Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 84 of 190
Found at i:13510206 original size:26 final size:26
Alignment explanation
Indices: 13510177--13510227 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
13510167 TGGTCCGATC
13510177 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
13510203 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
13510228 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:13511555 original size:873 final size:885
Alignment explanation
Indices: 13509553--13511923 Score: 3235
Period size: 904 Copynumber: 2.7 Consensus size: 885
13509543 CTGGTAATGC
* * *
13509553 CGCAACCCTTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
1 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
*
13509618 TGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * *
13509683 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA-ACTTTTTACGATTTGGGACTTTTTAAAA
131 AAGACGACTCGTTTTCTATTTTTCATGA-TTTTCAATACTTTTTACGGTTCGAGATTTTTTAAAA
*
13509747 CTTTTTCAGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATG
195 TTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATG
* *
13509811 CACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTC
259 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
13509876 CCATTTCAGACACTTTAATTGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
324 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
13509941 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
389 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * *
13510006 CGCACATCATGTGCGCACACTCCCCCCAGCCCCCCCGATCGCC-AGAACCCTAATACCGCCGGTC
454 CGCACATC-T-TGTGCACACACCCCCC-GGCCCCCCGATCGCCGAGAACCCCAATGCCGCCGATC
* * * * * *
13510070 AGGTTCTCCGATGATGCTCC-GCGATGGTG-CTCCGGTGAGGAAAAATGTGGCACCAGCACATGC
516 AGGTTCTCCGGTGATGCTCCGGTGATGGTGCCTCCGGTAAAGAAAAAAGTGGCACCAACACATGC
*
13510133 CCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
581 CCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCCGATCTTAGACT-GG-A-GAA---C-
* **
13510198 TATGATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCACT
639 -ATG--TAGAC---G--T--ACT-CGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAACACT
** * *
13510263 CAGCCGACCAGAGGGATGGGATGCGCAAGCCAGGGATCACCCAAGTCCCCTTCTGTATGCTGCTG
693 CAGCCGACCAGAGGGACAGGATGCACAAGCCAGGGATCACCCAAGTCCCCTTCTGCATGCTGCTG
* * * ** *
13510328 ATGCTGCTATCATAACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAG
758 ATCCTACTATCACAACCCTCGATCCGGTCCGATCTTAGACCGAGAATGAACTTCGTATGCCTAAG
* * *
13510393 CCAACCGACTAAACGAGCGGGTGGACGGGCGGGCAGGCACTACGTCGGCCAAAGAGACGGGATG
823 CAAACCGACGAAACGAGC-GGTGGACGGGCGGGCAGGCACTACGCCGGCCAAAGAGACGGGATG
* * * *
13510457 GGCAAGCCGTGGATCGATAGAGTGGTAGGTGGATTTAGGCATATCTTCATATTTCTACGTGCCAA
1 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
* *
13510522 TGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
13510587 AAGATGACTCGTTTTCTATTTTTCATGATTTTC-ATAGCTTTTTATGGTTCGAGATTTTTTAAAT
131 AAGACGACTCGTTTTCTATTTTTCATGATTTTCAATA-CTTTTTACGGTTCGAGATTTTTTAAAA
* * * * *
13510651 TTTTTTTGGAAGGAGTTTTGGCCCTAAACTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGC
195 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGC
*
13510716 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCC
260 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
13510781 CATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAAAGCTCTTGAAGGGGG
325 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
13510846 TGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
390 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
13510911 CCACATCTTGTGCACACACCCCCCGGTCCCCCCGATCGCCGAAAACCCCAATGCCGTCGATCAGG
455 GCACATCTTGTGCACACACCCCCCGG-CCCCCCGATCGCCGAGAACCCCAATGCCGCCGATCAGG
** *
13510976 TTCTTTGGTGATGCTCCGGTGATGGTGCCT-CGGTAAAGAAAAAAGTGGCACCAACACATGCCTA
519 TTCTCCGGTGATGCTCCGGTGATGGTGCCTCCGGTAAAGAAAAAAGTGGCACCAACACATGCCCA
* * *
13511040 AGCCTAGCATGTGCTGTCGCAACCCTCGGTCTAGTCCGATCTTAGACT-G-GAA-ATG-A-AC-T
584 AGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCCGATCTTAGACTGGAGAACATGTAGACGT
* * * *
13511099 -CT-GTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGAACGCTCAGCC-AGCCAGAGGGGCAGG
649 ACTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAACACTCAGCCGA-CCAGAGGGACAGG
** * * ** * * * *
13511161 ATGCACAAG-TTGAGGATCGCTCGGGTCCCC-TCTGCGTGCT-ATCGATCCTACTGTCGCAACCC
713 ATGCACAAGCCAG-GGATCACCCAAGTCCCCTTCTGCATGCTGCT-GATCCTACTATCACAACCC
*
13511223 TCGGTCCGGTCCGATCTTAGACCGAGAATGAACTTCGTATGCCTAAGCAAACCGACGAAACGAGC
776 TCGATCCGGTCCGATCTTAGACCGAGAATGAACTTCGTATGCCTAAGCAAACCGACGAAACGAGC
*
13511288 -G-GG-CGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATG
841 GGTGGACGGGCGGGCAGGCACTACGCCGGCCAAAGAGACGGGATG
** *
13511330 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGGCGTGCTAA
1 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
* *
13511395 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCATGTGAAGTTTCATGGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
13511460 AAGACGACTCATTTTTTATTTTTCATGATTTTCAATACTTTTTGCGGTTCAAGATTTTTTAAAAT
131 AAGACGACTCGTTTTCTATTTTTCATGATTTTCAATACTTTTTACGGTTCGAGATTTTTTAAAAT
* *
13511525 TTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGTA
196 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCA
*
13511590 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
261 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
13511655 ATTTCAAATACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
326 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
13511720 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCG
391 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** * * *
13511785 CACATCATGTGCGTACACCCCCCGGCCCCCCGATCGTCG-GAACGCCAATGCCGCCGATTAGGTT
456 CACATCTTGTGCACACACCCCCCGGCCCCCCGATCGCCGAGAACCCCAATGCCGCCGATCAGGTT
* *** * * * *
13511849 CTCCGGCGATGCTCCGGTGATGGTGCC-CCGACGAAGAAAAATA-CGGCCCCAGCACATGCCCGA
521 CTCCGGTGATGCTCCGGTGATGGTGCCTCCGGTAAAGAAAAA-AGTGGCACCAACACATGCCCAA
13511912 GCCCAGCATGTG
585 GCCCAGCATGTG
13511924 AGTTTAGGCA
Statistics
Matches: 1310, Mismatches: 144, Indels: 59
0.87 0.10 0.04
Matches are distributed among these distances:
871 81 0.06
872 14 0.01
873 473 0.36
874 5 0.00
875 1 0.00
876 1 0.00
877 83 0.06
878 70 0.05
880 2 0.00
883 1 0.00
889 2 0.00
890 1 0.00
893 3 0.00
899 3 0.00
901 1 0.00
902 29 0.02
903 42 0.03
904 496 0.38
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (885 bp):
CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCATGATTTTCAATACTTTTTACGGTTCGAGATTTTTTAAAAT
TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCTTGTGCACACACCCCCCGGCCCCCCGATCGCCGAGAACCCCAATGCCGCCGATCAGGTT
CTCCGGTGATGCTCCGGTGATGGTGCCTCCGGTAAAGAAAAAAGTGGCACCAACACATGCCCAAG
CCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCCGATCTTAGACTGGAGAACATGTAGACGTAC
TCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAACACTCAGCCGACCAGAGGGACAGGATG
CACAAGCCAGGGATCACCCAAGTCCCCTTCTGCATGCTGCTGATCCTACTATCACAACCCTCGAT
CCGGTCCGATCTTAGACCGAGAATGAACTTCGTATGCCTAAGCAAACCGACGAAACGAGCGGTGG
ACGGGCGGGCAGGCACTACGCCGGCCAAAGAGACGGGATG
Found at i:13512499 original size:26 final size:26
Alignment explanation
Indices: 13512470--13512522 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13512460 CCGGTCCGAT
* *
13512470 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
13512496 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
13512522 C
1 C
13512523 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:13514282 original size:26 final size:26
Alignment explanation
Indices: 13514252--13514304 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13514242 TCGGTCCGTT
13514252 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13514278 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13514304 C
1 C
13514305 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13515172 original size:26 final size:26
Alignment explanation
Indices: 13515136--13515186 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13515126 GGTCCGATCC
* *
13515136 TAGACTAGGAATTAACTTCGTATGCT
1 TAGACTAGGAATGAACTACGTATGCT
*
13515162 TAGACTGGGAATGAACTACGTATGC
1 TAGACTAGGAATGAACTACGTATGC
13515187 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TAGACTAGGAATGAACTACGTATGCT
Found at i:13516698 original size:26 final size:26
Alignment explanation
Indices: 13516660--13516712 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13516650 CTAGTTCGAT
*
13516660 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13516686 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13516712 C
1 C
13516713 CTACGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13517577 original size:26 final size:26
Alignment explanation
Indices: 13517548--13517600 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13517538 TCGGTCCGAT
*
13517548 CTTAAATTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
13517574 CTTACACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
13517600 C
1 C
13517601 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:13519226 original size:11 final size:11
Alignment explanation
Indices: 13519210--13519242 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
13519200 CGGCCAAGTT
13519210 CTCCGGCGATG
1 CTCCGGCGATG
13519221 CTCCGGCGATG
1 CTCCGGCGATG
13519232 CTCCGGCGATG
1 CTCCGGCGATG
13519243 GTGCCCCGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.09, C:0.36, G:0.36, T:0.18
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:13519372 original size:26 final size:26
Alignment explanation
Indices: 13519322--13519374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13519312 CCAATCTGAT
**
13519322 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13519348 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13519374 C
1 C
13519375 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13521125 original size:26 final size:27
Alignment explanation
Indices: 13521089--13521146 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
13521079 CTGGTCTGAT
13521089 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
*
13521115 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
13521142 CTTAG
1 CTTAG
13521147 TCAACCCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:13522031 original size:26 final size:27
Alignment explanation
Indices: 13521995--13522052 Score: 109
Period size: 26 Copynumber: 2.2 Consensus size: 27
13521985 CTGGTCTGAT
13521995 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
13522021 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
13522048 CTTAG
1 CTTAG
13522053 TCAACCCACG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 26 0.84
27 5 0.16
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:13522938 original size:26 final size:26
Alignment explanation
Indices: 13522902--13522954 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13522892 CCGGTACGAT
13522902 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13522928 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13522954 C
1 C
13522955 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13523728 original size:904 final size:904
Alignment explanation
Indices: 13516234--13525848 Score: 12073
Period size: 904 Copynumber: 10.8 Consensus size: 904
13516224 TCGTTTTCTA
* *
13516234 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCA
1 TTTTTCAGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * * *
13516298 CAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTATGTGGCCAATTGAATAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
13516363 ATTTCAGACACTTTAATGGCTACTGGCAGTAAACTTATAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
13516428 GTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * *
13516493 CACATCATGTGCGCACACCCCCTGACCCCTCCGATCGTCAGAACGCCAATGCCGTCGGTCAGGTT
261 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * ** * *
13516558 CTCCAGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
326 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCAGAGC
* * * * **
13516623 CCAACATGTGCTACCGAAACCCTCGATCTAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGC
391 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
13516687 TTAGACTAGGAATGAACTCCGTATGCCTACGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCT
455 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * *
13516752 AGCCAGAAGGGCGGGATGCGTAAGCCGAGGATCGATCGAGTCCCCCTCTACGTGCTGTCGATCCT
520 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
** ** * * * * **
13516817 GCTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGCTGA
585 GCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAA
* *
13516881 CCAACGAAACGAGC--G-GG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
649 CCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
13516942 GCCGTAGATCGATAGGGTGGTAGGTAGGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCA
714 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
13517007 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGAT
779 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13517072 GACTCGTTTTCTATTTTTCACGATTTTTGAATCTTTTT-GCAGTTCGAGA-TTTTTAAAAT
844 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGCGGTTCGGGATTTTTTAAAAT
*
13517131 TTTTTC-GAACGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
1 TTTTTCAGAA-GGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * * * * *
13517195 AAAAAAAAACTTCAGGTAAAAGCTTGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTTC
65 ACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
13517260 CCATTTCAAACACTTTAATGGCTACTGGCAGCGAACCTGTAGAATCTCAGATGCTCTTTAAGGGG
129 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * ** *** *
13517325 GTGCGAGTTCTTAAGGCATGATGAGATTTAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCAT
194 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * ** *
13517390 CGCACATCATGTGCGGACGCCCCCCGGCCGCCCCGATCATCGGAACCCC-ATCGCCGCCGGTCAG
259 CGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAAT-GCCGTCGGTCAG
* * *
13517454 GTTCT-C--CGA--------CGATGGTGCCCCAACGAGGAAAAATGCGGCACCAACACATGGCC-
323 GTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACAT-GCCA
* * * * * *
13517507 GAGCCCAGCATGTGCTACAGCAACCCTCGGTTCGGTCCGATCTTAAATTGGGAATGAACTCCGTA
387 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * *
13517572 TGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTGCTCA
452 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
13517637 ACCGGCCATAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTTTGCGTGCTGTCGAT
517 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGAT
* ** * * * *
13517702 CCTGCTGCCACAACCCTCGGTCCGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
582 CCTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
* * *
13517767 AACCGACGAAACGA----GC-GA-------GCGGGCACTACACCGGCTAGAGAGACGGGATGCGG
647 AACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * **
13517820 AAGTCATGGATCGATAGGGTGATTA-GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
712 AAGCCGTGGATCGATAGGGTG-GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
** *
13517884 CCATTTTTATGGCTTGTAAATTCATACAACAGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
776 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * ** * *
13517949 GATGTCTCATTTTCTATTTTTCATGATTTTCAAAACTTTTT-GCAGATCGGGATTTTTTAAAAT
841 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGCGGTTCGGGATTTTTTAAAAT
** * * * *
13518012 TTTTTGGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTTTTTGGCATGCA
1 TTTTTCAGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
13518077 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAACGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
13518142 ATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGC
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
13518207 GTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *** * * *
13518272 CACATCATGTGCGCACACCTTCCCTGG-----CC--TCCCCGGAACTGTAATGCCGCCGGTTAGC
261 CACATCATGTGCGCACACC--CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * * * * *
13518330 TTCTCCGGCAATGCTCCGACGATGGTGCCTC-AGCGAAGAGAAATATGGCACCAACACATGCCCG
324 TTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGTGGCACCAACACATGCCAG
* * * * *
13518394 AGCCTAGCATGTGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGGCTGGGAATGAACTCCATAT
388 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * *
13518459 GCTTATACTGGGAATGAACTCTGTATGCCTAAGTCAACTCACGAAACGAGCGTGC-GG-G-T---
453 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
13518518 --GGTC--A---GC--CA-GC-C-AG--AGGG---G--CGGGTCCCCCTCTGCATGCTGTCGATC
518 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* ** * ** * ** *
13518564 CTACTGTCGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACT-TCGTGTGCCTAAGCC
583 CTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCC
* ** * ** * * *
13518628 AATCGACGAAACGAAAGGGTGGGTGGGCGGGCGGGCACTACGTCGACCAGAGAGACGAGATGCGC
647 AACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
13518693 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
712 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
13518758 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
777 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
13518823 ACAACTCGTTTTCTATTTTTCACAATTTTTGAAAC-TTTTGGCGGTTCGAGATTTTTTTAAAT
842 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGCGGTTCGGGATTTTTTAAAAT
* * * * * *
13518885 ATTTTCGGAAGGTGTTTTGGCCCCAAATTTGGTACACGTCATCCTTGTA-TTTTGTTGGCATGCA
1 TTTTTCAGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
13518949 -AAAAGAAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
66 CAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
13519013 CATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGG
130 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
**
13519078 TGTGAGTTCTCGGGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
195 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** * * *
13519143 GCACATCATGTGCGCACGCCCTCTTGGCCCCCCCGATTGCCCGAACCCCAATGTCGTCGGCCAAG
260 GCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTC-G----G
* * *
13519208 TTCTCCGGCGATGCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACAAA
319 ---T-CAG-G-TTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAA
* * * * **
13519273 CACCT-CTC-GAACCTAGCATGTGCTGCCGCAACCCACGGTCCAATCTGATCTTAGACTGGGAAT
378 CACATGC-CAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
** * *
13519336 GAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTA
442 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * ** * * *
13519401 CGGGTGCTCAGCCGGCCAGATGGGCAAGATGCGCAAGTCGGGGATCGACGGGGTCCCCCTCTGCA
507 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCG
* * ** * *
13519466 TGTTGGCGATCCTGCTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATAAACTCCGTA
572 TGCTGTCGATCCTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTA
** * * * * *
13519531 TGCCTAAGCCAATTGATGAAACGAGCGGGCAGG-CGGACGGGCAGGCACAACGCCGGTCAGAGAG
637 TGCCTAAGCCAACCGACGAAACGAGCGGGC-GGACGGGCGGGCGGGCACTACGCCGGCCAGAGAG
*
13519595 ACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
701 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
*
13519660 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGT
766 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * * * *
13519725 TTCATGGCAAGACGGCTCGTTTTTTATTTTTCATGATTTTTAAAACTTTTT-GC-GTTTGGAATT
831 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGCGGTTCGGGATT
13519788 TTTTAAAAT
896 TTTTAAAAT
** ** * * *
13519797 TTTTTTGGAAGGAGTTTTACCCCCAAAGTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCACGCA
1 TTTTTCAGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
13519862 CAAAAAAATTTAGCTAAAATCTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGT-CCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
13519926 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
** *
13519991 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCG
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
13520056 CACATCATGTCCGCACACCCCCC-GCCCCCCCGATTGCCAGAACCCCAATGCCGTCGGTCAGGTT
261 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * *
13520120 CTCTGACGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGC
326 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCAGAGC
* * * *
13520185 CTAGCATGTGCTACCGTAA----C---CC--TCAG-TC-----C---G---G---TCCG-AT-CT
391 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
13520224 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGTCG
456 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
13520289 GCCAGAGGGGTGGGATGCGCAAGCCGAGCATCGGCCGGGTCCCCGTCTGCGAGCTG-CTTATCCT
521 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTC-GATCCT
* * * * * * *
13520353 GCTACCGCAGCTCTCAGTCTGAT-TGATCTTACACTAGGAATGAACTCTGTGTGCCTAAGCCAAC
585 GCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
* * * * *
13520417 CGGCGAAAC-A------AG-CGGGCGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCACAAG
650 CGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
13520474 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCGTGCCAATGCCAT
715 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
13520539 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGATG
780 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
13520604 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-GTGGTTTGGGATTTTTTAAAAT
845 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGCGGTTCGGGATTTTTTAAAAT
* * * *
13520663 TTTTTCAGAAGGAGTTTTAGCCGCAAAATTGGCAGACGTGATCCTTTTATTTTTGTTGGCATGCA
1 TTTTTCAGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * * *
13520728 TAAAAAAATTTAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTCAAAAAAGTGTCTCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
13520793 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGACGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
13520858 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAATACTAGCACCCATCA
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** * *
13520923 CACATCATGTGCCCACACCCCCCGG-CCCCCCGATCGTTGAAACCCCAATGCCGTCGGTCAAGTT
261 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * *
13520987 CTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACATATGCCAGAGT
326 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCAGAGC
*
13521052 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
391 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
13521117 TAGACTGGGAATGAACTTCGTATGCCTTAGTCAACCCATGAAACGAACGTGCGGGTGCTCAGCCG
456 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * ** *
13521182 GCCAGAGGGGCGGGATGCACAAGTCGGGGATCGCCCGGGTCCCCGTCTATGTGTTGTCGATCCTG
521 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
*** * *
13521247 CTACTACAACCCTCGGTCTGAT-TGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
586 CTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
* ** * * *
13521311 GACGAAATGAACAGACGGGCGGACGAACGGGCGGGCACTACACCGGCCAAAGAGACAGGATGCGC
651 GACGAAACG---AG-CGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
13521376 AAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCGTGCCAATGC
712 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
13521441 CATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAG
777 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** *
13521506 ACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTA-CGGTTCAGGATTTTTTAAAAT
842 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGCGGTTCGGGATTTTTTAAAAT
* * * *
13521568 TTTTTCAGAAGTAGTTTTGTCCCTAAAATTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
1 TTTTTCAGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
13521633 C-AAAAAATTTAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTCAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
13521697 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
13521762 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAATACTAGCACCCATCA
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *** * *
13521827 CACATCATGTGCCCACACCCCCCCGGCCCCCCCGATCATTGAAACCCCAATGCCGTCGGTCAAGT
261 CACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* *
13521892 TCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACATATGCCAGAG
325 TCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCAGAG
* *
13521957 TCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
390 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
13522022 TTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAACGTGCGGGTGCTCAGCC
455 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * ** *
13522087 GGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGCCCGGGTCCCCGTCTATGTGTTGTCGATCCT
520 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
*** * * *
13522152 GCTACTACAACCCTCGGTCTGAT-TGATCTTAGACTGGGAACGAACTCTGTATGCCTAAGCCAAC
585 GCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
** *
13522216 CGACGAAACGAGCGGACGGGCGGACGAACGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCG
650 CGACGAAACGA---G-CGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
13522281 CAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCT-CTGTGCCAAT
711 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-ATGCCAAT
* *
13522345 GCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCA
775 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
13522410 AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTA-CGGTTCAGGATTTTTTAAAAT
840 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGCGGTTCGGGATTTTTTAAAAT
* * * *
13522474 TTTTTCAGAAGTAGTTTTGTCCCCAAAATTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCA
1 TTTTTCAGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
13522539 CAAAAAAATTTAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTCAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
13522604 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
13522668 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
13522733 CACATCATGTGCGCACACCCCCCCCGGCACCCCTGATCACCGAAACCCCAATGCCGTCGGTCAGG
261 CACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
* *
13522798 TTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCAGA
324 TTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCAGA
* * *
13522863 GCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTAC-GATCTTAGACTGGGAATGAACTCCATAT
389 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
13522927 GCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAATGAGCATGCGAGCACTCAG
453 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
13522992 CCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCAAGCTGTCGATC
518 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * *
13523057 CTGCTATCGTAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAAGCCA
583 CTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* * ** * *
13523122 ACTGACGAAACGAGCGGGCGGATGGGCGGATGGGCACTACGCCGGCCAAAGAGACGGTATGCGCA
648 ACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
13523187 AGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGC-CAATCTTCATAGTTCTGCATGCCAATGC
713 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC-ATCTTCATATTTCTGCATGCCAATGC
* * *
13523251 CAGTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTTATGGCAAG
777 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * *
13523316 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTAGCAGTTCGGGATTTTTTAAAAT
842 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGCGGTTCGGGATTTTTTAAAAT
*
13523379 TTTTTCAGAAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCAGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * *
13523444 CAAAAACATTCAACTAAAAACACGAAGTGTCCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
13523509 ATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
13523574 GTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * ** * *
13523639 TACATCATGTGCGCACACCCGCCGGCCCCCCCGATCGTTGGAACCCCAAAGCCGCCGGTCAGGTT
261 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * ** * * *
13523704 CTCTGGTGATGCTTCGGCGATGGTGCCCCGATGAAGAAAAATGCAGCACTAGCACATGCCCGAGC
326 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCAGAGC
* * * * * *
13523769 CCAGCATGTGCTGCCACAACACTTGGTCTGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCT
391 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* ** * *
13523834 TAGAGTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGAGTGCTCAGCCG
456 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
13523899 GCCAGAGGGGCAGGATGTGCAAGCCGGGGATC-AGTCGGGTCCCCCTGTGCGTGCTGCCGATCCT
521 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * * *
13523963 ACTACCGCAACCCTCAAT-TCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCTAA
585 GCTACCGTAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * * *
13524027 CCGACGAAACGAGCAGGCGGGCGGGTGGGCGGGCATTATGCCGGCCAGAGAGACGGGATGCGCAA
649 CCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
13524092 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTTTGCATGCCAATGCCA
714 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * * * *
13524157 TTTTTATGACTCGTAAATTCATACAATGGTCCTTTATGCCTTCACGTGAAGTTTCATGGCGAGAT
779 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
13524222 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-CGGTTCGGGATTTTTTAAAAT
844 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGCGGTTCGGGATTTTTTAAAAT
* * * * *
13524282 TTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATGTTTGTTGGCATGCA
1 TTTTTCAGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
13524347 CAAAAAACTTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
13524412 ATTT-GGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
**** *
13524476 GTGAGTTCTCAAGGTTTGATGTTTAATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCG
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
13524541 CACATCATGTGCACACACCCCCCCGGTCCCCCCGATCGCCGGAACCCCAATGCCGTTGGTCAGGT
261 CACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* * * * **
13524606 TCTCCGACGATGCTCCAGG-GATGGTGCCCCGAGGAAGAAAAATGTGGCACTAGCACATGCTTGA
325 TCTCCGGCGATGCTCC-GGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCAGA
* ** * * * ** * * *
13524670 GCCCAGCAAGTTATACCGCAACCCTCGGTCTGATCCAATCTTTGACTGGGCATGAACTCTGTATG
389 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
13524735 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTACGGGCGCTCAGT
454 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
13524800 CGGCAAGAGGGGAGGGATGCAG-AAACCGCGGATCGATTGGGTCCCCCTCTGCGTGCTGCCGATC
519 CGGCCAGAGGGGCGGGATGC-GCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * *
13524864 CTGCTGCCGTAACCCTC-GATCCGGTCCGATCTTAGATTGGCAATGAACTCTGTATGCCTAGGCC
583 CTGCTACCGTAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
* * *** * *
13524928 AACCGATGAAACGAGCGGGCGGGCGGGCGGGCGAAAACTACGTCGGCCAGAGAGACGGGATGCGA
647 AACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
13524993 AAGTCATAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
712 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
13525058 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAG
777 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * *
13525123 ACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTT-GTGGTTCGAGATTTTTTAAAAT
842 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGCGGTTCGGGATTTTTTAAAAT
* * * * * *
13525185 TTTTTCGGAAGGAGTTTTGGCCCCATACTTGGTAGATGTGATGCTTATATTTTTGTTGGCATGCA
1 TTTTTCAGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
13525250 CAAAACAATTCAGCTCAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
13525315 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTCAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
13525380 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
13525445 CACATCATGTGCGCACACCCCTCGG-CCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTT
261 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * *
13525509 CT-C--CGA--------CGATGGTGCCCCGGCGAAGAAAAATGTTGCACCAGCACATGCCCGATC
326 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCAGAGC
* * * * * * *
13525563 CCAGCATGTGCTGCCGTAACCCTCAGTCCAGTCTGAACTTA-ATTTGGGAATGAA-TCAGCATGC
391 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGA-CTGGGAATGAACTCCGTATGC
* *
13525626 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCTACCCACGAAACGAGCGTACGGGCGCTCAGCC
455 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * ** **
13525691 GACCAGAGGGGCGAGTTGATCAAGCCGGGGATCGACCGGGT-CCCCTCTGCGTGCTACCGATCCT
520 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* ** * ** * * *
13525755 GCTACCATAACCCTTGGTCTGATCCAATCTTAGA-TCGGGAATGAACTCCGCATGCTTAAGCCAA
585 GCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACT-GGGAATGAACTCTGTATGCCTAAGCCAA
* * * *
13525819 CCAACGAAACGAGTGGGCGGGCGGGTGGGC
649 CCGACGAAACGAGCGGGCGGACGGGCGGGC
13525849 AGACGGGCGG
Statistics
Matches: 7693, Mismatches: 853, Indels: 352
0.86 0.10 0.04
Matches are distributed among these distances:
861 92 0.01
863 1 0.00
865 199 0.03
866 134 0.02
867 249 0.03
868 3 0.00
869 1 0.00
870 3 0.00
871 10 0.00
872 218 0.03
873 279 0.04
874 128 0.02
875 25 0.00
876 11 0.00
877 4 0.00
878 19 0.00
879 2 0.00
880 370 0.05
881 77 0.01
882 9 0.00
883 2 0.00
884 1 0.00
885 8 0.00
886 142 0.02
887 1 0.00
888 385 0.05
889 152 0.02
890 103 0.01
891 85 0.01
892 2 0.00
893 176 0.02
894 1 0.00
896 10 0.00
897 46 0.01
898 26 0.00
899 272 0.04
900 22 0.00
901 5 0.00
902 169 0.02
903 815 0.11
904 1062 0.14
905 475 0.06
906 849 0.11
907 404 0.05
908 51 0.01
909 1 0.00
910 30 0.00
911 2 0.00
912 202 0.03
913 350 0.05
914 10 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (904 bp):
TTTTTCAGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCAGAGC
CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
CTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGCGGTTCGGGATTTTTTAAAAT
Found at i:13526096 original size:26 final size:26
Alignment explanation
Indices: 13526066--13526118 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13526056 CCGGTTCGAT
*
13526066 CTTAGATTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
**
13526092 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
13526118 C
1 C
13526119 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:13526306 original size:468 final size:453
Alignment explanation
Indices: 13525435--13526311 Score: 1095
Period size: 467 Copynumber: 1.9 Consensus size: 453
13525425 CCAAGTACCA
* *
13525435 GCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCATC
1 GCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCATC
* * *
13525500 GGTCAGGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTTGCACCAGCACATGCCCGATCCC
66 GGTCAGGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTCGCACCAGCACATGCCCAAGCCC
** **
13525565 AGCATGTGCTGCCGTAACCCTCAGTCCAGTCTGAACTTAATTTGGGAATGAATCAGCATGCTTAG
131 AGCATGTGCTGCCACAACCCTCAGTCCAGTCTGAACTTAATTTAAGAATGAATCAGCATGCTTAG
* * *
13525630 ACTGGGAATGAACTCCGTATGCCTAAGTCTACCCACGAAACGAGCGTACGGGCGCTCAGCCGACC
196 ACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACC
* * *
13525695 AGAGGGGCGAGTTGATCAAGCCGGGGATCGACCGGGTCCCCTCTGCGTGCTACCGATCCTGCTAC
261 AGAGGGGCGAGATGAGCAAGCCGAGGATCGACCGGGTCCCCTCTGCGTGCTACCGATCCTGCTAC
* * *
13525760 CATAACCCTTGGTCTGATCCAATCTTAGATCGGGAATGAACTCCGCATGCTTAAGCCAACCAACG
326 CATAACCCTCGATCTGATCCAATCTTAGATCGGGAATGAACTCCGCATGCCTAAGCCAACCAACG
*
13525825 AAACGAGTGGGCGGGCGGGTGGGCAGACGGGCGGGCACTACGTCGGCTGGAGAGACGGGATGC
391 AAACGAATGGGCGGGCGGGTGGGCAGACGGGCGGGCACTACGTCGGCTGGAGAGACGGGATGC
*
13525888 GCACCCATCACACATCATGTGTGCACACCTCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCC
1 GCACCCATCACACATCATGTGCGCACACC-CCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCC
* *
13525952 GTCGGTCAGGTTCTTCGGCGATGCTCTGATGATGGTGCCCCGGTGAAGAAAAATG-CGACACCAG
63 ATCGGTCAGGTTC-TC--CGA----C----GATGGTGCCCCGGCGAAGAAAAATGTCG-CACCAG
** * *
13526016 CACATGCCCAAGCTTAGCATGTGCTGCCACAACCCTC-GCTCCGGT-TCGATCTTAGA-TTAAGA
116 CACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCAG-TCCAGTCT-GAACTTA-ATTTAAGA
* *
13526078 ATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
178 ATGAA-TCAGCATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * ** * *
13526143 TGCGGGTGCTCAACCGGTCAGAGGGGC-AGGATGCGCAAGCCGAGGATC-ATCCGGGTTGCCCTC
242 TACGGGCGCTCAACCGACCAGAGGGGCGA-GATGAGCAAGCCGAGGATCGA-CCGGG-TCCCCTC
* ** * ** *
13526206 TGTGTGCTGTCGATCCTGCTACCGTAACCCTCGATCT-AGTCTGATCTTAGATTGGGAATGAACT
304 TGCGTGCTACCGATCCTGCTACCATAACCCTCGATCTGA-TCCAATCTTAGATCGGGAATGAACT
* * *
13526270 CTGTATGCCTAAGCCAACCGACGAAACGAATGGGCGGGCGGG
368 CCGCATGCCTAAGCCAACCAACGAAACGAATGGGCGGGCGGG
13526312 CACTACGCCG
Statistics
Matches: 357, Mismatches: 44, Indels: 31
0.83 0.10 0.07
Matches are distributed among these distances:
453 27 0.08
454 6 0.02
455 37 0.10
456 2 0.01
458 3 0.01
462 1 0.00
465 3 0.01
466 83 0.23
467 99 0.28
468 96 0.27
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (453 bp):
GCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCATC
GGTCAGGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTCGCACCAGCACATGCCCAAGCCC
AGCATGTGCTGCCACAACCCTCAGTCCAGTCTGAACTTAATTTAAGAATGAATCAGCATGCTTAG
ACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACC
AGAGGGGCGAGATGAGCAAGCCGAGGATCGACCGGGTCCCCTCTGCGTGCTACCGATCCTGCTAC
CATAACCCTCGATCTGATCCAATCTTAGATCGGGAATGAACTCCGCATGCCTAAGCCAACCAACG
AAACGAATGGGCGGGCGGGTGGGCAGACGGGCGGGCACTACGTCGGCTGGAGAGACGGGATGC
Found at i:13530382 original size:869 final size:872
Alignment explanation
Indices: 13527408--13547032 Score: 21283
Period size: 890 Copynumber: 22.1 Consensus size: 872
13527398 CCAAAACTTG
* ** * * *
13527408 GCCGCAACCCTCGGTTTGGTTTGATCTTAGACTAGGAATGAACTCCGTATGCCTAATCCAACCGA
1 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * *
13527473 CGAAATGAGCGGACGGGAGGGTCGGCGGGCGGGCACTGCACCGACCAGGGAGACGGGATGCGCAA
66 CGAAACGAGCGGGC-GG-GCG--GGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
* * *
13527538 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTACCTTCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * * *
13527603 TTTTTCTGGCTTGTAAATTCATACAATGGACCTTTAAGCCTTCACGTGATGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
13527668 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGTTTCGAGATTTTTTAAAATTTTTT
257 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
13527733 CGGAAGGGGTTTTGGCCCCAACCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAA
322 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
13527798 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
387 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
13527863 AGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
13527928 TTCTCAAGGTTTGATGAGTGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
517 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * **
13527993 CATGTGCGCACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATACCGTTGGTCAGGTTCTC
582 CATGTGCGCACA-CCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
13528058 CGACGATGCTCCGACGATGGT-CTCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCAAGCCC
645 CGACGATGCTCCGACGATGGTGC-CCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* * *
13528122 AGCATGTGCTGTCGTAACCCTCGG-TCTGG-TCCG-A-GCGTAGACTGGGAATGAACTCCGTATG
709 AGCATGTGCTGCCGCAACCCTCGGTTCTGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * * *
13528183 TCTAAGTTAACCCATGAAACAAGCGTGCAGATGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGT
774 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
*
13528248 CGGGGATGGGTCGGGTCCCCCTCTGTGTGCTATTGATCCTGCT
839 CGGGGATCGGTCGGGTCCCCCTC--TGTGC----GA---TGCT
* * * *
13528291 ACCGCAACCCTTTG-TCTGG-CACGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 GCCGCAACCC-TCGATCCGGTC-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * ** *
13528354 GACGAAACGAGCGAGCAGGCGGGCGGGCGGGCACTACGCCGGTC-GAAGAGACGAGATGCGCAAG
64 GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAG-AGAGACGGGATGCGCAAG
*
13528418 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
128 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
13528483 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTTC-TGGCAAGAC
193 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGAC
* * *
13528547 GACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAACATTTTT
257 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTT
* * * *
13528611 TCAGAAGGAGTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAA
321 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
13528676 ACAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
13528741 CAGACACTTTAATGGCTACTGGCAGCAAA-CTCGTAAAATATCAAATGCTCTTTAAGGGGGTGTG
451 CAGACACTTTAATGGCTACTGGCAGCAAACCT-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13528805 AGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
515 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
13528870 ATCATGTGCGCACA-CCCCCCGGCTCCCCGATCGCCGGAACCCCAATGTCGTCGTTCAAGTTATC
580 ATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * * *
13528934 CGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGAGGCACCAGCATATGCCCGAGCCCA
645 CGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* *
13528999 GCATGTGCTACCGCAACCCTCGG-TCCGG-TCC-TAT-CTTAGACTGGGAATGAACTCCGTATGC
710 GCATGTGCTGCCGCAACCCTCGGTTCTGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * *
13529060 CTAAGTCAACCGACAAAACGAGCGCGCGGGCGGTCAACCGGCCAGAGGGGAGGGATGCGCAAGAC
775 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
** *
13529125 GGGGATCGACCAGGTCCCCCTCTACGTGCTGCCAATCCTGCT
840 GGGGATCGGTCGGGTCCCCCTCT--GTGC-G---A---TGCT
* * ** *
13529167 GCCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA
1 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
13529232 CG-AA--A-CGGGCGGACAGACGGGCGGGCACTATGCCGACCAGAGAGACGGAATGCGCAAGCCG
66 CGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
* *
13529293 TAGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
13529358 TATGGATTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
13529423 CGTTCTCTACTTCTCATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGA
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGG
* * * * **
13529487 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGCTCCTTGCATTTTTTTTGCCACACACAAAAAAA
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
13529552 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
390 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
13529617 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
455 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
13529682 TCAACGTTTGATGAGGGATAGGGGGCCAATATACA-GGCCAAGTACCAGCA-CCATCGCACATCA
520 TCGAGGTTTGATGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * ** * * *
13529745 TGTGTGCGCACCCCCTCCGGCCCCCCAAACGCCAGAACCATAATGCCGCCGATTAGGTTCTTCGA
584 TGTGCGCACACCCCC-CCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * *
13529810 CGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGTCTGAGCCCAGCA
648 CGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
*
13529875 TGTGCTGCCACAACCCTCGGTTC-GG-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTA
713 TGTGCTGCCGCAACCCTCGGTTCTGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * ** * *
13529936 AGTCAACCCACGAAATGTGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGAAAAGCGCAAGTCGGG
778 AGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
13530001 GATCGGTCGGGTCCCCCTCT-T-C-ATGCT
843 GATCGGTCGGGTCCCCCTCTGTGCGATGCT
* *
13530028 GCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA-CGA
1 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG-
* *
13530092 ACGAAACGAGCGGGCGGGCTGGCGGGCGGGCGGGCACTACGCCGACTAGAGAGACGGGATGCACA
65 ACGAAACGAGCGGGC--G--GGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCA
* *
13530157 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * *
13530222 ATTTTTATGGCCTGTAAATTCGA-ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGTAAG
191 ATTTTTATGGCTTGTAAATTC-ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
13530286 AAGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTT
255 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* *
13530351 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAA
320 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
13530416 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCTTTTGACAAAAA-TGTCCCAAT
385 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCCAT
13530480 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
449 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
13530545 GAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
514 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
13530610 CATCATGTGCACACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
579 CATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * ** * * * *
13530674 CCGACGATGCTCTGGCAATGGTGCCCCGAAAAAGAAAAATGTGGCACTAGCACATTCCCGAGCCC
644 CCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* *
13530739 AGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTA
709 AGCATGTGCTGCCGCAA-CC-C--TC--G---G---TT---CT-GG-AT---C--CGTATGCTTA
* * * * * *
13530804 GACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGTGTGCAGGCGCTCAGCC-AC
752 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGC
* * * * * *
13530868 CTAGAGGGGTGAGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTACGTGCTATCAATCCT
817 C-AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC-C-CT-C-TG-T-GCGATGCT
* * *
13530931 ACTACTGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAAC
1 GC--C-GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** * * * * * * *
13530996 TGACGAAACGAGCAGGTAGGTGGGCCGGCGGGCATTACGCTGGCCAGAGAGACGAGATGTGCAAG
63 CGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAG
* * *
13531061 CCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTACGTGCCAATGCCAT
128 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* *
13531126 TTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTCTCATGGCAAGACG
193 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
**
13531191 ACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
258 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
13531256 GGAAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAC
323 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
13531321 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCA
388 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
13531386 GACACTTTAACGTCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGT
453 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
13531451 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATC
518 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * * *
13531516 ATGTGCACACACACCCCCCGACCCCCCGATCACCGGAACCCTAATGCCGTCGATCAGGTTTTTCG
583 ATGTGCGCACAC-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * *
13531581 ACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACATATGGCCGAGCCCAGC
647 ACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
*
13531646 ATGTGCTGCCGCAACCCTCGGTCCAATTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAGAC
712 ATGTGCTGCCGCAACCCTC-G--------G---TT---CT-GG-AT---C--CGTATGCTTAGAC
* * *
13531711 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGTGCTCAACCGGCCAG
755 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * * * *
13531776 AGGGGTGGGATGCGCAAGCCGAGGATTGGCCGGGTCCCCCTCTACGTGCAGCCGATCCTACT
820 AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT--GT---G-CGA---TGCT
* * * *
13531838 GCCGTAACTCTC-AGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCG
1 GCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * *
13531902 ACGAAATGA--------GTGGGCGGGCGGGCACTACGCCGACCAGAGAGACAGGATGCGCAAGCC
65 ACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
* ** *
13531959 GTGGATCGATGGGGTGGTAGGTGGGTTTAGGTGCATCTTCATATTTCTGCATGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
13532024 TTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** ** *
13532089 TCGTTTTCTATTTTTCACAATTTACGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGG
260 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* *
13532154 AAGGAGCTTTGGTCCCAAACTTGGTAGACGTGATCCTT-TAATTTTTGTTGGCATGCACAAAAAA
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAA
* * * * *
13532218 ATTCAGCTAAAGACTTGAAGGGTACAAGATTTAGTGACCATTTGAAAAAAGTTTCCCCATTTCAG
389 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
13532283 ACACTTTAATGGCTATTGGCACCAAACTTGT-AAATCTC--A--------AA-------T--G--
454 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
13532326 CTC-----TT--T-----A-AGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCA
519 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * ** *** * *
13532378 TGTACGCATACCCCCACCTGACCCCTCGATCGTCGG-ACCCTGATGCCATTGGTCAAGTTCTCCA
