCGTATGCTC
Found at i:13509334 original size:877 final size:874
Alignment explanation
Indices: 13506945--13509527 Score: 3464
Period size: 877 Copynumber: 2.9 Consensus size: 874
13506935 AACGGAACGA
* * ** *
13506945 GTGGGCGGGCGGTCACTATGTCGGCCAGAGAGACGGGATGCGCAATTCGTGGATCGGTAGGGTGG
1 GTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
13507010 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTC
*
13507075 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCA
131 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
13507140 AGA-TTTTGAAGCTTTTTACGGTTC-AGGATTTGTTAAAATTTTTTCGAAAAGAGTTTTGGCCCC
196 TGATTTTTGAA-ATTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCC
* *
13507203 AAACTTGGTAGACGTGATCCTTGTATTTATGTTGGCATGCACAAAATAATTCAGCTAAAAACTTG
259 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTG
* * * *
13507268 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATCTGAGACACTTTAATGGCTACT
324 AACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATT
* **
13507333 GGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTACGAGTTCTCGAGGTTTGATGAGG
389 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
** * * *
13507398 GATAGGGGGCCAATATAAGTTCCAAGTACCAGCACCCATCGCGCTTCATGTGCGCACACCCCCCA
454 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * **
13507463 ACCCCCCCGATCGCCGGAACCCCTATGCCGCCAGTCAGGTTCTCTGGCG-TGCTCCGGTGATGGT
519 GCCCCCCCGATCGCCGGAA-CCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* * * * *
13507527 GCCCCGACGAACAAAAATGCGGAACCAGCACATGGCC-AAGCCCAGCATGTG-TGACCGCAACCC
583 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAA-CCCAGCATGTGCTG-CCACAACCC
13507590 TCGGTCCGATCCGATCTTAGACAGGGAATGAACTCCGTATGCTCAGACTGGCAATGAACTCCGTA
646 TCGGTCCGATCCGATC-T----------T--A----G-A--CT--G---GG-AATGAACTCCGTA
* * * *
13507655 TGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATCCACAA
685 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAA
* * ** * * ** ** *
13507720 GCCGAGGATCGACCGGGGCCCCCTCTGCGTGCTGCCAATCCTGTTGCTACAACCCTCAGTTTGGT
750 GTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGAT
* * * ** *
13507785 CTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCATCCGATTAAACGAGCGGGGG
815 CCGATCTTAGACGGAGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGCGG
* * * * * * *
13507845 GACGGGCGGGCGGGCTCTACGCCGGCCAGAGAGATGGGATGCGCAAGCCATGGACCGATA-AGTG
1 G-TGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
13507909 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA-TTTTTTGGCTTGTAAAGT
65 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATT
* *
13507973 AATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTC
130 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
13508038 ATGATTTTTGAAACTTTTTGCGGTTCGGGA-TTTTTAAAATTTTTTTGGAATGAGTTTTGGCCCC
195 ATGATTTTTGAAA-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCC
* *
13508102 AAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCT
259 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT-T
* *
13508167 -AACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGCCTAT
323 GAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAT
*
13508231 TGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
388 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
13508296 GGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT
453 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-
* * *
13508360 CGGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATG
517 CGGCCCCCCCGATCGCCGGAACCC-AATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATG
* ** * *
13508425 GTACCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAACGAAGCATGTGCTGCCATAACCA
581 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCCACAACCC
* *
13508490 TCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAC
646 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
*
13508555 GTACGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCT
711 GTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCT
*
13508620 GCGTGCTGCCAATCCTAG-TGCCGCAACCCTCAGTCCGATCCGATCTTAGACGGGGAATGAACTC
776 GCGTGCTGCCAATCCT-GCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACGGAGAATGAACTC
* *
13508684 CGTATGCCTAAGCCAACTGACAAAACGAGTTGGCGG
840 CGTATGCCTAAGCCAACCGACAAAACGAG-CGGCGG
* * * *
13508720 GTGGGCGGGCGGGCAATACGTTGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGA
1 GTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
13508785 TAGGTGGGTTTACGCACATTTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTC
* *
13508850 ATACAATGGTCCCATAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
131 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
13508915 TGATTTTTGAAATTGTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAATGAGTTTT-GCTCCC
196 TGATTTTTGAAATT-TTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGC-CCC
*
13508979 AAACTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTG
259 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTG
* * *
13509044 AACTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAAAAACTTTAATGGCTATT
324 AACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATT
13509109 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
389 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
13509174 GATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGTGCACACCCCCCG
454 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * *
13509239 GCCCCCCTGATCGCCGGAACACCAATGCTGCCAGTCAAGTTCTCCGATGATGCTCCGACGGTGGT
519 GCCCCCCCGATCGCCGGAAC-CCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* * * * * * * *
13509304 GCCCAGACAAAGAAAAATAAGGCGCCAGCACACGCCCGAGCCCAGCACGTGCTGCCCCAACCCTC
583 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCCACAACCCTC
* * * * * *
13509369 GGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAATGAGCGT
648 GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * ** * * *
13509434 GCAGGCGCTTAG-CAGGCCAGAAGGGCAGGATGCGCAAGTCGGGGATCGGTAAGGTCCCCTTTTA
713 GCGGGCGCTCAGCCA-GCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTG
* * *
13509498 TGTGCTGTCGATCCTGCTGCCGCAACCCTC
777 CGTGCTGCCAATCCTGCTGCCGCAACCCTC
13509528 GGTCTGGTCA
Statistics
Matches: 1495, Mismatches: 166, Indels: 67
0.87 0.10 0.04
Matches are distributed among these distances:
874 221 0.15
875 54 0.04
876 109 0.07
877 459 0.31
878 59 0.04
880 2 0.00
882 1 0.00
883 1 0.00
887 1 0.00
889 1 0.00
898 57 0.04
899 335 0.22
900 144 0.10
901 51 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (874 bp):
GTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
TGATTTTTGAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAA
CTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
CCCCCCGATCGCCGGAACCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCCACAACCCTCGGT
CCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTG
CTGCCAATCCTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACGGAGAATGAACTCCGTATG
CCTAAGCCAACCGACAAAACGAGCGGCGG
Done.