584 TGTGCGCACACCCCC-CC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* *
13532442 ATGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGTCCGAGCCCAGC
647 ACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
*
13532507 ATGTGCTGCAGCAACCCTCGGTCCAATATGATCTTAGATTGGGAATGAACTCTGTATGCTTAGAC
712 ATGTGCTGCCGCAACCCTCGG-------T--TC------T-GG-AT---C-C-GTATGCTTAGAC
* * * *
13532572 TGGGAATGAACTCCATATGCGTAAGTCAACACACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAG
755 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * *
13532637 AGGGGCAGGATCCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCTTGCTGTTGATCTTGCT
820 AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG--TGC----GA---TGCT
* * * * *
13532699 GTCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGGATGCCTAAGCCAACCGA
1 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * * * *
13532764 CGAAATGAGTGGGCGGGCGGGCGGGCGGGGACTACGTCGGCCAGGGAGACGGGATGCACAAACTG
66 CGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
* * * * * *
13532829 TGGATCGATAGGGTGGTAGTTGGGTTTATGTACAACTTCATATTTTTACGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
13532894 TATGGCTTGTAAATTCATACAATGGT-CCTTCAAGCCTTCATGTGAAGTTTCATGGCAAGACCAC
196 TATGGCTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
13532958 TAGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-TG
260 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * *
13533022 AATGGAGTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTTTTGGTATGCACAAAAAA
325 AA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
13533087 AGTT-AGCTAAAAACCCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCA
389 A-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
13533151 GACACTTTAATGGCTACTGGCTGCAAACTTGTAAAATCTAAAATGCTCTTTAA-GGGGTGTGAGT
453 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
13533215 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
518 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
13533280 ATGTGCGCACACACCCCCCGGCCCCTCTGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCC
583 ATGTGCGCACAC-CCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * * * **
13533345 AGGGGTTGCTCCGGCGATGGTGCCCCAGA-GAAGAAAAATACGGCACCAACATATGCCCGAGCAA
646 -GACGATGCTCCGACGATGGTGCCCC-GATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
13533409 AGCATGTGCTGCCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
709 AGCATGTGCTGCCGCAA-CC-C--T-C-G---G---TT---CT--G---G-A-TCCGTATGCTTA
13533474 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGC
752 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGC
* *
13533539 CAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCATCTATGTGCTGTCGATCCTGCT
817 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC--C--TCTG-TG-CGA---TGCT
** * * * *
13533604 GGTGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCCAAACCAACCGA
1 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * **
13533669 CGAAATGA--------GCGGGCGGGCGGGCACTACACCGGCCAGAGAGACAGGATGTGCAAATCG
66 CGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
* * ***
13533726 TGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
13533791 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAATTTTCATGGCAAGATGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
13533856 CATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAACTTTTTCGGA
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * * *
13533921 AGGAGTTTTGGCCCCAAACTTAGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATAT
326 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
13533986 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGAC
391 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
13534051 ACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTAAGTTCT
456 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
13534116 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATG
521 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * *
13534181 CGCGCGCA-CCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCACCAGTTAGGTTCTCCGGCG
586 TGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * * * * *
13534245 ATGATCCGGCGATGGTGCCCTGATGAAGAAAAATACGGCACCAGCGCATGCCCGAGCCCAGCATG
650 ATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
*
13534310 TGCTGCCACAACCCTCGATCCGGTCCGATCGTAGACTGGGAATGAACATCGTATGCTTAGACTGG
715 TGCTGCCGCAA-CC-C--T-C-G---G-T--T---CT-GG-AT---C--CGTATGCTTAGACTGG
* * * *
13534375 GAATGAGCTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACTAGAGG
758 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
* * ***
13534440 GGTGGGATGCGCAAGCCGGGGTTCAACCGGGTCCCCCTCTACGCGCTGCCGATCCTGCT
823 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT----G-TG-CGA---TGCT
* * * * * *
13534499 GCCACAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATCAACTCCGTAAGCCTAAGCCAACCGA
1 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
13534564 CGAAACGA------------GCGGGCGGGTACTACGCCGACCAAAGAGACAGGATGCGCAAGCCG
66 CGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
* *
13534617 TGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* * *
13534682 TATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCATGTGAAGTTTCATGGCAAGACCACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * *
13534747 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTGTTAAAATTTTTTTGGA
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * ** * *
13534812 TGGAGTTTGGGCAACAAACTTGGT-GATGTGACCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
326 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
13534876 TCATCTAAAAATTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
391 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
13534941 ACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTGAAGGGGGTGTGAGTTCT
456 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
13535006 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATCACACATCACG
521 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * *
13535071 TGCGCACACCCCCCAGCCCCCCCGATCGCTGGAACCCCAATGCCACCGGTTAGGTTCTCCGGCAA
586 TGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* ** * * *
13535136 TGATCCGGTGATGGTGCCCTGATGAAGAAAAATACGGCACCAGA-ACATGCCCGTGCCCAGCATG
651 TGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCA-ACACATGCCCGAGCCCAGCATG
*
13535200 TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
715 TGCTGCCGCAA-CC-C--T-C-G---G---TT---CT--G---G-A-TCCGTATGCTTAGACTGG
* * * ** *
13535265 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGATGCTCAGCCAACTAGAGG
758 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
* * * **
13535330 GGTGGGATGCGTAAGCCAGGGATCGACCGGGTTCCCCTCTACGTGCTGCCGATCCTGCT
823 GGCGGGATGCGCAAGCCGGGGATCGGTCGGG-TCCCC-CT-C-TG-TG-CGA---TGCT
* * ** * * *
13535389 GCCACAACCCTC-AGTCCGATCCAATCTTAGACTGGGAATCAACTCCATAAGCCTAAGCCAACCG
1 GCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * *
13535453 ACGAAAC-A-----------AGCGGGCGGGCACTACGCCGACCAAAGAGACAGGATGCGCAAGCC
65 ACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
* * * *
13535506 GTGAATTGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* * *
13535571 TTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCATGTGAAGTTTCATGGCAAGACCAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
13535636 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTAAAAATTTTTTTGG
260 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* ** * *
13535701 ATGGAGTTTTGGCAACAAACTTGGT-GACGTTACCCTTGTATTTTTGTTGGCATGCACAAAAAAA
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
13535765 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGA
390 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
13535830 CACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTC
455 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * *
13535895 TTGAGGTTTAATGAGGGATAGCGGGCCAATATAAGGG-CAAGTACCAACACCCATCACACATCAT
520 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
13535959 GTGCGCACACCCCCCCGGCCCCCCCGATCGCTGGAACCCCAAGGCCACCAGTTAGGTTCTCC-AG
585 GTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-
* ** * * * *
13536023 CGATGATCCGGTGATGGTGCCCTGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCA
648 CGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
* * * * *
13536088 TGTGCTACCACAACCCT-TGATCT-GATCCG-AT-CTTAGACTGGGAATGAACTCCGTACGCCTA
713 TGTGCTGCCGCAACCCTCGGTTCTGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
13536149 AGTCAACACACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGAGGCGAGATCCGTAAGCCGGG
778 AGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* *
13536214 GATCGGCCGGGTCCCCCTC--TGC-TTGCT
843 GATCGGTCGGGTCCCCCTCTGTGCGATGCT
* * * * * * *
13536241 GTCGTAACCCTCGGTCCAGTTTGATCTTAGACTGGGAATTAACTTCGTATGCCTAAGCCAACCGA
1 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
13536306 CGAAACGAGCGGACGGGCAGGTGGGCGGGCGGGGACTACGCCGGCCAGAGAGACGGGATTCGTAA
66 CGAAACGAGCGGGCGGGC----GGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
* * * * * *
13536371 ACCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACAACCTCATATTTTTACGTGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
13536436 TTTTTATGGCTTGTAAATTCATACAATGGT-CCTTCAAGCCTTCATGTGAAGTTTCATGGCAAGA
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
13536500 CCACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
256 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
13536565 T-TGAATGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCA-AA
321 TCGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
13536628 AAAAAGTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAATGTCTCCATT
385 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
13536693 TCAGACACTTTACTGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAA-GGGGTGTG
450 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
13536757 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACTAGCACCCATCGTAC
515 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
13536822 ATCATGTGCGCACACACCCCCCGGCCCCCTCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTC
580 ATCATGTGCGCACAC-CCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
** * * * *
13536887 TTTTG-CGATGCTCCGACGATGGTGCCCCGGA-GAAGAAAAATGTGACACCAACATATTCCCGAG
643 -TCCGACGATGCTCCGACGATGGTGCCCC-GATGAAGAAAAATGCGGCACCAACACATGCCCGAG
* * *
13536950 CCCTGCATGTGCTGCTGTAACCCTCGGTTCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
706 CCCAGCATGTGCTGCCGCAA-CC-C---TC-G---G---TT---CT--G---G-A-TCCGTATGC
*
13537015 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTC
749 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * *
13537080 GGCCAGAGGGGCGGGATTCGCAAGCCGAGGATTGGTTGGGTCCCCCTCTGCGTGCTGATGATCCT
814 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT--GTGC-GATG---CT
** * * *
13537145 GCTGCTGCAACCCTC-AGTTTGGTCTGTTCATAGACTGGGAATGAACTCCGTAAGCCTAAGCCAA
1 GC--C-GCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * **
13537209 CCGACGAAACAAGTGGGCGAGCAGGCGGGCGGGCACTATGTCGGTCAGAGAGACGGGATGCGCAA
62 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
* * ** * *
13537274 GCCGTGAATCGATAGGGTGGTTGGTGGGTTTAGGCATTTCTTCATATTTTTACGTGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * * *
13537339 TTTTTATGGTTTCTAAATTCATACAATGGTCCCTCAAGCCTTCATGTGAAGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
13537404 CACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTTGCGGTTCAAGATTTTTTTAAATTTTTT
257 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
** * *
13537469 C---AGGAGTTTTATCCGCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
322 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
13537531 AAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTC
387 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
13537596 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCATATGCTCTTTAAAGGGGTGTGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
13537661 TTCTCGAGGTTTTATAAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACAT
517 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * ** * * *
13537726 CATGTGTTCACACCCCCCCGACCCCCCCGATCATCGGAACCCCAATACCGTCGGTCAGGTTATCC
582 CATGTGCGCACACCCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** * * * *
13537791 GGCGATATTCCGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAACACATGCTCGAGCCCAG
646 GACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* * * * * ** *
13537856 CAAGTGCTGTCGTAACCCTTGG-TCCGG-TCCG-AT-CTTAGACTGGGAATGAACTTTGGATG-C
711 CATGTGCTGCCGCAACCCTCGGTTCTGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** * * * ** * * * ** * * * *
13537916 TTAG---A--CTGGGAATGAAC-TTTGGATGCTTAGACTGGGAATGA-AGTCCGTATGC-CTAAG
776 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG-CCGGCCA-GAGGGGCGGGATGCGC-AAG
** * *** *
13537973 TCATCCACGAAACGAGCGTGT-GGGTGCCGAGTC-G-GCCAGAGGGGCT
838 -----C-CG--GGGATCG-GTCGGGT-CCCCCTCTGTG-C-GA--TGCT
* * ** * *
13538019 GGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGATGATCCTGCTGCCGCAACCC
1 -G--CCGCAA-CC------C--TC-GAT-CCGGTCTG-AT-CTTA-GA--CTG--G--G-AA---
** * * * * * * * * * *
13538084 TCAGTTCGGTCTGTTCATAGACTGGGAATG--AACTCCGTATGCCTAAGCCAACCGACGAAATGA
39 T--GAAC--TCCG-T-AT-GCCT---AA-GCCAA--CCG-A---CGAAACGAGCGGGCG---GGC
* * * * *
13538147 GCGGGCGAGCGGGTGGGCGGGCACTGCGCCGGCCAGAGAGACGGGATGCGCAA-CTGTGGATCGA
84 GGGCG----------GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
13538211 TAGGGTGGTAGGTGGGTTTAGGCTCATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTT
139 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
* *
13538276 GTAAATTCATACAATGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCT
204 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
13538341 ATTTTTCATGATTTTTAAAACTTTTTGA-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
269 ATTTTTCATGATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
13538405 TTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
333 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
13538470 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAAACACTTTAA
398 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
13538534 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTT
463 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
13538599 TGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGTACCCATCGCACATCATGTGTGCAC
528 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
13538664 ACCCCCCCGGTCCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC
593 ACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* ** * * * *
13538729 GACGATGGTGCCCCGACGAAGAAAAATATGGCACCAACACATGCCTGAGCCTAGCATGTGCTTCT
657 GACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCC
* * *
13538794 GTAACCATCGGTCTGGTCCGATCATAGTGTGAGAATGAACTCCGTATGCTTAGACTCGGAATTAA
722 GCAACC--C--TC-GGT----TC------T--G---G-A-TCCGTATGCTTAGACTGGGAATGAA
* * * * * *
13538859 CTCCATATGCCAAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGTGTGA
765 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
* *
13538924 TGCGCAAGCCGGGGATAGGTCGGGTCCCCCTCTGTGTGCTACCGATCCTACT
830 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC--TGTG----CGA---TGCT
* * * * *
13538976 GTCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGA
1 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * *
13539041 TGAAACGA----GCGTGCGGGCGGGCGGGCACTATGCCGGCCAAAAAGACGGGATGCGCAAGCCG
66 CGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
* * * * * *
13539102 TGGATCGATAGGGTGGTAGGTAGGATTAGGAATATCTTCATATTTTTTCATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
13539167 TATGGCTTCTAAATTCATACAAAGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
13539232 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTTGGA
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* ** * * *
13539297 TGGAGTTTTGGCAACAAACTTGGT-GACGTGACCCTTATATTTTTGTTGGCATGCACAATAAAAT
326 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
13539361 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
391 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
13539426 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCT
456 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
13539491 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATTGCACATCATG
521 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
13539556 TGCGCACAGCCCCCCCAGCCCCCCCGATCGGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
586 TGCGCACA-CCCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * *
13539621 GATGCTCTTG-CGATGGTGCCCCGGA-GAAGAAAAATGCGGCTCCAACACATGCTCGAGCCCAGC
649 GATGCTC-CGACGATGGTGCCCC-GATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
* * * * *
13539684 ATGTGTTGCCGTAACCCTC-ATTC-CGATCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCCT
712 ATGTGCTGCCGCAACCCTCGGTTCTGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** *
13539745 AAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGGCCAGAGGGACAAGATGCGCAAGTCGG
777 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
*
13539810 GGATCGG-CTGGGTCCCCCTCTACGTGTTGTTGATCCTGCT
842 GGATCGGTC-GGGT-CCCC-CT-C-TG-TG-CGA---TGCT
* * * * * * * * *
13539850 GCCACAACCTTCG-GCTCGATTTGATATTAGACTGGGAATGAACTCCGTATGCATAAACCAACCA
1 GCCGCAACCCTCGATC-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * *
13539914 ATGAAACGAGCGGGCGGGCGGACGGGTGGTCACTACGCCGGCAAGAGAGACGGGATGCGCAAGTC
65 ACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
*
13539979 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* *
13540044 TTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
13540109 TCGTTTTCTATTTTACATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC--
260 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
** * * *
13540172 -AGGAGTTTTATCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAT
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
13540236 TTCAGCT-AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
390 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
13540300 CACTTTAATGGCTACTGGCAGC-AACCTGGAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTG
455 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
13540364 TGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCAT
520 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** * * * *
13540429 GTGCGCACACCCCCCCAGCCCCCTAATCACCGAAACCCCAATGTC-ACGGTCAGG---T------
585 GTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * ** * * *
13540484 -T-CTCCGACGATGGTGCCCGGTTGAAGAAAAATGTAGCACCAACACATTCCAGAGCCTAGCATG
650 ATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* *
13540547 TGCTACCACAACCCTCAGTATGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
715 TGCTGCCGCAACCCTC------G---G---TT---CT--G---G-A-TCCGTATGCTTAGACTGG
* * * * *
13540612 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGC
758 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
* * * *
13540677 AGCGGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCT
823 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCC-CT-C-TG-TG-CGATGCT
* * * * *
13540733 GTCGTCGCAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
1 G-C--CGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
13540798 TGACGAAATGAGTGGGTGGGCGGGTGGGCGGGCACTACGTC-AGCCAAAGAGACGGGATGCGCAA
63 CGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCAA
* * *
13540862 GCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGCATGCCCATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * * * *
13540927 TTTTTATGGCTTTTAAATTTATAAAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
13540992 GACTCGTTTTCTATTTTTCGTGATTTTT-AAACTTTTTGCGGTTCAAGATTTTTT-AAATTTTCT
257 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
13541055 CCGAAGGAG-TTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
322 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
13541119 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
387 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
13541184 AGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
13541249 TTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
517 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
13541314 CATGTGCGCACA--CCCCCGGCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCG
582 CATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** *
13541377 GCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACACGCCCGAGCCCAGC
647 ACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
13541442 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGTGTGGGAATGAACTCCGTATGCTTAGAC
712 ATGTGCTGCCGCAA-CC-C--T-CGGT----TC------T--G---G-A-TCCGTATGCTTAGAC
* * * * * *
13541507 TGGGAATTAACTCCGTATGCCTAAGTCAAGCCACGGAACGAGCGTACGGGTGCTCAGGCAGCCAG
755 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * * * *
13541572 AGAGGCGAGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGTGTACTGCCGATCCTACT
820 AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC--TG---TG-CGA---TGCT
* * *
13541634 GCTGCAACCCTCGATCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
1 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * * *
13541699 CGAAACGA----GCAGGTGGGCGGGCGGGCACTATGTCGGCCAAAGAGACGGGATGTGCAAGCCA
66 CGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
* * * ***
13541760 TGGATCGATAGGGTGGTAGGTAGGTTTAGGCATATCTACATATTTCTGTGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
13541825 TATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
13541890 CGTTTTCTAATTTTCATGA-TTTCGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGA
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * ** * * ** *
13541954 TGGTGTTTTGGCAACAAACTTTGTAGTCGTGATCCTCATACTTTTGTTGGCATGCACAAAAAAAT
326 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
13542019 TCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAT
391 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
13542084 ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTGTTGAAGGGGGTGTGAGTTCT
456 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
13542149 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTA-CAGCACGCATCGCACATCATG
521 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * **
13542213 TGCGCACAGCCCGCCCAGCCCCACCGATCGTC-GATACCCCAATGCCATCGGTCAGGTTCTCCGA
586 TGCGCACA-CCCCCCCGGCCCC-CCGATCGCCGGA-ACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * *
13542277 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCA
648 CGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
* *
13542342 TGTGCTGCCGCAACCCTCGG-ACCGG-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTA
713 TGTGCTGCCGCAACCCTCGGTTCTGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * **
13542403 ATTCAACCCACAAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGG
778 AGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
*
13542468 GATCGG-CTGGGTCCCCAC-CTATG-G--GCT
843 GATCGGTC-GGGTCCCC-CTCTGTGCGATGCT
* * * *
13542495 ---G-----C-CGAT----T-TGATTTTATACTGGGAATGAACTCCGTATGCCCAAACCAACCGA
1 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
13542546 TGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGCCGACGAGAGAGACCGGATGCGCAAGCCG
66 CGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
* *
13542611 TGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
13542676 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
13542741 CGTTTTCTATATTTCATGA-TTTTGAAAACTTTTTGCGGTTCG-GAATTTTTTAAAATTTTTTTG
261 CGTTTTCTATTTTTCATGATTTTTG-AAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTCG
* * ** * *
13542804 GAAGGAGTTTTGGCCCCAAACTTGGTGGATGTGATCGATGTAATTTTT-TTGGTATGCATAAAAA
324 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAA
* * * *
13542868 AATTCAACTAAAAACTCTAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGGGTCCCCATTTCA
388 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
13542933 GACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGT
453 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
13542998 TCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACGAGCACCCATCGTACCTC
518 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * *
13543063 ATGTGCGCACACCCCCCCAACACCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCCCCG
583 ATGTGCGCACACCCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
13543128 ACGATGCTCCGATGATGGTGCCCTGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGC
647 ACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
*
13543193 ATGTGGTGCCGCAACCCTCAGTCCGATCCGATCTTAGAATGGGAATGAACTCGGTATGCTTAGAC
712 ATGTGCTGCCGCAACCCTC-G---G-T----TC------T-GG-AT---C-C-GTATGCTTAGAC
* * * *
13543258 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCAGGCCAG
755 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * *
13543323 AGGGGCGGGATGCGCAAGCCTGGGATCAG-CTGGGTCCCCCTCTGCGTGCTGCCGATCCT
820 AGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGT-CCCC-CT-C-TG-TG-CGATGCT
* ** *
13543382 GCTAC-CATAACCCTCGGTCTAGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 GC--CGC--AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13543446 CCGACGAAACGAGCGGACGGGCGGGCAGGCGGGCACTACG-CTAGCCCGAGAGATGGGATGCGCA
62 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCA
* *
13543510 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
13543575 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
13543640 CGACTCGTTTTCTATTTTTCGTGATTTTTGTAACTTTTTTCGGTTTGGGATTTTTTTAAATTTTT
256 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
** *
13543705 TCGGAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
321 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
13543770 AAAATTCAGCTAAAAACTCGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTT
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
13543835 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
13543900 GTTCTCGAGGTTTGATGAGGAACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
516 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
13543965 TCATGTGCGCGCA-CCCCCCGGCCCCTCGATCACCGGAACCCTAATGCCGTCGGTCAGGTTCTCC
581 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * *
13544029 -AGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGACACC-ACACATGCCCCAACCCA
646 GA-CGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
*
13544092 GCATGTGCTGCCGCAACCCTCGG-TCTGG-TCCG-AT-CTTAGACTGGGAATGAACTCCGTACGC
710 GCATGTGCTGCCGCAACCCTCGGTTCTGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
13544153 CTAAGTGAACCCACGAAACGACCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCC
775 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * *
13544218 AGGGATCGG-CAGGGTGCCCCTCTACGTACTGCTGATCCT
840 GGGGATCGGTC-GGGT-CCCC-CT-C-T-GTGC-GATGCT
*
13544257 GCTACTGCAACCCTC-AGTCTGGTAC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 GC--C-GCAACCCTCGA-TCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
13544320 ACCGACGAAACGA-----------AG-GGGCGGGCACTACGCC-AGCTAGAGAGACGGGATGCGC
61 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGC
* *
13544372 AAGTCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTTA-ATGCCAATG
125 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-TACATGCCAATG
* *
13544436 CCACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAA
189 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
13544501 GACGACTCATTTTCTATATTTT-ATGA-TTTTGAAAACTTTTTACGGTTCG-GAATTTTTAAAAA
254 GACGACTCGTTTTCTAT-TTTTCATGATTTTTG-AAACTTTTTACGGTTCGAG-ATTTTTTAAAA
* * * * *
13544563 TTTTTTTGGATGGAGTTTTGGCCCCAAACCTGGTAGATGTGATCCTTGTATTTTTGTTGGTATGC
316 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
13544628 ACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCC
381 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
13544693 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGG
446 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
13544757 TGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATC
511 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
13544822 GCACATCATGTGCGTACA-CCCCCCAGCACCCCGATCACCGGAACCCCAATGCCGCCGGTTAGGT
576 GCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
* * *
13544886 TCCCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAG
641 TCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAG
*
13544951 CCCAGCATGTGGTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCAGTATGC
706 CCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G---TT---CT-GG-AT---C-C-GTATGC
* * * * * *
13545016 TTACACTGGGAATAAACTTCGTATGCCTAAGTCAACAACCA--AAACGAGCGTACGGGCGTTCAG
749 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC--CCACGAAACGAGCGTGCGGGTGCTCAG
** *
13545079 CCGGCCAGAGGGGCGGGATGCGCAAGCTTGGGATCGGTTGGGTCCCCCTCTACGTGCTGCCGATC
812 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCC-CT-C-TG-TG-CGA--
13545144 CTGCT
869 -TGCT
* * * * * *
13545149 ACCGCAACCCTCAATCCAGTTTGACCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
1 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
13545214 CGAAACAAGCGGACGGGCGGGCGGGCGGGCACGCACTACG-CTAGCCCGAGAGACGGGATGCGCA
66 CGAAACGAGCGGGCGGGCGGGCGGGC-GG---GCACTACGCCGA-CCAGAGAGACGGGATGCGCA
*
13545278 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
13545343 AGTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
13545408 CGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
256 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * **
13545473 TCAGAAGGATTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
321 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
13545538 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
13545603 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
13545668 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
516 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
13545733 TCATGTGCGCACACCCACCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTC
581 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
13545798 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCTGAGCCCAG
646 GACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* *
13545863 CATGTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGCCTGGGAATGAACTCCGTATGCTTACA
711 CATGTGCTGCCGCAA-CC-C--TC--G---G---TT---CT--G---G-A-TCCGTATGCTTAGA
* * * *
13545928 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGTCGGCCA
754 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * * * *
13545993 AAGGGGTGGGATGCGCAAGAC-GGGATCGATCGAGTCCCCCTCTGCGTGCTGCTGATCCAGCT
819 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCC-CT-C-TG-TGC-GAT---GCT
** * *
13546055 GCTACAA-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
1 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
13546119 TGAAACGA--------GCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
66 CGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
*
13546176 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
13546241 TATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * **
13546306 CGTTTTCTATTTTTAACGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTT-AAATTTTTTCAA
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGG
* *
13546369 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTTGGCATGCAGAAAAAAA
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
13546434 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCAATTT-AG
390 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAG
* *
13546498 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTT
454 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
13546563 CTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCA
519 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
13546628 TGTGCGCACAGCCCCCCCGGCCCCCCCGATTGCCGAAACCCCAACGTCGTCGGTCAGGTTCTCCG
584 TGTGCGCACA-CCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * * * *
13546693 ACGATGCTCCAACGATGGTGCCCCGACGAAAAAAAATGCAGCACCAGCGCATGCCTGAGCCCAAC
647 ACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
*
13546758 ATGTGCTGCCGCAACCCTTGGTCCGGTTCGATCTTAGACTTTGAATGAACTCCATATGCTTAGAC
712 ATGTGCTGCCGCAACCC----T-C-G---G---TT---C--TG---G-A-TCCGTATGCTTAGAC
* * * * *
13546823 TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGTA-CGTACGGGTGCTCAACCGACTA
755 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-AGCGTGCGGGTGCTCAGCCGGCCA
* * * * * *
13546887 GAGGGGCGAGATGCGCAAGTCGGGGATCGGCCGGGTCCCTCCCTGTGTGCTACCAATCCTACT
819 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CC-CCCTCTGTG----CGA---TGCT
* * * * *
13546950 GCTGCAACCCTCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACAG
1 GCCGCAACCCTCGATCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
*
13547014 ACGAAACGAGTGGGCGGGC
65 ACGAAACGAGCGGGCGGGC
13547033 ACTACGTTGG
Statistics
Matches: 16217, Mismatches: 1817, Indels: 1395
0.83 0.09 0.07
Matches are distributed among these distances:
847 46 0.00
848 1 0.00
851 185 0.01
852 422 0.03
853 38 0.00
855 1 0.00
856 5 0.00
857 3 0.00
858 3 0.00
859 3 0.00
860 69 0.00
861 402 0.02
862 192 0.01
863 407 0.03
864 104 0.01
865 8 0.00
866 5 0.00
867 56 0.00
868 512 0.03
869 943 0.06
870 44 0.00
871 36 0.00
872 473 0.03
873 334 0.02
874 294 0.02
875 328 0.02
876 338 0.02
877 33 0.00
878 332 0.02
879 469 0.03
880 12 0.00
881 5 0.00
882 6 0.00
883 76 0.00
884 18 0.00
885 40 0.00
886 446 0.03
887 98 0.01
888 119 0.01
889 209 0.01
890 1121 0.07
891 259 0.02
892 279 0.02
893 235 0.01
894 528 0.03
895 459 0.03
896 701 0.04
897 397 0.02
898 469 0.03
899 461 0.03
900 178 0.01
901 271 0.02
902 647 0.04
903 303 0.02
904 841 0.05
905 696 0.04
906 200 0.01
907 293 0.02
908 13 0.00
909 13 0.00
910 6 0.00
911 7 0.00
912 1 0.00
913 8 0.00
914 1 0.00
915 4 0.00
916 3 0.00
918 1 0.00
919 4 0.00
920 2 0.00
921 2 0.00
923 3 0.00
924 2 0.00
925 171 0.01
926 36 0.00
927 252 0.02
928 111 0.01
929 1 0.00
930 1 0.00
931 1 0.00
932 2 0.00
933 2 0.00
934 1 0.00
936 1 0.00
937 2 0.00
938 3 0.00
940 2 0.00
941 3 0.00
942 1 0.00
943 4 0.00
944 3 0.00
945 3 0.00
947 1 0.00
948 1 0.00
950 6 0.00
951 11 0.00
952 2 0.00
953 25 0.00
954 10 0.00
956 3 0.00
957 5 0.00
958 2 0.00
959 18 0.00
960 10 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
TGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTTCTGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
CGGTCGGGTCCCCCTCTGTGCGATGCT
Found at i:13530825 original size:26 final size:26
Alignment explanation
Indices: 13530774--13530826 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13530764 CTGGTCCGAT
* *
13530774 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13530800 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13530826 C
1 C
13530827 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13531709 original size:26 final size:26
Alignment explanation
Indices: 13531680--13531733 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
13531670 AATTCGATCT
*
13531680 TAGACTGGGAATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
13531706 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
13531732 TA
1 TA
13531734 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:13532590 original size:26 final size:26
Alignment explanation
Indices: 13532539--13532591 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13532529 CCAATATGAT
* **
13532539 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13532565 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13532591 C
1 C
13532592 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13533480 original size:26 final size:26
Alignment explanation
Indices: 13533444--13533496 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13533434 CCAGTTCGAT
13533444 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13533470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13533496 C
1 C
13533497 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13535127 original size:890 final size:892
Alignment explanation
Indices: 13532333--13559137 Score: 21510
Period size: 904 Copynumber: 29.7 Consensus size: 892
13532323 ATGCTCTTTA
* * * *
13532333 AGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTACGCATACCCCCACCTG
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCAG
* * * ** *** * *** *
13532398 ACCCCTCGATCGTCGG-ACCCTGATGCCATTGGTCAAGTTCTCCAATGATGCTCCGACGATGGTG
64 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* * *
13532462 CCCCGATGAAGAAAAATGCGGCACCAACACATGTCCGAGCCCAGCATGTGCTGCAGCAACCCTCG
129 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
** ** * * *
13532527 GTCCAATATGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGC
194 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
13532592 GTAAGTCAACACACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCAGGATCCGCAAGCT
259 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * ** * * **
13532657 GGGGATCGGTCGGGTCCCCCTCTGCTTGCTGTTGATCTTGCTGTCGCAACCCTCGGTCCAGTCTG
324 GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTG
* * *
13532722 ATCTTAGACTGGGAATGAACTTCGGATGCCTAAGCCAACCGACGAAATGAGTGGGCGGGCGGGCG
389 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------GGCGGGCG
* * * * * *
13532787 GGCGGGGACTACGTCGGCCAGGGAGACGGGATGCACAAACTGTGGATCGATAGGGTGGTAGTTGG
447 GGC----ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * * *
13532852 GTTTATGTACAACTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
508 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
13532917 GGT-CCTTCAAGCCTTCATGTGAAGTTTCATGGCAAGACCACTAGTTTTCTATTTTTCACGATTT
573 GGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
*
13532981 TCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTT-GAATGGAGTTTTGGCCCCAAACTT
637 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAA-GGAGTTTTGGCCCCAAACTT
* * * * * *
13533045 CGTAGACATGATCCTTGTATTTTTTTTGGTATGCACAAAAAAAGTT-AGCTAAAAACCCGAAGGG
701 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTG
* *
13533109 TACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCTG
765 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
13533174 CAAACTTGTAAAATCTAAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
830 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
13533236 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGG
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCAG
* * * * * *
13533301 CCCCTCTGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCAGGGGTTGCTCCGGCGATGGT
64 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GGCGATGCTCCGGCGATGGT
* * **
13533366 GCCCCAGA-GAAGAAAAATACGGCACCAACATATGCCCGAGCAAAGCATGTGCTGCCGCAACCCT
128 GCCCC-GACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* *
13533430 CGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
192 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
13533495 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
257 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * ** * ** *
13533560 CTGGGGATCGGTCGGGTCCCCATCTATGTGCTGTCGATCCTGCTGGTGCAACCCTCGGTCCGGTC
322 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTC
* * * *
13533625 TGATCTTAGACTAGGAATGAACTCCGTATGCCCAAACCAACCGACGAAATGAGCGGGCGGGCGGG
387 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGCGGGCGGG
* * * ** *
13533690 CACTACACCGGCCAGAGAGACAGGATGTGCAAATCGTGGATCGATAGGGTGGTAGGTGCGTTTAG
449 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ***
13533755 GCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
514 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
13533820 TTAAGCCTTCACGTGAATTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAAC
579 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * *
13533885 TTTTTACGGTTCAAGATTTTTTAAAACTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGATG
644 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
13533950 TGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATT
709 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
13534015 TTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGT
774 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
13534080 AAAATCTCAAATGCTCTTTAACGGGGTGTAAGTTCTCGAGGTTTGATGAGGGAT
839 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
13534134 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGCGCGCGCACCCCCCGGCC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCC
* * * * *
13534199 CCCCCGATCGCTGGAACCCCAATGCCACCAGTTAGGTTCTCCGGCGATGATCCGGCGATGGTGCC
66 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* * * * * * *
13534264 CTGATGAAGAAAAATACGGCACCAGCGCATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGAT
131 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
13534329 CCGGTCCGATCGTAGACTGGGAATGAACAT-CGTATGCTTAGACTGGGAATGAGCTCCGTATGTC
196 CCGGTCCGATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
13534393 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACTAGAGGGGTGGGATGCGCAAGCCG
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* ** * * *
13534458 GGGTTCAACCGGGTCCCCCTCTACGCGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGA
325 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA
* * * *
13534523 TCTTAGATTGGGAATCAACTCCGTAAGCCTAAGCCAACCGACGAAACGA-GCGGGCGGGTACTAC
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCACTAC
* * * *
13534587 GCCGACCAAAGAGACAGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
455 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
13534652 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGC
520 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * **
13534717 CTTCATGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA
585 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* * * ** * *
13534782 CGGTTCGAGATTTGTTAAAATTTTTTTGGATGGAGTTTGGGCAACAAACTTGGT-GATGTGACCC
650 CGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
13534846 TTGTATTTTTGTTGGCATGCACAAAAAAATTCATCTAAAAATTCAAAGTGTACAAGATTTTGTGA
715 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
13534911 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATC
780 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
13534976 TCAAATACTCTTGAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
845 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
13535024 AGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATCACACATCACGTGCGCACACCCCCCAGCC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCC
* * * * * *
13535089 CCCCCGATCGCTGGAACCCCAATGCCACCGGTTAGGTTCTCCGGCAATGATCCGGTGATGGTGCC
66 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* * * * * *
13535154 CTGATGAAGAAAAATACGGCACCAGA-ACATGCCCGTGCCCAGCATGTGCTGCCACAACCCTCGA
131 CCGACGAAGAAAAATGCGGCACCA-ACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
13535218 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCC
195 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * ** * * * *
13535283 TAAGTCAACCCACGAAACGAGTGTGCGGATGCTCAGCCAACTAGAGGGGTGGGATGCGTAAGCCA
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * * **
13535348 GGGATCGACCGGGTTCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATCCAA
325 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA
* * * *
13535413 TCTTAGACTGGGAATCAACTCCATAAGCCTAAGCCAACCGACGAAAC-AAGCGGGCGGGCACTAC
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCACTAC
* * * * * *
13535477 GCCGACCAAAGAGACAGGATGCGCAAGCCGTGAATTGATAGGGTGGTAGGTGGGTTTAGGTACAT
455 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
13535542 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGC
520 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
13535607 CTTCATGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
585 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* * ** * *
13535672 CGGTTCGAGATTTTTAAAAATTTTTTTGGATGGAGTTTTGGCAACAAACTTGGT-GACGTTACCC
650 CGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
13535736 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
715 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
13535801 TCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATC
780 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
13535866 TCAAATGCTCTTGAAGGGGGTGTGAGTTCTTGAGGTTTAATGAGGGAT
845 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
13535914 AGCGGGCCAATATAAGGG-CAAGTACCAACACCCATCACACATCATGTGCGCACACCCCCCCGGC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGC
* * * * * * * *
13535978 CCCCCCGATCGCTGGAACCCCAAGGCCACCAGTTAGGTTCTCCAGCGATGATCCGGTGATGGTGC
65 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * * * *
13536043 CCTGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAA-CC-C--
130 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
*
13536104 T----T--GA---T---C------TG-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTACGCC
195 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
13536147 TAAGTCAACACACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGAGGCGAGATCCGTAAGCCG
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* ** *
13536212 GGGATCGGCCGGGTCCCCCTCTGC-T--T---G---CTG-T--CGTAACCCTCGGTCCAGTTTGA
325 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA
* *
13536265 TCTTAGACTGGGAATTAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCAGGTGG
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C-GA--GGC----GG
* * *
13536330 GCGGGCGGGGACTACGCCGGCCAGAGAGACGGGATTCGTAAACCGTGGATCGATAGGGTGGTAGG
444 GCGGGC----ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * *
13536395 TGCGTTTAGGCACAACCTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
505 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
13536460 AATGGT-CCTTCAAGCCTTCATGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCACGA
570 AATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
13536524 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTT-GAATGGAGTTTTGGCCCCAAA
634 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAA-GGAGTTTTGGCCCCAAA
* * *
13536588 CTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAAGTCAGCTAAAAACTCGAAG
698 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
13536652 GGTACAAGATTTTGTGACCATTTGAAAAAAATGTCTCCATTTCAGACACTTTACTGGCTACTGGC
763 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
13536717 AGCAAACTTGTAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
828 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
13536781 AGGGGGCCAATATAAGGGCCAGGTACTAGCACCCATCGTACATCATGTGCGCACACACCCCCCGG
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCAG
* * * *** *
13536846 CCCCCTCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTTTTGCGATGCTCCGACGATGGTG
64 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* * * * * * *
13536911 CCCCGGA-GAAGAAAAATGTGACACCAACATATTCCCGAGCCCTGCATGTGCTGCTGTAACCCTC
129 CCCC-GACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
13536975 GGTTCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
193 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
13537040 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATTCGCAAGC
258 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * ** ** * * *
13537105 CGAGGATTGGTTGGGTCCCCCTCTGCGTGCTGATGATCCTGCTGCTGCAACCCTCAGTTTGGTCT
323 CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT
* * *
13537170 GTTCATAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACAAGTGGGCGAGCAGGC
388 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-----C--G-AGGC
* * * * *
13537235 GGGCGGGCACTATGTCGGTCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTTGGTG
442 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** * * * *
13537300 GGTTTAGGCATTTCTTCATATTTTTACGTGCCAATGCCATTTTTATGGTTTCTAAATTCATACAA
507 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
13537365 TGGTCCCTCAAGCCTTCATGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCATGATTT
572 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * * * * ** *
13537430 TCGAAACATTTTGCGGTTCAAGATTTTTTTAAA-TTTTTT--CAGGAGTTTTATCCGCAAACTTG
637 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
* *
13537492 GCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAGTGTA
702 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
13537557 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCA
767 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * * *
13537622 AACCTGTAAAACCTCATATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTTATAAGGGAT
832 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* ** *
13537683 AGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGTTCACACCCCCCCGAC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAG-C
** * * * **
13537748 CCCCCCGATCATCGGAACCCCAATACCGTCGGTCAGGTTATCCGGCGATATTCCGGCGATGGTGC
65 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
** * * * * * *
13537813 CCCGGTGAAGAAAAATGTGGCACCAACACATGCTCGAGCCCAGCAAGTGCTGTCGTAACCCTTGG
130 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
13537878 TCCGGTCCGATCTTAGACTGGGAATGAACTTTGGATGCTTAGACTGGGAATGAACTTTGGATGCT
195 TCCGGTCCGATCTTAGACTGGGAATGAAC------T-C-----C-------G-----T--ATGCT
* * * *
13537943 TAGACTGGGAATGAAGTCCGTATGCCTAAGTC-ATCCACGAAACGAGCGTGTGGGTGC-CGAGTC
234 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC-AGCC
* * * **
13538006 GGCCAGAGGGGCTGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGATGATCCT
298 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * *
13538071 GCTGCCGCAACCCTCAGT-TCGGTCTGTTCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
363 GCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
13538135 CCGACGAAATGAGCGGGCGAGCGGGTGGGCGGGCACTGCGCCGGCCAGAGAGACGGGATGCGCAA
427 CCGACG-AA--A-----CGA---GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
13538200 -CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCTTTATATTTCTGCATGCCAATGCCA
481 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
13538264 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAGAC
546 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13538329 GGCTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGA-GGTTCGGGATTTTTTAAAATTTTT
611 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTT
* * *
13538393 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAA
675 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
13538458 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTT
740 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
13538522 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGA
805 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
13538587 GTTCTCGAGGTTTGATGAGGGAT
870 GTTCTCGAGGTTTGATGAGGGAT
* * * * *
13538610 AGGGGGCCAATATAAAGGCCAAGTACCAGTACCCATCGCACATCATGTGTGCACACCCCCCCGGT
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGC
* *
13538675 CCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
65 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
** * * * * * *
13538740 CCCGACGAAGAAAAATATGGCACCAACACATGCCTGAGCCTAGCATGTGCTTCTGTAACCATCGG
130 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * ** * * * *
13538805 TCTGGTCCGATCATAGTGTGAGAATGAACTCCGTATGCTTAGACTCGGAATTAACTCCATATGCC
195 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
13538870 AAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGTGTGATGCGCAAGCCG
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * *
13538935 GGGATAGGTCGGGTCCCCCTCTGTGTGCTACCGATCCTACTGTCGCAACCCTCGGT-TCGGTCCG
325 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTG
* *
13538999 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGTGCGGGCGGGCG
389 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------GGCGGGCG
* * * * *
13539064 GGCACTATGCCGGCCAAAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGATT
447 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * * * *
13539129 AGGAATATCTTCATATTTTTTCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAAAGGTC
512 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
13539194 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
577 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * **
13539259 ACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTTGGATGGAGTTTTGGCAACAAACTTGGT-GA
642 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
13539323 CGTGACCCTTATATTTTTGTTGGCATGCACAATAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
707 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
13539388 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
772 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
13539453 GTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
837 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
13539509 AGGGGGCCAATATAAGGGCCAAGTACCAGCACACATTGCACATCATGTGCGCACAGCCCCCCCAG
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCAG
* * **
13539574 CCCCCCCGATCGGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTTGCGATGGTG
64 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* * * *
13539639 CCCCGGA-GAAGAAAAATGCGGCTCCAACACATGCTCGAGCCCAGCATGTGTTGCCGTAA----C
129 CCCC-GACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
*
13539699 ---CC--T-C-A--TT---C--CG-AT---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATG
193 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * ** *
13539742 CCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGGCCAGAGGGACAAGATGCGCAAGT
258 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * ** * * * *
13539807 CGGGGATCGGCTGGGTCCCCCTCTACGTGTTGTTGATCCTGCTGCCACAACCTTCGG-CTCGATT
323 CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTC
* * * * *
13539871 TGATATTAGACTGGGAATGAACTCCGTATGCATAAACCAACCAATGAAACGAGCGGGCGGGCGGA
387 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGC--G-GG-
* *
13539936 CGGGTGGTCACTACGCCGGCAAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGT
445 C--G-GG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
13540001 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
506 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
13540066 ATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTACATGATT
571 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* **
13540131 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTT--CAGGAGTTTTATCCCCAAACTT
636 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
* * * *
13540193 GGTAGACGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAATTTCAGCT-AAAACTCAAAGTGT
701 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
13540257 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
766 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
13540322 -AACCTGGAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTGGAGGTTTGATGAGGGAT
831 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
13540383 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCAG-
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGC
** * * * *
13540447 CCCCCTAATCACCGAAACCCCAATGTC-ACGGTCAGGTTCT-C--CGA--------CGATGGTGC
65 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* ** ** * * * * * *
13540500 CCGGTTGAAGAAAAATGTAGCACCAACACATTCCAGAGCCTAGCATGTGCTACCACAACCCTCAG
130 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
** ** *
13540565 TATGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCC
195 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * ** *
13540630 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGCAGCGGGATGCGTAAGCCG
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * *
13540695 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG-TCGTCGCAACCCTTGGTCTGATCTG
325 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-GCCGCAACCCTCGGTCTGGTCTG
* * *
13540759 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGACGAAATGAGTGGGTGGGCGGGTG
389 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------GGC----G
* * *
13540824 GGCGGGCACTACGTCAGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
443 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * * * *
13540889 GCTTAGGCACATCTTCATATTTCTGCATGCCCATGCCATTTTTATGGCTTTTAAATTTATAAAAT
508 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
13540954 GCTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGTGATTTT
573 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * ** *
13541019 T-AAACTTTTTGCGGTTCAAGATTTTTT-AAATTTTCTCCGAAGGAG-TTTAGCCCCAAACTTGG
638 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
13541081 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
703 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
13541146 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAA
768 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
13541211 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGAT
833 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
13541271 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-GGC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCC
* * *
13541334 CCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
66 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* *
13541399 CCGACAAAGAAAAATGCGGCACCAACACACGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
131 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
** *
13541464 CCGGTCCGATCTTAGTGTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCT
196 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * *
13541529 AAGTCAAGCCACGGAACGAGCGTACGGGTGCTCAGGCAGCCAGAGAGGCGAGATGCGCAAGCTGG
261 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
** * * * * * *
13541594 GGATCGATCGGGTCCCCCTCTGTGTACTGCCGATCCTACTGCTGCAACCCTCGATCCT-GTCCGA
326 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT-CTGGTCTGA
13541658 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGTGGGCGGGCGG
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A----GGCGGGCGG
* * * * * *
13541723 GCACTATGTCGGCCAAAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTAGGTTTA
448 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *** *
13541788 GGCATATCTACATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCC
513 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
13541853 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAATTTTCATGA-TTTCGAAA
578 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * * ** * *
13541917 CTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGATGGTGTTTTGGCAACAAACTTTGTAGTC
643 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
** * *
13541982 GTGATCCTCATACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGAT
708 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
13542047 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACTTG
773 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
13542112 TAAAATCTCAAATGCTGTTGAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
838 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
13542167 AGGGGGCCAATATAAGGTCCAAGTA-CAGCACGCATCGCACATCATGTGCGCACAGCCCGCCCAG
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCAG
* * ** *
13542231 CCCCACCGATCGTC-GATACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGT
64 CCCCCCCGATCGCCGGA-ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT
*
13542295 GCCCCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCGCAA-CC-C
128 GCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
13542358 --T-C-G---GA-C-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATG
193 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * **
13542399 CCTAATTCAACCCACAAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGC
258 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * *
13542464 CGGGGATCGGCTGGGT-CCCCAC--C-T-ATG--G-----GCTGCCG--A---------T--T-T
323 CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT
* * * * *
13542503 GATTTTATACTGGGAATGAACTCCGTATGCCCAAACCAACCGATGAAACGAGCGGGCGGGCGGGC
388 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------GGCGGGC
* * *
13542568 GGGCGAGCACTACGCCGACGAGAGAGACCGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
446 --G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
13542633 TGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
507 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
13542698 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATATTTCATGA-TT
572 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
*
13542762 TTGAAAACTTTTTGCGGTTCG-GAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
637 TTG-AAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
* * ** * * * *
13542826 TGGTGGATGTGATCGATGTAATTTTT-TTGGTATGCATAAAAAAATTCAACTAAAAACTCTAAGT
700 TGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
13542890 GTACAAGATTTTGTGAACATTTGAAAAAAGGGTCCCCATTTCAGACACTTTAATAGCTACTGGCA
764 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
13542955 GCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGAT
829 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * * *
13543019 AGGGGGCCAATATAAGGGCCATGTACGAGCACCCATCGTACCTCATGTGCGCACACCCCCCCAAC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGC
* * * * **
13543084 ACCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCCCCGACGATGCTCCGATGATGGTGC
65 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * *
13543149 CCTGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCATGTGGTGCCGCAACCCTCAG
130 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
13543214 TCCGATCCGATCTTAGAATGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTATGCC
195 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
13543279 TAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCT
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * ** *
13543344 GGGATCAGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCATAACCCTCGGTCTAGTCTGA
325 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA
*
13543409 CCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCAG
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C-GA--GGC--G--G
** * *
13543474 GCGGGCACTACGCTAGCCCGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
444 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
13543539 TTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
509 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
13543604 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGTGATTTTT
574 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * * * **
13543669 GTAACTTTTTTCGGTTTGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTCACCCCAAACTTGGT
639 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
*
13543734 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
704 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
13543799 CGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAA
769 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
13543864 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAAC
834 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
13543923 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCC-GGC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCC
* * * * *
13543987 CCCTCGATCACCGGAACCCTAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCC
66 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* * * * *
13544052 CCGATGAAGAAAAATGTGACACC-ACACATGCCCCAACCCAGCATGTGCTGCCGCAA-CC-C--T
131 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
13544112 -C-G---G----T---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTACGCCT
196 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
13544155 AAGTGAACCCACGAAACGACCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAG
261 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * *
13544220 GGATCGGCAGGGTGCCCCTCTACGTACTGCTGATCCTGCTACTGCAACCCTCAGTCTGGTAC-GA
326 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGT-CTGA
*
13544284 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAG-GGGCGGGCACTAC
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCACTAC
* * * *
13544348 GCCAGCTAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACAT
455 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
13544413 CTTCATATTTCTTA-ATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
520 CTTCATATTTC-TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
13544477 CCTTCACGTGAAGTTTCATAGCAAGACGACTCATTTTCTATATTTT-ATGA-TTTTGAAAACTTT
584 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT-TTTTCATGATTTTTG-AAACTTT
* * * *
13544540 TTACGGTTCG-GAATTTTTAAAAATTTTTTTGGATGGAGTTTTGGCCCCAAACCTGGTAGATGTG
647 TTACGGTTCGAG-ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
13544604 ATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTT
711 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
13544669 GTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
776 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
13544734 AATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTCGAGCTTTGATGAGGGAT
841 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
13544785 AGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCAG-C
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCC
* * * * *
13544849 ACCCCGATCACCGGAACCCCAATGCCGCCGGTTAGGTTCCCCGACGATGCTCCGGCGATGGTGCC
66 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* *
13544914 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGGTGCCGCAACCCTCGAT
131 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
13544979 CCGGTCCGATCTTAGACTGGGAATGAACTCAGTATGCTTACACTGGGAATAAACTTCGTATGCCT
196 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
13545044 AAGTCAACAACCA--AAACGAGCGTACGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT
261 AAGTCAAC--CCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * ** ** *
13545107 TGGGATCGGTTGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAATCCAGTTTG
324 GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTG
* *
13545172 ACCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGACGGGCGGGCG
389 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-C-GA------GGCG
** *
13545237 GGCGGGCACGCACTACGCTAGCCCGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
443 GGC-GG---GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
13545302 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAGTTTTATGGCTTGTAAATTCATA
504 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
13545367 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA
569 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * ** * **
13545432 TTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTCACCCCAAAC
634 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
13545497 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
699 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
13545562 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
764 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
13545627 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
829 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
13545691 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCACCC-GG
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCAGC
* * * *
13545755 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGC
65 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * *
13545820 CCCGACGAAGAAAAATGTGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGG
130 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * *
13545885 TCTGGTCTGATCTTAGCCTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCTGTATGCC
195 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
13545950 TAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGTCGGCCAAAGGGGTGGGATGCGCAAGAC-
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
** * * * **
13546014 GGGATCGATCGAGTCCCCCTCTGCGTGCTGCTGATCCAGCTGCTACAA-CCTCGGTCTGGTCTGA
325 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA
*
13546078 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCAC
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-AGGCGGGCGGGCAC
*
13546143 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTA
452 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
13546208 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGGTCCCTTA
517 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
13546273 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAACGATTTTTGAAACTTT
582 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* ***
13546338 TTGCGGTTC-AGGATTTTTT-AAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
647 TTACGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
13546401 ATCCTTGTGTTTTTGTTGGCATGCAGAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
711 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
13546466 GTTACCATTTGAAAAAAGTGTCCCCAATTT-AGACACTTTAATGGCTACTGGCAGCAAACCTATA
776 GTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
13546530 AAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTGAT
840 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
13546583 AGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCCCGG
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCAG
* * * * * * **
13546648 CCCCCCCGATTGCCGAAACCCCAACGTCGTCGGTCAGGTTCTCCGACGATGCTCCAACGATGGTG
64 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* * * * * * *
13546713 CCCCGACGAAAAAAAATGCAGCACCAGCGCATGCCTGAGCCCAACATGTGCTGCCGCAACCCTTG
129 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* ** * *
13546778 GTCCGGTTCGATCTTAGACTTTGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGC
194 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
13546843 CTAAGTCAACCCACGAAACGTA-CGTACGGGTGCTCAACCGACTAGAGGGGCGAGATGCGCAAGT
259 CTAAGTCAACCCACGAAACG-AGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * *
13546907 CGGGGATCGGCCGGGTCCCTCC-CTGTGTGCTACCAATCCTACTGCTGCAACCCTCGGTCTGGT-
323 CGGGGATCGGCCGGGTCCC-CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTC
* * *
13546970 TCGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACAGACGAAACGA-GTGGGCGGGCA
387 T-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCA
** * * * * * * * ****** ** *
13547034 CTACGTTGGCCAGAGAGATGGGATGCGTAAGCTGGGGATTGGTTGGGTCCCCCTCTGCATGCTA-
451 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT-GGTAGGTGGGT-TTAG
* * * * *** * * * * ** * ***
13547098 CCGATCCTGCTGCCACAACCCT-CGAT-CCGAT-CGGA-TCTTA-GGC-GGGGAA-TGA-ACTCC
514 GC-A-CAT-CT-TCATATTTCTAC-ATGCCAATGC-CATTTTTATGGCTTGTAAATTCATACAAT
* ** * ** * * * *** * *****
13547155 GTATCCC-TAAGCCAACCGACG-AAACG-AGC-GGGC-GGGCGAGCATTACGTCGACCAGAAAGA
573 G-GTCCCTTAAGCC-TTC-ACGTGAA-GTTTCATGGCAAGACGA-C--T-CGTTTTCTA-TTTTT
** ** ** * * * **
13547215 CGGGA--TGCGCAAAGCCGTGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
629 CATGATTTTTG-AAA--C-T---T-TTTACGGTTCG-AGAT-TTTTTA---A-A-----AT-TTT
* * * *** ** * * * * *
13547277 CTGTGTGTCAATGCCATTTTTATGGCTTGTAAA-TTCATACA-ATGGTCCCT-TA--------AG
674 -T-T-TG-GAA-G-GA-GTTT-TGGC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *** ** * * * * * * **
13547331 CCTTCACGTGAAGTTTCATGGC-AAGACGACTC---GTTTTC--TATTTT-TCACGATTTTCAAA
730 CATGCACAAAAAAATTCA--GCTAA-A-AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * ** ** * *** ** ** * * * * *** *
13547389 AATTTTTACGGTTTGAGATTTTTTAAAAT-TTTTTTGGAAG--GA-GT-TTAGGCCCCAAA--CT
791 AAGTGTCCCCATTTCAGACACTTT--AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
** ** *** * **** * *** *
13547447 -TAGAA-GACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAA
854 CTTTAAGGGGGTG-T-GAGTTCTCGAGGTTTG-ATG---AGGGAT
**** * * ** *** * * * * ** * *
13547490 ATTCAGCTAAAAACTCTAAGTGTACAAG-ATTTTGTGA-TCATTTG-AAAAAAGTGTCCCCATTT
1 AGGGGGC---CAA-TATAAG-GGCCAAGTA-CCAG-CACCCA-TCGCACATCA-TGTGCGCA---
**** * ** ** * * * * * ** **
13547552 CAAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGA
54 C--AC-CCCCCA-GCCCCCCCG-ATC--GC-CG--GAA-CCCCAATGC-C-----GCCGGTCAG-
* * ** * * * * *
13547617 GTTCT-CGAG-GTTTGATGAGG-GATAGG-G----GGCCAA-TATAA-G-GG--CCAAGTACCA-
101 GTTCTCCG-GCG-ATGCTCCGGCGAT-GGTGCCCCGACGAAGAAAAATGCGGCACCAA-CA-CAT
* * * * * *
13547668 GCACCCATCGCACATCATGTGC-G-CACACCCCCTCGG-CC--CCCTGATC---G-CT-GGAACC
161 GC-CCGA--GCCCAGCATGTGCTGCCGCA-ACCCTCGGTCCGGTCC-GATCTTAGACTGGGAA--
** ** ** * ** ** * * * *** **
13547723 CCAACAGCG-CCG-TTCAGGTTCTCCGACGATGGTGCCCCG-A---CGAAG-AAAAATACGGCAC
219 TGAACTCCGTATGCTT-A-G-ACTGGGA--AT-GAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * *
13547781 CAAC--AC--ATGCTCGAG-C--CCAGCAGGTGC----TGCCGTAA-CC----CTCGGTCC-GGT
278 GAGCGTGCGGGTGCTC-AGCCGGCCAG-AGGGGCGGGATG-CGCAAGCCGGGGATCGG-CCGGGT
** * * ** * * *** *
13547829 -CCGATGTTAGAGTG-TGAATGAACTCTGCATGCCTAAGTGAACCCAT-GAAATGACCGTGCGGG
339 CCCCCT-CT-GCGTGCTG-CCGATC-CTGC-TGCC---G-CAACCC-TCGGTCTG---GT-C-TG
* * * ** *** * * * * * * *** *
13547891 CTCTCAG-CCGGCCA-GAGGGGCGGGATG-C---G-CAAGCCG-GGGATCGA-CCGGGTCCCCCT
389 ATCTTAGACTGGGAATGA-ACTCCGTATGCCTAAGCCAA-CCGACGAAACGAGGCGGG-CGGGCA
* * * * ** ** * * * *
13547947 CTACGTGCTGCC-GATCCTGTTGCCGTAACCCTCGATCCAGTCTGATCTTAGACT-GGGAATGAA
451 CTACG-CCGGCCAGA----G-AGACGGGATGCGCAAGCC-GT-GGATC---GA-TAGGG--TG--
* ** * * * * * *** * ** *******
13548010 CTCCGTATGCTTAAGTCA-A-C-CCATGAAGCGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCG
500 GTAGGT-GGGTTTAGGCACATCTTCAT--A--TTTC-TAC--ATGC-CA--ATGCCATTTTTATG
** ** * * * * * * ** *
13548072 GGATGCGCAAGTCGGGGAT-CGATCGGGTCCCCCCT-A-CGTGCTAC-CGATCTTGC-TGCTGC-
554 GCTTG-TAAATTC----ATACAAT--GGT--CCCTTAAGCCTTC-ACGTGAAGTTTCATG--GCA
* * * ** **** * * * * * ** ******
13548131 A-AC-CCTCAGTCTGGTCTGATCTTAGACTG-GGAATG-AACTCTGTATGCCTACGCCAACAGAC
607 AGACGACTC-GT-T-TTCT-ATTTTTCA-TGATTTTTGAAACTTTTTACG-GTTCGAGATTTTTT
* **** * ** * * ** * ** * ** * * * * **
13548192 GAAA-CGAGTGGGCGGGCACTACGTTGGCCAGAGAGATGGGATG-CGCAAGCCGTGGATCGATAG
666 AAAATTTTTTTGGAAGG-AGT--TTTGGCCCCAAACTTGGTA-GACGTGATCCTTGTAT--TTTT
* * ***** *** * * * ** * * * *
13548255 GGTGGTAGGTGGGTTTAGGCA--CATCTTCATATTTCGACGTG-CCAATGCCAGTTTTATG-GC-
725 GTTGGCA--TGCACAAAAAAATTCAGC-TAAAAACTCGAAGTGTACAA-G--A-TTTTGTGACCA
* * * * * * * *
13548315 -TTGTAAATTCATACAATGGT-CTC--TTAAG-C-CTTCACGTGAAGTTTCATGGCGAG-ACGAC
783 TTTG-AAA---A-A-AGT-GTCCCCATTTCAGACACTTTA-ATG--GCTAC-TGGC-AGCA-AAC
* ** * * * * * * * ** ** **
13548373 TCGTTTTATATTTTTCACAATTTTTGAAACT-TTTTA-CGGTTCGGGATTTTTTAAAATTTTTTC
835 -C--TGTA-AAATCTCA-AA----TG---CTCTTTAAGGGGGT-GTGAGTTCTCGAGGTTTGAT-
*
13548436 GGAAGGGGT
886 -G-AGGGAT
* ** * * * ** **
13548445 ATTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTA
1 A-GGGGGCC-AA--T-ATA-A-G-G-GCC----A----AG-TACCA-GCAC---CCA-TC-GC--
* * * * ****** *** * * * ***
13548510 AAAAATTGAAGTGTATAAGTTTTTGTGACCATTTGAAAAAAG-TGTCCCTAT-TCCAGACACTTT
40 --ACA-T-CA-TG--T--G----CG-CA-CA---CCCCCCAGCCCCCCCGATCGCCGGA-ACCCC
* * * ** * ** * * * * **
13548573 AATGGCTACTGGCAG-CAAACCTGTAAAATCTCAAATGC-ACT-TTAAGGGGGTGTGAGTTCTTG
86 AAT-GC--C-GCCGGTC--A--GGT----TCTC--CGGCGA-TGCTCCGGCGATG-GTG-CCCCG
* * ** ** * * * * *
13548635 AGGTTTGATGAAGGATAG-GGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCATAT-CATG
134 A----CGAAGAAAAAT-GCGGCACCAACA-CA-TGCC-----CGAG--CCCA--GCATGTGC-TG
* * * * ** * * * ** *
13548698 TGCGTACACCCCCCGGCCCCCT-CGCTCGTTGGAACCCCAATGCCGCCAATCAGGTTCTCCGACG
182 -CCG--CAACCCTCGGTCCGGTCCGATC-TTAG-A---C--TG--G-GAAT---GAACTCCG--T
** * * *** * * * * *
13548762 ATGCTCCGA-TGATGG--TG--CCCCG-ATG---AAG-AAAAATACGACACCAAC--AC--ATGC
229 ATGCTTAGACTG--GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
* * * * ** ** * ***** *
13548813 CCAAG-C--CCAGCATGTGC----TGCCGCAACCCTCGG-TCCGATTC-GATCTTAGACTGGGAA
292 TC-AGCCGGCCAG-AGGGGCGGGATG-CGCAAGCCGGGGAT-CG-GCCGGGTCCCCCTCTGCG--
** * * ** * ** * * **
13548869 TGAACT-CCGTATGCCT-AAG--TCAACCCACGAAAG-GAGCGTGCGGGCGCTCAG-CCGGCCA-
350 TG--CTGCCG-AT-CCTGCTGCCGCAACCCTCG---GTCTG-GT-C-TGATCTTAGACTGGGAAT
*** * * * ** * * * *** * * * *
13548927 GAGGGCAGGATG-C---G-CAAGCGGGGGATCGA-TCGGGTCCCCCTCTACG--TG-CTGTTGA-
405 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGG-CGGGCACTACGCCGGCCAG-AGAG
* ** * * * * ** * ** * * * *
13548982 TCCTGTTGC-CACAACCCTCGG-TCCGGTTTGATCTTAGACTGGG--AATGAAC-TCTGT-ATGC
468 ACGGGATGCGCA-AGCCGT-GGAT-CGATAGGGTGGTAG-GTGGGTTTAGGCACATCT-TCAT--
*** * ** * ****** * ** ** * * * ***
13549041 CAAAGCCAACCGAT-AAAATGAGCGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGATGGGAT
526 --ATTTCTA-C-ATGCCAATG-CCATTTTTA-TGGCTTG---TAAAT---TCATACA-ATGGTCC
* ** ** * *** * * * * *
13549105 GTGTAAGCCGTGGATC-T-ATAGGGTGATAGGTGGGTTTA-GGCACATCTTCATATTTCTGCATG
578 CT-TAAGCC-TTCA-CGTGA-AGTTTCAT-GGCAAG---ACGACTCGTTTTC-TATTT-TTCATG
*** ** * * ** * * * *
13549167 -TCAATGCCA-TTTTTATGGCTT-GTA-AATTCATATAATGGTCCCTTAAGCCTT-CATGTGAAG
633 ATTTTTGAAACTTTTTACGG-TTCG-AGATTTTTTAAAAT--T---TT----TTTGGAAG-G-AG
*** ** *** * ** *
13549227 TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTAAGG-AT
685 TTT--TGGC----C--C-CAAACT-TGGTAGACGTGATCCTTG-TA-TTTTT---GTT--GGCA-
**** ** *** * * * **
13549291 TTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
732 TGCACAAAA---------AA--A-TTCAG-CTAAAAAC-TCG-A-A-GTG-TACAAG-A-TTTTG
* ** ** ** * * * **
13549356 TTG-GCA--TGCACAAAAAAAGTCAGCTAAAAACTC-GA-ACTGTACA-AGATTTTGTGACCATT
777 -TGACCATTTG-A-AAAAAGTGTC--C--CCATTTCAGACACTTTA-ATGGCTACTG-G--CA--
* ** *** * * * **
13549415 TGAAAAAAGTGTCCCCATTTCAAA--CACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCA
829 -G-CAAACCTGT-AAAATCTCAAATGCTCTTTAA-GG-----GG--G------TGTGAGTTCTC-
* ** * * * *
13549478 AATCCTCTTTAAGGGGGTGT
876 GA-GGT-TTGATGAGGG-AT
** ** * * ** * *
13549498 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA-TACAAGGGCCAAGTAC-CAGCACCCA--T
1 -AG-----G-GG---G-CCA-ATATA-AGGGCCAAGTACCAGCACCCA-T-CGCA-CA-TCATGT
***** ** * * ** * * *
13549559 -CGCACATCATGTGAGCACACCTCCCCGGCCCCCCCGATCACCGGAACGCCAACGCTGTC-GG-T
49 GCGCACA-CCCCCCAG--C-CC-CCCC-GATCGCCGGA--ACCCCAATGCC-GC-CGGTCAGGTT
* ** * * * * *
13549621 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGC
104 C---TCCGGCGATG-C--TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGC
* * * * *
13549686 CCGAGCCCAGCATGTGCTGCCGCAACCGTCGGTCCAGTTCGATCTTGGACTGGGAATGAACTCCA
163 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * *
13549751 TATGCTTAGACTGGGAATAAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCT
228 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
** * * * *
13549816 CAGCCGGCCAGAGGGGCGGGATATGCAAGCTGGGGATCGGCCGGGTCCCCTTCTACATGCTGCCG
293 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCG
** * * ** * * *
13549881 ATCCTGCTG-CATAACCCTCGATCCGGTCCAATTTTAGACTAGGAATGAACTTCGTATGCCTAAG
358 ATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
13549945 CCAACCGACGAAACGAGTGGGCGGGCGAGCACTAC-CTCGACCAGAGAGACGAGATGCGCAAGCC
423 CCAACCGACGAAACGA---GGCGGGCGGGCACTACGC-CGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
13550009 GTGGATCGATAAGGTGTTAGGTGGGTTTAGGCACATCATCATATTTCTACGTGCCAATGCCATTT
484 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
13550074 TTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
549 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
13550139 TCGTTTCCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTT-AAATTTTTTTG
614 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTTG
* ** * * *
13550202 GAAGGGGTTTTGGGTCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAA
678 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
13550267 ATTCAGCTAAAAACTGGAAGTGTACAAGATTTCGTGACCATTTGAACAAAGTGTCCCCATTTCAG
743 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * * **
13550332 ACACTTTAATGGCTACTGGCAGCAAACCTATAGAATGTCAAATGCTTTTTAAGCAGGTGTGAGTT
808 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
13550397 CTCGAGGTTTGATGAGGAAT
873 CTCGAGGTTTGATGAGGGAT
* * *
13550417 AGGGTGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGAC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAG-C
* * * * * **
13550481 CCCCCCAATCGTCGGAACCCAAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGC
65 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * * * * * *
13550546 CCCAACGAAGAAAAATACGACACCGACACATGTCCAAGCCCAGCATGTGCTACCGTAACCCTCGA
130 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* **
13550611 TCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
195 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * *
13550676 TAAGTCAACACACGAAACGAGCGTGCAGGCGCTCAGTCAGCCAGAGGGGCGGGATGCGAAAGTCG
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * * *
13550741 GGGATCGGTCGGGTCCCCCTCTACGTGCTACAGATCTTGTTGCTGCAACCCTCAGTCTGGTCTGA
325 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA
* * * * *
13550806 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGACAACCGATGAAACGAGCGGGCGAGCGGGCAT
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGCGGGCGGGCAC
* *
13550871 TACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCA
452 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
13550936 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTTCCTTA
517 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
**
13551001 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT
582 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * * * * * *
13551066 TTGCGTTTCGAGAATTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAGCTTGGTGGACGTGA
647 TTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
13551131 TCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAATTTGAAGTGTACAAGATTTTG
712 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
13551196 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
777 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
13551261 ATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGAT
842 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* ** * * * *
13551312 AGGGGGCCAATATAAGGGTCAAGTACTGGCACCCATCTCACATCATGTGCGTACACCCCCCCTGG
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGC
* ** *
13551377 CCCCCCGATCGCCGGAACCCCAATGTCGCCATTCAGGTTCTCCGACGA---T------AT--TGC
65 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * *
13551431 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAGCCCTCGG
130 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
13551496 TCCGGTCCGCTCTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGAAAGAACTTCGTATGCC
195 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * ** **
13551561 TAAGTCGACCCAAGAAACGAGTGTGTGGGCGCAGAGCTAGCCAGAGGGGCGGGATGCGCAAGCCG
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * ** * *
13551626 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCATAACCCTCGATCCGGTCTG-
325 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA
* * * *
13551690 TCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAATGAGCGGGCGGGTGGGCAG
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGC------G--G
* * * *
13551755 GCGGGCACTACGTCGGTCAGAGAGACAGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
444 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
13551820 TTTAGGCACATCTTCATATTTCTGCATGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATG
509 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
13551885 GTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTGCACGATTTTC
574 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * * ** *
13551950 AAAATTTTTTACGGTTAGAGATTTTTTAATATTTATTCAGAAGGATTTTTGGCCCCAAACTTGGT
639 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
*
13552015 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACA
704 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
13552080 AGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
769 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
13552145 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
834 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
13552204 AGGGGGCCAATATAGGGGCCACGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGC
* * * ** * *
13552269 CCACCCGATCGTCGGAACCCAAATGCCGTTGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGC
65 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
** * * ** * *
13552334 CCC-AGCGAAGAAAAATATGGCACCAGCACATGCCTGAGCCCAGCATGTGCTATCGTAACCCTCA
130 CCCGA-CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* *
13552398 GTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
194 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
13552463 CTAAGTCAACACACGAAATGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGTGCAAGTC
259 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * ** * * *
13552528 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGGTCCTATTGCTGCAACCCTCAGTCTGGTCTA
324 GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTG
* *
13552593 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGGGCGGGCG
389 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------GGCGGGCG
* *
13552658 GGCGAGCATTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAG
447 GGC-A-C--TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*** *
13552723 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAAT
508 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
13552788 GGTCCCTTAAGCCTTCCCGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTT
573 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
** * * * *
13552853 CAAAACTTTTTATGTTTC-AGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
638 TGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
* * *
13552917 GTACACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAATTCGAAGTGTA
702 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
13552982 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
767 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
13553047 AACCTGTAAAATTTCAAATGCTCTTTAAGGGGGGGTGAGTTCTCGAGGTTTGATGAGGGAT
832 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
13553108 AGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGTGCACACCCCCTC-G-
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CAGC
* * * * * *
13553171 GCCCCCGATCGCCGGAACCCCAACGCCACTGGTCAGGTTCTCCGGGGATGCTCCGGTGATGGTGC
65 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * * *
13553236 CCCGACGAAGAAAAATACGGCACCAGCCCATGCCCGAGCCCAACATGTGCTGCCACAACCCTTGG
130 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
13553301 TCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAATTCCGTATGCC
195 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * *
13553366 GAAGTCAACCCACAAAACGAGCATGCAGGCGCTTAGCCGGCCAGAGGGCCGGGATGCACAAGCCG
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
** * ** * ** ** *
13553431 GGGATCGATCGGGTCCCCCTC-GATGTGCTATCGATCCTGCAGTAGCAACCCTCGGTCCAGTTTG
325 GGGATCGGCCGGGTCCCCCTCTG-CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTG
** *
13553495 CCCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGA-GCGGGCCAGCGGG
389 ATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGC-GG---GCGGG
* * *
13553558 CACTACGTCGGCCAGAGAGACGGAATGCGCAAGCCATGGATCGATAGGGT-GTAGGTGGGTTTAG
449 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
13553622 GCACATCTTCATATTTCTGCATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCC
514 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * * * *
13553687 TTAAGCCTTTACGTCAAGTTCCATGGCTAGACGACTCGTTTTTTATTTTTCATGATTTTCGAAGC
579 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * ** ** *
13553752 TTTTTTCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGATCCAAACTTGGTAGATG
644 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
13553817 TGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
709 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
13553882 TTGAGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAGTGGCAGCAAACCTGT
774 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
13553947 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
839 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
13554001 AGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCTTGTGCGCAC-CCCCCCATGG
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCA-GC
* * ** * * * * * *
13554065 CCCCCCGATCACCAGAACCCCAATGCCATCGGTTAGGTTCTCCAGTGATGCTCCGACGATGATTC
65 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * *
13554130 CCCGATGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCGCAACCATCGG
130 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
*
13554195 TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
195 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * ** * *
13554260 TAAGTCAACACACGAAACGTGTGTGCGGGCGCTCAGTCAACCATAGGGGCAGGATGCGCAAGCCG
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * *** * *
13554325 AGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTACAATCGCAACCCTCGATCTGGTTTGA
325 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA
* * *
13554390 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAACGGGCGGGCGGCGGG
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A--GGC--G-GGC--G
* *
13554455 TGGTCACTACGCCAGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
447 -GG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
13554520 TTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTAGGGCTTGTAAATTCATATAATGG
510 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* **** *
13554585 TCCCTTAAGCCTTCA--TG-ATTTTCGAAACT-TTTTG-CGACTCGTTTTTTATTTTTCATGATT
575 TCCCTTAAGCCTTCACGTGAAGTTTC---A-TGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * * * *
13554645 TTCGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGAAAGGTGTTTTAG-CCCAAACT
636 TTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
* * * * * * *
13554708 TGGTAGACATGAACCTTGTATTTTTGTTGGCCTGGACAAAAAATTTCAGCTAAAAAATTGAAGTG
700 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
13554773 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
765 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
13554838 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGCTTGATGAGGGAT
830 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
** * * * * *
13554901 AGGGTCCCAATATAAGGGCCAAGTACCAGCACCCATTGGACATCATGTGCGAAAACCCCCC-GGC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCC
* * ** *
13554965 CCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCTAGCGATGCTCCGGCGATGGTGCT
66 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* * * * * * * *
13555030 TCGGCGAAGTAAAATGTGACATCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTTCGG
131 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCGG
* ** * *
13555095 TCCGGTCCGATCTTAGACTGGGAAAGAACTCAATATGCTTAGACTGGGAATGAACTACGTATGCT
195 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * ** * ** * *
13555160 TAGACTGGGAATGAACTC-CGTATGCTTAGATTG-GGAATGAACTCCATATGCCTAAGTCAACCC
260 TA-A----G--TCAACCCACG-AAAC-GAGCGTGCGG-GTG--CT-C--A-GCC---G----GCC
* ** * * ** * *
13555223 ACGAAACGAGCGTGCGGG-TGCTC-AGCCAGCCAGA-GGGGCGGGATACACAAGC-CAG-G-GAT
302 A-G--A-G-G-G-GCGGGATGCGCAAGCC-G-GGGATCGGCCGGG-T-C-C-CCCTCTGCGTG-C
* * * ** * * * *
13555282 TGGTCGAGTCCCCCTCTGCGTGCTGCCAATCCT--G-CT-GTCACAACCCTCAGTCCGGTTTGAT
353 T-GCCGA-T----C-CTGC-TGCCG-CAACCCTCGGTCTGGTC-TGA-TCTTAGACTGG---GA-
* * ** * * * * * * * ** ** *** * * * *
13555343 CTTAGACTGGGAATG---AACTCCATA-TGCCTAAGCCAACCGACCAAACGAGT-TGGCGGGC-G
403 ATGA-ACTCCGTATGCCTAA-GCCA-ACCGACGAAACGAGGCGGGCGGGC-ACTACGCCGGCCAG
* * * * ** * ** * * ***
13555402 -G-G-CGGGCACTACGTC-AGCCAGAGAGA-CG---GGATGCGCAAGCCGCGAAT-CG-ATAGGG
464 AGAGACGGG-A-TGCG-CAAGCC-GTG-GATCGATAGGGTG-G-TAGGTGGGTTTAGGCACATCT
** *** ** * * * * * * *** *
13555457 TGGTAGGTGGGTTTA-GGCACATCTCCATATTTCT-GCATGCT-AATGCCATTTTATGG--CTTG
522 TCATA--TTTCTACATGCCA-AT-GCCATTTTTATGGCTTG-TAAAT-TCATACAATGGTCCCT-
* * * * *** * **
13555517 TAA--ATTCA--TACAATGCTCCCTT-AAGCCTTCACGTGAAATTTCATGGCAAGACGGCTCGTT
580 TAAGCCTTCACGT-GAA-G-T---TTCATGGCAAGAC--G--ACTCG----------------TT
* * *
13555577 TTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
619 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA
* * *
13555642 TTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAG
684 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * *
13555707 CTAAAAACTTGAAGAGTACAAGATTTTATGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTT
749 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
13555772 TAATGGCTACTGGCTGCAAACCTGTAAAAACTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAG
814 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
13555837 GTTTGATGAGGGAT
879 GTTTGATGAGGGAT
* * *
13555851 ATGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCC
* ** * *
13555916 CCCCCGATCGCCGGAA-CCCAATGCCGTCGGTCAGGTTCTTTGGTGATGCTCCGACGATGGTGCC
66 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* * * ** **
13555980 CCGACGAAGAAAAATGTGGCACCAACACATGGCCGAGCCTAGCATGTGCTATCATAA-CC-C--T
131 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
13556041 -CGATCC-A--TT---CT--G-AT---CT---TA-G---A-TC-GAGAATGAACTACGTATGCCT
196 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *** * ** * *
13556084 AAGTCAACCCACAAAACGAGCGTACGGACACTCAGCCGACCAGAGGGGCATGATGTGTAAGCCGG
261 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* ** * *
13556149 GGATCAGCTAGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGT-TCGA
326 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT-GA
*
13556213 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCAGCGAAACGAGCGGACAGGCAGGTAG
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-C--CG--ACGA----A-A--C--G-AG
* *
13556278 GCGGGCGGG-ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCG--A------TAGG
440 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
13556334 TGGGTTTAGGCACATCTGT-ATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
505 TGGGTTTAGGCACATCT-TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* ** *
13556398 CAATGCTCCCTTAAGCCTTCACAAGAAGTTTCATGGCAATACGACTCGTTTTCTATTTTTCATGA
569 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * *
13556463 TTTTCGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTAG-CCCAAA
634 TTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* * *
13556526 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTTCAGCTAAAAACTCGAAG
698 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
13556591 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGC
763 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
13556656 AGCAAACCTGTAAAATTTCAAATACTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
828 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
13556720 AGGGGGCCAATATAAGGGCCAAGTACC--CACCCATTGCACATCATGTGCGCA-AACCCCC-GGC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCC
* * * *
13556781 CCCCCGATCGCAGAAACCCAAATGCCGTCGGTCAGGTTCTTCGATGATGCTCCGGCGATGCTCCG
66 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA-G------G-T--T-CTCCGGCGATGCTCCG
* * ** * * ** *
13556846 ACGATGGTGCCTCGGGGAAGAAAAATGCGACACCAACAAATGCTTGAGCCTAGCATGTGCTGCCG
120 GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * * *
13556911 CAACCCTCGG-CCTGATCCAATCTTAGACTGGGAAAGAACTCAGTTTGCTCAGACTGGGAATGAA
185 CAACCCTCGGTCC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
13556975 CTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGAGCTCAGCCGGCCAAAGGGGCGGGA
249 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * * * * *
13557040 TGCACAAGCCGAGGATTGGTCGGGTCCCCCTTTGTGTGCTGTCGATCCTACTACTGCAACCGTCG
314 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
* * * * *
13557105 GTTTGGTCTGATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCCAACTGACAAAACGAGCGGG
379 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GG
* * * * *
13557170 CGGGCGAACGGGCACTACACCGACCAGAGAGACGAGATGCGCAAACCGTGGATTGATAGGGTGGT
441 C-GG-G--CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
13557235 AAGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCA
502 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* ** *
13557300 TACAATGGTCCCTTAAGCATTCACAAGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCAT
567 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * *
13557365 GATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGG--CCA
632 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTT-GGCCCCA
* * * *
13557428 AACTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCATAAAAAATTTCAGCTAAAAACTCGA
696 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
13557493 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATCGCTACTG
761 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
13557558 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
826 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
13557623 AT
891 AT
* *
13557625 AGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACCCCCCAGGC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCA-GC
* * * **
13557690 CCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTTCGATGATGCTCCGGCGATGGTGC
65 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * *
13557755 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCAAGTGCTACTGTAACCCTCCG
130 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
13557820 TTCGGTCCGATCTTAGACTTGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCC
195 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
13557885 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCGGTCGGCCAGAAGGGCGGGATGCACAACCCT
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * * * * * *
13557950 GGGATCGACCGGGTCCCACTGTACATGCTGTCGATGCTAG-TACCGCAACCCTTGATCTGGTCCG
325 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCT-GCTGCCGCAACCCTCGGTCTGGTCTG
*
13558014 ATCTTAGACTTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGAGTGGGCGGGC
389 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGA-------GGC
* * * * * *
13558079 GGGCGGGCACAACGCCGGTCAGAGAGACAGGATGCACAAGCCGTGGATCAATAGTGTGGTAGGTG
442 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
13558144 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
507 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
13558209 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
572 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * *
13558274 TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATG
637 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
* *
13558339 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTA
702 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
13558404 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
767 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
13558469 AACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGAT
832 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
13558530 AGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGCACACCCCCCCGGC
1 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCC
* * * * * **
13558595 CCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTTCGATGATGGTGCC
66 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* * * *
13558660 TCGATGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGAT
131 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
** * **
13558725 CTAGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCT
196 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
13558790 AAGTTAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGG
261 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * * * * *
13558855 GGATAGGTCGGGTCCCCCTCTGTGTACTGTCGATCCTGCTGCTGCAACTCTCAGTCCGATCCGAT
326 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* *
13558920 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAACGAGTGGGCGGGCGAACGGG
391 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGC-GG-G--C--G
*
13558985 TAGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
447 --GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
13559050 TTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
510 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
13559115 TCCCTTAAGCCTTCACGTCAAGT
575 TCCCTTAAGCCTTCACGTGAAGT
13559138 GTACAAGATT
Statistics
Matches: 21135, Mismatches: 3452, Indels: 2630
0.78 0.13 0.10
Matches are distributed among these distances:
844 1 0.00
845 1 0.00
847 54 0.00
848 1 0.00
849 2 0.00
850 1 0.00
851 172 0.01
852 403 0.02
853 39 0.00
854 2 0.00
855 4 0.00
856 2 0.00
857 1 0.00
858 2 0.00
859 2 0.00
860 54 0.00
861 8 0.00
862 172 0.01
863 404 0.02
864 118 0.01
865 20 0.00
866 27 0.00
867 78 0.00
868 377 0.02
869 188 0.01
870 174 0.01
871 80 0.00
872 29 0.00
873 110 0.01
874 289 0.01
875 283 0.01
876 51 0.00
877 83 0.00
878 305 0.01
879 12 0.00
880 3 0.00
881 6 0.00
882 18 0.00
883 7 0.00
884 58 0.00
885 263 0.01
886 440 0.02
887 118 0.01
888 125 0.01
889 217 0.01
890 1174 0.06
891 282 0.01
892 868 0.04
893 877 0.04
894 1080 0.05
895 763 0.04
896 432 0.02
897 403 0.02
898 517 0.02
899 833 0.04
900 533 0.03
901 480 0.02
902 730 0.03
903 857 0.04
904 1873 0.09
905 1053 0.05
906 162 0.01
907 361 0.02
908 55 0.00
909 22 0.00
910 41 0.00
911 30 0.00
912 30 0.00
913 44 0.00
914 16 0.00
915 12 0.00
916 20 0.00
917 24 0.00
918 31 0.00
919 19 0.00
920 34 0.00
921 19 0.00
922 12 0.00
923 42 0.00
924 25 0.00
925 204 0.01
926 237 0.01
927 358 0.02
928 150 0.01
929 21 0.00
930 13 0.00
931 19 0.00
932 15 0.00
933 10 0.00
934 9 0.00
935 22 0.00
936 19 0.00
937 18 0.00
938 19 0.00
939 13 0.00
940 14 0.00
941 24 0.00
942 8 0.00
943 17 0.00
944 8 0.00
945 15 0.00
946 3 0.00
947 9 0.00
948 4 0.00
949 67 0.00
950 330 0.02
951 20 0.00
952 5 0.00
953 3 0.00
954 3 0.00
955 4 0.00
956 13 0.00
957 7 0.00
958 4 0.00
959 2 0.00
963 1 0.00
965 8 0.00
966 1 0.00
967 3 0.00
968 1 0.00
969 1 0.00
970 5 0.00
971 1 0.00
972 14 0.00
973 4 0.00
974 1 0.00
976 3 0.00
978 10 0.00
979 3 0.00
980 9 0.00
981 1 0.00
982 8 0.00
983 8 0.00
984 8 0.00
985 3 0.00
986 1 0.00
987 5 0.00
989 3 0.00
990 9 0.00
991 8 0.00
992 20 0.00
993 20 0.00
994 4 0.00
995 9 0.00
996 9 0.00
997 13 0.00
998 23 0.00
999 12 0.00
1000 12 0.00
1001 11 0.00
1002 18 0.00
1003 22 0.00
1004 35 0.00
1005 32 0.00
1006 31 0.00
1007 38 0.00
1008 15 0.00
1009 16 0.00
1010 23 0.00
1011 28 0.00
1012 12 0.00
1013 6 0.00
1014 1 0.00
1015 3 0.00
1016 11 0.00
1017 3 0.00
1018 16 0.00
1019 2 0.00
1020 6 0.00
1021 39 0.00
1022 92 0.00
1023 5 0.00
1024 184 0.01
1025 150 0.01
1026 135 0.01
1027 139 0.01
1028 76 0.00
1029 118 0.01
1030 363 0.02
1031 217 0.01
1032 184 0.01
1033 89 0.00
1034 111 0.01
1035 145 0.01
1036 137 0.01
1037 127 0.01
1038 195 0.01
1039 140 0.01
1040 100 0.00
1041 89 0.00
1042 78 0.00
1043 60 0.00
1044 47 0.00
1045 52 0.00
1046 36 0.00
1047 44 0.00
1048 32 0.00
1049 42 0.00
1050 30 0.00
1051 238 0.01
1052 34 0.00
1053 141 0.01
1054 479 0.02
1055 254 0.01
1056 162 0.01
1057 52 0.00
1058 25 0.00
1059 365 0.02
1060 212 0.01
1061 12 0.00
1062 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCC
CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCACTACG
CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
GGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
Found at i:13535258 original size:26 final size:26
Alignment explanation
Indices: 13535229--13535281 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13535219 CCGGTCTGAT
13535229 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13535255 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13535281 C
1 C
13535282 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13537024 original size:26 final size:26
Alignment explanation
Indices: 13536988--13537040 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13536978 TCAGTTCGAT
13536988 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13537014 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13537040 C
1 C
13537041 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13537925 original size:26 final size:26
Alignment explanation
Indices: 13537889--13537957 Score: 138
Period size: 26 Copynumber: 2.7 Consensus size: 26
13537879 CCGGTCCGAT
13537889 CTTAGACTGGGAATGAACTTTGGATG
1 CTTAGACTGGGAATGAACTTTGGATG
13537915 CTTAGACTGGGAATGAACTTTGGATG
1 CTTAGACTGGGAATGAACTTTGGATG
13537941 CTTAGACTGGGAATGAA
1 CTTAGACTGGGAATGAA
13537958 GTCCGTATGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.29, C:0.12, G:0.30, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTGGATG
Found at i:13537967 original size:26 final size:26
Alignment explanation
Indices: 13537889--13537967 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
13537879 CCGGTCCGAT
**
13537889 CTTAGACTGGGAATGAACTTTGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
**
13537915 CTTAGACTGGGAATGAACTTTGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
* *
13537941 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGGATG
13537967 C
1 C
13537968 CTAAGTCATC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:13540612 original size:26 final size:26
Alignment explanation
Indices: 13540576--13540628 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13540566 ATGGTTTGAT
13540576 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13540602 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13540628 C
1 C
13540629 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13543261 original size:26 final size:26
Alignment explanation
Indices: 13543225--13543277 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13543215 CCGATCCGAT
*
13543225 CTTAGAATGGGAATGAACTCGGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
13543251 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
13543277 C
1 C
13543278 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:13545025 original size:26 final size:26
Alignment explanation
Indices: 13544989--13545041 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13544979 CCGGTCCGAT
* *
13544989 CTTAGACTGGGAATGAAC-TCAGTATG
1 CTTACACTGGGAATAAACTTC-GTATG
13545015 CTTACACTGGGAATAAACTTCGTATG
1 CTTACACTGGGAATAAACTTCGTATG
13545041 C
1 C
13545042 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTTCGTATG
Found at i:13546091 original size:905 final size:903
Alignment explanation
Indices: 13544126--13547020 Score: 4030
Period size: 905 Copynumber: 3.2 Consensus size: 903
13544116 CTGGTCCGAT
* * * * *
13544126 CTTAGACTGGGAATGAACTCCGTACGCCTAAGTGAACCCACGAAACGACCGTGCGGGCGCTCAGT
1 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
13544191 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCG-GCAGGGTGCCCCTCTACGTACTGCTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGAGC-GGGTCCCCCTCTGCGTGCTGCCGATC
*
13544255 CTGCTACTGCAACCCTCAGTCTGGTAC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
130 CTGCTACTGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
13544319 AACCGACG--A-AA-C-GA------AG-GGGCGG-GCACTACGCCAGCTAGAGAGACGGGATGCG
194 AACCGACGAAACAAGCGGACGGGCGGGCGGGCGGAGCACTACGCTAGCCAGAGAGACGGGATGCG
* * **
13544371 CAAGTCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTTAATGCCAATG
259 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
13544436 CCACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAA
324 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
13544501 GACGACTCATTTTCTATATTTT-ATGA-TTTTGAAAACTTTTTACGGTTCGGAATTTTTAAAAAT
389 GACGACTCGTTTTCTAT-TTTTCATGATTTTTG-AAACTTTTTGCGGTTCGGGATTTTTTAAAAT
* * * * *
13544564 TTTTTTGGATGGAGTTTTGGCCCCAAACCTGGTAGATGTGATCCTTGTATTTTTGTTGGTATGCA
452 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
13544629 CAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCC
517 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
13544694 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGGT
582 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
13544758 GTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCG
647 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
13544823 CACATCATGTGCGTACACCCCCCAGCACCCCGATCACCGGAACCCCAATGCCGCCGGTTAGGTTC
712 CACATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTC
*
13544888 CCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
777 CCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* * *
13544953 CAGCATGTGGTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCAGTATG
842 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
13545015 CTTACACTGGGAATAAACTTCGTATGCCTAAGTCAACAACCA--AAACGAGCGTACGGGCGTTCA
1 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAAC--CCACGAAACGAGCGTGCGGGCGCTCA
* * *
13545078 GCCGGCCAGAGGGGCGGGATGCGCAAGCTTGGGATCG-GTTGGGTCCCCCTCTACGTGCTGCCGA
64 GCCGGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGAG-CGGGTCCCCCTCTGCGTGCTGCCGA
* ** ** * * *
13545142 TCCTGCTACCGCAACCCTCAATCCAGTTTGACCTTAGGCTGGGAATGAACTCCGTATGCCTAAGC
128 TCCTGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
*
13545207 CAACCGACGAAACAAGCGGACGGGCGGGCGGGCGGGCACGCACTACGCTAGCCCGAGAGACGGGA
193 CAACCGACGAAACAAGCGGACGGGCGGGCGGGC-GG-A-GCACTACGCTAGCCAGAGAGACGGGA
13545272 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
255 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
13545337 AATGCCAGTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
320 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
13545402 GCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAA
385 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA
* * **
13545467 ATTTTTTCAGAAGGATTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
450 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
13545532 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
515 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
13545597 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
580 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
13545662 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
645 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
**
13545727 CGCACATCATGTGCGCACACCCACCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
710 CGCACATCATGTGCGCACACCC-CCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGG
** * *
13545792 TTCTTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCTGA
774 TTCCCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGA
* * * *
13545857 GCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGCCTGGGAATGAACTCCGTATG
839 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
13545922 CTTACACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGT
1 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
13545987 CGGCCAAAGGGGTGGGATGCGCAAGAC-GGGATCGATCGAGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGAGCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
13546051 AGCTGCTACAA-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * **
13546115 CCGATG--A-AA-C-GA---GCAGGCGGGCGG-GCACTACGCCGGCCAGAGAGACGGGATGCGCA
196 CCGACGAAACAAGCGGACGGGCGGGCGGGCGGAGCACTACGCTAGCCAGAGAGACGGGATGCGCA
* *
13546171 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCC
261 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
13546236 ATTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
326 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
13546301 CGACTCGTTTTCTATTTTTAACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTT-AAATTTTT
391 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
** * *
13546365 TCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTTGGCATGCAGAAA
456 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
13546430 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCAATT
521 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATT
* *
13546495 T-AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAATTGCTCTTTAAGGGGGTGTG
585 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
13546559 AGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCAC
650 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * * * *
13546624 ATCATGTGCGCACAGCCCCCCCGGCCCCCCCGATTGCCGAAACCCCAACGTCGTCGGTCAGGTTC
715 ATCATGTGCGCACA--CCCCCCGG-CCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * *
13546689 TCCGACGATGCTCCAACGATGGTGCCCCGACGAAAAAAAATGCAGCACCAGCGCATGCCTGAGCC
777 CCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* * * ** *
13546754 CAACATGTGCTGCCGCAACCCTTGGTCCGGTTCGATCTTAGACTTTGAATGAACTCCATATG
842 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
13546816 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGTA-CGTACGGGTGCTCAA
1 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-AGCGTGCGGGCGCTCAG
* * * * * * * *
13546880 CCGACTAGAGGGGCGAGATGCGCAAGTCGGGGATCG-GCCGGGTCCCTCC-CTGTGTGCTACCAA
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGAG-CGGGTCCC-CCTCTGCGTGCTGCCGA
* * *
13546943 TCCTACTGCTGCAACCCTCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTATG
128 TCCTGCTACTGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
*
13547007 CCAACAGACGAAAC
192 CCAACCGACGAAAC
13547021 GAGTGGGCGG
Statistics
Matches: 1792, Mismatches: 174, Indels: 70
0.88 0.09 0.03
Matches are distributed among these distances:
889 172 0.10
891 4 0.00
892 264 0.15
893 216 0.12
894 225 0.13
895 37 0.02
896 58 0.03
897 9 0.01
898 1 0.00
900 3 0.00
901 5 0.00
902 4 0.00
903 1 0.00
904 4 0.00
905 430 0.24
906 129 0.07
907 230 0.13
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (903 bp):
CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGAGCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACAAGCGGACGGGCGGGCGGGCGGAGCACTACGCTAGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCCCCG
ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:13546829 original size:26 final size:26
Alignment explanation
Indices: 13546790--13546842 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13546780 CCGGTTCGAT
**
13546790 CTTAGACTTTGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
13546816 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
13546842 C
1 C
13546843 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13548099 original size:159 final size:158
Alignment explanation
Indices: 13547805--13548180 Score: 513
Period size: 159 Copynumber: 2.4 Consensus size: 158
13547795 GCCCAGCAGG
* * * * * * *
13547805 TGCTGCCGTAACCCTCGGTCCGGTCCGATGTTAGAGTGTGAATGAACTCTGCATGCCTAAGTGAA
1 TGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* *
13547870 CCCATGAAATGACCGTGCGGGCTCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
66 CCCATGAAACGACCGTACGGGCTCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
*
13547935 CCGGGTCCCCCTCTACGTGCTGCCGATCC
131 CCGGGTCCCCC-CTACGTGCTACCGATCC
* * * *
13547964 TGTTGCCGTAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAA
1 TGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* * *
13548029 CCCATGAAGCGAGCGTACGGG-TGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCG
66 CCCATGAAACGACCGTACGGGCT-CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* *
13548093 ATCGGGTCCCCCCTACGTGCTACCGATCT
130 ACCGGGTCCCCCCTACGTGCTACCGATCC
* * *
13548122 TGCTGCTGCAACCCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTA
1 TGCTGCCGTAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTA
13548181 CGCCAACAGA
Statistics
Matches: 189, Mismatches: 26, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
157 1 0.01
158 66 0.35
159 122 0.65
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
TGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
CCCATGAAACGACCGTACGGGCTCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
CCGGGTCCCCCCTACGTGCTACCGATCC
Found at i:13548221 original size:158 final size:159
Alignment explanation
Indices: 13547805--13548257 Score: 446
Period size: 158 Copynumber: 2.9 Consensus size: 159
13547795 GCCCAGCAGG
* * * * * * * * * **
13547805 TGCTGCCGTAACCCTCGGTCCGGTCCGATGTTAGAGTGTGAATGAACTCTGCATGCCTAAGTGAA
1 TGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
13547870 CCCATGAAATGACCGTG-CGGGCTCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
66 CACACGAAACGAGCG-GACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* *
13547934 ACCGGGTCCCCCTCTACGTGCTGCCGATCC
130 ATCGGGTCCCCCTCTACGTGCTACCGATCC
* * * *
13547964 TGTTGCCGTAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAA
1 TGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** *
13548029 CCCATGAAGCGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGA
66 CACACGAAACGAGCGGACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
*
13548094 TCGGGTCCCCC-CTACGTGCTACCGATCT
131 TCGGGTCCCCCTCTACGTGCTACCGATCC
* ** * *
13548122 TGCTGCTGCAACCCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTACGCCA
1 TGCTGCCGCAACCCTCGA-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * ** *
13548186 ACAGACGAAACGAGTGGGCGGGCACT-ACGTTGGCCAGAGAGATGGGATGCGCAAGCCGTGGATC
65 ACACACGAAACGAGCGGACGGGCACTCA-GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
*
13548250 GATAGGGT
129 GATCGGGT
13548258 GGTAGGTGGG
Statistics
Matches: 244, Mismatches: 47, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
157 2 0.01
158 121 0.50
159 121 0.50
ACGTcount: A:0.21, C:0.28, G:0.32, T:0.20
Consensus pattern (159 bp):
TGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CACACGAAACGAGCGGACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
TCGGGTCCCCCTCTACGTGCTACCGATCC
Found at i:13549291 original size:26 final size:24
Alignment explanation
Indices: 13549262--13549320 Score: 64
Period size: 26 Copynumber: 2.4 Consensus size: 24
13549252 TATTTTTCAT
*
13549262 GATTTTTGAAACTTTTTGCGGTTAAG
1 GATTTTTGAAAATTTTTGCGG--AAG
* *
13549288 GATTTTTTAAAATTTTTTCGGAAG
1 GATTTTTGAAAATTTTTGCGGAAG
*
13549312 GAGTTTTGA
1 GATTTTTGA
13549321 CCCCAAACTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 10 0.36
26 18 0.64
ACGTcount: A:0.25, C:0.05, G:0.22, T:0.47
Consensus pattern (24 bp):
GATTTTTGAAAATTTTTGCGGAAG
Found at i:13550658 original size:26 final size:26
Alignment explanation
Indices: 13550622--13550674 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13550612 CTGGTTTGAT
13550622 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13550648 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13550674 C
1 C
13550675 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13551536 original size:26 final size:26
Alignment explanation
Indices: 13551507--13551559 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13551497 CCGGTCCGCT
*
13551507 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAAACAACTCCGTATG
* *
13551533 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAACAACTCCGTATG
13551559 C
1 C
13551560 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAACAACTCCGTATG
Found at i:13552439 original size:26 final size:26
Alignment explanation
Indices: 13552410--13552462 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13552400 CCGGTCTGAT
*
13552410 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13552436 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13552462 C
1 C
13552463 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13553348 original size:26 final size:26
Alignment explanation
Indices: 13553312--13553364 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13553302 CTGATCCGAT
13553312 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
13553338 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13553364 C
1 C
13553365 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13554235 original size:26 final size:26
Alignment explanation
Indices: 13554206--13554258 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13554196 CCAGTCCGAT
13554206 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13554232 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13554258 C
1 C
13554259 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13555142 original size:26 final size:26
Alignment explanation
Indices: 13555106--13555210 Score: 140
Period size: 26 Copynumber: 4.0 Consensus size: 26
13555096 CCGGTCCGAT
*
13555106 CTTAGACTGGGAAAGAACTCAATATG
1 CTTAGACTGGGAATGAACTCAATATG
*
13555132 CTTAGACTGGGAATGAACT-ACGTATG
1 CTTAGACTGGGAATGAACTCA-ATATG
**
13555158 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAATATG
* *
13555184 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCAATATG
13555210 C
1 C
13555211 CTAAGTCAAC
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
25 1 0.01
26 71 0.99
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAATATG
Found at i:13555210 original size:52 final size:52
Alignment explanation
Indices: 13555106--13555210 Score: 156
Period size: 52 Copynumber: 2.0 Consensus size: 52
13555096 CCGGTCCGAT
*
13555106 CTTAGACTGGGAAAGAACTCAATATGCTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAAAGAACTCAATATGCTTAGACTGGGAATGAACTACATATG
* ** * *
13555158 CTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCAATATGCTTAGACTGGGAATGAACTACATATG
13555210 C
1 C
13555211 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (52 bp):
CTTAGACTGGGAAAGAACTCAATATGCTTAGACTGGGAATGAACTACATATG
Found at i:13557860 original size:26 final size:26
Alignment explanation
Indices: 13557831--13557883 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13557821 TCGGTCCGAT
*
13557831 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13557857 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13557883 C
1 C
13557884 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:13559512 original size:26 final size:26
Alignment explanation
Indices: 13559463--13559513 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13559453 AGTCCAATCC
**
13559463 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
13559489 TAGATTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
13559514 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:13559800 original size:726 final size:729
Alignment explanation
Indices: 13558397--13559863 Score: 2199
Period size: 726 Copynumber: 2.0 Consensus size: 729
13558387 TAAAAACTCA
13558397 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
13558462 GGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGG
66 GGCAGCAAACCTATAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
13558527 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGCACACCCCCCC
131 GATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * *
13558592 GGCCCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTTCGATGATGGT
196 GACCCCCCGATCACCAGAACCCCAATGCCATCGGTCAGGTTCTC--GTGA----TC-A-GATGGT
* * * * *
13558657 GCCTCGATGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTC
253 GCCCCGATGAAAAAAAATACGGCACCAACACATGCCCAAGCCCAGCATGTGCTACCGCAACCATC
* * * ***
13558722 GATCTAGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATG
318 GATCCAGTCCAATCCTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCATATG
*
13558787 CCTAAGTTAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGC
383 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGC
** * * *
13558852 CGGGGATAGGTCGGGTCCCCCTCTGTGTACTGTCGATCCTGCTGCTGCAACTCTCAGTCCGATCC
448 CGGGGATAGGTCGGGTCCCCCTCTGCATACTGTCGATCCTGCTGCCGCAACCCTCAATCCGATCC
* * * * * *
13558917 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAACGAGTGGGCGGGCGAAC
513 AATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGAAC
* *
13558982 GGGTAGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
578 GGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTG
13559047 GGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
643 GGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
13559112 TGGTCCCTTAAGCCTTCACGTC
708 TGGTCCCTTAAGCCTTCACATC
13559134 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
13559199 GGCCGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTTATGAGG
66 GGCAGCAAACCTATAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
13559264 GATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCTC
131 GATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * *
13559328 GACCCCCCTGATTATCGGAACCCCAATGCCATCGGTCAGGTTCTC-TGA-C-GATGGTGCCCCGA
196 GACCCCCC-GATCACCAGAACCCCAATGCCATCGGTCAGGTTCTCGTGATCAGATGGTGCCCCGA
* * *
13559390 TGAAAAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCATCGGTCCAG
260 TGAAAAAAAATACGGCACCAACACATGCCCAAGCCCAGCATGTGCTACCGCAACCATCGATCCAG
* * *
13559455 TCCAATCCTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCATATGCCTAAGT
325 TCCAATCCTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGT
* * ** * * *
13559520 CAACCCATGAAATGAGCGTGCGGGTGCTCAGTCGGCCAGA-GGGTCGGGATGTGTAAGTCGGGGA
390 CAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGT-GGGATGCGCAAGCCGGGGA
* * * * * *
13559584 TCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCGTAACCCTCAATCTGGTCTAATCTT
454 TAGGTCGGGTCCCCCTCTGCATACTGTCGATCCTGCTGCCGCAACCCTCAATCCGATCCAATCTT
*
13559649 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGTA-CGAGCGGGCGGACGGGCA
519 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACG-AGCGAGCGGGCGAACGGGCA
* * * *
13559713 GGCACTGCGGCGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTTGTAGGTGGGTTT
583 GGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTT
*
13559778 AGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTC
648 AGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
13559843 CCTTAAGCCTTCACATC
713 CCTTAAGCCTTCACATC
13559860 AAGT
1 AAGT
13559864 TTCATGGCAA
Statistics
Matches: 661, Mismatches: 66, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
725 4 0.01
726 429 0.65
727 1 0.00
729 1 0.00
734 3 0.00
736 13 0.02
737 210 0.32
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (729 bp):
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTATAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
GACCCCCCGATCACCAGAACCCCAATGCCATCGGTCAGGTTCTCGTGATCAGATGGTGCCCCGAT
GAAAAAAAATACGGCACCAACACATGCCCAAGCCCAGCATGTGCTACCGCAACCATCGATCCAGT
CCAATCCTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATA
GGTCGGGTCCCCCTCTGCATACTGTCGATCCTGCTGCCGCAACCCTCAATCCGATCCAATCTTAG
ACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGAACGGGCAGGC
ACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACATC
Found at i:13561264 original size:26 final size:26
Alignment explanation
Indices: 13561235--13561287 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13561225 CCAATCCGAT
13561235 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
* *
13561261 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
13561287 C
1 C
13561288 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:13562173 original size:26 final size:26
Alignment explanation
Indices: 13562137--13562189 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13562127 CTGATCTGAT
*
13562137 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
13562163 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
13562189 C
1 C
13562190 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:13563063 original size:26 final size:26
Alignment explanation
Indices: 13563034--13563086 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13563024 CCAGTCCGAT
13563034 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13563060 CTTAGATTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13563086 C
1 C
13563087 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13564144 original size:899 final size:897
Alignment explanation
Indices: 13561151--13571979 Score: 13431
Period size: 899 Copynumber: 12.1 Consensus size: 897
13561141 GTTCTCCGGT
* * * * * * *
13561151 GATGGTGCCCCGATGAATAAAAATGCAGCATCAGCACATGCCTGAGCCCAGCATGTGCTGTCGTA
1 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * ** * *
13561216 ACCCTCGATCCAATCCGATCTTAGACTAGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
66 ACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
** *
13561281 CGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * *
13561346 GGAAGCCGGGGATCGGT-TGGTCCCCCTCTATGTGCTG-TCGATCCTGCTACCGTAACCCTTGGT
196 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTACCGCAACCCTCGAT
* * * * ** * * * **
13561409 CCGATCCAATGTTAGAGAGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGTGGGTG
260 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCAG
*
13561474 G-GTTGGCGGGCAGGCACTACGCTGGCCCA-AGAGACGGGATGCGCAAGCCGTCGATCGATAGGG
325 GCG--GGC--G-A-GCACTACGCTGG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * *
13561537 TGGGAGGTGGGTTTAGGCACATCTTCATATTTCTACCTACCAATGCCATTTTTATGGCTTGTAAA
383 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
13561602 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTT
448 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
13561667 TCACGATTTTCAAAACTTTTTGCGCTTCGAGA-TTTTTAAAATTTTTTCGGAAGGTGTTTTGACC
513 TCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
13561731 CCAAACTTGGTAGGCGTGATACTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACT
578 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
13561796 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTA
643 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
13561861 CTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
708 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* *
13561926 GGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGTACCCATCGCACATCATGTGCGCACACCACC
773 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CC
* * * * * * * *
13561991 CTGACCCCCCCAATCGTCGGAACCCCAATGCCACCTGTCAGGTTCTCCGACGATGCTCCGGC
837 CCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
* * ** ** *
13562053 GATGGTGCCCCAATGAAGAAAAATTTGGTGCCAGCACATGCCCGA-CACCAGCATGTGCTACCGC
1 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC-CCAGCATGTGCTGCCGC
* * *
13562117 AACCCTCGG-TCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAA
65 AACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* ** * *
13562181 TCCGTATGCCTAAGTCAACCCAC-AGAACGAGCGTGCGGGCGCTCAGTCAACCTGAGGGGTGGGA
129 TCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * * * * * * *
13562245 TGCACAAGCTGGGGATGGGCCAGGTCTCCCTCGACGTGCTG-TCGATCTTGTTGCCACAGCTCTC
193 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTACCGCAACCCTC
* ** * *
13562309 TG-TCCGGTCTAATCTTAGACTGGAAATGAACTCTC-TATGCCTAAGCCAACCGACGAAATGAGC
257 -GATCTGGTCCGATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACCGACGAAACGAGC
** * * * *
13562372 GGGTGGGCGAGC-AGGCACTACGCTAGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGACAGGG
320 -GGCAGGCGGGCGA-GCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
13562436 TGCTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
383 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
13562501 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGGTTTCTATTTT
448 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
13562566 TCACAATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
513 TCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCC
* * * * * *
13562631 CCAAACTTGGTAGGCTTGATCCTTGTATTTTTTTTGACAAGCACAAAAAAATTCAGCTAAAACCT
578 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
13562696 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTA
643 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
***
13562761 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGTGGTTTGATGA
708 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* *
13562826 GGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATTGCACATCATGTGCGAACA-CCCC
773 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * *
13562889 CGGCCCCCCCGATCGTCGAAACCACAATGTCGCCAGTCAGGTTCTCCGACGATGCTCCGAC
838 CGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
** * * * * *
13562950 GATGGTGCCCCGGTGAAAAAAAATGCGACACCAGCATATGCTCGAGTCCAGCATGTGCTGCCGCA
1 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * *
13563015 ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAGCTC
66 ACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * *
13563080 CGTATGCCTAAGTCAACTCACGAAACGAGCGTGTGGGCGCTCAGCCGACTAGAGGGGCGGCATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * *
13563145 GCAAGCCGGGGATCGGTCGGGTCCTCCACTATGTGTTGCTGATCCTGCTACTGTAACCCTCAATC
196 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGATC
* * *
13563210 TGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGCAGG
261 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCAGG
* *
13563275 CGGGCGAGCACTACGCTGGCCAAAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTGGTAGGT
326 CGGGCGAGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
***
13563340 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
391 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
13563405 ATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATT
456 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * * *
13563470 TTTGAAACTTTTTGCGGTTTGGGATTTTTTTAAA-TTTTTCAGAAGGAATTTTGGTCCCAAACTT
521 TTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * *
13563534 GGTAGACGTGATCCTCGTAAATTTT-TTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTG
586 GGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
13563598 TACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
650 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
13563663 CAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
715 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* * *
13563728 GGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCACACATCCCGCCCAGCC
780 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCC
* * * * * *
13563793 CCGCCGATCGCCGAAACCTCAATGCCGTCGATCAAGTTCTCTGGCGATGCTCCGAC
843 CC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
* *
13563849 GATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
1 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
** *
13563914 ACCCTCGGTTCGGTTTGATCTTAGACTGGGAATGAACTCCGTGTGCTTAGACTGGGAATGAAAC-
66 ACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG-AACT
* * * ** * *
13563978 CAGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTTAGCTAGCCAGAGTGGCAGGATG
130 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * ** * *
13564043 CGCAAGCTGGGGATCGGCCGGGTCCCCCTCTACGTGGTGCTGATGTTGCTACCGTAGCCCTCGAT
195 CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGAT
* * * * *
13564108 TTGGTTCGATCTTAGACTGGGAATGATCTCCGTATGCCTAAGCTAACCGATGAAACGAGCGGGCG
260 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC-
* * * * **
13564173 GGCGGGCGGGCGGGCACTATGCCGGGTAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTG
320 GGCAGGCGGGCGAGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* **
13564237 GTTGGTGGGTTTAGGCACATCTTCACGTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
385 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
13564302 CATACAATGGTCCCTTAATCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTC
450 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
13564367 ACGATTTTCAAAACTTTTTACGGTTCGGGA-TTTTTTAAACTTTTTTTGGAATGAGTTCTGGCCC
515 ACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAA-TTTTTTCGGAAGGAGTTTTGGCCC
* * * * *
13564431 CAAACTTGGTAGACCTGATCTTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTTAAAACTT
579 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
13564496 GAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTAC
644 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
13564561 TGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGAGGGTGCGAGTTCTCAAGGTTTGATGAG
709 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
*
13564626 GGATAGGGGGCCAATATAAGGGCCAAGT-CCAGGCAACCAT-GCACATCACTGTGCGCACACCCC
774 GGATAGGGGGCCAATATAAGGGCCAAGTACCA-GCACCCATCGCACATCA-TGTGCGCACACCCC
** * * * *
13564689 ACCGTGCCCCCCCGATCAATCGGAAACCCCAATGCTTGCCGATCACGGTGCTCCAGCGATGCTCC
837 -CCG-G-CCCCCCGATC-GCCGG-AACCCCAATGC-CGCCGGTCA-GGTTCTCCGGCGATGCT-C
13564754 CGAC
894 CGAC
* * * **
13564758 GATGGTG-CCCGATGAAGAAAAAT-----TCC-GCAC-T-----AG--CACCA--TGCCCCCGCA
1 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
13564806 ACCCTTGGTCTAC-GTCTGATCTTAGACTCGGGAATGAAC-CCGTATGCTTAGATTGGGAA-GAA
66 ACCCTCGGT-T-CGGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* *
13564868 CTCCGTACTGCCTAAGTCAACCCACGAAACGAGCCGTACGGGTGCTCAGCCGGCCAGAGGGGCGG
128 CTCCGTA-TGCCTAAGTCAACCCACGAAACGAG-CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * * *
13564933 GATGCGCAGTGTCGGGTGATC-GCCAGGTCCCCCTTCTACGTGCCTAGCCGATCCTGGTGCCACA
191 GATGCGCA-AGCCGGG-GATCGGTCGGGTCCCCC-TCTACGTG-CT-GCTGATCCTGCTACCGCA
* * *
13564997 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-AAGAAAA
251 ACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAA
* * * *
13565061 CGAGCGAGCGGATGGGTGGGCGAGCACTACGTTGGCTAGAGAGGCGGGATGCGCAAGCCGTGGAT
315 CGAGCG-GC--A--GGCGGGCGAGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * **
13565126 AGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAACACCATTTTTATGG
375 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
13565191 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
440 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * ** * ** *
13565256 TCTATTTTTTACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTTAAATTTTTT-TTAAGGTG
505 TCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAG
* * * * *
13565320 TTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTGTTTTTTTTGGCATGCACAAAAGAATTCAGC
570 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * **
13565385 TAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTTTGACACTTT
635 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
13565450 AATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
700 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
* *
13565515 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGTGC
765 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
13565580 ACA-CCCCCGGCCCCCCGACCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCT
830 ACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC
*
13565644 GGC
895 GAC
* * * * * **
13565647 GATGGTGCCCCGACGAAGAAAGATGCAGCACCAGCACATGCCCGAGCCGAACATTTGCTGCCATA
1 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * * * *
13565712 ACCCTCGATCCGGTCTGATCTTAGACTAGGATTGAACTCTGTATGCTTAGACTGGGAATGAACTC
66 ACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
13565777 CGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGG-ACTCAGCCGGCCAGAGGGGCGAGATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * * * *
13565841 ACAAGCTGGGGATCGGTTGGGTCCCCCTCTACTTGCTGCCGATCCTACTACTGTAACCCT-TAGT
196 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGA-T
* *
13565905 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCAGGCA
260 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCA
* * * *
13565970 GGCGGGCGTGCTGGCACTACG-TCGGCCAGAAAGACGGGATGCG-AAGCCATGGATCAATAGGGT
324 GGCGGGC--G--AGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
13566033 GGTAGGTGGATTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
384 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
13566098 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
449 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * *
13566163 CATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCC
514 CACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCC
* *
13566228 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTC
579 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
13566293 GAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCTCATTTTAGACACTTTAATGGCTAC
644 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
13566358 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
709 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* *
13566423 GGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCC
774 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * * * * *
13566488 GGCCCCCCCGAACGTCGGAACCCCAAGGTCGTCGGTTAGGTTCTCCGGCGATGCTCTGGC
839 GG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
* *
13566548 GAT-GTCGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCCGC
1 GATGGT-GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * * *
13566612 AACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGAGAATGAACT
65 AACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
13566677 CCGTATGCCTAATTCAACCCACGAAATGAGCGT----GCG-T-A------C------GC----T-
130 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * *
13566719 --C-AGCCGGGGATCGGTCGGGTACCCCTCTGCGTGCTG-TAGATCCTACTGCCGCAACCCTC-A
195 CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTACCGCAACCCTCGA
* * * *
13566779 GTCTGGTCCGATCTTAGGCTGGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACCAGCGGG
259 -TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG
* * *
13566844 CGGACGGGGCGGGCGGGCACTACGCTGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGG
322 C--A---GGCGGGCGAGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
13566909 GTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTGGATGCCAATGCCATTTTTATGGCTTGTAA
382 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * *
13566974 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGATGACCCGTTTTCTATTT
447 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
13567039 TTCACGATTTTTGAAACTTTTTGCGATTC-AGGATTTTTTTAAATTTTTTCGAAAGGAGTTTTGG
512 TTCACGATTTTCGAAACTTTTTGCGGTTCGA-GATTTTTTTAAATTTTTTCGGAAGGAGTTTTGG
* * * * * *
13567103 CCCCAAATTTGGAAGACGTCATCCTTTTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAA
576 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
13567168 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTTAGACACTTTAATGGC
641 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
13567233 TACTGGCAGCAAACCTATAAAATCTCAAATGCCCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGAT
706 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
*
13567298 G-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
771 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * *
13567362 CCCGGCCCTCCCGATCGTCGGAACCCCAATGCCGCCGTTCAGGTTCTCCGGTGATGCTCCGAC
836 CCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
13567425 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
1 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * ** *
13567490 ACCCTCGATTCGGTCCGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTAGGAAAAAACTT
66 ACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
13567555 TGTATGCCTAAGTCAACCCACAAAACGA---T--------T-------------GGGC-GTATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * ** * *
13567595 TC-AGTCGGGGATCGGTCGGGTACCCCTCTACATGCTGCTGATCCTGTTGTCGTAACCCTCGATT
196 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGATC
* * * * *
13567659 TCGTCCGATCTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGG
261 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCAG
* * *
13567724 GCGGGCGGGTGGGCACTACG-TCGGCCTGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTG
325 GCGGGC----GAGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * * * * *
13567788 GTAGGTTGGTTTAGGCATATCTTGACATTTCTGCATGCCAATGCCGTTTTTCTGGCTTTTAAATT
385 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
13567853 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTACTTTTC
450 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
13567918 ACAATTTTGGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTTGGAAGGAGTTATGGCGCC
515 ACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * *
13567983 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTTAGCTGAAAACTCG
580 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
13568048 AAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT
645 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * * *
13568113 GGCAGCAAAACTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATAAGG
710 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* *
13568178 GATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCG
775 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * *
13568243 GCCTTCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGTGATGCTCCGAC
840 GCC-CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
* * *
13568302 GATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
1 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
** * * *
13568367 ACCCTTAGTCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTT
66 ACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
13568432 CGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCACTCAGTCGGCCAGAGGGACGGGATGC
131 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * ** * * * *
13568497 GCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACTGCAACCATCGGTC
196 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGATC
*
13568562 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A-----A--
261 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCAGG
* *
13568619 -GTG-G-G---T--G--GG-C-G-G-G-C--GA-GCGCAAGCCATGGATC-ATAGGGTGGTAGGT
326 CGGGCGAGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * *
13568665 AGGTTTAGGCACATATTCATATTTCTACGTGCTAATGCCATTTTTATGGCTTGTAAATTCATACA
391 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
13568730 ATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
456 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * *
13568795 TTCAAAACTTTTTACGGATCGAGATTTTTTCAAATTTTTTC-AAATGGAGTTTTGGCCCCAAACT
521 TTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACT
* *
13568859 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAATATTCAGCTAAAAACTCGAAGTG
585 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
13568924 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTGGCAG
650 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
13568989 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAG
715 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
*
13569054 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCACCCCGGCC
780 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCC
* **
13569119 CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGT
843 CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
* * * *
13569174 GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGGCACA
1 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* *
13569239 ACCCTCGG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAGACTGGGAATGAACT
66 ACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
13569303 CCGTATGCCTAAGTCAACCCACGAAGCGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATG
130 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * *
13569368 CGCAAGCCAGGGATCGGTCGAGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGGT
195 CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGAT
* * * *
13569433 CTGGTCCAATCTTACACTGGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAACGAGCGGACG
260 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CA
* *
13569498 GGCGGGC-AGGCACCACGC-GGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
324 GGCGGGCGA-GCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** *
13569561 GGTGGGTTTAGTTACATCTTCATAGTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
388 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
13569626 ACAATGGTCCCTTAGGCCTTCACCTGAAGTTTCATGGCAAGATGACTCGTCTTCTATTTTTCACG
453 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
13569691 ATTTTGGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGG-CCCAAA
518 ATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
** *
13569755 CTTGGTAGGTGTGATCCTTGTATTTCTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
583 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
13569820 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTGGC
648 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
13569885 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGAT
713 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
13569950 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
778 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
** * * * *
13570015 CCTTGATCGTCGGAACCCCAATGTCGCCGTTTAGG-T-T----C--T--T-CGAC
843 CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
* * *
13570059 GATAGG-GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCAC
1 GAT-GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
13570123 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAAAGAACT
65 AACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
13570188 CCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAACCGGCCAGAGGGGCGAGATT
130 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * *
13570253 CGCAAGCCGAGGATCGGACGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTATCGCAACCCTCGGT
195 CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGAT
* * * * *
13570318 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACTGACGAAACGAGCGGGCA
260 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCA
* * *
13570383 GGCAGGCGGGCACTACG-TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTA
324 GGCGGGCGAGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
13570447 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGGCATTTTTATGGTTTGTAAATTCAT
388 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
13570512 ACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCTATTTTTCACA
453 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * * *
13570576 ATTTCCAAAACATTTTGCGGTTCGAGATTTTTTAAAATTTATTCGGAAGGATTTTTGGCCCCAAA
518 ATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCC-AA
* *
13570641 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAATTCGAA
582 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
13570706 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATGGCTACCGA
647 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
13570771 CAGCAAACCTGTAAAATCCCAAATGCTCTCTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGA
712 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
*
13570836 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCTCGG
777 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGG
* * ** * * * * *
13570901 ACCCCTGATCGCCGGAACCAAAATGGCGTCGGTCAGGTTCTCCGGTGATGCTTCGGC
841 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
* * *
13570958 GATGGTGGCCCC-AGCGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCA
1 GATGGT-GCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
13571022 CAATCCTCGGTCCGGTCCGATATTAGACTTGGAATGAACTTCGTCTGCTTAGACTGCGAATGAAC
64 CAA-CC-C--T-C-G---G---TT---C--GG--T---C--CG-AT-CTTAGACTGGGAATGAAC
* * ** *
13571087 TCTGTATGCTGAGACTGGGAATGAACTCCGTAAACCTAAGTCAACACACGAAACGAGCGTGCGGG
103 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * ***
13571152 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATTGGGTTCCCCTATGTATGCT
168 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCT
* * * * * * *
13571217 GCCGATCCTGTTGCTGCAACCCTC-AGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGC
233 GCTGATCCTGCTACCGCAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
13571281 CTAAGCCAACCGATGAAACGAGC-G--GGC--G-G-GCACTACGCCGGCCAAAGAGACGAGATGC
297 CTAAGCCAACCGACGAAACGAGCGGCAGGCGGGCGAGCACTACGCTGGCCAGAGAGACGGGATGC
* * *
13571339 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
362 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
13571404 GCCATTTTTATGGCTTGTAAATTCA-ACAATGGTCCCTTAAGCCTTCACGTGAA-CTTCATGGCA
427 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
13571467 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTGCGTTTCGAGATTTTTTTAAATT
492 AGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAATT
* * * *
13571532 TTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGAATGCAC
557 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
13571597 AAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
622 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * * *
13571662 TTTCAGACAGTTTAATGGCTACCGACAGCAAACCTGTAAAATCCCAAATGCTCTCTAAGGGCGTG
687 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
13571727 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCAC
752 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * ** *
13571792 ACATCATGTGTGCACACCCCCTCGGTCCCTCGATCGCCAAAACCCCAATTCCGCCGGTCAGGTTC
817 ACATCATGTGCGCACACCCCC-CGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* *
13571857 TCCGACGATGCTCTGAC
881 TCCGGCGATGCTCCGAC
** * * * * *
13571874 GATGGTGCCCCGGTGAAGGAAAATACGGTACCAGCACATGGCCGAGCCCAGCATGTGCTGCCGTA
1 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
13571939 ACCCTCGG-TCTGGTCCTATCTTAGACT-GGAATGAACTCCGT
66 ACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGT
13571980 TTGCCTAAGC
Statistics
Matches: 8687, Mismatches: 999, Indels: 496
0.85 0.10 0.05
Matches are distributed among these distances:
870 2 0.00
871 410 0.05
872 352 0.04
873 11 0.00
874 2 0.00
875 2 0.00
876 501 0.06
877 651 0.07
878 387 0.04
879 2 0.00
880 4 0.00
881 7 0.00
882 3 0.00
884 4 0.00
885 366 0.04
886 150 0.02
887 237 0.03
888 51 0.01
889 20 0.00
890 34 0.00
891 12 0.00
892 33 0.00
893 65 0.01
894 61 0.01
895 241 0.03
896 311 0.04
897 326 0.04
898 815 0.09
899 1248 0.14
900 314 0.04
901 208 0.02
902 215 0.02
903 379 0.04
904 319 0.04
905 65 0.01
906 35 0.00
907 7 0.00
908 27 0.00
909 14 0.00
910 1 0.00
911 1 0.00
912 1 0.00
913 1 0.00
914 2 0.00
915 57 0.01
916 312 0.04
917 102 0.01
918 110 0.01
919 2 0.00
920 1 0.00
922 4 0.00
924 3 0.00
925 1 0.00
926 198 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
ACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
GCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGATC
TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCAGG
CGGGCGAGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTCGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
Found at i:13564873 original size:25 final size:26
Alignment explanation
Indices: 13564826--13564874 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
13564816 TACGTCTGAT
13564826 CTTAGACTCGGGAATGAACCCGTATG
1 CTTAGACTCGGGAATGAACCCGTATG
*
13564852 CTTAGA-TTGGGAA-GAACTCCGTA
1 CTTAGACTCGGGAATGAAC-CCGTA
13564875 CTGCCTAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 11 0.52
26 6 0.29
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
CTTAGACTCGGGAATGAACCCGTATG
Found at i:13565760 original size:26 final size:26
Alignment explanation
Indices: 13565731--13565783 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13565721 CCGGTCTGAT
* *
13565731 CTTAGACTAGGATTGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13565757 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13565783 C
1 C
13565784 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13566671 original size:26 final size:26
Alignment explanation
Indices: 13566632--13566684 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13566622 CCGGTCCGAT
* *
13566632 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
13566658 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13566684 C
1 C
13566685 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13568415 original size:26 final size:26
Alignment explanation
Indices: 13568386--13568438 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13568376 CCGGTCCGAT
13568386 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
13568412 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
13568438 C
1 C
13568439 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:13569296 original size:26 final size:26
Alignment explanation
Indices: 13569260--13569313 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
13569250 GGTCCGATCT
13569260 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
*
13569286 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
13569312 TA
1 TA
13569314 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:13571114 original size:26 final size:27
Alignment explanation
Indices: 13571046--13571118 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 27
13571036 GTCCGATATT
* * *
13571046 AGACTTGGAATGAACT-TCGTCTGCTT
1 AGACTGGGAATGAACTCTCGTATGCTG
*
13571072 AGACTGCGAATGAACTCT-GTATGCTG
1 AGACTGGGAATGAACTCTCGTATGCTG
13571098 AGACTGGGAATGAACTC-CGTA
1 AGACTGGGAATGAACTCTCGTA
13571119 AACCTAAGTC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 39 0.98
27 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (27 bp):
AGACTGGGAATGAACTCTCGTATGCTG
Found at i:13572935 original size:158 final size:159
Alignment explanation
Indices: 13572624--13572943 Score: 408
Period size: 159 Copynumber: 2.0 Consensus size: 159
13572614 AAGATTAGAC
* *
13572624 AAGATTAGACCGAATCGAGGATTGCGACAGCAGGATCGGCAGCACACAAAGAGGGACCTAACCAA
1 AAGATCAGACCGAATCAAGGATTGCGACAGCAGGATCGGCAGCACACAAAGAGGGACCTAACCAA
* * * * *
13572689 TCCCCGACTTGCGCATTCTGCCCCTCTGGCCGGCTGAGCACTCGCACGCTCGTTTCATGGGTTGA
66 TCCCCGACCTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGA
*
13572754 CTTAGGCATACGGAGTTCATTCCCAGTCT
131 CTTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * * ***
13572783 AAGATCAGACCGAATCAAGGGTTGTGGCAGCAGGATCGGTAGCTCACAGAGAGGGACCTGGTCAA
1 AAGATCAGACCGAATCAAGGATTGCGACAGCAGGATCGGCAGCACACAAAGAGGGACCTAACCAA
* * * * *
13572848 TCCCCGGCCTGCGCATCCCG-CCCTCTGGTCGACTGAGCGCCCGCACGGTCGTTTCGTGGGTTGA
66 TCCCCGACCTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGA
* * *
13572912 GTTAAGCATACGGCGTTCATTCCCAGTGT
131 CTTAAGCATACGGAGTTCATTCCCAGTCT
13572941 AAG
1 AAG
13572944 CATACGGAGT
Statistics
Matches: 136, Mismatches: 25, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
158 66 0.49
159 70 0.51
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
AAGATCAGACCGAATCAAGGATTGCGACAGCAGGATCGGCAGCACACAAAGAGGGACCTAACCAA
TCCCCGACCTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGA
CTTAAGCATACGGAGTTCATTCCCAGTCT
Found at i:13572943 original size:26 final size:26
Alignment explanation
Indices: 13572914--13572964 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13572904 TGGGTTGAGT
*
13572914 TAAGCATACGGCGTTCATTCCCAGTG
1 TAAGCATACGGAGTTCATTCCCAGTG
13572940 TAAGCATACGGAGTTCATTCCCAGT
1 TAAGCATACGGAGTTCATTCCCAGT
13572965 CTCAAATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTG
Found at i:13574735 original size:26 final size:26
Alignment explanation
Indices: 13574699--13574751 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13574689 GTTGACTTAG
* *
13574699 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
13574725 GCATACAGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
13574751 G
1 G
13574752 ATCGCATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13575352 original size:882 final size:885
Alignment explanation
Indices: 13573822--13577464 Score: 4257
Period size: 851 Copynumber: 4.1 Consensus size: 885
13573812 GTTGACTTAG
* * * * * *** * * *
13573822 GCATACGGAGTTCATTCCCAGTCTAGGGTCGAATCAGATTGAGGGTTGCGGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCG-ACCGGACCAAGGGTTGCGACAGCACATGCTAGG
* * * * * **
13573887 CTCGAGCGTGTGCTGGT-CCGTATTTTTCTTCACCGTGGCACCATCGCCGGAGTATCGTTGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCC--AG-A--G-CAGAGA
* * * * *
13573951 ACCTGACTGGCGGTATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCCCATGATGTG
124 ACCTGACCGGCGGCATTAGGGTTCCGACGATC----GGG--G-GGTGGTGTGCGCACATGATGTG
*
13574016 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
182 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13574081 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
247 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
13574146 GGGGACACTTTTTTCAAATGGTCACAAAATGTTGTAGACTTCAAATTTTTAGCTGAATTTTTTTG
312 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
13574211 TGCATGCCAAAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCAAAAACTGTTTTCAAAAA
376 TGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * *
13574276 TATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA-AACATAGTGAAAAATAGAAAATGAGTCGTC
440 AATTTTAAAAAATCCTGAACCGCAAAAAGTTT-AGAAAATAGTGAAAAATAAAAAACGAGTCGTC
*
13574340 TTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
504 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
13574405 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTACCACCTTATCGATTCACGGCTTGC
569 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTACCACCCTATCGATCCACAGCTTGC
* * *
13574470 GCATCCTGTCTCTCTGGCTGGA-GTAGTGCCCGCCCGCCCACCCGCCGGCTCATTTCGTCGATTG
634 GCATCCCGTCTCTCTGGCTCGACGTAGTGCCCGCCCGCCCA--C-CC-GCTCATTTCGTCGGTTG
* * * * *
13574534 GCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATGGGACTAGACTGAGGGTTACGGTAGCAGAA
695 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGAGACTAGACTGAGGGTTGCGGCAGCAGGA
* *** * *
13574599 TCGGCAGCACATAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCAGCT
760 TCGGCAACACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
13574664 GAGCGTCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
825 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13574725 GCATACAGAGTTCATTCCTAATCTAAGATCGCATCGGACCAAGGGCTT-CAACAGCA-ATGCTAG
1 GCATACGGAGTTCATTCCCAATCTAAGATCG-ACCGGACCAAGGG-TTGCGACAGCACATGCTAG
* *
13574788 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCC-G-G-A-A-AACCTG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCAGAGAACCTG
* * *
13574848 ACCGGCGGCATTTGGGTTCCGACAATC-GGGGGTGGTGTGCGCACATGATGTGTGATGGGTGCTG
129 ACCGGCGGCATTAGGGTTCCGACGATCGGGGGGTGGTGTGCGCACATGATGTGAGATGGGTGCTG
* * *
13574912 GTAATTGGCCCTTATAGTGG-CCCCTACCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
194 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
13574976 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-GAAAATAGGCACACTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAAT-GGGACACTTT
* * *
13575040 TTTCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAAA
322 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* *
13575105 AAAAATACAAGGATCACCTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAA
387 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * * *
13575170 TCCCGAACCACAAAAAGTTTCAG-AAATCGTGAAAAATAAAAAACGAGTCGTCTTCCCATGAAAC
452 TCCTGAACCGCAAAAAGTTT-AGAAAATAGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
* * * * *
13575234 TTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTCCAAGCCATAAAAGTGGCATTTGCACGTA
516 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
*
13575299 GAAATATGAAGATGTGCCTAAACCCACCTACCACCC-ATCGATCCACAGCTTGCGCATCCCGCCT
581 GAAATATGAAGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
* * * *
13575363 CTCTGGC-CGACGTAGTGCCCGCCCGCCCA----CTCGTTTCGTAGGTTGGCTTAGGCGTACGGA
645 CTCTGGCTCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGA
* ** * * * *
13575423 GTTCATTCCCAGTCTAAGATTAGACCGGGCTGAGGGTTGCGGCAGCAGGATAGGCAACATACAGA
710 GTTCATTCCCAGTCTAAGATGAGACTAGACTGAGGGTTGCGGCAGCAGGATCGGCAACACATAGA
* * * *
13575488 GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCTGCACGCT
775 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
13575553 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13575599 GCATACGGAGTTCATT-CGAA-C-CAGAT----C-G----AGGGTTGCGACAGCACATGCTTGGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCGACCGGACCAAGGGTTGCGACAGCACATGCTAGGC
* * * *
13575652 TCGGGCATGCGCTGGTGCCGTATTTTTCTTCACCTGGGCACCATCGCCAGAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCA------GAGAA
* * * * * *
13575717 CCTAACCGGCAGCGTTAGGGTTTCGACGATCGGGGGGCTGGGGGGGTGTGCACACATGATGTGCG
125 CCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGG-T-----GGTGTGCGCACATGATGTGAG
* *
13575782 ATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACAC
184 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
13575847 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA------G---T--
249 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
13575901 G-C-C------C-----G-----AAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTTTTTATG
314 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTG
* *
13575947 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAAAT
378 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* *
13576012 TTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATAGTGAAAAA-AAGAAAACGAGTCGTCTTG
443 TTTAAAAAATCCTGAACCGCAAAAAGTTTAGAAAATAGTGAAAAATAA-AAAACGAGTCGTCTTG
* * *
13576076 CCATTAAACTTCATGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
507 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
13576141 TGGCACATAGAAATATAAAGATGTGCCTAAACCCACTACCGCCCTATCGATTCACGGCTTGCGCA
572 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACTACCACCCTATCGATCCACAGCTTGCGCA
* * * ** *
13576206 TCTCGTCTCTTTAGC-CGGTGTAGTGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGG
637 TCCCGTCTCTCTGGCTCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGG
* * * **
13576266 CATATAGAGTTCATTCCTAGTCTAAGATGGGACTAGA-TCGAGGGTTGCCACAGCAGGATCGGCA
702 CATACAGAGTTCATTCCCAGTCTAAGATGAGACTAGACT-GAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
13576330 GCACATAGAGAGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGC
766 ACACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
13576395 CCGCACGCTCATTTTATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
13576450 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATC-GACCGGACCAAGGGTTGCGACAGCACATGCTAGG
* * * * **
13576515 CTCGAGCATGTGCAGGTGCTGCATTTTTCTTCGTCGGGGTGCCATCGCCGGAGCTAAGCTAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCC--AG---AGC-AGAGA
* * * * *
13576580 ACCTGATCGACGGCATTGGGGTTCCAACGATCGAAGGGGCCAAGGGGGTGTGCGCACATGATGTG
124 ACCTGACCGGCGGCATTAGGGTTCCGACGATC---GGGG----GGTGGTGTGCGCACATGATGTG
*
13576645 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
182 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13576710 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCACTAAAGTGTCTGAAAT
247 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-
*
13576775 TGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTATG-TGAATTTTTTT
311 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTTTT
* * * * *
13576839 GTGCAAGCC-AACAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAATTCCAT-CAGAAA
375 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA-AAA
* * * *
13576902 AAATTTTAAAAAATCCTGAACCTCAAAAAGTTTTGAAAATAATGAAAAATAGAAAACGAGTCGTC
439 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTAGAAAATAGTGAAAAATAAAAAACGAGTCGTC
*
13576967 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGG
504 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
13577032 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
569 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACAGCTTG
* * * * * *
13577097 CGCATCCCATCTCTCTGG-TCGATGTAGTGCCTGCCTACTTGCCCGCCAGCTCATTTTGTCGGTT
633 CGCATCCCGTCTCTCTGGCTCGACGTAGTGCCCGCC--C--GCCCACCCGCTCATTTCGTCGGTT
* * * * *
13577161 CGCTTAGGCTTAC-GAGGTTCATTCCTAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAG
694 GGCTTAGGCATACAGA-GTTCATTCCCAGTCTAAGATGAGACTAGACTGAGGGTTGCGGCAGCAG
* * * * * *
13577225 GATCGGTAACACGTAGAGGGGGACCCGACCGATCTCAGGCTTACGCATCCCGCCCCTCTGGCCGA
758 GATCGGCAACACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
13577290 CTGAGCGCCCGCTCGCTTGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
823 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13577353 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGATCAAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCG-ACCGGACCAAGGGTTGCGACAGCACATGCTAGG
* * * * *
13577418 CTCAGGCAAGTGTTCGTGTCGCATTTTTCTTCATCGGGGCACCATCG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG
13577465 TCGGAGCATA
Statistics
Matches: 2343, Mismatches: 288, Indels: 218
0.82 0.10 0.08
Matches are distributed among these distances:
850 13 0.01
851 478 0.20
852 2 0.00
853 1 0.00
854 4 0.00
856 1 0.00
859 1 0.00
860 3 0.00
861 12 0.01
862 50 0.02
863 1 0.00
864 90 0.04
865 133 0.06
866 3 0.00
867 5 0.00
868 1 0.00
869 3 0.00
870 1 0.00
871 7 0.00
872 3 0.00
873 30 0.01
874 201 0.09
875 2 0.00
876 1 0.00
877 1 0.00
878 1 0.00
879 1 0.00
880 46 0.02
881 84 0.04
882 252 0.11
883 163 0.07
884 49 0.02
885 2 0.00
887 2 0.00
892 29 0.01
893 3 0.00
894 201 0.09
895 92 0.04
896 4 0.00
897 1 0.00
899 1 0.00
900 1 0.00
902 25 0.01
903 337 0.14
904 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGACCGGACCAAGGGTTGCGACAGCACATGCTAGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCAGAGAACCTGAC
CGGCGGCATTAGGGTTCCGACGATCGGGGGGTGGTGTGCGCACATGATGTGAGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT
GAACCGCAAAAAGTTTAGAAAATAGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
ATGAAGATGTGCCTAAACCCACTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGG
CTCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
TCCCAGTCTAAGATGAGACTAGACTGAGGGTTGCGGCAGCAGGATCGGCAACACATAGAGGGGGA
CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13576460 original size:26 final size:26
Alignment explanation
Indices: 13576424--13576476 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13576414 CTTGACTTAG
13576424 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13576450 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13576476 G
1 G
13576477 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13577357 original size:26 final size:26
Alignment explanation
Indices: 13577327--13577379 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13577317 GTTGACTTAG
13577327 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13577353 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13577379 G
1 G
13577380 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13580366 original size:898 final size:890
Alignment explanation
Indices: 13578528--13581150 Score: 3522
Period size: 898 Copynumber: 2.9 Consensus size: 890
13578518 TAGATTTGGC
*
13578528 CCCAAACTTGGTAGATGTGATACTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
1 CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAAC
* * *
13578593 TCAAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCCTTTCAAACACTTTAATGGCT
65 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
13578658 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATG
130 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATG
* *
13578723 AGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCACATCATTTGTGCACACCAC
194 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA--TGTGCA-AACAC
* *
13578787 CCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-AG
256 CCCCCCGGCCCCCCGATCGTCGGAA-CCCAATGCCGTCAGTCAGGTTCTCC-GCGATGCTCCGA-
* * * * * *
13578851 CGATGGTGCCTCGATGAAGAAAAATGCCGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGC
318 CGATGGTGCCCCGACGAAGAAAAAT-ACGCACCAACACATGCCAGAGCCCAGCATGTGCTGCCGC
* * * * * *
13578916 AACCCTCGGTCTGGTTTGATCTTATACTGGGAATGAACTCCGTATGCTTACAGTGGGAATGAACT
382 AACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * **
13578981 CTGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCACTCAACCTACCAGAGGGGCGGGATG
447 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAACC-GGCAGAGGGGCGGGATG
* * * * **
13579046 TGCAAGCCGGGGATCGACCGGGTCCCCCTCT-ATTGCTATCGATCCTACTGCCCCAACCCTCAGT
511 CGCAAGCCAGGGATCG-GCGGGTCCCCCTCTGAGTGCTATCGATCCTACTGCTGCAACCCTCAGT
* * * * *
13579110 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGATGAAATGAGCGGGTG
575 CTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCG
* * * * * * * * * * *
13579175 GGTGGACGGGAACTACGTCGGCCAGAAAGGCGGGATACGCAAGCCGTGGATCGATACGGTCGTAG
640 GGCGGGCGGGCATTGC-CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* ***
13579240 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGATATTTTTATGGCTTGTAAATTCATA
704 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATCCCATTTTTATGGCTTGTAAATTCATA
* * * *
13579305 CAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCATGA
769 CAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
** *
13579370 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGGATGGGGTTTTAG
834 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGGGTTTTAG
* *
13579427 CGCCAAATTTGGCAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAA
1 C-CCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAA
* * *
13579492 CTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGC
64 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
13579557 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGATGTGAGTTCTCGAGTTTTGAT
129 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCAAGGTTTGAT
*
13579622 GAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCACACATCATGTGCAAACACCC
193 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCAAACACCC
* * * *
13579687 CCCCGACCCCCCTATCGTCGGAATACCAA-GACCGTCAGTTAGGTTCTCCGACGATGCTCCGACG
258 CCCCGGCCCCCCGATCGTCGGAA-CCCAATG-CCGTCAGTCAGGTTCTCCG-CGATGCTCCGACG
* **
13579751 ATGGTGCCCCAACGAAGAAAAATACGACACCAACACATGCCAGAGCCCAGCATGTGCTGTTGCAA
320 ATGGTGCCCCGACGAAGAAAAATACG-CACCAACACATGCCAGAGCCCAGCATGTGCTGCCGCAA
* * *
13579816 CCCTCGGTCCAGTCCGATCTAAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT
384 CCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT
* * * **
13579881 GTATGCCTAAGTCAACCCACGACACGAGCATGCAGGCGCTCAGTCGGCAGAGGGGCGGGATGCGC
449 GTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAACCGGCAGAGGGGCGGGATGCGC
** * * **
13579946 AAGCCAGGGATCGGTTGGTCCCCCTCTGCGTGCTGTCGATCCTACTATTGCAACCCTCAGTCTGA
514 AAGCCAGGGATCGGCGGGTCCCCCTCTGAGTGCTATCGATCCTACTGCTGCAACCCTCAGTCTGA
* *
13580011 TCCGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
579 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
** * *
13580076 GGTAGGCATTGCACCGGCCAGAGAGACGGGATGTGCAAGCCGTAGATCGATAGGGTGGTAGGTGG
644 GGCGGGCATTGC-CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
13580141 GTTTAGGCACATCTTCATATTTCTATGTGCCAATCCCATTTTTATGGCTCGTAAATTCATACAAT
708 GTTTAGGCACATCTTCATATTTCTATGTGCCAATCCCATTTTTATGGCTTGTAAATTCATACAAT
*
13580206 GGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGATTTCGTTTTCTATTTTTCATGATTT
773 GGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCATGATTT
* **
13580271 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGTATTTTTTA-
837 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGG--GGTTTTAG
*
13580326 CCCAAACTTGGTAGATGTGATCCTTGTACTTTTT-TTGGCATGCACAAAAATATTCAGCTAAAGA
1 CCCAAACTTGGTAGATGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAA
*
13580390 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
64 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
13580455 TACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGAT
129 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCAAGGTTTGAT
* **
13580520 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCACACATCATGTGCGCACACCC
193 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCAAACACCC
* *
13580585 CCCCGGCCCCTCCGATCGTCGGAACCCTAATGCCG-CCGAACAGGTTCT-C-C---G----G-CG
258 CCCCGGCCCC-CCGATCGTCGGAACCC-AATGCCGTCAG-TCAGGTTCTCCGCGATGCTCCGACG
* * * * *
13580639 ATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCCACAA
320 ATGGTGCCCCGACGAAGAAAAATAC-GCACCAACACATGCCAGAGCCCAGCATGTGCTGCCGCAA
* ** * * * *
13580704 CCTTCAATTCGGTCTGATTTTAGATTGGGAATGAACTCCGTATGCTTAGACTGTGAATGAACTCC
384 CCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT
* * * *
13580769 GTCTGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAACCGGCTAGAGGGGCGGGATGCA
449 GTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAACCGGC-AGAGGGGCGGGATGCG
* * * * * *
13580834 TAAG-CAGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACCAATCCTGCTGCTGCGACCCTC-GAT
513 CAAGCCA-GGGATCGG-CGGGTCCCCCTCTGAGTGCTATCGATCCTACTGCTGCAACCCTCAG-T
* * * * **
13580897 CCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGTTGGCG
575 CTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCG
* *
13580962 GGCGGGCGGGCACTATG-CCGGCTAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
640 GGCGGGCGGGCA-T-TGCCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
13581026 GGTGTGTTTAGGAACATCTTCATATTTCTATGTGCCAATCCCATTTTTATGGCTTGTAAATTCAT
703 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATCCCATTTTTATGGCTTGTAAATTCAT
*
13581091 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTT
768 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
13581151 AGGCTGGGAA
Statistics
Matches: 1519, Mismatches: 179, Indels: 62
0.86 0.10 0.04
Matches are distributed among these distances:
888 154 0.10
889 43 0.03
890 251 0.17
891 1 0.00
892 2 0.00
893 1 0.00
896 12 0.01
897 268 0.18
898 511 0.34
899 51 0.03
900 198 0.13
901 27 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACT
CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCAAACACCCCCC
CGGCCCCCCGATCGTCGGAACCCAATGCCGTCAGTCAGGTTCTCCGCGATGCTCCGACGATGGTG
CCCCGACGAAGAAAAATACGCACCAACACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGG
TCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCC
TAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAACCGGCAGAGGGGCGGGATGCGCAAGCCAG
GGATCGGCGGGTCCCCCTCTGAGTGCTATCGATCCTACTGCTGCAACCCTCAGTCTGATCCGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGC
ATTGCCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTATGTGCCAATCCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
TTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGGGTTTTAG
Found at i:13581516 original size:416 final size:416
Alignment explanation
Indices: 13580745--13581566 Score: 1218
Period size: 416 Copynumber: 2.0 Consensus size: 416
13580735 TGAACTCCGT
* * *
13580745 ATGCTTAGACTGTGAATGAACTCCGTCTGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTC
1 ATGCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCATTC
* *
13580810 AACCGGCTAGAGGGGCGGGATGCATAAGCAGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACCAA
66 AACCGGCCAGAGGGGCGGGATGCATAAGCAGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCAA
* ** *
13580875 TCCTGCTGCTGCGACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
131 TCCTGCTACCACAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* ** * * * *
13580940 CAACCAACAAAATGAGTTGGCGGGCGGGCGGGCACTATGCCGGCTAGAGAGATGGGATGCGCAAG
196 CAACCAACAAAACGAGCGGGCGGGAGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCACAAG
* * **
13581005 CCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGAACATCTTCATATTTCTATGTGCCAATCCCAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCAACATCTTCATATTTCTACATGCCAATCCCAT
** *
13581070 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGTAAGACG
326 TTTTATAACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
13581135 ACTCGTTTTCTATTTTAGGCTGGGAA
391 ACTCGTTTTCTATTTTAGGCTGGGAA
* *
13581161 ATGCTTAGACTAG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCATT
1 ATGCTTAGACT-GTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCATT
* * * * * *
13581225 CAGCCGGCCAGAGGTGCGGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCG
65 CAACCGGCCAGAGGGGCGGGATGCATAAGCAGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCA
* *
13581290 ATCCTGCTACCACAACCCTCGGTCCTG-TCCAATCTTAGACTGGGAATGAACTCCGTATGGCTAA
130 ATCCTGCTACCACAACCCTCGATCC-GATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* ** *
13581354 GCCAACCGATGAAACGAGCGGGTGGGAGGGCGGGCACTACGCCGG-TCAGAGAGACGGGATGCAC
194 GCCAACCAACAAAACGAGCGGGCGGGAGGGCGGGCACTACGCCGGCT-AGAGAGACGGGATGCAC
* * *
13581418 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCAACATCTTCATATTTCTACATGCCAATCC
*
13581483 CATTTTTATAACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTATAACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
*
13581548 ACGACTCGTTTTTTATTTT
388 ACGACTCGTTTTCTATTTT
13581567 TCACAATTTT
Statistics
Matches: 361, Mismatches: 42, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
415 1 0.00
416 358 0.99
417 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (416 bp):
ATGCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCATTC
AACCGGCCAGAGGGGCGGGATGCATAAGCAGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCAA
TCCTGCTACCACAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCAACAAAACGAGCGGGCGGGAGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCACAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCAACATCTTCATATTTCTACATGCCAATCCCAT
TTTTATAACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTAGGCTGGGAA
Found at i:13582055 original size:26 final size:26
Alignment explanation
Indices: 13582026--13582078 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13582016 CCAGTCCGAT
13582026 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13582052 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13582078 C
1 C
13582079 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13582488 original size:26 final size:26
Alignment explanation
Indices: 13582443--13582501 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
13582433 AAGACAACTC
* *
13582443 ATTTTCTACTGTTCATGATTTTTGAAA
1 ATTTT-TACGGTTCAGGATTTTTGAAA
* *
13582470 CTTTTTACGGTTCAGGATTTTTTAAA
1 ATTTTTACGGTTCAGGATTTTTGAAA
13582496 ATTTTT
1 ATTTTT
13582502 TCAAAAGGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.10, G:0.12, T:0.54
Consensus pattern (26 bp):
ATTTTTACGGTTCAGGATTTTTGAAA
Found at i:13582491 original size:27 final size:26
Alignment explanation
Indices: 13582444--13582502 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
13582434 AGACAACTCA
* * *
13582444 TTTTCTACTGTTCATGATTTTTGAAAC
1 TTTT-TACGGTTCAGGATTTTTAAAAC
*
13582471 TTTTTACGGTTCAGGATTTTTTAAAAT
1 TTTTTACGGTTCAGGA-TTTTTAAAAC
13582498 TTTTT
1 TTTTT
13582503 CAAAAGGTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 10 0.37
27 17 0.63
ACGTcount: A:0.22, C:0.10, G:0.12, T:0.56
Consensus pattern (26 bp):
TTTTTACGGTTCAGGATTTTTAAAAC
Found at i:13582954 original size:26 final size:26
Alignment explanation
Indices: 13582925--13582977 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13582915 CTGGTCCGAT
*
13582925 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
13582951 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
13582977 C
1 C
13582978 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:13583758 original size:894 final size:888
Alignment explanation
Indices: 13581161--13583790 Score: 3557
Period size: 888 Copynumber: 2.9 Consensus size: 888
13581151 AGGCTGGGAA
* * * * **
13581161 ATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCATTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
* *
13581226 AGCCGGCCAGAGGTGCGGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGA
66 AGCCGGCCAGAGGAGCGGGATGCGTAAGCCGGGGATCGGCTGGGT-CCCCTCTGCGTGCTATCGA
* *
13581291 TCCTGCTACCACAACCCTCGGTCCT-GTCCAATCTTAGACTGGGAATGAACTCCGTATGGCTAAG
130 TCCTGCTACCACAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
13581355 CCAACCGATGAAACGAGCGGGTGGGAGGGCGGGCACTACGCCGGTCAGAGAGACGGG-ATGCACA
194 CCAA-CGACGAAACAAGC--G-GGCA-GGCGGGCACTACGCCGGCCAGAGAGACGGGAATG--CA
*
13581419 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
**
13581484 ATTTTTATAACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
13581549 CGACTCGTTTTTTATTTTTCACAATTTTCAAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTT
382 CGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTT
* * ** * *
13581614 TCAG-AAGGAGTTTTGGCCCCAAACTCAGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAA
446 TTAGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
13581678 ATAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
511 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
13581743 TTAAACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
576 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
13581808 AGTTCTTGAGGATTGATAAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
641 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
13581873 ATCATGTGAGCACACCCCCCGGCCCCACCAATCGTCGGAACCCCAATACCGCCGGTCAAGTTCTC
706 ATCATGTGCGCACACCCCCCAGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * *
13581938 CGGCGATGGTGCC--C--TG-G--TG--AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
770 CGGCGATGCT-CCAGCGATGTGCCCGACAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
* *
13581994 ATGTGCTGCCACAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGT
834 ATGTGCTACCACAACCCTTGGACCAGTCCGATCTTAGACTGGGAATGAACTCCGT
*
13582049 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * **
13582114 AACCGGCCAGAGGAGCGAGATGCGTAAGCTGGGGATCGGTTGGGTGCCCCTCTATGTGCTATCGA
66 AGCCGGCCAGAGGAGCGGGATGCGTAAGCCGGGGATCGGCTGGGT-CCCCTCTGCGTGCTATCGA
* * * * * * * * * *
13582179 TCCTGCTGCTACAACCCTTGGTCTGGTCTGATCTTAGGCTCGGAATCAACTTCGTATACCTAAGT
130 TCCTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
13582244 CAACTGACGAAACGAACGGGTGGGCGGGCAGGCACTACGCCGGCCAAAGAGACGGG-ATGCGCAA
195 CAAC-GACGAAAC-AA---GCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGAAT--GCAA
*
13582308 GCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
13582373 TTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGAC
318 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * ** ** *
13582438 AACTCATTTTCTACTGTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
383 GACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTTT
* * * *
13582503 CA-AAAGG-TGTTTTAGTCCCAATCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
447 TAGAAAGGAT-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
13582566 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCGTT
511 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
13582631 TGAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAAAGGGGTGTG
576 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
13582696 AGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGCAACAGCACCCATCGCAC
641 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
13582761 ACCATGTGCGCACACCCCCCGACCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTTAGGTTCTC
706 ATCATGTGCGCACACCCCCC-AGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * *
13582826 CGGCGATGCTCTAGTGATGGTGCCTCGACGTAGAAAAATGCGACACCAGCGCATGCCCGAGCCCA
770 CGGCGATGCTCCAGCGAT-GTGCC-CGAC-AAGAAAAATGCGACACCAGCACATGCCCGAGCCCA
* **
13582891 ACATGTGCTACCACAACCCTTGGACTGGTCCGATCTTAGACTGGGAATGAACTCCGT
832 GCATGTGCTACCACAACCCTTGGACCAGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
13582948 ATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAATGAGCGAGCGGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * *
13583013 AGCCGGCCAGATGG-GCGGGATGCGCAAGCCAGGGATCGGCCGGGTCTCCCTCTGCGTTCTGTCG
66 AGCCGGCCAGA-GGAGCGGGATGCGTAAGCCGGGGATCGGCTGGGTC-CCCTCTGCGTGCTATCG
* *
13583077 ATCCTACTACCCCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
129 ATCCTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
13583142 CCATTCGACGAAACTAGCGGACAGGCGGGCACTACGTCGG-CAGAGAGACGGGACATGCAAGCCG
194 CCA-ACGACGAAACAAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGA-ATGCAAGCCG
** *
13583206 TGGATCGATAGGGTGGTAGGCCGGCTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
13583271 TATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
13583336 CGTTTTCTATTTTTCACAATTTTCCAAACTTTTTTCGGTTCGGGATTTTTTACAATTTTTTTTGA
387 CGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTA-AATTTTTTTAGA
*
13583401 AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
451 AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
13583466 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
13583531 CACTTCAATGGCTACTAGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
13583596 TTGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
646 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * * * *
13583661 GTGCTTACACCCCCTAGCCCCCCGATCCCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGA
711 GTGCGCACACCCCCCAGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
* *
13583726 TGCTCCAGCGATGCTGCCCCGACAAAGAAAAATACAACACCAGCACATGCCCGAGCCCAGCATGT
776 TGCTCCAGCGATG-TG-CCCGAC-AAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGT
13583791 TTCTGCATGC
Statistics
Matches: 1512, Mismatches: 197, Indels: 60
0.85 0.11 0.03
Matches are distributed among these distances:
887 4 0.00
888 671 0.44
889 7 0.00
890 2 0.00
891 1 0.00
892 2 0.00
893 3 0.00
894 286 0.19
895 271 0.18
896 4 0.00
898 2 0.00
899 256 0.17
900 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGAGCGGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCTCTGCGTGCTATCGAT
CCTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACGACGAAACAAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGAATGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTTAGAAAGGA
TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCAGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
CAGCGATGTGCCCGACAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCAC
AACCCTTGGACCAGTCCGATCTTAGACTGGGAATGAACTCCGT
Found at i:13586122 original size:26 final size:26
Alignment explanation
Indices: 13586083--13586135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13586073 CCGATCCGAT
* *
13586083 CTTAGAGTGGGAATGAACTTCGTATG
1 CTTAGAGTGAGAATGAACTCCGTATG
*
13586109 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGAGTGAGAATGAACTCCGTATG
13586135 C
1 C
13586136 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGAGTGAGAATGAACTCCGTATG
Found at i:13587471 original size:877 final size:871
Alignment explanation
Indices: 13586109--13589716 Score: 4412
Period size: 904 Copynumber: 4.1 Consensus size: 871
13586099 ACTTCGTATG
* * * * *
13586109 CTTAGATTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGCGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
13586174 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATAGGTCATGTACCCCTCTGCGTGCTACCGATTC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGAGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * *
13586239 TACTAGCGCAATCCTCAACCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
131 TACTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
13586304 CCGACGAAACGAGC-GGA---CGGGCGGTG-ACGACGCTGACCAGAGAGATGGGATGCGCAAGCC
196 CCGACGAAACGAGCGGGAGGGCAGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
13586364 GTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCATCTTATTTTTGCGTGCCAATGCTATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCG-ACCAATGCTATTT
*
13586429 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * *
13586494 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGG
390 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA
* * * *
13586559 AAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATACAGAAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAA
** *
13586624 TTCAGGGAAAAACTCGAAGTGTACAAGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
13586689 CACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
13586754 TCGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
13586819 GTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCACAATGCCGCCGGTCGGGTGCTCCGAC
714 GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * ** *
13586883 GGTGCCCCGACGATGGTGTCCTGACGAAGAAAAATACAACACCAGCACATGCCTGAGCCAAGCAT
779 GATGCTCCGACGATGGTG-CCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC-AGCAT
*
13586948 GTGCTACCATAACCCTCGGTCCGGTCTGAT
842 GTGCTACCACAACCCTCGGTCCGGTCTGAT
* * *
13586978 CATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
13587043 CGGCCAGAGGGGCAGGATGCGCAAGCCGGAGATCTGCCGGGTCCCCCTCTATGTGTTGCCAATCT
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGAGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * ** **
13587108 TGCTGCCACAACCTTCGGTCTGGTCTGATCTTAGACTACGAATGAACTCCGTATGCCTAAGGGAA
131 TACTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
13587173 CCAACGAAATGAGCGGGAGGGCAGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGAGGGCAGGC-GG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
13587238 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGC-ACCAATGCT
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGCGACCAATGCT
**
13587302 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACAGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
13587367 CGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
13587432 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTATTTTTCTTGGCATGCAGAAA
451 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAA
* *
13587497 AGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
13587562 TAGACACTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
13587626 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
13587691 TCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTAAGGTTCT
710 TCATGTGCGCACACCCCCC-CGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCT
* * *
13587756 CCGGCGATGCTCTGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGGCC
774 CCGACGATGCTCCGACGATGGTGCCT-GACGAAGAAAAATGCGGCACCAGCACATGCCCGA-GCC
** * *
13587821 AGCATGTG-TTGCAGCAAACCTCGGTCTGGTCTGAT
837 AGCATGTGCTACCA-CAACCCTCGGTCCGGTCTGAT
13587856 CTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAAAGAACTCTGTAACCCTAAGTCAACCC
1 CTTAGACTGGGAATGAAC-TC-----C---G--T--------A---TG----CCTAAGTCAACCC
* * * * * * * *
13587921 ACAAAATGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGACCG
40 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGAGATCGGCCG
* * ** * * * * *
13587986 TGTCCCTCTCTGCGTGCTGTTGATCCTGCTACCGCAACCCTCGGTTTGGT-TCAATCTTAGACTT
105 GGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCAGTCTGGTCT-AATCTTAGACTG
* * * *
13588050 GGAATGAACTCCGTATGGCTTAGCCAACCGACGAAACAAGCGAGCGGACGGGCGGGC-GGGCACT
169 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GGA-GGGCAGGCGGGGCACT
* *
13588114 ACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
230 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
13588179 ATCTTCATATTTTTGCGTTCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
295 ATCTTCATATTTTTGCG-ACCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
13588244 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTAAAACTTTG
359 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTT
* *
13588309 TACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
424 TACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
13588374 CCTTTTATTTTTTTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
489 CCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
13588439 GACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAACGGCTATTGGCAGCAAACCTGTAAAA
553 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * *
13588504 TCTCAAATGCTCTTTAGGGGGGAGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAA
618 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
13588569 GGGCCATGTAGCAGCACCCATCGTACATCATGTGCGCACACCCCCCCCGG-CCCCCCGATCGTCG
683 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGTCG
* * * ** **
13588633 AAAACCCTAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGTGATGGTGCCTTGGTGAAGAAA
747 -AAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC-TGACGAAGAAA
* * * *
13588698 AATGCGGCATCAGTACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTTGGTCTGGTCTGATCT
810 AATGCGGCACCAGCACATGCCCGAGCC-AGCATGTGCTACCACAACCC----TC--G---G-TC-
13588763 TAGACTGGGAATGAACTCCGTAT
863 ----C--GG--T---CT--G-AT
*
13588786 ACTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
13588851 CCGGCCAAAGTGGCGGAATGCGCAAGTC-GAGGATCGGTCGGGT-CCCCTCTGCATGCTGCTGAT
65 CCGGCCAAAGGGGCGGGATGCGCAAGCCGGA-GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* ** * * * *
13588914 CCTACTATCGTAACCCTCAGTCCGGTCTAACCTTAGACTGGGAATGAACTCCATATGCCTAAGCA
129 CCTACTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
13588979 AACCGAGGAAACGAGCGGGCGGGCAGGC-GGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAG
194 AACCGACGAAACGAGCGGGAGGGCAGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
13589043 CTGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-ATTCCAATGCCA
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGA--CCAATGCTA
*
13589107 TTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13589172 GACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTAAAA-TTTT
*
13589236 TTCG-AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTCTTTTGGCATGCACAA
450 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTTTGGCATGCACAA
*
13589300 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
13589365 TCAGACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
13589430 AGTTCTTGAGGTTTCATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCACAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
13589495 ATCATGTGCGCACAACCCCCCCGACCCCACCGATC-ACTGAAACCCCAATGCCGTCGGTCAGGTT
709 ATCATGTGCGCAC-ACCCCCCCGGCCCCCCCGATCGTC-GAAACCCCAATGCCGCCGGTCAGGTT
* * ** *
13589559 CTCCGATGATGCTCCGACGATGGTGCACCGGTGAAGAAAAATGCGGTACCAGCACATGCCCGAGC
772 CTCCGACGATGCTCCGACGATGGTGC-CTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG-
* * * * *
13589624 CCAGCATATGCTGCCGCAACCCTCGGTCCGATCTGGT
835 CCAGCATGTGCTACCACAACCCTCGGTCCGGTCTGAT
** * *
13589661 CTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACG-AACGAGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
13589717 AGGGCGAGTG
Statistics
Matches: 2372, Mismatches: 274, Indels: 182
0.84 0.10 0.06
Matches are distributed among these distances:
869 169 0.07
870 3 0.00
873 17 0.01
874 40 0.02
875 1 0.00
876 85 0.04
877 382 0.16
878 133 0.06
879 8 0.00
881 1 0.00
883 1 0.00
884 1 0.00
885 1 0.00
887 1 0.00
889 1 0.00
890 2 0.00
891 1 0.00
894 1 0.00
896 2 0.00
897 1 0.00
899 3 0.00
900 564 0.24
901 23 0.01
902 4 0.00
903 2 0.00
904 624 0.26
905 241 0.10
906 11 0.00
907 3 0.00
908 7 0.00
909 4 0.00
911 1 0.00
912 1 0.00
914 1 0.00
915 2 0.00
920 1 0.00
922 3 0.00
924 1 0.00
925 1 0.00
927 2 0.00
929 1 0.00
930 4 0.00
931 17 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (871 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAAAGGGGCGGGATGCGCAAGCCGGAGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
TACTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGAGGGCAGGCGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGACCAATGCTATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
TGCTCCGACGATGGTGCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAGCATGTGC
TACCACAACCCTCGGTCCGGTCTGAT
Found at i:13588797 original size:26 final size:26
Alignment explanation
Indices: 13588761--13588811 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13588751 CTGGTCTGAT
13588761 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
13588787 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
13588812 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:13589252 original size:900 final size:895
Alignment explanation
Indices: 13586980--13589685 Score: 3853
Period size: 900 Copynumber: 3.0 Consensus size: 895
13586970 GGTCTGATCA
* *
13586980 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * ** *
13587045 GCCAGAGGGGCAGGATGCGCAAGCCGGAGATCTGCCGGGTCCCCCTCTATGTGTTGCCAATCTTG
66 GCCAGAGGGGC-GGATGCGCAAGCCGG-GATCGGCCGGGT-CCCCTCTGCGTGCTGCTGATCCTG
* * * * * **
13587110 CTGCCACAACCTTCGGTCTGGTCTGATCTTAGACTACGAATGAACTCCGTATGCCTAAGGGAACC
128 CTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCAAACC
* * * *
13587175 AACGAAATGAGCGGGAGGGCAGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
193 GAGGAAACGAGCGGGCGGGCAGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
13587240 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGCA--CCAATGCTA
254 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC--TGCATTCCAATGCTA
**
13587303 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACAGCAAGAC
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
13587368 GACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTT
382 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTT
* * *
13587432 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTATTTTTCTTGGCATGCAGAAA
446 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAA
*
13587497 AGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTT
511 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTT
* * * *
13587562 TAGACACTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAG
576 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGTGTGAG
*
13587627 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACAT
641 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
13587692 CATGTGCGCACACCCCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTAAGGTTCTC
706 CATGTGCGCACACCCCCCCCGG-CCCCCCGATCGACGAAACCCCAATGCCGCCGGTCAGGTTCTC
* ** *
13587757 CGGCGATGCTCTGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGGCCA
770 CGGCGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGA-GCCA
* * * * * *
13587822 GCATGTGTTGCAGCAAACCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCATATGCT
834 GCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACT
* * ** * * * *
13587884 TAGACTGGGAAAGAACTCTGTAACCCTAAGTCAACCCACAAAATGAGTGTGCGGGCGCTCAACCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
13587949 GCCAGAGGGGCGGGATACGCAAGCCGGGGATCGACCGTGTCCCTCTCTGCGTGCTGTTGATCCTG
66 GCCAGAGGGGC-GGATGCGCAAGCC-GGGATCGGCCGGGTCCC-CTCTGCGTGCTGCTGATCCTG
* * * * *
13588014 CTACCGCAACCCTCGGTTTGGT-TCAATCTTAGACTTGGAATGAACTCCGTATGGCTTAGCCAAC
128 CTACCGCAACCCTCGGTCTGGTCT-AATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCAAAC
* * * *
13588078 CGACGAAACAAGCGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
192 CGA-G-GA-AA-CGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
13588143 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTTCCAATGCTAT
253 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCTAT
13588208 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
318 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
13588273 ACTCATTTTCTATTTTTCACAATTTTTAAAACTTTGTACGGTTCGGGATTTTTTAAAATTTTTTT
383 ACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTT
*
13588338 -GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGGACAAAA
447 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAA
13588402 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTC
512 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTC
* * *
13588467 AGACACTTTAACGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGAGTGAG
577 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA-GGGGGTGTGAG
* * * * *
13588532 TTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCATGTAGCAGCACCCATCGTACAT
641 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
13588597 CATGTGCGCACACCCCCCCCGGCCCCCCGATCGTCGAAAACCCTAATGCCGCCGGTCAGGTTCTT
706 CATGTGCGCACACCCCCCCCGGCCCCCCGATCGACG-AAACCCCAATGCCGCCGGTCAGGTTCTC
** * * *
13588662 CGGCGATGCTCCGGTGATGGTGCCTTGGTGAAGAAAAATGCGGCATCAGTACATGCCCGAGCCTA
770 CGGCGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC-A
*
13588727 GCATGTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACT
834 GCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACT
*
13588789 TAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
13588854 GCCAAAGTGGCGGAATGCGCAAGTCGAGGATCGGTCGGGTCCCCTCTGCATGCTGCTGATCCTAC
66 GCCAGAGGGGCGG-ATGCGCAAGCCG-GGATCGGCCGGGTCCCCTCTGCGTGCTGCTGATCCTGC
* * * * * * *
13588919 TATCGTAACCCTCAGTCCGGTCTAACCTTAGACTGGGAATGAACTCCATATGCCTAAGCAAACCG
129 TACCGCAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCAAACCG
*
13588984 AGGAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCTGTGG
194 AGGAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGG
* *
13589049 ATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCTATTTTTAT
*
13589114 TGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
13589179 TTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTCG-AAG
389 TTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTTCGAAAG
* * *
13589243 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTCTTTTGGCATGCACAAAAAAATTC
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTC
* *
13589308 AGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACAC
* * *
13589373 TTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AGGGGGTGTGAGTTCTCG
* * *
13589438 AGGTTTCATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
647 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * **
13589503 CGCACAACCCCCCCGACCCCACCGATC-ACTGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATG
712 CGCACACCCCCCCCGGCCCC-CCGATCGAC-GAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
*
13589567 ATGCTCCGACGATGGTGCAC-CGGTGAAGAAAAATGCGGTACCAGCACATGCCCGAGCCCAGCAT
775 ATGCTCCGACGATGGTGC-CTCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAG-CCAGCAT
* * * *
13589631 ATGCTGCCGCAACCCTCGGTCCGATCTGGTCTTAGACTGGGAATGAACTCCGTAT
838 GTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
13589686 GCCTAAACCA
Statistics
Matches: 1600, Mismatches: 179, Indels: 50
0.87 0.10 0.03
Matches are distributed among these distances:
900 623 0.39
901 14 0.01
902 4 0.00
903 5 0.00
904 621 0.39
905 316 0.20
906 2 0.00
907 2 0.00
908 13 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCGGATGCGCAAGCCGGGATCGGCCGGGTCCCCTCTGCGTGCTGCTGATCCTGCTA
CCGCAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCAAACCGAG
GAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCTATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTTCGAAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCCCGGCCCCCCGATCGACGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
CGACGATGGTGCCTCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAGCATGTGCTGCC
GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACT
Found at i:13590399 original size:26 final size:26
Alignment explanation
Indices: 13590370--13590422 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13590360 CCTGTTCGAT
* *
13590370 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
13590396 CTTAGACTAGGAATGAGCTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
13590422 C
1 C
13590423 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:13592369 original size:26 final size:26
Alignment explanation
Indices: 13592332--13592384 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13592322 GTTGACTTAG
*
13592332 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
13592358 GCATACTG-AGTTCAATCCCAGTCTAA
1 GCATAC-GAAGTTCAATCCCAGTCTAA
13592384 G
1 G
13592385 AGCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:13593294 original size:878 final size:881
Alignment explanation
Indices: 13590984--13594418 Score: 4179
Period size: 878 Copynumber: 3.9 Consensus size: 881
13590974 CATTTCGAAC
* * *
13590984 ACAAGGGTCACGTCTGCCTAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATCCTGA
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
*
13591048 ACCATAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
66 ACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
13591113 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
131 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * * *
13591178 GAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCATGGCTCGCACATCCCGTCTCTCTGGT
196 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGT
* * * * * *
13591243 CGACGTAGTGCCCGCCCGCCTGCCCGCTCTTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTC
261 CGGCATAGTGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
13591308 CCAGTCTAAGATTGGACCAGACTGAGGGTT------GC--G---G-CAGCACGTAGAGGGGGACT
326 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC
* * * *
13591361 CGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGACTGAGCACC-CCAACGCTCGTTTCG
391 CGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCACCTGC-ACGCTCATTTCG
* * * *
13591425 TGGGTCGACTTAGGCATA-GAGAGTTCATTCCTAGTCTAAGTATATGGAGTTCATTCCCAGTCTA
455 TGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATA-CGAGTTCATTCCCAGTCTA
* *
13591489 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCACATT
518 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATT
* * * *
13591554 TTTCTTCACCGAGGCACCATCGTTGGAGCATCATCGGAGAACCTGATCGGCGGCATTGGGGTTCC
583 TTTCTTCACCGGGGCACCATC------G-----TCGGAGAACCTGACCGGCGACGTTGGGGTTCC
*
13591619 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTT
637 GACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-G-CC-T
*
13591684 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATT
698 ATATTGG-CCCCTAT--CTCAT-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
13591749 TTACAGGTTTGCTGCCAGTAG-CATTAAAGTG-TCTGAATTGGGGACACTTTTTTCAAATGGTCA
759 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTGTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
13591812 CAAAATCTTGTACACTTTGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
824 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * *
13591870 ACAAGGATCACGTGTA-C-AGTTTAGGGCCAGAACTCCTTCAGAAAAAATTTTAAAAAATCCCGA
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
* * *
13591933 ACCATAAAAGGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
66 ACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * *
13591998 GAAGGCTGAAGGGACCATTGCAT-AAGTTTACAAGCCATAAAAATTGCATTGGCACGTAGAAATA
131 GAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
13592062 TGAAGATGTGCCTAAACCCACCTA-CA-CCTATCGATCGACAGCTTGCGCATCCCGTCTCTCTGG
195 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
13592125 CCGGCATAGTGCCCGACTGCCCGCCCACTCGTTTCGTCGATTGGCTTATGCATACGGAGTTCATT
260 TCGGCATAGTGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
13592190 CCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCCCGCAAAGGGGGAC
325 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC
** * *
13592255 CCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCT-GTCGGCTGAGCACCCGCACGCTCGTTTCG
390 CCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCACCTGCACGCTCATTTCG
* *
13592319 TAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACTGAGTTCAATCCCAGTCTAA
455 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAA
* * * * *
13592384 GAGCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGAATGTGCTGGTGCCGCATTT
519 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTT
** * * * *
13592449 TTCTTTGCCGGGGCACCATCGTCGGAGAACCTGACCGGTGACGTTGGGGTTCTGATGATTGGGGG
584 TTCTTCACCGGGGCACCATCGTCGGAGAACCTGACCGGCGACGTTGGGGTTCCGACGATCGGGGG
* * * *
13592514 GTC-GGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTT-CC-ATA-TAG-CCCTATCT
649 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGCCTATATTGGCCCCTATCT
* *
13592574 -AT-AACCTTGAGAACTCACACCCCCTTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGT
714 CATAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
13592637 AGCCATTAAAGTGTTGTGAAATGAGGATACTTTTTT-AAATGGTCACAAAATCTTGTACACTTTG
778 AGCCATTAAAGTGTTGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
13592701 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
843 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* **
13592740 ACAAGGATCACGTCTACCAAGATTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTGG
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-G
* * *
13592804 AACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATG
65 AACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
13592869 TGAACGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
130 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
*
13592934 TGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
195 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* *
13592999 TCGGCATAGTAACCGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTAGCTTAGGCATACGGGGTT
260 TCGGCATAGT----GCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * * *
13593064 CATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCAAGATCGACAGCACGTAGAGGG
321 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* *
13593129 GGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCTGCA-GCTCAT
386 GGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCACCTGCACGCTCAT
* * * **
13593193 TTCGTGGATTGACTTAGGCATATGAATTTCATTCCCAGTCCCAGCATACGAAGTTCATTCCCAGT
451 TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGT
* * * * *
13593258 CTAAGATCGGACCAGACCGAAGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGTTGGTGCTGC
515 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGC
* **
13593323 ATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGTAGAACCTAACCGACGGCATTGGGGT
580 ATTTTTCTTCACCGGGGCACCATCGTCGGAG-AAC--C-T-G-ACC--GGCGAC-G--TTGGGGT
*
13593388 TCCGGCGATCGGGGGGCCGGGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
634 TCCGACGATCGGGGGGCC-GGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-G-
*
13593453 CCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGA
695 CC-TATATTGG-CCCCTA--TCTCAT-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
13593518 GATTTTACAGATTTGCTGCCAGTACCCATTAAAGTGTCTG-AAAATGGGGACACTTTTTTCAAAT
755 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TGTGAAATGGGGACACTTTTTTCAAAT
* *
13593582 GCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
819 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
**
13593645 ACAAGGATGGCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
1 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
*
13593710 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA-G----TTCACGT
66 ACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
13593770 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
131 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * *
13593835 GAATATGTGCCTAAAACCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGG-
196 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGT
** * * * *
13593899 CTGGTGTAGTGCCCG---G-CCGCCCGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATT
261 C-GGCATAGTGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
13593960 CCTAGTCTAAGATCGGACCGCACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGAGGGGGAC
325 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC
* * * * *
13594025 CCAACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGTTGAGCACCTGCACACTCATTTCG
390 CCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCACCTGCACGCTCATTTCG
13594090 TGGGTTGAC-T-----TA-G--G--CA-T---A--C---G-----GAGTTCATT-CCAGTCTAAG
455 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAG
* * ** * * * *
13594129 ATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGTGCTCAAGCATGTGCTGCTGCTGTATTTT
520 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTT
** * * * * *
13594194 T-TTCATTGGGGCACAATCGTCGGAGCATTGCCTGAGAACCTGACCGACGGCATTGGGGTCCCGG
585 TCTTCACCGGGGCACCATCGTCGGAG-A--ACCT--G-ACC-G-GCGAC-G--TTGGGGTTCCGA
* *
13594258 CGATAGGGGGTGCCGGGGGGGTGTGCGCACA-GATGTGAGATGGGTGCTGGTACTTGGCCCTTAT
639 CGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-G-CC-TAT
*
13594322 ATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
700 ATTGG-CCCCTAT--CTCAT-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
13594387 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
761 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
13594419 TGGATTAGGC
Statistics
Matches: 2242, Mismatches: 236, Indels: 166
0.85 0.09 0.06
Matches are distributed among these distances:
861 1 0.00
862 1 0.00
863 121 0.05
864 15 0.01
865 62 0.03
866 68 0.03
867 9 0.00
868 22 0.01
869 38 0.02
870 92 0.04
871 22 0.01
872 175 0.08
873 11 0.00
874 44 0.02
875 2 0.00
876 4 0.00
877 1 0.00
878 281 0.13
879 18 0.01
881 40 0.02
882 10 0.00
883 145 0.06
884 27 0.01
885 162 0.07
886 17 0.01
887 3 0.00
888 1 0.00
889 22 0.01
891 3 0.00
892 183 0.08
893 18 0.01
894 156 0.07
895 51 0.02
896 5 0.00
897 3 0.00
898 2 0.00
899 1 0.00
900 138 0.06
902 3 0.00
903 2 0.00
904 66 0.03
905 195 0.09
906 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (881 bp):
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
ACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGT
CGGCATAGTGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCACCTGCACGCTCATTTCGT
GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGA
TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTT
CTTCACCGGGGCACCATCGTCGGAGAACCTGACCGGCGACGTTGGGGTTCCGACGATCGGGGGGC
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGCCTATATTGGCCCCTATCTCA
TAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTTGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
Found at i:13594575 original size:26 final size:26
Alignment explanation
Indices: 13594539--13594591 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13594529 GTTGACTTAG
13594539 GCATACGGAGTTCATTCGC-AGTCTAA
1 GCATACGGAGTTCATTC-CTAGTCTAA
13594565 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13594591 G
1 G
13594592 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13597206 original size:26 final size:26
Alignment explanation
Indices: 13597170--13597222 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13597160 GTTGACTTAG
*
13597170 GCATACGGAGTTCATTCCAAGTTTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
13597196 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
13597222 G
1 G
13597223 ATCAGACTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:13598364 original size:881 final size:877
Alignment explanation
Indices: 13594565--13603887 Score: 11353
Period size: 881 Copynumber: 10.5 Consensus size: 877
13594555 CGCAGTCTAA
* * * *
13594565 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
13594630 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGT-CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * ** * *
13594695 ACCTGATC-AGCGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGATGTGCGCACATAATGT
130 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGG-TGTGCGCACATGATGT
* *
13594759 GCGATGGGTGCTGGTACTTGACCCTTATGTTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13594823 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
13594888 TGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
13594953 GTGCATGCCAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAA
* * * * * *
13595018 AATTTTAAAAAATCTCAAACCG-CAAAGGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGACT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
13595082 TGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
13595147 ATTGGCATGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * *
13595212 GCATCCCGTCTCTCTAGTTGGCGTA--G--T-G-CC-CTC--CCGCCCGCTCGTTTCGTCAGTTG
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCTCGCCCGCCCGGCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
13595268 GCTAAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCAAGGGTT-GGGCAGT-AGG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGTCAGG
* * * * **
13595331 ATCGACAGCACGTAGAGGGGTACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGTCGGT
777 ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
*
13595396 TGAGGGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
13595432 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGGACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * **
13595497 CTCGGGAATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCACTAGAGA
66 CTCGGGCATGTGCTGGT-CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * ** *
13595562 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGCGCCGAGGGGGTGTTCGCACAACATTTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCG-GGGGGTGTGCGCACATGATGTG
** *
13595626 CGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
13595691 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
13595756 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATT-GAGTTTTTAGCTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTT
* * * *
13595820 GTGCATGCCAATAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAA
* * ** *
13595885 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
13595950 TGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
13596015 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
13596080 GCATCCCGTCTCTCTGGCCAACGTAGTGCC-CGCCCGCCC-GCCG--C-CTCGTTTCGTCGATTG
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCTCGCCCGCCCGGCCGCCCGCTCGTTTCGTCGGTTG
** * * *
13596140 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGTGTTGTGGCAG-CAGG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGTCAGG
** * *
13596204 ATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCCGAC
777 ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* *
13596269 TGAGCACCCGCACGCTCGGTTCGTGGGTTGACTTAG
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
13596305 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
13596370 TTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG---CA----C----CATCGCCGGAGA
66 CTCGGGCATGTGCTGGT-CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
13596424 ACCTGACCGATGGCATTGGGGTTCTGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCC-GGGGGGTGTGCGCACATGATGTG
*
13596489 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
13596554 ACGCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-CGCATTAAAGTGTCTGTAA
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-CATTAAAGTGTCTGAAA
* *
13596618 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
13596683 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-TTTGGGGCCAAAACTCCTTCCTAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* *
13596747 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGACTCGTCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
13596812 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCAATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
13596877 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * * * *
13596942 GCATCCTATCTCTCTGGCCG--GTAGAGTCCCCGCCCGCCCGCCCGCCCACTCATTTCGTCGGTT
647 GCATCCCGTCTCTCTGGCCGACGTAGTG-CCTCGCCCGCCCGGCCGCCCGCTCGTTTCGTCGGTT
* * * *
13597005 GGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCGGACCGGACTGAGGGTTGTGGCAG-CAG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGTCAG
* * *
13597069 GATC-AGCAGCACGTAGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCCCGCCCCTCTGGCTG
776 GATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
13597132 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
840 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
13597170 GCATACGGAGTTCATTCCAAGTTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGCAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GA-C---C-GGAC
* * *
13597235 CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTTCCGTATTTTTCTTCATCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG-TCCGCATTTTTCTTCGTCGGGG
* * * * * * * *
13597300 CACCATCGCCAGAGCATCGCCGGAAAACCTGACTGGCGGCATTGGGGTTCTGGCGATCGGGGGGG
104 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGG
* * *
13597365 TCAGGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTA
169 -CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
13597430 TCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * *
13597495 CCAGTAGCAATTAGAGTGTCTGAAATGGGGACAATTTTTTCAACTGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
13597560 TTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTTTACCAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * **
13597625 TTGGGGCCAAAACTCCTTCCTGAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATC
428 TTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
* *
13597690 ATGAAAAATAGAAAATGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
492 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
13597755 TGAATTTACAATCCATAAAAATGGCATTGGCACAG-AGAAATATGAAGATGTACCTAAACCCACC
557 TGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACC
* ** * * *
13597819 TACCACCCTATCGATCCACGACTTGCAAATCTCGTCTCTCTAGCCGGCGTAGTGCCCGTCGCCCG
621 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-TCGCCCG
* **
13597884 CCCGGCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCA
684 CCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
13597949 GATCGGACCGAGGGTTATGACAGTCA-GATCGACAGCACACAGAGGGGGACTCGGCCGATCCCAG
749 GACCGGACCGAGGGTTATGGCAGTCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCG
* * ** * * * *
13598013 GCTTGCGCATCCCACCCCTCTGGTCGGTTGAGCACCCGCACACTCGTTCCGTTGGTTGACTTAG
814 GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
13598077 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
13598142 CTCGGGCATGTGCTGGTCCTGCATTTTTCTTCATCGGGGCACCATCGTCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTCC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
13598207 ACCTGACCGACGGCATTGGTGTTCCGACGATCGGAGGTGCCGAAGGGGGTGTGCACACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCG--GGGGGTGTGCGCACATGATGT
* *
13598272 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
13598337 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** * * *
13598401 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTAGGAATTTTTTGCTGAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
13598466 GTGCATGCCAACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* * **
13598531 AATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
13598596 TGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGGATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
13598661 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCAATCGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * * *
13598726 GCATCCCATCTCTCTAGTCGGCATAGTGCCT---------GTCCACCCACTCGTTTCGTCTGTT-
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCTCGCCCGCCCGGCCGCCCGCTCGTTTCGTCGGTTG
* * *
13598781 GCTTTAGGCATACGGACTTCATTCCCAGTCTAAGATCAGACCGGACGGAGGGTTATGGCTGT-AG
712 GC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGTCAG
* * * *
13598845 GATCGACAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCACCCCTCTGGCAGA
776 GATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
*
13598910 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAG
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
13598947 GCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATCGGACTGACT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G----G----A--C------CGGAC---C-
** * *
13599012 GAGGGTTATGGCAGCACAGGCTGGGCTCGGGCATGTGCTGGCGCCGCATTTTTCTTCG-CTGGGG
41 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG-TCCGCATTTTTCTTCGTC-GGGG
* * *
13599076 CACCATCGTCGGAGCATCGTCGGAGAACCTGACC-AGCGGCATTGGGGTTCCGATGAT-TGATGG
104 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGA-GG
* *
13599139 GGCCGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTTGG-CCTTATATTGGCCCCA
167 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCC
* * * *
13599203 TATCCCTCATCGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAAATTTTACAGGTTTAC
231 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
13599268 TGCCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGACTCAAAATCTTGTAC
296 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
13599333 ACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCCACAAAAATACAGGGATCACGTCTACCAA
361 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * *
13599397 GCTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAA
426 GTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
* * **
13599462 TCATGAAAAATAGAAAATGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAAGACCATTG
490 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
13599527 TATGAATTTACAAGCCGTAAAAATGGCATTAGCGCA--CAGAAATATGAAGATGTGCCTAAACCC
555 TATGAATTTACAAGCCATAAAAATGGCATT-G-GCATGCAGAAATATGAAGATGTGCCTAAACCC
*
13599590 ACCTACCACCCTATCGATCCGCGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCTG
618 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-A-----G--TG
13599655 CCCGTCCGCCCGCCTACCCACCCGTCCGCCTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTA
675 -CC-T-CGCCCG----------C--CCG---G-CCG----CCCGCTCGTTTCGTCGGTTGGCTTA
* ** * * *
13599720 GGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGAAGT-AGGATCGA
717 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGTCAGGATCGA
* * ** **
13599784 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCAAGCCCCTCTGGCCGGTTGAGC
782 CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* *
13599849 GCCCGCACACTCGTTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
847 GCCCGCACGCTCGTTT--C--G-TG-----GG--T--TGA---C-TT---AG
13599901 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* * * *
13599966 CTGGGCTCGGGCTTGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCAGCGCC
61 CTGGGCTCGGGCATGTGCTGGT-CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC
** * * *
13600031 AAAGAAACCTGACCGGCGGCATTGGGGTTTCCG-CGAACGGGGGGGCCGGGAAGGGGTGTGCGCA
125 GGAG-AACCTGACCGACGGCATTGGGG-TTCCGACGATCGGAGGGGCC-GG--GGGGTGTGCGCA
* * * *
13600095 CATGATGTGCGATGGGTTCTGGTACTTGGCCTTTATATTGGTCCCCTACCCCTCATCAAACCTCG
185 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
13600160 AGAACTGACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGT
250 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
13600224 GTCTGAAATTGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGA
315 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
**
13600289 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCCT
380 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * *
13600354 TCCGAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
445 TCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
13600419 GTCGTCTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
510 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
13600484 AAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
575 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** *
13600549 GGCTTGCGCATCCCGTCTCTCTGACTGACGTAGTGCC-CGCCCGCCCACCCGCCCGCTCATTTCG
640 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCGCCCGCCCGGCCGCCCGCTCGTTTCG
* * * * * *
13600613 TCGGTTGGCTTAGGCTTACGGAGTTCATTCCCAGCCTAAGATCAGACTGGATCGAGGGTTACGGT
705 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGC
* * * * * *
13600678 AG-CAGGATC-AGCAGCAAGCAAAGGAGGACCTGACCGATCCCCGGCTTGGGCAT-CC-CCCCTC
770 AGTCAGGATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
13600739 TAGCCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGAGTTAG
834 TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * *
13600783 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAAAGCACGTACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * * *
13600848 CTCGAGCATGTGCTGGTGTCGTAATTTTCTTCCCCGGGGCACCATC-ACTGGACCATCACCGGAG
66 CTCGGGCATGTGCTGGT-CCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAG
* * *
13600912 AACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCC-GGGGGGTGTGCGCACATGATGT
13600977 GCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13601041 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGT-TCGAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAA
*
13601105 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
13601170 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
*** *
13601235 AATTTTAAAAAATCTCGAATTATAAAAAGGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTC
452 AATTTTAAAAAATCTCGAACCGTAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
13601300 TTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
13601365 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
13601430 CGCATCCCGTCTCTCTGGCTGACGTAGTGCCT-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCGCCCGCCCGGCCGCCCGCTCGTTTCGTCGGTT
* * * ** * *
13601494 GGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACTGGTTCGAGGATTATGGCA-CCAG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGTCAG
* * * * * * * * * **
13601558 GATCGGCAGCAAGCAAAGGAGGACCTGACTGATCCCTGGCTTGGGCAT-CC-CCCCTCTAACCGA
776 GATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * *
13601621 TTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAG
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
13601658 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTTCCAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---A--T-C-G-----GACCGGACC-GA-
* * * *
13601723 CGAAGGTTGCGGCAGCATATGCTGGGCTCGGGGATGTGCTGGTGTCACATTTTTCTTCGTCGGGG
43 -G--GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT-CCGCATTTTTCTTCGTCGGGG
*
13601788 CACCATCGTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGG
104 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGG
* * * *
13601852 CCGGGGGGTGTGCGCAGATGATGTACGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCCAT
169 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
13601917 CCCTCATCAAACCTTGAGAACTCACACCTCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
234 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
13601982 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
299 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
13602047 TTGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAAGAAAAATAAAAGGATCACGTCTGCCAAGTT
364 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
13602112 TAGGGCCAGAAA-TCCTTTCAAAAAATTTTTAAAAAATCCCGAACCTTAAAAAGTTTCAGAAATC
429 TGGGGCCA-AAACTCCTTCCAAAAAA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
*
13602176 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTA
492 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
13602241 TGAATTTACAAGCCATAAAAATGGCATTGGCAT-CTAGAAATATGAAGTTGTGCCTAAACCCACC
557 TGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACC
* * ** * * *
13602305 TACCACCGTATCTATCCA-GGCTTATGAATCCCGTCTCTCTGGCCGGCGCAGTGCC-CGCCCGCC
621 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCGCCCGCC
* * * * * *
13602368 CGCCCGCCTGCCTGCTCATTTTGTCGGTTGGCTTAGGCATACGAAGTTTATTCCCAGTCCAAGAT
686 CG---GCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * * * * **
13602433 TGGACCGGACCAAAGGTTGTGGCAG-CAGAATGGACAGCACGCAGA-GGGGACTCGGTTGATCCC
747 CAGACCGGACCGAGGGTTATGGCAGTCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCC
* * * * * *
13602496 CAGCTTGCGCATGCCGCCCCTCTTGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTA
812 CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
13602561 G
877 G
* * ** * *
13602562 GAATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTG-GAACAGCATATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG-GCAGCACATGCTGG
* * * * *
13602626 GCCCGGGCATGTGTTGGTGCCGCATTTTTCTTTG-CTGGGGCACCATCGCCGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGT-CCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGA
** *
13602690 GAACCTGACCGGTGGCATTGGGGTTCCGACGATCGG-GCGGGCCGGCTGGGTGTGCGCACATGAT
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAG-GGGCCGG-GGGGTGTGCGCACATGAT
*
13602754 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
13602819 CGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * * *
13602884 AATAGGGATAATGTTTTCAAATGGTCACAAAATTTTATACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
13602949 TTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCGAGTTTGGGGTCAAAAATCCTTTCAAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAA
* * ** * *
13603014 AAAATTTTTAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCAT
450 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
13603079 TTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
13603144 GCATTGGCACACAGAAATATGAAGATGTGCGTAAACCCACTTACCACCCTATCGATCCACGGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
13603209 GCGCATCCCGTCTTTCTAGCTGACGTA--G--T-GCCCG--C--CCGTCCGCTCGTTTCATCGAT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCGCCCGCCCGGCCGCCCGCTCGTTTCGTCGGT
** * * **
13603265 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTACGATAGT-A
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGTCA
* * * *** * *
13603329 GGATCAACAGCACGTAGAGGGGGACCCGGTCGATCCTTAGCTTGCACATCCC-CCCCTCTAGCCG
775 GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
13603393 ATTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAG
840 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
13603431 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCAATCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A----C---C---G----GACC-GA-
* * * *
13603496 CGAAGGTTGCGGTAGCACATCCTGGGCTCGGGCATGTGCTGGTGC-CATTTTTTTTTCGTCGGGG
43 -G--GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTCCGCA-TTTTTCTTCGTCGGGG
* * * *
13603560 CACCA---T-----CAT---CGGAGAACCTGATCGATC-GCATTGAGGTTCCGACGATC-AAGGC
104 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGAGGG
* *
13603612 GTCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
168 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
13603677 TCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
13603742 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
13603807 TTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACAAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
13603872 TTGGGGCCAAAACTCC
428 TTGGGGCCAAAACTCC
13603888 ATCACCGGAA
Statistics
Matches: 7389, Mismatches: 780, Indels: 560
0.85 0.09 0.06
Matches are distributed among these distances:
860 5 0.00
861 2 0.00
862 278 0.04
863 241 0.03
864 1 0.00
865 83 0.01
866 151 0.02
867 376 0.05
868 186 0.03
869 149 0.02
870 224 0.03
871 5 0.00
872 61 0.01
873 240 0.03
874 247 0.03
875 400 0.05
876 40 0.01
877 117 0.02
878 107 0.01
879 13 0.00
880 420 0.06
881 776 0.11
882 91 0.01
883 42 0.01
884 2 0.00
885 4 0.00
886 7 0.00
887 2 0.00
888 1 0.00
889 3 0.00
890 6 0.00
891 69 0.01
892 3 0.00
893 340 0.05
894 141 0.02
895 149 0.02
896 10 0.00
897 2 0.00
898 7 0.00
899 81 0.01
900 375 0.05
901 131 0.02
902 310 0.04
903 336 0.05
904 64 0.01
905 116 0.02
906 110 0.01
907 80 0.01
909 3 0.00
913 2 0.00
915 1 0.00
925 7 0.00
928 2 0.00
929 4 0.00
931 1 0.00
933 145 0.02
934 77 0.01
935 34 0.00
936 10 0.00
937 318 0.04
938 140 0.02
943 2 0.00
944 1 0.00
945 1 0.00
946 1 0.00
947 1 0.00
950 2 0.00
951 2 0.00
954 3 0.00
957 1 0.00
958 2 0.00
959 25 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (877 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCTCGCCCGCCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGTCAGGATCG
ACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:13598983 original size:26 final size:26
Alignment explanation
Indices: 13598947--13598999 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13598937 GTTCACTTAG
* *
13598947 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
*
13598973 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
13598999 G
1 G
13599000 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:13599667 original size:16 final size:16
Alignment explanation
Indices: 13599646--13599699 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
13599636 CCGACGTAAT
*
13599646 GCCCGCCTGCCCGTCC
1 GCCCGCCTGCCCGCCC
* *
13599662 GCCCGCCTACCCACCC
1 GCCCGCCTGCCCGCCC
*
13599678 GTCCGCCTGCCCGCCC
1 GCCCGCCTGCCCGCCC
*
13599694 ACCCGC
1 GCCCGC
13599700 TCGTTTCGTC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.06, C:0.65, G:0.20, T:0.09
Consensus pattern (16 bp):
GCCCGCCTGCCCGCCC
Found at i:13599680 original size:20 final size:20
Alignment explanation
Indices: 13599655--13599698 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
13599645 TGCCCGCCTG
*
13599655 CCCGTCCGCCCGCCTACCCA
1 CCCGTCCGCCCGCCCACCCA
* *
13599675 CCCGTCCGCCTGCCCGCCCA
1 CCCGTCCGCCCGCCCACCCA
13599695 CCCG
1 CCCG
13599699 CTCGTTTCGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.07, C:0.66, G:0.18, T:0.09
Consensus pattern (20 bp):
CCCGTCCGCCCGCCCACCCA
Found at i:13599909 original size:26 final size:26
Alignment explanation
Indices: 13599880--13599932 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13599870 GTTGACTTAG
13599880 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13599906 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13599932 G
1 G
13599933 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13601688 original size:26 final size:26
Alignment explanation
Indices: 13601658--13601710 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13601648 GTTGACTTAG
13601658 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
13601684 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13601710 G
1 G
13601711 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13602138 original size:900 final size:892
Alignment explanation
Indices: 13600783--13603883 Score: 3999
Period size: 880 Copynumber: 3.5 Consensus size: 892
13600773 GTTGAGTTAG
* * * * *
13600783 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAAAGCACGTACTAGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGCACATGCTGGG
* * * ** * * * *
13600848 CTCGAGCATGTGCTGGTGTCGTAATTTTCTTCCCCGGGGCACCATCACTGGACCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCTC-GGAGCATCGCTGGAGA
* *
13600913 ACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTG
13600978 CGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
13601042 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGT-TCGAAA
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAA
13601106 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTT
* * * *
13601171 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCCTTCCGAAAA
386 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTTCAAAAA
* *
13601236 ATTTTAAAAAATCTCGAATTATAAAAAGGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCT
450 ATTTTAAAAAATCTCGAACT-TAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
13601301 TGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
513 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
13601366 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
578 ATTGGCAC-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
13601431 GCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
642 GCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* *
13601496 CTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACTGGTTCGAGGATTATGGCACCAGGAT
707 CTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACTGGATCGAGG-TTATGGCAGCAGGAT
* * * * *
13601561 CGGCAGCAAGCAAAGGAGGACCTGACTGATCCCTGGCTTGGGCAT-CCCCCCTCTAACCGATTGA
771 CGGCAGCACGCAGAGG-GGACCTG-CTGATCCCTAGCTTGCGCATCCCCCCCTCTAGCCGATTGA
* *
13601625 GCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13601684 GCATATGGAGTTCATTTCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCATATGCTGGG
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGCACATGCTGGG
* *
13601749 CTCGGGGATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
65 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCGCTGGAGA
* *
13601814 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAGATGATGTACG
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
13601879 ATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTTGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
13601944 CTCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
13602009 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTG
* * * *
13602074 CATGCCAAGAAAAATAAAAGGATCACGTCTGCCAAGTTTAGGGCCAGAAATCCTTTCAAAAAATT
389 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAATCCTTTCAAAAAA-T
* *
13602139 TTTAAAAAATCCCGAACCTTAAAAAGTTTCAGAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
452 TTTAAAAAATCTCGAA-CTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
13602204 CATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
516 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * ** *
13602269 GGCATCTAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCGTATCTATCCA-GGCTTATGAA
581 GGCA-CTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
13602333 TCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCGCCCGCCTGCCTGCTCATTTTGTCGGTTG
645 TCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCCGCCCG-C--CC-GCTCGTTTCGTCGGTTG
* * * * * * * *
13602398 GCTTAGGCATACGAAGTTTATTCCCAGTCC-AAGATTGGACCGGACCAAAGGTTGTGGCAGCAGA
706 GCTTAGGCATACGGAGTTCATTCCCAG-CCTAAGATCGGACTGGATC-GAGGTTATGGCAGCAGG
* * * * * * **
13602462 AT-GGACAGCACGCAGAGGGGACTCGGTTGATCCCCAGCTTGCGCATGCCGCCCCTCTTGTCGGC
769 ATCGG-CAGCACGCAGAGGGGAC-CTGCTGATCCCTAGCTTGCGCAT-CCCCCCCTCTAGCCGAT
* *
13602526 TGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
831 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
13602588 G-AT--TG-G---A---C---C----A--A-ACC-GA--G--GGTTG-GAACAGCATATGCTGGG
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAAGGTTGCG-ACAGCACATGCTGGG
* * * * *
13602627 CCCGGGCATGTGTTGGTGCCGCATTTTTCTTTG-CTGGGGCACCATCGCCGGAGCATCG-TCGGA
65 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTC-GGGGCACCATC-TCGGAGCATCGCT-GGA
** *
13602690 GAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGCGGGCCGGCTGGGTGTGCGCACATGATG
127 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGG-GGGGTGTGCGCACATGATG
*
13602755 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
13602820 GCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * * * *
13602885 ATAGGGATAATGTTTTCAAATGGTCACAAAATTTTATACACTTCGAGTTTTTAGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTT
* * *
13602950 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCGAGTTTGGGGTCAAAAATCCTTTCAAAA
385 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAATCCTTTC-AAA
* * * ** * * *
13603015 AAATTTTTAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATT
448 AAATTTTAAAAAATCTCGAA-CTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
13603080 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
13603145 CATTGGCACACAGAAATATGAAGATGTGCGTAAACCCACTTACCACCCTATCGATCCACGGCTTG
577 CATTGGCAC-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
13603210 CGCATCCCGTCTTTCTAGCTGACGTA--G--T----GCCCGCCCGTCCGCTCGTTTCATCGATTG
641 CGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * ** *
13603267 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTACGATAGTAGGA
706 GCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACTGGATCGA-GGTTATGGCAGCAGGA
** * * * * *
13603332 TCAACAGCACGTAGAGGGGGACCCGGTCGATCCTTAGCTTGCACATCCCCCCCTCTAGCCGATTG
770 TCGGCAGCACGCAGA-GGGGACCTGCT-GATCCCTAGCTTGCGCATCCCCCCCTCTAGCCGATTG
*
13603397 AGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
13603457 GCATACGAAGTTCATTCTCAATCTAAGATCAGACCGGACCGAAGGTTGCGGTAGCACATCCTGGG
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGCACATGCTGGG
*
13603522 CTCGGGCATGTGCTGGTG-C-CATTTTTTTTTCGTCGGGGCACCA--T-----CAT--C-GGAGA
65 CTCGGGCATGTGCTGGTGTCGCA-TTTTTCTTCGTCGGGGCACCATCTCGGAGCATCGCTGGAGA
* * ** * * *
13603575 ACCTGATCGATC-GCATTGAGGTTCCGACGATCAAGGCGTCAGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
13603639 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13603704 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
13603769 GGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGT
* *
13603834 GCATGCCAAAAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAA
388 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
13603884 CTCCATCACC
Statistics
Matches: 1915, Mismatches: 222, Indels: 147
0.84 0.10 0.06
Matches are distributed among these distances:
868 2 0.00
869 145 0.08
870 25 0.01
873 10 0.01
876 1 0.00
877 3 0.00
878 106 0.06
879 9 0.00
880 420 0.22
881 276 0.14
882 6 0.00
883 37 0.02
886 4 0.00
887 1 0.00
889 1 0.00
890 4 0.00
891 2 0.00
893 4 0.00
894 18 0.01
895 33 0.02
896 1 0.00
897 1 0.00
899 82 0.04
900 380 0.20
901 163 0.09
902 28 0.01
903 79 0.04
904 74 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCGCTGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTTCAAAAAATTTTA
AAAAATCTCGAACTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCTGACGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGCCTAAGATCGGACTGGATCGAGGTTATGGCAGCAGGATCGGCAGCACG
CAGAGGGGACCTGCTGATCCCTAGCTTGCGCATCCCCCCCTCTAGCCGATTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13603460 original size:26 final size:26
Alignment explanation
Indices: 13603431--13603483 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13603421 GTTGACTTAG
* *
13603431 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
13603457 GCATACGAAGTTCATTCTCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
13603483 G
1 G
13603484 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:13604060 original size:26 final size:26
Alignment explanation
Indices: 13604022--13604071 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13604012 CCGGTCTGAT
* *
13604022 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13604048 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
13604072 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13604954 original size:26 final size:26
Alignment explanation
Indices: 13604918--13604999 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
13604908 CTGGTCTGAT
13604918 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13604944 CTTAGACTGGGAATGATCTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13604970 GTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13604996 CTTA
1 CTTA
13605000 AGTCAACCAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13605863 original size:26 final size:26
Alignment explanation
Indices: 13605834--13605886 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13605824 CCGATCTGAT
13605834 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13605860 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13605886 C
1 C
13605887 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13607190 original size:901 final size:900
Alignment explanation
Indices: 13603893--13607854 Score: 4881
Period size: 890 Copynumber: 4.4 Consensus size: 900
13603883 ACTCCATCAC
** ** * * * **
13603893 CGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGTGATAGTGCCCCGGTGAAGAA
1 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGACGAAGAA
* * * ** *
13603958 AAATTCGGCACCAAAACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCGGTCTGATC
66 AAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGTCTGATC
* *
13604023 TTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTAAGCCTAAGTCAACCCA
131 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
** * ** **
13604088 TAAAA-TGAGCGTATGGGTGCTCAGCCGGCCAGAGGGGC-GGAATGTGCAAGCTGGGGATCGGCT
196 TAAAACT-AGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGG-ATGCGCAAGCCAGGGATCATC-
** ** * * * ** *** *
13604151 AAGTCCCTTTCTGCGTGCTGTCGATCCTGCCGTTGCAACCCTCATTCTAATCCAATCTTAGACTG
258 GGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTAATCTTAGACTG
* * * * *
13604216 GGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGAGCGGGCAGATGGCGGGCACTAT
323 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGAGGGCGGGCACTAC
* * * * *
13604281 GTCGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGATGGTAGGTGGGTTTTGGCACAT
388 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
** *
13604346 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGC
453 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * *
13604411 CTTCACGTGAAGTTTCATGGCAAGGTGACTCATTTTCTATTTTTCACCATTTTCGAAACTTTTTG
518 CTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTA
* ** ** * * *
13604476 TGGTTCGAGATTTTTTATTATTTTTTCTTAAGGAGTTTTGGCCCCAAACTTGGCAGACTTGATCC
583 CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
13604541 TT-T-TTTTT-TT--TATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
648 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGA
* * *
13604601 CCAATCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACC
713 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
13604666 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGACAATATAAAG
778 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
** * *
13604731 GCCAAGTAGTAGCACCCATCGCACATCATGTGTGCACACCCCCTGGCCCCCCGATCGT
843 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGT
* * *
13604789 CGGAACCCCAATGCCGTCGATCAGGTTCTCCGATGATGCTCCAGCGATGGTGCCCCAACGAAGAA
1 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGACGAAGAA
* * * * **
13604854 AAATGCAGCACCAACACATGCTCGAGCCTAGCTTGTGCTATCGCAACCCTCGGT-CTGGTCTGAT
66 AAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCT-GTCTGAT
13604918 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGATCTCCATATGGTTAGACTGAGAA
130 CTTAGACTGGGAATGAACTCCGTATGC-T----T----A-GA----C-------T--A--G-GAA
* * * * * *
13604983 TGAACTCCGTATGCTTAAGTCAACCAACAAAACGT-GCGTGCGGGTGCTCAACCGACTAGAGGGG
169 TGAACTCCGTATGCCTAAGTCAACCCATAAAAC-TAGCGTGCGGGTGCTCAGCCGGCCAGAGGGG
* * * * * * * *
13605047 CAGGATGCGTAAGCCGGGGATCGGTCGGGTCTCTCTCTACGTGCTATCGATCTTACTGCTGCAAC
233 CAGGATGCGCAAGCCAGGGATC-ATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCTGCAAC
* * * * * *
13605112 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAGTTCGTATGCCTAAGCCAACAGACGAAATGG
297 CCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
*
13605177 GCGGGCGGGC--A-GGCGGACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
362 GCGGGCGGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
13605239 AGGGTGGTAGGTGGGTTTAGGCACAGCTTCATATTT-T-TGCATGCCAATGCCATTTTTATGGCT
427 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG--TGCCAATGCCATTTTTATGGCT
* * * *
13605302 TTTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTC
490 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTC
* * * *
13605367 TATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTCTCAGAAGGAGTT
555 TATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGA-TT
* * *
13605432 TTAGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAACATTCAACT
619 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACT
* *
13605496 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCATACACTTTA
684 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
13605561 ATGACTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCAAAGT
749 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
* *
13605626 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCACACATCATGTGCGCA
814 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
13605691 CA--------CCCCCCGATCG-
879 CACCCCCCGGCCCCCCGATCGT
* * * * *
13605704 CTGGAACCCCAATGCCGCCAGTCAGGTTCTCCAGTAATGCTCCGGCGATGGTGCCCCGACGAAGA
1 C-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGACGAAGA
* *
13605769 AAAATACAGCACCAACACGTGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCC-GATCTGA
65 AAAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTG-TCTGA
* *
13605833 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
129 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
13605898 CATGAAA-TAAGCGTGTC-GGTGCTCAGCCGGCCAGAGGGTCGGGATGCACAAGCC-GGAGATCG
194 CATAAAACT-AGCGTG-CGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGG-GATC-
* * * * *
13605960 ATCGGGTCCCCCTCTACGTGCTATCAATCCTGTTGCTGCAACCCTTGGTCTGGTCTAATCTTAGA
255 ATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTAATCTTAGA
* * * * * *
13606025 CTGGTAATGAACTCCGTATGTCTAAGCCAACCAACGAAACGAACTGGCGGAC---GGGCGGGCAC
320 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGAGGGCGGGCAC
*
13606087 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCA
385 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
13606152 CATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
450 CATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
13606217 AGCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
515 AGCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTT
* * * * *
13606282 TTACGGTTTGAGATTTTTTTAATTTTTTTC-GAAAGGATTTTTGCCCCCAAACATGGTAGACGTG
580 TTACGGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGATTTTTGGCCCCAAACTTGGTAGACGTG
* * *
13606346 ATCCTTATATTTTTGTTGGCACGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTT
644 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTT
* * *
13606411 GTGACCATTTGAAAAAAATGTCCCCTTTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAA
709 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
13606476 AATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATAT
774 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
13606541 AAGGGCCATGTACTAGCACCCATCGCACATCATGTACGCACACCCCCCGGCCCCCCCGATCGT
839 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGT
** * * *
13606604 CAAAACCCTAATGCCGTCGGTCAGGTTCTCCGGTGATG-TTCAGCGAGGGTGCCCCGACGAAGAA
1 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGACGAAGAA
* * * * *
13606668 AAATGCAGCACCAACACATGCCCAAGCCCGGCATGTGCTGCCGTAACCCTCGGTCCTGTCCGATC
66 AAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGTCTGATC
* *
13606733 TTAGACCGGGAATGAACTCCAT-TAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
131 TTAGACTGGGAATGAACTCCGTAT-GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
13606797 ATGAAACTAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCACGATGTGCAAGCCAGGGATCTATCG
195 ATAAAACTAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATC-ATCG
* * * ** * * * **
13606862 AGTCCCCCTCTACATGCTGTCGATCTTGCTATTGTAA-CCTCAGTCCGGTCTGATCTTAGTTTGG
259 GGTCCCCCTCTACGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTAATCTTAGACTGG
**
13606926 GAATGAACTCTATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGGGCACTAC
324 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGA-GGGCGGGCACTAC
** * *
13606991 GTTGGCCAGAGAGACGGGGTGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
388 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
13607056 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGC
453 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
13607121 CTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
518 CTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTA
* * * * **
13607186 CGGTTCAAAATTTTTTAAAATTTTTTCAGAAGAAATTTTGGCCCCAAACTTGGTAGACAAGATCC
583 CGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
13607251 GTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
648 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGA
* *
13607316 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
713 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* ** *
13607381 TCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGTCAATATAAGG
778 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
13607446 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCGGCCCCCCCGATCGC
843 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGG-CCCCCCGATCGT
*
13607507 CGGAACCCCAATGCCGTCGGTTAGGTTCTCC---G--G-T-----GATGGTGCCCCGACGAAGAA
1 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGACGAAGAA
** ** *
13607561 AAATAC-GACACCAACACATGTTCGAGCCCAGCATGTGCTGCCAAAACCTTCGGT-CTCGT-TCG
66 AAATACAG-CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCT-GTCT-G
* * *
13607623 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTACGCCTAAGTCAAC
128 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * *
13607688 CCATAAAACGAGCGTGCAGGTGCTCAGTCGGCTAGAGGGGCGGGATGCACAAGCCAGGGATCAGC
193 CCATAAAACTAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCA-T
* * * * * ** * * *
13607753 CGGGTCCCCCTTTGCGTGCTGCCGATCCTGTTACTATAACCCTTGGCCCGGTCCAATCTTAGACT
257 CGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTAATCTTAGACT
*
13607818 GGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA
322 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
13607855 TGTGCGGGTG
Statistics
Matches: 2655, Mismatches: 332, Indels: 160
0.84 0.11 0.05
Matches are distributed among these distances:
888 1 0.00
889 8 0.00
890 619 0.23
891 3 0.00
892 6 0.00
893 206 0.08
894 53 0.02
895 2 0.00
896 136 0.05
897 64 0.02
898 220 0.08
899 45 0.02
900 2 0.00
901 469 0.18
902 6 0.00
903 43 0.02
905 1 0.00
906 4 0.00
907 1 0.00
910 1 0.00
911 1 0.00
915 3 0.00
916 146 0.05
917 2 0.00
918 1 0.00
919 235 0.09
920 7 0.00
921 6 0.00
922 163 0.06
923 4 0.00
924 197 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGACGAAGAA
AAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGTCTGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
TAAAACTAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCATCGGG
TCCCCCTCTACGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGAGGGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGG
TTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGT
Found at i:13607661 original size:26 final size:26
Alignment explanation
Indices: 13607625--13607674 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13607615 CTCGTTCGAT
13607625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13607651 CTTAGATTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
13607675 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13608501 original size:26 final size:26
Alignment explanation
Indices: 13608465--13608517 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13608455 CTGGTCTGAT
*
13608465 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13608491 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13608517 C
1 C
13608518 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13609398 original size:26 final size:26
Alignment explanation
Indices: 13609359--13609411 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13609349 CTGGTCTGAT
13609359 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
13609385 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13609411 C
1 C
13609412 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13609705 original size:892 final size:898
Alignment explanation
Indices: 13607869--13610091 Score: 3207
Period size: 892 Copynumber: 2.5 Consensus size: 898
13607859 CGGGTGGACG
* *
13607869 GGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTTAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
13607934 ACAATGGTCCATTAAGGCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATG
66 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATG
** * *
13607999 ATTTTCAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTTAGAAA-GAGTTTTGGCCCCAA
131 ATTTTTGAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTTCGAAAGGATTTTTGGCCCCAA
* * * *
13608063 ACTTGATAGGCGTGATCTTTATATTTTTTTTGGCATGCAAAAAAAAATTCAGGTAAAAACTCGAA
195 ACTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAA
* *
13608128 GTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGG
260 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
13608193 CAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTGA
325 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * *
13608258 TAGGGAGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGTGCATACCCCCTCGG
390 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTC-G
* * * * * *
13608323 CCTCCCCGATTGTCGGAACCCCAATGCCGCCGGTAAGGTTCTCAAGCGATGCTCCGACAATGGTG
454 ACGCCCCGATCGTCGGAACCCCAAT--C-ACGGT-ACGATCT-AAGCGATGCTCCGACAATGGTG
* * * ** * *
13608388 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTTG
514 CCCCGACGAAAAAAAATACGGCACCAACACATGCCCGAGCCCAGCATCTGCTACCGCAACCCTCG
* *
13608453 GTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGC
579 GTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
**
13608518 CTAAGTCAACCCACGAAACGAGCATTTGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGAT
644 CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGAT
** * * *** * * *
13608583 GGGGATCGGCCAGGTCCCCCTTTGTGTGCTGCCGATCTTGCTACTGCAACCCTCAGTCCAGTCCA
709 AAGGATCGACCAGGTCCCCCTCTACATGCTGCCGATCCTACTACCGCAACCCTCAGTCCAGTCCA
* * * * *
13608648 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
774 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGACAGACGAGCG
*
13608713 GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGATGTGAATCGATAGGGTGGTA
839 GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGACGTGAATCGATAGGGTGGTA
*
13608773 GGTGGGTTAAGGCACATCTTCATATTTCTAG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCA
1 GGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
13608837 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAC
65 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAT
13608902 GATTTTTGAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTCGAAAGGATTTTTGGCCCCAA
130 GATTTTTGAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTCGAAAGGATTTTTGGCCCCAA
** *
13608967 ACTTGGTAGACGTGATCCTTATATTTTTTTTTGGCACACACAAAAAAATTCAGCTAAAAACTCGA
195 ACTTGGTAGACGTGATCCTTATA-TTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGA
**
13609032 AGTGTACAAGATTTTGTGACCATTTGAAAAAAAAGTAACCCCATTTC-GAACACTTTAATGGCTA
259 AGTGTACAAGATTTTGTGACCATTTG--AAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTA
* *
13609096 CTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGATGTTTGATGA
321 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
13609161 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
386 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
** * *
13609226 T-GACGCCTTGATCGTCGGAACCCCAAT-ACGGT-CGAT-T-AG-G-TTCTCCGACGATGGTGCC
451 TCGACGCCCCGATCGTCGGAACCCCAATCACGGTACGATCTAAGCGATGCTCCGACAATGGTGCC
* *
13609284 CCGACGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGGATCTGCTACCGCAACCCTCGGT
516 CCGACGAAAAAAAATACGGCACCAACACATGCCCGAGCCCAGCATCTGCTACCGCAACCCTCGGT
13609349 CTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
581 CTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
13609414 AAGTCAACCCACGAAACGAGCGTGCGGTCGCTCAGTCGGCTAGA-GGG-GTGATGCGCAAGCTAA
646 AAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGATAA
* ** * ** ** **
13609477 GGATCGACCGGGTCCCCCTCTACATGCTGTTGATCCTACTACCGTAACCCTTGGTCTGGTCTGAT
711 GGATCGACCAGGTCCCCCTCTACATGCTGCCGATCCTACTACCGCAACCCTCAGTCCAGTCCAAT
* *
13609542 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACAAAACGAGCGGACAGACGAGTGGG
776 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGACAGACGAGCGGG
* * * *
13609607 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTA
841 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGACGTGAATCGATAGGGTGGTA
*
13609665 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAATTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
13609730 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
66 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATG
* * * * *
13609795 ATTTTTGAAACATTTTGCTGTTCGGGATTTTTTAAAA-TTTTTTC-AGAAGG-TGTTTTGGCTCC
131 ATTTTTG-AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTCGA-AAGGAT-TTTTGGCCCC
* * * *
13609857 AAACTTGGTAGACGTGATCCTTGTATTGTTGTTGGCATGCAAAAAAAAATTCAGCTAGAAACTCG
193 AAACTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCG
*
13609922 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACT
258 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
13609987 GGCAGCAAACCTATAAAATCTCAATTGCTCTTTAAGGCGGTGTGAGTTCTTGAGGTTTGATGAGG
323 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
13610052 GATAAGGGGCCAATATAAGGGTCAAGTGCCAGCACCCATC
388 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
13610092 ACTCATTAGA
Statistics
Matches: 1188, Mismatches: 120, Indels: 37
0.88 0.09 0.03
Matches are distributed among these distances:
889 129 0.11
890 1 0.00
891 64 0.05
892 344 0.29
893 28 0.02
894 174 0.15
895 1 0.00
896 2 0.00
898 1 0.00
899 2 0.00
901 4 0.00
903 21 0.02
904 179 0.15
905 84 0.07
906 1 0.00
907 153 0.13
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (898 bp):
GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATG
ATTTTTGAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTCGAAAGGATTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGAC
GCCCCGATCGTCGGAACCCCAATCACGGTACGATCTAAGCGATGCTCCGACAATGGTGCCCCGAC
GAAAAAAAATACGGCACCAACACATGCCCGAGCCCAGCATCTGCTACCGCAACCCTCGGTCTGGT
CTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGATAAGGATC
GACCAGGTCCCCCTCTACATGCTGCCGATCCTACTACCGCAACCCTCAGTCCAGTCCAATCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGACAGACGAGCGGGCGGGC
ACTACGCCGACCAGAGAGACGGGATGCGCAAGACGTGAATCGATAGGGTGGTA
Found at i:13610984 original size:26 final size:26
Alignment explanation
Indices: 13610945--13610997 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13610935 CTGGTCTGAT
* *
13610945 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
13610971 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
13610997 C
1 C
13610998 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:13611874 original size:26 final size:26
Alignment explanation
Indices: 13611838--13611888 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13611828 CAGATCTGAT
13611838 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
13611864 CTTAGACTGGGAATGATCTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
13611889 AAGTCAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:13612159 original size:889 final size:890
Alignment explanation
Indices: 13610348--13616205 Score: 7118
Period size: 901 Copynumber: 6.6 Consensus size: 890
13610338 CGGGTGGACG
* *
13610348 GGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTTAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
13610413 ACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTGTATTTTTCATG
66 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
13610478 ATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTTAGAAAGAGTTTTGGCCCCAA
131 ATTTTCAAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * * * * * *
13610543 ACTTGATAGGCGTGATCTTTATATTTCTGTTGGCATGCAAAAAAAAATTCAGCTGAAAACTCGAA
195 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
13610608 GTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTATTGG
260 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
13610673 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGTGA
325 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
** *
13610738 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTCGG
390 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG
* * *
13610803 CCCCCCCGATTGTCGGAACCCCAATGCCACCGGTCAGGTTCTCAGGCGATGCTCCGACGATGGTG
455 CCCCCTCGATCGTCGGAACCCCAATG---CC-GTC-GG---TCA-G-G-TTCTCCGACGATGGTG
* * * * * *
13610868 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTTG
509 CCCCGACGAAGAAAAATGAGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * *
13610933 GTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGCGAATGAACTCCGTATGC
574 ATCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA---
* * ** * * **
13610998 CTAAGTCAACCCACAAAATGAGCGTTTGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGAT
636 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCC
* * * * ** * * * *
13611063 GGGGATCGGCTTGGTCCCCCTCTGTGTGCTGGCAATTTTGCTACTGCAACCCTCAGTCCAGTCCA
701 GGGGATCGGCTAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAATCCGGTCCG
* * *
13611128 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGGGCG
766 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGAGCG
* *
13611193 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGTTGGTA
831 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTA
*** * **
13611253 GGTGGGCAAAGGCACATCTTCGT-TTCTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
1 GGTGGGTTTAGGCACATCTTCATATT-TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * *
13611317 TGCAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAGGACGAATCGTTTTCTATTTTTCAC
65 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
13611382 GATTTTCGAAACTTTTTACGGTTCCAGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCACCAA
130 GATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * * *
13611447 ACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAACTAAAAACTCAAA
195 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
13611512 GTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGG
260 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
13611577 CAACAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGTTGAGGGA
325 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
13611641 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCACCCCCG
390 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC-CCCCCG
13611706 GCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAA
454 GCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAA
* * ** * * *
13611771 GAAAAATGTGACACCAGCACATGCCTGAGCTTAGCATGTGCTGCGGCAACCCTCAATCAGATCTG
519 GAAAAATGAGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCAGGTCTG
* *
13611836 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGATCTCCGTA-TAAGTCAACCCA
584 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTACTAAGTCAACCCA
* * *
13611900 CGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCGACCAG
649 CGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCTAG
* * * ** *** *
13611965 GTCCCCCTCTGCGTGCTGCCGATCTTGTTGCCGCAACTTTTGGTCCGGTCTGATCTTAGACTGGG
714 GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAATCCGGTCCGATCTTAGACTGGG
* *
13612030 AATGAACTCCGTATGCCTAAGTCAACCGACAAAACGAGCGGACGGACGAGCGGGCGGGCACTACG
779 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGAGCGGGCGGGCACTACG
*
13612095 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATATGG-TGGTA
844 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTTGGTA
*
13612142 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAGTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
13612207 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATG
66 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * * * * *
13612272 ATTTTTGAAACTTTTTGCTGTTCGGGGATTTTTTAAAATTTTTCCCAGAAGGTGTTTTGG-CCCA
131 ATTTTCAAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTT-TCAGAAGGAGTTTTGGCCCCA
* *
13612336 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAGAAACTGGA
194 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
13612400 ACTGTACAAGATTTTGTGACCATTTG-AAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTG
259 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
13612463 GCAGCAAACCTATAAAATCTC-AATGCTCCTTAAGGGGGTGTGAGTTCTTGAGGTTTTGATGAGG
324 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGG
* * * * *
13612527 GATAAGGGGCCAATAT-AGGGTCAAGTACCAGCACCC-TCACTCATTATGTGCGCACACCCCCCT
388 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCC
* * * *
13612590 GGCCCCC-CGATCGTC-GAAACCCAATGCTGCCGGTTAGGTTCTCCAACGATGCTTCGGTGATGG
453 GGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-----C---GATGG
* ** *
13612653 TGCCCCGACGAAGAAAAAT-ACAGCACCAGCACATGCCCGAGCCCAGCATGTGCCACCGTAACCC
507 TGCCCCGACGAAGAAAAATGAGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA--C
13612717 TCGGTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
569 -C----C---TCGATC----A---GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTA
13612782 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
610 TGCTTAGACTGGGAATGAACTCCGTA---CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * * * *
13612847 GCCGCCCAGAGGGGCGGGATGCGTAAGCCGGGGATCAG-TCAGGTCCCCCTTTGCGTGCTGTCAA
672 GTCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCT-AGGTCCCCCTCTGCGTGCTGCCGA
* *
13612911 TCCTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGC
736 TCCTGCTACCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * ** *
13612976 CAACCGACAAAACGAGCGAACGGACGGGCGGGCGGGCACTACGCCCGTTAGAGAGATGGGATGCG
801 CAACCGACGAAACGAGCGGACGGACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * **
13613041 CAAGCCGTGGATCAATAGGGTAATA
866 CAAGCCGTGGATCGATAGGTTGGTA
* *
13613066 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
13613131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTGACA
66 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * *
13613196 ATTTT-AAAACTTTTTACGATTTGGGATTTTTTAAAATTTTTTGA-AAGGAGTTTTGTCCCCAAA
131 ATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * * * *
13613259 CTTGGTAGACGAGATCCTTGTATTTTTATTGGCATGCATAAAAACATTCAGCTAAAAACCCAAAG
196 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
13613324 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
261 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
13613389 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGAAT
326 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
13613454 AGGGGGCCAATATAAGGGCTC-AGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG
391 AGGGGGCCAATATAAGGGC-CAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG
* * *
13613518 CCCCC-CAATCATCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTGCGACGATGGTG
455 CCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGG-T-T----C--T-C--CGACGATGGTG
* * * * ***
13613582 CCCCGATGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAATGTTCG
509 CCCCGACGAAGAAAAATGAGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * *
13613647 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGC
574 ATCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA---
** * *
13613712 CTAAGTCAACCCACGAAACGAGCGTGTAGGCGGTCAGTCGGCCAGAGGGGCAGGATG-AGCAAGC
636 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCA-CAAGC
* * * * * * * *
13613776 CGGGGATAGGCTGGGTCCCCCTATGCATGCTACCGATCCTGCTACCGCAGCCTTCGATCCGGTCC
700 CGGGGATCGGCTAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAATCCGGTCC
* * * * * * *
13613841 GATCTTAGACTGGGAATGAACTCTGTATGCTTAAGCCAATCGACGGAACGAGCGGGCTGG-TGGG
765 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC-GGACGAG
* *
13613905 CGGGCGGGCATTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGTTGGTA
829 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTA
* * *
13613967 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCCTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
13614032 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTCAC
66 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCAC
* * * *
13614097 GATTTTCAAAAC-ATTTACGGTTCAAGA-TTTTTAAAA-TTTTTCGGAAGGAGTCTTGGCCCCAA
130 GATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * * *
13614159 ATTTGGTAGACATGATCCTTTTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-CGAA
195 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-A
* * *
13614223 AGTGTACAAGATTTTGTGACAATTTTAAAAAAGTGTCCCCATTTCAGAGACTTTAATGGCTACT-
259 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
13614287 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-GAGG-TTCATGAGGG
324 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
13614350 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCATATCATGTGCGCACA-CCCTCCG
389 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCG
13614414 GCCCCCT-GATCGTCGGAACCCCTAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGATGATGG
454 GCCCCCTCGATCGTCGGAACCCC-AATGCCGTCGGTCAGGTTCTCC-G--A-----C---GATGG
** * * *
13614478 TGCCCCGATTAAGAAAAATGCGGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGTCGCAACCC
507 TGCCCCGACGAAGAAAAATG-AGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* ** *
13614542 TCGTTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTA
571 TCGATCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * *
13614606 TGCCTAAGTCAGCCCATGAAATGAGCATGC-GGCGCACAGTCGGCCAGAGGGGCGAGATGCGCAA
636 ---CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAA
* * * * * *
13614670 GCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCTGATCCTACTACCACAACCCTCAATCTGAT
698 GCCGGGGATCGGCTAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAATCCGGT
* * *
13614735 CTGATCTTAGACTGGGAATGAACT-CGCATGCCTAAGCC-ATC--CG--ACGA----A---ACGA
763 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGA
* * * *
13614787 GCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCACAAGCCGTGGATCGATAGGATGGTA
828 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTA
* * * *
13614850 GGTGGGTTTAGGCACATCTTCATATTTCTACCTGCCATTACCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
13614915 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCATTTTCTATTTTTCACG
66 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * * ** *
13614980 ATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAA
131 ATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* *
13615045 CTTGGTAGACATGATACTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
196 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
13615110 TGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGC
261 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
13615175 AGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
326 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
13615240 AGGCGGCCAATATGAGGGCCAAGTACCAGCACCCATCACACATCATGTTCGCACA-CCCCCC-GC
391 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGC
* * * * * * * *
13615303 CCCCTCGACCATCGGAACCCCAATGCCGCCGGTCAGGTTTTCTG--G-TGATGCTCCGGCGAAGA
456 CCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGA
* * * *
13615365 AAAATGAGGCACCAGCACACGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGA-CCGGTCCGA
521 AAAATGAGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GATCAGGTCTGA
13615429 TCTTA-ACTGGGAATGAACT-C-----C---G--T----ATG-----C---CTAAGTCAACCCAC
585 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTACTAAGTCAACCCAC
* * ** ***
13615470 GAAACGAGCGTTCGGGCACTCAGTCAACCAGAGGGGCGGGATGGGTAAGCCGGGGATCGG-TAGG
650 GAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCTA-G
* * * * * * * * *
13615534 GACCCCCTCTGCGAGCTGCCGATCCTGCTGCCACAACCCTCGATCAGGTTCGATCTTAGATTTGG
714 GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAATCCGGTCCGATCTTAGACTGGG
* * ** *
13615599 AATGAACTCCGTATGCCTAATCCAAGCGACGAAACGAAAGGGCAGG-C-AGGCGGGCGGGCACTA
779 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC-GGACGA-GCGGGCGGGCACTA
* * *
13615662 CGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTA
842 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTA
*
13615711 GGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
13615776 ACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCATG
66 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
13615840 ATTTTTAAAACTTTTTACGGTTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
131 ATTTTCAAAACTTTTTACGG-TTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * * * * *
13615905 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGCGTACACAAAAACATTCACCTAAAAACTCGAA
195 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
13615970 GTGTACAAGATTTTGTGACCA-TTCAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTACTAG
260 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
13616034 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGA
325 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
13616099 TAGGGGGCCAATATAAGGG-CAAATACCAGCACCCATCGCACATCAT-TGCGCACA-CTCCCCGG
390 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG
* * *
13616161 CCCCCGGTC--CCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCG
455 CCCCC--TCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
13616206 GTGATGCTCC
Statistics
Matches: 4340, Mismatches: 487, Indels: 298
0.85 0.10 0.06
Matches are distributed among these distances:
847 23 0.01
848 101 0.02
849 12 0.00
850 2 0.00
852 2 0.00
853 1 0.00
854 4 0.00
858 15 0.00
859 61 0.01
860 192 0.04
861 249 0.06
862 1 0.00
864 1 0.00
867 1 0.00
872 14 0.00
873 62 0.01
874 13 0.00
882 18 0.00
883 207 0.05
884 18 0.00
885 151 0.03
886 85 0.02
887 114 0.03
888 111 0.03
889 395 0.09
890 69 0.02
891 16 0.00
892 3 0.00
893 125 0.03
894 59 0.01
895 13 0.00
896 109 0.03
897 106 0.02
898 125 0.03
899 19 0.00
900 58 0.01
901 524 0.12
902 27 0.01
903 90 0.02
904 216 0.05
905 137 0.03
908 2 0.00
910 2 0.00
911 1 0.00
913 1 0.00
916 2 0.00
917 5 0.00
918 1 0.00
919 2 0.00
920 58 0.01
921 43 0.01
922 63 0.01
923 23 0.01
924 417 0.10
925 47 0.01
926 38 0.01
927 76 0.02
928 2 0.00
929 1 0.00
930 1 0.00
933 1 0.00
935 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
ATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGC
CCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGA
AAAATGAGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCAGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTACTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCTAGGT
CCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGAGCGGGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTA
Found at i:13612768 original size:26 final size:26
Alignment explanation
Indices: 13612732--13612810 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
13612722 TCGGTTCGAT
13612732 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13612758 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13612784 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13612810 C
1 C
13612811 CTAAGTCAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13614594 original size:26 final size:26
Alignment explanation
Indices: 13614556--13614608 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13614546 TCGGTCCAAT
*
13614556 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13614582 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13614608 C
1 C
13614609 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13616848 original size:25 final size:26
Alignment explanation
Indices: 13616820--13616871 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13616810 ATGGTCTGAT
13616820 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
13616845 CTTAGACTGGGAGTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13616871 C
1 C
13616872 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13618637 original size:26 final size:26
Alignment explanation
Indices: 13618598--13618653 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
13618588 TCGGTTGGCT
*
13618598 TAAGCATACAGAGTTGATTC-CTAGTC
1 TAAGCATACAGAGTTCATTCTC-AGTC
**
13618624 TAAGCATATGGAGTTCATTCTCAGTC
1 TAAGCATACAGAGTTCATTCTCAGTC
13618650 TAAG
1 TAAG
13618654 ATCGGAACAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCTCAGTC
Found at i:13619508 original size:26 final size:26
Alignment explanation
Indices: 13619472--13619524 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13619462 GTTGACTTAG
*
13619472 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
13619498 GCATATGGAGTTCGTTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13619524 G
1 G
13619525 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13620318 original size:26 final size:26
Alignment explanation
Indices: 13620287--13620336 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13620277 GACTTAGGCA
13620287 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
13620313 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13620337 ATTAGATCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:13622238 original size:185 final size:185
Alignment explanation
Indices: 13621903--13622271 Score: 433
Period size: 185 Copynumber: 2.0 Consensus size: 185
13621893 TTGGCTTAGG
* * * * *
13621903 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGATAGCAGGATCAGCAG
1 CATACGGAGTTCATTCCCAGTCAAAGATCAAACCGAACCGAAGGTTGAGACAGCAGGATCAGCAG
* *
13621968 CACGTCGAGCGGGACCCGAGCGATCCCCGGCTTACGCATCCCGCTACTCTAGCCGGCTGAGCACA
66 CACGTAGAGCGGGACCCGAGCGATCCCCGGCTTACGCATCCCGCCACTCTAGCCGGCTGAGCACA
* * * ** *
13622033 TGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGTGTTCATTGCCAGTCTAAA
131 TGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAAA
* * *
13622088 CATACGGAGTTCATTCCCAGTCAAAGATCAAACTGGACTGAAGGTTGCAG-CAGCAGGATC-GAC
1 CATACGGAGTTCATTCCCAGTCAAAGATCAAACCGAACCGAAGGTTG-AGACAGCAGGATCAG-C
* * * * * *
13622151 AGCACGTAGAGGGGGACCCG-GCCGATCCCCGGCTTGCGCATCCTGCCCCT-TTGACCGGTTGAG
64 AGCACGTAGAGCGGGACCCGAG-CGATCCCCGGCTTACGCATCCCGCCACTCTAG-CCGGCTGAG
* * *
13622214 CGCCCT-CACGCTTGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAA
127 C-ACATGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAA
13622272 GATCGGACCA
Statistics
Matches: 154, Mismatches: 25, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
184 4 0.03
185 147 0.95
186 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (185 bp):
CATACGGAGTTCATTCCCAGTCAAAGATCAAACCGAACCGAAGGTTGAGACAGCAGGATCAGCAG
CACGTAGAGCGGGACCCGAGCGATCCCCGGCTTACGCATCCCGCCACTCTAGCCGGCTGAGCACA
TGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAAA
Found at i:13623149 original size:26 final size:26
Alignment explanation
Indices: 13623113--13623165 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13623103 GTTGACTTAG
*
13623113 GCGTACGGAGTTCATTCCCAGTCTAA
1 GCGTACGGAGTTCATTCCCAGCCTAA
13623139 GCGTACGGAGTTCATTCCCAGCCTAA
1 GCGTACGGAGTTCATTCCCAGCCTAA
13623165 G
1 G
13623166 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (26 bp):
GCGTACGGAGTTCATTCCCAGCCTAA
Found at i:13624064 original size:26 final size:25
Alignment explanation
Indices: 13624022--13624073 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
13624012 GTTGACTTAG
13624022 GCATACAAAGTCATTCCCAGTCTAA
1 GCATACAAAGTCATTCCCAGTCTAA
*
13624047 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAG-TCATTCCCAGTCTAA
13624073 G
1 G
13624074 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (25 bp):
GCATACAAAGTCATTCCCAGTCTAA
Found at i:13625364 original size:905 final size:903
Alignment explanation
Indices: 13622246--13628218 Score: 7613
Period size: 893 Copynumber: 6.7 Consensus size: 903
13622236 GTTGACCTAG
* ** * * *
13622246 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTTCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
*** * * *
13622311 CTCGGGCATGTGTTGGAATCGTATTTTTCTTCGTCGGGGCACCATCGTCGGTGCATCG-CTAGAG
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTC-AGAG
* * *
13622375 AACCTGACCAGTGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
13622440 GCGATGGGTG-TCGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTC
195 GCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
13622504 ACACCCCCATAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
13622569 ATGGGGACACTTTTTCCTAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * ** * *
13622634 TTGTGCATGCCAACAAAAATACAACGATCACGTCTACCAGGTTTGGGGCTGAAACTCC-TTCCAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAA
* * * *
13622698 AAATATTTTAAAAAATCCCGAACCATAAAAAGTTTAAAAAATCGTGAAAAATAGAGAACGAGTCG
453 AAA-ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
13622763 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
13622828 GGCATTGGCACAG-AGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
582 GGCATTGGCAC-GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
13622892 TTGCGCATCCCGTCTCTCTAGCCAGCGTA--G-T-----GCCCG--C-CCGCTCGTTTTGAT-GG
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCGCTCGTTTCG-TCGG
* ** ** *
13622945 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTTAGGGTTGTGGTAGCA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCA
* * * * * * * * *
13623010 AGATCGGTAGCATGCATAGGAGGACCTGATCGATCCCCAGCTTGTGCATCTCGCCCCTCTGGCTG
775 AGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
13623075 GCTAAACACCCCCACGCTCGTTTCGCGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
840 GCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
13623139 GCGTACGGAGTTCATTCCCAGCCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
13623204 CTCAGACATGTGTTGGTACCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCG-CTAGAG
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTC-AGAG
*** *
13623268 AACCTGACCAATGGCATTGGGGTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
13623333 GCGATGGGTG-TCGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAATCTTGAGAACTC
195 GCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
13623397 ACACCCCCTTAAAGAGCATTTAAGATTTTACATGTTTCCTGCCAGTAGCCATTAAAGTGTCAGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
13623462 ATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACATCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * **
13623527 TTGTGTATGCTAACAAAAATACAAGGATCACGTGC-ACCAAGTTTGGGGCCAAAA-CTTTTTCCG
388 TTGTGCATGCCAACAAAAATACAAGGATCACGT-CTACCAAGTTTGGGGCCAAAACCCCTTT-CG
* * ** *
13623590 AAAAAATTTTAATAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAATAATAGAAAACGAGTC
451 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
13623655 ATCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
516 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
13623720 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
581 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
13623785 TTCCACATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCTTGCTCGCCTGCCCGCCTACTCGTTTCG
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGC---C-CGCCCGCCCGCC-GCTCGTTTCG
* * * * ** * *
13623850 TCGGTTGGCTTAGGCATACAGAGTTCATTCGCAGTCTAACATCAGATTGGACCGATGGTTGCGGC
706 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGC
* * * * * ** * * * *
13623915 AGCAGGATCAGCAGCACACAAAAGGGGACCCGGTCGATCCTCGGCTTACGCATCCCACCCCTCTG
771 AGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTG
* * **
13623980 GCCGACTGAGCACCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACAAAG-TCATTCCCAGTC
836 GCCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
13624044 TAA
901 TAA
* * * *
13624047 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
13624112 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAAAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCAGAGA
* * * * * **
13624177 ACCTGATCGACGACATTGGGGTTCTGGCGATTAGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
13624241 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* **
13624306 ACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAATCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
13624371 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATGTTTAG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
13624436 TGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGTAAAAACCCCTTTCAAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAAAAA
* *
13624501 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC-TACT
456 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT-CT
* *
13624565 TGCCATGAAACTTCTCGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
13624630 ATTGGCACGTAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTATCGATCCATGGCTTGC
585 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
13624695 ACATCTCGTCTCTCTGGCCGGCGTAGTGCTCGCCCACCCGCCCGCTCGCTTGTTTTGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGG
* *
13624760 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGTAGGAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCAAGAT
* * * * * ** *
13624825 TGGAAACATGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGGCCCTCTGGCCGGCTG
779 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
13624890 AGCACCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
844 AGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
13624950 GCAAAGGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
13625015 CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGCCGAGGCACCATCG-CTAGAGCATCGTCGGAG
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTC-GGAGCATCGTCAGAG
* * *
13625079 AACCTGACCGGCGGCATTGGAGTTCCTACGATCGGGGGGGGCGAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
* * * * * *
13625144 TGTGATGGTTTCTAGTACTTGGCCCTTATATTGGCCCCCTAT-CGTGCATCAAACCTGGAGAACT
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT-CATCAAACCTCGAGAACT
* *
13625208 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
13625273 AATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
13625338 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTTCGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAA
* * ** *
13625402 AAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
453 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
* * *
13625467 CTTTCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAACCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
13625532 GCA-TGGCACGTAGAAATATGAAGATTTTCCTAAACCCACCTACCAACCTATCGATCCACGGCTT
583 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
13625596 GCGCATCCCGTCTCTCTGGCCGGCATA--G-T-GCCCGCCCG--C-CCGTTCATTTCGTCAGTTG
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTG
* * * * * *
13625654 GCTTCGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGTTTGCAGCAGCATGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCAAGA
* * * *
13625719 TCGGTAGCACACAGAGGGGGACCCGGCCGATCCCC-GACTTGCGCATCCCGCCCCTCTGGCCGGT
778 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
13625783 TGAACACCCGTACCCTCGTTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
842 TGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * **
13625845 AAATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
13625910 CTCGGGCATCTGTTGGTGCCGTATTTTTCTTCG-CTAGGGCACCA---TC---G--TCG---GAG
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATCGTCGGAGCATCGTCAGAG
* * ** *
13625963 AACCTGATCGGCGGCATTGAGGTTCTAACGATCGGGGGGGCCGGGGGGTTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
13626028 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
13626093 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
13626158 TTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** ** *
13626223 GTGCATGCCAAGAAAAATACAAGGATCACGTCTATTAAGTTTTTGGCCAAAA-CACTTTCTGAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTC-GAAA
* * * * *
13626287 AATTTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
* *
13626352 TTGCCATGAAACTTCATGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
13626417 CATTGGCA-TTCAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCTACGGCTT
584 CATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * ** * *
13626481 GCGCATCTCGTCTCTCTGGCCGACGTTGTGCTCGCCCGCCCACCCGCCTGCTAATTTCATCGATT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCC-GCTCGTTTCGTCGGTT
* * ** *
13626546 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATC-GAACCGAGGGTTGTGGCAACAA
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCAGCAGCAA
* * *
13626610 GATCGGCAGCACGCAGAGGGGGACCC-AGCCGATCCCCAGCTTTCGCTTCTCGCCCCTCTGGCCG
776 GATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
13626674 GTTAAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
840 GCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
13626738 G-AT-C--AG---A---CC-G-----GAT----------CGAGGGTTGCAAAAAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCACATGCTGG
* * *
13626777 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTTGT-TAGGGCACCA---T-----CA---TCAGA
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATCGTCGGAGCATCGTCAGA
* * * ** * *
13626830 GAACCTGACCGACGGAATTGGGGTTTCGGTGATCGGGGAGGCC--GGGGGTGTGCGTACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * *
13626893 TGCGATCGGTGCTGGTACTTGGCCCTGATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
13626958 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
13627022 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** ** * *
13627087 TGTGCATGCCAATGAAAATACAAGGATCACGTCTACCAAG-TTGGGGAAAAAACACCTTCCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAAA
*
13627151 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
* * *
13627216 CTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGCATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * *
13627281 CATTGGCACACAGAAAAATGAAGATGTGCCTTAGCCCACCTACCACCCTATCGATTCACGGCTTG
584 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
13627346 CGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CTGCCCGCCCGCCCGGCCGCTCGTTTCGTCGGTT
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCTC-GCCCGCCCGCCC-GCCGCTCGTTTCGTCGGTT
* * * *
13627410 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CTGGACTGAGGGTTGCAGTAGCAA
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCAGCAGCAA
* * ** * * * * *
13627474 AATTGGCAGCAAAC-GAAGGGGA-CCTAGCCGATCCCCATCTTGTGCATCCCGCCCCTCTAGCCG
776 GATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
* * ** * * *
13627537 ACTGAGCGCCCAAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTTTAA
840 GCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
13627601 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACACCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
13627666 CTCGGGCATGTGTTGGTACCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCTGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCAGAGA
* *
13627731 ACCTGACCGGCGGCATT-GGGTTCCGACAATC-GGGGGGCC-GAGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
13627793 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13627858 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
13627923 GGGGACACTTTTTTTCAAATGGTCACAAAATCTTATACGCTTCGAGTTTTCAG-TGAATTTTTTT
326 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
13627987 TTGCATGCCAACAAAAAATA-AA--ATCACGTCTATCAAGTTTGGGGCCAAAA-TCC-TTCTAAA
390 GTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTC-GAA
* **
13628047 AAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCA
453 AAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
* *
13628112 TCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTAACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
13628177 GGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACC
582 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
13628219 CGTCCACCCG
Statistics
Matches: 4427, Mismatches: 542, Indels: 217
0.85 0.10 0.04
Matches are distributed among these distances:
862 2 0.00
863 96 0.02
864 303 0.07
865 165 0.04
866 84 0.02
867 11 0.00
868 90 0.02
870 1 0.00
873 2 0.00
874 1 0.00
877 3 0.00
879 3 0.00
882 1 0.00
883 246 0.06
884 176 0.04
885 76 0.02
886 1 0.00
887 4 0.00
888 52 0.01
889 19 0.00
891 3 0.00
892 5 0.00
893 778 0.18
894 11 0.00
895 269 0.06
896 5 0.00
897 34 0.01
898 249 0.06
899 120 0.03
900 48 0.01
901 1 0.00
902 169 0.04
903 239 0.05
904 139 0.03
905 245 0.06
906 261 0.06
907 199 0.04
908 166 0.04
909 150 0.03
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCAGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCAAGATCG
GCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13625851 original size:26 final size:26
Alignment explanation
Indices: 13625821--13625870 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13625811 TGACTTAGGC
13625821 ATACGAAGTTCATTCCCAGTCTAAAA
1 ATACGAAGTTCATTCCCAGTCTAAAA
*
13625847 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGAAGTTCATTCCCAGTCTAA
13625871 GATCGGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAAA
Found at i:13627612 original size:26 final size:26
Alignment explanation
Indices: 13627575--13627627 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13627565 GTTGACTTAG
* * *
13627575 GCATACGGAGTTCATTCGCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13627601 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13627627 G
1 G
13627628 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13629183 original size:26 final size:26
Alignment explanation
Indices: 13629147--13629199 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13629137 GTTGACTTAG
13629147 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
13629173 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
13629199 G
1 G
13629200 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:13630074 original size:25 final size:26
Alignment explanation
Indices: 13630032--13630083 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
13630022 GTTGACTTAG
*
13630032 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13630058 GCATACGAAG-TCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13630083 G
1 G
13630084 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13630958 original size:26 final size:26
Alignment explanation
Indices: 13630928--13630980 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13630918 GTTGACATAG
*
13630928 GCATACGGAGTTCATTTCGAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
*
13630954 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
13630980 G
1 G
13630981 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:13631226 original size:903 final size:896
Alignment explanation
Indices: 13628467--13633151 Score: 5671
Period size: 880 Copynumber: 5.3 Consensus size: 896
13628457 TCTAATGAGT
* * * *
13628467 GATGGGTGCTGGCACTTGACCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
13628532 CCCCCCTAAGGAGCAATTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
13628597 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTTT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * * *
13628662 GCATGCCAACAACAATACAAGGATCACGTTTACCAAGTTTGGAG-CAAAAACACCTTCTGAAAAA
196 GCATGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTT-TAAAAAA
* * * * *
13628726 ATTTTAAAAAATCCCAAACAGCAACAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
259 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
13628791 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCA
324 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
13628856 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCG
389 TTGGCAT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
13628921 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGTCC-GTCCGCTCGTTTTGTCGGTTGA
453 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCTG-CCGCTCGTTTCGTCGGTTGG
** ** *
13628985 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTATGGTAGTAGGAT
516 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCA-GAT
* * *
13629050 CAACAGCACGTAGAGGGGGACCCGGTCGATCCT-TAGCTTGCGCAT-CCCCCCTCTAGCCGACTG
580 CGACAGCACGCAGAGGGGGA-CCGGTCGATCCTCT-GCTTGCGCATCCCCCCCTCTAGCCGGCTG
*
13629113 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATA
643 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
13629178 CGGAGTTCA-TTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACAT-CTTGGGCTC
708 CGGAGTTCATTTC-CAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGC-TGGGCTC
* * *
13629241 GGGCATGTGCTGGTGCCGTATTTTTTTTCGTCAGGGCACCA--TC---G--T--C-GGAGAACCT
771 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCGCTGGAGAACCT
* * * ** * * *
13629296 GATCGACCGTATTGGGGTTCCGACGATC-AAGGCGTCAGGGGGTGTGCGCACATGATGTGC
836 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
13629356 GATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTTATCAAACATCGAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
13629421 -CCCCTTAAAGAGCATTTTAGATTTTACAAGTTTGCTTGCCAGTAGCCATTAAAGTGTTTGAAAT
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAAT
**
13629485 GGGGTTACTTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
130 GGGG--ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
13629550 TGTGCGTGCCAAAAAAAAATA-TAAGTATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGA
193 TGTGCATGCC-AAAAAAAATACAAAG-ATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTT--A
* *
13629614 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTTGAAAAAATAGAAAACGAG
254 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATC-ATG-AAAAATAGAAAACGAG
*
13629679 TCATCTTGCCATGAAACTTTCACAGTGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCATA
317 TCGTCTTGCCATGAAAC-TTCAC-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
13629743 AAAATGGCATTGGCATCTAGAAATATGAAGATGTGCCTTAACCCACCTACCA-CCT-TC-ATTCA
380 AAAATGGCATTGGCATC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
** * *
13629805 CATC-TGCGCATCCTGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCG-C-CTCGTTT-GT
444 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCGCTCGTTTCGT
* ** * *
13629865 CGGTT-GCTTAGGCATAC--AGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGCAGGTTGCAG
509 CGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAG--GGTTGCGG
* * * * *
13629927 TAGCAAGATCGGC-GCAACACAAAGGGGGACCTGG-CTGATTCC-CAT-CTTGTGCATCCCGCCC
572 TAGC-AGATCGACAGC-ACGCAGAGGGGGACC-GGTC-GA-TCCTC-TGCTTGCGCATCCCCCCC
** *
13629988 TCTAGCCGGCTGAGC-CCCAAATGCTCGTTTCG-GGGTTGACTTAGGCATACGGAGTTCATTCCC
631 TCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * *
13630051 AGTCTAAGCATACGAAG-TCATTCCCAGTCTAAGATCAGACCAGACC-AAGGGTTACGACAGCAC
696 AGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAA-GGTTGCGGCAGCAC
* *
13630114 ATGCT-GGCTCGGGCAT-T--TGTTGCCGCATTTTTCTTCGTC-GGGTACCATCATCGGAGCATC
760 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATC
* * * *
13630174 GCT-GAGAACCT-ACCGGCGGCATTGGGGTTCTGACAATCGGGGAGGCCGAGGGGGTGTGCGCAC
824 GCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCAC
13630237 ATGATGTGC
888 ATGATGTGC
* * *
13630246 AATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCACTCATCAAACCTCGAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13630311 CCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
13630376 GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAG-TTTTACCTGAATTTTTTTTT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
13630440 GCATGCCAAAAAAAATATAAAGATCACGCCTATCAAGTTTGGGGCCAAAAATCCTTGTAAAAAAA
196 GCATGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-TAAAAAAA
* * *
13630505 TTTTCAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTT
260 TTTT-AAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
13630570 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
324 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
13630635 TTGGCATGCAAAAATATGAAGATGTGCGTAAACCCACGTACCACCCTATCGATCCACGGCTTGCG
389 TTGGCAT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
13630700 CATCCGGTCTCTCTGGCCGGCATAGTGCCCGCCTGCCCGCCTGCACGTTCATTTCATCAGTTGGC
453 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGC-CGCTCGTTTCGTCGGTTGGC
* * * *
13630765 TTAGGCATACGGAGTTCATTCCTAGTCTAGGATCAGATCAGACTGAGGGTTGCGGTAGCCAGATT
517 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAG-CAGATC
* ** * * * *
13630830 GATAGCATACAGAGGGGGACTCAGCCGATTCTCTGCTTGCGCATCCCACCCCTCT-GTCAGGCTG
581 GACAGCACGCAGAGGGGGAC-CGGTCGATCCTCTGCTTGCGCATCCC-CCCCTCTAG-CCGGCTG
* * * * *
13630894 AGCGCCCGCACGCTCGTTTCATAGGTTGACATAGGCATACGGAGTTCATTTCGAGTCTAAGCATA
643 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
13630959 TGGAGTTCATTTCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGG
708 CGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGG
* * *
13631024 GGATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTG
773 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCGCTGGAGAACCTG
* *
13631089 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAGATGATGTAC
837 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
13631149 GATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTTGAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13631214 CCTCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
13631279 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
13631344 GCATGCCAAGAAAAATA-AAAGGATCACGTCTACCAAGTTTAGGGCCAGAAATCCTTTCAAAAAA
196 GCATGCCAAAAAAAATACAAA-GATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTT-AAAAAA
* * * *
13631408 TTTTTAAAAAATCCCGAACCTTAAAAAGTTTCAGAAATCATGAAAAATAGAAAACGAGTCGTCTT
259 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
13631473 GCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCA
324 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** * **
13631538 TTGGCATCTAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCGTATTTATCCACAGCTTATG
389 TTGGCATC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
13631603 AATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCCTGCCTGCTCATTTTGTCGGT
453 CATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCCCGCCTGCC-GCTCGTTTCGTCGGT
* * * ** ** * * *
13631668 TGGCTTAGGCATACGGAGTTTATTCCCAGTCCAAGATTGGACCGGACCAAAGGTTGTGGCAGCAG
513 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAG
* * * * * *
13631733 AATGGACAGCACGCAGA-GGGGACTCGGTCGATCCCCAGCTTGCGCA-CGTCGCCCCTCTTGTCG
578 -ATCGACAGCACGCAGAGGGGGAC-CGGTCGATCCTCTGCTTGCGCATC--CCCCCCTCTAGCCG
* *
13631796 GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAG
639 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
13631861 -AT--TG-G---A----C---C----A--A-ACC-GA--G--GGTTG-GAACAGCATATGCTGGG
704 CATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAAGGTTGCG-GCAGCACATGCTGGG
* * * *
13631899 CCCGGGCATGTGTTGGTGCCGCATTTTTCTTTG-CTGGGGCACCATCGCCGGAGCATCG-TCGGA
768 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATC-TCGGAGCATCGCT-GGA
*
13631962 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGCGGGCCGGCGGGGTGTGCGCACATGATG
830 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATG
13632027 TGC
894 TGC
* *
13632030 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGGGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13632095 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATA
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
13632160 GGGATAATGTTTTCAAATGGTCACAAAATTTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
13632225 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAAATCCTTTCGAAAAAA
196 GCATGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTT--AAAAAA
* ** * * * *
13632290 GTTTT-AAAAATCTTGAACCGTAAAAAG-TTTGAAAATCGTGAAAAATAGAAAACGAGTCATTTT
259 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
13632353 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCAT-AAAATGGCA
324 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
13632417 TTGGCACACAAAAATATGAAGATGTGCGTAAACCCACTTACCACCCTATCGATCCACGGCTTGCG
389 TTGGCA-TCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
13632482 CATCCCGTCTTTCTGGCTGACGTAGT----GCCCGCCCG--T-CCGCTCGTTTCATCGATTGGCT
453 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCGCTCGTTTCGTCGGTTGGCT
** * * *
13632540 TAGGCATACGGAGTTCATT-CTCAGTCTAAGATCAGATTGGA-TCGAGGGTTACGATAGTAGGAT
518 TAGGCATACGGAGTTCATTCCT-AGTCTAAGATCAGACCGGACT-GAGGGTTGCGGTAGCA-GAT
* * * * * **
13632603 CAACAACACGTAGAGGGGGACCCGATCGATCCT-TAGCTTGCACATCCCCCCCTCTAGCCGATTG
580 CGACAGCACGCAGAGGGGGA-CCGGTCGATCCTCT-GCTTGCGCATCCCCCCCTCTAGCCGGCTG
13632667 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
643 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * *
13632732 CGAAGTTCA-TTCTCAATCTAAGATCAGACCGGACCGAAGGTTACGGTAGCACATCCTGGGCTCG
708 CGGAGTTCATTTC-CAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTGGGCTCG
*** *
13632796 GGCATGTGCTGGTGCCATTTTTTTTTTCGTCGGGGCACCA--T-----CAT--C-GGAGAACCTG
772 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCGCTGGAGAACCTG
* * * ** * * *
13632851 ATCGACCGCATTGAGGTTCCGACGATC-AAGGCGTCAGGGGGTGTGCGCACATGATGTGC
837 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
13632910 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTTACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
13632975 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
13633040 GGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAA-TTTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
13633104 GCATGCC--AAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAA
196 GCATGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAA
13633152 CTCCATCACC
Statistics
Matches: 3274, Mismatches: 389, Indels: 278
0.83 0.10 0.07
Matches are distributed among these distances:
866 1 0.00
867 141 0.04
868 27 0.01
869 3 0.00
871 10 0.00
874 1 0.00
877 38 0.01
878 1 0.00
879 107 0.03
880 409 0.12
881 275 0.08
882 55 0.02
883 98 0.03
884 104 0.03
885 77 0.02
886 139 0.04
887 89 0.03
888 113 0.03
889 103 0.03
890 115 0.04
891 116 0.04
892 70 0.02
893 157 0.05
894 26 0.01
895 77 0.02
896 130 0.04
897 49 0.01
898 12 0.00
899 2 0.00
901 19 0.01
902 24 0.01
903 391 0.12
904 108 0.03
905 4 0.00
906 94 0.03
907 89 0.03
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (896 bp):
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTAAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGATCGACAG
CACGCAGAGGGGGACCGGTCGATCCTCTGCTTGCGCATCCCCCCCTCTAGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTTCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCGCTGGAGAACCTGACCGACGGC
ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
Found at i:13632738 original size:26 final size:26
Alignment explanation
Indices: 13632701--13632753 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13632691 GTTGACTTAG
* *
13632701 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
13632727 GCATACGAAGTTCATTCTCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
13632753 G
1 G
13632754 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:13634197 original size:26 final size:25
Alignment explanation
Indices: 13634168--13634250 Score: 103
Period size: 26 Copynumber: 3.2 Consensus size: 25
13634158 GTCCGGTTGT
13634168 CTTAGACTGGGAAATGACTCCGTATG
1 CTTAGACTGGG-AATGACTCCGTATG
*
13634194 CTTAGAACTGGGAATGATCTCCATATG
1 CTTAG-ACTGGGAATGA-CTCCGTATG
* *
13634221 GTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGGGAATG-ACTCCGTATG
13634247 CTTA
1 CTTA
13634251 AAGTCAACCA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
26 30 0.61
27 19 0.39
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGACTCCGTATG
Found at i:13635113 original size:26 final size:26
Alignment explanation
Indices: 13635077--13635129 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13635067 CTGATCTGAT
13635077 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13635103 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13635129 C
1 C
13635130 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13636689 original size:903 final size:898
Alignment explanation
Indices: 13633239--13637095 Score: 4523
Period size: 887 Copynumber: 4.3 Consensus size: 898
13633229 TTGGCACAAA
** * *
13633239 ACATGCCCGGAG-CCAGCATGTGCTATCGCAACCCTC-GTCCGGTCTGATCTTTAGACTGGGAAT
1 ACATGCCC-GAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATC-TTAGACTGGGAAT
* * **
13633302 GAACTTCGTATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAA-CCATAAAACGAGCGTG
64 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * ** *
13633366 TGGGTGCTCAGCCGGCCAGAGGGGC-GGAATGTGCAAGCTGGGGATCGG-CTAAGT-CCTTTCTG
129 -CGGTGCTCAGCCGGCTAGAGGGGCAGG-ATGCGCAAGCCGGGGATCGGTC-GAGTCCCCCTCTA
* * * *** *
13633428 CGTGCTGTCGATC-TGCCGTTGCAA-CCTCATTCTAATCCAATCTTAGACTGGGAATGAACT-CG
191 CGTGCTGTCGATCTTGCTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCG
* * * * * * * * * *
13633490 TATGCCTAAGCC-ACCGACAAAATGAGCGAGCGGGCAGATGGCGGGTACTATGTCGACTAGAGAG
256 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGAGGGCGGGCACTACGCCGGCCAGAGAG
* * *
13633554 ACGGGATGCGC-AGCTGTGGATCG-TAGGATGGTAGGT-GGTTTTGGCACATCTTCATATTTCTA
321 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* * *
13633616 CATGCCAATGCATTTTTATGGCTTGTAAATTCATATAATGGT--CTTAAGCCTTCACGAGAAGTT
386 CATGCCAATGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATT
* * * * **
13633679 TCATGGCAAGGTGACTCATTTTTTATTTTTCACCATTTTCGAAACTTTTTGTGGTTTCAG-ATTT
451 TCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGG-TTCAGAATTT
** ** * * * *
13633743 TTTATTATTTTTTCTTAAGGAGTTTTGGCCCCAAACTTGGCAGACTTGATCCTT-T-TTTTT-TT
515 TTTAAAATTTTTTCAGAAGAAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
** * * *
13633805 -TTATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATCGAAAAAA
580 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
13633869 GTGTCCCCATTTCAGACACTTTAATGGCTACCTGGCAGCAAACTTGTAAAACCTCAAATGCACTT
645 GTGTCCCCATTTCAGACACTTTAATGGCTA-CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * **
13633934 T-AAGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGACAATATAAAGGCCAAGTAGTAG
709 TAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
13633998 CA-CCATCGCACATCATGTGCGCACACCCCCTGGCCCTCCGATCGTCGGAACCCCAATGCCGTCG
774 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCG
* * * *
13634062 GATCAGGTT-TTCGATGATGCTTCCAGCGATGGTGCCCCAACGAAGAAAAA-GCAG--CCAAC
839 G-TCAGGTTCTCCGGTGATGC-T-CAGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAAC
* ** * * *
13634121 ACAATGCTCGAGCTTAGCTTGTGCTACCG-ACCCTCCGGTCCGGTTGTCTTAGACTGGGAAATGA
1 AC-ATGCCCGAGCCCAGCATGTGCTGCCGTA-AC-CC--T-C-G--GTC-----C---G----G-
* * * * *
13634185 CTCCGTATGCTTAGAACTGGGAATGATCTCCATATGGTTAGACTGAGAATGAACTCCGTATGCTT
44 -TCCG-AT-CTTAG-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
13634250 AAAGTCAACCAAC-AAAC-TGC-TGCGGTGCTCAACCGGCTAGAGGGGCAGGATGCGCAAGCCGG
105 -AAGTCAACCCACGAAACGAGCGTGCGGTGCTCAGCCGGCTAGAGGGGCAGGATGCGCAAGCCGG
* * * *
13634312 GGATCGGTCGTGTCCCTTCTCTACGTGCTGTCGATCTTACTGCTGCAACCCTCAGTCCGGTCTGA
169 GGATCGGTCGAGTCCC-CCTCTACGTGCTGTCGATCTTGCTGCTGCAACCCTCAGTCCGGTCTAA
* * * *
13634377 TCTTAAACTGGGGAATGAAGTCCGTATGCCTAAG-CAACAGACGAAATG-GCGGGCGGGC--A-G
233 TCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGAGG
13634437 GC-GGC-CTAACGCCGGCCAGAGAGACGGGAT-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
297 GCGGGCACT-ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
13634499 GTTTAGGCACAGCTTCATATTT-TGCATGCCAAT-CATTTTTATGGCTTTTAAATTCATACAATG
361 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCATTTTTATGGCTTGTAAATTCATACAATG
* * *
13634562 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
426 GTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTC
* * * * * *
13634627 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTCTCAGAAGGAGTTTTAGG-CCCAAACTTGG
491 GAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTCAGAAGAAATTTT-GGCCCCAAACTTGG
* *
13634691 TAGACGTGATCCTTGTATTTTTCTTGGCATGCA-AAAAAACATTCAGCTAAAAACTCAAAGTGTA
555 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTA
* * * *
13634755 CAAGATTTTGTGACTATTTGAGAAAAGTGTCCCCATTTCATACACTTTAATGACTACTGGCAGCA
619 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
13634820 AACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAGGG
684 AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* * *
13634885 GGCCAATATAAGGGCCAAGTACCAGCAACCATCACACATCATGTGCGCACA--------CCCCTC
749 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * *
13634942 GATCG-CTAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTAATGCTCCGACGATGGTGCCCCGA
814 GATCGTCGA-AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCAG-CGATGGTGCCCCGA
13635006 CGAAGAAAAATACAGCACCAAC
877 CGAAGAAAAATACAGCACCAAC
* * * * *
13635028 ACGTGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGA
1 ACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* **
13635093 ACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATAAGCGTGTC
66 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-C
* * * * ** *
13635158 GGTGCTCAGCCGGCCAGAGGGTCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTACGTG
130 GGTGCTCAGCCGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTG
* * * * * * *
13635223 CTATCAATCCTGTTGCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGTAATGAACTCCGTATG
195 CTGTCGATCTTGCTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
13635288 TCTAAGCCAACCAACGAAACGAACTGGCGGAC---GGGCGGGCACTACGCCGGCCAGAGAGACGG
260 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACGG
* **
13635350 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTATGTG
325 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
13635415 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCA
390 CCAATG-CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCA
* *
13635480 TGGCAAGATGACTCGTTTTCTATTTTTTCATGATTTT-G-AACTTTTTACGGTT-TGAGATTTTT
454 TGGCAAGATGACTCGTTTTCTA-TTTTTCACGATTTTCGAAACTTTTTACGGTTCAGA-ATTTTT
* * ** * *
13635542 T-TAATTTTTTC-GAA-AGGATTTTTCCCCCAAACATGGTAGACGTGATCCTTATATTTTTGTTG
517 TAAAATTTTTTCAGAAGA-AATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
13635604 GCACGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
581 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
13635669 TGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTT
646 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* ** * *
13635733 AAGGGGTTGTGAGTTCTCGAGGTTTGATGAGATATAGGGGGCCAATATAAGGGCCATGTACTAGC
711 AAGGGG-TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
13635798 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGAAACCCCAATGCCGTCG
775 ACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGAAACCCCAATGCCGTCG
* * *
13635863 GTCAGGTTCTCCGGTGATGCTTCAGCGAGGGTGCCCCGACAAAGAAAAATGCAGCACCAAC
839 GTCAGGTTCTCCGGTGATGC-TCAGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAAC
**
13635924 ACATGCCCGAGCCTGGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGA-TCGGGAATG
1 ACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACT-GGGAATG
* * *
13635988 AACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
65 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * ** *
13636053 GGGTGCTCAACCGGCTAGAGCGGCACGATGTGCAAGCCAGGGATCTATCGAGTCCCCCTCTACAT
130 -GGTGCTCAGCCGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTACGT
** * * ** **
13636118 GCTGTCGATCTTGCTATTGTAA-CCTCAGTCCGGTCTGATCTTAGTTTGGGAATGAACTCTATAT
194 GCTGTCGATCTTGCTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
**
13636182 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGGGCACTACGTTGGCCAGAGAGAC
259 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGA-GGGCGGGCACTACGCCGGCCAGAGAGAC
* * *
13636247 GGGGTGCGCAAGCCATAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAT
323 GGGATGCGCAAGCCGT-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
*
13636312 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATT
387 ATGCCAATG-CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATT
* *
13636377 TCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGAATTTT
451 TCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGAATTTT
**
13636442 TTAAAATTTTTTCAGAAGAAATTTTGGCCCCAAACTTGGTAGACAAGATCCTTGTATTTTTGTTG
516 TTAAAATTTTTTCAGAAGAAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
13636507 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
581 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
13636572 TGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
646 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
13636637 AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
711 AAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
*
13636702 CCCATCGCACATCATGTGCGCACACCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCG
776 CCCATCGCACATCATGTGCGCACACCCC-CCGG-CCCCCCGATCGTCGAAACCCCAATGCCGTCG
*
13636767 GTTAGGTTCTCC---G--G-T----GATGGTGCCCCGACGAAGAAAAATAC-GACACCAAC
839 GTCAGGTTCTCCGGTGATGCTCAGCGATGGTGCCCCGACGAAGAAAAATACAG-CACCAAC
** ** * * *
13636817 ACATGTTCGAGCCCAGCATGTGCTGCCAAAACCTTCGGTCTGGTTCGATCTTAGACTGGGAATGA
1 ACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * *
13636882 ACTCCGTATGCTTAGATTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTACA
66 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-
* * * * * * *
13636947 GGTGCTCAGTCGGCTAGAGAGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTTTGCGTG
130 GGTGCTCAGCCGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTG
* * * ** ** * * *
13637012 CTGCCGATCCTGTTGCTATAACCCTTGGCCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
195 CTGTCGATCTTGCTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
*
13637077 CCTAAGCCAACTGACGAAA
260 CCTAAGCCAACCGACGAAA
13637096 TGTGCGGGTG
Statistics
Matches: 2549, Mismatches: 317, Indels: 206
0.83 0.10 0.07
Matches are distributed among these distances:
881 11 0.00
882 53 0.02
883 46 0.02
884 64 0.03
885 61 0.02
886 34 0.01
887 281 0.11
888 23 0.01
889 21 0.01
890 77 0.03
891 18 0.01
892 1 0.00
893 210 0.08
894 52 0.02
895 64 0.03
896 257 0.10
897 6 0.00
899 58 0.02
900 138 0.05
901 21 0.01
902 12 0.00
903 249 0.10
904 87 0.03
905 88 0.03
906 95 0.04
907 100 0.04
908 154 0.06
909 23 0.01
910 25 0.01
911 62 0.02
912 136 0.05
913 22 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
ACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GTGCTCAGCCGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTGC
TGTCGATCTTGCTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGG
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
CAATGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATG
GCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGAATTTTTTAAA
ATTTTTTCAGAAGAAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGG
GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGT
TCTCCGGTGATGCTCAGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAAC
Found at i:13636902 original size:26 final size:26
Alignment explanation
Indices: 13636866--13636915 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13636856 CTGGTTCGAT
13636866 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13636892 CTTAGATTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
13636916 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13637741 original size:26 final size:26
Alignment explanation
Indices: 13637705--13637757 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13637695 CTGGTCTGAT
*
13637705 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13637731 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13637757 C
1 C
13637758 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13637916 original size:839 final size:830
Alignment explanation
Indices: 13636281--13638831 Score: 2886
Period size: 839 Copynumber: 3.0 Consensus size: 830
13636271 TAGGGTGGTA
* *** *
13636281 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTTAATTCAT
* *
13636346 ACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
66 ACAATGGTCCATTAAG-CTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
* * *
13636411 ATTTTTGAAACTTTTTACAGTTC-AGAATTTTTTAAAATTTTTTCAGAAGAAATTTTGGCCCCAA
130 ATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTTAGAAG-GATTTTGGCCCCAA
** * * *
13636475 ACTTGGTAGACAAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
193 ACTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAA
*
13636540 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
258 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
13636605 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
323 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
13636670 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCTCCG
388 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT-CG
*
13636734 GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGGT-----GATGGTGCCCCG
452 G-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTAAGGTTCTCCGGTCCGACGATGGTGCCCCG
* ** * *
13636794 ACGAAGAAAAATACGACACCAACACATGTTCGAGCCCAGCATGTGCTGCCAAAACCTTCGGTCTG
516 ACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCGAAACCCTT-GGTCTG
* *
13636859 GT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTACGCCTAA
580 GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
13636923 GTCAACCCACGAAACGAGCGTACAGGTGCTCAGTCGGCTAGAGAGGCGGGATGCGCAAGCCAGGG
644 GTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCTAGAGGGGCGGGATGCGCAAGCTAGGG
* * * * *
13636988 ATCGGTCGGGTCCCCCTTTGCGTGCTGCCGATCCTGTTGCTATAACCCTTGGCCCAGTCCAATCT
709 ATCGGCCGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTACTGTAACCCTTGGTCCAGTCCAATCT
* * * *
13637053 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGTGCGGGTGGACG
774 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACG
13637110 GGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTTAATTCAT
1 GGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTTAATTCAT
* *
13637175 ACAATGGTCCATTAAGCTTCACGTGAAGTTTCATGGCAAGATGACTCCCTTTTCTATTTTTCATG
66 ACAATGGTCCATTAAGCTTCACGTGAAGTTTCATGGCAAGATGACT-CGTTTTCTATTTTTCACG
**
13637240 ATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAA
130 ATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTTAGAAGGA-TTTTGGCCCCAA
* * * *
13637305 ACTTGATAGGCGTGAT-TTTATATTTTTTTTGGCATGCAAAAAAAAAATTCAGGTAAAAACTCGA
193 ACTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGC-AAAAAAAAATTCAGCTAAAAACTCGA
* *
13637369 AGTGTATAAGATTTTGTGA-CATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTG
257 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
13637432 GCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTG
322 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
13637497 ATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTCG
387 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCG
* *
13637562 GCCTCCCCGATTGTCGGAACCCCAATGCCGCCGGTAAGGTTCTCAAGCGATGCTCCGACGATGGT
452 GCC-CCCCGATCGTCGGAACCCCAATGCCGTCGGTAAGGTTCTC---CG--G-TCCGACGATGGT
* *
13637627 GCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTT
510 GCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTG-CGAAACCCTT
*
13637692 GGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATG
574 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* ** * * *
13637757 CCTAAGTCAACCCACGAAACGAGCATTTGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGA
639 CCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCTAGAGGGGCGGGATGCGCAAGC
* * * * * **
13637822 TGGGGATCGGCCAGGTCCCCCTTTGTGTGCTGCCGATCTTGCTACTGCAACCCTCAGTCCAGTCC
704 TAGGGATCGGCCGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTACTGTAACCCTTGGTCCAGTCC
*
13637887 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
769 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACG
* ** ** ** * *** * * * **
13637949 GGCGGG--CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGATGTGAATCGATAGGGTGGT
1 GGTGGGTTTAGG---TACATC-TTCATA-TTTCTGCATGC-C-A-A--TG---CCAT----TTTT
* ** * *
13638012 AGGTGGGTTAAGGCACATCTTCATATTTCTAGATGCCAATGCCATTTTATGGCTTGTAAATTCAT
49 A--TGGCTT--GTTA-A--TTCATA---C-A-ATG---GT-CCA--TTA-AGC-------TTC--
* * * *
13638077 ACAATGGTCCCTTAAGCCTTCACGTG-AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
86 AC----G----TGAAG-TTTCATG-GCAAG--A--T--------GACTCGTTTTCTATTTTTCAC
* * *
13638141 GATTTTTGAAAC-TTTTACGATTCGGGATTTTTT-AAATTTTTTTCGAAAGGATTTTGGCCCC-A
129 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTAG-AAGGATTTTGGCCCCAA
*
13638203 ACTTGGTAGACGTGATCCTTATATTTTTTTTGGCACGC-AAAAAAAATTCAGCTAAAAACTCGAA
193 ACTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAA
13638267 GTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTG
258 GTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
13638331 GCAGCAAA-CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGATGTTTGATGAGGG
322 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GG
13638395 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAATCATGTGCGCACACCCCCT
386 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC-ATCATGTGCGCACACCCCCT
* ** * * *
13638460 -GACGCCCTTGATCGTCGGAACCCCAATACGGTCGGTCAGGTTCT-CGG-CCGACGATGGTGCCC
450 CGGC-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTAAGGTTCTCCGGTCCGACGATGGTGCCC
** * * * * * *
13638522 CTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGGATCTGCTACCGCAACCCCTCGG
514 C-GACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCT-GCG-AAACCCTTGG
* *
13638587 TCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCC
576 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
*
13638652 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCTAGA-GGG-GGGATGCGCAAGCTA
641 TAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCTAGAGGGGCGGGATGCGCAAGCTA
* * * * ** * * * **
13638715 AGGATCGACCGGGT-CCCCTCTACGTGCTGTTGATCCTACTACCGTAACCCTTGGTCCGGTCTGA
706 GGGATCGGCCGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTACTGTAACCCTTGGTCCAGTCCAA
* *
13638779 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACAAAACGAGCGG
771 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
13638832 ACAGACGAGC
Statistics
Matches: 1461, Mismatches: 163, Indels: 135
0.83 0.09 0.08
Matches are distributed among these distances:
827 2 0.00
828 221 0.15
829 142 0.10
830 89 0.06
831 2 0.00
833 1 0.00
834 1 0.00
837 2 0.00
839 286 0.20
840 12 0.01
841 3 0.00
842 6 0.00
843 1 0.00
844 1 0.00
845 1 0.00
847 2 0.00
850 3 0.00
854 3 0.00
856 5 0.00
858 2 0.00
859 1 0.00
861 6 0.00
864 1 0.00
865 1 0.00
866 3 0.00
869 1 0.00
870 3 0.00
872 3 0.00
873 2 0.00
880 3 0.00
882 2 0.00
886 1 0.00
890 91 0.06
891 47 0.03
892 48 0.03
893 111 0.08
895 3 0.00
897 42 0.03
898 72 0.05
899 152 0.10
900 41 0.03
901 13 0.01
902 25 0.02
903 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (830 bp):
GGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTTAATTCAT
ACAATGGTCCATTAAGCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGATTTTGGCCCCAAACT
TGGTAGACGTGATCCTTATATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCC
CCCGATCGTCGGAACCCCAATGCCGTCGGTAAGGTTCTCCGGTCCGACGATGGTGCCCCGACGAA
GAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCGAAACCCTTGGTCTGGTCTGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTACGGGCGCTCAGTCGGCTAGAGGGGCGGGATGCGCAAGCTAGGGATCGGCC
GGGTCCCCCTTTGCGTGCTGCCGATCCTGCTACTGTAACCCTTGGTCCAGTCCAATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACG
Found at i:13638637 original size:26 final size:26
Alignment explanation
Indices: 13638598--13638650 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13638588 CTGGTCTGAT
13638598 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
13638624 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13638650 C
1 C
13638651 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13639305 original size:893 final size:896
Alignment explanation
Indices: 13637110--13639327 Score: 3263
Period size: 890 Copynumber: 2.5 Consensus size: 896
13637100 CGGGTGGACG
* * *
13637110 GGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTTAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAATTTTATGGCTTGTAAATTCAT
* * *
13637175 ACAATGGTCCATTAAG-CTTCACGTGAAGTTTCATGGCAAGATGACTCCCTTTTCTATTTTTCAT
66 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-CGTTTTCTATTTTTCAT
** * *
13637239 GATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCA
130 GATTTTTGAAACTTTTTAC-GTTCGGGA-TTTTTTAAAATTTTTTCAGAAGG-TTTTTGGCCCCA
* * * *
13637304 AACTTGATAGGCGTGAT-TTTATATTTTTTTTGGCATGCAAAAAAAAAATTCAGGTAAAAACTCG
192 AACTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGC-AAAAAAAAATTCAGCTAAAAACTCG
* *
13637368 AAGTGTATAAGATTTTGTGA-CATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATT
256 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
13637431 GGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGT
321 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
13637496 GATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTC
386 GATAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTC
* * *
13637561 GGCCTCCCCGATTGTCGGAACCCCAATGCCGCCGGTAAGGTTCTCAAGCGATGCTCCGACGATGG
450 GACCTCCCCGATCGTCGGAACCCCAATACCGCCGGTAAGGTTCT--A-CGA-GC-CCGACGATGG
* * ** *
13637626 TGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCT
510 TGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATCTGCTACCGCAACCCT
* * *
13637691 TGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTAT
575 CGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
**
13637756 GCCTAAGTCAACCCACGAAACGAGCATTTGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAG
640 GCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAG
** * * ** * * *
13637821 ATGGGGATCGGCCAGGTCCCCCTTTGTGTGCTGCCGATCTTGCTACTGCAACCCTCAGTCCAGTC
705 ATAAGGATCGACCAGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCAGTCCAGTC
* * * * *
13637886 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
770 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGACAGACGAG
*
13637951 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGATGTGAATCGATAGGGTGGTA
835 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGACGTGAATCGATAGGGTGGTA
*
13638013 GGTGGGTTAAGGCACATCTTCATATTTCTAG-ATGCCAATGCC-ATTTTATGGCTTGTAAATTCA
1 GGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCAATTTTATGGCTTGTAAATTCA
*
13638076 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
65 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* *
13638141 GATTTTTGAAAC-TTTTACGATTCGGGATTTTTTAAATTTTTTTC-GAAAGGATTTTGGCCCC-A
130 GATTTTTGAAACTTTTTACG-TTCGGGATTTTTTAAAATTTTTTCAG-AAGGTTTTTGGCCCCAA
*
13638203 ACTTGGTAGACGTGATCCTTATATTTTTTTTGGCACGC-AAAAAAAATTCAGCTAAAAACTCGAA
193 ACTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAA
13638267 GTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTG
258 GTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
13638331 GCAGCAAA-CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGATGTTTGATGAGGG
322 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GG
13638395 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAATCATGTGCGCACACCCCCT
386 GATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC-ATCATGTGCGCACACCCCCT
** * * *
13638460 -GACGC-CCTTGATCGTCGGAACCCCAATACGGTCGGTCAGGTTCT-CG-G-CCGACGATGGTGC
449 CGAC-CTCCCCGATCGTCGGAACCCCAATACCGCCGGTAAGGTTCTACGAGCCCGACGATGGTGC
** * *
13638520 CCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGGATCTGCTACCGCAACCCCTC
513 CCC-GACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATCTGCTACCGCAA-CCCTC
*
13638585 GGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
576 GGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
13638650 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCTAGA-GGG-GGGATGCGCAAGC
641 CCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGA
* ** * ** * *
13638713 TAAGGATCGACCGGGT-CCCCTCTACGTGCTGTTGATCCTACTACCGTAACCCTTGGTCCGGTCT
706 TAAGGATCGACCAGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCAGTCCAGTCC
* *
13638777 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACAAAACGAGCGGACAGACGAGC
771 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGACAGACGAGC
* * *
13638842 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTA
836 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGACGTGAATCGATAGGGTGGTA
13638903 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAATTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAATTTTATGGCTTGTAAATTCAT
13638968 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
66 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
*
13639033 ATTTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAA
131 ATTTTTGAAACTTTTTAC-GTTCGGGATTTTTTAAAATTTTTTCAGAAGGT-TTTTGGCCCCAAA
* * *
13639098 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAGAAACTCGAAG
194 CTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAG
*
13639163 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGC
259 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
13639228 AGCAAACCTATAAAATCTCAATTGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
324 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
13639292 AAGGGCCAATATAAGGGTCAAGTGCCAGCACCCATC
389 AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
13639328 ACTCATTAGA
Statistics
Matches: 1194, Mismatches: 97, Indels: 58
0.89 0.07 0.04
Matches are distributed among these distances:
889 1 0.00
890 189 0.16
891 136 0.11
892 81 0.07
893 154 0.13
894 52 0.04
895 112 0.09
896 23 0.02
897 42 0.04
898 72 0.06
899 139 0.12
900 53 0.04
901 12 0.01
902 60 0.05
903 67 0.06
904 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (896 bp):
GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAATTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
ATTTTTGAAACTTTTTACGTTCGGGATTTTTTAAAATTTTTTCAGAAGGTTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTATATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGACCTC
CCCGATCGTCGGAACCCCAATACCGCCGGTAAGGTTCTACGAGCCCGACGATGGTGCCCCGACGA
AGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATCTGCTACCGCAACCCTCGGTCTGGTCT
GATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCATGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGATAAGGATCGA
CCAGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCAGTCCAGTCCAATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGACAGACGAGCGGGCGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGACGTGAATCGATAGGGTGGTA
Found at i:13641076 original size:26 final size:26
Alignment explanation
Indices: 13641047--13641099 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13641037 CCGATCTGAT
13641047 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
13641073 CTTAGACTGGGAATGATCTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
13641099 C
1 C
13641100 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Done.